Query psy7268
Match_columns 134
No_of_seqs 137 out of 1454
Neff 8.4
Searched_HMMs 29240
Date Fri Aug 16 22:21:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7268.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7268hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fmo_B ATP-dependent RNA helic 99.9 7.6E-24 2.6E-28 160.0 10.7 89 36-133 89-179 (300)
2 3fe2_A Probable ATP-dependent 99.9 2.6E-23 9E-28 151.9 11.7 96 34-133 24-119 (242)
3 2db3_A ATP-dependent RNA helic 99.9 5.4E-23 1.8E-27 161.8 12.4 95 35-133 52-146 (434)
4 3iuy_A Probable ATP-dependent 99.9 3.9E-23 1.3E-27 149.4 9.8 102 29-133 9-111 (228)
5 2pl3_A Probable ATP-dependent 99.9 1.2E-22 4E-27 147.5 11.1 96 33-133 19-114 (236)
6 1q0u_A Bstdead; DEAD protein, 99.9 5.5E-23 1.9E-27 147.9 9.0 88 37-133 2-89 (219)
7 3dkp_A Probable ATP-dependent 99.9 1E-22 3.5E-27 148.6 10.1 93 33-133 19-115 (245)
8 3ber_A Probable ATP-dependent 99.9 8.1E-23 2.8E-27 150.4 9.6 90 35-133 39-128 (249)
9 2oxc_A Probable ATP-dependent 99.9 1.1E-22 3.6E-27 147.6 9.8 93 32-133 17-109 (230)
10 1wrb_A DJVLGB; RNA helicase, D 99.9 3.8E-23 1.3E-27 151.6 7.2 98 36-133 20-117 (253)
11 3bor_A Human initiation factor 99.9 7.7E-23 2.6E-27 149.1 8.7 93 32-133 23-115 (237)
12 1vec_A ATP-dependent RNA helic 99.9 1.4E-22 4.7E-27 144.0 9.6 86 39-133 3-88 (206)
13 1qde_A EIF4A, translation init 99.9 2.3E-22 7.9E-27 144.6 10.2 91 34-133 9-99 (224)
14 1t6n_A Probable ATP-dependent 99.9 6.3E-22 2.1E-26 142.2 10.0 89 36-133 11-99 (220)
15 2i4i_A ATP-dependent RNA helic 99.9 1.3E-21 4.5E-26 151.3 11.4 99 35-133 11-118 (417)
16 2gxq_A Heat resistant RNA depe 99.9 1.6E-21 5.5E-26 138.4 10.1 88 40-133 2-89 (207)
17 3ly5_A ATP-dependent RNA helic 99.9 1.8E-21 6.3E-26 144.1 9.1 89 40-133 53-143 (262)
18 2j0s_A ATP-dependent RNA helic 99.9 3.2E-21 1.1E-25 149.2 10.4 90 35-133 33-122 (410)
19 3fht_A ATP-dependent RNA helic 99.8 1.1E-20 3.8E-25 145.6 10.9 90 35-133 21-112 (412)
20 3fmp_B ATP-dependent RNA helic 99.8 8.2E-21 2.8E-25 150.3 9.1 89 36-133 89-179 (479)
21 3pey_A ATP-dependent RNA helic 99.8 2.8E-20 9.5E-25 142.2 10.2 87 38-133 4-92 (395)
22 1s2m_A Putative ATP-dependent 99.8 4.1E-20 1.4E-24 142.4 9.5 89 36-133 18-106 (400)
23 1fuu_A Yeast initiation factor 99.8 3.5E-20 1.2E-24 142.0 8.4 90 35-133 17-106 (394)
24 3eiq_A Eukaryotic initiation f 99.8 1.1E-19 3.6E-24 140.3 10.2 90 35-133 36-125 (414)
25 1xti_A Probable ATP-dependent 99.8 6E-20 2.1E-24 140.7 8.7 86 39-133 8-93 (391)
26 3sqw_A ATP-dependent RNA helic 99.8 1.8E-19 6.1E-24 146.1 9.0 83 46-133 28-112 (579)
27 3i5x_A ATP-dependent RNA helic 99.8 2.1E-19 7.1E-24 144.6 9.1 83 46-133 79-163 (563)
28 1hv8_A Putative ATP-dependent 99.8 4E-19 1.4E-23 134.6 8.8 86 38-133 5-91 (367)
29 2z0m_A 337AA long hypothetical 99.7 1.7E-17 5.9E-22 124.4 9.2 73 46-133 1-73 (337)
30 2va8_A SSO2462, SKI2-type heli 99.7 2.7E-17 9.4E-22 136.0 9.9 84 39-133 8-92 (715)
31 2zj8_A DNA helicase, putative 99.7 1.4E-17 4.9E-22 138.0 7.6 83 40-133 2-85 (720)
32 1oyw_A RECQ helicase, ATP-depe 99.7 1.9E-17 6.6E-22 133.2 7.2 81 38-133 1-82 (523)
33 2v1x_A ATP-dependent DNA helic 99.7 1E-16 3.5E-21 130.8 8.3 78 41-133 23-101 (591)
34 2p6r_A Afuhel308 helicase; pro 99.7 1.4E-17 4.8E-22 137.7 2.7 82 40-133 2-85 (702)
35 3fho_A ATP-dependent RNA helic 99.6 2.9E-17 9.8E-22 131.5 2.1 88 37-133 117-206 (508)
36 3oiy_A Reverse gyrase helicase 99.6 2.4E-16 8.4E-21 122.3 7.1 73 48-133 8-81 (414)
37 3l9o_A ATP-dependent RNA helic 99.6 1.7E-15 5.7E-20 131.0 4.9 83 39-133 162-244 (1108)
38 2ykg_A Probable ATP-dependent 99.6 6E-15 2.1E-19 121.1 7.9 76 51-133 3-78 (696)
39 1gku_B Reverse gyrase, TOP-RG; 99.5 6.1E-15 2.1E-19 126.9 6.3 70 50-133 46-116 (1054)
40 4ddu_A Reverse gyrase; topoiso 99.5 1.4E-14 4.8E-19 125.2 8.3 71 50-133 67-138 (1104)
41 3tbk_A RIG-I helicase domain; 99.5 2.1E-14 7.3E-19 114.0 8.4 66 61-133 4-69 (555)
42 4a2p_A RIG-I, retinoic acid in 99.5 2.4E-14 8.1E-19 114.0 8.2 68 59-133 5-72 (556)
43 4f92_B U5 small nuclear ribonu 99.5 2.5E-14 8.4E-19 127.8 9.1 78 46-133 911-989 (1724)
44 1tf5_A Preprotein translocase 99.5 3E-14 1E-18 119.4 8.0 63 56-133 79-141 (844)
45 4a2q_A RIG-I, retinoic acid in 99.5 6E-14 2E-18 117.5 8.4 70 57-133 244-313 (797)
46 4f92_B U5 small nuclear ribonu 99.5 7.4E-14 2.5E-18 124.8 8.9 75 58-133 76-151 (1724)
47 1gm5_A RECG; helicase, replica 99.5 8.3E-14 2.8E-18 116.8 7.9 73 48-133 356-434 (780)
48 3b6e_A Interferon-induced heli 99.5 6.7E-14 2.3E-18 99.1 6.3 68 58-131 30-97 (216)
49 2jlq_A Serine protease subunit 99.5 5.1E-15 1.8E-19 117.0 0.5 64 58-133 1-65 (451)
50 2whx_A Serine protease/ntpase/ 99.5 1.3E-15 4.5E-20 124.9 -3.0 78 44-133 155-232 (618)
51 2xgj_A ATP-dependent RNA helic 99.4 2.8E-13 9.6E-18 116.3 7.9 67 54-133 80-146 (1010)
52 2wv9_A Flavivirin protease NS2 99.4 6.3E-15 2.2E-19 121.9 -2.8 70 53-133 202-287 (673)
53 4a2w_A RIG-I, retinoic acid in 99.4 2.6E-13 9E-18 115.6 6.6 70 57-133 244-313 (936)
54 2fsf_A Preprotein translocase 99.4 3.4E-13 1.2E-17 113.1 6.2 62 57-133 71-132 (853)
55 4a4z_A Antiviral helicase SKI2 99.4 5.9E-13 2E-17 114.2 7.6 65 56-133 35-99 (997)
56 3llm_A ATP-dependent RNA helic 99.3 1.3E-12 4.6E-17 94.7 6.6 67 60-133 60-126 (235)
57 2eyq_A TRCF, transcription-rep 99.3 3.5E-12 1.2E-16 110.7 9.9 77 44-133 586-669 (1151)
58 1nkt_A Preprotein translocase 99.3 2.1E-12 7.2E-17 108.8 7.9 62 57-133 108-169 (922)
59 1rif_A DAR protein, DNA helica 99.3 1.9E-12 6.5E-17 96.1 6.6 62 61-133 113-174 (282)
60 2oca_A DAR protein, ATP-depend 99.3 1.8E-12 6.2E-17 103.0 6.8 62 61-133 113-174 (510)
61 4gl2_A Interferon-induced heli 99.3 6.8E-13 2.3E-17 109.0 4.2 68 58-132 5-72 (699)
62 2ipc_A Preprotein translocase 99.3 2.5E-12 8.6E-17 108.5 7.4 62 57-133 76-137 (997)
63 2xau_A PRE-mRNA-splicing facto 99.3 9.9E-12 3.4E-16 104.2 8.4 88 36-133 69-157 (773)
64 2fwr_A DNA repair protein RAD2 99.3 1.4E-11 4.8E-16 97.0 8.8 58 61-133 93-150 (472)
65 3crv_A XPD/RAD3 related DNA he 99.3 6.4E-12 2.2E-16 101.5 6.6 60 58-133 1-64 (551)
66 2z83_A Helicase/nucleoside tri 99.2 1.7E-12 5.9E-17 102.8 2.6 51 72-133 17-67 (459)
67 1wp9_A ATP-dependent RNA helic 99.2 1.6E-11 5.5E-16 95.0 7.7 61 61-133 9-69 (494)
68 1yks_A Genome polyprotein [con 99.2 2.8E-12 9.7E-17 101.1 3.4 50 73-133 5-54 (440)
69 4a15_A XPD helicase, ATP-depen 99.2 1.2E-11 4.1E-16 101.5 6.6 62 61-133 3-68 (620)
70 2fz4_A DNA repair protein RAD2 99.2 4.8E-11 1.6E-15 87.0 8.7 58 61-133 93-150 (237)
71 2vl7_A XPD; helicase, unknown 99.2 1.9E-11 6.6E-16 98.6 6.3 61 57-133 4-68 (540)
72 2v6i_A RNA helicase; membrane, 99.2 2.3E-11 8E-16 95.6 4.8 48 75-133 1-48 (431)
73 3h1t_A Type I site-specific re 99.0 8.5E-10 2.9E-14 89.3 7.5 70 61-133 178-252 (590)
74 3o8b_A HCV NS3 protease/helica 98.9 4E-11 1.4E-15 99.0 -2.4 57 62-133 218-274 (666)
75 2w00_A HSDR, R.ECOR124I; ATP-b 98.8 4.3E-09 1.5E-13 90.7 5.1 76 48-133 251-347 (1038)
76 3rc3_A ATP-dependent RNA helic 98.7 9.5E-09 3.3E-13 85.1 3.3 46 72-133 151-196 (677)
77 1w36_D RECD, exodeoxyribonucle 98.5 6.2E-07 2.1E-11 73.4 8.8 61 63-133 151-213 (608)
78 1z63_A Helicase of the SNF2/RA 98.3 8.8E-07 3E-11 70.0 6.9 61 61-132 37-101 (500)
79 3jux_A Protein translocase sub 98.3 1.7E-06 5.6E-11 72.3 8.5 61 57-132 72-132 (822)
80 3dmq_A RNA polymerase-associat 98.3 1.5E-06 5.1E-11 74.5 6.7 61 61-132 153-215 (968)
81 4b3f_X DNA-binding protein smu 98.0 1.6E-05 5.5E-10 65.2 8.3 60 61-132 189-249 (646)
82 3mwy_W Chromo domain-containin 97.8 3.3E-05 1.1E-09 64.8 6.6 61 61-131 236-300 (800)
83 2gk6_A Regulator of nonsense t 97.8 8.8E-05 3E-09 60.7 8.3 64 59-133 178-241 (624)
84 2xzl_A ATP-dependent helicase 97.7 0.00013 4.4E-09 61.6 7.8 63 59-132 358-420 (802)
85 1z3i_X Similar to RAD54-like; 97.6 0.00015 5E-09 59.6 7.7 65 61-131 55-128 (644)
86 3e1s_A Exodeoxyribonuclease V, 97.6 0.00024 8E-09 57.8 7.9 60 61-132 189-248 (574)
87 2wjy_A Regulator of nonsense t 97.6 0.00026 8.9E-09 59.7 8.4 62 60-132 355-416 (800)
88 3upu_A ATP-dependent DNA helic 97.5 0.00027 9.2E-09 55.7 7.5 65 57-132 21-90 (459)
89 3lfu_A DNA helicase II; SF1 he 97.4 0.00035 1.2E-08 56.7 7.0 64 60-133 8-71 (647)
90 1c4o_A DNA nucleotide excision 97.2 0.0005 1.7E-08 56.7 6.0 60 58-133 6-70 (664)
91 1uaa_A REP helicase, protein ( 96.9 0.0014 4.9E-08 53.7 6.2 63 61-133 2-64 (673)
92 1pjr_A PCRA; DNA repair, DNA r 96.8 0.0034 1.2E-07 52.1 7.2 63 60-132 10-72 (724)
93 3u4q_A ATP-dependent helicase/ 96.6 0.0036 1.2E-07 55.0 6.4 65 61-133 10-74 (1232)
94 3ec2_A DNA replication protein 95.6 0.015 5.1E-07 39.5 4.4 19 75-93 37-55 (180)
95 2d7d_A Uvrabc system protein B 95.4 0.037 1.3E-06 45.6 7.0 58 61-133 12-74 (661)
96 4b4t_M 26S protease regulatory 95.4 0.0099 3.4E-07 46.8 3.4 57 34-93 173-232 (434)
97 3cpe_A Terminase, DNA packagin 95.4 0.058 2E-06 43.8 7.9 63 61-133 163-225 (592)
98 3co5_A Putative two-component 95.2 0.019 6.5E-07 37.7 3.8 21 73-93 24-44 (143)
99 2o0j_A Terminase, DNA packagin 95.2 0.08 2.7E-06 41.0 7.8 62 61-132 163-224 (385)
100 3n70_A Transport activator; si 95.1 0.024 8.3E-07 37.3 4.0 20 74-93 22-41 (145)
101 4b4t_J 26S protease regulatory 95.0 0.015 5.3E-07 45.4 3.3 57 34-93 140-199 (405)
102 1e9r_A Conjugal transfer prote 94.7 0.053 1.8E-06 41.9 5.6 44 75-130 52-95 (437)
103 1u0j_A DNA replication protein 94.3 0.081 2.8E-06 39.0 5.5 44 48-94 73-122 (267)
104 3h4m_A Proteasome-activating n 94.1 0.021 7.2E-07 41.4 2.0 56 36-93 11-68 (285)
105 4b4t_L 26S protease subunit RP 94.1 0.024 8.1E-07 44.7 2.3 55 36-93 175-232 (437)
106 3hws_A ATP-dependent CLP prote 94.1 0.11 3.8E-06 39.2 6.0 19 75-93 50-68 (363)
107 2w58_A DNAI, primosome compone 94.0 0.21 7.3E-06 34.1 7.0 24 77-101 55-78 (202)
108 1tue_A Replication protein E1; 94.0 0.14 4.7E-06 36.6 6.0 52 48-102 28-83 (212)
109 2oap_1 GSPE-2, type II secreti 94.0 0.11 3.7E-06 41.6 6.1 41 51-93 236-277 (511)
110 4b4t_I 26S protease regulatory 93.9 0.043 1.5E-06 43.2 3.6 57 34-93 174-233 (437)
111 4b4t_H 26S protease regulatory 93.9 0.031 1E-06 44.5 2.8 55 36-93 203-260 (467)
112 3nbx_X ATPase RAVA; AAA+ ATPas 93.9 0.099 3.4E-06 41.8 5.7 44 49-93 15-58 (500)
113 2qz4_A Paraplegin; AAA+, SPG7, 93.8 0.034 1.2E-06 39.6 2.6 52 39-93 3-56 (262)
114 3cf0_A Transitional endoplasmi 93.7 0.02 6.9E-07 42.3 1.2 56 37-93 10-66 (301)
115 3vkw_A Replicase large subunit 93.3 0.061 2.1E-06 42.5 3.5 38 79-133 164-201 (446)
116 4b4t_K 26S protease regulatory 93.3 0.053 1.8E-06 42.6 3.1 55 36-93 166-223 (428)
117 1xwi_A SKD1 protein; VPS4B, AA 93.2 0.12 4.3E-06 38.5 4.9 50 38-93 8-62 (322)
118 1ixz_A ATP-dependent metallopr 93.1 0.022 7.4E-07 40.8 0.6 53 36-93 10-66 (254)
119 3b85_A Phosphate starvation-in 93.1 0.11 3.8E-06 36.5 4.3 35 59-93 5-39 (208)
120 2qgz_A Helicase loader, putati 93.0 0.26 8.7E-06 36.7 6.4 26 76-102 152-177 (308)
121 3eie_A Vacuolar protein sortin 92.8 0.2 6.8E-06 37.2 5.6 52 36-93 12-68 (322)
122 1lv7_A FTSH; alpha/beta domain 92.8 0.039 1.3E-06 39.5 1.6 54 37-93 7-62 (257)
123 2r44_A Uncharacterized protein 92.8 0.071 2.4E-06 39.6 3.1 26 68-93 38-63 (331)
124 2kjq_A DNAA-related protein; s 92.7 0.16 5.4E-06 33.7 4.4 19 75-93 35-53 (149)
125 1jbk_A CLPB protein; beta barr 92.6 0.063 2.2E-06 35.6 2.4 25 76-101 43-67 (195)
126 1ofh_A ATP-dependent HSL prote 92.6 0.42 1.4E-05 34.5 7.0 18 76-93 50-67 (310)
127 2bjv_A PSP operon transcriptio 92.5 0.13 4.3E-06 36.9 4.0 19 75-93 28-46 (265)
128 2dr3_A UPF0273 protein PH0284; 92.3 0.21 7E-06 35.0 4.8 20 75-94 22-41 (247)
129 3bos_A Putative DNA replicatio 92.2 0.075 2.6E-06 36.9 2.4 19 75-93 51-69 (242)
130 2zts_A Putative uncharacterize 91.9 0.2 6.7E-06 35.1 4.3 25 75-99 29-53 (251)
131 2orw_A Thymidine kinase; TMTK, 91.9 0.27 9.2E-06 33.7 4.9 19 76-94 3-21 (184)
132 3te6_A Regulatory protein SIR3 91.8 0.064 2.2E-06 40.5 1.8 27 75-102 44-70 (318)
133 3syl_A Protein CBBX; photosynt 91.8 0.077 2.7E-06 38.7 2.2 17 77-93 68-84 (309)
134 2p65_A Hypothetical protein PF 91.7 0.068 2.3E-06 35.5 1.6 18 76-93 43-60 (187)
135 1kgd_A CASK, peripheral plasma 91.5 0.1 3.5E-06 35.4 2.4 19 75-93 4-22 (180)
136 2x8a_A Nuclear valosin-contain 91.5 0.03 1E-06 41.1 -0.4 53 38-93 6-61 (274)
137 2b8t_A Thymidine kinase; deoxy 91.5 0.24 8.3E-06 35.3 4.4 39 75-125 11-49 (223)
138 1iy2_A ATP-dependent metallopr 91.4 0.05 1.7E-06 39.5 0.8 52 37-93 35-90 (278)
139 3b9p_A CG5977-PA, isoform A; A 91.4 0.093 3.2E-06 38.2 2.2 54 37-93 16-71 (297)
140 2gza_A Type IV secretion syste 91.4 0.12 4.2E-06 39.3 3.0 21 73-93 172-192 (361)
141 2w0m_A SSO2452; RECA, SSPF, un 91.2 0.25 8.6E-06 34.0 4.2 19 75-93 22-40 (235)
142 3d8b_A Fidgetin-like protein 1 91.1 0.36 1.2E-05 36.4 5.3 18 76-93 117-134 (357)
143 1p9r_A General secretion pathw 91.1 0.18 6.2E-06 39.4 3.7 35 66-101 155-191 (418)
144 3pfi_A Holliday junction ATP-d 91.0 0.47 1.6E-05 35.0 5.8 42 40-93 27-72 (338)
145 1lvg_A Guanylate kinase, GMP k 91.0 0.12 4.3E-06 35.7 2.5 19 75-93 3-21 (198)
146 4ag6_A VIRB4 ATPase, type IV s 91.0 0.26 9E-06 37.5 4.5 21 75-95 34-54 (392)
147 3vaa_A Shikimate kinase, SK; s 91.0 0.12 4.2E-06 35.5 2.4 20 74-93 23-42 (199)
148 1xx6_A Thymidine kinase; NESG, 91.0 0.31 1.1E-05 33.9 4.5 39 76-126 8-46 (191)
149 3vkg_A Dynein heavy chain, cyt 90.8 0.28 9.6E-06 47.2 5.2 49 46-94 873-924 (3245)
150 3uk6_A RUVB-like 2; hexameric 90.8 0.11 3.8E-06 38.9 2.2 18 76-93 70-87 (368)
151 4akg_A Glutathione S-transfera 90.7 0.72 2.4E-05 43.9 7.7 48 46-94 890-941 (2695)
152 1ojl_A Transcriptional regulat 90.5 0.22 7.6E-06 36.8 3.6 19 75-93 24-42 (304)
153 2pt7_A CAG-ALFA; ATPase, prote 90.4 0.16 5.3E-06 38.3 2.7 20 73-92 168-187 (330)
154 3tau_A Guanylate kinase, GMP k 90.3 0.15 5.3E-06 35.4 2.4 19 75-93 7-25 (208)
155 2eyu_A Twitching motility prot 90.2 0.12 4.1E-06 37.6 1.9 21 73-93 22-42 (261)
156 2qor_A Guanylate kinase; phosp 90.2 0.14 4.7E-06 35.4 2.1 21 73-93 9-29 (204)
157 1zp6_A Hypothetical protein AT 90.1 0.12 4.2E-06 34.9 1.8 20 74-93 7-26 (191)
158 4gp7_A Metallophosphoesterase; 90.1 0.13 4.5E-06 34.6 1.9 20 75-94 8-27 (171)
159 3bgw_A DNAB-like replicative h 90.1 0.44 1.5E-05 37.3 5.1 37 75-123 196-232 (444)
160 2chg_A Replication factor C sm 90.0 0.19 6.6E-06 34.0 2.7 17 77-93 39-55 (226)
161 2j41_A Guanylate kinase; GMP, 90.0 0.15 5.2E-06 34.7 2.2 20 74-93 4-23 (207)
162 1qhx_A CPT, protein (chloramph 90.0 0.15 5.3E-06 34.0 2.2 18 76-93 3-20 (178)
163 1l8q_A Chromosomal replication 90.0 0.18 6E-06 37.3 2.7 25 76-101 37-61 (324)
164 3lw7_A Adenylate kinase relate 90.0 0.16 5.5E-06 33.3 2.2 16 78-93 3-18 (179)
165 3trf_A Shikimate kinase, SK; a 89.9 0.17 5.8E-06 34.0 2.4 18 76-93 5-22 (185)
166 3tr0_A Guanylate kinase, GMP k 89.8 0.18 6.1E-06 34.4 2.4 19 75-93 6-24 (205)
167 3iij_A Coilin-interacting nucl 89.8 0.21 7.2E-06 33.5 2.7 20 74-93 9-28 (180)
168 1d2n_A N-ethylmaleimide-sensit 89.7 0.15 5.1E-06 36.7 2.1 17 77-93 65-81 (272)
169 1sxj_A Activator 1 95 kDa subu 89.7 0.66 2.2E-05 36.8 5.9 17 77-93 78-94 (516)
170 1kag_A SKI, shikimate kinase I 89.7 0.21 7.1E-06 33.2 2.6 18 76-93 4-21 (173)
171 2ius_A DNA translocase FTSK; n 89.6 0.6 2E-05 37.5 5.6 27 75-101 166-192 (512)
172 1njg_A DNA polymerase III subu 89.6 0.36 1.2E-05 32.9 3.9 16 78-93 47-62 (250)
173 1z6g_A Guanylate kinase; struc 89.5 0.22 7.5E-06 35.0 2.7 21 73-93 20-40 (218)
174 3nwn_A Kinesin-like protein KI 89.5 0.31 1.1E-05 37.3 3.8 24 70-93 97-122 (359)
175 2qp9_X Vacuolar protein sortin 89.4 0.2 6.9E-06 37.9 2.6 51 37-93 46-101 (355)
176 2c9o_A RUVB-like 1; hexameric 89.4 0.17 5.9E-06 39.5 2.3 45 37-93 32-80 (456)
177 3t15_A Ribulose bisphosphate c 89.4 0.16 5.6E-06 37.3 2.1 17 77-93 37-53 (293)
178 1bg2_A Kinesin; motor protein, 89.4 0.35 1.2E-05 36.5 3.9 24 70-93 70-95 (325)
179 1znw_A Guanylate kinase, GMP k 89.3 0.21 7E-06 34.6 2.5 22 72-93 16-37 (207)
180 2v1u_A Cell division control p 89.1 0.19 6.6E-06 37.4 2.3 19 75-93 43-61 (387)
181 2r62_A Cell division protease 89.1 0.11 3.9E-06 37.1 1.0 18 76-93 44-61 (268)
182 3a00_A Guanylate kinase, GMP k 89.0 0.24 8.3E-06 33.6 2.6 17 77-93 2-18 (186)
183 1s96_A Guanylate kinase, GMP k 89.0 0.22 7.5E-06 35.2 2.4 21 73-93 13-33 (219)
184 3dc4_A Kinesin-like protein NO 88.9 0.33 1.1E-05 36.9 3.5 23 71-93 88-112 (344)
185 1ly1_A Polynucleotide kinase; 88.9 0.21 7.3E-06 33.1 2.2 16 78-93 4-19 (181)
186 4eun_A Thermoresistant glucoki 88.8 0.23 8E-06 34.1 2.4 19 75-93 28-46 (200)
187 1um8_A ATP-dependent CLP prote 88.8 0.23 7.9E-06 37.5 2.6 18 76-93 72-89 (376)
188 3bh0_A DNAB-like replicative h 88.8 0.67 2.3E-05 34.4 5.1 26 75-101 67-92 (315)
189 4a14_A Kinesin, kinesin-like p 88.8 0.41 1.4E-05 36.4 3.9 24 70-93 76-101 (344)
190 1iqp_A RFCS; clamp loader, ext 88.7 0.67 2.3E-05 33.6 5.0 16 78-93 48-63 (327)
191 1ex7_A Guanylate kinase; subst 88.7 0.26 9E-06 34.1 2.6 16 77-92 2-17 (186)
192 1sxj_D Activator 1 41 kDa subu 88.7 0.35 1.2E-05 35.7 3.5 17 77-93 59-75 (353)
193 4fcw_A Chaperone protein CLPB; 88.6 0.27 9.3E-06 35.7 2.8 17 77-93 48-64 (311)
194 3vfd_A Spastin; ATPase, microt 88.5 0.22 7.5E-06 38.0 2.3 18 76-93 148-165 (389)
195 1kht_A Adenylate kinase; phosp 88.5 0.24 8.4E-06 33.1 2.3 18 76-93 3-20 (192)
196 2ehv_A Hypothetical protein PH 88.5 0.58 2E-05 32.7 4.4 22 74-95 28-49 (251)
197 3b6u_A Kinesin-like protein KI 88.5 0.41 1.4E-05 36.9 3.8 24 70-93 94-119 (372)
198 2y65_A Kinesin, kinesin heavy 88.5 0.43 1.5E-05 36.6 3.9 23 71-93 78-102 (365)
199 2vvg_A Kinesin-2; motor protei 88.4 0.44 1.5E-05 36.4 3.9 23 71-93 83-107 (350)
200 1hqc_A RUVB; extended AAA-ATPa 88.4 0.21 7.2E-06 36.6 2.1 42 40-93 10-55 (324)
201 2ze6_A Isopentenyl transferase 88.4 0.23 7.8E-06 35.8 2.2 15 79-93 4-18 (253)
202 2h58_A Kinesin-like protein KI 88.4 0.45 1.5E-05 36.0 3.9 26 68-93 71-98 (330)
203 2zfi_A Kinesin-like protein KI 88.3 0.45 1.5E-05 36.5 3.9 24 70-93 82-107 (366)
204 1knq_A Gluconate kinase; ALFA/ 88.3 0.21 7.2E-06 33.3 1.9 18 76-93 8-25 (175)
205 1y63_A LMAJ004144AAA protein; 88.3 0.25 8.6E-06 33.5 2.3 19 75-93 9-27 (184)
206 1goj_A Kinesin, kinesin heavy 88.3 0.42 1.4E-05 36.6 3.7 23 71-93 74-98 (355)
207 3gbj_A KIF13B protein; kinesin 88.2 0.44 1.5E-05 36.4 3.8 25 69-93 84-110 (354)
208 2iut_A DNA translocase FTSK; n 88.2 0.84 2.9E-05 37.2 5.6 27 76-102 214-240 (574)
209 2ce7_A Cell division protein F 88.2 0.22 7.6E-06 39.5 2.2 51 38-93 12-66 (476)
210 3kb2_A SPBC2 prophage-derived 88.2 0.25 8.6E-06 32.5 2.2 16 78-93 3-18 (173)
211 2nr8_A Kinesin-like protein KI 88.1 0.45 1.5E-05 36.4 3.8 24 70-93 96-121 (358)
212 1t5c_A CENP-E protein, centrom 88.1 0.45 1.5E-05 36.3 3.8 24 70-93 70-95 (349)
213 4a1f_A DNAB helicase, replicat 88.0 0.75 2.6E-05 34.9 5.0 27 75-102 45-71 (338)
214 3lre_A Kinesin-like protein KI 88.0 0.44 1.5E-05 36.4 3.7 23 71-93 99-123 (355)
215 3ney_A 55 kDa erythrocyte memb 88.0 0.28 9.7E-06 34.3 2.4 20 74-93 17-36 (197)
216 1sxj_E Activator 1 40 kDa subu 88.0 1 3.6E-05 33.2 5.7 43 39-93 11-53 (354)
217 2ewv_A Twitching motility prot 87.9 0.21 7.1E-06 38.2 1.8 20 74-93 134-153 (372)
218 4etp_A Kinesin-like protein KA 87.9 0.54 1.8E-05 36.6 4.2 25 69-93 132-158 (403)
219 1xp8_A RECA protein, recombina 87.9 0.67 2.3E-05 35.4 4.7 26 76-102 74-99 (366)
220 1g8p_A Magnesium-chelatase 38 87.8 0.17 5.9E-06 37.4 1.3 19 75-93 44-62 (350)
221 1x88_A Kinesin-like protein KI 87.6 0.44 1.5E-05 36.5 3.5 25 69-93 80-106 (359)
222 3u06_A Protein claret segregat 87.6 0.45 1.5E-05 37.1 3.6 26 68-93 129-156 (412)
223 2wbe_C Bipolar kinesin KRP-130 87.5 0.47 1.6E-05 36.5 3.5 23 71-93 94-118 (373)
224 3hr8_A Protein RECA; alpha and 87.4 0.65 2.2E-05 35.5 4.3 26 76-102 61-86 (356)
225 2px0_A Flagellar biosynthesis 87.4 0.85 2.9E-05 33.7 4.9 18 76-93 105-122 (296)
226 3jvv_A Twitching mobility prot 87.4 0.24 8.3E-06 37.8 1.9 27 75-102 122-148 (356)
227 3cob_A Kinesin heavy chain-lik 87.2 0.42 1.4E-05 36.8 3.1 25 69-93 71-97 (369)
228 1v8k_A Kinesin-like protein KI 87.1 0.55 1.9E-05 36.7 3.8 24 70-93 147-172 (410)
229 3cm0_A Adenylate kinase; ATP-b 87.0 0.22 7.7E-06 33.4 1.4 19 75-93 3-21 (186)
230 1cr0_A DNA primase/helicase; R 87.0 0.96 3.3E-05 32.8 4.9 21 74-94 33-53 (296)
231 2zr9_A Protein RECA, recombina 86.9 0.88 3E-05 34.5 4.8 23 75-97 60-82 (349)
232 3nwj_A ATSK2; P loop, shikimat 86.9 0.45 1.5E-05 34.4 3.0 20 74-93 46-65 (250)
233 3exa_A TRNA delta(2)-isopenten 86.8 0.34 1.2E-05 36.7 2.4 16 78-93 5-20 (322)
234 3t0q_A AGR253WP; kinesin, alph 86.8 0.48 1.7E-05 36.1 3.3 25 69-93 77-103 (349)
235 3foz_A TRNA delta(2)-isopenten 86.8 0.34 1.2E-05 36.6 2.4 15 79-93 13-27 (316)
236 2zan_A Vacuolar protein sortin 86.8 0.31 1.1E-05 38.0 2.3 54 37-93 129-184 (444)
237 3a8t_A Adenylate isopentenyltr 86.8 0.34 1.2E-05 36.9 2.4 17 77-93 41-57 (339)
238 2heh_A KIF2C protein; kinesin, 86.7 0.55 1.9E-05 36.4 3.6 24 70-93 127-152 (387)
239 3u4q_B ATP-dependent helicase/ 86.7 0.77 2.6E-05 40.0 4.8 39 80-127 5-43 (1166)
240 3uie_A Adenylyl-sulfate kinase 86.6 0.31 1E-05 33.5 1.9 19 75-93 24-42 (200)
241 1sxj_C Activator 1 40 kDa subu 86.6 1.6 5.3E-05 32.4 6.0 15 79-93 49-63 (340)
242 2j9r_A Thymidine kinase; TK1, 86.5 1.2 4.1E-05 31.6 5.0 37 79-127 31-67 (214)
243 2owm_A Nckin3-434, related to 86.5 0.79 2.7E-05 36.1 4.4 23 71-93 130-154 (443)
244 2bdt_A BH3686; alpha-beta prot 86.4 0.37 1.3E-05 32.5 2.2 17 77-93 3-19 (189)
245 1u94_A RECA protein, recombina 86.3 1 3.6E-05 34.2 4.9 22 75-96 62-83 (356)
246 2q6t_A DNAB replication FORK h 86.1 1 3.5E-05 35.0 4.9 27 75-102 199-225 (444)
247 3t61_A Gluconokinase; PSI-biol 86.1 0.38 1.3E-05 32.8 2.2 17 77-93 19-35 (202)
248 2qby_A CDC6 homolog 1, cell di 86.1 0.42 1.4E-05 35.4 2.6 18 76-93 45-62 (386)
249 3pxg_A Negative regulator of g 86.1 0.52 1.8E-05 37.0 3.2 26 75-101 200-225 (468)
250 2r6a_A DNAB helicase, replicat 86.0 1.1 3.7E-05 35.0 5.0 26 75-101 202-227 (454)
251 3bfn_A Kinesin-like protein KI 86.0 0.48 1.6E-05 36.7 2.9 32 62-93 75-116 (388)
252 1f9v_A Kinesin-like protein KA 85.9 0.53 1.8E-05 35.9 3.1 25 69-93 76-102 (347)
253 1gvn_B Zeta; postsegregational 85.9 0.36 1.2E-05 35.5 2.1 17 77-93 34-50 (287)
254 2chq_A Replication factor C sm 85.9 1.4 4.8E-05 31.7 5.3 42 39-93 14-55 (319)
255 1fnn_A CDC6P, cell division co 85.9 0.58 2E-05 34.9 3.3 16 78-93 46-61 (389)
256 1xjc_A MOBB protein homolog; s 85.8 1.3 4.3E-05 30.2 4.7 22 79-101 7-28 (169)
257 2cvh_A DNA repair and recombin 85.7 0.5 1.7E-05 32.3 2.7 21 75-95 19-39 (220)
258 3k1j_A LON protease, ATP-depen 85.7 0.74 2.5E-05 37.3 4.0 23 71-93 55-77 (604)
259 3c8u_A Fructokinase; YP_612366 85.7 0.35 1.2E-05 33.4 1.8 19 75-93 21-39 (208)
260 2rhm_A Putative kinase; P-loop 85.6 0.35 1.2E-05 32.5 1.8 18 76-93 5-22 (193)
261 1in4_A RUVB, holliday junction 85.6 0.44 1.5E-05 35.5 2.5 17 77-93 52-68 (334)
262 3hu3_A Transitional endoplasmi 85.5 0.41 1.4E-05 38.0 2.4 52 40-93 202-255 (489)
263 2qmh_A HPR kinase/phosphorylas 85.5 0.38 1.3E-05 34.1 1.9 19 75-93 33-51 (205)
264 1m7g_A Adenylylsulfate kinase; 85.4 0.5 1.7E-05 32.6 2.6 30 63-93 13-42 (211)
265 3tif_A Uncharacterized ABC tra 85.3 0.47 1.6E-05 33.8 2.4 18 75-92 30-47 (235)
266 2qby_B CDC6 homolog 3, cell di 85.2 0.44 1.5E-05 35.6 2.3 18 76-93 45-62 (384)
267 1tev_A UMP-CMP kinase; ploop, 85.0 0.39 1.3E-05 32.1 1.8 18 76-93 3-20 (196)
268 2rep_A Kinesin-like protein KI 85.0 0.57 2E-05 36.1 2.9 24 70-93 108-133 (376)
269 1n0w_A DNA repair protein RAD5 84.9 0.57 1.9E-05 32.6 2.7 21 75-95 23-43 (243)
270 1ye8_A Protein THEP1, hypothet 84.9 0.47 1.6E-05 32.3 2.2 16 78-93 2-17 (178)
271 3kta_A Chromosome segregation 84.9 0.45 1.5E-05 31.8 2.1 16 78-93 28-43 (182)
272 3f9v_A Minichromosome maintena 84.9 0.44 1.5E-05 38.7 2.3 16 78-93 329-344 (595)
273 2c95_A Adenylate kinase 1; tra 84.8 0.51 1.7E-05 31.7 2.3 19 75-93 8-26 (196)
274 1w4r_A Thymidine kinase; type 84.7 1.2 4.2E-05 31.2 4.3 39 75-125 19-57 (195)
275 1f2t_A RAD50 ABC-ATPase; DNA d 84.6 0.51 1.8E-05 31.1 2.2 15 79-93 26-40 (149)
276 3crm_A TRNA delta(2)-isopenten 84.5 0.48 1.6E-05 35.8 2.2 16 78-93 7-22 (323)
277 2v54_A DTMP kinase, thymidylat 84.5 0.53 1.8E-05 31.9 2.3 19 75-93 3-21 (204)
278 4a74_A DNA repair and recombin 84.5 0.48 1.6E-05 32.6 2.1 19 75-93 24-42 (231)
279 2i3b_A HCR-ntpase, human cance 84.4 0.62 2.1E-05 32.1 2.6 18 76-93 1-18 (189)
280 3lnc_A Guanylate kinase, GMP k 84.3 0.4 1.4E-05 33.6 1.6 19 75-93 26-44 (231)
281 3asz_A Uridine kinase; cytidin 84.2 0.44 1.5E-05 32.7 1.8 19 75-93 5-23 (211)
282 2r2a_A Uncharacterized protein 84.2 0.83 2.8E-05 31.8 3.2 15 79-93 8-22 (199)
283 3qf7_A RAD50; ABC-ATPase, ATPa 84.2 0.49 1.7E-05 36.0 2.2 16 78-93 25-40 (365)
284 2r8r_A Sensor protein; KDPD, P 84.2 1.5 5.2E-05 31.4 4.7 19 76-94 5-24 (228)
285 1nks_A Adenylate kinase; therm 84.0 0.52 1.8E-05 31.5 2.1 16 78-93 3-18 (194)
286 3m6a_A ATP-dependent protease 84.0 0.52 1.8E-05 37.8 2.3 19 75-93 107-125 (543)
287 4akg_A Glutathione S-transfera 84.0 0.5 1.7E-05 44.9 2.5 21 73-93 1264-1284(2695)
288 2z43_A DNA repair and recombin 84.0 0.97 3.3E-05 33.6 3.7 20 76-95 107-126 (324)
289 1via_A Shikimate kinase; struc 84.0 0.63 2.2E-05 31.0 2.5 16 78-93 6-21 (175)
290 3pvs_A Replication-associated 83.9 0.51 1.7E-05 37.0 2.2 17 77-93 51-67 (447)
291 2z4s_A Chromosomal replication 83.9 0.58 2E-05 36.5 2.5 26 76-102 130-155 (440)
292 3d3q_A TRNA delta(2)-isopenten 83.8 0.53 1.8E-05 35.8 2.2 16 78-93 9-24 (340)
293 3fb4_A Adenylate kinase; psych 83.8 0.57 1.9E-05 32.2 2.2 15 79-93 3-17 (216)
294 3cf2_A TER ATPase, transitiona 83.7 0.54 1.8E-05 39.8 2.4 54 37-93 472-528 (806)
295 1jr3_A DNA polymerase III subu 83.7 1.8 6.3E-05 32.0 5.2 16 78-93 40-55 (373)
296 2cbz_A Multidrug resistance-as 83.6 0.62 2.1E-05 33.2 2.4 19 75-93 30-48 (237)
297 1g41_A Heat shock protein HSLU 83.3 0.68 2.3E-05 36.5 2.7 18 76-93 50-67 (444)
298 2pez_A Bifunctional 3'-phospho 83.3 0.54 1.9E-05 31.4 1.9 19 75-93 4-22 (179)
299 2iyv_A Shikimate kinase, SK; t 83.2 0.76 2.6E-05 30.7 2.7 17 77-93 3-19 (184)
300 2bwj_A Adenylate kinase 5; pho 83.1 0.64 2.2E-05 31.3 2.3 19 75-93 11-29 (199)
301 3dl0_A Adenylate kinase; phosp 83.0 0.63 2.2E-05 32.0 2.2 15 79-93 3-17 (216)
302 1sgw_A Putative ABC transporte 83.0 0.77 2.6E-05 32.4 2.7 19 75-93 34-52 (214)
303 3dm5_A SRP54, signal recogniti 83.0 1.5 5.3E-05 34.4 4.6 16 78-93 102-117 (443)
304 3pxi_A Negative regulator of g 82.9 0.57 1.9E-05 38.9 2.2 26 75-101 200-225 (758)
305 1cke_A CK, MSSA, protein (cyti 82.9 0.63 2.2E-05 32.1 2.2 17 77-93 6-22 (227)
306 1nlf_A Regulatory protein REPA 82.9 0.84 2.9E-05 32.9 2.9 24 73-96 27-50 (279)
307 1aky_A Adenylate kinase; ATP:A 82.8 0.71 2.4E-05 32.0 2.4 18 76-93 4-21 (220)
308 2yvu_A Probable adenylyl-sulfa 82.8 0.58 2E-05 31.5 1.9 19 75-93 12-30 (186)
309 2bbw_A Adenylate kinase 4, AK4 82.7 0.67 2.3E-05 32.8 2.3 18 76-93 27-44 (246)
310 1zd8_A GTP:AMP phosphotransfer 82.7 0.65 2.2E-05 32.4 2.2 18 76-93 7-24 (227)
311 1zak_A Adenylate kinase; ATP:A 82.6 0.77 2.6E-05 31.8 2.6 18 76-93 5-22 (222)
312 1qf9_A UMP/CMP kinase, protein 82.6 0.64 2.2E-05 31.0 2.1 16 78-93 8-23 (194)
313 1e6c_A Shikimate kinase; phosp 82.6 0.69 2.3E-05 30.5 2.2 17 77-93 3-19 (173)
314 2pze_A Cystic fibrosis transme 82.6 0.71 2.4E-05 32.7 2.4 19 75-93 33-51 (229)
315 2v9p_A Replication protein E1; 82.5 0.79 2.7E-05 34.2 2.7 19 75-93 125-143 (305)
316 2pcj_A ABC transporter, lipopr 82.3 0.7 2.4E-05 32.6 2.3 18 75-92 29-46 (224)
317 2plr_A DTMP kinase, probable t 82.3 0.61 2.1E-05 31.6 1.9 19 75-93 3-21 (213)
318 1g6h_A High-affinity branched- 82.3 0.74 2.5E-05 33.2 2.4 19 75-93 32-50 (257)
319 2wwf_A Thymidilate kinase, put 82.1 0.69 2.4E-05 31.5 2.1 19 75-93 9-27 (212)
320 3u61_B DNA polymerase accessor 82.1 1.6 5.6E-05 31.9 4.3 40 39-93 23-65 (324)
321 2ff7_A Alpha-hemolysin translo 82.1 0.76 2.6E-05 33.0 2.4 19 75-93 34-52 (247)
322 2if2_A Dephospho-COA kinase; a 82.1 0.68 2.3E-05 31.5 2.1 16 78-93 3-18 (204)
323 2cdn_A Adenylate kinase; phosp 82.0 0.81 2.8E-05 31.2 2.4 18 76-93 20-37 (201)
324 2ghi_A Transport protein; mult 82.0 0.77 2.6E-05 33.2 2.4 19 75-93 45-63 (260)
325 3gfo_A Cobalt import ATP-bindi 82.0 0.74 2.5E-05 33.7 2.3 19 75-93 33-51 (275)
326 1ji0_A ABC transporter; ATP bi 82.0 0.78 2.7E-05 32.7 2.4 19 75-93 31-49 (240)
327 3a4m_A L-seryl-tRNA(SEC) kinas 81.9 0.71 2.4E-05 33.1 2.2 17 77-93 5-21 (260)
328 3eph_A TRNA isopentenyltransfe 81.9 0.68 2.3E-05 36.1 2.2 22 79-101 5-26 (409)
329 1rj9_A FTSY, signal recognitio 81.8 0.75 2.6E-05 34.2 2.4 18 76-93 102-119 (304)
330 4g1u_C Hemin import ATP-bindin 81.8 0.78 2.7E-05 33.4 2.4 19 75-93 36-54 (266)
331 1nn5_A Similar to deoxythymidy 81.7 0.75 2.6E-05 31.4 2.2 19 75-93 8-26 (215)
332 1jjv_A Dephospho-COA kinase; P 81.7 0.77 2.6E-05 31.3 2.2 15 79-93 5-19 (206)
333 1ukz_A Uridylate kinase; trans 81.6 0.77 2.6E-05 31.2 2.2 16 78-93 17-32 (203)
334 3cmu_A Protein RECA, recombina 81.5 1.7 5.9E-05 40.3 4.9 44 70-125 1415-1464(2050)
335 4h1g_A Maltose binding protein 81.5 1.3 4.5E-05 36.7 3.9 26 68-93 453-480 (715)
336 1np6_A Molybdopterin-guanine d 81.4 2.5 8.4E-05 28.7 4.7 23 78-101 8-30 (174)
337 1ypw_A Transitional endoplasmi 81.4 0.61 2.1E-05 39.3 1.9 19 75-93 237-255 (806)
338 1b0u_A Histidine permease; ABC 81.3 0.84 2.9E-05 33.1 2.4 19 75-93 31-49 (262)
339 4e22_A Cytidylate kinase; P-lo 81.1 0.84 2.9E-05 32.6 2.4 19 75-93 26-44 (252)
340 2vli_A Antibiotic resistance p 81.0 0.65 2.2E-05 30.9 1.6 19 75-93 4-22 (183)
341 3kl4_A SRP54, signal recogniti 81.0 1.7 5.9E-05 34.0 4.2 16 78-93 99-114 (433)
342 2jaq_A Deoxyguanosine kinase; 80.9 0.84 2.9E-05 30.7 2.2 15 79-93 3-17 (205)
343 2d2e_A SUFC protein; ABC-ATPas 80.9 0.89 3E-05 32.6 2.4 19 75-93 28-46 (250)
344 1mv5_A LMRA, multidrug resista 80.9 0.71 2.4E-05 33.0 1.9 19 75-93 27-45 (243)
345 3b9q_A Chloroplast SRP recepto 80.9 0.71 2.4E-05 34.3 1.9 16 78-93 102-117 (302)
346 2qi9_C Vitamin B12 import ATP- 80.9 0.89 3E-05 32.8 2.4 19 75-93 25-43 (249)
347 3auy_A DNA double-strand break 80.9 0.74 2.5E-05 34.9 2.1 15 79-93 28-42 (371)
348 2yz2_A Putative ABC transporte 80.8 0.89 3.1E-05 33.0 2.4 19 75-93 32-50 (266)
349 3vkg_A Dynein heavy chain, cyt 80.7 1.4 4.8E-05 42.6 4.2 20 73-92 1301-1320(3245)
350 2zu0_C Probable ATP-dependent 80.6 0.9 3.1E-05 33.0 2.4 19 75-93 45-63 (267)
351 2pt5_A Shikimate kinase, SK; a 80.6 0.9 3.1E-05 29.8 2.2 16 78-93 2-17 (168)
352 2qt1_A Nicotinamide riboside k 80.6 0.73 2.5E-05 31.5 1.8 19 75-93 20-38 (207)
353 2ixe_A Antigen peptide transpo 80.5 0.92 3.1E-05 33.0 2.4 19 75-93 44-62 (271)
354 1g5t_A COB(I)alamin adenosyltr 80.5 2.7 9.4E-05 29.3 4.8 35 76-122 28-62 (196)
355 1a5t_A Delta prime, HOLB; zinc 80.4 1.4 4.7E-05 32.8 3.4 39 63-102 4-49 (334)
356 2pbr_A DTMP kinase, thymidylat 80.3 0.87 3E-05 30.4 2.1 15 79-93 3-17 (195)
357 1ry6_A Internal kinesin; kines 80.3 1.5 5.1E-05 33.6 3.6 19 75-93 82-102 (360)
358 3qks_A DNA double-strand break 80.2 0.9 3.1E-05 31.5 2.2 15 79-93 26-40 (203)
359 2olj_A Amino acid ABC transpor 80.2 0.96 3.3E-05 32.9 2.4 19 75-93 49-67 (263)
360 2nq2_C Hypothetical ABC transp 80.2 0.94 3.2E-05 32.6 2.3 19 75-93 30-48 (253)
361 1vpl_A ABC transporter, ATP-bi 80.1 0.97 3.3E-05 32.7 2.4 19 75-93 40-58 (256)
362 3hjh_A Transcription-repair-co 80.1 3 0.0001 33.1 5.4 44 75-133 13-56 (483)
363 2ihy_A ABC transporter, ATP-bi 79.8 0.99 3.4E-05 33.1 2.4 19 75-93 46-64 (279)
364 1ak2_A Adenylate kinase isoenz 79.8 1 3.5E-05 31.5 2.4 19 75-93 15-33 (233)
365 1htw_A HI0065; nucleotide-bind 79.8 0.88 3E-05 30.4 1.9 18 75-92 32-49 (158)
366 3pxi_A Negative regulator of g 79.8 1.6 5.3E-05 36.3 3.8 16 78-93 523-538 (758)
367 2p5t_B PEZT; postsegregational 79.7 0.57 1.9E-05 33.5 1.0 17 77-93 33-49 (253)
368 1tf7_A KAIC; homohexamer, hexa 79.7 1.9 6.7E-05 34.2 4.2 30 74-103 37-66 (525)
369 3cf2_A TER ATPase, transitiona 79.7 0.85 2.9E-05 38.6 2.2 17 77-93 239-255 (806)
370 2z0h_A DTMP kinase, thymidylat 79.6 0.95 3.2E-05 30.4 2.1 15 79-93 3-17 (197)
371 1zuh_A Shikimate kinase; alpha 79.5 1 3.4E-05 29.7 2.2 17 77-93 8-24 (168)
372 1vma_A Cell division protein F 79.4 2.4 8.2E-05 31.5 4.4 16 78-93 106-121 (306)
373 1r6b_X CLPA protein; AAA+, N-t 79.4 0.95 3.2E-05 37.5 2.4 19 75-93 206-224 (758)
374 3qkt_A DNA double-strand break 79.3 0.95 3.2E-05 33.8 2.2 16 79-94 26-41 (339)
375 3e2i_A Thymidine kinase; Zn-bi 79.2 2.3 7.8E-05 30.3 4.0 38 76-125 28-65 (219)
376 1q57_A DNA primase/helicase; d 79.2 1.6 5.3E-05 34.4 3.5 26 75-101 241-266 (503)
377 1rz3_A Hypothetical protein rb 79.0 0.99 3.4E-05 30.9 2.1 18 76-93 22-39 (201)
378 2dhr_A FTSH; AAA+ protein, hex 78.8 0.96 3.3E-05 36.1 2.2 48 37-93 26-81 (499)
379 3be4_A Adenylate kinase; malar 78.8 1.1 3.7E-05 31.1 2.2 18 76-93 5-22 (217)
380 1e4v_A Adenylate kinase; trans 78.8 1 3.5E-05 31.0 2.1 15 79-93 3-17 (214)
381 1ltq_A Polynucleotide kinase; 78.6 1.1 3.6E-05 32.6 2.2 16 78-93 4-19 (301)
382 1r6b_X CLPA protein; AAA+, N-t 78.5 1.8 6E-05 35.8 3.7 16 78-93 490-505 (758)
383 2xb4_A Adenylate kinase; ATP-b 78.3 1.1 3.8E-05 31.2 2.2 15 79-93 3-17 (223)
384 3tlx_A Adenylate kinase 2; str 78.0 1.1 3.9E-05 31.7 2.2 18 76-93 29-46 (243)
385 3nh6_A ATP-binding cassette SU 77.8 1.1 3.8E-05 33.4 2.1 19 75-93 79-97 (306)
386 3sr0_A Adenylate kinase; phosp 77.6 1.1 3.7E-05 31.4 1.9 15 79-93 3-17 (206)
387 1uf9_A TT1252 protein; P-loop, 77.6 1.2 4E-05 30.1 2.1 16 78-93 10-25 (203)
388 2bbs_A Cystic fibrosis transme 77.6 1.2 4.1E-05 32.8 2.3 19 75-93 63-81 (290)
389 1zu4_A FTSY; GTPase, signal re 77.5 3 0.0001 31.1 4.4 15 79-93 108-122 (320)
390 3cmu_A Protein RECA, recombina 77.3 2.7 9.3E-05 39.1 4.8 27 75-101 1080-1106(2050)
391 2pjz_A Hypothetical protein ST 77.1 1.2 4.3E-05 32.3 2.2 18 76-93 30-47 (263)
392 1vht_A Dephospho-COA kinase; s 77.1 1.3 4.4E-05 30.5 2.2 17 77-93 5-21 (218)
393 1qvr_A CLPB protein; coiled co 77.1 1.2 4.1E-05 37.6 2.4 16 78-93 590-605 (854)
394 2orv_A Thymidine kinase; TP4A 77.0 2.7 9.1E-05 30.3 3.9 39 75-125 18-56 (234)
395 1nij_A Hypothetical protein YJ 77.0 2.6 8.8E-05 31.2 4.0 15 79-93 7-21 (318)
396 2og2_A Putative signal recogni 77.0 1.1 3.7E-05 34.3 1.9 16 78-93 159-174 (359)
397 1tf7_A KAIC; homohexamer, hexa 76.5 3.4 0.00012 32.7 4.8 21 74-94 279-299 (525)
398 1svm_A Large T antigen; AAA+ f 76.4 1.4 4.9E-05 33.8 2.4 19 75-93 168-186 (377)
399 3umf_A Adenylate kinase; rossm 76.3 1.2 4.1E-05 31.5 1.9 18 76-93 29-46 (217)
400 2f1r_A Molybdopterin-guanine d 76.2 0.88 3E-05 30.9 1.1 16 78-93 4-19 (171)
401 3aez_A Pantothenate kinase; tr 76.2 1.2 4.1E-05 33.2 1.9 18 76-93 90-107 (312)
402 1sxj_B Activator 1 37 kDa subu 76.1 1.4 4.7E-05 31.9 2.2 16 78-93 44-59 (323)
403 3ice_A Transcription terminati 76.0 10 0.00034 29.7 7.1 34 61-94 156-192 (422)
404 2jeo_A Uridine-cytidine kinase 76.0 1.2 4.2E-05 31.4 1.9 19 75-93 24-42 (245)
405 2onk_A Molybdate/tungstate ABC 75.7 1.4 4.9E-05 31.4 2.2 17 77-93 25-41 (240)
406 1gtv_A TMK, thymidylate kinase 75.6 0.7 2.4E-05 31.5 0.5 15 79-93 3-17 (214)
407 2qen_A Walker-type ATPase; unk 75.5 2 6.9E-05 31.2 3.0 18 75-92 30-47 (350)
408 1odf_A YGR205W, hypothetical 3 75.4 1.5 5E-05 32.4 2.2 15 79-93 34-48 (290)
409 3e70_C DPA, signal recognition 75.3 1.3 4.3E-05 33.4 1.9 18 76-93 129-146 (328)
410 2vp4_A Deoxynucleoside kinase; 75.3 1.4 4.6E-05 30.9 1.9 17 76-92 20-36 (230)
411 3cmw_A Protein RECA, recombina 75.2 3.7 0.00013 37.6 5.0 27 75-101 33-59 (1706)
412 3io5_A Recombination and repai 75.1 3.6 0.00012 31.2 4.3 22 78-99 30-51 (333)
413 3sop_A Neuronal-specific septi 74.8 1.3 4.6E-05 32.1 1.9 15 78-92 4-18 (270)
414 1qvr_A CLPB protein; coiled co 74.3 1.6 5.3E-05 36.9 2.3 25 76-101 191-215 (854)
415 1z47_A CYSA, putative ABC-tran 74.1 1.8 6E-05 33.0 2.4 19 75-93 40-58 (355)
416 3fvq_A Fe(3+) IONS import ATP- 74.1 1.7 5.7E-05 33.2 2.3 18 75-92 29-46 (359)
417 2l8b_A Protein TRAI, DNA helic 73.9 10 0.00035 26.4 6.1 60 62-132 35-96 (189)
418 1pui_A ENGB, probable GTP-bind 73.9 1.4 4.9E-05 29.7 1.7 18 75-92 25-42 (210)
419 2vhj_A Ntpase P4, P4; non- hyd 73.8 2.2 7.4E-05 32.4 2.8 21 75-95 122-142 (331)
420 2v3c_C SRP54, signal recogniti 73.8 2.8 9.7E-05 32.7 3.6 16 78-93 101-116 (432)
421 2yyz_A Sugar ABC transporter, 73.7 1.8 6.2E-05 33.0 2.4 19 75-93 28-46 (359)
422 1q3t_A Cytidylate kinase; nucl 73.5 2 6.8E-05 30.1 2.5 19 75-93 15-33 (236)
423 3ake_A Cytidylate kinase; CMP 73.5 1.8 6.3E-05 29.2 2.2 16 78-93 4-19 (208)
424 4eaq_A DTMP kinase, thymidylat 73.3 1.4 4.8E-05 31.1 1.6 19 75-93 25-43 (229)
425 2it1_A 362AA long hypothetical 73.3 1.9 6.4E-05 33.0 2.4 19 75-93 28-46 (362)
426 1w36_B RECB, exodeoxyribonucle 73.1 9.2 0.00032 33.5 6.9 55 78-132 18-72 (1180)
427 1uj2_A Uridine-cytidine kinase 73.0 1.9 6.4E-05 30.6 2.2 16 78-93 24-39 (252)
428 3gd7_A Fusion complex of cysti 73.0 1.8 6.2E-05 33.4 2.3 19 75-93 46-64 (390)
429 3zvl_A Bifunctional polynucleo 72.9 1.8 6E-05 33.4 2.2 16 78-93 260-275 (416)
430 2xxa_A Signal recognition part 72.8 4.9 0.00017 31.3 4.8 16 78-93 102-117 (433)
431 1g29_1 MALK, maltose transport 72.8 2 6.7E-05 32.9 2.4 19 75-93 28-46 (372)
432 2npi_A Protein CLP1; CLP1-PCF1 72.3 2.2 7.4E-05 33.6 2.6 20 74-93 136-155 (460)
433 1sq5_A Pantothenate kinase; P- 72.3 1.6 5.5E-05 32.1 1.8 18 76-93 80-97 (308)
434 3tqc_A Pantothenate kinase; bi 72.2 3.6 0.00012 30.8 3.7 22 79-102 95-116 (321)
435 2i1q_A DNA repair and recombin 72.2 2.5 8.5E-05 31.1 2.8 20 76-95 98-117 (322)
436 4a82_A Cystic fibrosis transme 72.1 2 6.8E-05 34.6 2.4 19 75-93 366-384 (578)
437 3rlf_A Maltose/maltodextrin im 72.0 2.1 7.1E-05 33.0 2.4 18 75-92 28-45 (381)
438 1v43_A Sugar-binding transport 71.9 2.1 7.2E-05 32.8 2.4 19 75-93 36-54 (372)
439 1ypw_A Transitional endoplasmi 71.9 1.2 4E-05 37.6 1.0 54 37-93 472-528 (806)
440 2f6r_A COA synthase, bifunctio 71.9 1.9 6.5E-05 31.4 2.1 16 78-93 77-92 (281)
441 3d31_A Sulfate/molybdate ABC t 71.8 1.7 5.7E-05 33.0 1.8 19 75-93 25-43 (348)
442 3bs4_A Uncharacterized protein 71.7 4.4 0.00015 29.5 4.0 38 75-124 20-57 (260)
443 3r20_A Cytidylate kinase; stru 71.5 2.1 7.2E-05 30.6 2.2 18 76-93 9-26 (233)
444 1v5w_A DMC1, meiotic recombina 71.4 2.7 9.2E-05 31.5 2.9 18 77-94 123-140 (343)
445 1w5s_A Origin recognition comp 71.3 2.5 8.5E-05 31.7 2.7 17 77-93 51-69 (412)
446 2yhs_A FTSY, cell division pro 71.3 1.8 6E-05 34.7 1.9 16 78-93 295-310 (503)
447 2zpa_A Uncharacterized protein 71.2 4.7 0.00016 33.4 4.5 55 61-130 175-231 (671)
448 2grj_A Dephospho-COA kinase; T 71.0 2.2 7.4E-05 29.4 2.1 16 78-93 14-29 (192)
449 2f9l_A RAB11B, member RAS onco 71.0 2.3 7.8E-05 28.6 2.2 15 78-92 7-21 (199)
450 1e69_A Chromosome segregation 70.6 1.8 6.3E-05 32.0 1.8 16 78-93 26-41 (322)
451 3b5x_A Lipid A export ATP-bind 70.3 2.3 7.7E-05 34.3 2.4 19 75-93 368-386 (582)
452 1pzn_A RAD51, DNA repair and r 70.3 2.8 9.7E-05 31.5 2.8 19 77-95 132-150 (349)
453 3tqf_A HPR(Ser) kinase; transf 70.2 2.1 7.3E-05 29.6 1.9 19 75-93 15-33 (181)
454 1ls1_A Signal recognition part 70.0 5.9 0.0002 29.0 4.4 18 76-93 98-115 (295)
455 3b60_A Lipid A export ATP-bind 69.8 2.3 7.8E-05 34.3 2.3 19 75-93 368-386 (582)
456 1j8m_F SRP54, signal recogniti 69.6 5.4 0.00018 29.4 4.1 16 78-93 100-115 (297)
457 3p32_A Probable GTPase RV1496/ 69.4 6.6 0.00023 29.4 4.7 16 78-93 81-96 (355)
458 1oix_A RAS-related protein RAB 69.4 2.4 8.3E-05 28.4 2.1 15 78-92 31-45 (191)
459 2h92_A Cytidylate kinase; ross 69.3 3.1 0.0001 28.5 2.6 18 76-93 3-20 (219)
460 3tui_C Methionine import ATP-b 68.9 2.7 9.2E-05 32.2 2.4 18 75-92 53-70 (366)
461 1oxx_K GLCV, glucose, ABC tran 68.8 1.6 5.4E-05 33.2 1.1 19 75-93 30-48 (353)
462 1ko7_A HPR kinase/phosphatase; 68.8 15 0.00053 27.4 6.5 48 46-93 92-161 (314)
463 2o5v_A DNA replication and rep 68.7 2.5 8.6E-05 32.1 2.2 17 78-94 28-44 (359)
464 2dyk_A GTP-binding protein; GT 68.6 2.8 9.7E-05 26.6 2.2 14 78-91 3-16 (161)
465 4tmk_A Protein (thymidylate ki 68.5 2.5 8.5E-05 29.6 2.0 19 75-93 2-20 (213)
466 2ged_A SR-beta, signal recogni 68.4 2.8 9.6E-05 27.7 2.2 16 77-92 49-64 (193)
467 3qf4_B Uncharacterized ABC tra 68.4 2.4 8.1E-05 34.3 2.1 19 75-93 380-398 (598)
468 1w1w_A Structural maintenance 68.4 2.6 9E-05 32.4 2.3 18 76-93 26-43 (430)
469 3qf4_A ABC transporter, ATP-bi 68.0 2.7 9.2E-05 33.9 2.4 19 75-93 368-386 (587)
470 1nrj_B SR-beta, signal recogni 67.8 2.9 9.9E-05 28.4 2.2 16 77-92 13-28 (218)
471 3lda_A DNA repair protein RAD5 67.7 4.1 0.00014 31.4 3.3 26 35-60 80-105 (400)
472 2yl4_A ATP-binding cassette SU 67.5 2.4 8.3E-05 34.2 2.0 19 75-93 369-387 (595)
473 2j37_W Signal recognition part 67.4 7.2 0.00025 31.1 4.7 16 78-93 103-118 (504)
474 2ce2_X GTPase HRAS; signaling 67.2 3 0.0001 26.4 2.1 15 78-92 5-19 (166)
475 2rcn_A Probable GTPase ENGC; Y 67.2 4.2 0.00014 31.0 3.2 22 71-92 210-231 (358)
476 1lw7_A Transcriptional regulat 67.2 2.3 7.7E-05 32.0 1.7 18 76-93 170-187 (365)
477 3cr8_A Sulfate adenylyltranfer 67.0 5.2 0.00018 32.2 3.8 50 44-93 328-386 (552)
478 3cmw_A Protein RECA, recombina 67.0 7.3 0.00025 35.8 5.0 25 76-100 383-407 (1706)
479 2yv5_A YJEQ protein; hydrolase 66.9 4.7 0.00016 29.6 3.4 25 69-93 158-182 (302)
480 2wji_A Ferrous iron transport 66.7 3.3 0.00011 26.9 2.2 15 78-92 5-19 (165)
481 1z2a_A RAS-related protein RAB 66.7 3.3 0.00011 26.4 2.2 14 78-91 7-20 (168)
482 4edh_A DTMP kinase, thymidylat 66.5 2.5 8.4E-05 29.6 1.6 20 74-93 4-23 (213)
483 2ffh_A Protein (FFH); SRP54, s 66.2 7.1 0.00024 30.4 4.3 16 78-93 100-115 (425)
484 3tmk_A Thymidylate kinase; pho 66.1 2.9 9.9E-05 29.4 1.9 19 75-93 4-22 (216)
485 2fna_A Conserved hypothetical 65.8 2.7 9.1E-05 30.6 1.8 17 77-93 31-47 (357)
486 1ky3_A GTP-binding protein YPT 65.3 3.6 0.00012 26.7 2.2 15 78-92 10-24 (182)
487 1ihu_A Arsenical pump-driving 65.0 8.8 0.0003 30.7 4.8 20 77-96 9-28 (589)
488 2zej_A Dardarin, leucine-rich 65.0 3.6 0.00012 27.2 2.2 15 78-92 4-18 (184)
489 1p5z_B DCK, deoxycytidine kina 64.8 2.7 9.3E-05 29.9 1.6 19 75-93 23-41 (263)
490 1ek0_A Protein (GTP-binding pr 64.7 3.8 0.00013 26.1 2.2 15 78-92 5-19 (170)
491 2gj8_A MNME, tRNA modification 64.6 3 0.0001 27.4 1.7 16 76-91 4-19 (172)
492 1u0l_A Probable GTPase ENGC; p 64.4 5.2 0.00018 29.3 3.2 21 72-92 165-185 (301)
493 1z0j_A RAB-22, RAS-related pro 64.4 3.8 0.00013 26.2 2.2 14 78-91 8-21 (170)
494 3lv8_A DTMP kinase, thymidylat 64.4 3.3 0.00011 29.5 2.0 20 74-93 25-44 (236)
495 2wjg_A FEOB, ferrous iron tran 64.3 3.8 0.00013 26.9 2.2 15 78-92 9-23 (188)
496 1a7j_A Phosphoribulokinase; tr 64.3 2 6.8E-05 31.5 0.8 15 79-93 8-22 (290)
497 3zq6_A Putative arsenical pump 64.2 9.9 0.00034 28.0 4.7 17 79-95 17-33 (324)
498 2ocp_A DGK, deoxyguanosine kin 64.2 2.7 9.2E-05 29.5 1.5 17 76-92 2-18 (241)
499 1u8z_A RAS-related protein RAL 64.2 3.9 0.00013 25.9 2.2 15 78-92 6-20 (168)
500 1kao_A RAP2A; GTP-binding prot 63.9 4 0.00014 25.9 2.2 15 78-92 5-19 (167)
No 1
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.90 E-value=7.6e-24 Score=159.98 Aligned_cols=89 Identities=27% Similarity=0.527 Sum_probs=81.9
Q ss_pred CCCCCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcC--CCeEEEcCCCCchhHHhHHHHHHHHHhhcCCCCCCCC
Q psy7268 36 IDLGTFEDTGLAPEIIDIFTKRGLTTPTEIQKYSIPTLLSG--KSAILVAETGCGKTLSFLAPLVQQILTWKSRPEYKPE 113 (134)
Q Consensus 36 ~~~~~f~~~~l~~~i~~~l~~~g~~~~t~iQ~~~i~~~~~g--~dvli~a~tGsGKT~~~~lpil~~~~~~~~~~~~~~~ 113 (134)
..+.+|++++|++.++++|.++||..|+++|.++||.++.| +|+++++|||||||++|++|+++++....
T Consensus 89 ~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~-------- 160 (300)
T 3fmo_B 89 YSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPAN-------- 160 (300)
T ss_dssp CCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTTS--------
T ss_pred CCcCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhccC--------
Confidence 45689999999999999999999999999999999999987 99999999999999999999999885432
Q ss_pred CCCcEEEEEcCcHHHHHHhc
Q psy7268 114 LNAPLALIITPGRELVFQIG 133 (134)
Q Consensus 114 ~~~~~~lil~Pt~~La~Qi~ 133 (134)
.++++||++|||+||.|++
T Consensus 161 -~~~~~lil~PtreLa~Q~~ 179 (300)
T 3fmo_B 161 -KYPQCLCLSPTYELALQTG 179 (300)
T ss_dssp -CSCCEEEECSSHHHHHHHH
T ss_pred -CCceEEEEcCcHHHHHHHH
Confidence 5778999999999999985
No 2
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.90 E-value=2.6e-23 Score=151.86 Aligned_cols=96 Identities=31% Similarity=0.502 Sum_probs=85.7
Q ss_pred cCCCCCCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCeEEEcCCCCchhHHhHHHHHHHHHhhcCCCCCCCC
Q psy7268 34 SRIDLGTFEDTGLAPEIIDIFTKRGLTTPTEIQKYSIPTLLSGKSAILVAETGCGKTLSFLAPLVQQILTWKSRPEYKPE 113 (134)
Q Consensus 34 ~~~~~~~f~~~~l~~~i~~~l~~~g~~~~t~iQ~~~i~~~~~g~dvli~a~tGsGKT~~~~lpil~~~~~~~~~~~~~~~ 113 (134)
...++.+|+++++++.+++++.+.||..|+++|.++|+.+++|+|+++++|||+|||++|++|++..+..... ...
T Consensus 24 ~p~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~----~~~ 99 (242)
T 3fe2_A 24 CPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPF----LER 99 (242)
T ss_dssp CCCCCSSTTTTTCCHHHHHHHHTTTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCC----CCT
T ss_pred CCCccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhccc----ccc
Confidence 4567889999999999999999999999999999999999999999999999999999999999999875321 112
Q ss_pred CCCcEEEEEcCcHHHHHHhc
Q psy7268 114 LNAPLALIITPGRELVFQIG 133 (134)
Q Consensus 114 ~~~~~~lil~Pt~~La~Qi~ 133 (134)
..++++||++||++|+.|++
T Consensus 100 ~~~~~~lil~Pt~~L~~Q~~ 119 (242)
T 3fe2_A 100 GDGPICLVLAPTRELAQQVQ 119 (242)
T ss_dssp TCCCSEEEECSSHHHHHHHH
T ss_pred CCCCEEEEEeCcHHHHHHHH
Confidence 25778999999999999985
No 3
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=99.89 E-value=5.4e-23 Score=161.79 Aligned_cols=95 Identities=39% Similarity=0.578 Sum_probs=85.8
Q ss_pred CCCCCCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCeEEEcCCCCchhHHhHHHHHHHHHhhcCCCCCCCCC
Q psy7268 35 RIDLGTFEDTGLAPEIIDIFTKRGLTTPTEIQKYSIPTLLSGKSAILVAETGCGKTLSFLAPLVQQILTWKSRPEYKPEL 114 (134)
Q Consensus 35 ~~~~~~f~~~~l~~~i~~~l~~~g~~~~t~iQ~~~i~~~~~g~dvli~a~tGsGKT~~~~lpil~~~~~~~~~~~~~~~~ 114 (134)
..++.+|++++|++.++++|.+.||+.|+++|+++||.+++|+|++++++||||||++|++|+++++...... ...
T Consensus 52 p~~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~----~~~ 127 (434)
T 2db3_A 52 PQPIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHE----LEL 127 (434)
T ss_dssp CCCCCCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCC----CCT
T ss_pred CCCcCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccc----ccc
Confidence 4678899999999999999999999999999999999999999999999999999999999999999864321 123
Q ss_pred CCcEEEEEcCcHHHHHHhc
Q psy7268 115 NAPLALIITPGRELVFQIG 133 (134)
Q Consensus 115 ~~~~~lil~Pt~~La~Qi~ 133 (134)
.++++||++|||+|+.|++
T Consensus 128 ~~~~~lil~PtreLa~Q~~ 146 (434)
T 2db3_A 128 GRPQVVIVSPTRELAIQIF 146 (434)
T ss_dssp TCCSEEEECSSHHHHHHHH
T ss_pred CCccEEEEecCHHHHHHHH
Confidence 5789999999999999986
No 4
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.89 E-value=3.9e-23 Score=149.36 Aligned_cols=102 Identities=31% Similarity=0.493 Sum_probs=85.5
Q ss_pred CcccccCCCCCCccc-CCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCeEEEcCCCCchhHHhHHHHHHHHHhhcCC
Q psy7268 29 GYEAVSRIDLGTFED-TGLAPEIIDIFTKRGLTTPTEIQKYSIPTLLSGKSAILVAETGCGKTLSFLAPLVQQILTWKSR 107 (134)
Q Consensus 29 ~~~~~~~~~~~~f~~-~~l~~~i~~~l~~~g~~~~t~iQ~~~i~~~~~g~dvli~a~tGsGKT~~~~lpil~~~~~~~~~ 107 (134)
+.......+..+|++ +++++.+++++.+.||..|+++|.++++.+++|+|+++++|||+|||++|++|++..+......
T Consensus 9 ~~~~~~p~p~~~f~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~ 88 (228)
T 3iuy_A 9 GEKRLIPKPTCRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPIS 88 (228)
T ss_dssp SSCCCCCCCCCSHHHHHTTCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC-----
T ss_pred CccCcCCCChhhHhhhhccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccch
Confidence 334555678889999 8999999999999999999999999999999999999999999999999999999988643211
Q ss_pred CCCCCCCCCcEEEEEcCcHHHHHHhc
Q psy7268 108 PEYKPELNAPLALIITPGRELVFQIG 133 (134)
Q Consensus 108 ~~~~~~~~~~~~lil~Pt~~La~Qi~ 133 (134)
.....++++||++||++|+.|++
T Consensus 89 ---~~~~~~~~~lil~Pt~~L~~q~~ 111 (228)
T 3iuy_A 89 ---REQRNGPGMLVLTPTRELALHVE 111 (228)
T ss_dssp -------CCCSEEEECSSHHHHHHHH
T ss_pred ---hhccCCCcEEEEeCCHHHHHHHH
Confidence 11225788999999999999986
No 5
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.89 E-value=1.2e-22 Score=147.55 Aligned_cols=96 Identities=31% Similarity=0.439 Sum_probs=84.8
Q ss_pred ccCCCCCCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCeEEEcCCCCchhHHhHHHHHHHHHhhcCCCCCCC
Q psy7268 33 VSRIDLGTFEDTGLAPEIIDIFTKRGLTTPTEIQKYSIPTLLSGKSAILVAETGCGKTLSFLAPLVQQILTWKSRPEYKP 112 (134)
Q Consensus 33 ~~~~~~~~f~~~~l~~~i~~~l~~~g~~~~t~iQ~~~i~~~~~g~dvli~a~tGsGKT~~~~lpil~~~~~~~~~~~~~~ 112 (134)
.+..++.+|+++++++.+++.|.+.||..|+++|.++++.+++|+|+++++|||+|||++|++|+++.+..... .
T Consensus 19 ~~~~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~-----~ 93 (236)
T 2pl3_A 19 INVNEITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQW-----T 93 (236)
T ss_dssp CCGGGCSBGGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTC-----C
T ss_pred CCCcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcc-----c
Confidence 33456778999999999999999999999999999999999999999999999999999999999999875321 1
Q ss_pred CCCCcEEEEEcCcHHHHHHhc
Q psy7268 113 ELNAPLALIITPGRELVFQIG 133 (134)
Q Consensus 113 ~~~~~~~lil~Pt~~La~Qi~ 133 (134)
...++++||++||++|+.|++
T Consensus 94 ~~~~~~~lil~Pt~~L~~q~~ 114 (236)
T 2pl3_A 94 STDGLGVLIISPTRELAYQTF 114 (236)
T ss_dssp GGGCCCEEEECSSHHHHHHHH
T ss_pred ccCCceEEEEeCCHHHHHHHH
Confidence 124678999999999999985
No 6
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.88 E-value=5.5e-23 Score=147.89 Aligned_cols=88 Identities=34% Similarity=0.456 Sum_probs=80.0
Q ss_pred CCCCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCeEEEcCCCCchhHHhHHHHHHHHHhhcCCCCCCCCCCC
Q psy7268 37 DLGTFEDTGLAPEIIDIFTKRGLTTPTEIQKYSIPTLLSGKSAILVAETGCGKTLSFLAPLVQQILTWKSRPEYKPELNA 116 (134)
Q Consensus 37 ~~~~f~~~~l~~~i~~~l~~~g~~~~t~iQ~~~i~~~~~g~dvli~a~tGsGKT~~~~lpil~~~~~~~~~~~~~~~~~~ 116 (134)
+..+|++++|++.+++++.+.||..|+++|.++++.+++|+|+++++|||+|||++|++|+++.+.... .+
T Consensus 2 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~---------~~ 72 (219)
T 1q0u_A 2 AETQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPER---------AE 72 (219)
T ss_dssp --CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTTS---------CS
T ss_pred CCCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhCc---------CC
Confidence 456899999999999999999999999999999999999999999999999999999999999875422 46
Q ss_pred cEEEEEcCcHHHHHHhc
Q psy7268 117 PLALIITPGRELVFQIG 133 (134)
Q Consensus 117 ~~~lil~Pt~~La~Qi~ 133 (134)
.++||++||++|+.|++
T Consensus 73 ~~~lil~Pt~~L~~q~~ 89 (219)
T 1q0u_A 73 VQAVITAPTRELATQIY 89 (219)
T ss_dssp CCEEEECSSHHHHHHHH
T ss_pred ceEEEEcCcHHHHHHHH
Confidence 78999999999999985
No 7
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.88 E-value=1e-22 Score=148.59 Aligned_cols=93 Identities=33% Similarity=0.467 Sum_probs=83.8
Q ss_pred ccCCCCCCcccC----CCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCeEEEcCCCCchhHHhHHHHHHHHHhhcCCC
Q psy7268 33 VSRIDLGTFEDT----GLAPEIIDIFTKRGLTTPTEIQKYSIPTLLSGKSAILVAETGCGKTLSFLAPLVQQILTWKSRP 108 (134)
Q Consensus 33 ~~~~~~~~f~~~----~l~~~i~~~l~~~g~~~~t~iQ~~~i~~~~~g~dvli~a~tGsGKT~~~~lpil~~~~~~~~~~ 108 (134)
....++.+|+++ ++++.+++++.+.||..|+++|.++++.+++|+|+++++|||+|||++|++|++..+....
T Consensus 19 ~~p~~~~~f~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~--- 95 (245)
T 3dkp_A 19 DLPDPIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPA--- 95 (245)
T ss_dssp SCCCCCSSHHHHHHHHCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCSCC---
T ss_pred CCCCcccCHHHhhhccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhhcc---
Confidence 345678899887 8999999999999999999999999999999999999999999999999999999985422
Q ss_pred CCCCCCCCcEEEEEcCcHHHHHHhc
Q psy7268 109 EYKPELNAPLALIITPGRELVFQIG 133 (134)
Q Consensus 109 ~~~~~~~~~~~lil~Pt~~La~Qi~ 133 (134)
..++++||++||++|+.|++
T Consensus 96 -----~~~~~~lil~Pt~~L~~q~~ 115 (245)
T 3dkp_A 96 -----NKGFRALIISPTRELASQIH 115 (245)
T ss_dssp -----SSSCCEEEECSSHHHHHHHH
T ss_pred -----cCCceEEEEeCCHHHHHHHH
Confidence 25678999999999999986
No 8
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.88 E-value=8.1e-23 Score=150.37 Aligned_cols=90 Identities=39% Similarity=0.589 Sum_probs=83.0
Q ss_pred CCCCCCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCeEEEcCCCCchhHHhHHHHHHHHHhhcCCCCCCCCC
Q psy7268 35 RIDLGTFEDTGLAPEIIDIFTKRGLTTPTEIQKYSIPTLLSGKSAILVAETGCGKTLSFLAPLVQQILTWKSRPEYKPEL 114 (134)
Q Consensus 35 ~~~~~~f~~~~l~~~i~~~l~~~g~~~~t~iQ~~~i~~~~~g~dvli~a~tGsGKT~~~~lpil~~~~~~~~~~~~~~~~ 114 (134)
..+..+|+++++++.+++++.++||..|+++|.++++.+++|+|+++++|||+|||++|++|+++.+....
T Consensus 39 ~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~--------- 109 (249)
T 3ber_A 39 EEETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETP--------- 109 (249)
T ss_dssp HHHHCCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHSC---------
T ss_pred ccccCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcCC---------
Confidence 34567899999999999999999999999999999999999999999999999999999999999987642
Q ss_pred CCcEEEEEcCcHHHHHHhc
Q psy7268 115 NAPLALIITPGRELVFQIG 133 (134)
Q Consensus 115 ~~~~~lil~Pt~~La~Qi~ 133 (134)
.++++||++||++|+.|++
T Consensus 110 ~~~~~lil~Ptr~L~~q~~ 128 (249)
T 3ber_A 110 QRLFALVLTPTRELAFQIS 128 (249)
T ss_dssp CSSCEEEECSSHHHHHHHH
T ss_pred CCceEEEEeCCHHHHHHHH
Confidence 4678999999999999986
No 9
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.88 E-value=1.1e-22 Score=147.64 Aligned_cols=93 Identities=26% Similarity=0.360 Sum_probs=80.1
Q ss_pred cccCCCCCCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCeEEEcCCCCchhHHhHHHHHHHHHhhcCCCCCC
Q psy7268 32 AVSRIDLGTFEDTGLAPEIIDIFTKRGLTTPTEIQKYSIPTLLSGKSAILVAETGCGKTLSFLAPLVQQILTWKSRPEYK 111 (134)
Q Consensus 32 ~~~~~~~~~f~~~~l~~~i~~~l~~~g~~~~t~iQ~~~i~~~~~g~dvli~a~tGsGKT~~~~lpil~~~~~~~~~~~~~ 111 (134)
+....+..+|+++++++.+++++.+.||..|+++|.++++.+++|+|+++++|||+|||++|++|++..+....
T Consensus 17 ~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~------ 90 (230)
T 2oxc_A 17 DVLLAEPADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLEN------ 90 (230)
T ss_dssp -------CCGGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTS------
T ss_pred CCCCCCCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcC------
Confidence 33445667899999999999999999999999999999999999999999999999999999999999875422
Q ss_pred CCCCCcEEEEEcCcHHHHHHhc
Q psy7268 112 PELNAPLALIITPGRELVFQIG 133 (134)
Q Consensus 112 ~~~~~~~~lil~Pt~~La~Qi~ 133 (134)
.+.++||++||++|+.|++
T Consensus 91 ---~~~~~lil~Pt~~L~~q~~ 109 (230)
T 2oxc_A 91 ---LSTQILILAPTREIAVQIH 109 (230)
T ss_dssp ---CSCCEEEECSSHHHHHHHH
T ss_pred ---CCceEEEEeCCHHHHHHHH
Confidence 4678999999999999985
No 10
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.88 E-value=3.8e-23 Score=151.64 Aligned_cols=98 Identities=31% Similarity=0.488 Sum_probs=83.9
Q ss_pred CCCCCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCeEEEcCCCCchhHHhHHHHHHHHHhhcCCCCCCCCCC
Q psy7268 36 IDLGTFEDTGLAPEIIDIFTKRGLTTPTEIQKYSIPTLLSGKSAILVAETGCGKTLSFLAPLVQQILTWKSRPEYKPELN 115 (134)
Q Consensus 36 ~~~~~f~~~~l~~~i~~~l~~~g~~~~t~iQ~~~i~~~~~g~dvli~a~tGsGKT~~~~lpil~~~~~~~~~~~~~~~~~ 115 (134)
.++.+|++++|++.++++|.+.||..|+++|.++++.+++|+|+++++|||+|||++|++|+++.+..............
T Consensus 20 ~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~ 99 (253)
T 1wrb_A 20 NVIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTA 99 (253)
T ss_dssp SCCCSSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCB
T ss_pred CccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccC
Confidence 47789999999999999999999999999999999999999999999999999999999999999876432211112234
Q ss_pred CcEEEEEcCcHHHHHHhc
Q psy7268 116 APLALIITPGRELVFQIG 133 (134)
Q Consensus 116 ~~~~lil~Pt~~La~Qi~ 133 (134)
++++||++||++|+.|++
T Consensus 100 ~~~~lil~Pt~~L~~q~~ 117 (253)
T 1wrb_A 100 YPKCLILAPTRELAIQIL 117 (253)
T ss_dssp CCSEEEECSSHHHHHHHH
T ss_pred CceEEEEECCHHHHHHHH
Confidence 678999999999999975
No 11
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.88 E-value=7.7e-23 Score=149.10 Aligned_cols=93 Identities=28% Similarity=0.385 Sum_probs=82.0
Q ss_pred cccCCCCCCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCeEEEcCCCCchhHHhHHHHHHHHHhhcCCCCCC
Q psy7268 32 AVSRIDLGTFEDTGLAPEIIDIFTKRGLTTPTEIQKYSIPTLLSGKSAILVAETGCGKTLSFLAPLVQQILTWKSRPEYK 111 (134)
Q Consensus 32 ~~~~~~~~~f~~~~l~~~i~~~l~~~g~~~~t~iQ~~~i~~~~~g~dvli~a~tGsGKT~~~~lpil~~~~~~~~~~~~~ 111 (134)
.....+..+|++++|++.+++++.+.||..|+++|.++++.+++|+|+++++|||+|||++|++|+++.+....
T Consensus 23 ~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~~------ 96 (237)
T 3bor_A 23 SNWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEF------ 96 (237)
T ss_dssp ----CCCCSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTTS------
T ss_pred CCCCCccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcC------
Confidence 33445678999999999999999999999999999999999999999999999999999999999999875321
Q ss_pred CCCCCcEEEEEcCcHHHHHHhc
Q psy7268 112 PELNAPLALIITPGRELVFQIG 133 (134)
Q Consensus 112 ~~~~~~~~lil~Pt~~La~Qi~ 133 (134)
.+.++||++||++|+.|++
T Consensus 97 ---~~~~~lil~Pt~~L~~q~~ 115 (237)
T 3bor_A 97 ---KETQALVLAPTRELAQQIQ 115 (237)
T ss_dssp ---CSCCEEEECSSHHHHHHHH
T ss_pred ---CCceEEEEECcHHHHHHHH
Confidence 4678999999999999985
No 12
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.88 E-value=1.4e-22 Score=144.01 Aligned_cols=86 Identities=35% Similarity=0.537 Sum_probs=79.4
Q ss_pred CCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCeEEEcCCCCchhHHhHHHHHHHHHhhcCCCCCCCCCCCcE
Q psy7268 39 GTFEDTGLAPEIIDIFTKRGLTTPTEIQKYSIPTLLSGKSAILVAETGCGKTLSFLAPLVQQILTWKSRPEYKPELNAPL 118 (134)
Q Consensus 39 ~~f~~~~l~~~i~~~l~~~g~~~~t~iQ~~~i~~~~~g~dvli~a~tGsGKT~~~~lpil~~~~~~~~~~~~~~~~~~~~ 118 (134)
.+|++++|++++++++.+.||..|+++|.++++.+++|+|+++++|||+|||++|++|++..+.... .+++
T Consensus 3 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~---------~~~~ 73 (206)
T 1vec_A 3 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKK---------DNIQ 73 (206)
T ss_dssp SSGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTTS---------CSCC
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhcccC---------CCee
Confidence 4799999999999999999999999999999999999999999999999999999999999875322 5678
Q ss_pred EEEEcCcHHHHHHhc
Q psy7268 119 ALIITPGRELVFQIG 133 (134)
Q Consensus 119 ~lil~Pt~~La~Qi~ 133 (134)
+||++|+++|+.|++
T Consensus 74 ~lil~Pt~~L~~q~~ 88 (206)
T 1vec_A 74 AMVIVPTRELALQVS 88 (206)
T ss_dssp EEEECSCHHHHHHHH
T ss_pred EEEEeCcHHHHHHHH
Confidence 999999999999975
No 13
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.88 E-value=2.3e-22 Score=144.64 Aligned_cols=91 Identities=31% Similarity=0.440 Sum_probs=82.9
Q ss_pred cCCCCCCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCeEEEcCCCCchhHHhHHHHHHHHHhhcCCCCCCCC
Q psy7268 34 SRIDLGTFEDTGLAPEIIDIFTKRGLTTPTEIQKYSIPTLLSGKSAILVAETGCGKTLSFLAPLVQQILTWKSRPEYKPE 113 (134)
Q Consensus 34 ~~~~~~~f~~~~l~~~i~~~l~~~g~~~~t~iQ~~~i~~~~~g~dvli~a~tGsGKT~~~~lpil~~~~~~~~~~~~~~~ 113 (134)
...++.+|+++++++.+++.+.+.||..|+++|.++++.+++|+|+++++|||+|||++|++|+++.+....
T Consensus 9 ~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~-------- 80 (224)
T 1qde_A 9 YDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSV-------- 80 (224)
T ss_dssp CCCCCCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTC--------
T ss_pred cCcccCChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhccC--------
Confidence 345677899999999999999999999999999999999999999999999999999999999999885422
Q ss_pred CCCcEEEEEcCcHHHHHHhc
Q psy7268 114 LNAPLALIITPGRELVFQIG 133 (134)
Q Consensus 114 ~~~~~~lil~Pt~~La~Qi~ 133 (134)
.+.++||++|+++|+.|++
T Consensus 81 -~~~~~lil~Pt~~L~~q~~ 99 (224)
T 1qde_A 81 -KAPQALMLAPTRELALQIQ 99 (224)
T ss_dssp -CSCCEEEECSSHHHHHHHH
T ss_pred -CCceEEEEECCHHHHHHHH
Confidence 5678999999999999975
No 14
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.87 E-value=6.3e-22 Score=142.16 Aligned_cols=89 Identities=31% Similarity=0.480 Sum_probs=79.0
Q ss_pred CCCCCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCeEEEcCCCCchhHHhHHHHHHHHHhhcCCCCCCCCCC
Q psy7268 36 IDLGTFEDTGLAPEIIDIFTKRGLTTPTEIQKYSIPTLLSGKSAILVAETGCGKTLSFLAPLVQQILTWKSRPEYKPELN 115 (134)
Q Consensus 36 ~~~~~f~~~~l~~~i~~~l~~~g~~~~t~iQ~~~i~~~~~g~dvli~a~tGsGKT~~~~lpil~~~~~~~~~~~~~~~~~ 115 (134)
....+|++++|++.++++|.+.||+.|+++|.++++.+++|+|+++++|||+|||++|++|++..+... ..
T Consensus 11 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~---------~~ 81 (220)
T 1t6n_A 11 IHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPV---------TG 81 (220)
T ss_dssp ---CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCC---------TT
T ss_pred ccCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhcc---------CC
Confidence 344679999999999999999999999999999999999999999999999999999999999887432 14
Q ss_pred CcEEEEEcCcHHHHHHhc
Q psy7268 116 APLALIITPGRELVFQIG 133 (134)
Q Consensus 116 ~~~~lil~Pt~~La~Qi~ 133 (134)
++++||++|+++|+.|++
T Consensus 82 ~~~~lil~Pt~~L~~q~~ 99 (220)
T 1t6n_A 82 QVSVLVMCHTRELAFQIS 99 (220)
T ss_dssp CCCEEEECSCHHHHHHHH
T ss_pred CEEEEEEeCCHHHHHHHH
Confidence 568999999999999975
No 15
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=99.86 E-value=1.3e-21 Score=151.28 Aligned_cols=99 Identities=30% Similarity=0.476 Sum_probs=84.6
Q ss_pred CCCCCCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCeEEEcCCCCchhHHhHHHHHHHHHhhcCC-------
Q psy7268 35 RIDLGTFEDTGLAPEIIDIFTKRGLTTPTEIQKYSIPTLLSGKSAILVAETGCGKTLSFLAPLVQQILTWKSR------- 107 (134)
Q Consensus 35 ~~~~~~f~~~~l~~~i~~~l~~~g~~~~t~iQ~~~i~~~~~g~dvli~a~tGsGKT~~~~lpil~~~~~~~~~------- 107 (134)
..++.+|++++|++.++++|.+.||..|+++|.++|+.++.|+|+++++|||+|||++|++|+++.+......
T Consensus 11 p~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~ 90 (417)
T 2i4i_A 11 PPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMK 90 (417)
T ss_dssp CCCCSSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred CcccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhccc
Confidence 4667899999999999999999999999999999999999999999999999999999999999998754311
Q ss_pred --CCCCCCCCCcEEEEEcCcHHHHHHhc
Q psy7268 108 --PEYKPELNAPLALIITPGRELVFQIG 133 (134)
Q Consensus 108 --~~~~~~~~~~~~lil~Pt~~La~Qi~ 133 (134)
........++++||++||++|+.|++
T Consensus 91 ~~~~~~~~~~~~~~lil~Pt~~L~~q~~ 118 (417)
T 2i4i_A 91 ENGRYGRRKQYPISLVLAPTRELAVQIY 118 (417)
T ss_dssp HCBTTBSCSBCCSEEEECSSHHHHHHHH
T ss_pred cccccccccCCccEEEECCcHHHHHHHH
Confidence 00011123578999999999999986
No 16
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.86 E-value=1.6e-21 Score=138.41 Aligned_cols=88 Identities=43% Similarity=0.672 Sum_probs=79.7
Q ss_pred CcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCeEEEcCCCCchhHHhHHHHHHHHHhhcCCCCCCCCCCCcEE
Q psy7268 40 TFEDTGLAPEIIDIFTKRGLTTPTEIQKYSIPTLLSGKSAILVAETGCGKTLSFLAPLVQQILTWKSRPEYKPELNAPLA 119 (134)
Q Consensus 40 ~f~~~~l~~~i~~~l~~~g~~~~t~iQ~~~i~~~~~g~dvli~a~tGsGKT~~~~lpil~~~~~~~~~~~~~~~~~~~~~ 119 (134)
+|++++|++.+++++.+.||..|+++|.++++.+++|+|+++++|||+|||++|++|+++.+.... ....++++
T Consensus 2 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~------~~~~~~~~ 75 (207)
T 2gxq_A 2 EFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQ------ERGRKPRA 75 (207)
T ss_dssp CGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCC------CTTCCCSE
T ss_pred ChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhcc------ccCCCCcE
Confidence 699999999999999999999999999999999999999999999999999999999999886421 11256789
Q ss_pred EEEcCcHHHHHHhc
Q psy7268 120 LIITPGRELVFQIG 133 (134)
Q Consensus 120 lil~Pt~~La~Qi~ 133 (134)
+|++|+++|+.|++
T Consensus 76 lil~P~~~L~~q~~ 89 (207)
T 2gxq_A 76 LVLTPTRELALQVA 89 (207)
T ss_dssp EEECSSHHHHHHHH
T ss_pred EEEECCHHHHHHHH
Confidence 99999999999985
No 17
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.85 E-value=1.8e-21 Score=144.07 Aligned_cols=89 Identities=36% Similarity=0.505 Sum_probs=76.0
Q ss_pred CcccCC--CCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCeEEEcCCCCchhHHhHHHHHHHHHhhcCCCCCCCCCCCc
Q psy7268 40 TFEDTG--LAPEIIDIFTKRGLTTPTEIQKYSIPTLLSGKSAILVAETGCGKTLSFLAPLVQQILTWKSRPEYKPELNAP 117 (134)
Q Consensus 40 ~f~~~~--l~~~i~~~l~~~g~~~~t~iQ~~~i~~~~~g~dvli~a~tGsGKT~~~~lpil~~~~~~~~~~~~~~~~~~~ 117 (134)
+|++++ +++.+++.+.+.||+.|+++|.++++.++.|+|+++++|||+|||++|++|+++.+..... ....+.
T Consensus 53 ~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~-----~~~~~~ 127 (262)
T 3ly5_A 53 SFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRF-----MPRNGT 127 (262)
T ss_dssp CC-----CCCHHHHHHHHHTTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTC-----CGGGCC
T ss_pred ChhHhccccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhccc-----cccCCc
Confidence 466666 9999999999999999999999999999999999999999999999999999999876321 112467
Q ss_pred EEEEEcCcHHHHHHhc
Q psy7268 118 LALIITPGRELVFQIG 133 (134)
Q Consensus 118 ~~lil~Pt~~La~Qi~ 133 (134)
++||++||++|+.|++
T Consensus 128 ~~lil~Pt~~La~q~~ 143 (262)
T 3ly5_A 128 GVLILSPTRELAMQTF 143 (262)
T ss_dssp CEEEECSSHHHHHHHH
T ss_pred eEEEEeCCHHHHHHHH
Confidence 8999999999999985
No 18
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=99.85 E-value=3.2e-21 Score=149.18 Aligned_cols=90 Identities=29% Similarity=0.451 Sum_probs=81.7
Q ss_pred CCCCCCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCeEEEcCCCCchhHHhHHHHHHHHHhhcCCCCCCCCC
Q psy7268 35 RIDLGTFEDTGLAPEIIDIFTKRGLTTPTEIQKYSIPTLLSGKSAILVAETGCGKTLSFLAPLVQQILTWKSRPEYKPEL 114 (134)
Q Consensus 35 ~~~~~~f~~~~l~~~i~~~l~~~g~~~~t~iQ~~~i~~~~~g~dvli~a~tGsGKT~~~~lpil~~~~~~~~~~~~~~~~ 114 (134)
..+..+|++++|++.++++|.+.||..|+++|.++++.+++|+|+++++|||+|||++|++|+++.+... .
T Consensus 33 ~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~---------~ 103 (410)
T 2j0s_A 33 VDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQ---------V 103 (410)
T ss_dssp CCCCCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTT---------S
T ss_pred ccCCCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhc---------c
Confidence 3556789999999999999999999999999999999999999999999999999999999999877432 1
Q ss_pred CCcEEEEEcCcHHHHHHhc
Q psy7268 115 NAPLALIITPGRELVFQIG 133 (134)
Q Consensus 115 ~~~~~lil~Pt~~La~Qi~ 133 (134)
.+.++||++|+++|+.|++
T Consensus 104 ~~~~~lil~Pt~~L~~q~~ 122 (410)
T 2j0s_A 104 RETQALILAPTRELAVQIQ 122 (410)
T ss_dssp CSCCEEEECSSHHHHHHHH
T ss_pred CCceEEEEcCcHHHHHHHH
Confidence 5678999999999999985
No 19
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.84 E-value=1.1e-20 Score=145.56 Aligned_cols=90 Identities=27% Similarity=0.513 Sum_probs=81.9
Q ss_pred CCCCCCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcC--CCeEEEcCCCCchhHHhHHHHHHHHHhhcCCCCCCC
Q psy7268 35 RIDLGTFEDTGLAPEIIDIFTKRGLTTPTEIQKYSIPTLLSG--KSAILVAETGCGKTLSFLAPLVQQILTWKSRPEYKP 112 (134)
Q Consensus 35 ~~~~~~f~~~~l~~~i~~~l~~~g~~~~t~iQ~~~i~~~~~g--~dvli~a~tGsGKT~~~~lpil~~~~~~~~~~~~~~ 112 (134)
..++.+|+++++++.++++|.+.||..|+++|.++++.+++| +|+++++|||+|||++|++|+++.+....
T Consensus 21 ~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~------- 93 (412)
T 3fht_A 21 LYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPAN------- 93 (412)
T ss_dssp TCCSSCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTS-------
T ss_pred ccccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhcC-------
Confidence 456789999999999999999999999999999999999987 89999999999999999999999875422
Q ss_pred CCCCcEEEEEcCcHHHHHHhc
Q psy7268 113 ELNAPLALIITPGRELVFQIG 133 (134)
Q Consensus 113 ~~~~~~~lil~Pt~~La~Qi~ 133 (134)
.++++||++|+++|+.|++
T Consensus 94 --~~~~~lil~P~~~L~~q~~ 112 (412)
T 3fht_A 94 --KYPQCLCLSPTYELALQTG 112 (412)
T ss_dssp --CSCCEEEECSSHHHHHHHH
T ss_pred --CCCCEEEECCCHHHHHHHH
Confidence 5668999999999999974
No 20
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.83 E-value=8.2e-21 Score=150.31 Aligned_cols=89 Identities=27% Similarity=0.527 Sum_probs=80.7
Q ss_pred CCCCCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcC--CCeEEEcCCCCchhHHhHHHHHHHHHhhcCCCCCCCC
Q psy7268 36 IDLGTFEDTGLAPEIIDIFTKRGLTTPTEIQKYSIPTLLSG--KSAILVAETGCGKTLSFLAPLVQQILTWKSRPEYKPE 113 (134)
Q Consensus 36 ~~~~~f~~~~l~~~i~~~l~~~g~~~~t~iQ~~~i~~~~~g--~dvli~a~tGsGKT~~~~lpil~~~~~~~~~~~~~~~ 113 (134)
.++.+|++++|++.++++|.++||..|+++|.++|+.+++| +|+++++|||+|||++|++|++..+....
T Consensus 89 ~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~-------- 160 (479)
T 3fmp_B 89 YSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPAN-------- 160 (479)
T ss_dssp CCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTTS--------
T ss_pred cCcCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhcC--------
Confidence 34678999999999999999999999999999999999987 89999999999999999999998875322
Q ss_pred CCCcEEEEEcCcHHHHHHhc
Q psy7268 114 LNAPLALIITPGRELVFQIG 133 (134)
Q Consensus 114 ~~~~~~lil~Pt~~La~Qi~ 133 (134)
.++++||++|+++|+.|++
T Consensus 161 -~~~~~lil~Pt~~La~Q~~ 179 (479)
T 3fmp_B 161 -KYPQCLCLSPTYELALQTG 179 (479)
T ss_dssp -CSCCEEEECSSHHHHHHHH
T ss_pred -CCCcEEEEeChHHHHHHHH
Confidence 4668999999999999984
No 21
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.83 E-value=2.8e-20 Score=142.25 Aligned_cols=87 Identities=29% Similarity=0.504 Sum_probs=80.0
Q ss_pred CCCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcC--CCeEEEcCCCCchhHHhHHHHHHHHHhhcCCCCCCCCCC
Q psy7268 38 LGTFEDTGLAPEIIDIFTKRGLTTPTEIQKYSIPTLLSG--KSAILVAETGCGKTLSFLAPLVQQILTWKSRPEYKPELN 115 (134)
Q Consensus 38 ~~~f~~~~l~~~i~~~l~~~g~~~~t~iQ~~~i~~~~~g--~dvli~a~tGsGKT~~~~lpil~~~~~~~~~~~~~~~~~ 115 (134)
..+|++++|++.++++|.+.||..|+++|.++++.++.| +++++++|||+|||++|++|++..+.... .
T Consensus 4 ~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~---------~ 74 (395)
T 3pey_A 4 AKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPED---------A 74 (395)
T ss_dssp CCSSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTC---------C
T ss_pred ccCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccCC---------C
Confidence 478999999999999999999999999999999999988 89999999999999999999999875422 5
Q ss_pred CcEEEEEcCcHHHHHHhc
Q psy7268 116 APLALIITPGRELVFQIG 133 (134)
Q Consensus 116 ~~~~lil~Pt~~La~Qi~ 133 (134)
+.++||++|+++|+.|++
T Consensus 75 ~~~~lil~P~~~L~~q~~ 92 (395)
T 3pey_A 75 SPQAICLAPSRELARQTL 92 (395)
T ss_dssp SCCEEEECSSHHHHHHHH
T ss_pred CccEEEECCCHHHHHHHH
Confidence 678999999999999975
No 22
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.82 E-value=4.1e-20 Score=142.40 Aligned_cols=89 Identities=33% Similarity=0.491 Sum_probs=79.4
Q ss_pred CCCCCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCeEEEcCCCCchhHHhHHHHHHHHHhhcCCCCCCCCCC
Q psy7268 36 IDLGTFEDTGLAPEIIDIFTKRGLTTPTEIQKYSIPTLLSGKSAILVAETGCGKTLSFLAPLVQQILTWKSRPEYKPELN 115 (134)
Q Consensus 36 ~~~~~f~~~~l~~~i~~~l~~~g~~~~t~iQ~~~i~~~~~g~dvli~a~tGsGKT~~~~lpil~~~~~~~~~~~~~~~~~ 115 (134)
....+|++++|++.++++|.+.||+.|+++|.++++.+++|+|+++++|||+|||++|++|++..+.... .
T Consensus 18 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~~---------~ 88 (400)
T 1s2m_A 18 TKGNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKL---------N 88 (400)
T ss_dssp ---CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTTS---------C
T ss_pred cccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhcc---------C
Confidence 3456899999999999999999999999999999999999999999999999999999999998874321 4
Q ss_pred CcEEEEEcCcHHHHHHhc
Q psy7268 116 APLALIITPGRELVFQIG 133 (134)
Q Consensus 116 ~~~~lil~Pt~~La~Qi~ 133 (134)
+.++||++|+++|+.|++
T Consensus 89 ~~~~lil~P~~~L~~q~~ 106 (400)
T 1s2m_A 89 KIQALIMVPTRELALQTS 106 (400)
T ss_dssp SCCEEEECSSHHHHHHHH
T ss_pred CccEEEEcCCHHHHHHHH
Confidence 668999999999999975
No 23
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.81 E-value=3.5e-20 Score=142.02 Aligned_cols=90 Identities=31% Similarity=0.452 Sum_probs=82.0
Q ss_pred CCCCCCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCeEEEcCCCCchhHHhHHHHHHHHHhhcCCCCCCCCC
Q psy7268 35 RIDLGTFEDTGLAPEIIDIFTKRGLTTPTEIQKYSIPTLLSGKSAILVAETGCGKTLSFLAPLVQQILTWKSRPEYKPEL 114 (134)
Q Consensus 35 ~~~~~~f~~~~l~~~i~~~l~~~g~~~~t~iQ~~~i~~~~~g~dvli~a~tGsGKT~~~~lpil~~~~~~~~~~~~~~~~ 114 (134)
..+..+|++++|++.+++++.+.||..|+++|.++++.+++|+|+++++|||+|||++|++|++..+....
T Consensus 17 ~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~--------- 87 (394)
T 1fuu_A 17 DKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSV--------- 87 (394)
T ss_dssp CCCCCSSGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTTC---------
T ss_pred ccccCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhccC---------
Confidence 35567899999999999999999999999999999999999999999999999999999999999875422
Q ss_pred CCcEEEEEcCcHHHHHHhc
Q psy7268 115 NAPLALIITPGRELVFQIG 133 (134)
Q Consensus 115 ~~~~~lil~Pt~~La~Qi~ 133 (134)
.++++||++|+++|+.|++
T Consensus 88 ~~~~~lil~P~~~L~~q~~ 106 (394)
T 1fuu_A 88 KAPQALMLAPTRELALQIQ 106 (394)
T ss_dssp CSCCEEEECSSHHHHHHHH
T ss_pred CCCCEEEEcCCHHHHHHHH
Confidence 5678999999999999975
No 24
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.81 E-value=1.1e-19 Score=140.31 Aligned_cols=90 Identities=31% Similarity=0.437 Sum_probs=82.2
Q ss_pred CCCCCCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCeEEEcCCCCchhHHhHHHHHHHHHhhcCCCCCCCCC
Q psy7268 35 RIDLGTFEDTGLAPEIIDIFTKRGLTTPTEIQKYSIPTLLSGKSAILVAETGCGKTLSFLAPLVQQILTWKSRPEYKPEL 114 (134)
Q Consensus 35 ~~~~~~f~~~~l~~~i~~~l~~~g~~~~t~iQ~~~i~~~~~g~dvli~a~tGsGKT~~~~lpil~~~~~~~~~~~~~~~~ 114 (134)
.....+|+++++++.+++.+.+.||..|+++|.++++.+++|+|+++++|||+|||++|++|+++.+....
T Consensus 36 ~~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~--------- 106 (414)
T 3eiq_A 36 NEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDL--------- 106 (414)
T ss_dssp CCCCCCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTTS---------
T ss_pred cchhcCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhcC---------
Confidence 45667899999999999999999999999999999999999999999999999999999999999875422
Q ss_pred CCcEEEEEcCcHHHHHHhc
Q psy7268 115 NAPLALIITPGRELVFQIG 133 (134)
Q Consensus 115 ~~~~~lil~Pt~~La~Qi~ 133 (134)
.+.++||++|+++|+.|++
T Consensus 107 ~~~~~lil~P~~~L~~q~~ 125 (414)
T 3eiq_A 107 KATQALVLAPTRELAQQIQ 125 (414)
T ss_dssp CSCCEEEECSSHHHHHHHH
T ss_pred CceeEEEEeChHHHHHHHH
Confidence 4678999999999999975
No 25
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.81 E-value=6e-20 Score=140.74 Aligned_cols=86 Identities=31% Similarity=0.487 Sum_probs=78.2
Q ss_pred CCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCeEEEcCCCCchhHHhHHHHHHHHHhhcCCCCCCCCCCCcE
Q psy7268 39 GTFEDTGLAPEIIDIFTKRGLTTPTEIQKYSIPTLLSGKSAILVAETGCGKTLSFLAPLVQQILTWKSRPEYKPELNAPL 118 (134)
Q Consensus 39 ~~f~~~~l~~~i~~~l~~~g~~~~t~iQ~~~i~~~~~g~dvli~a~tGsGKT~~~~lpil~~~~~~~~~~~~~~~~~~~~ 118 (134)
.+|++++|++.++++|.+.||..|+++|.++++.++.|+|+++.+|||+|||++|++|++..+... ..+.+
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~---------~~~~~ 78 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPV---------TGQVS 78 (391)
T ss_dssp -CGGGGCCCHHHHHHHHHHSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCC---------TTCCC
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhccc---------CCCee
Confidence 479999999999999999999999999999999999999999999999999999999999887432 14678
Q ss_pred EEEEcCcHHHHHHhc
Q psy7268 119 ALIITPGRELVFQIG 133 (134)
Q Consensus 119 ~lil~Pt~~La~Qi~ 133 (134)
+||++|+++|+.|++
T Consensus 79 ~lil~P~~~L~~q~~ 93 (391)
T 1xti_A 79 VLVMCHTRELAFQIS 93 (391)
T ss_dssp EEEECSCHHHHHHHH
T ss_pred EEEECCCHHHHHHHH
Confidence 999999999999975
No 26
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.79 E-value=1.8e-19 Score=146.06 Aligned_cols=83 Identities=33% Similarity=0.470 Sum_probs=74.8
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHHHHHHH--cCCCeEEEcCCCCchhHHhHHHHHHHHHhhcCCCCCCCCCCCcEEEEEc
Q psy7268 46 LAPEIIDIFTKRGLTTPTEIQKYSIPTLL--SGKSAILVAETGCGKTLSFLAPLVQQILTWKSRPEYKPELNAPLALIIT 123 (134)
Q Consensus 46 l~~~i~~~l~~~g~~~~t~iQ~~~i~~~~--~g~dvli~a~tGsGKT~~~~lpil~~~~~~~~~~~~~~~~~~~~~lil~ 123 (134)
|++++++++.++||..|+++|.++|+.++ .|+|+++++|||+|||++|++|+++.+..... ....++++||++
T Consensus 28 l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~-----~~~~~~~~lvl~ 102 (579)
T 3sqw_A 28 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKF-----DSQYMVKAVIVA 102 (579)
T ss_dssp SCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTT-----SSTTSCCEEEEC
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccc-----cccCCCeEEEEc
Confidence 99999999999999999999999999999 78899999999999999999999999986432 112467899999
Q ss_pred CcHHHHHHhc
Q psy7268 124 PGRELVFQIG 133 (134)
Q Consensus 124 Pt~~La~Qi~ 133 (134)
||++|+.|++
T Consensus 103 Ptr~La~Q~~ 112 (579)
T 3sqw_A 103 PTRDLALQIE 112 (579)
T ss_dssp SSHHHHHHHH
T ss_pred chHHHHHHHH
Confidence 9999999985
No 27
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.79 E-value=2.1e-19 Score=144.62 Aligned_cols=83 Identities=33% Similarity=0.470 Sum_probs=74.6
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHHHHHHH--cCCCeEEEcCCCCchhHHhHHHHHHHHHhhcCCCCCCCCCCCcEEEEEc
Q psy7268 46 LAPEIIDIFTKRGLTTPTEIQKYSIPTLL--SGKSAILVAETGCGKTLSFLAPLVQQILTWKSRPEYKPELNAPLALIIT 123 (134)
Q Consensus 46 l~~~i~~~l~~~g~~~~t~iQ~~~i~~~~--~g~dvli~a~tGsGKT~~~~lpil~~~~~~~~~~~~~~~~~~~~~lil~ 123 (134)
|++.+++++.+.||..|+++|.++|+.++ .|+|+++++|||+|||++|++|+++.+..... ....++++||++
T Consensus 79 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~-----~~~~~~~~lil~ 153 (563)
T 3i5x_A 79 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKF-----DSQYMVKAVIVA 153 (563)
T ss_dssp SCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTT-----SSTTSCCEEEEC
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccc-----cccCCeeEEEEc
Confidence 99999999999999999999999999999 67899999999999999999999999986432 112457899999
Q ss_pred CcHHHHHHhc
Q psy7268 124 PGRELVFQIG 133 (134)
Q Consensus 124 Pt~~La~Qi~ 133 (134)
||++|+.|++
T Consensus 154 Ptr~La~Q~~ 163 (563)
T 3i5x_A 154 PTRDLALQIE 163 (563)
T ss_dssp SSHHHHHHHH
T ss_pred CcHHHHHHHH
Confidence 9999999985
No 28
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.78 E-value=4e-19 Score=134.61 Aligned_cols=86 Identities=35% Similarity=0.562 Sum_probs=78.3
Q ss_pred CCCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcC-CCeEEEcCCCCchhHHhHHHHHHHHHhhcCCCCCCCCCCC
Q psy7268 38 LGTFEDTGLAPEIIDIFTKRGLTTPTEIQKYSIPTLLSG-KSAILVAETGCGKTLSFLAPLVQQILTWKSRPEYKPELNA 116 (134)
Q Consensus 38 ~~~f~~~~l~~~i~~~l~~~g~~~~t~iQ~~~i~~~~~g-~dvli~a~tGsGKT~~~~lpil~~~~~~~~~~~~~~~~~~ 116 (134)
..+|++++|++.++++|.+.||..|+++|.++++.+++| +++++.+|||+|||++|++|++..+... .+
T Consensus 5 ~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~----------~~ 74 (367)
T 1hv8_A 5 YMNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNEN----------NG 74 (367)
T ss_dssp CCCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSS----------SS
T ss_pred cCchhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhccc----------CC
Confidence 457999999999999999999999999999999999988 6999999999999999999998876431 46
Q ss_pred cEEEEEcCcHHHHHHhc
Q psy7268 117 PLALIITPGRELVFQIG 133 (134)
Q Consensus 117 ~~~lil~Pt~~La~Qi~ 133 (134)
.++||++|+++|+.|++
T Consensus 75 ~~~lil~P~~~L~~q~~ 91 (367)
T 1hv8_A 75 IEAIILTPTRELAIQVA 91 (367)
T ss_dssp CCEEEECSCHHHHHHHH
T ss_pred CcEEEEcCCHHHHHHHH
Confidence 78999999999999975
No 29
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.72 E-value=1.7e-17 Score=124.45 Aligned_cols=73 Identities=33% Similarity=0.570 Sum_probs=67.8
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCeEEEcCCCCchhHHhHHHHHHHHHhhcCCCCCCCCCCCcEEEEEcCc
Q psy7268 46 LAPEIIDIFTKRGLTTPTEIQKYSIPTLLSGKSAILVAETGCGKTLSFLAPLVQQILTWKSRPEYKPELNAPLALIITPG 125 (134)
Q Consensus 46 l~~~i~~~l~~~g~~~~t~iQ~~~i~~~~~g~dvli~a~tGsGKT~~~~lpil~~~~~~~~~~~~~~~~~~~~~lil~Pt 125 (134)
|++++.++|.++||..|+++|.++++.+++|+++++.+|||+|||++|++|++.. +.++||++|+
T Consensus 1 l~~~i~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~---------------~~~~liv~P~ 65 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL---------------GMKSLVVTPT 65 (337)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH---------------TCCEEEECSS
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh---------------cCCEEEEeCC
Confidence 5789999999999999999999999999999999999999999999999998763 3569999999
Q ss_pred HHHHHHhc
Q psy7268 126 RELVFQIG 133 (134)
Q Consensus 126 ~~La~Qi~ 133 (134)
++|+.|++
T Consensus 66 ~~L~~q~~ 73 (337)
T 2z0m_A 66 RELTRQVA 73 (337)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999975
No 30
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.71 E-value=2.7e-17 Score=136.00 Aligned_cols=84 Identities=31% Similarity=0.413 Sum_probs=78.1
Q ss_pred CCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHH-HHcCCCeEEEcCCCCchhHHhHHHHHHHHHhhcCCCCCCCCCCCc
Q psy7268 39 GTFEDTGLAPEIIDIFTKRGLTTPTEIQKYSIPT-LLSGKSAILVAETGCGKTLSFLAPLVQQILTWKSRPEYKPELNAP 117 (134)
Q Consensus 39 ~~f~~~~l~~~i~~~l~~~g~~~~t~iQ~~~i~~-~~~g~dvli~a~tGsGKT~~~~lpil~~~~~~~~~~~~~~~~~~~ 117 (134)
-+|++++|++.+.+++.+.||..|+++|.++++. +..|+++++++|||+|||++|.+++++.+.. .+.
T Consensus 8 ~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~-----------~~~ 76 (715)
T 2va8_A 8 MPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLK-----------NGG 76 (715)
T ss_dssp CBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHH-----------SCS
T ss_pred CcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHH-----------CCC
Confidence 4799999999999999999999999999999999 7889999999999999999999999998864 356
Q ss_pred EEEEEcCcHHHHHHhc
Q psy7268 118 LALIITPGRELVFQIG 133 (134)
Q Consensus 118 ~~lil~Pt~~La~Qi~ 133 (134)
+++|++|+++|+.|++
T Consensus 77 ~il~i~P~r~La~q~~ 92 (715)
T 2va8_A 77 KAIYVTPLRALTNEKY 92 (715)
T ss_dssp EEEEECSCHHHHHHHH
T ss_pred eEEEEeCcHHHHHHHH
Confidence 8999999999999975
No 31
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.71 E-value=1.4e-17 Score=137.96 Aligned_cols=83 Identities=25% Similarity=0.326 Sum_probs=77.6
Q ss_pred CcccCCCCHHHHHHHHHCCCCCChHHHHHHHHH-HHcCCCeEEEcCCCCchhHHhHHHHHHHHHhhcCCCCCCCCCCCcE
Q psy7268 40 TFEDTGLAPEIIDIFTKRGLTTPTEIQKYSIPT-LLSGKSAILVAETGCGKTLSFLAPLVQQILTWKSRPEYKPELNAPL 118 (134)
Q Consensus 40 ~f~~~~l~~~i~~~l~~~g~~~~t~iQ~~~i~~-~~~g~dvli~a~tGsGKT~~~~lpil~~~~~~~~~~~~~~~~~~~~ 118 (134)
+|++++|++.+.+.+.+.||..|+++|.++++. +..|+++++++|||+|||++|.+++++.+.. .+.+
T Consensus 2 ~f~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~-----------~~~~ 70 (720)
T 2zj8_A 2 RVDELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILT-----------QGGK 70 (720)
T ss_dssp BGGGCCSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHH-----------HCSE
T ss_pred cHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHh-----------CCCE
Confidence 589999999999999999999999999999998 8899999999999999999999999998874 3568
Q ss_pred EEEEcCcHHHHHHhc
Q psy7268 119 ALIITPGRELVFQIG 133 (134)
Q Consensus 119 ~lil~Pt~~La~Qi~ 133 (134)
++|++|+++|+.|++
T Consensus 71 ~l~i~P~raLa~q~~ 85 (720)
T 2zj8_A 71 AVYIVPLKALAEEKF 85 (720)
T ss_dssp EEEECSSGGGHHHHH
T ss_pred EEEEcCcHHHHHHHH
Confidence 999999999999985
No 32
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.70 E-value=1.9e-17 Score=133.24 Aligned_cols=81 Identities=23% Similarity=0.309 Sum_probs=74.2
Q ss_pred CCCcccCCCCHHHHHHHHH-CCCCCChHHHHHHHHHHHcCCCeEEEcCCCCchhHHhHHHHHHHHHhhcCCCCCCCCCCC
Q psy7268 38 LGTFEDTGLAPEIIDIFTK-RGLTTPTEIQKYSIPTLLSGKSAILVAETGCGKTLSFLAPLVQQILTWKSRPEYKPELNA 116 (134)
Q Consensus 38 ~~~f~~~~l~~~i~~~l~~-~g~~~~t~iQ~~~i~~~~~g~dvli~a~tGsGKT~~~~lpil~~~~~~~~~~~~~~~~~~ 116 (134)
+.+|++++|++.+.+.|++ .||..|+++|.++|+.+++|+|+++.+|||+|||++|++|++.. .
T Consensus 1 ~~~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~---------------~ 65 (523)
T 1oyw_A 1 MAQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL---------------N 65 (523)
T ss_dssp CCCCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS---------------S
T ss_pred CCChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHh---------------C
Confidence 4689999999999999999 79999999999999999999999999999999999999998742 2
Q ss_pred cEEEEEcCcHHHHHHhc
Q psy7268 117 PLALIITPGRELVFQIG 133 (134)
Q Consensus 117 ~~~lil~Pt~~La~Qi~ 133 (134)
.++||++|+++|+.|..
T Consensus 66 g~~lvi~P~~aL~~q~~ 82 (523)
T 1oyw_A 66 GLTVVVSPLISLMKDQV 82 (523)
T ss_dssp SEEEEECSCHHHHHHHH
T ss_pred CCEEEECChHHHHHHHH
Confidence 46899999999999864
No 33
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.67 E-value=1e-16 Score=130.84 Aligned_cols=78 Identities=27% Similarity=0.319 Sum_probs=71.0
Q ss_pred cccCCCCHHHHHHHHH-CCCCCChHHHHHHHHHHHcCCCeEEEcCCCCchhHHhHHHHHHHHHhhcCCCCCCCCCCCcEE
Q psy7268 41 FEDTGLAPEIIDIFTK-RGLTTPTEIQKYSIPTLLSGKSAILVAETGCGKTLSFLAPLVQQILTWKSRPEYKPELNAPLA 119 (134)
Q Consensus 41 f~~~~l~~~i~~~l~~-~g~~~~t~iQ~~~i~~~~~g~dvli~a~tGsGKT~~~~lpil~~~~~~~~~~~~~~~~~~~~~ 119 (134)
++++++++.+.+.|++ .||..|+|+|.++|+.+++|+|+++.+|||+|||++|++|++. ...++
T Consensus 23 ~~~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~---------------~~g~~ 87 (591)
T 2v1x_A 23 KEDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALC---------------SDGFT 87 (591)
T ss_dssp CSCSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHT---------------SSSEE
T ss_pred cccCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHH---------------cCCcE
Confidence 3468899999999999 5999999999999999999999999999999999999999975 23479
Q ss_pred EEEcCcHHHHHHhc
Q psy7268 120 LIITPGRELVFQIG 133 (134)
Q Consensus 120 lil~Pt~~La~Qi~ 133 (134)
|||+|+++|+.|..
T Consensus 88 lVisP~~~L~~q~~ 101 (591)
T 2v1x_A 88 LVICPLISLMEDQL 101 (591)
T ss_dssp EEECSCHHHHHHHH
T ss_pred EEEeCHHHHHHHHH
Confidence 99999999999864
No 34
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.66 E-value=1.4e-17 Score=137.66 Aligned_cols=82 Identities=22% Similarity=0.305 Sum_probs=73.4
Q ss_pred CcccCC--CCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCeEEEcCCCCchhHHhHHHHHHHHHhhcCCCCCCCCCCCc
Q psy7268 40 TFEDTG--LAPEIIDIFTKRGLTTPTEIQKYSIPTLLSGKSAILVAETGCGKTLSFLAPLVQQILTWKSRPEYKPELNAP 117 (134)
Q Consensus 40 ~f~~~~--l~~~i~~~l~~~g~~~~t~iQ~~~i~~~~~g~dvli~a~tGsGKT~~~~lpil~~~~~~~~~~~~~~~~~~~ 117 (134)
+|++++ |++.+.+++.+.||+.|+++|.++++.++.|+++++++|||+|||++|.++++..+. ++.
T Consensus 2 ~f~~l~~~l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~------------~~~ 69 (702)
T 2p6r_A 2 KVEELAESISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAI------------KGG 69 (702)
T ss_dssp CSHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHH------------TTC
T ss_pred chhhhhhccCHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHH------------hCC
Confidence 588888 999999999999999999999999999999999999999999999999999999875 246
Q ss_pred EEEEEcCcHHHHHHhc
Q psy7268 118 LALIITPGRELVFQIG 133 (134)
Q Consensus 118 ~~lil~Pt~~La~Qi~ 133 (134)
+++|++|+++|+.|++
T Consensus 70 ~~l~i~P~r~La~q~~ 85 (702)
T 2p6r_A 70 KSLYVVPLRALAGEKY 85 (702)
T ss_dssp CEEEEESSHHHHHHHH
T ss_pred cEEEEeCcHHHHHHHH
Confidence 8999999999999975
No 35
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.64 E-value=2.9e-17 Score=131.52 Aligned_cols=88 Identities=23% Similarity=0.246 Sum_probs=60.0
Q ss_pred CCCCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcC--CCeEEEcCCCCchhHHhHHHHHHHHHhhcCCCCCCCCC
Q psy7268 37 DLGTFEDTGLAPEIIDIFTKRGLTTPTEIQKYSIPTLLSG--KSAILVAETGCGKTLSFLAPLVQQILTWKSRPEYKPEL 114 (134)
Q Consensus 37 ~~~~f~~~~l~~~i~~~l~~~g~~~~t~iQ~~~i~~~~~g--~dvli~a~tGsGKT~~~~lpil~~~~~~~~~~~~~~~~ 114 (134)
.+..|...++++.+++.+.+.||..|+++|.++++.+++| +++++++|||+|||++|+++++..+....
T Consensus 117 ~l~~~~~~~l~~~~~~~l~~~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~~--------- 187 (508)
T 3fho_A 117 XXXXXXXXXXXXXXXXXXXXXXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASV--------- 187 (508)
T ss_dssp ----------------------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTTC---------
T ss_pred ccccccccccccccccccccccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhCC---------
Confidence 3455677889999999999999999999999999999998 99999999999999999999999875422
Q ss_pred CCcEEEEEcCcHHHHHHhc
Q psy7268 115 NAPLALIITPGRELVFQIG 133 (134)
Q Consensus 115 ~~~~~lil~Pt~~La~Qi~ 133 (134)
.+.++||++|+++|+.|++
T Consensus 188 ~~~~vLvl~P~~~L~~Q~~ 206 (508)
T 3fho_A 188 PKPQAICLAPSRELARQIM 206 (508)
T ss_dssp CSCCEEEECSCHHHHHHHH
T ss_pred CCceEEEEECcHHHHHHHH
Confidence 4678999999999999975
No 36
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.64 E-value=2.4e-16 Score=122.34 Aligned_cols=73 Identities=26% Similarity=0.235 Sum_probs=64.3
Q ss_pred HHHHHHHHH-CCCCCChHHHHHHHHHHHcCCCeEEEcCCCCchhHHhHHHHHHHHHhhcCCCCCCCCCCCcEEEEEcCcH
Q psy7268 48 PEIIDIFTK-RGLTTPTEIQKYSIPTLLSGKSAILVAETGCGKTLSFLAPLVQQILTWKSRPEYKPELNAPLALIITPGR 126 (134)
Q Consensus 48 ~~i~~~l~~-~g~~~~t~iQ~~~i~~~~~g~dvli~a~tGsGKT~~~~lpil~~~~~~~~~~~~~~~~~~~~~lil~Pt~ 126 (134)
+++.+.+++ .|| .|+++|.++++.+++|+|+++++|||+|||++|+++++.... .++++||++||+
T Consensus 8 ~~~~~~l~~~~~~-~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~~------------~~~~~lil~Pt~ 74 (414)
T 3oiy_A 8 EDFRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLAR------------KGKKSALVFPTV 74 (414)
T ss_dssp HHHHHHHHHHHSS-CCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHHT------------TTCCEEEEESSH
T ss_pred HHHHHHHHHhcCC-CCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHhc------------CCCEEEEEECCH
Confidence 456666766 477 899999999999999999999999999999999999888762 567899999999
Q ss_pred HHHHHhc
Q psy7268 127 ELVFQIG 133 (134)
Q Consensus 127 ~La~Qi~ 133 (134)
+|+.|++
T Consensus 75 ~L~~q~~ 81 (414)
T 3oiy_A 75 TLVKQTL 81 (414)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999986
No 37
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.56 E-value=1.7e-15 Score=130.97 Aligned_cols=83 Identities=20% Similarity=0.142 Sum_probs=74.2
Q ss_pred CCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCeEEEcCCCCchhHHhHHHHHHHHHhhcCCCCCCCCCCCcE
Q psy7268 39 GTFEDTGLAPEIIDIFTKRGLTTPTEIQKYSIPTLLSGKSAILVAETGCGKTLSFLAPLVQQILTWKSRPEYKPELNAPL 118 (134)
Q Consensus 39 ~~f~~~~l~~~i~~~l~~~g~~~~t~iQ~~~i~~~~~g~dvli~a~tGsGKT~~~~lpil~~~~~~~~~~~~~~~~~~~~ 118 (134)
..|+.+++++.+...+.+.++-.|+++|.++|+.+.+|+|+++++|||+|||++|.+|++..+. .+.+
T Consensus 162 ~~~~~~~l~~~~~~~~~~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~------------~g~r 229 (1108)
T 3l9o_A 162 PNYDYTPIAEHKRVNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLK------------NKQR 229 (1108)
T ss_dssp SCCCSSTTTTTCCCSCSSCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHH------------TTCE
T ss_pred CCcccCCCChhhhHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHh------------cCCe
Confidence 4677788888887777776666899999999999999999999999999999999999999884 4678
Q ss_pred EEEEcCcHHHHHHhc
Q psy7268 119 ALIITPGRELVFQIG 133 (134)
Q Consensus 119 ~lil~Pt~~La~Qi~ 133 (134)
++|++|+++|+.|++
T Consensus 230 vlvl~PtraLa~Q~~ 244 (1108)
T 3l9o_A 230 VIYTSPIKALSNQKY 244 (1108)
T ss_dssp EEEEESSHHHHHHHH
T ss_pred EEEEcCcHHHHHHHH
Confidence 999999999999986
No 38
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.56 E-value=6e-15 Score=121.12 Aligned_cols=76 Identities=18% Similarity=0.152 Sum_probs=62.1
Q ss_pred HHHHHHCCCCCChHHHHHHHHHHHcCCCeEEEcCCCCchhHHhHHHHHHHHHhhcCCCCCCCCCCCcEEEEEcCcHHHHH
Q psy7268 51 IDIFTKRGLTTPTEIQKYSIPTLLSGKSAILVAETGCGKTLSFLAPLVQQILTWKSRPEYKPELNAPLALIITPGRELVF 130 (134)
Q Consensus 51 ~~~l~~~g~~~~t~iQ~~~i~~~~~g~dvli~a~tGsGKT~~~~lpil~~~~~~~~~~~~~~~~~~~~~lil~Pt~~La~ 130 (134)
..++..+||..|+++|.++++.++.|+|+++++|||+|||++|++|+++.+..... ..+.++||++||++|+.
T Consensus 3 ~~~l~~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~-------~~~~~~lvl~Pt~~L~~ 75 (696)
T 2ykg_A 3 VSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQ-------GQKGKVVFFANQIPVYE 75 (696)
T ss_dssp ----CTTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCT-------TCCCCEEEECSSHHHHH
T ss_pred CCcccccCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCcc-------CCCCeEEEEECCHHHHH
Confidence 34667789999999999999999999999999999999999999999998875321 13468999999999999
Q ss_pred Hhc
Q psy7268 131 QIG 133 (134)
Q Consensus 131 Qi~ 133 (134)
|..
T Consensus 76 Q~~ 78 (696)
T 2ykg_A 76 QNK 78 (696)
T ss_dssp HHH
T ss_pred HHH
Confidence 975
No 39
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.53 E-value=6.1e-15 Score=126.95 Aligned_cols=70 Identities=29% Similarity=0.321 Sum_probs=62.0
Q ss_pred HHHHHHH-CCCCCChHHHHHHHHHHHcCCCeEEEcCCCCchhHHhHHHHHHHHHhhcCCCCCCCCCCCcEEEEEcCcHHH
Q psy7268 50 IIDIFTK-RGLTTPTEIQKYSIPTLLSGKSAILVAETGCGKTLSFLAPLVQQILTWKSRPEYKPELNAPLALIITPGREL 128 (134)
Q Consensus 50 i~~~l~~-~g~~~~t~iQ~~~i~~~~~g~dvli~a~tGsGKT~~~~lpil~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L 128 (134)
+.+.+.+ +||. | ++|.++|+.+++|+|+++++|||||||+ |.+|++..+.. .++++||++||++|
T Consensus 46 ~~~~~~~~~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~-----------~~~~~lil~PtreL 111 (1054)
T 1gku_B 46 FVEFFRKCVGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLAL-----------KGKRCYVIFPTSLL 111 (1054)
T ss_dssp HHHHHHTTTCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHT-----------TSCCEEEEESCHHH
T ss_pred HHHHHHHhcCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhh-----------cCCeEEEEeccHHH
Confidence 3455555 6998 9 9999999999999999999999999998 99999988864 46789999999999
Q ss_pred HHHhc
Q psy7268 129 VFQIG 133 (134)
Q Consensus 129 a~Qi~ 133 (134)
+.|++
T Consensus 112 a~Q~~ 116 (1054)
T 1gku_B 112 VIQAA 116 (1054)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99986
No 40
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.53 E-value=1.4e-14 Score=125.19 Aligned_cols=71 Identities=27% Similarity=0.231 Sum_probs=61.8
Q ss_pred HHHHHHH-CCCCCChHHHHHHHHHHHcCCCeEEEcCCCCchhHHhHHHHHHHHHhhcCCCCCCCCCCCcEEEEEcCcHHH
Q psy7268 50 IIDIFTK-RGLTTPTEIQKYSIPTLLSGKSAILVAETGCGKTLSFLAPLVQQILTWKSRPEYKPELNAPLALIITPGREL 128 (134)
Q Consensus 50 i~~~l~~-~g~~~~t~iQ~~~i~~~~~g~dvli~a~tGsGKT~~~~lpil~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L 128 (134)
+.+.+.+ .|| .|+++|+++++.+++|+|+++++|||+|||++|+++++..+. .+.++||++||++|
T Consensus 67 ~~~~~~~~~gf-~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~~------------~~~~~Lil~PtreL 133 (1104)
T 4ddu_A 67 FRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLAR------------KGKKSALVFPTVTL 133 (1104)
T ss_dssp HHHHHHHHSSS-CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHHT------------TTCCEEEEESSHHH
T ss_pred HHHHHHHhcCC-CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHHh------------cCCeEEEEechHHH
Confidence 3344443 689 799999999999999999999999999999999888888772 57789999999999
Q ss_pred HHHhc
Q psy7268 129 VFQIG 133 (134)
Q Consensus 129 a~Qi~ 133 (134)
|.|++
T Consensus 134 a~Q~~ 138 (1104)
T 4ddu_A 134 VKQTL 138 (1104)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99986
No 41
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.53 E-value=2.1e-14 Score=114.01 Aligned_cols=66 Identities=21% Similarity=0.211 Sum_probs=59.2
Q ss_pred CChHHHHHHHHHHHcCCCeEEEcCCCCchhHHhHHHHHHHHHhhcCCCCCCCCCCCcEEEEEcCcHHHHHHhc
Q psy7268 61 TPTEIQKYSIPTLLSGKSAILVAETGCGKTLSFLAPLVQQILTWKSRPEYKPELNAPLALIITPGRELVFQIG 133 (134)
Q Consensus 61 ~~t~iQ~~~i~~~~~g~dvli~a~tGsGKT~~~~lpil~~~~~~~~~~~~~~~~~~~~~lil~Pt~~La~Qi~ 133 (134)
.|+++|.++++.++.|+|+++++|||+|||++|++|+++.+..... ..+.++||++||++|+.|++
T Consensus 4 ~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~-------~~~~~~lil~P~~~L~~q~~ 69 (555)
T 3tbk_A 4 KPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPC-------GQKGKVVFFANQIPVYEQQA 69 (555)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCS-------SCCCCEEEECSSHHHHHHHH
T ss_pred CCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhccc-------CCCCEEEEEeCCHHHHHHHH
Confidence 7999999999999999999999999999999999999999876321 13678999999999999975
No 42
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.52 E-value=2.4e-14 Score=114.05 Aligned_cols=68 Identities=16% Similarity=0.132 Sum_probs=58.3
Q ss_pred CCCChHHHHHHHHHHHcCCCeEEEcCCCCchhHHhHHHHHHHHHhhcCCCCCCCCCCCcEEEEEcCcHHHHHHhc
Q psy7268 59 LTTPTEIQKYSIPTLLSGKSAILVAETGCGKTLSFLAPLVQQILTWKSRPEYKPELNAPLALIITPGRELVFQIG 133 (134)
Q Consensus 59 ~~~~t~iQ~~~i~~~~~g~dvli~a~tGsGKT~~~~lpil~~~~~~~~~~~~~~~~~~~~~lil~Pt~~La~Qi~ 133 (134)
.-.|+++|.++++.+++|+|+++++|||+|||++|++|+++.+..... ..+.++||++|+++|+.|++
T Consensus 5 ~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~-------~~~~~~lil~P~~~L~~q~~ 72 (556)
T 4a2p_A 5 TKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPA-------GRKAKVVFLATKVPVYEQQK 72 (556)
T ss_dssp ---CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCS-------SCCCCEEEECSSHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCcc-------cCCCeEEEEeCCHHHHHHHH
Confidence 348999999999999999999999999999999999999999875321 13678999999999999975
No 43
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.52 E-value=2.5e-14 Score=127.80 Aligned_cols=78 Identities=21% Similarity=0.216 Sum_probs=69.3
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHHHHHHHc-CCCeEEEcCCCCchhHHhHHHHHHHHHhhcCCCCCCCCCCCcEEEEEcC
Q psy7268 46 LAPEIIDIFTKRGLTTPTEIQKYSIPTLLS-GKSAILVAETGCGKTLSFLAPLVQQILTWKSRPEYKPELNAPLALIITP 124 (134)
Q Consensus 46 l~~~i~~~l~~~g~~~~t~iQ~~~i~~~~~-g~dvli~a~tGsGKT~~~~lpil~~~~~~~~~~~~~~~~~~~~~lil~P 124 (134)
|++...+++...+|+.++|+|.++++.++. ++|++++||||||||++|.+|++..+.+. .+.++||++|
T Consensus 911 L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~----------~~~kavyi~P 980 (1724)
T 4f92_B 911 LRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQS----------SEGRCVYITP 980 (1724)
T ss_dssp SCCHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHC----------TTCCEEEECS
T ss_pred ccCHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhC----------CCCEEEEEcC
Confidence 567788888888999999999999999986 56799999999999999999999999753 3567999999
Q ss_pred cHHHHHHhc
Q psy7268 125 GRELVFQIG 133 (134)
Q Consensus 125 t~~La~Qi~ 133 (134)
+|+||.|++
T Consensus 981 ~raLa~q~~ 989 (1724)
T 4f92_B 981 MEALAEQVY 989 (1724)
T ss_dssp CHHHHHHHH
T ss_pred hHHHHHHHH
Confidence 999999975
No 44
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.51 E-value=3e-14 Score=119.44 Aligned_cols=63 Identities=25% Similarity=0.263 Sum_probs=56.8
Q ss_pred HCCCCCChHHHHHHHHHHHcCCCeEEEcCCCCchhHHhHHHHHHHHHhhcCCCCCCCCCCCcEEEEEcCcHHHHHHhc
Q psy7268 56 KRGLTTPTEIQKYSIPTLLSGKSAILVAETGCGKTLSFLAPLVQQILTWKSRPEYKPELNAPLALIITPGRELVFQIG 133 (134)
Q Consensus 56 ~~g~~~~t~iQ~~~i~~~~~g~dvli~a~tGsGKT~~~~lpil~~~~~~~~~~~~~~~~~~~~~lil~Pt~~La~Qi~ 133 (134)
.+|| .|+++|..++|.++.|+ +..++||+|||++|.+|++.... .+.+++||+||++||.|++
T Consensus 79 ~lG~-~pt~VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL------------~g~~vlVltptreLA~qd~ 141 (844)
T 1tf5_A 79 VTGM-FPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNAL------------TGKGVHVVTVNEYLASRDA 141 (844)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHT------------TSSCEEEEESSHHHHHHHH
T ss_pred HcCC-CCcHHHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHH------------cCCCEEEEeCCHHHHHHHH
Confidence 4799 99999999999999999 89999999999999999985543 3567999999999999985
No 45
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.49 E-value=6e-14 Score=117.53 Aligned_cols=70 Identities=16% Similarity=0.116 Sum_probs=59.4
Q ss_pred CCCCCChHHHHHHHHHHHcCCCeEEEcCCCCchhHHhHHHHHHHHHhhcCCCCCCCCCCCcEEEEEcCcHHHHHHhc
Q psy7268 57 RGLTTPTEIQKYSIPTLLSGKSAILVAETGCGKTLSFLAPLVQQILTWKSRPEYKPELNAPLALIITPGRELVFQIG 133 (134)
Q Consensus 57 ~g~~~~t~iQ~~~i~~~~~g~dvli~a~tGsGKT~~~~lpil~~~~~~~~~~~~~~~~~~~~~lil~Pt~~La~Qi~ 133 (134)
.|+..|+++|.++++.++.|+|+++++|||+|||++|++|++..+..... ..+.++||++|+++|+.|++
T Consensus 244 ~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~-------~~~~~~Lvl~Pt~~L~~Q~~ 313 (797)
T 4a2q_A 244 YETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPA-------GRKAKVVFLATKVPVYEQQK 313 (797)
T ss_dssp ----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCS-------SCCCCEEEECSSHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhccc-------cCCCeEEEEeCCHHHHHHHH
Confidence 47889999999999999999999999999999999999999999875321 13678999999999999975
No 46
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.48 E-value=7.4e-14 Score=124.77 Aligned_cols=75 Identities=25% Similarity=0.255 Sum_probs=63.5
Q ss_pred CCCCChHHHHHHHHHHH-cCCCeEEEcCCCCchhHHhHHHHHHHHHhhcCCCCCCCCCCCcEEEEEcCcHHHHHHhc
Q psy7268 58 GLTTPTEIQKYSIPTLL-SGKSAILVAETGCGKTLSFLAPLVQQILTWKSRPEYKPELNAPLALIITPGRELVFQIG 133 (134)
Q Consensus 58 g~~~~t~iQ~~~i~~~~-~g~dvli~a~tGsGKT~~~~lpil~~~~~~~~~~~~~~~~~~~~~lil~Pt~~La~Qi~ 133 (134)
||++++++|++++|.++ .++|++++||||+|||+++.++++..+.+..... ......+.++||++|+|+||.|++
T Consensus 76 g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~-~~~~~~~~k~lyiaP~kALa~e~~ 151 (1724)
T 4f92_B 76 GFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMD-GTINVDDFKIIYIAPMRSLVQEMV 151 (1724)
T ss_dssp TCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTT-SSCCTTSCEEEEECSSHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhcccc-ccccCCCCEEEEECCHHHHHHHHH
Confidence 89999999999999987 5789999999999999999999999998643321 122235789999999999999985
No 47
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.47 E-value=8.3e-14 Score=116.80 Aligned_cols=73 Identities=15% Similarity=0.134 Sum_probs=63.7
Q ss_pred HHHHHHHHHCCCCCChHHHHHHHHHHHcC------CCeEEEcCCCCchhHHhHHHHHHHHHhhcCCCCCCCCCCCcEEEE
Q psy7268 48 PEIIDIFTKRGLTTPTEIQKYSIPTLLSG------KSAILVAETGCGKTLSFLAPLVQQILTWKSRPEYKPELNAPLALI 121 (134)
Q Consensus 48 ~~i~~~l~~~g~~~~t~iQ~~~i~~~~~g------~dvli~a~tGsGKT~~~~lpil~~~~~~~~~~~~~~~~~~~~~li 121 (134)
+.+.+.+..++| .||++|.++++.++++ .|++++++||||||++|++|++..+. .+.+++|
T Consensus 356 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~------------~g~qvlv 422 (780)
T 1gm5_A 356 KLAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYE------------AGFQTAF 422 (780)
T ss_dssp HHHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHH------------HTSCEEE
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHH------------cCCeEEE
Confidence 444555677899 9999999999998865 58999999999999999999999885 3578999
Q ss_pred EcCcHHHHHHhc
Q psy7268 122 ITPGRELVFQIG 133 (134)
Q Consensus 122 l~Pt~~La~Qi~ 133 (134)
++||++||.|++
T Consensus 423 laPtr~La~Q~~ 434 (780)
T 1gm5_A 423 MVPTSILAIQHY 434 (780)
T ss_dssp ECSCHHHHHHHH
T ss_pred EeCcHHHHHHHH
Confidence 999999999986
No 48
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.47 E-value=6.7e-14 Score=99.11 Aligned_cols=68 Identities=21% Similarity=0.099 Sum_probs=58.4
Q ss_pred CCCCChHHHHHHHHHHHcCCCeEEEcCCCCchhHHhHHHHHHHHHhhcCCCCCCCCCCCcEEEEEcCcHHHHHH
Q psy7268 58 GLTTPTEIQKYSIPTLLSGKSAILVAETGCGKTLSFLAPLVQQILTWKSRPEYKPELNAPLALIITPGRELVFQ 131 (134)
Q Consensus 58 g~~~~t~iQ~~~i~~~~~g~dvli~a~tGsGKT~~~~lpil~~~~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q 131 (134)
+...|+++|.++++.+++|+++++.+|||+|||++++++++..+..... ...+.++||++|+++|+.|
T Consensus 30 ~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~------~~~~~~~lil~p~~~L~~q 97 (216)
T 3b6e_A 30 PELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKK------ASEPGKVIVLVNKVLLVEQ 97 (216)
T ss_dssp CCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHH------TTCCCCEEEEESSHHHHHH
T ss_pred CCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhccc------ccCCCcEEEEECHHHHHHH
Confidence 4458999999999999999999999999999999999999988765321 1135689999999999998
No 49
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.47 E-value=5.1e-15 Score=117.04 Aligned_cols=64 Identities=22% Similarity=0.287 Sum_probs=57.7
Q ss_pred CCCCChHHHHHHHHHHHcCCCe-EEEcCCCCchhHHhHHHHHHHHHhhcCCCCCCCCCCCcEEEEEcCcHHHHHHhc
Q psy7268 58 GLTTPTEIQKYSIPTLLSGKSA-ILVAETGCGKTLSFLAPLVQQILTWKSRPEYKPELNAPLALIITPGRELVFQIG 133 (134)
Q Consensus 58 g~~~~t~iQ~~~i~~~~~g~dv-li~a~tGsGKT~~~~lpil~~~~~~~~~~~~~~~~~~~~~lil~Pt~~La~Qi~ 133 (134)
|+..|+++|+ +||.+++|+|+ ++++|||||||++|++|++..+.. .+.++||++||++|+.|++
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~-----------~~~~~lvl~Ptr~La~Q~~ 65 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALL-----------RRLRTLILAPTRVVAAEME 65 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHH-----------TTCCEEEEESSHHHHHHHH
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHh-----------cCCcEEEECCCHHHHHHHH
Confidence 7889999986 79999999987 899999999999999999988765 4678999999999999986
No 50
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.47 E-value=1.3e-15 Score=124.88 Aligned_cols=78 Identities=17% Similarity=0.211 Sum_probs=62.8
Q ss_pred CCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCeEEEcCCCCchhHHhHHHHHHHHHhhcCCCCCCCCCCCcEEEEEc
Q psy7268 44 TGLAPEIIDIFTKRGLTTPTEIQKYSIPTLLSGKSAILVAETGCGKTLSFLAPLVQQILTWKSRPEYKPELNAPLALIIT 123 (134)
Q Consensus 44 ~~l~~~i~~~l~~~g~~~~t~iQ~~~i~~~~~g~dvli~a~tGsGKT~~~~lpil~~~~~~~~~~~~~~~~~~~~~lil~ 123 (134)
+++++.+++.+.+. .+.++|+|+.+++.+++|+|+++++|||||||++|++|+++.+.. .+.++||++
T Consensus 155 l~~~~~~~~~l~~~-~~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~-----------~~~~vLvl~ 222 (618)
T 2whx_A 155 VTKSGDYVSAITQA-ERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALK-----------RRLRTLILA 222 (618)
T ss_dssp -------CEECBCC-CCCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHH-----------TTCCEEEEE
T ss_pred ccchHHHHHHHhhc-cccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHh-----------CCCeEEEEc
Confidence 55666666655543 588999998899999999999999999999999999999999875 457899999
Q ss_pred CcHHHHHHhc
Q psy7268 124 PGRELVFQIG 133 (134)
Q Consensus 124 Pt~~La~Qi~ 133 (134)
|||+||.|++
T Consensus 223 PtreLa~Qi~ 232 (618)
T 2whx_A 223 PTRVVAAEME 232 (618)
T ss_dssp SSHHHHHHHH
T ss_pred ChHHHHHHHH
Confidence 9999999986
No 51
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.42 E-value=2.8e-13 Score=116.26 Aligned_cols=67 Identities=22% Similarity=0.204 Sum_probs=60.4
Q ss_pred HHHCCCCCChHHHHHHHHHHHcCCCeEEEcCCCCchhHHhHHHHHHHHHhhcCCCCCCCCCCCcEEEEEcCcHHHHHHhc
Q psy7268 54 FTKRGLTTPTEIQKYSIPTLLSGKSAILVAETGCGKTLSFLAPLVQQILTWKSRPEYKPELNAPLALIITPGRELVFQIG 133 (134)
Q Consensus 54 l~~~g~~~~t~iQ~~~i~~~~~g~dvli~a~tGsGKT~~~~lpil~~~~~~~~~~~~~~~~~~~~~lil~Pt~~La~Qi~ 133 (134)
....+| .|+++|.++++.+.+|+++++++|||+|||++|.++++..+. .+.++||++|+++|+.|++
T Consensus 80 ~~~~~f-~L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~------------~g~rvL~l~PtkaLa~Q~~ 146 (1010)
T 2xgj_A 80 ARTYPF-TLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLK------------NKQRVIYTSPIKALSNQKY 146 (1010)
T ss_dssp SCCCSS-CCCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHH------------TTCEEEEEESSHHHHHHHH
T ss_pred HHhCCC-CCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhc------------cCCeEEEECChHHHHHHHH
Confidence 344588 599999999999999999999999999999999999998874 4678999999999999986
No 52
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.41 E-value=6.3e-15 Score=121.89 Aligned_cols=70 Identities=16% Similarity=0.295 Sum_probs=59.6
Q ss_pred HHHHCCCC-----CChHHHH-----HHHHHHH------cCCCeEEEcCCCCchhHHhHHHHHHHHHhhcCCCCCCCCCCC
Q psy7268 53 IFTKRGLT-----TPTEIQK-----YSIPTLL------SGKSAILVAETGCGKTLSFLAPLVQQILTWKSRPEYKPELNA 116 (134)
Q Consensus 53 ~l~~~g~~-----~~t~iQ~-----~~i~~~~------~g~dvli~a~tGsGKT~~~~lpil~~~~~~~~~~~~~~~~~~ 116 (134)
.+...||. +||++|+ ++||.++ +|+|+++++|||||||++|++|+++.+.. .+
T Consensus 202 ~l~~~Gf~~~~~~~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~-----------~~ 270 (673)
T 2wv9_A 202 GLYGNGVILGNGAYVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQ-----------KR 270 (673)
T ss_dssp EEEEEEEECSSSCEEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHH-----------TT
T ss_pred EeeeccccccCCCccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHh-----------CC
Confidence 45556777 8999999 9999888 89999999999999999999999998765 46
Q ss_pred cEEEEEcCcHHHHHHhc
Q psy7268 117 PLALIITPGRELVFQIG 133 (134)
Q Consensus 117 ~~~lil~Pt~~La~Qi~ 133 (134)
.+++|++||++||.|++
T Consensus 271 ~~~lilaPTr~La~Q~~ 287 (673)
T 2wv9_A 271 LRTAVLAPTRVVAAEMA 287 (673)
T ss_dssp CCEEEEESSHHHHHHHH
T ss_pred CcEEEEccHHHHHHHHH
Confidence 78999999999999986
No 53
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.40 E-value=2.6e-13 Score=115.59 Aligned_cols=70 Identities=16% Similarity=0.111 Sum_probs=58.5
Q ss_pred CCCCCChHHHHHHHHHHHcCCCeEEEcCCCCchhHHhHHHHHHHHHhhcCCCCCCCCCCCcEEEEEcCcHHHHHHhc
Q psy7268 57 RGLTTPTEIQKYSIPTLLSGKSAILVAETGCGKTLSFLAPLVQQILTWKSRPEYKPELNAPLALIITPGRELVFQIG 133 (134)
Q Consensus 57 ~g~~~~t~iQ~~~i~~~~~g~dvli~a~tGsGKT~~~~lpil~~~~~~~~~~~~~~~~~~~~~lil~Pt~~La~Qi~ 133 (134)
.|+..|+++|.++++.++.|+|+++++|||+|||++|++|+++.+.... ...+.++||++|+++|+.|++
T Consensus 244 ~~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~-------~~~~~~vLvl~Pt~~L~~Q~~ 313 (936)
T 4a2w_A 244 YETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP-------AGRKAKVVFLATKVPVYEQQK 313 (936)
T ss_dssp ----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCC-------SSCCCCEEEECSSHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhcc-------ccCCCeEEEEeCCHHHHHHHH
Confidence 3678999999999999999999999999999999999999998876432 113678999999999999975
No 54
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.39 E-value=3.4e-13 Score=113.07 Aligned_cols=62 Identities=23% Similarity=0.139 Sum_probs=55.8
Q ss_pred CCCCCChHHHHHHHHHHHcCCCeEEEcCCCCchhHHhHHHHHHHHHhhcCCCCCCCCCCCcEEEEEcCcHHHHHHhc
Q psy7268 57 RGLTTPTEIQKYSIPTLLSGKSAILVAETGCGKTLSFLAPLVQQILTWKSRPEYKPELNAPLALIITPGRELVFQIG 133 (134)
Q Consensus 57 ~g~~~~t~iQ~~~i~~~~~g~dvli~a~tGsGKT~~~~lpil~~~~~~~~~~~~~~~~~~~~~lil~Pt~~La~Qi~ 133 (134)
+|. .|+++|..++|.++.|+ ++.++||+|||++|++|++.... .+.+++|++||++||.|++
T Consensus 71 lg~-~p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l------------~g~~vlVltPTreLA~Q~~ 132 (853)
T 2fsf_A 71 FGM-RHFDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNAL------------TGKGVHVVTVNDYLAQRDA 132 (853)
T ss_dssp HSC-CCCHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHHT------------TSSCCEEEESSHHHHHHHH
T ss_pred cCC-CCChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHHH------------cCCcEEEEcCCHHHHHHHH
Confidence 476 99999999999999998 89999999999999999987653 4567999999999999985
No 55
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.38 E-value=5.9e-13 Score=114.17 Aligned_cols=65 Identities=22% Similarity=0.158 Sum_probs=58.7
Q ss_pred HCCCCCChHHHHHHHHHHHcCCCeEEEcCCCCchhHHhHHHHHHHHHhhcCCCCCCCCCCCcEEEEEcCcHHHHHHhc
Q psy7268 56 KRGLTTPTEIQKYSIPTLLSGKSAILVAETGCGKTLSFLAPLVQQILTWKSRPEYKPELNAPLALIITPGRELVFQIG 133 (134)
Q Consensus 56 ~~g~~~~t~iQ~~~i~~~~~g~dvli~a~tGsGKT~~~~lpil~~~~~~~~~~~~~~~~~~~~~lil~Pt~~La~Qi~ 133 (134)
..+| .|+++|.++|+.+++|+|+++++|||+|||++|++++...+. .+.++||++|+++|+.|++
T Consensus 35 ~~~f-~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~------------~g~~vlvl~PtraLa~Q~~ 99 (997)
T 4a4z_A 35 SWPF-ELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHR------------NMTKTIYTSPIKALSNQKF 99 (997)
T ss_dssp CCSS-CCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHH------------TTCEEEEEESCGGGHHHHH
T ss_pred hCCC-CCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHh------------cCCeEEEEeCCHHHHHHHH
Confidence 3578 689999999999999999999999999999999999888764 4678999999999999986
No 56
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.35 E-value=1.3e-12 Score=94.72 Aligned_cols=67 Identities=13% Similarity=0.222 Sum_probs=57.7
Q ss_pred CCChHHHHHHHHHHHcCCCeEEEcCCCCchhHHhHHHHHHHHHhhcCCCCCCCCCCCcEEEEEcCcHHHHHHhc
Q psy7268 60 TTPTEIQKYSIPTLLSGKSAILVAETGCGKTLSFLAPLVQQILTWKSRPEYKPELNAPLALIITPGRELVFQIG 133 (134)
Q Consensus 60 ~~~t~iQ~~~i~~~~~g~dvli~a~tGsGKT~~~~lpil~~~~~~~~~~~~~~~~~~~~~lil~Pt~~La~Qi~ 133 (134)
..++++|.++++.+..|++++++|+||||||..+.++++........ ..+.+++++.|+++|+.|++
T Consensus 60 ~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~-------~~~~~~l~~~p~~~la~q~~ 126 (235)
T 3llm_A 60 LPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR-------AAECNIVVTQPRRISAVSVA 126 (235)
T ss_dssp SGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC-------GGGCEEEEEESSHHHHHHHH
T ss_pred CChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC-------CCceEEEEeccchHHHHHHH
Confidence 36789999999999999999999999999999999999887765321 13568999999999999985
No 57
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.34 E-value=3.5e-12 Score=110.72 Aligned_cols=77 Identities=19% Similarity=0.157 Sum_probs=65.2
Q ss_pred CCCCHHHHHHHHH-CCCCCChHHHHHHHHHHHc----CC--CeEEEcCCCCchhHHhHHHHHHHHHhhcCCCCCCCCCCC
Q psy7268 44 TGLAPEIIDIFTK-RGLTTPTEIQKYSIPTLLS----GK--SAILVAETGCGKTLSFLAPLVQQILTWKSRPEYKPELNA 116 (134)
Q Consensus 44 ~~l~~~i~~~l~~-~g~~~~t~iQ~~~i~~~~~----g~--dvli~a~tGsGKT~~~~lpil~~~~~~~~~~~~~~~~~~ 116 (134)
++.++...+.+.+ .+| .+|++|.++++.++. |+ |++++++||+|||++++++++..+. .+
T Consensus 586 ~~~~~~~~~~~~~~f~~-~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~------------~g 652 (1151)
T 2eyq_A 586 FKHDREQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVD------------NH 652 (1151)
T ss_dssp CCCCHHHHHHHHHTCCS-CCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHT------------TT
T ss_pred CCCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHH------------hC
Confidence 4566777777755 588 579999999999886 66 9999999999999999999887653 45
Q ss_pred cEEEEEcCcHHHHHHhc
Q psy7268 117 PLALIITPGRELVFQIG 133 (134)
Q Consensus 117 ~~~lil~Pt~~La~Qi~ 133 (134)
.+++|++||++|+.|.+
T Consensus 653 ~~vlvlvPt~~La~Q~~ 669 (1151)
T 2eyq_A 653 KQVAVLVPTTLLAQQHY 669 (1151)
T ss_dssp CEEEEECSSHHHHHHHH
T ss_pred CeEEEEechHHHHHHHH
Confidence 69999999999999975
No 58
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.33 E-value=2.1e-12 Score=108.78 Aligned_cols=62 Identities=24% Similarity=0.244 Sum_probs=56.0
Q ss_pred CCCCCChHHHHHHHHHHHcCCCeEEEcCCCCchhHHhHHHHHHHHHhhcCCCCCCCCCCCcEEEEEcCcHHHHHHhc
Q psy7268 57 RGLTTPTEIQKYSIPTLLSGKSAILVAETGCGKTLSFLAPLVQQILTWKSRPEYKPELNAPLALIITPGRELVFQIG 133 (134)
Q Consensus 57 ~g~~~~t~iQ~~~i~~~~~g~dvli~a~tGsGKT~~~~lpil~~~~~~~~~~~~~~~~~~~~~lil~Pt~~La~Qi~ 133 (134)
+|+ +|+++|..++|.++.|+ ++.++||+|||++|.+|++.... .+.+++||+||++||.|++
T Consensus 108 lG~-rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL------------~g~~v~VvTpTreLA~Qda 169 (922)
T 1nkt_A 108 LDQ-RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNAL------------AGNGVHIVTVNDYLAKRDS 169 (922)
T ss_dssp HSC-CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHT------------TTSCEEEEESSHHHHHHHH
T ss_pred cCC-CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHH------------hCCCeEEEeCCHHHHHHHH
Confidence 699 99999999999999998 89999999999999999976554 3457999999999999975
No 59
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.33 E-value=1.9e-12 Score=96.11 Aligned_cols=62 Identities=24% Similarity=0.182 Sum_probs=54.6
Q ss_pred CChHHHHHHHHHHHcCCCeEEEcCCCCchhHHhHHHHHHHHHhhcCCCCCCCCCCCcEEEEEcCcHHHHHHhc
Q psy7268 61 TPTEIQKYSIPTLLSGKSAILVAETGCGKTLSFLAPLVQQILTWKSRPEYKPELNAPLALIITPGRELVFQIG 133 (134)
Q Consensus 61 ~~t~iQ~~~i~~~~~g~dvli~a~tGsGKT~~~~lpil~~~~~~~~~~~~~~~~~~~~~lil~Pt~~La~Qi~ 133 (134)
.|+++|.++++.++++++.++++|||+|||++++.++...+.. ...++||++|+++|+.|.+
T Consensus 113 ~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~-----------~~~~~lil~Pt~~L~~q~~ 174 (282)
T 1rif_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLEN-----------YEGKILIIVPTTALTTQMA 174 (282)
T ss_dssp CCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHH-----------CSSEEEEECSSHHHHHHHH
T ss_pred CccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHc-----------CCCeEEEEECCHHHHHHHH
Confidence 8999999999999988888999999999999998887776643 3347999999999999975
No 60
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.33 E-value=1.8e-12 Score=103.03 Aligned_cols=62 Identities=24% Similarity=0.182 Sum_probs=56.3
Q ss_pred CChHHHHHHHHHHHcCCCeEEEcCCCCchhHHhHHHHHHHHHhhcCCCCCCCCCCCcEEEEEcCcHHHHHHhc
Q psy7268 61 TPTEIQKYSIPTLLSGKSAILVAETGCGKTLSFLAPLVQQILTWKSRPEYKPELNAPLALIITPGRELVFQIG 133 (134)
Q Consensus 61 ~~t~iQ~~~i~~~~~g~dvli~a~tGsGKT~~~~lpil~~~~~~~~~~~~~~~~~~~~~lil~Pt~~La~Qi~ 133 (134)
.|++.|.++++.++++++++++++||+|||++|+.++...+.. .+.++||++|+++|+.|.+
T Consensus 113 ~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~-----------~~~~vlvl~P~~~L~~Q~~ 174 (510)
T 2oca_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLEN-----------YEGKILIIVPTTALTTQMA 174 (510)
T ss_dssp CCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHH-----------CSSEEEEEESSHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhC-----------CCCeEEEEECcHHHHHHHH
Confidence 8999999999999999999999999999999999998887753 3348999999999999975
No 61
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.32 E-value=6.8e-13 Score=108.96 Aligned_cols=68 Identities=24% Similarity=0.199 Sum_probs=57.9
Q ss_pred CCCCChHHHHHHHHHHHcCCCeEEEcCCCCchhHHhHHHHHHHHHhhcCCCCCCCCCCCcEEEEEcCcHHHHHHh
Q psy7268 58 GLTTPTEIQKYSIPTLLSGKSAILVAETGCGKTLSFLAPLVQQILTWKSRPEYKPELNAPLALIITPGRELVFQI 132 (134)
Q Consensus 58 g~~~~t~iQ~~~i~~~~~g~dvli~a~tGsGKT~~~~lpil~~~~~~~~~~~~~~~~~~~~~lil~Pt~~La~Qi 132 (134)
+| .|+++|.++++.+++|+|+++.+|||+|||++|++|++..+..... ...+.++||++|+++|+.|.
T Consensus 5 ~~-~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~------~~~~~~vlvl~P~~~L~~Q~ 72 (699)
T 4gl2_A 5 ML-QLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKK------ASEPGKVIVLVNKVLLVEQL 72 (699)
T ss_dssp ---CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHH------HTCCCCBCCEESCSHHHHHH
T ss_pred CC-CccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccc------cCCCCeEEEEECCHHHHHHH
Confidence 34 7999999999999999999999999999999999999998875421 01236799999999999997
No 62
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.32 E-value=2.5e-12 Score=108.47 Aligned_cols=62 Identities=24% Similarity=0.205 Sum_probs=55.9
Q ss_pred CCCCCChHHHHHHHHHHHcCCCeEEEcCCCCchhHHhHHHHHHHHHhhcCCCCCCCCCCCcEEEEEcCcHHHHHHhc
Q psy7268 57 RGLTTPTEIQKYSIPTLLSGKSAILVAETGCGKTLSFLAPLVQQILTWKSRPEYKPELNAPLALIITPGRELVFQIG 133 (134)
Q Consensus 57 ~g~~~~t~iQ~~~i~~~~~g~dvli~a~tGsGKT~~~~lpil~~~~~~~~~~~~~~~~~~~~~lil~Pt~~La~Qi~ 133 (134)
+|+ +|+++|..++|.++.|+ ++.+.||+|||++|.+|++.... .+.+++|++||++||.|++
T Consensus 76 lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL------------~G~qv~VvTPTreLA~Qda 137 (997)
T 2ipc_A 76 LGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNAL------------TGKGVHVVTVNDYLARRDA 137 (997)
T ss_dssp TCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHT------------TCSCCEEEESSHHHHHHHH
T ss_pred hCC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHH------------hCCCEEEEeCCHHHHHHHH
Confidence 699 99999999999999998 89999999999999999975543 3557999999999999975
No 63
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.27 E-value=9.9e-12 Score=104.20 Aligned_cols=88 Identities=22% Similarity=0.326 Sum_probs=70.8
Q ss_pred CCCCCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHc-CCCeEEEcCCCCchhHHhHHHHHHHHHhhcCCCCCCCCC
Q psy7268 36 IDLGTFEDTGLAPEIIDIFTKRGLTTPTEIQKYSIPTLLS-GKSAILVAETGCGKTLSFLAPLVQQILTWKSRPEYKPEL 114 (134)
Q Consensus 36 ~~~~~f~~~~l~~~i~~~l~~~g~~~~t~iQ~~~i~~~~~-g~dvli~a~tGsGKT~~~~lpil~~~~~~~~~~~~~~~~ 114 (134)
.++..|+++++++.+.+.+.+.+ ..|+++|+++|+.++. |++++++||||+|||+ ++|++....... ..
T Consensus 69 ~~~~~f~~~~l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTt--llp~ll~~~~~~-------~~ 138 (773)
T 2xau_A 69 GKINPFTGREFTPKYVDILKIRR-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTT--QIPQFVLFDEMP-------HL 138 (773)
T ss_dssp SSBCTTTCSBCCHHHHHHHHHHT-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHH--HHHHHHHHHHCG-------GG
T ss_pred CCCCCccccCCCHHHHHHHHHhh-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHH--HHHHHHHHhccc-------cC
Confidence 56778999999999999999988 6999999999998775 5679999999999999 566663222111 01
Q ss_pred CCcEEEEEcCcHHHHHHhc
Q psy7268 115 NAPLALIITPGRELVFQIG 133 (134)
Q Consensus 115 ~~~~~lil~Pt~~La~Qi~ 133 (134)
.+.++++++|+++|+.|++
T Consensus 139 ~g~~ilvl~P~r~La~q~~ 157 (773)
T 2xau_A 139 ENTQVACTQPRRVAAMSVA 157 (773)
T ss_dssp GTCEEEEEESCHHHHHHHH
T ss_pred CCceEEecCchHHHHHHHH
Confidence 2567999999999999875
No 64
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.27 E-value=1.4e-11 Score=97.03 Aligned_cols=58 Identities=26% Similarity=0.304 Sum_probs=52.5
Q ss_pred CChHHHHHHHHHHHcCCCeEEEcCCCCchhHHhHHHHHHHHHhhcCCCCCCCCCCCcEEEEEcCcHHHHHHhc
Q psy7268 61 TPTEIQKYSIPTLLSGKSAILVAETGCGKTLSFLAPLVQQILTWKSRPEYKPELNAPLALIITPGRELVFQIG 133 (134)
Q Consensus 61 ~~t~iQ~~~i~~~~~g~dvli~a~tGsGKT~~~~lpil~~~~~~~~~~~~~~~~~~~~~lil~Pt~~La~Qi~ 133 (134)
.|+++|.++++.++.+++++++++||+|||++|+.++... +.++||++|+++|+.|.+
T Consensus 93 ~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~---------------~~~~Lvl~P~~~L~~Q~~ 150 (472)
T 2fwr_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL---------------STPTLIVVPTLALAEQWK 150 (472)
T ss_dssp CBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH---------------CSCEEEEESSHHHHHHHH
T ss_pred CcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc---------------CCCEEEEECCHHHHHHHH
Confidence 6899999999999999999999999999999999887753 346999999999999975
No 65
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.26 E-value=6.4e-12 Score=101.55 Aligned_cols=60 Identities=23% Similarity=0.166 Sum_probs=52.7
Q ss_pred CCCCChHHHHHHHHH----HHcCCCeEEEcCCCCchhHHhHHHHHHHHHhhcCCCCCCCCCCCcEEEEEcCcHHHHHHhc
Q psy7268 58 GLTTPTEIQKYSIPT----LLSGKSAILVAETGCGKTLSFLAPLVQQILTWKSRPEYKPELNAPLALIITPGRELVFQIG 133 (134)
Q Consensus 58 g~~~~t~iQ~~~i~~----~~~g~dvli~a~tGsGKT~~~~lpil~~~~~~~~~~~~~~~~~~~~~lil~Pt~~La~Qi~ 133 (134)
|| .+++.|.+.+.. +..|+|+++.+|||+|||++|++|++. .+.+++|++||++|+.|+.
T Consensus 1 ~~-~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~---------------~~~~v~i~~pt~~l~~q~~ 64 (551)
T 3crv_A 1 MV-KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLE---------------VKPKVLFVVRTHNEFYPIY 64 (551)
T ss_dssp CC-SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHH---------------HCSEEEEEESSGGGHHHHH
T ss_pred CC-CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHh---------------CCCeEEEEcCCHHHHHHHH
Confidence 56 789999998765 457999999999999999999999998 1468999999999999985
No 66
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.25 E-value=1.7e-12 Score=102.79 Aligned_cols=51 Identities=18% Similarity=0.341 Sum_probs=45.6
Q ss_pred HHHcCCCeEEEcCCCCchhHHhHHHHHHHHHhhcCCCCCCCCCCCcEEEEEcCcHHHHHHhc
Q psy7268 72 TLLSGKSAILVAETGCGKTLSFLAPLVQQILTWKSRPEYKPELNAPLALIITPGRELVFQIG 133 (134)
Q Consensus 72 ~~~~g~dvli~a~tGsGKT~~~~lpil~~~~~~~~~~~~~~~~~~~~~lil~Pt~~La~Qi~ 133 (134)
.+..|+++++++|||||||++|++|+++.+.. .+.++||++|||+|+.|++
T Consensus 17 ~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~-----------~~~~~lvl~Ptr~La~Q~~ 67 (459)
T 2z83_A 17 MLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQ-----------QRLRTAVLAPTRVVAAEMA 67 (459)
T ss_dssp GGSTTCEEEECCCTTSCTTTTHHHHHHHHHHH-----------TTCCEEEEECSHHHHHHHH
T ss_pred HHhcCCcEEEECCCCCCHHHHHHHHHHHHHHh-----------CCCcEEEECchHHHHHHHH
Confidence 45678899999999999999999999998865 4578999999999999986
No 67
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.24 E-value=1.6e-11 Score=95.03 Aligned_cols=61 Identities=23% Similarity=0.280 Sum_probs=55.6
Q ss_pred CChHHHHHHHHHHHcCCCeEEEcCCCCchhHHhHHHHHHHHHhhcCCCCCCCCCCCcEEEEEcCcHHHHHHhc
Q psy7268 61 TPTEIQKYSIPTLLSGKSAILVAETGCGKTLSFLAPLVQQILTWKSRPEYKPELNAPLALIITPGRELVFQIG 133 (134)
Q Consensus 61 ~~t~iQ~~~i~~~~~g~dvli~a~tGsGKT~~~~lpil~~~~~~~~~~~~~~~~~~~~~lil~Pt~~La~Qi~ 133 (134)
.|+++|.++++.++.+ ++++.+|||+|||++++++++..+.. .+.++||++|+++|+.|.+
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~-----------~~~~~liv~P~~~L~~q~~ 69 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTK-----------YGGKVLMLAPTKPLVLQHA 69 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHHH-----------SCSCEEEECSSHHHHHHHH
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHhc-----------CCCeEEEEECCHHHHHHHH
Confidence 7899999999999999 99999999999999999999988762 4568999999999999875
No 68
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.24 E-value=2.8e-12 Score=101.12 Aligned_cols=50 Identities=24% Similarity=0.420 Sum_probs=45.6
Q ss_pred HHcCCCeEEEcCCCCchhHHhHHHHHHHHHhhcCCCCCCCCCCCcEEEEEcCcHHHHHHhc
Q psy7268 73 LLSGKSAILVAETGCGKTLSFLAPLVQQILTWKSRPEYKPELNAPLALIITPGRELVFQIG 133 (134)
Q Consensus 73 ~~~g~dvli~a~tGsGKT~~~~lpil~~~~~~~~~~~~~~~~~~~~~lil~Pt~~La~Qi~ 133 (134)
+++|+|+++++|||||||++|++|+++.+.. ++.+++|++||++||.|++
T Consensus 5 l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~-----------~~~~~lil~Ptr~La~Q~~ 54 (440)
T 1yks_A 5 LKKGMTTVLDFHPGAGKTRRFLPQILAECAR-----------RRLRTLVLAPTRVVLSEMK 54 (440)
T ss_dssp TSTTCEEEECCCTTSSTTTTHHHHHHHHHHH-----------TTCCEEEEESSHHHHHHHH
T ss_pred hhCCCCEEEEcCCCCCHHHHHHHHHHHHHHh-----------cCCeEEEEcchHHHHHHHH
Confidence 5689999999999999999999999998865 4678999999999999986
No 69
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.22 E-value=1.2e-11 Score=101.46 Aligned_cols=62 Identities=21% Similarity=0.109 Sum_probs=53.4
Q ss_pred CChHHHHHHHHH----HHcCCCeEEEcCCCCchhHHhHHHHHHHHHhhcCCCCCCCCCCCcEEEEEcCcHHHHHHhc
Q psy7268 61 TPTEIQKYSIPT----LLSGKSAILVAETGCGKTLSFLAPLVQQILTWKSRPEYKPELNAPLALIITPGRELVFQIG 133 (134)
Q Consensus 61 ~~t~iQ~~~i~~----~~~g~dvli~a~tGsGKT~~~~lpil~~~~~~~~~~~~~~~~~~~~~lil~Pt~~La~Qi~ 133 (134)
.|.+.|.+.+.. +.+|+++++.+|||+|||++|++|++..+.. .+.+++|++||++|+.|+.
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~-----------~~~kvli~t~T~~l~~Qi~ 68 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSE-----------RKLKVLYLVRTNSQEEQVI 68 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHH-----------HTCEEEEEESSHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhh-----------cCCeEEEECCCHHHHHHHH
Confidence 578999998864 4589999999999999999999999999865 3568999999999999985
No 70
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.22 E-value=4.8e-11 Score=86.98 Aligned_cols=58 Identities=26% Similarity=0.304 Sum_probs=51.0
Q ss_pred CChHHHHHHHHHHHcCCCeEEEcCCCCchhHHhHHHHHHHHHhhcCCCCCCCCCCCcEEEEEcCcHHHHHHhc
Q psy7268 61 TPTEIQKYSIPTLLSGKSAILVAETGCGKTLSFLAPLVQQILTWKSRPEYKPELNAPLALIITPGRELVFQIG 133 (134)
Q Consensus 61 ~~t~iQ~~~i~~~~~g~dvli~a~tGsGKT~~~~lpil~~~~~~~~~~~~~~~~~~~~~lil~Pt~~La~Qi~ 133 (134)
.++++|.+++..++.++++++++|||+|||.+++.++... +.+++|++|+++|+.|.+
T Consensus 93 ~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~---------------~~~~liv~P~~~L~~q~~ 150 (237)
T 2fz4_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL---------------STPTLIVVPTLALAEQWK 150 (237)
T ss_dssp CCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS---------------CSCEEEEESSHHHHHHHH
T ss_pred CcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc---------------CCCEEEEeCCHHHHHHHH
Confidence 7899999999999999999999999999999987776542 346999999999999875
No 71
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.19 E-value=1.9e-11 Score=98.63 Aligned_cols=61 Identities=26% Similarity=0.177 Sum_probs=49.3
Q ss_pred CCCCCChHHHHHHHHH----HHcCCCeEEEcCCCCchhHHhHHHHHHHHHhhcCCCCCCCCCCCcEEEEEcCcHHHHHHh
Q psy7268 57 RGLTTPTEIQKYSIPT----LLSGKSAILVAETGCGKTLSFLAPLVQQILTWKSRPEYKPELNAPLALIITPGRELVFQI 132 (134)
Q Consensus 57 ~g~~~~t~iQ~~~i~~----~~~g~dvli~a~tGsGKT~~~~lpil~~~~~~~~~~~~~~~~~~~~~lil~Pt~~La~Qi 132 (134)
.|| .|+++|.+++.. +..|+++++.+|||+|||++|++|++.. +.+++|++||++|+.|+
T Consensus 4 ~~~-~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~---------------~~~~~~~~~t~~l~~q~ 67 (540)
T 2vl7_A 4 LKL-QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQL---------------KKKVLIFTRTHSQLDSI 67 (540)
T ss_dssp ------CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH---------------TCEEEEEESCHHHHHHH
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhC---------------CCcEEEEcCCHHHHHHH
Confidence 478 899999998754 4589999999999999999999998652 46899999999999998
Q ss_pred c
Q psy7268 133 G 133 (134)
Q Consensus 133 ~ 133 (134)
.
T Consensus 68 ~ 68 (540)
T 2vl7_A 68 Y 68 (540)
T ss_dssp H
T ss_pred H
Confidence 5
No 72
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.15 E-value=2.3e-11 Score=95.62 Aligned_cols=48 Identities=23% Similarity=0.344 Sum_probs=42.7
Q ss_pred cCCCeEEEcCCCCchhHHhHHHHHHHHHhhcCCCCCCCCCCCcEEEEEcCcHHHHHHhc
Q psy7268 75 SGKSAILVAETGCGKTLSFLAPLVQQILTWKSRPEYKPELNAPLALIITPGRELVFQIG 133 (134)
Q Consensus 75 ~g~dvli~a~tGsGKT~~~~lpil~~~~~~~~~~~~~~~~~~~~~lil~Pt~~La~Qi~ 133 (134)
+|+|+++++|||||||++|++|+++.+.. .+.+++|++||++|+.|++
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~-----------~g~~~lvl~Pt~~La~Q~~ 48 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVK-----------KRLRTVILAPTRVVASEMY 48 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHH-----------TTCCEEEEESSHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHh-----------CCCCEEEECcHHHHHHHHH
Confidence 47899999999999999999999977764 5678999999999999986
No 73
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=98.99 E-value=8.5e-10 Score=89.32 Aligned_cols=70 Identities=20% Similarity=0.271 Sum_probs=43.5
Q ss_pred CChHHHHHHHHHHHc----C-CCeEEEcCCCCchhHHhHHHHHHHHHhhcCCCCCCCCCCCcEEEEEcCcHHHHHHhc
Q psy7268 61 TPTEIQKYSIPTLLS----G-KSAILVAETGCGKTLSFLAPLVQQILTWKSRPEYKPELNAPLALIITPGRELVFQIG 133 (134)
Q Consensus 61 ~~t~iQ~~~i~~~~~----g-~dvli~a~tGsGKT~~~~lpil~~~~~~~~~~~~~~~~~~~~~lil~Pt~~La~Qi~ 133 (134)
.|+++|.++++.++. | ++++++++||+|||+++ ++++..+....... .....+.++||++|+++|+.|.+
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~-~~~~~~l~~~~~~~--~~~~~~~~vlil~P~~~L~~Q~~ 252 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVA-FQISWKLWSARWNR--TGDYRKPRILFLADRNVLVDDPK 252 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHH-HHHHHHHHHTTCCS--SCSSSCCCEEEEEC---------
T ss_pred CchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHH-HHHHHHHHhccccc--ccccCCCeEEEEeCCHHHHHHHH
Confidence 699999999998875 5 56899999999999996 45555554432100 01124678999999999999976
No 74
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=98.93 E-value=4e-11 Score=99.01 Aligned_cols=57 Identities=21% Similarity=0.156 Sum_probs=46.6
Q ss_pred ChHHHHHHHHHHHcCCCeEEEcCCCCchhHHhHHHHHHHHHhhcCCCCCCCCCCCcEEEEEcCcHHHHHHhc
Q psy7268 62 PTEIQKYSIPTLLSGKSAILVAETGCGKTLSFLAPLVQQILTWKSRPEYKPELNAPLALIITPGRELVFQIG 133 (134)
Q Consensus 62 ~t~iQ~~~i~~~~~g~dvli~a~tGsGKT~~~~lpil~~~~~~~~~~~~~~~~~~~~~lil~Pt~~La~Qi~ 133 (134)
+.+.|+.+++.+..++|++++||||||||.+|.+++++ ++.+++|++|||+||.|++
T Consensus 218 ~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~---------------~g~~vLVl~PTReLA~Qia 274 (666)
T 3o8b_A 218 VFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAA---------------QGYKVLVLNPSVAATLGFG 274 (666)
T ss_dssp SCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHH---------------TTCCEEEEESCHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHH---------------CCCeEEEEcchHHHHHHHH
Confidence 34455555555668889999999999999999998875 2457999999999999986
No 75
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=98.79 E-value=4.3e-09 Score=90.68 Aligned_cols=76 Identities=14% Similarity=0.141 Sum_probs=57.1
Q ss_pred HHHHHHHHHCC-------CCCChHHHHHHHHHHHc--------------CCCeEEEcCCCCchhHHhHHHHHHHHHhhcC
Q psy7268 48 PEIIDIFTKRG-------LTTPTEIQKYSIPTLLS--------------GKSAILVAETGCGKTLSFLAPLVQQILTWKS 106 (134)
Q Consensus 48 ~~i~~~l~~~g-------~~~~t~iQ~~~i~~~~~--------------g~dvli~a~tGsGKT~~~~lpil~~~~~~~~ 106 (134)
+.+++.+.+.- -..|+++|..+++.++. +++.++.++||||||+++ ++++..+...
T Consensus 251 ~~ll~~l~~f~~~~~~~~~~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~~-- 327 (1038)
T 2w00_A 251 HTLLNVLVNYSVFDSSQTLLVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATEL-- 327 (1038)
T ss_dssp HHHHHHHHHSEEECTTCCEEECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTTC--
T ss_pred HHHHHHHHhheeeccccccccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHhc--
Confidence 45555565531 12599999999998875 368999999999999997 6666554321
Q ss_pred CCCCCCCCCCcEEEEEcCcHHHHHHhc
Q psy7268 107 RPEYKPELNAPLALIITPGRELVFQIG 133 (134)
Q Consensus 107 ~~~~~~~~~~~~~lil~Pt~~La~Qi~ 133 (134)
....++|||+|+++|+.|+.
T Consensus 328 -------~~~~rvLvlvpr~eL~~Q~~ 347 (1038)
T 2w00_A 328 -------DFIDKVFFVVDRKDLDYQTM 347 (1038)
T ss_dssp -------TTCCEEEEEECGGGCCHHHH
T ss_pred -------CCCceEEEEeCcHHHHHHHH
Confidence 13468999999999999974
No 76
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=98.66 E-value=9.5e-09 Score=85.11 Aligned_cols=46 Identities=20% Similarity=0.169 Sum_probs=36.8
Q ss_pred HHHcCCCeEEEcCCCCchhHHhHHHHHHHHHhhcCCCCCCCCCCCcEEEEEcCcHHHHHHhc
Q psy7268 72 TLLSGKSAILVAETGCGKTLSFLAPLVQQILTWKSRPEYKPELNAPLALIITPGRELVFQIG 133 (134)
Q Consensus 72 ~~~~g~dvli~a~tGsGKT~~~~lpil~~~~~~~~~~~~~~~~~~~~~lil~Pt~~La~Qi~ 133 (134)
..++|++++++||||||||+ +++..+... .+++|++|||+||.|++
T Consensus 151 r~l~rk~vlv~apTGSGKT~----~al~~l~~~------------~~gl~l~PtR~LA~Qi~ 196 (677)
T 3rc3_A 151 RAMQRKIIFHSGPTNSGKTY----HAIQKYFSA------------KSGVYCGPLKLLAHEIF 196 (677)
T ss_dssp HTSCCEEEEEECCTTSSHHH----HHHHHHHHS------------SSEEEEESSHHHHHHHH
T ss_pred HhcCCCEEEEEcCCCCCHHH----HHHHHHHhc------------CCeEEEeCHHHHHHHHH
Confidence 45689999999999999997 555555542 23599999999999986
No 77
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.46 E-value=6.2e-07 Score=73.36 Aligned_cols=61 Identities=16% Similarity=0.190 Sum_probs=51.1
Q ss_pred hHHHHHHHHHHHcCCCeEEEcCCCCchh--HHhHHHHHHHHHhhcCCCCCCCCCCCcEEEEEcCcHHHHHHhc
Q psy7268 63 TEIQKYSIPTLLSGKSAILVAETGCGKT--LSFLAPLVQQILTWKSRPEYKPELNAPLALIITPGRELVFQIG 133 (134)
Q Consensus 63 t~iQ~~~i~~~~~g~dvli~a~tGsGKT--~~~~lpil~~~~~~~~~~~~~~~~~~~~~lil~Pt~~La~Qi~ 133 (134)
++.|+.+++.++.++++++.|++||||| ++++++.+..+.. ..+.++++++||.++|.++.
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~----------~~~~~vll~APTg~AA~~L~ 213 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMAD----------GERCRIRLAAPTGKAAARLT 213 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCS----------SCCCCEEEEBSSHHHHHHHH
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhh----------cCCCeEEEEeCChhHHHHHH
Confidence 7899999999999999999999999999 6677777765421 14568999999999999863
No 78
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=98.35 E-value=8.8e-07 Score=70.02 Aligned_cols=61 Identities=18% Similarity=0.170 Sum_probs=46.1
Q ss_pred CChHHHHHHHHHHH----cCCCeEEEcCCCCchhHHhHHHHHHHHHhhcCCCCCCCCCCCcEEEEEcCcHHHHHHh
Q psy7268 61 TPTEIQKYSIPTLL----SGKSAILVAETGCGKTLSFLAPLVQQILTWKSRPEYKPELNAPLALIITPGRELVFQI 132 (134)
Q Consensus 61 ~~t~iQ~~~i~~~~----~g~dvli~a~tGsGKT~~~~lpil~~~~~~~~~~~~~~~~~~~~~lil~Pt~~La~Qi 132 (134)
.++|+|.+++..+. .|+++++..+||+|||+..+ +++..+.... ...++|||+|+ +|+.|.
T Consensus 37 ~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai-~~i~~~~~~~---------~~~~~LIv~P~-~l~~qw 101 (500)
T 1z63_A 37 NLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTI-AVFSDAKKEN---------ELTPSLVICPL-SVLKNW 101 (500)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHH-HHHHHHHHTT---------CCSSEEEEECS-TTHHHH
T ss_pred cchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHH-HHHHHHHhcC---------CCCCEEEEccH-HHHHHH
Confidence 78999999998763 68899999999999999974 4444443321 34579999995 577764
No 79
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=98.33 E-value=1.7e-06 Score=72.34 Aligned_cols=61 Identities=26% Similarity=0.274 Sum_probs=53.7
Q ss_pred CCCCCChHHHHHHHHHHHcCCCeEEEcCCCCchhHHhHHHHHHHHHhhcCCCCCCCCCCCcEEEEEcCcHHHHHHh
Q psy7268 57 RGLTTPTEIQKYSIPTLLSGKSAILVAETGCGKTLSFLAPLVQQILTWKSRPEYKPELNAPLALIITPGRELVFQI 132 (134)
Q Consensus 57 ~g~~~~t~iQ~~~i~~~~~g~dvli~a~tGsGKT~~~~lpil~~~~~~~~~~~~~~~~~~~~~lil~Pt~~La~Qi 132 (134)
+|. +|+++|-.....+..|+ |....||+|||+++.+|++-..+ .|..+.|++|+++||.|-
T Consensus 72 lg~-r~~dvQligg~~L~~G~--iaEM~TGEGKTLva~lp~~lnAL------------~G~~vhVvT~ndyLA~rd 132 (822)
T 3jux_A 72 LGM-RPFDVQVMGGIALHEGK--VAEMKTGEGKTLAATMPIYLNAL------------IGKGVHLVTVNDYLARRD 132 (822)
T ss_dssp TSC-CCCHHHHHHHHHHHTTC--EEECCTTSCHHHHTHHHHHHHHT------------TSSCEEEEESSHHHHHHH
T ss_pred hCC-CCcHHHHHHHHHHhCCC--hhhccCCCCccHHHHHHHHHHHh------------cCCceEEEeccHHHHHhH
Confidence 588 89999999998888888 88999999999999999986654 466799999999999884
No 80
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=98.25 E-value=1.5e-06 Score=74.50 Aligned_cols=61 Identities=30% Similarity=0.232 Sum_probs=49.0
Q ss_pred CChHHHHHHHHHHHc--CCCeEEEcCCCCchhHHhHHHHHHHHHhhcCCCCCCCCCCCcEEEEEcCcHHHHHHh
Q psy7268 61 TPTEIQKYSIPTLLS--GKSAILVAETGCGKTLSFLAPLVQQILTWKSRPEYKPELNAPLALIITPGRELVFQI 132 (134)
Q Consensus 61 ~~t~iQ~~~i~~~~~--g~dvli~a~tGsGKT~~~~lpil~~~~~~~~~~~~~~~~~~~~~lil~Pt~~La~Qi 132 (134)
.|+|+|..++..++. +.+++++.+||+|||+.++..+...+... ...++|||+|+ .|+.|-
T Consensus 153 ~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g----------~~~rvLIVvP~-sLl~Qw 215 (968)
T 3dmq_A 153 SLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSG----------AAERVLIIVPE-TLQHQW 215 (968)
T ss_dssp CCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHTS----------SCCCEEEECCT-TTHHHH
T ss_pred CCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHhC----------CCCeEEEEeCH-HHHHHH
Confidence 789999999998875 45789999999999999977766655421 23479999999 888774
No 81
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=98.03 E-value=1.6e-05 Score=65.24 Aligned_cols=60 Identities=25% Similarity=0.253 Sum_probs=46.7
Q ss_pred CChHHHHHHHHHHHcCCC-eEEEcCCCCchhHHhHHHHHHHHHhhcCCCCCCCCCCCcEEEEEcCcHHHHHHh
Q psy7268 61 TPTEIQKYSIPTLLSGKS-AILVAETGCGKTLSFLAPLVQQILTWKSRPEYKPELNAPLALIITPGRELVFQI 132 (134)
Q Consensus 61 ~~t~iQ~~~i~~~~~g~d-vli~a~tGsGKT~~~~lpil~~~~~~~~~~~~~~~~~~~~~lil~Pt~~La~Qi 132 (134)
.+++-|.+|+..++..++ .+|+||+|||||.+..--+.+ +.. ++.++|+.+||..-+..+
T Consensus 189 ~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~-l~~-----------~~~~ILv~a~TN~AvD~i 249 (646)
T 4b3f_X 189 CLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQ-AVK-----------QGLKVLCCAPSNIAVDNL 249 (646)
T ss_dssp TCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHH-HHH-----------TTCCEEEEESSHHHHHHH
T ss_pred CCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHH-HHh-----------CCCeEEEEcCchHHHHHH
Confidence 568899999999987776 688999999999876444443 433 456799999998777655
No 82
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=97.81 E-value=3.3e-05 Score=64.84 Aligned_cols=61 Identities=23% Similarity=0.281 Sum_probs=45.3
Q ss_pred CChHHHHHHHHHHH----cCCCeEEEcCCCCchhHHhHHHHHHHHHhhcCCCCCCCCCCCcEEEEEcCcHHHHHH
Q psy7268 61 TPTEIQKYSIPTLL----SGKSAILVAETGCGKTLSFLAPLVQQILTWKSRPEYKPELNAPLALIITPGRELVFQ 131 (134)
Q Consensus 61 ~~t~iQ~~~i~~~~----~g~dvli~a~tGsGKT~~~~lpil~~~~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q 131 (134)
.+.+.|.+++..++ .|++.++..++|.|||+..+..+...+.... ....+|||+| .+|+.|
T Consensus 236 ~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~---------~~~~~LIV~P-~sll~q 300 (800)
T 3mwy_W 236 ELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARR---------QNGPHIIVVP-LSTMPA 300 (800)
T ss_dssp CCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHS---------CCSCEEEECC-TTTHHH
T ss_pred CcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcC---------CCCCEEEEEC-chHHHH
Confidence 67899999998665 7889999999999999987555544433322 3345899999 455554
No 83
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=97.76 E-value=8.8e-05 Score=60.72 Aligned_cols=64 Identities=22% Similarity=0.294 Sum_probs=49.2
Q ss_pred CCCChHHHHHHHHHHHcCCCeEEEcCCCCchhHHhHHHHHHHHHhhcCCCCCCCCCCCcEEEEEcCcHHHHHHhc
Q psy7268 59 LTTPTEIQKYSIPTLLSGKSAILVAETGCGKTLSFLAPLVQQILTWKSRPEYKPELNAPLALIITPGRELVFQIG 133 (134)
Q Consensus 59 ~~~~t~iQ~~~i~~~~~g~dvli~a~tGsGKT~~~~lpil~~~~~~~~~~~~~~~~~~~~~lil~Pt~~La~Qi~ 133 (134)
+..+++-|..++..++.+.-.+|.||+|||||.... .++..+... .+.++++++||..-+.++.
T Consensus 178 ~~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~-~~i~~l~~~----------~~~~ilv~a~tn~A~~~l~ 241 (624)
T 2gk6_A 178 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSA-TIVYHLARQ----------GNGPVLVCAPSNIAVDQLT 241 (624)
T ss_dssp SCCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHH-HHHHHHHTS----------SSCCEEEEESSHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHH-HHHHHHHHc----------CCCeEEEEeCcHHHHHHHH
Confidence 346789999999998887778999999999998753 344444321 3457999999998887763
No 84
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=97.65 E-value=0.00013 Score=61.56 Aligned_cols=63 Identities=16% Similarity=0.249 Sum_probs=48.2
Q ss_pred CCCChHHHHHHHHHHHcCCCeEEEcCCCCchhHHhHHHHHHHHHhhcCCCCCCCCCCCcEEEEEcCcHHHHHHh
Q psy7268 59 LTTPTEIQKYSIPTLLSGKSAILVAETGCGKTLSFLAPLVQQILTWKSRPEYKPELNAPLALIITPGRELVFQI 132 (134)
Q Consensus 59 ~~~~t~iQ~~~i~~~~~g~dvli~a~tGsGKT~~~~lpil~~~~~~~~~~~~~~~~~~~~~lil~Pt~~La~Qi 132 (134)
+..+++-|..++..++.+.-++|.||+|||||.... .++..+... .+.++++++||..-+.++
T Consensus 358 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~-~~i~~l~~~----------~~~~ILv~a~tn~A~d~l 420 (802)
T 2xzl_A 358 FAQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSA-TIVYHLSKI----------HKDRILVCAPSNVAVDHL 420 (802)
T ss_dssp SCCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHH-HHHHHHHHH----------HCCCEEEEESSHHHHHHH
T ss_pred cccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHH-HHHHHHHhC----------CCCeEEEEcCcHHHHHHH
Confidence 346789999999999887778999999999997753 334444331 245799999999888765
No 85
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=97.63 E-value=0.00015 Score=59.57 Aligned_cols=65 Identities=18% Similarity=0.237 Sum_probs=45.0
Q ss_pred CChHHHHHHHHHHH---------cCCCeEEEcCCCCchhHHhHHHHHHHHHhhcCCCCCCCCCCCcEEEEEcCcHHHHHH
Q psy7268 61 TPTEIQKYSIPTLL---------SGKSAILVAETGCGKTLSFLAPLVQQILTWKSRPEYKPELNAPLALIITPGRELVFQ 131 (134)
Q Consensus 61 ~~t~iQ~~~i~~~~---------~g~dvli~a~tGsGKT~~~~lpil~~~~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q 131 (134)
.+.|+|.+++..+. .++..|+..++|.|||+..+..+...+..... ......++|||+|+ +|+.|
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~-----~~p~~~~~LiV~P~-sll~q 128 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPD-----CKPEIDKVIVVSPS-SLVRN 128 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTT-----SSCSCSCEEEEECH-HHHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCcc-----ccCCCCcEEEEecH-HHHHH
Confidence 68899999998764 35678999999999999886555554432110 00123458999997 56555
No 86
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.56 E-value=0.00024 Score=57.83 Aligned_cols=60 Identities=13% Similarity=0.121 Sum_probs=48.4
Q ss_pred CChHHHHHHHHHHHcCCCeEEEcCCCCchhHHhHHHHHHHHHhhcCCCCCCCCCCCcEEEEEcCcHHHHHHh
Q psy7268 61 TPTEIQKYSIPTLLSGKSAILVAETGCGKTLSFLAPLVQQILTWKSRPEYKPELNAPLALIITPGRELVFQI 132 (134)
Q Consensus 61 ~~t~iQ~~~i~~~~~g~dvli~a~tGsGKT~~~~lpil~~~~~~~~~~~~~~~~~~~~~lil~Pt~~La~Qi 132 (134)
.+++-|+.++..++.++.+++.|++|+|||... ..++..+.. .+.++++++||...+..+
T Consensus 189 ~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i-~~l~~~l~~-----------~g~~Vl~~ApT~~Aa~~L 248 (574)
T 3e1s_A 189 GLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTT-KAVADLAES-----------LGLEVGLCAPTGKAARRL 248 (574)
T ss_dssp TCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHH-HHHHHHHHH-----------TTCCEEEEESSHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHH-HHHHHHHHh-----------cCCeEEEecCcHHHHHHh
Confidence 679999999999999999999999999999663 344444433 456799999999888765
No 87
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=97.56 E-value=0.00026 Score=59.70 Aligned_cols=62 Identities=23% Similarity=0.307 Sum_probs=48.4
Q ss_pred CCChHHHHHHHHHHHcCCCeEEEcCCCCchhHHhHHHHHHHHHhhcCCCCCCCCCCCcEEEEEcCcHHHHHHh
Q psy7268 60 TTPTEIQKYSIPTLLSGKSAILVAETGCGKTLSFLAPLVQQILTWKSRPEYKPELNAPLALIITPGRELVFQI 132 (134)
Q Consensus 60 ~~~t~iQ~~~i~~~~~g~dvli~a~tGsGKT~~~~lpil~~~~~~~~~~~~~~~~~~~~~lil~Pt~~La~Qi 132 (134)
..+++-|..++..++.+.-.++.||+|||||... ..++..+... .+.++++++||..-+.++
T Consensus 355 ~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti-~~~i~~l~~~----------~~~~ilv~a~tn~A~~~l 416 (800)
T 2wjy_A 355 PDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTS-ATIVYHLARQ----------GNGPVLVCAPSNIAVDQL 416 (800)
T ss_dssp CCCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHH-HHHHHHHHTT----------CSSCEEEEESSHHHHHHH
T ss_pred cCCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHH-HHHHHHHHHc----------CCCcEEEEcCcHHHHHHH
Confidence 4578999999999888777899999999999875 3444444431 345799999999887765
No 88
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.51 E-value=0.00027 Score=55.65 Aligned_cols=65 Identities=14% Similarity=0.153 Sum_probs=47.9
Q ss_pred CCCCCChHHHHHHHHHHHc----CC-CeEEEcCCCCchhHHhHHHHHHHHHhhcCCCCCCCCCCCcEEEEEcCcHHHHHH
Q psy7268 57 RGLTTPTEIQKYSIPTLLS----GK-SAILVAETGCGKTLSFLAPLVQQILTWKSRPEYKPELNAPLALIITPGRELVFQ 131 (134)
Q Consensus 57 ~g~~~~t~iQ~~~i~~~~~----g~-dvli~a~tGsGKT~~~~lpil~~~~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q 131 (134)
..|..+++-|+.++..++. ++ .+++.|+.|||||... ..++..+... ....+++++||...+..
T Consensus 21 ~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll-~~~~~~l~~~----------~~~~il~~a~T~~Aa~~ 89 (459)
T 3upu_A 21 MTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLT-KFIIEALIST----------GETGIILAAPTHAAKKI 89 (459)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHH-HHHHHHHHHT----------TCCCEEEEESSHHHHHH
T ss_pred CccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHH-HHHHHHHHhc----------CCceEEEecCcHHHHHH
Confidence 4788999999999987653 24 8999999999999544 4555555442 12368889999887764
Q ss_pred h
Q psy7268 132 I 132 (134)
Q Consensus 132 i 132 (134)
+
T Consensus 90 l 90 (459)
T 3upu_A 90 L 90 (459)
T ss_dssp H
T ss_pred H
Confidence 4
No 89
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=97.40 E-value=0.00035 Score=56.70 Aligned_cols=64 Identities=11% Similarity=0.142 Sum_probs=46.6
Q ss_pred CCChHHHHHHHHHHHcCCCeEEEcCCCCchhHHhHHHHHHHHHhhcCCCCCCCCCCCcEEEEEcCcHHHHHHhc
Q psy7268 60 TTPTEIQKYSIPTLLSGKSAILVAETGCGKTLSFLAPLVQQILTWKSRPEYKPELNAPLALIITPGRELVFQIG 133 (134)
Q Consensus 60 ~~~t~iQ~~~i~~~~~g~dvli~a~tGsGKT~~~~lpil~~~~~~~~~~~~~~~~~~~~~lil~Pt~~La~Qi~ 133 (134)
..+++-|.+++. ..+..++|.|+.|||||.+.+--+...+..... ...+++++++|+..+..+.
T Consensus 8 ~~Ln~~Q~~av~--~~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~--------~~~~iL~ltft~~aa~e~~ 71 (647)
T 3lfu_A 8 DSLNDKQREAVA--APRSNLLVLAGAGSGKTRVLVHRIAWLMSVENC--------SPYSIMAVTFTNKAAAEMR 71 (647)
T ss_dssp TTCCHHHHHHHT--CCSSCEEEEECTTSCHHHHHHHHHHHHHHTSCC--------CGGGEEEEESSHHHHHHHH
T ss_pred hcCCHHHHHHHh--CCCCCEEEEECCCCCHHHHHHHHHHHHHHhCCC--------ChhhEEEEeccHHHHHHHH
Confidence 467999999996 235679999999999998775555554432110 2347999999999887763
No 90
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=97.21 E-value=0.0005 Score=56.75 Aligned_cols=60 Identities=28% Similarity=0.500 Sum_probs=45.4
Q ss_pred CCCCChHHHHHHHHHHH----cCC-CeEEEcCCCCchhHHhHHHHHHHHHhhcCCCCCCCCCCCcEEEEEcCcHHHHHHh
Q psy7268 58 GLTTPTEIQKYSIPTLL----SGK-SAILVAETGCGKTLSFLAPLVQQILTWKSRPEYKPELNAPLALIITPGRELVFQI 132 (134)
Q Consensus 58 g~~~~t~iQ~~~i~~~~----~g~-dvli~a~tGsGKT~~~~lpil~~~~~~~~~~~~~~~~~~~~~lil~Pt~~La~Qi 132 (134)
+| .|++.|..++..+. .|. ..++.+.||||||+.+.- ++... +. .+|||+|++.+|.|+
T Consensus 6 ~~-~~~~~q~~ai~~l~~~~~~~~~~~~l~g~tgs~kt~~~a~-~~~~~-------------~~-~~lvv~~~~~~A~ql 69 (664)
T 1c4o_A 6 GP-SPKGDQPKAIAGLVEALRDGERFVTLLGATGTGKTVTMAK-VIEAL-------------GR-PALVLAPNKILAAQL 69 (664)
T ss_dssp SC-CCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHH-HHHHH-------------TC-CEEEEESSHHHHHHH
T ss_pred CC-CCCCCChHHHHHHHHHHhcCCCcEEEEcCCCcHHHHHHHH-HHHHh-------------CC-CEEEEecCHHHHHHH
Confidence 67 89999999988655 343 467889999999987632 33333 11 389999999999998
Q ss_pred c
Q psy7268 133 G 133 (134)
Q Consensus 133 ~ 133 (134)
+
T Consensus 70 ~ 70 (664)
T 1c4o_A 70 A 70 (664)
T ss_dssp H
T ss_pred H
Confidence 6
No 91
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=96.93 E-value=0.0014 Score=53.73 Aligned_cols=63 Identities=14% Similarity=0.085 Sum_probs=46.1
Q ss_pred CChHHHHHHHHHHHcCCCeEEEcCCCCchhHHhHHHHHHHHHhhcCCCCCCCCCCCcEEEEEcCcHHHHHHhc
Q psy7268 61 TPTEIQKYSIPTLLSGKSAILVAETGCGKTLSFLAPLVQQILTWKSRPEYKPELNAPLALIITPGRELVFQIG 133 (134)
Q Consensus 61 ~~t~iQ~~~i~~~~~g~dvli~a~tGsGKT~~~~lpil~~~~~~~~~~~~~~~~~~~~~lil~Pt~~La~Qi~ 133 (134)
.+++-|++++.. .+..++|.|+.|||||.+..-=+...+..... ...++++++.|+..|..+.
T Consensus 2 ~L~~~Q~~av~~--~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~--------~~~~IL~lTfT~~Aa~em~ 64 (673)
T 1uaa_A 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGY--------QARHIAAVTFTNKAAREMK 64 (673)
T ss_dssp CCCHHHHHHHHC--CSSEEEECCCTTSCHHHHHHHHHHHHHHHHCC--------CGGGEEEEESSHHHHHHHH
T ss_pred CCCHHHHHHHhC--CCCCEEEEeCCCCChHHHHHHHHHHHHHhcCC--------CHHHeEEEeccHHHHHHHH
Confidence 468999999864 36679999999999998875555555543211 2346999999999887653
No 92
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=96.77 E-value=0.0034 Score=52.14 Aligned_cols=63 Identities=16% Similarity=0.116 Sum_probs=46.0
Q ss_pred CCChHHHHHHHHHHHcCCCeEEEcCCCCchhHHhHHHHHHHHHhhcCCCCCCCCCCCcEEEEEcCcHHHHHHh
Q psy7268 60 TTPTEIQKYSIPTLLSGKSAILVAETGCGKTLSFLAPLVQQILTWKSRPEYKPELNAPLALIITPGRELVFQI 132 (134)
Q Consensus 60 ~~~t~iQ~~~i~~~~~g~dvli~a~tGsGKT~~~~lpil~~~~~~~~~~~~~~~~~~~~~lil~Pt~~La~Qi 132 (134)
..+++-|++++.. .+..++|.|..|||||.+..-=+...+..... ...++++++.|+..|..+
T Consensus 10 ~~Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~--------~p~~IL~vTFTnkAA~Em 72 (724)
T 1pjr_A 10 AHLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHV--------APWNILAITFTNKAAREM 72 (724)
T ss_dssp TTSCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCC--------CGGGEEEEESSHHHHHHH
T ss_pred hhCCHHHHHHHhC--CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcCC--------CHHHeEEEeccHHHHHHH
Confidence 4689999998864 35679999999999998876555555543211 234699999999777654
No 93
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=96.58 E-value=0.0036 Score=54.98 Aligned_cols=65 Identities=20% Similarity=0.263 Sum_probs=48.3
Q ss_pred CChHHHHHHHHHHHcCCCeEEEcCCCCchhHHhHHHHHHHHHhhcCCCCCCCCCCCcEEEEEcCcHHHHHHhc
Q psy7268 61 TPTEIQKYSIPTLLSGKSAILVAETGCGKTLSFLAPLVQQILTWKSRPEYKPELNAPLALIITPGRELVFQIG 133 (134)
Q Consensus 61 ~~t~iQ~~~i~~~~~g~dvli~a~tGsGKT~~~~lpil~~~~~~~~~~~~~~~~~~~~~lil~Pt~~La~Qi~ 133 (134)
.+|+-|.++|..- +.+++|.|..|||||.+.+-=++..+.... .....-+++++++|+..|..+.
T Consensus 10 ~~t~eQ~~~i~~~--~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~------~~~~~~~il~~Tft~~aa~e~~ 74 (1232)
T 3u4q_A 10 TWTDDQWNAIVST--GQDILVAAAAGSGKTAVLVERMIRKITAEE------NPIDVDRLLVVTFTNASAAEMK 74 (1232)
T ss_dssp CCCHHHHHHHHCC--SSCEEEEECTTCCHHHHHHHHHHHHHSCSS------SCCCGGGEEEECSSHHHHHHHH
T ss_pred CCCHHHHHHHhCC--CCCEEEEecCCCcHHHHHHHHHHHHHhcCC------CCCCccceEEEeccHHHHHHHH
Confidence 6799999998643 889999999999999887666666664321 0113347999999988887653
No 94
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=95.60 E-value=0.015 Score=39.45 Aligned_cols=19 Identities=37% Similarity=0.482 Sum_probs=16.4
Q ss_pred cCCCeEEEcCCCCchhHHh
Q psy7268 75 SGKSAILVAETGCGKTLSF 93 (134)
Q Consensus 75 ~g~dvli~a~tGsGKT~~~ 93 (134)
.|+.+++.||+|+|||...
T Consensus 37 ~g~~~~l~G~~G~GKTtL~ 55 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLA 55 (180)
T ss_dssp GCCEEEECCSSSSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4788999999999999664
No 95
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=95.45 E-value=0.037 Score=45.57 Aligned_cols=58 Identities=31% Similarity=0.461 Sum_probs=42.4
Q ss_pred CChHHHHHHHHHHH----cCC-CeEEEcCCCCchhHHhHHHHHHHHHhhcCCCCCCCCCCCcEEEEEcCcHHHHHHhc
Q psy7268 61 TPTEIQKYSIPTLL----SGK-SAILVAETGCGKTLSFLAPLVQQILTWKSRPEYKPELNAPLALIITPGRELVFQIG 133 (134)
Q Consensus 61 ~~t~iQ~~~i~~~~----~g~-dvli~a~tGsGKT~~~~lpil~~~~~~~~~~~~~~~~~~~~~lil~Pt~~La~Qi~ 133 (134)
.|+.-|..++..+. .|. ...+.+.||+|||+...- ++... +. ..|||+|++.+|.|++
T Consensus 12 ~p~~~Q~~~i~~l~~~~~~~~~~~~l~g~~gs~k~~~~a~-~~~~~-------------~~-~~lvv~~~~~~A~~l~ 74 (661)
T 2d7d_A 12 QPQGDQPKAIEKLVKGIQEGKKHQTLLGATGTGKTFTVSN-LIKEV-------------NK-PTLVIAHNKTLAGQLY 74 (661)
T ss_dssp CCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHH-HHHHH-------------CC-CEEEECSSHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHhcCCCcEEEECcCCcHHHHHHHH-HHHHh-------------CC-CEEEEECCHHHHHHHH
Confidence 78888988887554 343 467889999999976532 33332 12 3899999999999986
No 96
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.43 E-value=0.0099 Score=46.82 Aligned_cols=57 Identities=19% Similarity=0.289 Sum_probs=38.0
Q ss_pred cCCCCCCcccCCCCHHHHHHHHHC---CCCCChHHHHHHHHHHHcCCCeEEEcCCCCchhHHh
Q psy7268 34 SRIDLGTFEDTGLAPEIIDIFTKR---GLTTPTEIQKYSIPTLLSGKSAILVAETGCGKTLSF 93 (134)
Q Consensus 34 ~~~~~~~f~~~~l~~~i~~~l~~~---g~~~~t~iQ~~~i~~~~~g~dvli~a~tGsGKT~~~ 93 (134)
...|-.+|++.+-.++..+.|.+. -+.+|.-++..- +.-.+.+++.||+|+|||+..
T Consensus 173 ~~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g---~~~prGvLLyGPPGTGKTllA 232 (434)
T 4b4t_M 173 DEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMG---IRAPKGALMYGPPGTGKTLLA 232 (434)
T ss_dssp ESSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHC---CCCCCEEEEESCTTSSHHHHH
T ss_pred CCCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCCeeEEECcCCCCHHHHH
Confidence 345667999999999888888763 122232222211 112467999999999999764
No 97
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=95.41 E-value=0.058 Score=43.77 Aligned_cols=63 Identities=11% Similarity=0.019 Sum_probs=48.6
Q ss_pred CChHHHHHHHHHHHcCCCeEEEcCCCCchhHHhHHHHHHHHHhhcCCCCCCCCCCCcEEEEEcCcHHHHHHhc
Q psy7268 61 TPTEIQKYSIPTLLSGKSAILVAETGCGKTLSFLAPLVQQILTWKSRPEYKPELNAPLALIITPGRELVFQIG 133 (134)
Q Consensus 61 ~~t~iQ~~~i~~~~~g~dvli~a~tGsGKT~~~~lpil~~~~~~~~~~~~~~~~~~~~~lil~Pt~~La~Qi~ 133 (134)
.+++.|...+..+-..+.+++..+-|+|||.....-++..+... .+..+++++|+++.|..+.
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~----------~~~~i~~va~t~~qA~~~~ 225 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFN----------KDKAVGILAHKGSMSAEVL 225 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHTS----------SSCEEEEEESSHHHHHHHH
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHhC----------CCCeEEEEECCHHHHHHHH
Confidence 57999999998775567789999999999998765555444331 3457999999999987753
No 98
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=95.21 E-value=0.019 Score=37.74 Aligned_cols=21 Identities=14% Similarity=0.047 Sum_probs=17.4
Q ss_pred HHcCCCeEEEcCCCCchhHHh
Q psy7268 73 LLSGKSAILVAETGCGKTLSF 93 (134)
Q Consensus 73 ~~~g~dvli~a~tGsGKT~~~ 93 (134)
...+.++++.|++|+|||...
T Consensus 24 ~~~~~~vll~G~~GtGKt~lA 44 (143)
T 3co5_A 24 AKRTSPVFLTGEAGSPFETVA 44 (143)
T ss_dssp HTCSSCEEEEEETTCCHHHHH
T ss_pred hCCCCcEEEECCCCccHHHHH
Confidence 346778999999999999654
No 99
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=95.19 E-value=0.08 Score=40.99 Aligned_cols=62 Identities=11% Similarity=0.043 Sum_probs=48.1
Q ss_pred CChHHHHHHHHHHHcCCCeEEEcCCCCchhHHhHHHHHHHHHhhcCCCCCCCCCCCcEEEEEcCcHHHHHHh
Q psy7268 61 TPTEIQKYSIPTLLSGKSAILVAETGCGKTLSFLAPLVQQILTWKSRPEYKPELNAPLALIITPGRELVFQI 132 (134)
Q Consensus 61 ~~t~iQ~~~i~~~~~g~dvli~a~tGsGKT~~~~lpil~~~~~~~~~~~~~~~~~~~~~lil~Pt~~La~Qi 132 (134)
.++|.|...+..+...+-+++..+-+.|||.....-++...... .+..+++++|+++.|..+
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~----------~g~~v~~vA~t~~qA~~v 224 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFN----------KDKAVGILAHKGSMSAEV 224 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHSS----------SSCEEEEEESSHHHHHHH
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHhC----------CCCeEEEEeCCHHHHHHH
Confidence 78999999998765556688999999999998766555544321 456799999999988755
No 100
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=95.07 E-value=0.024 Score=37.27 Aligned_cols=20 Identities=15% Similarity=0.189 Sum_probs=17.2
Q ss_pred HcCCCeEEEcCCCCchhHHh
Q psy7268 74 LSGKSAILVAETGCGKTLSF 93 (134)
Q Consensus 74 ~~g~dvli~a~tGsGKT~~~ 93 (134)
..+.++++.|++|+|||...
T Consensus 22 ~~~~~vll~G~~GtGKt~lA 41 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGA 41 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHH
Confidence 46778999999999999765
No 101
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.01 E-value=0.015 Score=45.36 Aligned_cols=57 Identities=21% Similarity=0.284 Sum_probs=36.7
Q ss_pred cCCCCCCcccCCCCHHHHHHHHHC---CCCCChHHHHHHHHHHHcCCCeEEEcCCCCchhHHh
Q psy7268 34 SRIDLGTFEDTGLAPEIIDIFTKR---GLTTPTEIQKYSIPTLLSGKSAILVAETGCGKTLSF 93 (134)
Q Consensus 34 ~~~~~~~f~~~~l~~~i~~~l~~~---g~~~~t~iQ~~~i~~~~~g~dvli~a~tGsGKT~~~ 93 (134)
...|-.+|++.+=-++..+.|++. -+++|--.+..- +.--+.+++.||+|+|||+..
T Consensus 140 ~~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~g---i~~prGvLL~GPPGTGKTllA 199 (405)
T 4b4t_J 140 EKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLG---IAQPKGVILYGPPGTGKTLLA 199 (405)
T ss_dssp ECSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHT---CCCCCCEEEESCSSSSHHHHH
T ss_pred cCCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCCceEEeCCCCCCHHHHH
Confidence 334556899999888888888773 111221111110 112468999999999999764
No 102
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=94.69 E-value=0.053 Score=41.94 Aligned_cols=44 Identities=18% Similarity=0.316 Sum_probs=30.4
Q ss_pred cCCCeEEEcCCCCchhHHhHHHHHHHHHhhcCCCCCCCCCCCcEEEEEcCcHHHHH
Q psy7268 75 SGKSAILVAETGCGKTLSFLAPLVQQILTWKSRPEYKPELNAPLALIITPGRELVF 130 (134)
Q Consensus 75 ~g~dvli~a~tGsGKT~~~~lpil~~~~~~~~~~~~~~~~~~~~~lil~Pt~~La~ 130 (134)
...++++.|+||+|||... -.++..+.. .+..++|+=|..++..
T Consensus 52 ~~~h~~i~G~tGsGKs~~~-~~li~~~~~-----------~g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLL-RELAYTGLL-----------RGDRMVIVDPNGDMLS 95 (437)
T ss_dssp GGGCEEEEECTTSSHHHHH-HHHHHHHHH-----------TTCEEEEEEETTHHHH
T ss_pred CcceEEEECCCCCCHHHHH-HHHHHHHHH-----------CCCcEEEEeCCCchhH
Confidence 4568999999999999874 445555543 3455677667666643
No 103
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=94.27 E-value=0.081 Score=39.03 Aligned_cols=44 Identities=20% Similarity=0.102 Sum_probs=31.7
Q ss_pred HHHHHHHHHCCCCCChHHHHHH-HHHHHcCC-----CeEEEcCCCCchhHHhH
Q psy7268 48 PEIIDIFTKRGLTTPTEIQKYS-IPTLLSGK-----SAILVAETGCGKTLSFL 94 (134)
Q Consensus 48 ~~i~~~l~~~g~~~~t~iQ~~~-i~~~~~g~-----dvli~a~tGsGKT~~~~ 94 (134)
..+.+.|+..|| .+++... +...+.|+ .+++.||+|+|||+.+.
T Consensus 73 n~i~~~l~~qg~---~~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 73 NRIYKILELNGY---DPQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp CHHHHHHHHTTC---CHHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHHcCC---CHHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHH
Confidence 478888888888 3554333 34555544 49999999999998774
No 104
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=94.06 E-value=0.021 Score=41.38 Aligned_cols=56 Identities=20% Similarity=0.135 Sum_probs=34.9
Q ss_pred CCCCCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHH--HHcCCCeEEEcCCCCchhHHh
Q psy7268 36 IDLGTFEDTGLAPEIIDIFTKRGLTTPTEIQKYSIPT--LLSGKSAILVAETGCGKTLSF 93 (134)
Q Consensus 36 ~~~~~f~~~~l~~~i~~~l~~~g~~~~t~iQ~~~i~~--~~~g~dvli~a~tGsGKT~~~ 93 (134)
.+-.+|+++.-.+...+.|.+.=- .+. .....+.. +..++.+++.||+|+|||...
T Consensus 11 ~~~~~~~~i~G~~~~~~~l~~~~~-~~~-~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 11 RPNVRYEDIGGLEKQMQEIREVVE-LPL-KHPELFEKVGIEPPKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp SCCCCGGGSCSCHHHHHHHHHHTH-HHH-HCHHHHHHHCCCCCSEEEEESSSSSSHHHHH
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHH-HHh-hCHHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 344578998888888888876310 100 01112222 134667999999999999664
No 105
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.05 E-value=0.024 Score=44.71 Aligned_cols=55 Identities=27% Similarity=0.283 Sum_probs=34.8
Q ss_pred CCCCCcccCCCCHHHHHHHHHC---CCCCChHHHHHHHHHHHcCCCeEEEcCCCCchhHHh
Q psy7268 36 IDLGTFEDTGLAPEIIDIFTKR---GLTTPTEIQKYSIPTLLSGKSAILVAETGCGKTLSF 93 (134)
Q Consensus 36 ~~~~~f~~~~l~~~i~~~l~~~---g~~~~t~iQ~~~i~~~~~g~dvli~a~tGsGKT~~~ 93 (134)
.|-.+|++.+--++..+.|.+. -+++|--.+.. .+.--+.+++.||+|+|||+..
T Consensus 175 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~---g~~~prGvLL~GPPGtGKTllA 232 (437)
T 4b4t_L 175 QGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRV---GIKPPKGVLLYGPPGTGKTLLA 232 (437)
T ss_dssp SCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHH---CCCCCCEEEEESCTTSSHHHHH
T ss_pred CCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhC---CCCCCCeEEEECCCCCcHHHHH
Confidence 4556899999888888877763 11111111111 0112467999999999999775
No 106
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=94.05 E-value=0.11 Score=39.17 Aligned_cols=19 Identities=37% Similarity=0.536 Sum_probs=16.1
Q ss_pred cCCCeEEEcCCCCchhHHh
Q psy7268 75 SGKSAILVAETGCGKTLSF 93 (134)
Q Consensus 75 ~g~dvli~a~tGsGKT~~~ 93 (134)
.+..+++.||+|+|||...
T Consensus 50 ~~~~vll~GppGtGKT~la 68 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLA 68 (363)
T ss_dssp CCCCEEEECCTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 3567999999999999764
No 107
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=93.99 E-value=0.21 Score=34.08 Aligned_cols=24 Identities=29% Similarity=0.443 Sum_probs=18.0
Q ss_pred CCeEEEcCCCCchhHHhHHHHHHHH
Q psy7268 77 KSAILVAETGCGKTLSFLAPLVQQI 101 (134)
Q Consensus 77 ~dvli~a~tGsGKT~~~~lpil~~~ 101 (134)
+.+++.||+|+|||... -.+...+
T Consensus 55 ~~~~l~G~~GtGKT~la-~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLL-AAIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHH-HHHHHHH
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHH
Confidence 68999999999999754 3444444
No 108
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=93.98 E-value=0.14 Score=36.58 Aligned_cols=52 Identities=12% Similarity=0.212 Sum_probs=35.1
Q ss_pred HHHHHHHHHCCCCCChHHHHHHHHHHHcC----CCeEEEcCCCCchhHHhHHHHHHHHH
Q psy7268 48 PEIIDIFTKRGLTTPTEIQKYSIPTLLSG----KSAILVAETGCGKTLSFLAPLVQQIL 102 (134)
Q Consensus 48 ~~i~~~l~~~g~~~~t~iQ~~~i~~~~~g----~dvli~a~tGsGKT~~~~lpil~~~~ 102 (134)
..|.+.|+-.|+ .+... -..+..++.+ +.+++.||+|+|||..+ ..++..+.
T Consensus 28 ~~I~~~l~yq~~-~~~~f-~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a-~ala~~l~ 83 (212)
T 1tue_A 28 RPIVQFLRYQQI-EFITF-LGALKSFLKGTPKKNCLVFCGPANTGKSYFG-MSFIHFIQ 83 (212)
T ss_dssp HHHHHHHHHTTC-CHHHH-HHHHHHHHHTCTTCSEEEEESCGGGCHHHHH-HHHHHHHT
T ss_pred HHHHHHHHHcCc-CHHHH-HHHHHHHHhcCCcccEEEEECCCCCCHHHHH-HHHHHHhC
Confidence 577777877666 44454 4445555544 35999999999999655 55666553
No 109
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=93.96 E-value=0.11 Score=41.63 Aligned_cols=41 Identities=24% Similarity=0.154 Sum_probs=26.3
Q ss_pred HHHHHHCCCCCChHHHHHHH-HHHHcCCCeEEEcCCCCchhHHh
Q psy7268 51 IDIFTKRGLTTPTEIQKYSI-PTLLSGKSAILVAETGCGKTLSF 93 (134)
Q Consensus 51 ~~~l~~~g~~~~t~iQ~~~i-~~~~~g~dvli~a~tGsGKT~~~ 93 (134)
+..+.+.|. +++.+..-+ -.+..|..+++.||||||||...
T Consensus 236 ~~~l~~~G~--~~~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL 277 (511)
T 2oap_1 236 PIDLIEKGT--VPSGVLAYLWLAIEHKFSAIVVGETASGKTTTL 277 (511)
T ss_dssp HHHHHHTTS--SCHHHHHHHHHHHHTTCCEEEEESTTSSHHHHH
T ss_pred hhhHHhcCC--CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHHH
Confidence 445566663 233333333 24567889999999999999653
No 110
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.95 E-value=0.043 Score=43.23 Aligned_cols=57 Identities=25% Similarity=0.311 Sum_probs=36.7
Q ss_pred cCCCCCCcccCCCCHHHHHHHHHC---CCCCChHHHHHHHHHHHcCCCeEEEcCCCCchhHHh
Q psy7268 34 SRIDLGTFEDTGLAPEIIDIFTKR---GLTTPTEIQKYSIPTLLSGKSAILVAETGCGKTLSF 93 (134)
Q Consensus 34 ~~~~~~~f~~~~l~~~i~~~l~~~---g~~~~t~iQ~~~i~~~~~g~dvli~a~tGsGKT~~~ 93 (134)
...|-.+|++.+=-++..+.|.+. -+++|--.+..- +--.+.+++.||+|+|||+..
T Consensus 174 ~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~G---i~~prGvLLyGPPGTGKTlLA 233 (437)
T 4b4t_I 174 DKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMG---IKPPKGVILYGAPGTGKTLLA 233 (437)
T ss_dssp ESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHT---CCCCSEEEEESSTTTTHHHHH
T ss_pred ccCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCCCCceECCCCchHHHHH
Confidence 345556999999778888888763 122222222111 112467999999999999764
No 111
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.94 E-value=0.031 Score=44.46 Aligned_cols=55 Identities=24% Similarity=0.290 Sum_probs=35.7
Q ss_pred CCCCCcccCCCCHHHHHHHHHC---CCCCChHHHHHHHHHHHcCCCeEEEcCCCCchhHHh
Q psy7268 36 IDLGTFEDTGLAPEIIDIFTKR---GLTTPTEIQKYSIPTLLSGKSAILVAETGCGKTLSF 93 (134)
Q Consensus 36 ~~~~~f~~~~l~~~i~~~l~~~---g~~~~t~iQ~~~i~~~~~g~dvli~a~tGsGKT~~~ 93 (134)
.|--+|++.+--++..+.|++. -+.+|-..+.. -+.--+.+++.||+|+|||+..
T Consensus 203 ~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~---Gi~pprGILLyGPPGTGKTlLA 260 (467)
T 4b4t_H 203 KPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATL---GIDPPKGILLYGPPGTGKTLCA 260 (467)
T ss_dssp SCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHH---TCCCCSEEEECSCTTSSHHHHH
T ss_pred CCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHC---CCCCCCceEeeCCCCCcHHHHH
Confidence 4446899999888888888773 11111111111 0123467999999999999764
No 112
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=93.90 E-value=0.099 Score=41.79 Aligned_cols=44 Identities=25% Similarity=0.369 Sum_probs=29.2
Q ss_pred HHHHHHHHCCCCCChHHHHHHHHHHHcCCCeEEEcCCCCchhHHh
Q psy7268 49 EIIDIFTKRGLTTPTEIQKYSIPTLLSGKSAILVAETGCGKTLSF 93 (134)
Q Consensus 49 ~i~~~l~~~g~~~~t~iQ~~~i~~~~~g~dvli~a~tGsGKT~~~ 93 (134)
.+.+.+.+ ++-.-..+=..+.-.+..|.++++.||+|+|||...
T Consensus 15 ~l~~~l~~-~ivGq~~~i~~l~~al~~~~~VLL~GpPGtGKT~LA 58 (500)
T 3nbx_X 15 RLSSSLEK-GLYERSHAIRLCLLAALSGESVFLLGPPGIAKSLIA 58 (500)
T ss_dssp HHHHHHHT-TCSSCHHHHHHHHHHHHHTCEEEEECCSSSSHHHHH
T ss_pred HHHHHHHh-hhHHHHHHHHHHHHHHhcCCeeEeecCchHHHHHHH
Confidence 34444443 343334444555556778999999999999999754
No 113
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=93.80 E-value=0.034 Score=39.56 Aligned_cols=52 Identities=27% Similarity=0.293 Sum_probs=29.7
Q ss_pred CCcccCCCCHHHHHHHHHC--CCCCChHHHHHHHHHHHcCCCeEEEcCCCCchhHHh
Q psy7268 39 GTFEDTGLAPEIIDIFTKR--GLTTPTEIQKYSIPTLLSGKSAILVAETGCGKTLSF 93 (134)
Q Consensus 39 ~~f~~~~l~~~i~~~l~~~--g~~~~t~iQ~~~i~~~~~g~dvli~a~tGsGKT~~~ 93 (134)
.+|+++.-.+...+.+.+. .+..+...... .+...+.+++.||+|+|||...
T Consensus 3 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~---g~~~~~~vll~G~~GtGKT~la 56 (262)
T 2qz4_A 3 VSFKDVAGMHEAKLEVREFVDYLKSPERFLQL---GAKVPKGALLLGPPGCGKTLLA 56 (262)
T ss_dssp CCTTSSCSCHHHHHHHHHHHHHHHCCC---------CCCCCEEEEESCTTSSHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHCHHHHHHc---CCCCCceEEEECCCCCCHHHHH
Confidence 3677777777777777652 01111111110 1123467999999999999764
No 114
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=93.66 E-value=0.02 Score=42.32 Aligned_cols=56 Identities=23% Similarity=0.326 Sum_probs=33.6
Q ss_pred CCCCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHH-HHcCCCeEEEcCCCCchhHHh
Q psy7268 37 DLGTFEDTGLAPEIIDIFTKRGLTTPTEIQKYSIPT-LLSGKSAILVAETGCGKTLSF 93 (134)
Q Consensus 37 ~~~~f~~~~l~~~i~~~l~~~g~~~~t~iQ~~~i~~-~~~g~dvli~a~tGsGKT~~~ 93 (134)
+-.+|+++.-.+...+.|.+. ...|.......... +..++.+++.||+|+|||...
T Consensus 10 ~~~~~~di~G~~~~~~~l~~~-v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la 66 (301)
T 3cf0_A 10 PQVTWEDIGGLEDVKRELQEL-VQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLA 66 (301)
T ss_dssp CCCCGGGSCSCHHHHHHHHHH-HHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHH-HHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHH
Confidence 445788988888888777763 10000000000011 124667999999999999764
No 115
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=93.30 E-value=0.061 Score=42.50 Aligned_cols=38 Identities=29% Similarity=0.524 Sum_probs=27.3
Q ss_pred eEEEcCCCCchhHHhHHHHHHHHHhhcCCCCCCCCCCCcEEEEEcCcHHHHHHhc
Q psy7268 79 AILVAETGCGKTLSFLAPLVQQILTWKSRPEYKPELNAPLALIITPGRELVFQIG 133 (134)
Q Consensus 79 vli~a~tGsGKT~~~~lpil~~~~~~~~~~~~~~~~~~~~~lil~Pt~~La~Qi~ 133 (134)
.++.|+.|+|||... .+.+ . ....+|++||++++..+.
T Consensus 164 ~~I~G~aGsGKTt~I----~~~~-~------------~~~~lVlTpT~~aa~~l~ 201 (446)
T 3vkw_A 164 VLVDGVPGCGKTKEI----LSRV-N------------FEEDLILVPGRQAAEMIR 201 (446)
T ss_dssp EEEEECTTSCHHHHH----HHHC-C------------TTTCEEEESCHHHHHHHH
T ss_pred EEEEcCCCCCHHHHH----HHHh-c------------cCCeEEEeCCHHHHHHHH
Confidence 678999999999654 2222 1 123699999999998763
No 116
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.29 E-value=0.053 Score=42.57 Aligned_cols=55 Identities=16% Similarity=0.138 Sum_probs=34.3
Q ss_pred CCCCCcccCCCCHHHHHHHHHC---CCCCChHHHHHHHHHHHcCCCeEEEcCCCCchhHHh
Q psy7268 36 IDLGTFEDTGLAPEIIDIFTKR---GLTTPTEIQKYSIPTLLSGKSAILVAETGCGKTLSF 93 (134)
Q Consensus 36 ~~~~~f~~~~l~~~i~~~l~~~---g~~~~t~iQ~~~i~~~~~g~dvli~a~tGsGKT~~~ 93 (134)
.|-.+|++.+--++..+.|.+. -+.+|--.+.. -+.-.+.+++.||+|+|||+..
T Consensus 166 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~---g~~~prGiLL~GPPGtGKT~la 223 (428)
T 4b4t_K 166 KPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQI---GIDPPRGVLLYGPPGTGKTMLV 223 (428)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHH---CCCCCCEEEEESCTTTTHHHHH
T ss_pred CCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhC---CCCCCceEEEECCCCCCHHHHH
Confidence 4456899998888888877762 11111111110 0112456999999999999765
No 117
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=93.20 E-value=0.12 Score=38.52 Aligned_cols=50 Identities=16% Similarity=0.234 Sum_probs=32.0
Q ss_pred CCCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHc-----CCCeEEEcCCCCchhHHh
Q psy7268 38 LGTFEDTGLAPEIIDIFTKRGLTTPTEIQKYSIPTLLS-----GKSAILVAETGCGKTLSF 93 (134)
Q Consensus 38 ~~~f~~~~l~~~i~~~l~~~g~~~~t~iQ~~~i~~~~~-----g~dvli~a~tGsGKT~~~ 93 (134)
-.+|++++-.+...+.|.+.=. .|.. .|.++. .+.+++.||+|+|||...
T Consensus 8 ~~~~~di~G~~~~k~~l~~~v~---~p~~---~~~~~~~~~~~~~~iLL~GppGtGKT~la 62 (322)
T 1xwi_A 8 NVKWSDVAGLEGAKEALKEAVI---LPIK---FPHLFTGKRTPWRGILLFGPPGTGKSYLA 62 (322)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHH---HHHH---CGGGSCTTCCCCSEEEEESSSSSCHHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHHH---HHHh---CHHHHhCCCCCCceEEEECCCCccHHHHH
Confidence 3589998888888887765200 0100 012222 357999999999999764
No 118
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=93.09 E-value=0.022 Score=40.76 Aligned_cols=53 Identities=25% Similarity=0.179 Sum_probs=32.8
Q ss_pred CCCCCcccCCCCHHHHHHHHHCC--CCCChHHHHHHHHHHH--cCCCeEEEcCCCCchhHHh
Q psy7268 36 IDLGTFEDTGLAPEIIDIFTKRG--LTTPTEIQKYSIPTLL--SGKSAILVAETGCGKTLSF 93 (134)
Q Consensus 36 ~~~~~f~~~~l~~~i~~~l~~~g--~~~~t~iQ~~~i~~~~--~g~dvli~a~tGsGKT~~~ 93 (134)
.+-.+|+++.-.+.....+++.- |.. ...+..+- -.+.+++.||+|+|||...
T Consensus 10 ~~~~~~~~i~g~~~~~~~l~~l~~~~~~-----~~~~~~~~~~~~~g~ll~G~~G~GKTtl~ 66 (254)
T 1ixz_A 10 APKVTFKDVAGAEEAKEELKEIVEFLKN-----PSRFHEMGARIPKGVLLVGPPGVGKTHLA 66 (254)
T ss_dssp CCSCCGGGCCSCHHHHHHHHHHHHHHHC-----HHHHHHTTCCCCSEEEEECCTTSSHHHHH
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHHHHC-----HHHHHHcCCCCCCeEEEECCCCCCHHHHH
Confidence 34468888887787777776531 111 12222221 1234999999999999654
No 119
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=93.08 E-value=0.11 Score=36.54 Aligned_cols=35 Identities=20% Similarity=0.143 Sum_probs=27.6
Q ss_pred CCCChHHHHHHHHHHHcCCCeEEEcCCCCchhHHh
Q psy7268 59 LTTPTEIQKYSIPTLLSGKSAILVAETGCGKTLSF 93 (134)
Q Consensus 59 ~~~~t~iQ~~~i~~~~~g~dvli~a~tGsGKT~~~ 93 (134)
++.-+--|..++..+..|.-+.+.+|+|+|||..+
T Consensus 5 i~pk~~g~~~~l~~i~~Ge~~~liG~nGsGKSTLl 39 (208)
T 3b85_A 5 IRPKTLGQKHYVDAIDTNTIVFGLGPAGSGKTYLA 39 (208)
T ss_dssp CCCCSHHHHHHHHHHHHCSEEEEECCTTSSTTHHH
T ss_pred cccCCHhHHHHHHhccCCCEEEEECCCCCCHHHHH
Confidence 33345567778888888999999999999999764
No 120
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=93.03 E-value=0.26 Score=36.66 Aligned_cols=26 Identities=23% Similarity=0.413 Sum_probs=19.1
Q ss_pred CCCeEEEcCCCCchhHHhHHHHHHHHH
Q psy7268 76 GKSAILVAETGCGKTLSFLAPLVQQIL 102 (134)
Q Consensus 76 g~dvli~a~tGsGKT~~~~lpil~~~~ 102 (134)
++++++.||+|+|||... ..+...+.
T Consensus 152 ~~~lll~G~~GtGKT~La-~aia~~~~ 177 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLL-AAMAHELS 177 (308)
T ss_dssp CCEEEEECSTTSSHHHHH-HHHHHHHH
T ss_pred CceEEEECCCCCCHHHHH-HHHHHHHH
Confidence 578999999999999664 34444443
No 121
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=92.84 E-value=0.2 Score=37.18 Aligned_cols=52 Identities=15% Similarity=0.202 Sum_probs=33.8
Q ss_pred CCCCCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHH-----cCCCeEEEcCCCCchhHHh
Q psy7268 36 IDLGTFEDTGLAPEIIDIFTKRGLTTPTEIQKYSIPTLL-----SGKSAILVAETGCGKTLSF 93 (134)
Q Consensus 36 ~~~~~f~~~~l~~~i~~~l~~~g~~~~t~iQ~~~i~~~~-----~g~dvli~a~tGsGKT~~~ 93 (134)
.+-.+|+++.-.+...+.|.+.=. .+. ..|.+. ..+.+++.||+|+|||...
T Consensus 12 ~~~~~~~di~G~~~~~~~l~~~i~---~~~---~~~~~~~~~~~~~~~vLl~GppGtGKT~la 68 (322)
T 3eie_A 12 KPNVKWEDVAGLEGAKEALKEAVI---LPV---KFPHLFKGNRKPTSGILLYGPPGTGKSYLA 68 (322)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHTH---HHH---HCGGGCCTTCCCCCEEEEECSSSSCHHHHH
T ss_pred CCCCCHHHhcChHHHHHHHHHHHH---HHH---hCHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 344579999888888888876310 111 111221 2346999999999999764
No 122
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=92.80 E-value=0.039 Score=39.49 Aligned_cols=54 Identities=28% Similarity=0.245 Sum_probs=31.3
Q ss_pred CCCCcccCCCCHHHHHHHHHC--CCCCChHHHHHHHHHHHcCCCeEEEcCCCCchhHHh
Q psy7268 37 DLGTFEDTGLAPEIIDIFTKR--GLTTPTEIQKYSIPTLLSGKSAILVAETGCGKTLSF 93 (134)
Q Consensus 37 ~~~~f~~~~l~~~i~~~l~~~--g~~~~t~iQ~~~i~~~~~g~dvli~a~tGsGKT~~~ 93 (134)
+-.+|+++.-.+...+.+.+. .+..+...+.. .....+.+++.||+|+|||...
T Consensus 7 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~~vll~G~~GtGKT~la 62 (257)
T 1lv7_A 7 IKTTFADVAGCDEAKEEVAELVEYLREPSRFQKL---GGKIPKGVLMVGPPGTGKTLLA 62 (257)
T ss_dssp SCCCGGGSCSCHHHHHHTHHHHHHHHCGGGC--------CCCCEEEEECCTTSCHHHHH
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHc---CCCCCCeEEEECcCCCCHHHHH
Confidence 345788888888877777652 01111100000 0112356999999999999664
No 123
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=92.79 E-value=0.071 Score=39.56 Aligned_cols=26 Identities=27% Similarity=0.305 Sum_probs=20.2
Q ss_pred HHHHHHHcCCCeEEEcCCCCchhHHh
Q psy7268 68 YSIPTLLSGKSAILVAETGCGKTLSF 93 (134)
Q Consensus 68 ~~i~~~~~g~dvli~a~tGsGKT~~~ 93 (134)
.+.-.+..|.++++.||+|+|||...
T Consensus 38 ~l~~~l~~~~~vll~G~pGtGKT~la 63 (331)
T 2r44_A 38 RLLIGICTGGHILLEGVPGLAKTLSV 63 (331)
T ss_dssp HHHHHHHHTCCEEEESCCCHHHHHHH
T ss_pred HHHHHHHcCCeEEEECCCCCcHHHHH
Confidence 33344557899999999999999654
No 124
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=92.69 E-value=0.16 Score=33.72 Aligned_cols=19 Identities=26% Similarity=0.408 Sum_probs=16.7
Q ss_pred cCCCeEEEcCCCCchhHHh
Q psy7268 75 SGKSAILVAETGCGKTLSF 93 (134)
Q Consensus 75 ~g~dvli~a~tGsGKT~~~ 93 (134)
.|+.+++.+|+|+|||...
T Consensus 35 ~g~~~~l~G~~G~GKTtL~ 53 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLL 53 (149)
T ss_dssp CCSEEEEESSSTTTTCHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 6888999999999999654
No 125
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=92.63 E-value=0.063 Score=35.64 Aligned_cols=25 Identities=36% Similarity=0.561 Sum_probs=18.0
Q ss_pred CCCeEEEcCCCCchhHHhHHHHHHHH
Q psy7268 76 GKSAILVAETGCGKTLSFLAPLVQQI 101 (134)
Q Consensus 76 g~dvli~a~tGsGKT~~~~lpil~~~ 101 (134)
+..+++.|++|+|||... -.+...+
T Consensus 43 ~~~~ll~G~~G~GKT~l~-~~~~~~~ 67 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIV-EGLAQRI 67 (195)
T ss_dssp SCEEEEECCTTSCHHHHH-HHHHHHH
T ss_pred CCceEEECCCCCCHHHHH-HHHHHHH
Confidence 457999999999999764 3334443
No 126
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=92.59 E-value=0.42 Score=34.51 Aligned_cols=18 Identities=33% Similarity=0.462 Sum_probs=15.7
Q ss_pred CCCeEEEcCCCCchhHHh
Q psy7268 76 GKSAILVAETGCGKTLSF 93 (134)
Q Consensus 76 g~dvli~a~tGsGKT~~~ 93 (134)
+..+++.||+|+|||...
T Consensus 50 ~~~vll~G~~GtGKT~la 67 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIA 67 (310)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 568999999999999664
No 127
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=92.48 E-value=0.13 Score=36.90 Aligned_cols=19 Identities=32% Similarity=0.527 Sum_probs=16.3
Q ss_pred cCCCeEEEcCCCCchhHHh
Q psy7268 75 SGKSAILVAETGCGKTLSF 93 (134)
Q Consensus 75 ~g~dvli~a~tGsGKT~~~ 93 (134)
.+..+++.|++|+|||...
T Consensus 28 ~~~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIA 46 (265)
T ss_dssp SCSCEEEECCTTSCHHHHH
T ss_pred CCCCEEEECCCCCcHHHHH
Confidence 5678999999999999654
No 128
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=92.26 E-value=0.21 Score=34.95 Aligned_cols=20 Identities=25% Similarity=0.313 Sum_probs=16.7
Q ss_pred cCCCeEEEcCCCCchhHHhH
Q psy7268 75 SGKSAILVAETGCGKTLSFL 94 (134)
Q Consensus 75 ~g~dvli~a~tGsGKT~~~~ 94 (134)
.|.-+++.|++|+|||...+
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~ 41 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQ 41 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 56778999999999997653
No 129
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=92.19 E-value=0.075 Score=36.89 Aligned_cols=19 Identities=16% Similarity=0.132 Sum_probs=16.3
Q ss_pred cCCCeEEEcCCCCchhHHh
Q psy7268 75 SGKSAILVAETGCGKTLSF 93 (134)
Q Consensus 75 ~g~dvli~a~tGsGKT~~~ 93 (134)
.+..+++.||+|+|||...
T Consensus 51 ~~~~~ll~G~~G~GKT~la 69 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLI 69 (242)
T ss_dssp SCSEEEEECSTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 4678999999999999754
No 130
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=91.89 E-value=0.2 Score=35.10 Aligned_cols=25 Identities=28% Similarity=0.368 Sum_probs=17.9
Q ss_pred cCCCeEEEcCCCCchhHHhHHHHHH
Q psy7268 75 SGKSAILVAETGCGKTLSFLAPLVQ 99 (134)
Q Consensus 75 ~g~dvli~a~tGsGKT~~~~lpil~ 99 (134)
.|.-+++.|++|+|||...+--+.+
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~ 53 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 3566899999999999655433333
No 131
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=91.89 E-value=0.27 Score=33.73 Aligned_cols=19 Identities=32% Similarity=0.473 Sum_probs=15.2
Q ss_pred CCCeEEEcCCCCchhHHhH
Q psy7268 76 GKSAILVAETGCGKTLSFL 94 (134)
Q Consensus 76 g~dvli~a~tGsGKT~~~~ 94 (134)
|.=.++.|+.|+|||...+
T Consensus 3 g~i~vi~G~~gsGKTT~ll 21 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELL 21 (184)
T ss_dssp CCEEEEEESTTSSHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHH
Confidence 4557789999999997763
No 132
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=91.84 E-value=0.064 Score=40.46 Aligned_cols=27 Identities=7% Similarity=0.105 Sum_probs=19.7
Q ss_pred cCCCeEEEcCCCCchhHHhHHHHHHHHH
Q psy7268 75 SGKSAILVAETGCGKTLSFLAPLVQQIL 102 (134)
Q Consensus 75 ~g~dvli~a~tGsGKT~~~~lpil~~~~ 102 (134)
.+.++++.||+|+|||... -.++..+.
T Consensus 44 ~~~~lli~GpPGTGKT~~v-~~v~~~L~ 70 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLV-NDVMDELI 70 (318)
T ss_dssp CCCEEEEECCCSHHHHHHH-HHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH-HHHHHHHH
Confidence 3567999999999999764 34445554
No 133
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=91.82 E-value=0.077 Score=38.73 Aligned_cols=17 Identities=24% Similarity=0.247 Sum_probs=14.8
Q ss_pred CCeEEEcCCCCchhHHh
Q psy7268 77 KSAILVAETGCGKTLSF 93 (134)
Q Consensus 77 ~dvli~a~tGsGKT~~~ 93 (134)
.++++.||+|+|||...
T Consensus 68 ~~vll~G~~GtGKT~la 84 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVA 84 (309)
T ss_dssp CEEEEEECTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 46999999999999765
No 134
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=91.68 E-value=0.068 Score=35.52 Aligned_cols=18 Identities=33% Similarity=0.556 Sum_probs=15.2
Q ss_pred CCCeEEEcCCCCchhHHh
Q psy7268 76 GKSAILVAETGCGKTLSF 93 (134)
Q Consensus 76 g~dvli~a~tGsGKT~~~ 93 (134)
...+++.||+|+|||...
T Consensus 43 ~~~vll~G~~G~GKT~la 60 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIV 60 (187)
T ss_dssp SCEEEEESCGGGCHHHHH
T ss_pred CCceEEECCCCCCHHHHH
Confidence 457999999999999654
No 135
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=91.54 E-value=0.1 Score=35.41 Aligned_cols=19 Identities=21% Similarity=0.333 Sum_probs=15.9
Q ss_pred cCCCeEEEcCCCCchhHHh
Q psy7268 75 SGKSAILVAETGCGKTLSF 93 (134)
Q Consensus 75 ~g~dvli~a~tGsGKT~~~ 93 (134)
.|+-+.+.||+|+|||...
T Consensus 4 ~g~~i~i~GpsGsGKSTL~ 22 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIK 22 (180)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5677899999999999654
No 136
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=91.49 E-value=0.03 Score=41.08 Aligned_cols=53 Identities=25% Similarity=0.295 Sum_probs=28.4
Q ss_pred CCCcccCCCCHHHHHHHHHCCCCCChHHH-HHHHHHHH--cCCCeEEEcCCCCchhHHh
Q psy7268 38 LGTFEDTGLAPEIIDIFTKRGLTTPTEIQ-KYSIPTLL--SGKSAILVAETGCGKTLSF 93 (134)
Q Consensus 38 ~~~f~~~~l~~~i~~~l~~~g~~~~t~iQ-~~~i~~~~--~g~dvli~a~tGsGKT~~~ 93 (134)
-.+|++++-.+++.+.|.+.= ..|.. ..++..+- -.+.+++.||+|+|||...
T Consensus 6 ~~~~~di~g~~~~~~~l~~~i---~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLa 61 (274)
T 2x8a_A 6 NVTWADIGALEDIREELTMAI---LAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLA 61 (274)
T ss_dssp ------CCHHHHHHHHHHHHH---THHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHH---HHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHH
Confidence 357889888888888887621 11211 12222221 1234999999999999764
No 137
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=91.46 E-value=0.24 Score=35.35 Aligned_cols=39 Identities=15% Similarity=0.156 Sum_probs=24.7
Q ss_pred cCCCeEEEcCCCCchhHHhHHHHHHHHHhhcCCCCCCCCCCCcEEEEEcCc
Q psy7268 75 SGKSAILVAETGCGKTLSFLAPLVQQILTWKSRPEYKPELNAPLALIITPG 125 (134)
Q Consensus 75 ~g~dvli~a~tGsGKT~~~~lpil~~~~~~~~~~~~~~~~~~~~~lil~Pt 125 (134)
.|.=+++.|++|+|||... +-++.+... .+.+++++.|.
T Consensus 11 ~G~i~litG~mGsGKTT~l-l~~~~r~~~-----------~g~kVli~~~~ 49 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAEL-IRRLHRLEY-----------ADVKYLVFKPK 49 (223)
T ss_dssp CCEEEEEECSTTSCHHHHH-HHHHHHHHH-----------TTCCEEEEEEC
T ss_pred CcEEEEEECCCCCcHHHHH-HHHHHHHHh-----------cCCEEEEEEec
Confidence 3455788899999999766 444444433 34456666544
No 138
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=91.43 E-value=0.05 Score=39.53 Aligned_cols=52 Identities=25% Similarity=0.187 Sum_probs=33.1
Q ss_pred CCCCcccCCCCHHHHHHHHHCC--CCCChHHHHHHHHHHH--cCCCeEEEcCCCCchhHHh
Q psy7268 37 DLGTFEDTGLAPEIIDIFTKRG--LTTPTEIQKYSIPTLL--SGKSAILVAETGCGKTLSF 93 (134)
Q Consensus 37 ~~~~f~~~~l~~~i~~~l~~~g--~~~~t~iQ~~~i~~~~--~g~dvli~a~tGsGKT~~~ 93 (134)
+-.+|+++...++..+.+.+.- |.. ...+..+- -.+.+++.+|+|+|||...
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~~~~~-----~~~l~~~~~~~~~gvll~Gp~GtGKTtl~ 90 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVEFLKN-----PSRFHEMGARIPKGVLLVGPPGVGKTHLA 90 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHHHHHC-----HHHHHHTTCCCCCEEEEECCTTSSHHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHHC-----HHHHHHcCCCCCCeEEEECCCcChHHHHH
Confidence 5568999988888887777641 111 12222221 1234999999999999654
No 139
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=91.41 E-value=0.093 Score=38.17 Aligned_cols=54 Identities=17% Similarity=0.100 Sum_probs=32.2
Q ss_pred CCCCcccCCCCHHHHHHHHHCCCCCChHHHH-HHHHHH-HcCCCeEEEcCCCCchhHHh
Q psy7268 37 DLGTFEDTGLAPEIIDIFTKRGLTTPTEIQK-YSIPTL-LSGKSAILVAETGCGKTLSF 93 (134)
Q Consensus 37 ~~~~f~~~~l~~~i~~~l~~~g~~~~t~iQ~-~~i~~~-~~g~dvli~a~tGsGKT~~~ 93 (134)
+-.+|+++.-.+...+.+.+.=. .+... ..+..+ ..++.+++.||+|+|||...
T Consensus 16 ~~~~~~~i~G~~~~~~~l~~~i~---~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la 71 (297)
T 3b9p_A 16 AKVEWTDIAGQDVAKQALQEMVI---LPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLA 71 (297)
T ss_dssp SCCCGGGSCCCHHHHHHHHHHTH---HHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHH---hhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHH
Confidence 33578888878888877765310 00000 000001 13568999999999999764
No 140
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=91.39 E-value=0.12 Score=39.28 Aligned_cols=21 Identities=29% Similarity=0.430 Sum_probs=17.9
Q ss_pred HHcCCCeEEEcCCCCchhHHh
Q psy7268 73 LLSGKSAILVAETGCGKTLSF 93 (134)
Q Consensus 73 ~~~g~dvli~a~tGsGKT~~~ 93 (134)
+..|..+.+.||||+|||...
T Consensus 172 i~~G~~i~ivG~sGsGKSTll 192 (361)
T 2gza_A 172 VQLERVIVVAGETGSGKTTLM 192 (361)
T ss_dssp HHTTCCEEEEESSSSCHHHHH
T ss_pred HhcCCEEEEECCCCCCHHHHH
Confidence 457999999999999999653
No 141
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=91.16 E-value=0.25 Score=34.04 Aligned_cols=19 Identities=37% Similarity=0.403 Sum_probs=15.8
Q ss_pred cCCCeEEEcCCCCchhHHh
Q psy7268 75 SGKSAILVAETGCGKTLSF 93 (134)
Q Consensus 75 ~g~dvli~a~tGsGKT~~~ 93 (134)
.|.-+++.||+|+|||...
T Consensus 22 ~G~~~~i~G~~GsGKTtl~ 40 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFS 40 (235)
T ss_dssp TTCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHH
Confidence 4667899999999999654
No 142
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=91.10 E-value=0.36 Score=36.42 Aligned_cols=18 Identities=39% Similarity=0.438 Sum_probs=15.5
Q ss_pred CCCeEEEcCCCCchhHHh
Q psy7268 76 GKSAILVAETGCGKTLSF 93 (134)
Q Consensus 76 g~dvli~a~tGsGKT~~~ 93 (134)
.+.+++.||+|+|||...
T Consensus 117 ~~~vLl~GppGtGKT~la 134 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIG 134 (357)
T ss_dssp CSEEEEESSTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 457999999999999765
No 143
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=91.06 E-value=0.18 Score=39.35 Aligned_cols=35 Identities=17% Similarity=0.301 Sum_probs=22.3
Q ss_pred HHHHHHHHH--cCCCeEEEcCCCCchhHHhHHHHHHHH
Q psy7268 66 QKYSIPTLL--SGKSAILVAETGCGKTLSFLAPLVQQI 101 (134)
Q Consensus 66 Q~~~i~~~~--~g~dvli~a~tGsGKT~~~~lpil~~~ 101 (134)
+..++..++ .|.-+++.||||||||... -.++..+
T Consensus 155 ~~~~L~~l~~~~ggii~I~GpnGSGKTTlL-~allg~l 191 (418)
T 1p9r_A 155 NHDNFRRLIKRPHGIILVTGPTGSGKSTTL-YAGLQEL 191 (418)
T ss_dssp HHHHHHHHHTSSSEEEEEECSTTSCHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHhcCCeEEEECCCCCCHHHHH-HHHHhhc
Confidence 444554444 3445889999999999653 3444444
No 144
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=91.02 E-value=0.47 Score=35.02 Aligned_cols=42 Identities=17% Similarity=0.078 Sum_probs=27.7
Q ss_pred CcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHH----cCCCeEEEcCCCCchhHHh
Q psy7268 40 TFEDTGLAPEIIDIFTKRGLTTPTEIQKYSIPTLL----SGKSAILVAETGCGKTLSF 93 (134)
Q Consensus 40 ~f~~~~l~~~i~~~l~~~g~~~~t~iQ~~~i~~~~----~g~dvli~a~tGsGKT~~~ 93 (134)
+|+++--.+..++.+.. .+.... ...++++.||+|+|||...
T Consensus 27 ~~~~iiG~~~~~~~l~~------------~l~~~~~~~~~~~~vll~G~~GtGKT~la 72 (338)
T 3pfi_A 27 NFDGYIGQESIKKNLNV------------FIAAAKKRNECLDHILFSGPAGLGKTTLA 72 (338)
T ss_dssp SGGGCCSCHHHHHHHHH------------HHHHHHHTTSCCCCEEEECSTTSSHHHHH
T ss_pred CHHHhCChHHHHHHHHH------------HHHHHHhcCCCCCeEEEECcCCCCHHHHH
Confidence 67777666766666543 111111 2247999999999999764
No 145
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=91.00 E-value=0.12 Score=35.66 Aligned_cols=19 Identities=21% Similarity=0.468 Sum_probs=15.0
Q ss_pred cCCCeEEEcCCCCchhHHh
Q psy7268 75 SGKSAILVAETGCGKTLSF 93 (134)
Q Consensus 75 ~g~dvli~a~tGsGKT~~~ 93 (134)
.|+-+.+.||+|+|||...
T Consensus 3 ~g~~i~lvGpsGaGKSTLl 21 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLL 21 (198)
T ss_dssp --CCEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4778899999999999764
No 146
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=90.99 E-value=0.26 Score=37.52 Aligned_cols=21 Identities=19% Similarity=0.379 Sum_probs=17.0
Q ss_pred cCCCeEEEcCCCCchhHHhHH
Q psy7268 75 SGKSAILVAETGCGKTLSFLA 95 (134)
Q Consensus 75 ~g~dvli~a~tGsGKT~~~~l 95 (134)
.+.++++.|+||+|||...-.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~ 54 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKM 54 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHH
Confidence 567899999999999966433
No 147
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=90.99 E-value=0.12 Score=35.47 Aligned_cols=20 Identities=25% Similarity=0.084 Sum_probs=16.7
Q ss_pred HcCCCeEEEcCCCCchhHHh
Q psy7268 74 LSGKSAILVAETGCGKTLSF 93 (134)
Q Consensus 74 ~~g~dvli~a~tGsGKT~~~ 93 (134)
..++.+++.|++|+|||...
T Consensus 23 ~~~~~i~l~G~~GsGKsTl~ 42 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTLG 42 (199)
T ss_dssp -CCCEEEEECCTTSCHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHH
Confidence 35778999999999999774
No 148
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=90.98 E-value=0.31 Score=33.87 Aligned_cols=39 Identities=13% Similarity=0.199 Sum_probs=24.7
Q ss_pred CCCeEEEcCCCCchhHHhHHHHHHHHHhhcCCCCCCCCCCCcEEEEEcCcH
Q psy7268 76 GKSAILVAETGCGKTLSFLAPLVQQILTWKSRPEYKPELNAPLALIITPGR 126 (134)
Q Consensus 76 g~dvli~a~tGsGKT~~~~lpil~~~~~~~~~~~~~~~~~~~~~lil~Pt~ 126 (134)
|+=.++.|+.|+|||...+ -++.+... .+.+++++.|..
T Consensus 8 g~i~v~~G~mgsGKTT~ll-~~a~r~~~-----------~g~kV~v~k~~~ 46 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELI-RRIRRAKI-----------AKQKIQVFKPEI 46 (191)
T ss_dssp CEEEEEECSTTSSHHHHHH-HHHHHHHH-----------TTCCEEEEEEC-
T ss_pred CEEEEEECCCCCcHHHHHH-HHHHHHHH-----------CCCEEEEEEecc
Confidence 4446788999999997654 44444433 455677776553
No 149
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=90.85 E-value=0.28 Score=47.17 Aligned_cols=49 Identities=29% Similarity=0.340 Sum_probs=32.5
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHHHHH---HHcCCCeEEEcCCCCchhHHhH
Q psy7268 46 LAPEIIDIFTKRGLTTPTEIQKYSIPT---LLSGKSAILVAETGCGKTLSFL 94 (134)
Q Consensus 46 l~~~i~~~l~~~g~~~~t~iQ~~~i~~---~~~g~dvli~a~tGsGKT~~~~ 94 (134)
|.+.+.+.+.+.|+..--..-.+++.. +.....++++||+|+|||.++-
T Consensus 873 l~~ai~~~~~~~~L~~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~ 924 (3245)
T 3vkg_A 873 LRKKIQEIAKQRHLVTKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWE 924 (3245)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHH
T ss_pred HHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHH
Confidence 445666777778884433344444433 2245569999999999999873
No 150
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=90.81 E-value=0.11 Score=38.86 Aligned_cols=18 Identities=28% Similarity=0.586 Sum_probs=15.4
Q ss_pred CCCeEEEcCCCCchhHHh
Q psy7268 76 GKSAILVAETGCGKTLSF 93 (134)
Q Consensus 76 g~dvli~a~tGsGKT~~~ 93 (134)
++.+++.||+|+|||...
T Consensus 70 ~~~vLl~GppGtGKT~la 87 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIA 87 (368)
T ss_dssp TCEEEEEESTTSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 457999999999999764
No 151
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=90.66 E-value=0.72 Score=43.86 Aligned_cols=48 Identities=25% Similarity=0.391 Sum_probs=32.6
Q ss_pred CCHHHHHHHHHCCCCCChHHH-HHHHH---HHHcCCCeEEEcCCCCchhHHhH
Q psy7268 46 LAPEIIDIFTKRGLTTPTEIQ-KYSIP---TLLSGKSAILVAETGCGKTLSFL 94 (134)
Q Consensus 46 l~~~i~~~l~~~g~~~~t~iQ-~~~i~---~~~~g~dvli~a~tGsGKT~~~~ 94 (134)
+.+.+.+.+.+.|+ .+++.+ ..++. .+.....+++.||||+|||.++-
T Consensus 890 l~~~i~~~~~~~~l-~~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~ 941 (2695)
T 4akg_A 890 IVQCLKDAGQRSGF-SMSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWK 941 (2695)
T ss_dssp HHHHHHHHHHHHTC-CCCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHHHHcCC-cccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHH
Confidence 34556677777788 455543 33333 23456779999999999999853
No 152
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=90.49 E-value=0.22 Score=36.85 Aligned_cols=19 Identities=26% Similarity=0.497 Sum_probs=16.2
Q ss_pred cCCCeEEEcCCCCchhHHh
Q psy7268 75 SGKSAILVAETGCGKTLSF 93 (134)
Q Consensus 75 ~g~dvli~a~tGsGKT~~~ 93 (134)
.+..+++.|++|+|||...
T Consensus 24 ~~~~vLi~Ge~GtGKt~lA 42 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVA 42 (304)
T ss_dssp TTSCEEEESCTTSCHHHHH
T ss_pred CCCcEEEECCCCchHHHHH
Confidence 4668999999999999764
No 153
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=90.38 E-value=0.16 Score=38.30 Aligned_cols=20 Identities=40% Similarity=0.574 Sum_probs=17.3
Q ss_pred HHcCCCeEEEcCCCCchhHH
Q psy7268 73 LLSGKSAILVAETGCGKTLS 92 (134)
Q Consensus 73 ~~~g~dvli~a~tGsGKT~~ 92 (134)
+..|..+.+.||||+|||..
T Consensus 168 i~~g~~v~i~G~~GsGKTTl 187 (330)
T 2pt7_A 168 IAIGKNVIVCGGTGSGKTTY 187 (330)
T ss_dssp HHHTCCEEEEESTTSCHHHH
T ss_pred ccCCCEEEEECCCCCCHHHH
Confidence 44789999999999999964
No 154
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=90.31 E-value=0.15 Score=35.37 Aligned_cols=19 Identities=26% Similarity=0.331 Sum_probs=15.6
Q ss_pred cCCCeEEEcCCCCchhHHh
Q psy7268 75 SGKSAILVAETGCGKTLSF 93 (134)
Q Consensus 75 ~g~dvli~a~tGsGKT~~~ 93 (134)
.|+-+++.||+|+|||...
T Consensus 7 ~g~~i~l~GpsGsGKsTl~ 25 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVR 25 (208)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECcCCCCHHHHH
Confidence 4666889999999999654
No 155
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=90.20 E-value=0.12 Score=37.62 Aligned_cols=21 Identities=19% Similarity=0.237 Sum_probs=17.2
Q ss_pred HHcCCCeEEEcCCCCchhHHh
Q psy7268 73 LLSGKSAILVAETGCGKTLSF 93 (134)
Q Consensus 73 ~~~g~dvli~a~tGsGKT~~~ 93 (134)
+..|.-+.+.||||+|||...
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll 42 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTI 42 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHH
Confidence 346777999999999999764
No 156
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=90.18 E-value=0.14 Score=35.37 Aligned_cols=21 Identities=14% Similarity=0.237 Sum_probs=17.2
Q ss_pred HHcCCCeEEEcCCCCchhHHh
Q psy7268 73 LLSGKSAILVAETGCGKTLSF 93 (134)
Q Consensus 73 ~~~g~dvli~a~tGsGKT~~~ 93 (134)
+..|+-++++||+|+|||...
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~ 29 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLI 29 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHH
T ss_pred cccCCEEEEECCCCCCHHHHH
Confidence 346778999999999999653
No 157
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=90.11 E-value=0.12 Score=34.89 Aligned_cols=20 Identities=30% Similarity=0.471 Sum_probs=16.3
Q ss_pred HcCCCeEEEcCCCCchhHHh
Q psy7268 74 LSGKSAILVAETGCGKTLSF 93 (134)
Q Consensus 74 ~~g~dvli~a~tGsGKT~~~ 93 (134)
..|.-+.+.|++|+|||...
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~ 26 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIA 26 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHH
Confidence 35677899999999999653
No 158
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=90.11 E-value=0.13 Score=34.65 Aligned_cols=20 Identities=20% Similarity=0.265 Sum_probs=16.4
Q ss_pred cCCCeEEEcCCCCchhHHhH
Q psy7268 75 SGKSAILVAETGCGKTLSFL 94 (134)
Q Consensus 75 ~g~dvli~a~tGsGKT~~~~ 94 (134)
.|.-+.+.||+|+|||..+-
T Consensus 8 ~gei~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAK 27 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHH
Confidence 45668899999999997764
No 159
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=90.10 E-value=0.44 Score=37.34 Aligned_cols=37 Identities=14% Similarity=0.129 Sum_probs=24.3
Q ss_pred cCCCeEEEcCCCCchhHHhHHHHHHHHHhhcCCCCCCCCCCCcEEEEEc
Q psy7268 75 SGKSAILVAETGCGKTLSFLAPLVQQILTWKSRPEYKPELNAPLALIIT 123 (134)
Q Consensus 75 ~g~dvli~a~tGsGKT~~~~lpil~~~~~~~~~~~~~~~~~~~~~lil~ 123 (134)
.|.-+++.|++|+|||... +-++..+.. ++..+++++
T Consensus 196 ~G~liiIaG~pG~GKTtla-l~ia~~~a~-----------~g~~vl~fS 232 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFA-LKQAKNMSD-----------NDDVVNLHS 232 (444)
T ss_dssp SSCEEEEEECSSSSHHHHH-HHHHHHHHH-----------TTCEEEEEC
T ss_pred CCcEEEEEeCCCCChHHHH-HHHHHHHHH-----------cCCEEEEEE
Confidence 4556899999999999655 444444433 244577775
No 160
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=90.03 E-value=0.19 Score=34.02 Aligned_cols=17 Identities=24% Similarity=0.360 Sum_probs=14.5
Q ss_pred CCeEEEcCCCCchhHHh
Q psy7268 77 KSAILVAETGCGKTLSF 93 (134)
Q Consensus 77 ~dvli~a~tGsGKT~~~ 93 (134)
..+++.||+|+|||...
T Consensus 39 ~~~ll~G~~G~GKT~l~ 55 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATA 55 (226)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 46999999999999654
No 161
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=90.00 E-value=0.15 Score=34.74 Aligned_cols=20 Identities=25% Similarity=0.273 Sum_probs=16.5
Q ss_pred HcCCCeEEEcCCCCchhHHh
Q psy7268 74 LSGKSAILVAETGCGKTLSF 93 (134)
Q Consensus 74 ~~g~dvli~a~tGsGKT~~~ 93 (134)
..|.-+.+.|++|+|||...
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~ 23 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVR 23 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 35777899999999999654
No 162
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=90.00 E-value=0.15 Score=33.97 Aligned_cols=18 Identities=22% Similarity=0.233 Sum_probs=15.2
Q ss_pred CCCeEEEcCCCCchhHHh
Q psy7268 76 GKSAILVAETGCGKTLSF 93 (134)
Q Consensus 76 g~dvli~a~tGsGKT~~~ 93 (134)
+.-+++.|++|+|||...
T Consensus 3 ~~~i~l~G~~GsGKST~a 20 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIV 20 (178)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 456899999999999764
No 163
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=89.98 E-value=0.18 Score=37.29 Aligned_cols=25 Identities=16% Similarity=0.181 Sum_probs=18.2
Q ss_pred CCCeEEEcCCCCchhHHhHHHHHHHH
Q psy7268 76 GKSAILVAETGCGKTLSFLAPLVQQI 101 (134)
Q Consensus 76 g~dvli~a~tGsGKT~~~~lpil~~~ 101 (134)
+..+++.||+|+|||... -.+...+
T Consensus 37 ~~~lll~G~~GtGKT~la-~~i~~~~ 61 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLL-QAAGNEA 61 (324)
T ss_dssp CSSEEEECSSSSSHHHHH-HHHHHHH
T ss_pred CCeEEEECCCCCcHHHHH-HHHHHHH
Confidence 468999999999999664 3344444
No 164
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=89.97 E-value=0.16 Score=33.31 Aligned_cols=16 Identities=19% Similarity=0.262 Sum_probs=13.4
Q ss_pred CeEEEcCCCCchhHHh
Q psy7268 78 SAILVAETGCGKTLSF 93 (134)
Q Consensus 78 dvli~a~tGsGKT~~~ 93 (134)
-+++.|++|||||...
T Consensus 3 ~I~l~G~~GsGKsT~a 18 (179)
T 3lw7_A 3 VILITGMPGSGKSEFA 18 (179)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3678999999999764
No 165
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=89.90 E-value=0.17 Score=34.02 Aligned_cols=18 Identities=28% Similarity=0.194 Sum_probs=15.5
Q ss_pred CCCeEEEcCCCCchhHHh
Q psy7268 76 GKSAILVAETGCGKTLSF 93 (134)
Q Consensus 76 g~dvli~a~tGsGKT~~~ 93 (134)
++.+++.|++|+|||...
T Consensus 5 ~~~i~l~G~~GsGKst~a 22 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVG 22 (185)
T ss_dssp CCEEEEECSTTSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 567899999999999764
No 166
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=89.83 E-value=0.18 Score=34.39 Aligned_cols=19 Identities=32% Similarity=0.378 Sum_probs=15.9
Q ss_pred cCCCeEEEcCCCCchhHHh
Q psy7268 75 SGKSAILVAETGCGKTLSF 93 (134)
Q Consensus 75 ~g~dvli~a~tGsGKT~~~ 93 (134)
.|.-+.+.||+|+|||...
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~ 24 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLV 24 (205)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECcCCCCHHHHH
Confidence 5677889999999999754
No 167
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=89.79 E-value=0.21 Score=33.50 Aligned_cols=20 Identities=25% Similarity=0.225 Sum_probs=16.8
Q ss_pred HcCCCeEEEcCCCCchhHHh
Q psy7268 74 LSGKSAILVAETGCGKTLSF 93 (134)
Q Consensus 74 ~~g~dvli~a~tGsGKT~~~ 93 (134)
..++.+++.|++|+|||...
T Consensus 9 ~~~~~i~i~G~~GsGKst~~ 28 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLG 28 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHH
Confidence 35678999999999999764
No 168
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=89.74 E-value=0.15 Score=36.73 Aligned_cols=17 Identities=29% Similarity=0.217 Sum_probs=14.8
Q ss_pred CCeEEEcCCCCchhHHh
Q psy7268 77 KSAILVAETGCGKTLSF 93 (134)
Q Consensus 77 ~dvli~a~tGsGKT~~~ 93 (134)
..+++.||+|+|||...
T Consensus 65 ~~vLl~G~~GtGKT~la 81 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALA 81 (272)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCcHHHHH
Confidence 36999999999999765
No 169
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=89.70 E-value=0.66 Score=36.83 Aligned_cols=17 Identities=35% Similarity=0.530 Sum_probs=15.0
Q ss_pred CCeEEEcCCCCchhHHh
Q psy7268 77 KSAILVAETGCGKTLSF 93 (134)
Q Consensus 77 ~dvli~a~tGsGKT~~~ 93 (134)
+.+++.||+|+|||...
T Consensus 78 ~~lLL~GppGtGKTtla 94 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAA 94 (516)
T ss_dssp SEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 57999999999999765
No 170
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=89.70 E-value=0.21 Score=33.15 Aligned_cols=18 Identities=28% Similarity=0.364 Sum_probs=15.3
Q ss_pred CCCeEEEcCCCCchhHHh
Q psy7268 76 GKSAILVAETGCGKTLSF 93 (134)
Q Consensus 76 g~dvli~a~tGsGKT~~~ 93 (134)
+..+.+.|++|+|||...
T Consensus 4 ~~~i~l~G~~GsGKSTl~ 21 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIG 21 (173)
T ss_dssp CCCEEEECCTTSCHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 567899999999999763
No 171
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=89.61 E-value=0.6 Score=37.46 Aligned_cols=27 Identities=15% Similarity=0.279 Sum_probs=19.4
Q ss_pred cCCCeEEEcCCCCchhHHhHHHHHHHH
Q psy7268 75 SGKSAILVAETGCGKTLSFLAPLVQQI 101 (134)
Q Consensus 75 ~g~dvli~a~tGsGKT~~~~lpil~~~ 101 (134)
.+.++++.|.||||||.+.-.-++..+
T Consensus 166 ~~pHlLIaG~TGSGKSt~L~~li~sLl 192 (512)
T 2ius_A 166 KMPHLLVAGTTGSGASVGVNAMILSML 192 (512)
T ss_dssp GSCSEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 356899999999999976543333333
No 172
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=89.58 E-value=0.36 Score=32.94 Aligned_cols=16 Identities=25% Similarity=0.326 Sum_probs=13.9
Q ss_pred CeEEEcCCCCchhHHh
Q psy7268 78 SAILVAETGCGKTLSF 93 (134)
Q Consensus 78 dvli~a~tGsGKT~~~ 93 (134)
.+++.||+|+|||...
T Consensus 47 ~~ll~G~~G~GKT~l~ 62 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIA 62 (250)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5899999999999654
No 173
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=89.54 E-value=0.22 Score=34.96 Aligned_cols=21 Identities=14% Similarity=0.218 Sum_probs=16.6
Q ss_pred HHcCCCeEEEcCCCCchhHHh
Q psy7268 73 LLSGKSAILVAETGCGKTLSF 93 (134)
Q Consensus 73 ~~~g~dvli~a~tGsGKT~~~ 93 (134)
+..|+-+.+.||+|+|||...
T Consensus 20 i~~G~~~~lvGpsGsGKSTLl 40 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGTLI 40 (218)
T ss_dssp --CCCCEEEECSTTSSHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHH
Confidence 346888999999999999654
No 174
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=89.52 E-value=0.31 Score=37.32 Aligned_cols=24 Identities=29% Similarity=0.535 Sum_probs=18.9
Q ss_pred HHHHHcCCC--eEEEcCCCCchhHHh
Q psy7268 70 IPTLLSGKS--AILVAETGCGKTLSF 93 (134)
Q Consensus 70 i~~~~~g~d--vli~a~tGsGKT~~~ 93 (134)
+..++.|.| ++.-|.||||||...
T Consensus 97 v~~~l~G~N~tifAYGQTGSGKTyTM 122 (359)
T 3nwn_A 97 VSQALDGYNGTIMCYGQTGAGKTYTM 122 (359)
T ss_dssp HHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHhCCCCEEEEEeCCCCCCccEEe
Confidence 344568887 777899999999874
No 175
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=89.42 E-value=0.2 Score=37.87 Aligned_cols=51 Identities=16% Similarity=0.203 Sum_probs=29.8
Q ss_pred CCCCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHH-----cCCCeEEEcCCCCchhHHh
Q psy7268 37 DLGTFEDTGLAPEIIDIFTKRGLTTPTEIQKYSIPTLL-----SGKSAILVAETGCGKTLSF 93 (134)
Q Consensus 37 ~~~~f~~~~l~~~i~~~l~~~g~~~~t~iQ~~~i~~~~-----~g~dvli~a~tGsGKT~~~ 93 (134)
+-.+|+++.-.+...+.|.+. .. .+ .-.|.++ ..+.+++.||+|+|||...
T Consensus 46 ~~~~~~di~G~~~~~~~l~~~-v~--~~---~~~~~~~~~~~~~~~~iLL~GppGtGKT~la 101 (355)
T 2qp9_X 46 PNVKWEDVAGLEGAKEALKEA-VI--LP---VKFPHLFKGNRKPTSGILLYGPPGTGKSYLA 101 (355)
T ss_dssp -CCCGGGSCCGGGHHHHHHHH-TH--HH---HHCGGGGCSSCCCCCCEEEECSTTSCHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHH-HH--HH---HhCHHHHhcCCCCCceEEEECCCCCcHHHHH
Confidence 345677777666666666552 10 00 0011122 2357999999999999765
No 176
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=89.40 E-value=0.17 Score=39.54 Aligned_cols=45 Identities=13% Similarity=0.095 Sum_probs=29.6
Q ss_pred CCCCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHH----cCCCeEEEcCCCCchhHHh
Q psy7268 37 DLGTFEDTGLAPEIIDIFTKRGLTTPTEIQKYSIPTLL----SGKSAILVAETGCGKTLSF 93 (134)
Q Consensus 37 ~~~~f~~~~l~~~i~~~l~~~g~~~~t~iQ~~~i~~~~----~g~dvli~a~tGsGKT~~~ 93 (134)
+-..|+++.-.++..+.+... +..+. .++.+++.||+|+|||...
T Consensus 32 ~~~~~~~iiG~~~~~~~l~~~------------~~~~~~~~~~~~~iLl~GppGtGKT~la 80 (456)
T 2c9o_A 32 AKQAASGLVGQENAREACGVI------------VELIKSKKMAGRAVLLAGPPGTGKTALA 80 (456)
T ss_dssp BCSEETTEESCHHHHHHHHHH------------HHHHHTTCCTTCEEEEECCTTSSHHHHH
T ss_pred hhhchhhccCHHHHHHHHHHH------------HHHHHhCCCCCCeEEEECCCcCCHHHHH
Confidence 334577776677776655431 11222 3467999999999999775
No 177
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=89.39 E-value=0.16 Score=37.29 Aligned_cols=17 Identities=18% Similarity=0.145 Sum_probs=14.3
Q ss_pred CCeEEEcCCCCchhHHh
Q psy7268 77 KSAILVAETGCGKTLSF 93 (134)
Q Consensus 77 ~dvli~a~tGsGKT~~~ 93 (134)
+.+++.||+|+|||...
T Consensus 37 ~~lLl~GppGtGKT~la 53 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQC 53 (293)
T ss_dssp SEEEEEECTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45889999999999764
No 178
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=89.36 E-value=0.35 Score=36.51 Aligned_cols=24 Identities=25% Similarity=0.425 Sum_probs=19.2
Q ss_pred HHHHHcCCC--eEEEcCCCCchhHHh
Q psy7268 70 IPTLLSGKS--AILVAETGCGKTLSF 93 (134)
Q Consensus 70 i~~~~~g~d--vli~a~tGsGKT~~~ 93 (134)
+..++.|.| ++.-|.||||||...
T Consensus 70 v~~~l~G~n~tifAYGqTGSGKTyTm 95 (325)
T 1bg2_A 70 VKDVLEGYNGTIFAYGQTSSGKTHTM 95 (325)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhCCCeEEEEEECCCCCCCceEe
Confidence 344568887 777899999999885
No 179
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=89.32 E-value=0.21 Score=34.59 Aligned_cols=22 Identities=18% Similarity=0.339 Sum_probs=16.8
Q ss_pred HHHcCCCeEEEcCCCCchhHHh
Q psy7268 72 TLLSGKSAILVAETGCGKTLSF 93 (134)
Q Consensus 72 ~~~~g~dvli~a~tGsGKT~~~ 93 (134)
.+..|+-+.+.||+|+|||...
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl 37 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVV 37 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHH
Confidence 5667888999999999999754
No 180
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=89.09 E-value=0.19 Score=37.37 Aligned_cols=19 Identities=37% Similarity=0.382 Sum_probs=15.9
Q ss_pred cCCCeEEEcCCCCchhHHh
Q psy7268 75 SGKSAILVAETGCGKTLSF 93 (134)
Q Consensus 75 ~g~dvli~a~tGsGKT~~~ 93 (134)
.+..+++.||+|+|||...
T Consensus 43 ~~~~vll~G~~G~GKT~l~ 61 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVA 61 (387)
T ss_dssp CCCCEEECBCTTSSHHHHH
T ss_pred CCCcEEEECCCCCCHHHHH
Confidence 3567999999999999764
No 181
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=89.07 E-value=0.11 Score=37.12 Aligned_cols=18 Identities=44% Similarity=0.564 Sum_probs=15.4
Q ss_pred CCCeEEEcCCCCchhHHh
Q psy7268 76 GKSAILVAETGCGKTLSF 93 (134)
Q Consensus 76 g~dvli~a~tGsGKT~~~ 93 (134)
.+.+++.||+|+|||...
T Consensus 44 ~~~vll~G~~GtGKT~la 61 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLA 61 (268)
T ss_dssp CSCCCCBCSSCSSHHHHH
T ss_pred CceEEEECCCCCcHHHHH
Confidence 456999999999999765
No 182
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=88.99 E-value=0.24 Score=33.63 Aligned_cols=17 Identities=18% Similarity=0.485 Sum_probs=13.8
Q ss_pred CCeEEEcCCCCchhHHh
Q psy7268 77 KSAILVAETGCGKTLSF 93 (134)
Q Consensus 77 ~dvli~a~tGsGKT~~~ 93 (134)
+-+.+.||+|+|||...
T Consensus 2 ~ii~l~GpsGaGKsTl~ 18 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLL 18 (186)
T ss_dssp CCEEEESSSSSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 45778999999999653
No 183
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=88.99 E-value=0.22 Score=35.25 Aligned_cols=21 Identities=29% Similarity=0.439 Sum_probs=16.6
Q ss_pred HHcCCCeEEEcCCCCchhHHh
Q psy7268 73 LLSGKSAILVAETGCGKTLSF 93 (134)
Q Consensus 73 ~~~g~dvli~a~tGsGKT~~~ 93 (134)
+-.|+-+.+.||+|+|||...
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLl 33 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLI 33 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHH
Confidence 456888999999999999754
No 184
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=88.93 E-value=0.33 Score=36.95 Aligned_cols=23 Identities=39% Similarity=0.579 Sum_probs=18.3
Q ss_pred HHHHcCCC--eEEEcCCCCchhHHh
Q psy7268 71 PTLLSGKS--AILVAETGCGKTLSF 93 (134)
Q Consensus 71 ~~~~~g~d--vli~a~tGsGKT~~~ 93 (134)
..++.|.+ ++.-|.||||||...
T Consensus 88 ~~~l~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 88 DKLLEGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp HHHHHTCCEEEEEESSTTSSHHHHH
T ss_pred hHhhCCCceEEEEecCCCCCCCeEE
Confidence 34567887 677899999999874
No 185
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=88.89 E-value=0.21 Score=33.12 Aligned_cols=16 Identities=19% Similarity=0.225 Sum_probs=13.4
Q ss_pred CeEEEcCCCCchhHHh
Q psy7268 78 SAILVAETGCGKTLSF 93 (134)
Q Consensus 78 dvli~a~tGsGKT~~~ 93 (134)
-+++.|++|||||...
T Consensus 4 ~I~i~G~~GsGKST~a 19 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWA 19 (181)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEecCCCCCHHHHH
Confidence 3788999999999764
No 186
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=88.85 E-value=0.23 Score=34.07 Aligned_cols=19 Identities=21% Similarity=0.389 Sum_probs=16.1
Q ss_pred cCCCeEEEcCCCCchhHHh
Q psy7268 75 SGKSAILVAETGCGKTLSF 93 (134)
Q Consensus 75 ~g~dvli~a~tGsGKT~~~ 93 (134)
.|.-+.+.|++|+|||...
T Consensus 28 ~g~~i~l~G~~GsGKSTl~ 46 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIA 46 (200)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4677999999999999764
No 187
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=88.85 E-value=0.23 Score=37.52 Aligned_cols=18 Identities=39% Similarity=0.571 Sum_probs=15.5
Q ss_pred CCCeEEEcCCCCchhHHh
Q psy7268 76 GKSAILVAETGCGKTLSF 93 (134)
Q Consensus 76 g~dvli~a~tGsGKT~~~ 93 (134)
..++++.||+|+|||...
T Consensus 72 ~~~ill~Gp~GtGKT~la 89 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMA 89 (376)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCCEEEECCCCCCHHHHH
Confidence 457999999999999764
No 188
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=88.76 E-value=0.67 Score=34.39 Aligned_cols=26 Identities=15% Similarity=0.161 Sum_probs=18.2
Q ss_pred cCCCeEEEcCCCCchhHHhHHHHHHHH
Q psy7268 75 SGKSAILVAETGCGKTLSFLAPLVQQI 101 (134)
Q Consensus 75 ~g~dvli~a~tGsGKT~~~~lpil~~~ 101 (134)
.|.-+++.|++|+|||... +-++...
T Consensus 67 ~G~l~li~G~pG~GKTtl~-l~ia~~~ 92 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFA-LKQAKNM 92 (315)
T ss_dssp TTCEEEEECCTTSSHHHHH-HHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHH-HHHHHHH
Confidence 4556899999999999554 4344333
No 189
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=88.76 E-value=0.41 Score=36.42 Aligned_cols=24 Identities=25% Similarity=0.513 Sum_probs=18.8
Q ss_pred HHHHHcCCC--eEEEcCCCCchhHHh
Q psy7268 70 IPTLLSGKS--AILVAETGCGKTLSF 93 (134)
Q Consensus 70 i~~~~~g~d--vli~a~tGsGKT~~~ 93 (134)
+..++.|.| ++.-|.||||||...
T Consensus 76 v~~~l~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 76 LEAFFEGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp HHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHhhcCeeEEEecccCCCceEee
Confidence 344568887 677799999999874
No 190
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=88.73 E-value=0.67 Score=33.62 Aligned_cols=16 Identities=25% Similarity=0.418 Sum_probs=14.2
Q ss_pred CeEEEcCCCCchhHHh
Q psy7268 78 SAILVAETGCGKTLSF 93 (134)
Q Consensus 78 dvli~a~tGsGKT~~~ 93 (134)
++++.||+|+|||...
T Consensus 48 ~~ll~G~~G~GKT~la 63 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAA 63 (327)
T ss_dssp EEEEESCTTSSHHHHH
T ss_pred eEEEECcCCCCHHHHH
Confidence 6999999999999764
No 191
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=88.70 E-value=0.26 Score=34.14 Aligned_cols=16 Identities=19% Similarity=0.474 Sum_probs=13.7
Q ss_pred CCeEEEcCCCCchhHH
Q psy7268 77 KSAILVAETGCGKTLS 92 (134)
Q Consensus 77 ~dvli~a~tGsGKT~~ 92 (134)
+-+++.||+|+|||..
T Consensus 2 RpIVi~GPSG~GK~Tl 17 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEECCTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 5589999999999964
No 192
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=88.70 E-value=0.35 Score=35.66 Aligned_cols=17 Identities=24% Similarity=0.415 Sum_probs=14.6
Q ss_pred CCeEEEcCCCCchhHHh
Q psy7268 77 KSAILVAETGCGKTLSF 93 (134)
Q Consensus 77 ~dvli~a~tGsGKT~~~ 93 (134)
.++++.||+|+|||...
T Consensus 59 ~~~ll~G~~G~GKT~la 75 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTI 75 (353)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 46999999999999664
No 193
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=88.60 E-value=0.27 Score=35.73 Aligned_cols=17 Identities=35% Similarity=0.386 Sum_probs=14.7
Q ss_pred CCeEEEcCCCCchhHHh
Q psy7268 77 KSAILVAETGCGKTLSF 93 (134)
Q Consensus 77 ~dvli~a~tGsGKT~~~ 93 (134)
..+++.||+|+|||...
T Consensus 48 ~~~ll~G~~GtGKt~la 64 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELA 64 (311)
T ss_dssp EEEEEESCSSSSHHHHH
T ss_pred eEEEEECCCCcCHHHHH
Confidence 36999999999999765
No 194
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=88.54 E-value=0.22 Score=37.97 Aligned_cols=18 Identities=28% Similarity=0.462 Sum_probs=15.7
Q ss_pred CCCeEEEcCCCCchhHHh
Q psy7268 76 GKSAILVAETGCGKTLSF 93 (134)
Q Consensus 76 g~dvli~a~tGsGKT~~~ 93 (134)
.+.+++.||+|+|||...
T Consensus 148 ~~~vLL~GppGtGKT~la 165 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLA 165 (389)
T ss_dssp CSEEEEESSTTSCHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 468999999999999764
No 195
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=88.53 E-value=0.24 Score=33.15 Aligned_cols=18 Identities=28% Similarity=0.375 Sum_probs=15.2
Q ss_pred CCCeEEEcCCCCchhHHh
Q psy7268 76 GKSAILVAETGCGKTLSF 93 (134)
Q Consensus 76 g~dvli~a~tGsGKT~~~ 93 (134)
|.-+++.|++|+|||...
T Consensus 3 ~~~I~i~G~~GsGKsT~~ 20 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSS 20 (192)
T ss_dssp CCEEEEECCTTSCHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 566899999999999753
No 196
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=88.49 E-value=0.58 Score=32.65 Aligned_cols=22 Identities=32% Similarity=0.392 Sum_probs=17.8
Q ss_pred HcCCCeEEEcCCCCchhHHhHH
Q psy7268 74 LSGKSAILVAETGCGKTLSFLA 95 (134)
Q Consensus 74 ~~g~dvli~a~tGsGKT~~~~l 95 (134)
-.|.-+.+.||+|+|||.....
T Consensus 28 ~~G~~~~l~GpnGsGKSTLl~~ 49 (251)
T 2ehv_A 28 PEGTTVLLTGGTGTGKTTFAAQ 49 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHH
Confidence 3677899999999999976543
No 197
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=88.48 E-value=0.41 Score=36.88 Aligned_cols=24 Identities=29% Similarity=0.531 Sum_probs=18.9
Q ss_pred HHHHHcCCC--eEEEcCCCCchhHHh
Q psy7268 70 IPTLLSGKS--AILVAETGCGKTLSF 93 (134)
Q Consensus 70 i~~~~~g~d--vli~a~tGsGKT~~~ 93 (134)
+..++.|.+ ++.-|.||||||...
T Consensus 94 v~~~l~G~n~tifAYGqTGSGKTyTM 119 (372)
T 3b6u_A 94 VDSVLQGFNGTIFAYGQTGTGKTYTM 119 (372)
T ss_dssp HHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHhCCCeeeEEeecCCCCCCCEeE
Confidence 344668887 677899999999874
No 198
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=88.47 E-value=0.43 Score=36.62 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=18.6
Q ss_pred HHHHcCCC--eEEEcCCCCchhHHh
Q psy7268 71 PTLLSGKS--AILVAETGCGKTLSF 93 (134)
Q Consensus 71 ~~~~~g~d--vli~a~tGsGKT~~~ 93 (134)
..++.|.+ ++.-|.||||||...
T Consensus 78 ~~~l~G~n~tifAYGqTGSGKTyTm 102 (365)
T 2y65_A 78 TDVLAGYNGTIFAYGQTSSGKTHTM 102 (365)
T ss_dssp HHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHhCCCceEEEeecCCCCCCceEE
Confidence 34568887 677899999999885
No 199
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=88.43 E-value=0.44 Score=36.37 Aligned_cols=23 Identities=30% Similarity=0.501 Sum_probs=18.5
Q ss_pred HHHHcCCC--eEEEcCCCCchhHHh
Q psy7268 71 PTLLSGKS--AILVAETGCGKTLSF 93 (134)
Q Consensus 71 ~~~~~g~d--vli~a~tGsGKT~~~ 93 (134)
..++.|.+ ++.-|.||||||...
T Consensus 83 ~~~l~G~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 83 DAVLEGFNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp HHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHhCCCceeEEeecCCCCCCCEEe
Confidence 34568887 777899999999885
No 200
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=88.41 E-value=0.21 Score=36.56 Aligned_cols=42 Identities=14% Similarity=0.082 Sum_probs=26.8
Q ss_pred CcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHH----HcCCCeEEEcCCCCchhHHh
Q psy7268 40 TFEDTGLAPEIIDIFTKRGLTTPTEIQKYSIPTL----LSGKSAILVAETGCGKTLSF 93 (134)
Q Consensus 40 ~f~~~~l~~~i~~~l~~~g~~~~t~iQ~~~i~~~----~~g~dvli~a~tGsGKT~~~ 93 (134)
+|+++--.+..++.+.+. +..+ .....+++.||+|+|||...
T Consensus 10 ~~~~~ig~~~~~~~l~~~------------l~~~~~~~~~~~~vll~G~~GtGKT~la 55 (324)
T 1hqc_A 10 TLDEYIGQERLKQKLRVY------------LEAAKARKEPLEHLLLFGPPGLGKTTLA 55 (324)
T ss_dssp STTTCCSCHHHHHHHHHH------------HHHHHHHCSCCCCCEEECCTTCCCHHHH
T ss_pred cHHHhhCHHHHHHHHHHH------------HHHHHccCCCCCcEEEECCCCCCHHHHH
Confidence 666665566666555431 1111 13367999999999999764
No 201
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=88.39 E-value=0.23 Score=35.77 Aligned_cols=15 Identities=27% Similarity=0.200 Sum_probs=12.9
Q ss_pred eEEEcCCCCchhHHh
Q psy7268 79 AILVAETGCGKTLSF 93 (134)
Q Consensus 79 vli~a~tGsGKT~~~ 93 (134)
+++.||+|||||...
T Consensus 4 i~I~G~~GSGKSTla 18 (253)
T 2ze6_A 4 HLIYGPTCSGKTDMA 18 (253)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCcCHHHHH
Confidence 678999999999764
No 202
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=88.39 E-value=0.45 Score=36.00 Aligned_cols=26 Identities=23% Similarity=0.405 Sum_probs=21.0
Q ss_pred HHHHHHHcCCC--eEEEcCCCCchhHHh
Q psy7268 68 YSIPTLLSGKS--AILVAETGCGKTLSF 93 (134)
Q Consensus 68 ~~i~~~~~g~d--vli~a~tGsGKT~~~ 93 (134)
..+..++.|.| ++.-|.||||||...
T Consensus 71 ~lv~~~l~G~n~tifAYGqTGSGKTyTm 98 (330)
T 2h58_A 71 ALVTSCIDGFNVCIFAYGQTGAGKTYTM 98 (330)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHhCCCEEEEEeECCCCCCCcEEE
Confidence 35566789987 777899999999875
No 203
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=88.35 E-value=0.45 Score=36.54 Aligned_cols=24 Identities=21% Similarity=0.457 Sum_probs=19.1
Q ss_pred HHHHHcCCC--eEEEcCCCCchhHHh
Q psy7268 70 IPTLLSGKS--AILVAETGCGKTLSF 93 (134)
Q Consensus 70 i~~~~~g~d--vli~a~tGsGKT~~~ 93 (134)
+..++.|.+ ++.-|.||||||...
T Consensus 82 v~~~l~G~N~tifAYGqTGSGKTyTm 107 (366)
T 2zfi_A 82 LQHAFEGYNVCIFAYGQTGAGKSYTM 107 (366)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhcCCeeEEEEeCCCCCCCceEe
Confidence 345668887 777899999999875
No 204
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=88.33 E-value=0.21 Score=33.29 Aligned_cols=18 Identities=22% Similarity=0.325 Sum_probs=15.1
Q ss_pred CCCeEEEcCCCCchhHHh
Q psy7268 76 GKSAILVAETGCGKTLSF 93 (134)
Q Consensus 76 g~dvli~a~tGsGKT~~~ 93 (134)
|.-+.+.|++|+|||...
T Consensus 8 g~~i~l~G~~GsGKSTl~ 25 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVA 25 (175)
T ss_dssp SEEEEEECSTTSCHHHHH
T ss_pred CcEEEEEcCCCCCHHHHH
Confidence 556889999999999764
No 205
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=88.28 E-value=0.25 Score=33.47 Aligned_cols=19 Identities=26% Similarity=0.412 Sum_probs=16.1
Q ss_pred cCCCeEEEcCCCCchhHHh
Q psy7268 75 SGKSAILVAETGCGKTLSF 93 (134)
Q Consensus 75 ~g~dvli~a~tGsGKT~~~ 93 (134)
.+..+++.|++|+|||...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~ 27 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMA 27 (184)
T ss_dssp SSCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4667999999999999764
No 206
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=88.28 E-value=0.42 Score=36.56 Aligned_cols=23 Identities=26% Similarity=0.543 Sum_probs=18.5
Q ss_pred HHHHcCCC--eEEEcCCCCchhHHh
Q psy7268 71 PTLLSGKS--AILVAETGCGKTLSF 93 (134)
Q Consensus 71 ~~~~~g~d--vli~a~tGsGKT~~~ 93 (134)
..++.|.+ ++.-|.||||||...
T Consensus 74 ~~~l~G~n~tifAYGqTGSGKTyTm 98 (355)
T 1goj_A 74 DDILNGYNGTVFAYGQTGAGKSYTM 98 (355)
T ss_dssp HHHTTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHhCCCcceEEEECCCCCCcceEe
Confidence 34568887 777899999999885
No 207
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=88.19 E-value=0.44 Score=36.42 Aligned_cols=25 Identities=20% Similarity=0.424 Sum_probs=19.7
Q ss_pred HHHHHHcCCC--eEEEcCCCCchhHHh
Q psy7268 69 SIPTLLSGKS--AILVAETGCGKTLSF 93 (134)
Q Consensus 69 ~i~~~~~g~d--vli~a~tGsGKT~~~ 93 (134)
.+..++.|.| ++.-|.||||||...
T Consensus 84 lv~~~l~G~n~tifAYGqTGSGKTyTm 110 (354)
T 3gbj_A 84 ILQNAFDGYNACIFAYGQTGSGKSYTM 110 (354)
T ss_dssp HHHHHHTTCCEEEEEEECTTSSHHHHH
T ss_pred HHHHHhCCceeEEEeeCCCCCCCceEE
Confidence 3445668987 677799999999886
No 208
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=88.18 E-value=0.84 Score=37.15 Aligned_cols=27 Identities=22% Similarity=0.351 Sum_probs=19.5
Q ss_pred CCCeEEEcCCCCchhHHhHHHHHHHHH
Q psy7268 76 GKSAILVAETGCGKTLSFLAPLVQQIL 102 (134)
Q Consensus 76 g~dvli~a~tGsGKT~~~~lpil~~~~ 102 (134)
..+++|.|.||||||.+.-.-++..+.
T Consensus 214 ~pHlLIaG~TGSGKS~~L~tlI~sLl~ 240 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVGVNAMLLSILF 240 (574)
T ss_dssp SCCEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCeeEEECCCCCCHHHHHHHHHHHHHH
Confidence 357999999999999775444444443
No 209
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=88.18 E-value=0.22 Score=39.51 Aligned_cols=51 Identities=33% Similarity=0.393 Sum_probs=31.7
Q ss_pred CCCcccCCCCHHHHHHHHHC--CCCCChHHHHHHHHHH--HcCCCeEEEcCCCCchhHHh
Q psy7268 38 LGTFEDTGLAPEIIDIFTKR--GLTTPTEIQKYSIPTL--LSGKSAILVAETGCGKTLSF 93 (134)
Q Consensus 38 ~~~f~~~~l~~~i~~~l~~~--g~~~~t~iQ~~~i~~~--~~g~dvli~a~tGsGKT~~~ 93 (134)
-.+|+++.-.++..+.+.+. .+..+.. +..+ .-.+.+++.||+|+|||+..
T Consensus 12 ~~~f~di~G~~~~~~~l~e~v~~l~~~~~-----~~~~g~~~p~gvLL~GppGtGKT~La 66 (476)
T 2ce7_A 12 RVTFKDVGGAEEAIEELKEVVEFLKDPSK-----FNRIGARMPKGILLVGPPGTGKTLLA 66 (476)
T ss_dssp CCCGGGCCSCHHHHHHHHHHHHHHHCTHH-----HHTTTCCCCSEEEEECCTTSSHHHHH
T ss_pred CCCHHHhCCcHHHHHHHHHHHHHhhChHH-----HhhcCCCCCCeEEEECCCCCCHHHHH
Confidence 34788888778877777663 1111111 1111 11346999999999999764
No 210
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=88.18 E-value=0.25 Score=32.51 Aligned_cols=16 Identities=25% Similarity=0.160 Sum_probs=13.4
Q ss_pred CeEEEcCCCCchhHHh
Q psy7268 78 SAILVAETGCGKTLSF 93 (134)
Q Consensus 78 dvli~a~tGsGKT~~~ 93 (134)
-+++.|++|+|||...
T Consensus 3 ~i~l~G~~GsGKsT~~ 18 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVA 18 (173)
T ss_dssp EEEEECSSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3788999999999764
No 211
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=88.09 E-value=0.45 Score=36.43 Aligned_cols=24 Identities=29% Similarity=0.535 Sum_probs=18.9
Q ss_pred HHHHHcCCC--eEEEcCCCCchhHHh
Q psy7268 70 IPTLLSGKS--AILVAETGCGKTLSF 93 (134)
Q Consensus 70 i~~~~~g~d--vli~a~tGsGKT~~~ 93 (134)
+..++.|.+ ++.-|.||||||...
T Consensus 96 v~~~l~G~N~tIfAYGqTGSGKTyTM 121 (358)
T 2nr8_A 96 VSQALDGYNGTIMCYGQTGAGKTYTM 121 (358)
T ss_dssp HHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHhCCCceEEEEECCCCCCCceEe
Confidence 345568887 677799999999885
No 212
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=88.08 E-value=0.45 Score=36.28 Aligned_cols=24 Identities=25% Similarity=0.426 Sum_probs=19.3
Q ss_pred HHHHHcCCC--eEEEcCCCCchhHHh
Q psy7268 70 IPTLLSGKS--AILVAETGCGKTLSF 93 (134)
Q Consensus 70 i~~~~~g~d--vli~a~tGsGKT~~~ 93 (134)
+..++.|.+ ++.-|.||||||...
T Consensus 70 v~~~l~G~n~tifAYGqTGSGKTyTM 95 (349)
T 1t5c_A 70 IDSAIQGYNGTIFAYGQTASGKTYTM 95 (349)
T ss_dssp HHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHcCCccceeeecCCCCCCCeEE
Confidence 345668887 777899999999886
No 213
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=88.05 E-value=0.75 Score=34.86 Aligned_cols=27 Identities=30% Similarity=0.332 Sum_probs=18.7
Q ss_pred cCCCeEEEcCCCCchhHHhHHHHHHHHH
Q psy7268 75 SGKSAILVAETGCGKTLSFLAPLVQQIL 102 (134)
Q Consensus 75 ~g~dvli~a~tGsGKT~~~~lpil~~~~ 102 (134)
.|.=+++.|++|+|||... +-++..+.
T Consensus 45 ~G~LiiIaG~pG~GKTt~a-l~ia~~~a 71 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLM-MNMVLSAL 71 (338)
T ss_dssp TTCEEEEEECTTSCHHHHH-HHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHH-HHHHHHHH
Confidence 4555889999999999654 44444443
No 214
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=88.05 E-value=0.44 Score=36.44 Aligned_cols=23 Identities=30% Similarity=0.538 Sum_probs=18.5
Q ss_pred HHHHcCCC--eEEEcCCCCchhHHh
Q psy7268 71 PTLLSGKS--AILVAETGCGKTLSF 93 (134)
Q Consensus 71 ~~~~~g~d--vli~a~tGsGKT~~~ 93 (134)
..++.|.+ ++.-|.||||||...
T Consensus 99 ~~~l~G~n~tifAYGqTGSGKTyTm 123 (355)
T 3lre_A 99 RSFLNGYNCTVLAYGATGAGKTHTM 123 (355)
T ss_dssp HHHTTTCCEEEEEECCTTSSHHHHH
T ss_pred HHHhCCCceEEEEeCCCCCCceeee
Confidence 34568887 677899999999885
No 215
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=88.02 E-value=0.28 Score=34.35 Aligned_cols=20 Identities=20% Similarity=0.400 Sum_probs=16.5
Q ss_pred HcCCCeEEEcCCCCchhHHh
Q psy7268 74 LSGKSAILVAETGCGKTLSF 93 (134)
Q Consensus 74 ~~g~dvli~a~tGsGKT~~~ 93 (134)
..|+-+++.||+|+|||...
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~ 36 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIK 36 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHH
T ss_pred CCCCEEEEECcCCCCHHHHH
Confidence 36778999999999999653
No 216
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=87.99 E-value=1 Score=33.24 Aligned_cols=43 Identities=12% Similarity=0.132 Sum_probs=29.1
Q ss_pred CCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCeEEEcCCCCchhHHh
Q psy7268 39 GTFEDTGLAPEIIDIFTKRGLTTPTEIQKYSIPTLLSGKSAILVAETGCGKTLSF 93 (134)
Q Consensus 39 ~~f~~~~l~~~i~~~l~~~g~~~~t~iQ~~~i~~~~~g~dvli~a~tGsGKT~~~ 93 (134)
.+|+++--++.+.+.+.+.=+.. -...++++.||+|+|||...
T Consensus 11 ~~~~~~vg~~~~~~~l~~~~~~~------------~~~~~~ll~Gp~G~GKTtl~ 53 (354)
T 1sxj_E 11 KSLNALSHNEELTNFLKSLSDQP------------RDLPHLLLYGPNGTGKKTRC 53 (354)
T ss_dssp CSGGGCCSCHHHHHHHHTTTTCT------------TCCCCEEEECSTTSSHHHHH
T ss_pred CCHHHhcCCHHHHHHHHHHHhhC------------CCCCeEEEECCCCCCHHHHH
Confidence 46777777788887777631111 12234999999999999764
No 217
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=87.95 E-value=0.21 Score=38.23 Aligned_cols=20 Identities=20% Similarity=0.280 Sum_probs=16.6
Q ss_pred HcCCCeEEEcCCCCchhHHh
Q psy7268 74 LSGKSAILVAETGCGKTLSF 93 (134)
Q Consensus 74 ~~g~dvli~a~tGsGKT~~~ 93 (134)
..|.-+++.||||+|||...
T Consensus 134 ~~g~~i~ivG~~GsGKTTll 153 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTI 153 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 35677999999999999664
No 218
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=87.95 E-value=0.54 Score=36.55 Aligned_cols=25 Identities=28% Similarity=0.492 Sum_probs=20.5
Q ss_pred HHHHHHcCCC--eEEEcCCCCchhHHh
Q psy7268 69 SIPTLLSGKS--AILVAETGCGKTLSF 93 (134)
Q Consensus 69 ~i~~~~~g~d--vli~a~tGsGKT~~~ 93 (134)
.+..++.|.| ++.-|.||||||...
T Consensus 132 lv~~~l~G~N~tifAYGqTGSGKTyTM 158 (403)
T 4etp_A 132 LVQSSLDGYNVAIFAYGQTGSGKTFTM 158 (403)
T ss_dssp HHHHHHTTCCEEEEEESCTTSSHHHHH
T ss_pred HHHHHhCCcceEEEEECCCCCCCceEe
Confidence 5566778987 677799999999886
No 219
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=87.90 E-value=0.67 Score=35.43 Aligned_cols=26 Identities=23% Similarity=0.225 Sum_probs=18.3
Q ss_pred CCCeEEEcCCCCchhHHhHHHHHHHHH
Q psy7268 76 GKSAILVAETGCGKTLSFLAPLVQQIL 102 (134)
Q Consensus 76 g~dvli~a~tGsGKT~~~~lpil~~~~ 102 (134)
|.-+++.+++|+|||... +.++....
T Consensus 74 G~li~I~G~pGsGKTtla-l~la~~~~ 99 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLA-LAIVAQAQ 99 (366)
T ss_dssp TSEEEEEESTTSSHHHHH-HHHHHHHH
T ss_pred CcEEEEEcCCCCChHHHH-HHHHHHHH
Confidence 456888999999999654 44444443
No 220
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=87.83 E-value=0.17 Score=37.41 Aligned_cols=19 Identities=16% Similarity=0.358 Sum_probs=15.8
Q ss_pred cCCCeEEEcCCCCchhHHh
Q psy7268 75 SGKSAILVAETGCGKTLSF 93 (134)
Q Consensus 75 ~g~dvli~a~tGsGKT~~~ 93 (134)
...++++.||+|+|||...
T Consensus 44 ~~~~vLl~G~~GtGKT~la 62 (350)
T 1g8p_A 44 GIGGVLVFGDRGTGKSTAV 62 (350)
T ss_dssp GGCCEEEECCGGGCTTHHH
T ss_pred CCceEEEECCCCccHHHHH
Confidence 3457999999999999764
No 221
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=87.62 E-value=0.44 Score=36.47 Aligned_cols=25 Identities=24% Similarity=0.466 Sum_probs=19.3
Q ss_pred HHHHHHcCCC--eEEEcCCCCchhHHh
Q psy7268 69 SIPTLLSGKS--AILVAETGCGKTLSF 93 (134)
Q Consensus 69 ~i~~~~~g~d--vli~a~tGsGKT~~~ 93 (134)
.+..++.|.+ ++.-|.||||||...
T Consensus 80 lv~~~l~G~n~tifAYGqTGSGKTyTM 106 (359)
T 1x88_A 80 ILDEVIMGYNCTIFAYGQTGTGKTFTM 106 (359)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hHHHHhCCCceEEEEeCCCCCCCceEE
Confidence 3445668887 677899999999864
No 222
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=87.61 E-value=0.45 Score=37.14 Aligned_cols=26 Identities=31% Similarity=0.431 Sum_probs=21.0
Q ss_pred HHHHHHHcCCC--eEEEcCCCCchhHHh
Q psy7268 68 YSIPTLLSGKS--AILVAETGCGKTLSF 93 (134)
Q Consensus 68 ~~i~~~~~g~d--vli~a~tGsGKT~~~ 93 (134)
..+..++.|.+ ++.-|.||||||...
T Consensus 129 plv~~~l~G~n~tifAYGqTGSGKTyTM 156 (412)
T 3u06_A 129 PLIQSALDGYNICIFAYGQTGSGKTYTM 156 (412)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHHCCCceEEEEecCCCCCCeeEe
Confidence 35667789987 677799999999885
No 223
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=87.47 E-value=0.47 Score=36.54 Aligned_cols=23 Identities=30% Similarity=0.502 Sum_probs=18.3
Q ss_pred HHHHcCCC--eEEEcCCCCchhHHh
Q psy7268 71 PTLLSGKS--AILVAETGCGKTLSF 93 (134)
Q Consensus 71 ~~~~~g~d--vli~a~tGsGKT~~~ 93 (134)
..++.|.+ ++.-|.||||||...
T Consensus 94 ~~~l~G~n~tifAYGqTGSGKTyTm 118 (373)
T 2wbe_C 94 EEVLNGYNCTVFAYGQTGTGKTHTM 118 (373)
T ss_dssp HHHHHTCCEEEEEECSTTSSHHHHH
T ss_pred HHHhCCceEEEEeecCCCCCcceec
Confidence 34567887 777899999999874
No 224
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=87.44 E-value=0.65 Score=35.47 Aligned_cols=26 Identities=15% Similarity=0.203 Sum_probs=18.4
Q ss_pred CCCeEEEcCCCCchhHHhHHHHHHHHH
Q psy7268 76 GKSAILVAETGCGKTLSFLAPLVQQIL 102 (134)
Q Consensus 76 g~dvli~a~tGsGKT~~~~lpil~~~~ 102 (134)
|.-+++.+|+|+|||... +.++..+.
T Consensus 61 G~i~~I~GppGsGKSTLa-l~la~~~~ 86 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLA-LHAIAEAQ 86 (356)
T ss_dssp TEEEEEEESTTSSHHHHH-HHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHH-HHHHHHHH
Confidence 556889999999999654 44444443
No 225
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=87.43 E-value=0.85 Score=33.69 Aligned_cols=18 Identities=39% Similarity=0.610 Sum_probs=14.8
Q ss_pred CCCeEEEcCCCCchhHHh
Q psy7268 76 GKSAILVAETGCGKTLSF 93 (134)
Q Consensus 76 g~dvli~a~tGsGKT~~~ 93 (134)
|+-+++.|++|+|||...
T Consensus 105 g~vi~lvG~~GsGKTTl~ 122 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTL 122 (296)
T ss_dssp SSEEEEEESTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 445888999999999765
No 226
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=87.37 E-value=0.24 Score=37.75 Aligned_cols=27 Identities=19% Similarity=0.370 Sum_probs=18.9
Q ss_pred cCCCeEEEcCCCCchhHHhHHHHHHHHH
Q psy7268 75 SGKSAILVAETGCGKTLSFLAPLVQQIL 102 (134)
Q Consensus 75 ~g~dvli~a~tGsGKT~~~~lpil~~~~ 102 (134)
.|.-+++.||||||||... -.++..+.
T Consensus 122 ~~g~i~I~GptGSGKTTlL-~~l~g~~~ 148 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTL-AAMLDYLN 148 (356)
T ss_dssp SSEEEEEECSTTSCHHHHH-HHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH-HHHHhccc
Confidence 4557899999999999654 33444443
No 227
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=87.19 E-value=0.42 Score=36.78 Aligned_cols=25 Identities=24% Similarity=0.466 Sum_probs=20.4
Q ss_pred HHHHHHcCCC--eEEEcCCCCchhHHh
Q psy7268 69 SIPTLLSGKS--AILVAETGCGKTLSF 93 (134)
Q Consensus 69 ~i~~~~~g~d--vli~a~tGsGKT~~~ 93 (134)
.+..++.|.+ ++.-|.||||||...
T Consensus 71 lv~~~l~G~n~tifAYGqTGSGKTyTM 97 (369)
T 3cob_A 71 LVQSAVDGYNVCIFAYGQTGSGKTFTI 97 (369)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hhHhhhcCCceEEEEECCCCCCCeEee
Confidence 4556778987 677899999999885
No 228
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=87.09 E-value=0.55 Score=36.65 Aligned_cols=24 Identities=29% Similarity=0.558 Sum_probs=18.9
Q ss_pred HHHHHcCCC--eEEEcCCCCchhHHh
Q psy7268 70 IPTLLSGKS--AILVAETGCGKTLSF 93 (134)
Q Consensus 70 i~~~~~g~d--vli~a~tGsGKT~~~ 93 (134)
+..++.|.+ ++.-|.||||||...
T Consensus 147 V~~~l~G~N~tifAYGQTGSGKTyTM 172 (410)
T 1v8k_A 147 VQTIFEGGKATCFAYGQTGSGKTHTM 172 (410)
T ss_dssp HHHHHTTCEEEEEEEESTTSSHHHHH
T ss_pred HHHHhcCCceeEEeecCCCCCCCeEe
Confidence 344668886 777899999999875
No 229
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=87.05 E-value=0.22 Score=33.39 Aligned_cols=19 Identities=26% Similarity=0.503 Sum_probs=15.6
Q ss_pred cCCCeEEEcCCCCchhHHh
Q psy7268 75 SGKSAILVAETGCGKTLSF 93 (134)
Q Consensus 75 ~g~dvli~a~tGsGKT~~~ 93 (134)
.|..+++.|++|||||...
T Consensus 3 ~g~~I~l~G~~GsGKST~~ 21 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQA 21 (186)
T ss_dssp CEEEEEEECCTTSCHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 4556899999999999764
No 230
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=86.99 E-value=0.96 Score=32.82 Aligned_cols=21 Identities=19% Similarity=0.336 Sum_probs=17.0
Q ss_pred HcCCCeEEEcCCCCchhHHhH
Q psy7268 74 LSGKSAILVAETGCGKTLSFL 94 (134)
Q Consensus 74 ~~g~dvli~a~tGsGKT~~~~ 94 (134)
..|.-+++.|++|+|||....
T Consensus 33 ~~G~~~~i~G~~G~GKTTl~~ 53 (296)
T 1cr0_A 33 RGGEVIMVTSGSGMGKSTFVR 53 (296)
T ss_dssp CTTCEEEEEESTTSSHHHHHH
T ss_pred CCCeEEEEEeCCCCCHHHHHH
Confidence 357778999999999996653
No 231
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=86.91 E-value=0.88 Score=34.46 Aligned_cols=23 Identities=22% Similarity=0.287 Sum_probs=17.4
Q ss_pred cCCCeEEEcCCCCchhHHhHHHH
Q psy7268 75 SGKSAILVAETGCGKTLSFLAPL 97 (134)
Q Consensus 75 ~g~dvli~a~tGsGKT~~~~lpi 97 (134)
.|+-+++.+++|+|||...+.-+
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la 82 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAV 82 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 35668999999999997654433
No 232
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=86.85 E-value=0.45 Score=34.43 Aligned_cols=20 Identities=45% Similarity=0.531 Sum_probs=17.5
Q ss_pred HcCCCeEEEcCCCCchhHHh
Q psy7268 74 LSGKSAILVAETGCGKTLSF 93 (134)
Q Consensus 74 ~~g~dvli~a~tGsGKT~~~ 93 (134)
+.|+.+++.|++|+|||...
T Consensus 46 l~g~~i~l~G~~GsGKSTl~ 65 (250)
T 3nwj_A 46 LNGRSMYLVGMMGSGKTTVG 65 (250)
T ss_dssp HTTCCEEEECSTTSCHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 35999999999999999774
No 233
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=86.84 E-value=0.34 Score=36.67 Aligned_cols=16 Identities=31% Similarity=0.320 Sum_probs=13.2
Q ss_pred CeEEEcCCCCchhHHh
Q psy7268 78 SAILVAETGCGKTLSF 93 (134)
Q Consensus 78 dvli~a~tGsGKT~~~ 93 (134)
-+++.||||+|||...
T Consensus 5 ~i~i~GptgsGKt~la 20 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTS 20 (322)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCcCCHHHHH
Confidence 4678999999999654
No 234
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=86.83 E-value=0.48 Score=36.08 Aligned_cols=25 Identities=28% Similarity=0.465 Sum_probs=20.2
Q ss_pred HHHHHHcCCC--eEEEcCCCCchhHHh
Q psy7268 69 SIPTLLSGKS--AILVAETGCGKTLSF 93 (134)
Q Consensus 69 ~i~~~~~g~d--vli~a~tGsGKT~~~ 93 (134)
.+..++.|.| ++.-|.||||||...
T Consensus 77 lv~~~l~G~n~tifAYGqTGSGKTyTm 103 (349)
T 3t0q_A 77 LVQSSLDGYNVCIFAYGQTGSGKTYTM 103 (349)
T ss_dssp HHHGGGTTCEEEEEEECSTTSSHHHHH
T ss_pred HHHHHHCCcceeEEEeCCCCCCCceEe
Confidence 4556678987 677899999999876
No 235
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=86.82 E-value=0.34 Score=36.56 Aligned_cols=15 Identities=33% Similarity=0.348 Sum_probs=12.8
Q ss_pred eEEEcCCCCchhHHh
Q psy7268 79 AILVAETGCGKTLSF 93 (134)
Q Consensus 79 vli~a~tGsGKT~~~ 93 (134)
+++.||||+|||...
T Consensus 13 i~i~GptgsGKt~la 27 (316)
T 3foz_A 13 IFLMGPTASGKTALA 27 (316)
T ss_dssp EEEECCTTSCHHHHH
T ss_pred EEEECCCccCHHHHH
Confidence 678999999999654
No 236
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=86.81 E-value=0.31 Score=38.00 Aligned_cols=54 Identities=11% Similarity=0.052 Sum_probs=31.0
Q ss_pred CCCCcccCCCCHHHHHHHHHCCCCCChHHHHH-HHH-HHHcCCCeEEEcCCCCchhHHh
Q psy7268 37 DLGTFEDTGLAPEIIDIFTKRGLTTPTEIQKY-SIP-TLLSGKSAILVAETGCGKTLSF 93 (134)
Q Consensus 37 ~~~~f~~~~l~~~i~~~l~~~g~~~~t~iQ~~-~i~-~~~~g~dvli~a~tGsGKT~~~ 93 (134)
+-.+|+++.-.+...+.|.+.-. .|+... .+. .....+.+++.||+|+|||...
T Consensus 129 ~~~~~~di~G~~~~k~~l~~~v~---~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA 184 (444)
T 2zan_A 129 PNVKWSDVAGLEGAKEALKEAVI---LPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLA 184 (444)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHT---HHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHH
T ss_pred CCCCHHHhcCHHHHHHHHHHHHH---HHhhCHHHhhccCCCCceEEEECCCCCCHHHHH
Confidence 34568887777777777765210 010000 000 0112367999999999999764
No 237
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=86.78 E-value=0.34 Score=36.89 Aligned_cols=17 Identities=35% Similarity=0.431 Sum_probs=14.2
Q ss_pred CCeEEEcCCCCchhHHh
Q psy7268 77 KSAILVAETGCGKTLSF 93 (134)
Q Consensus 77 ~dvli~a~tGsGKT~~~ 93 (134)
+-+++.||||+|||...
T Consensus 41 ~lIvI~GPTgsGKTtLa 57 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLS 57 (339)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 45889999999999654
No 238
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=86.74 E-value=0.55 Score=36.36 Aligned_cols=24 Identities=29% Similarity=0.558 Sum_probs=18.9
Q ss_pred HHHHHcCCC--eEEEcCCCCchhHHh
Q psy7268 70 IPTLLSGKS--AILVAETGCGKTLSF 93 (134)
Q Consensus 70 i~~~~~g~d--vli~a~tGsGKT~~~ 93 (134)
+..++.|.+ ++.-|.||||||...
T Consensus 127 v~~~l~G~N~tifAYGQTGSGKTyTM 152 (387)
T 2heh_A 127 VQTIFEGGKATCFAYGQTGSGKTHTM 152 (387)
T ss_dssp HHHHHTTCEEEEEEESCTTSSHHHHH
T ss_pred HHHHhcCCceEEEEecCCCCCCCeEe
Confidence 344668886 777899999999874
No 239
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=86.67 E-value=0.77 Score=40.04 Aligned_cols=39 Identities=18% Similarity=0.354 Sum_probs=27.2
Q ss_pred EEEcCCCCchhHHhHHHHHHHHHhhcCCCCCCCCCCCcEEEEEcCcHH
Q psy7268 80 ILVAETGCGKTLSFLAPLVQQILTWKSRPEYKPELNAPLALIITPGRE 127 (134)
Q Consensus 80 li~a~tGsGKT~~~~lpil~~~~~~~~~~~~~~~~~~~~~lil~Pt~~ 127 (134)
+|.|..|||||.+.+-=+...+.. .. .+.++++++|...
T Consensus 5 lV~agAGSGKT~~l~~ri~~ll~~-~~--------~~~~il~lVP~q~ 43 (1166)
T 3u4q_B 5 FLVGRSGSGKTKLIINSIQDELRR-AP--------FGKPIIFLVPDQM 43 (1166)
T ss_dssp EEEECTTSSHHHHHHHHHHHHHHH-CT--------TSSCEEEECCGGG
T ss_pred EEEeCCCCChHHHHHHHHHHHHHh-CC--------CCCcEEEEecCcc
Confidence 678999999998876665555543 11 3457899988653
No 240
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=86.63 E-value=0.31 Score=33.46 Aligned_cols=19 Identities=21% Similarity=0.240 Sum_probs=16.0
Q ss_pred cCCCeEEEcCCCCchhHHh
Q psy7268 75 SGKSAILVAETGCGKTLSF 93 (134)
Q Consensus 75 ~g~dvli~a~tGsGKT~~~ 93 (134)
.|.-+.+.|++|+|||...
T Consensus 24 ~g~~i~l~G~sGsGKSTl~ 42 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLA 42 (200)
T ss_dssp CCEEEEEECSTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 5667889999999999764
No 241
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=86.61 E-value=1.6 Score=32.38 Aligned_cols=15 Identities=27% Similarity=0.476 Sum_probs=13.5
Q ss_pred eEEEcCCCCchhHHh
Q psy7268 79 AILVAETGCGKTLSF 93 (134)
Q Consensus 79 vli~a~tGsGKT~~~ 93 (134)
+++.||+|+|||...
T Consensus 49 ~ll~Gp~G~GKTtla 63 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTI 63 (340)
T ss_dssp EEEECSSSSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 899999999999664
No 242
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=86.53 E-value=1.2 Score=31.65 Aligned_cols=37 Identities=14% Similarity=0.202 Sum_probs=23.6
Q ss_pred eEEEcCCCCchhHHhHHHHHHHHHhhcCCCCCCCCCCCcEEEEEcCcHH
Q psy7268 79 AILVAETGCGKTLSFLAPLVQQILTWKSRPEYKPELNAPLALIITPGRE 127 (134)
Q Consensus 79 vli~a~tGsGKT~~~~lpil~~~~~~~~~~~~~~~~~~~~~lil~Pt~~ 127 (134)
.++.++-|+|||... +-.+.+... .+.+++++.|.+.
T Consensus 31 ~vitG~MgsGKTT~l-L~~a~r~~~-----------~g~kVli~k~~~d 67 (214)
T 2j9r_A 31 EVICGSMFSGKSEEL-IRRVRRTQF-----------AKQHAIVFKPCID 67 (214)
T ss_dssp EEEECSTTSCHHHHH-HHHHHHHHH-----------TTCCEEEEECC--
T ss_pred EEEECCCCCcHHHHH-HHHHHHHHH-----------CCCEEEEEEeccC
Confidence 457899999999765 344444433 4567888877643
No 243
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=86.47 E-value=0.79 Score=36.07 Aligned_cols=23 Identities=22% Similarity=0.381 Sum_probs=18.6
Q ss_pred HHHHcCCC--eEEEcCCCCchhHHh
Q psy7268 71 PTLLSGKS--AILVAETGCGKTLSF 93 (134)
Q Consensus 71 ~~~~~g~d--vli~a~tGsGKT~~~ 93 (134)
..++.|.| ++.-|.||||||...
T Consensus 130 ~~~l~GyN~tIfAYGQTGSGKTyTM 154 (443)
T 2owm_A 130 DHNFEGYHTCIFAYGQTGSGKSYTM 154 (443)
T ss_dssp HHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHhhcCCceEEEEeCCCCCCCCEEe
Confidence 34568887 777899999999886
No 244
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=86.37 E-value=0.37 Score=32.53 Aligned_cols=17 Identities=29% Similarity=0.464 Sum_probs=13.8
Q ss_pred CCeEEEcCCCCchhHHh
Q psy7268 77 KSAILVAETGCGKTLSF 93 (134)
Q Consensus 77 ~dvli~a~tGsGKT~~~ 93 (134)
.-+++.||+|+|||...
T Consensus 3 ~ii~l~G~~GaGKSTl~ 19 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTC 19 (189)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCcHHHHH
Confidence 34678999999999764
No 245
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=86.28 E-value=1 Score=34.21 Aligned_cols=22 Identities=23% Similarity=0.219 Sum_probs=17.1
Q ss_pred cCCCeEEEcCCCCchhHHhHHH
Q psy7268 75 SGKSAILVAETGCGKTLSFLAP 96 (134)
Q Consensus 75 ~g~dvli~a~tGsGKT~~~~lp 96 (134)
.|+-+++.+++|+|||...+--
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~l 83 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQV 83 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 3566899999999999766433
No 246
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=86.13 E-value=1 Score=35.02 Aligned_cols=27 Identities=26% Similarity=0.289 Sum_probs=18.4
Q ss_pred cCCCeEEEcCCCCchhHHhHHHHHHHHH
Q psy7268 75 SGKSAILVAETGCGKTLSFLAPLVQQIL 102 (134)
Q Consensus 75 ~g~dvli~a~tGsGKT~~~~lpil~~~~ 102 (134)
.|.-+++.|++|+|||... +-+...+.
T Consensus 199 ~G~l~ii~G~pg~GKT~la-l~ia~~~a 225 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFA-LTIAQNAA 225 (444)
T ss_dssp TTCEEEEEECTTSCHHHHH-HHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHH-HHHHHHHH
Confidence 3455889999999999554 44444443
No 247
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=86.12 E-value=0.38 Score=32.85 Aligned_cols=17 Identities=24% Similarity=0.327 Sum_probs=14.5
Q ss_pred CCeEEEcCCCCchhHHh
Q psy7268 77 KSAILVAETGCGKTLSF 93 (134)
Q Consensus 77 ~dvli~a~tGsGKT~~~ 93 (134)
.-+++.|++|+|||...
T Consensus 19 ~~I~l~G~~GsGKSTla 35 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVG 35 (202)
T ss_dssp SCEEEECSTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46899999999999764
No 248
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=86.09 E-value=0.42 Score=35.43 Aligned_cols=18 Identities=28% Similarity=0.344 Sum_probs=15.5
Q ss_pred CCCeEEEcCCCCchhHHh
Q psy7268 76 GKSAILVAETGCGKTLSF 93 (134)
Q Consensus 76 g~dvli~a~tGsGKT~~~ 93 (134)
+..+++.||+|+|||...
T Consensus 45 ~~~vli~G~~G~GKTtl~ 62 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVV 62 (386)
T ss_dssp CCCEEEEECTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 567999999999999664
No 249
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=86.08 E-value=0.52 Score=37.03 Aligned_cols=26 Identities=38% Similarity=0.543 Sum_probs=18.6
Q ss_pred cCCCeEEEcCCCCchhHHhHHHHHHHH
Q psy7268 75 SGKSAILVAETGCGKTLSFLAPLVQQI 101 (134)
Q Consensus 75 ~g~dvli~a~tGsGKT~~~~lpil~~~ 101 (134)
...++++.||+|+|||... -.+...+
T Consensus 200 ~~~~~LL~G~pG~GKT~la-~~la~~l 225 (468)
T 3pxg_A 200 TKNNPVLIGEPGVGKTAIA-EGLAQQI 225 (468)
T ss_dssp SSCEEEEESCTTTTTHHHH-HHHHHHH
T ss_pred CCCCeEEECCCCCCHHHHH-HHHHHHH
Confidence 3457999999999999765 3334444
No 250
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=86.00 E-value=1.1 Score=35.00 Aligned_cols=26 Identities=23% Similarity=0.262 Sum_probs=18.4
Q ss_pred cCCCeEEEcCCCCchhHHhHHHHHHHH
Q psy7268 75 SGKSAILVAETGCGKTLSFLAPLVQQI 101 (134)
Q Consensus 75 ~g~dvli~a~tGsGKT~~~~lpil~~~ 101 (134)
.|.-+++.|++|+|||... +-++..+
T Consensus 202 ~G~liiI~G~pG~GKTtl~-l~ia~~~ 227 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFA-LNIAQNV 227 (454)
T ss_dssp TTCEEEEECCTTSCHHHHH-HHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH-HHHHHHH
Confidence 4556899999999999655 4444444
No 251
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=85.99 E-value=0.48 Score=36.71 Aligned_cols=32 Identities=28% Similarity=0.404 Sum_probs=23.2
Q ss_pred ChHHHHHHHH--------HHHcCCC--eEEEcCCCCchhHHh
Q psy7268 62 PTEIQKYSIP--------TLLSGKS--AILVAETGCGKTLSF 93 (134)
Q Consensus 62 ~t~iQ~~~i~--------~~~~g~d--vli~a~tGsGKT~~~ 93 (134)
+..-|.+++. .++.|.+ ++.-|.||||||...
T Consensus 75 ~~~tQ~~Vy~~~~~plv~~~l~G~N~tifAYGqTGSGKTyTM 116 (388)
T 3bfn_A 75 ERSTQQDIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHTM 116 (388)
T ss_dssp TTCCHHHHHHHHTGGGHHHHTTTCCEEEEEESCTTSSHHHHH
T ss_pred CCCCHhHHHHHHHHHHHHHhhcCceeeEeeecCCCCCCCeEe
Confidence 3445666664 3557887 677899999999875
No 252
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=85.95 E-value=0.53 Score=35.87 Aligned_cols=25 Identities=28% Similarity=0.492 Sum_probs=19.7
Q ss_pred HHHHHHcCCC--eEEEcCCCCchhHHh
Q psy7268 69 SIPTLLSGKS--AILVAETGCGKTLSF 93 (134)
Q Consensus 69 ~i~~~~~g~d--vli~a~tGsGKT~~~ 93 (134)
.+..++.|.| ++.-|.||||||...
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyTM 102 (347)
T 1f9v_A 76 LVQSSLDGYNVCIFAYGQTGSGKTFTM 102 (347)
T ss_dssp HHGGGGGTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHhcCCceeEEEEECCCCCCCcEec
Confidence 4445668887 677899999999875
No 253
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=85.94 E-value=0.36 Score=35.47 Aligned_cols=17 Identities=29% Similarity=0.321 Sum_probs=14.0
Q ss_pred CCeEEEcCCCCchhHHh
Q psy7268 77 KSAILVAETGCGKTLSF 93 (134)
Q Consensus 77 ~dvli~a~tGsGKT~~~ 93 (134)
.-+++.|++|+|||...
T Consensus 34 ~livl~G~sGsGKSTla 50 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLR 50 (287)
T ss_dssp EEEEEECCTTSCTHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 34889999999999654
No 254
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=85.94 E-value=1.4 Score=31.75 Aligned_cols=42 Identities=17% Similarity=0.183 Sum_probs=28.3
Q ss_pred CCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCeEEEcCCCCchhHHh
Q psy7268 39 GTFEDTGLAPEIIDIFTKRGLTTPTEIQKYSIPTLLSGKSAILVAETGCGKTLSF 93 (134)
Q Consensus 39 ~~f~~~~l~~~i~~~l~~~g~~~~t~iQ~~~i~~~~~g~dvli~a~tGsGKT~~~ 93 (134)
.+|+++.-++..++.+.+. +.. -...++++.||+|+|||...
T Consensus 14 ~~~~~~~g~~~~~~~l~~~-l~~------------~~~~~~ll~G~~G~GKt~la 55 (319)
T 2chq_A 14 RTLDEVVGQDEVIQRLKGY-VER------------KNIPHLLFSGPPGTGKTATA 55 (319)
T ss_dssp SSGGGSCSCHHHHHHHHTT-TTT------------TCCCCEEEESSSSSSHHHHH
T ss_pred CCHHHHhCCHHHHHHHHHH-HhC------------CCCCeEEEECcCCcCHHHHH
Confidence 3677776677777777653 111 11225999999999999664
No 255
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=85.88 E-value=0.58 Score=34.87 Aligned_cols=16 Identities=38% Similarity=0.669 Sum_probs=14.3
Q ss_pred CeEEEcCCCCchhHHh
Q psy7268 78 SAILVAETGCGKTLSF 93 (134)
Q Consensus 78 dvli~a~tGsGKT~~~ 93 (134)
.+++.||+|+|||...
T Consensus 46 ~~li~G~~G~GKTtl~ 61 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTL 61 (389)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 7999999999999664
No 256
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=85.80 E-value=1.3 Score=30.22 Aligned_cols=22 Identities=23% Similarity=0.119 Sum_probs=15.1
Q ss_pred eEEEcCCCCchhHHhHHHHHHHH
Q psy7268 79 AILVAETGCGKTLSFLAPLVQQI 101 (134)
Q Consensus 79 vli~a~tGsGKT~~~~lpil~~~ 101 (134)
+.+.+++|+|||... .-++..+
T Consensus 7 i~i~G~sGsGKTTl~-~~L~~~l 28 (169)
T 1xjc_A 7 WQVVGYKHSGKTTLM-EKWVAAA 28 (169)
T ss_dssp EEEECCTTSSHHHHH-HHHHHHH
T ss_pred EEEECCCCCCHHHHH-HHHHHhh
Confidence 678899999999643 3344443
No 257
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=85.75 E-value=0.5 Score=32.33 Aligned_cols=21 Identities=24% Similarity=0.188 Sum_probs=16.6
Q ss_pred cCCCeEEEcCCCCchhHHhHH
Q psy7268 75 SGKSAILVAETGCGKTLSFLA 95 (134)
Q Consensus 75 ~g~dvli~a~tGsGKT~~~~l 95 (134)
.|.-+++.+++|+|||.....
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~ 39 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQ 39 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHH
Confidence 456689999999999976543
No 258
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=85.72 E-value=0.74 Score=37.31 Aligned_cols=23 Identities=22% Similarity=0.366 Sum_probs=19.4
Q ss_pred HHHHcCCCeEEEcCCCCchhHHh
Q psy7268 71 PTLLSGKSAILVAETGCGKTLSF 93 (134)
Q Consensus 71 ~~~~~g~dvli~a~tGsGKT~~~ 93 (134)
..+..|..+++.||+|+|||...
T Consensus 55 ~~i~~g~~vll~Gp~GtGKTtla 77 (604)
T 3k1j_A 55 TAANQKRHVLLIGEPGTGKSMLG 77 (604)
T ss_dssp HHHHTTCCEEEECCTTSSHHHHH
T ss_pred ccccCCCEEEEEeCCCCCHHHHH
Confidence 34568899999999999999665
No 259
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=85.66 E-value=0.35 Score=33.43 Aligned_cols=19 Identities=21% Similarity=0.239 Sum_probs=15.0
Q ss_pred cCCCeEEEcCCCCchhHHh
Q psy7268 75 SGKSAILVAETGCGKTLSF 93 (134)
Q Consensus 75 ~g~dvli~a~tGsGKT~~~ 93 (134)
.|.-+.+.||+|+|||...
T Consensus 21 ~g~~v~I~G~sGsGKSTl~ 39 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLS 39 (208)
T ss_dssp SCEEEEEECCTTSCTHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3556888999999999653
No 260
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=85.64 E-value=0.35 Score=32.49 Aligned_cols=18 Identities=22% Similarity=0.150 Sum_probs=14.7
Q ss_pred CCCeEEEcCCCCchhHHh
Q psy7268 76 GKSAILVAETGCGKTLSF 93 (134)
Q Consensus 76 g~dvli~a~tGsGKT~~~ 93 (134)
+.-+++.|++|+|||...
T Consensus 5 ~~~I~l~G~~GsGKST~~ 22 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLS 22 (193)
T ss_dssp CEEEEEEESTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 445889999999999763
No 261
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=85.56 E-value=0.44 Score=35.54 Aligned_cols=17 Identities=29% Similarity=0.376 Sum_probs=14.8
Q ss_pred CCeEEEcCCCCchhHHh
Q psy7268 77 KSAILVAETGCGKTLSF 93 (134)
Q Consensus 77 ~dvli~a~tGsGKT~~~ 93 (134)
..+++.||+|+|||...
T Consensus 52 ~~~ll~Gp~G~GKTTLa 68 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLA 68 (334)
T ss_dssp CCEEEESSTTSSHHHHH
T ss_pred CeEEEECCCCCcHHHHH
Confidence 57999999999999764
No 262
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=85.49 E-value=0.41 Score=38.04 Aligned_cols=52 Identities=17% Similarity=0.280 Sum_probs=28.3
Q ss_pred CcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHH--HcCCCeEEEcCCCCchhHHh
Q psy7268 40 TFEDTGLAPEIIDIFTKRGLTTPTEIQKYSIPTL--LSGKSAILVAETGCGKTLSF 93 (134)
Q Consensus 40 ~f~~~~l~~~i~~~l~~~g~~~~t~iQ~~~i~~~--~~g~dvli~a~tGsGKT~~~ 93 (134)
+|+++.-....++.+.+. +..+.. ....+..+ ...+.+++.||+|+|||+..
T Consensus 202 ~~~~i~G~~~~~~~l~~~-i~~~l~-~~~~~~~~g~~~~~~vLL~GppGtGKT~lA 255 (489)
T 3hu3_A 202 GYDDIGGCRKQLAQIKEM-VELPLR-HPALFKAIGVKPPRGILLYGPPGTGKTLIA 255 (489)
T ss_dssp CGGGCCSCHHHHHHHHHH-THHHHH-CHHHHHHHTCCCCCEEEEECSTTSSHHHHH
T ss_pred CHHHcCCHHHHHHHHHHH-HHHHhh-CHHHHHhcCCCCCCcEEEECcCCCCHHHHH
Confidence 566666556666666552 100000 01111111 23457999999999999764
No 263
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=85.47 E-value=0.38 Score=34.09 Aligned_cols=19 Identities=21% Similarity=0.487 Sum_probs=15.0
Q ss_pred cCCCeEEEcCCCCchhHHh
Q psy7268 75 SGKSAILVAETGCGKTLSF 93 (134)
Q Consensus 75 ~g~dvli~a~tGsGKT~~~ 93 (134)
.|+-+++.+|||+|||...
T Consensus 33 ~g~~ilI~GpsGsGKStLA 51 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETA 51 (205)
T ss_dssp TTEEEEEECCCTTTTHHHH
T ss_pred CCEEEEEECCCCCCHHHHH
Confidence 3566899999999998443
No 264
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=85.42 E-value=0.5 Score=32.62 Aligned_cols=30 Identities=17% Similarity=0.106 Sum_probs=21.5
Q ss_pred hHHHHHHHHHHHcCCCeEEEcCCCCchhHHh
Q psy7268 63 TEIQKYSIPTLLSGKSAILVAETGCGKTLSF 93 (134)
Q Consensus 63 t~iQ~~~i~~~~~g~dvli~a~tGsGKT~~~ 93 (134)
++.++.. ..+..|.-+++.|++|+|||...
T Consensus 13 ~~~~r~~-~~~~~~~~i~~~G~~GsGKsT~~ 42 (211)
T 1m7g_A 13 TRSERTE-LRNQRGLTIWLTGLSASGKSTLA 42 (211)
T ss_dssp CHHHHHH-HHTSSCEEEEEECSTTSSHHHHH
T ss_pred CHHHhhc-ccCCCCCEEEEECCCCCCHHHHH
Confidence 4454444 34556778999999999999754
No 265
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=85.33 E-value=0.47 Score=33.83 Aligned_cols=18 Identities=22% Similarity=0.459 Sum_probs=15.3
Q ss_pred cCCCeEEEcCCCCchhHH
Q psy7268 75 SGKSAILVAETGCGKTLS 92 (134)
Q Consensus 75 ~g~dvli~a~tGsGKT~~ 92 (134)
.|.-+.+.||+|+|||..
T Consensus 30 ~Ge~~~iiG~nGsGKSTL 47 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTM 47 (235)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCcHHHH
Confidence 577788999999999954
No 266
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=85.18 E-value=0.44 Score=35.59 Aligned_cols=18 Identities=33% Similarity=0.388 Sum_probs=15.1
Q ss_pred CCCeEEEcCCCCchhHHh
Q psy7268 76 GKSAILVAETGCGKTLSF 93 (134)
Q Consensus 76 g~dvli~a~tGsGKT~~~ 93 (134)
++.+++.||+|+|||...
T Consensus 45 ~~~vll~G~~G~GKT~la 62 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVS 62 (384)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 346999999999999664
No 267
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=85.00 E-value=0.39 Score=32.15 Aligned_cols=18 Identities=17% Similarity=0.255 Sum_probs=14.8
Q ss_pred CCCeEEEcCCCCchhHHh
Q psy7268 76 GKSAILVAETGCGKTLSF 93 (134)
Q Consensus 76 g~dvli~a~tGsGKT~~~ 93 (134)
+.-+++.|++|||||...
T Consensus 3 ~~~I~l~G~~GsGKsT~a 20 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQC 20 (196)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 445889999999999764
No 268
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=84.96 E-value=0.57 Score=36.11 Aligned_cols=24 Identities=29% Similarity=0.547 Sum_probs=18.9
Q ss_pred HHHHHcCCC--eEEEcCCCCchhHHh
Q psy7268 70 IPTLLSGKS--AILVAETGCGKTLSF 93 (134)
Q Consensus 70 i~~~~~g~d--vli~a~tGsGKT~~~ 93 (134)
+..++.|.+ ++.-|.||||||...
T Consensus 108 v~~~l~G~N~tifAYGqTGSGKTyTM 133 (376)
T 2rep_A 108 VQSALDGYPVCIFAYGQTGSGKTFTM 133 (376)
T ss_dssp HHGGGGTCCEEEEEECSTTSSHHHHH
T ss_pred HHHhcCCCceEEEEeCCCCCCCceEe
Confidence 344568887 677799999999875
No 269
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=84.92 E-value=0.57 Score=32.58 Aligned_cols=21 Identities=24% Similarity=0.230 Sum_probs=17.0
Q ss_pred cCCCeEEEcCCCCchhHHhHH
Q psy7268 75 SGKSAILVAETGCGKTLSFLA 95 (134)
Q Consensus 75 ~g~dvli~a~tGsGKT~~~~l 95 (134)
.|.-+.+.+|+|+|||.....
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~ 43 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHT 43 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHH
Confidence 466789999999999976543
No 270
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=84.92 E-value=0.47 Score=32.32 Aligned_cols=16 Identities=38% Similarity=0.540 Sum_probs=13.2
Q ss_pred CeEEEcCCCCchhHHh
Q psy7268 78 SAILVAETGCGKTLSF 93 (134)
Q Consensus 78 dvli~a~tGsGKT~~~ 93 (134)
.+.+.||+|+|||...
T Consensus 2 ~i~l~G~nGsGKTTLl 17 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLV 17 (178)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3678999999999764
No 271
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=84.86 E-value=0.45 Score=31.81 Aligned_cols=16 Identities=25% Similarity=0.256 Sum_probs=13.3
Q ss_pred CeEEEcCCCCchhHHh
Q psy7268 78 SAILVAETGCGKTLSF 93 (134)
Q Consensus 78 dvli~a~tGsGKT~~~ 93 (134)
-.++.+++|+|||..+
T Consensus 28 ~~~i~G~NGsGKStll 43 (182)
T 3kta_A 28 FTAIVGANGSGKSNIG 43 (182)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred cEEEECCCCCCHHHHH
Confidence 4578999999999764
No 272
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=84.86 E-value=0.44 Score=38.73 Aligned_cols=16 Identities=13% Similarity=0.445 Sum_probs=14.4
Q ss_pred CeEEEcCCCCchhHHh
Q psy7268 78 SAILVAETGCGKTLSF 93 (134)
Q Consensus 78 dvli~a~tGsGKT~~~ 93 (134)
++++.||+|+|||...
T Consensus 329 ~vLL~GppGtGKT~LA 344 (595)
T 3f9v_A 329 HILIIGDPGTAKSQML 344 (595)
T ss_dssp CEEEEESSCCTHHHHH
T ss_pred ceEEECCCchHHHHHH
Confidence 8999999999999653
No 273
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=84.75 E-value=0.51 Score=31.74 Aligned_cols=19 Identities=21% Similarity=0.295 Sum_probs=16.0
Q ss_pred cCCCeEEEcCCCCchhHHh
Q psy7268 75 SGKSAILVAETGCGKTLSF 93 (134)
Q Consensus 75 ~g~dvli~a~tGsGKT~~~ 93 (134)
.+.-+++.|++|||||...
T Consensus 8 ~~~~I~l~G~~GsGKsT~~ 26 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQC 26 (196)
T ss_dssp TSCEEEEEECTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5667899999999999763
No 274
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=84.72 E-value=1.2 Score=31.16 Aligned_cols=39 Identities=13% Similarity=0.210 Sum_probs=26.0
Q ss_pred cCCCeEEEcCCCCchhHHhHHHHHHHHHhhcCCCCCCCCCCCcEEEEEcCc
Q psy7268 75 SGKSAILVAETGCGKTLSFLAPLVQQILTWKSRPEYKPELNAPLALIITPG 125 (134)
Q Consensus 75 ~g~dvli~a~tGsGKT~~~~lpil~~~~~~~~~~~~~~~~~~~~~lil~Pt 125 (134)
.|+=.++.|+.|+|||.-.+-.+-.... .+.+++++.|.
T Consensus 19 ~g~l~fiyG~MgsGKTt~Ll~~i~n~~~------------~~~kvl~~kp~ 57 (195)
T 1w4r_A 19 RGQIQVILGPMFSGKSTELMRRVRRFQI------------AQYKCLVIKYA 57 (195)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHH------------TTCCEEEEEET
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHH------------cCCeEEEEccc
Confidence 3555788999999999655444333332 34568888765
No 275
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=84.60 E-value=0.51 Score=31.14 Aligned_cols=15 Identities=20% Similarity=0.598 Sum_probs=12.8
Q ss_pred eEEEcCCCCchhHHh
Q psy7268 79 AILVAETGCGKTLSF 93 (134)
Q Consensus 79 vli~a~tGsGKT~~~ 93 (134)
.++.+|+|+|||...
T Consensus 26 ~~I~G~NGsGKStil 40 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLL 40 (149)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 578899999999764
No 276
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=84.51 E-value=0.48 Score=35.80 Aligned_cols=16 Identities=31% Similarity=0.299 Sum_probs=13.6
Q ss_pred CeEEEcCCCCchhHHh
Q psy7268 78 SAILVAETGCGKTLSF 93 (134)
Q Consensus 78 dvli~a~tGsGKT~~~ 93 (134)
-+++.||||+|||...
T Consensus 7 ~i~i~GptGsGKTtla 22 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLA 22 (323)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5789999999999654
No 277
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=84.47 E-value=0.53 Score=31.92 Aligned_cols=19 Identities=21% Similarity=0.237 Sum_probs=15.8
Q ss_pred cCCCeEEEcCCCCchhHHh
Q psy7268 75 SGKSAILVAETGCGKTLSF 93 (134)
Q Consensus 75 ~g~dvli~a~tGsGKT~~~ 93 (134)
.|.-+++.|+.|||||...
T Consensus 3 ~~~~I~l~G~~GsGKsT~~ 21 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQC 21 (204)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHH
Confidence 4667899999999999764
No 278
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=84.45 E-value=0.48 Score=32.64 Aligned_cols=19 Identities=26% Similarity=0.230 Sum_probs=15.8
Q ss_pred cCCCeEEEcCCCCchhHHh
Q psy7268 75 SGKSAILVAETGCGKTLSF 93 (134)
Q Consensus 75 ~g~dvli~a~tGsGKT~~~ 93 (134)
.|.-+.+.+|+|+|||...
T Consensus 24 ~G~~~~l~G~nGsGKSTll 42 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLA 42 (231)
T ss_dssp SSEEEEEEESTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4666899999999999654
No 279
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=84.38 E-value=0.62 Score=32.14 Aligned_cols=18 Identities=28% Similarity=0.458 Sum_probs=14.8
Q ss_pred CCCeEEEcCCCCchhHHh
Q psy7268 76 GKSAILVAETGCGKTLSF 93 (134)
Q Consensus 76 g~dvli~a~tGsGKT~~~ 93 (134)
|.-+.+.+++|+|||...
T Consensus 1 G~~i~i~G~nG~GKTTll 18 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLI 18 (189)
T ss_dssp CCCEEEESCCSSCHHHHH
T ss_pred CCEEEEECCCCChHHHHH
Confidence 456789999999999764
No 280
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=84.33 E-value=0.4 Score=33.60 Aligned_cols=19 Identities=37% Similarity=0.613 Sum_probs=12.1
Q ss_pred cCCCeEEEcCCCCchhHHh
Q psy7268 75 SGKSAILVAETGCGKTLSF 93 (134)
Q Consensus 75 ~g~dvli~a~tGsGKT~~~ 93 (134)
.|+-+.+.||+|+|||...
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~ 44 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVA 44 (231)
T ss_dssp CCCEEEEECSCC----CHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5777889999999999664
No 281
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=84.22 E-value=0.44 Score=32.68 Aligned_cols=19 Identities=21% Similarity=0.024 Sum_probs=14.8
Q ss_pred cCCCeEEEcCCCCchhHHh
Q psy7268 75 SGKSAILVAETGCGKTLSF 93 (134)
Q Consensus 75 ~g~dvli~a~tGsGKT~~~ 93 (134)
.|.-+.+.|++|||||...
T Consensus 5 ~~~~i~i~G~~GsGKSTl~ 23 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLA 23 (211)
T ss_dssp CCEEEEEEESTTSSHHHHH
T ss_pred CcEEEEEECCCCCCHHHHH
Confidence 3445778999999999764
No 282
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=84.22 E-value=0.83 Score=31.84 Aligned_cols=15 Identities=33% Similarity=0.696 Sum_probs=13.0
Q ss_pred eEEEcCCCCchhHHh
Q psy7268 79 AILVAETGCGKTLSF 93 (134)
Q Consensus 79 vli~a~tGsGKT~~~ 93 (134)
.++.|++|||||...
T Consensus 8 ~l~tG~pGsGKT~~a 22 (199)
T 2r2a_A 8 CLITGTPGSGKTLKM 22 (199)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEEeCCCCCHHHHH
Confidence 578999999999865
No 283
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=84.20 E-value=0.49 Score=35.99 Aligned_cols=16 Identities=25% Similarity=0.490 Sum_probs=13.6
Q ss_pred CeEEEcCCCCchhHHh
Q psy7268 78 SAILVAETGCGKTLSF 93 (134)
Q Consensus 78 dvli~a~tGsGKT~~~ 93 (134)
-.++.||||+|||..+
T Consensus 25 ~~~i~G~NGaGKTTll 40 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLF 40 (365)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4678999999999766
No 284
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=84.15 E-value=1.5 Score=31.43 Aligned_cols=19 Identities=42% Similarity=0.690 Sum_probs=15.6
Q ss_pred CC-CeEEEcCCCCchhHHhH
Q psy7268 76 GK-SAILVAETGCGKTLSFL 94 (134)
Q Consensus 76 g~-dvli~a~tGsGKT~~~~ 94 (134)
|+ ++++.++.|+|||...+
T Consensus 5 g~l~I~~~~kgGvGKTt~a~ 24 (228)
T 2r8r_A 5 GRLKVFLGAAPGVGKTYAML 24 (228)
T ss_dssp CCEEEEEESSTTSSHHHHHH
T ss_pred ceEEEEEECCCCCcHHHHHH
Confidence 44 58899999999998764
No 285
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=84.04 E-value=0.52 Score=31.47 Aligned_cols=16 Identities=25% Similarity=0.418 Sum_probs=13.2
Q ss_pred CeEEEcCCCCchhHHh
Q psy7268 78 SAILVAETGCGKTLSF 93 (134)
Q Consensus 78 dvli~a~tGsGKT~~~ 93 (134)
-+++.|++|+|||...
T Consensus 3 ~I~i~G~~GsGKsT~~ 18 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVL 18 (194)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3788999999999654
No 286
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=83.98 E-value=0.52 Score=37.83 Aligned_cols=19 Identities=32% Similarity=0.328 Sum_probs=16.3
Q ss_pred cCCCeEEEcCCCCchhHHh
Q psy7268 75 SGKSAILVAETGCGKTLSF 93 (134)
Q Consensus 75 ~g~dvli~a~tGsGKT~~~ 93 (134)
.|..+++.||+|+|||...
T Consensus 107 ~g~~vll~Gp~GtGKTtla 125 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLA 125 (543)
T ss_dssp CSCEEEEESSSSSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4778999999999999764
No 287
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=83.97 E-value=0.5 Score=44.86 Aligned_cols=21 Identities=38% Similarity=0.542 Sum_probs=18.1
Q ss_pred HHcCCCeEEEcCCCCchhHHh
Q psy7268 73 LLSGKSAILVAETGCGKTLSF 93 (134)
Q Consensus 73 ~~~g~dvli~a~tGsGKT~~~ 93 (134)
+..|+.++++||+|+|||+..
T Consensus 1264 l~~~~~vLL~GPpGtGKT~la 1284 (2695)
T 4akg_A 1264 LNSKRGIILCGPPGSGKTMIM 1284 (2695)
T ss_dssp HHHTCEEEEECSTTSSHHHHH
T ss_pred HHCCCeEEEECCCCCCHHHHH
Confidence 447899999999999999764
No 288
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=83.95 E-value=0.97 Score=33.58 Aligned_cols=20 Identities=25% Similarity=0.202 Sum_probs=15.9
Q ss_pred CCCeEEEcCCCCchhHHhHH
Q psy7268 76 GKSAILVAETGCGKTLSFLA 95 (134)
Q Consensus 76 g~dvli~a~tGsGKT~~~~l 95 (134)
|.-+++.|++|+|||...+-
T Consensus 107 G~i~~i~G~~GsGKT~la~~ 126 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQ 126 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHH
T ss_pred CcEEEEECCCCCCHhHHHHH
Confidence 45689999999999966543
No 289
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=83.95 E-value=0.63 Score=30.96 Aligned_cols=16 Identities=19% Similarity=0.347 Sum_probs=13.9
Q ss_pred CeEEEcCCCCchhHHh
Q psy7268 78 SAILVAETGCGKTLSF 93 (134)
Q Consensus 78 dvli~a~tGsGKT~~~ 93 (134)
.+++.+++|||||...
T Consensus 6 ~i~i~G~~GsGKsTla 21 (175)
T 1via_A 6 NIVFIGFMGSGKSTLA 21 (175)
T ss_dssp CEEEECCTTSCHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 5889999999999763
No 290
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=83.87 E-value=0.51 Score=37.02 Aligned_cols=17 Identities=41% Similarity=0.399 Sum_probs=14.7
Q ss_pred CCeEEEcCCCCchhHHh
Q psy7268 77 KSAILVAETGCGKTLSF 93 (134)
Q Consensus 77 ~dvli~a~tGsGKT~~~ 93 (134)
.++++.||+|+|||...
T Consensus 51 ~~vLL~GppGtGKTtlA 67 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLA 67 (447)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCcHHHHH
Confidence 36999999999999765
No 291
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=83.86 E-value=0.58 Score=36.47 Aligned_cols=26 Identities=15% Similarity=0.225 Sum_probs=18.6
Q ss_pred CCCeEEEcCCCCchhHHhHHHHHHHHH
Q psy7268 76 GKSAILVAETGCGKTLSFLAPLVQQIL 102 (134)
Q Consensus 76 g~dvli~a~tGsGKT~~~~lpil~~~~ 102 (134)
+..+++.||+|+|||... -.+...+.
T Consensus 130 ~~~lll~Gp~G~GKTtLa-~aia~~l~ 155 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLL-QSIGNYVV 155 (440)
T ss_dssp SCCEEEECSSSSSHHHHH-HHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHH-HHHHHHHH
Confidence 457999999999999654 34444443
No 292
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=83.79 E-value=0.53 Score=35.79 Aligned_cols=16 Identities=31% Similarity=0.295 Sum_probs=13.5
Q ss_pred CeEEEcCCCCchhHHh
Q psy7268 78 SAILVAETGCGKTLSF 93 (134)
Q Consensus 78 dvli~a~tGsGKT~~~ 93 (134)
-++|.||||||||...
T Consensus 9 lI~I~GptgSGKTtla 24 (340)
T 3d3q_A 9 LIVIVGPTASGKTELS 24 (340)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred eEEEECCCcCcHHHHH
Confidence 4789999999999654
No 293
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=83.77 E-value=0.57 Score=32.24 Aligned_cols=15 Identities=27% Similarity=0.403 Sum_probs=13.1
Q ss_pred eEEEcCCCCchhHHh
Q psy7268 79 AILVAETGCGKTLSF 93 (134)
Q Consensus 79 vli~a~tGsGKT~~~ 93 (134)
+++.|++|||||...
T Consensus 3 I~l~G~~GsGKsT~a 17 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQA 17 (216)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 688999999999764
No 294
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=83.74 E-value=0.54 Score=39.80 Aligned_cols=54 Identities=24% Similarity=0.397 Sum_probs=34.5
Q ss_pred CCCCcccCCCCHHHHHHHHHC-CC--CCChHHHHHHHHHHHcCCCeEEEcCCCCchhHHh
Q psy7268 37 DLGTFEDTGLAPEIIDIFTKR-GL--TTPTEIQKYSIPTLLSGKSAILVAETGCGKTLSF 93 (134)
Q Consensus 37 ~~~~f~~~~l~~~i~~~l~~~-g~--~~~t~iQ~~~i~~~~~g~dvli~a~tGsGKT~~~ 93 (134)
|-.+|++++.-++..+.|.+. -+ ++|...+.. .+...+.+++.||+|+|||+..
T Consensus 472 p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~---g~~~~~gvLl~GPPGtGKT~lA 528 (806)
T 3cf2_A 472 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKF---GMTPSKGVLFYGPPGCGKTLLA 528 (806)
T ss_dssp CCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSS---CCCCCSCCEEESSTTSSHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhc---CCCCCceEEEecCCCCCchHHH
Confidence 445799999889998888874 21 222111100 0112357999999999999764
No 295
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=83.72 E-value=1.8 Score=31.97 Aligned_cols=16 Identities=25% Similarity=0.326 Sum_probs=13.7
Q ss_pred CeEEEcCCCCchhHHh
Q psy7268 78 SAILVAETGCGKTLSF 93 (134)
Q Consensus 78 dvli~a~tGsGKT~~~ 93 (134)
.+++.||+|+|||...
T Consensus 40 ~~ll~G~~G~GKT~la 55 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIA 55 (373)
T ss_dssp EEEEESCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3789999999999664
No 296
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=83.57 E-value=0.62 Score=33.22 Aligned_cols=19 Identities=32% Similarity=0.670 Sum_probs=15.8
Q ss_pred cCCCeEEEcCCCCchhHHh
Q psy7268 75 SGKSAILVAETGCGKTLSF 93 (134)
Q Consensus 75 ~g~dvli~a~tGsGKT~~~ 93 (134)
.|.-+.+.||+|+|||...
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl 48 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLL 48 (237)
T ss_dssp TTCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5777889999999999543
No 297
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=83.35 E-value=0.68 Score=36.48 Aligned_cols=18 Identities=33% Similarity=0.462 Sum_probs=15.5
Q ss_pred CCCeEEEcCCCCchhHHh
Q psy7268 76 GKSAILVAETGCGKTLSF 93 (134)
Q Consensus 76 g~dvli~a~tGsGKT~~~ 93 (134)
.+++++.+|+|+|||...
T Consensus 50 ~~~iLl~GppGtGKT~la 67 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIA 67 (444)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 467999999999999764
No 298
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=83.26 E-value=0.54 Score=31.42 Aligned_cols=19 Identities=32% Similarity=0.368 Sum_probs=15.4
Q ss_pred cCCCeEEEcCCCCchhHHh
Q psy7268 75 SGKSAILVAETGCGKTLSF 93 (134)
Q Consensus 75 ~g~dvli~a~tGsGKT~~~ 93 (134)
.|.-+.+.|+.|+|||...
T Consensus 4 ~g~~i~l~G~~GsGKST~~ 22 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVS 22 (179)
T ss_dssp CCEEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4566889999999999753
No 299
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=83.20 E-value=0.76 Score=30.71 Aligned_cols=17 Identities=35% Similarity=0.391 Sum_probs=14.3
Q ss_pred CCeEEEcCCCCchhHHh
Q psy7268 77 KSAILVAETGCGKTLSF 93 (134)
Q Consensus 77 ~dvli~a~tGsGKT~~~ 93 (134)
.-+++.|++|||||...
T Consensus 3 ~~I~l~G~~GsGKsT~a 19 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIG 19 (184)
T ss_dssp CSEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 45889999999999764
No 300
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=83.06 E-value=0.64 Score=31.30 Aligned_cols=19 Identities=21% Similarity=0.333 Sum_probs=15.8
Q ss_pred cCCCeEEEcCCCCchhHHh
Q psy7268 75 SGKSAILVAETGCGKTLSF 93 (134)
Q Consensus 75 ~g~dvli~a~tGsGKT~~~ 93 (134)
.+.-+++.|++|||||...
T Consensus 11 ~~~~I~l~G~~GsGKsT~a 29 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQC 29 (199)
T ss_dssp HSCEEEEEECTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4667899999999999763
No 301
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=83.04 E-value=0.63 Score=32.04 Aligned_cols=15 Identities=27% Similarity=0.330 Sum_probs=13.1
Q ss_pred eEEEcCCCCchhHHh
Q psy7268 79 AILVAETGCGKTLSF 93 (134)
Q Consensus 79 vli~a~tGsGKT~~~ 93 (134)
+++.|++|||||...
T Consensus 3 I~l~G~~GsGKsT~a 17 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQG 17 (216)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 788999999999764
No 302
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=83.00 E-value=0.77 Score=32.35 Aligned_cols=19 Identities=26% Similarity=0.365 Sum_probs=16.0
Q ss_pred cCCCeEEEcCCCCchhHHh
Q psy7268 75 SGKSAILVAETGCGKTLSF 93 (134)
Q Consensus 75 ~g~dvli~a~tGsGKT~~~ 93 (134)
.|.-+.+.||+|+|||...
T Consensus 34 ~Ge~~~iiG~NGsGKSTLl 52 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLL 52 (214)
T ss_dssp TTCCEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5777889999999999653
No 303
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=82.96 E-value=1.5 Score=34.44 Aligned_cols=16 Identities=31% Similarity=0.482 Sum_probs=13.8
Q ss_pred CeEEEcCCCCchhHHh
Q psy7268 78 SAILVAETGCGKTLSF 93 (134)
Q Consensus 78 dvli~a~tGsGKT~~~ 93 (134)
-+++.+++|+|||...
T Consensus 102 vIlivG~~G~GKTTt~ 117 (443)
T 3dm5_A 102 ILLMVGIQGSGKTTTV 117 (443)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECcCCCCHHHHH
Confidence 4788999999999775
No 304
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=82.92 E-value=0.57 Score=38.91 Aligned_cols=26 Identities=38% Similarity=0.543 Sum_probs=18.6
Q ss_pred cCCCeEEEcCCCCchhHHhHHHHHHHH
Q psy7268 75 SGKSAILVAETGCGKTLSFLAPLVQQI 101 (134)
Q Consensus 75 ~g~dvli~a~tGsGKT~~~~lpil~~~ 101 (134)
...++++.||+|+|||... -.+...+
T Consensus 200 ~~~~vLL~G~pGtGKT~la-~~la~~l 225 (758)
T 3pxi_A 200 TKNNPVLIGEPGVGKTAIA-EGLAQQI 225 (758)
T ss_dssp SSCEEEEESCTTTTTHHHH-HHHHHHH
T ss_pred CCCCeEEECCCCCCHHHHH-HHHHHHH
Confidence 3458999999999999765 3334443
No 305
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=82.92 E-value=0.63 Score=32.14 Aligned_cols=17 Identities=18% Similarity=0.198 Sum_probs=14.1
Q ss_pred CCeEEEcCCCCchhHHh
Q psy7268 77 KSAILVAETGCGKTLSF 93 (134)
Q Consensus 77 ~dvli~a~tGsGKT~~~ 93 (134)
.-+.+.|++|||||...
T Consensus 6 ~~i~i~G~~GsGKSTl~ 22 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLC 22 (227)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45788999999998764
No 306
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=82.86 E-value=0.84 Score=32.94 Aligned_cols=24 Identities=29% Similarity=0.505 Sum_probs=19.1
Q ss_pred HHcCCCeEEEcCCCCchhHHhHHH
Q psy7268 73 LLSGKSAILVAETGCGKTLSFLAP 96 (134)
Q Consensus 73 ~~~g~dvli~a~tGsGKT~~~~lp 96 (134)
+..|.-+++.|++|+|||.....-
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l 50 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQL 50 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHH
Confidence 457788999999999999765443
No 307
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=82.82 E-value=0.71 Score=31.97 Aligned_cols=18 Identities=22% Similarity=0.373 Sum_probs=15.0
Q ss_pred CCCeEEEcCCCCchhHHh
Q psy7268 76 GKSAILVAETGCGKTLSF 93 (134)
Q Consensus 76 g~dvli~a~tGsGKT~~~ 93 (134)
+..+++.|++|||||...
T Consensus 4 ~~~I~l~G~~GsGKsT~a 21 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQA 21 (220)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 456899999999999763
No 308
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=82.81 E-value=0.58 Score=31.49 Aligned_cols=19 Identities=32% Similarity=0.305 Sum_probs=15.5
Q ss_pred cCCCeEEEcCCCCchhHHh
Q psy7268 75 SGKSAILVAETGCGKTLSF 93 (134)
Q Consensus 75 ~g~dvli~a~tGsGKT~~~ 93 (134)
.|.-+++.|++|+|||...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~ 30 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIA 30 (186)
T ss_dssp CCEEEEEECCTTSSHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHH
Confidence 3556889999999999764
No 309
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=82.75 E-value=0.67 Score=32.76 Aligned_cols=18 Identities=22% Similarity=0.294 Sum_probs=15.1
Q ss_pred CCCeEEEcCCCCchhHHh
Q psy7268 76 GKSAILVAETGCGKTLSF 93 (134)
Q Consensus 76 g~dvli~a~tGsGKT~~~ 93 (134)
+.-+.+.|++|+|||...
T Consensus 27 ~~~i~l~G~~GsGKSTl~ 44 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVC 44 (246)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 456899999999999754
No 310
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=82.70 E-value=0.65 Score=32.39 Aligned_cols=18 Identities=22% Similarity=0.263 Sum_probs=15.1
Q ss_pred CCCeEEEcCCCCchhHHh
Q psy7268 76 GKSAILVAETGCGKTLSF 93 (134)
Q Consensus 76 g~dvli~a~tGsGKT~~~ 93 (134)
+.-+++.|++|||||...
T Consensus 7 ~~~I~l~G~~GsGKsT~a 24 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVS 24 (227)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 456899999999999764
No 311
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=82.65 E-value=0.77 Score=31.84 Aligned_cols=18 Identities=11% Similarity=0.165 Sum_probs=15.0
Q ss_pred CCCeEEEcCCCCchhHHh
Q psy7268 76 GKSAILVAETGCGKTLSF 93 (134)
Q Consensus 76 g~dvli~a~tGsGKT~~~ 93 (134)
+..+++.|++|+|||...
T Consensus 5 ~~~I~l~G~~GsGKsT~~ 22 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQC 22 (222)
T ss_dssp SCCEEEEESTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 456899999999999764
No 312
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=82.62 E-value=0.64 Score=30.99 Aligned_cols=16 Identities=19% Similarity=0.355 Sum_probs=13.6
Q ss_pred CeEEEcCCCCchhHHh
Q psy7268 78 SAILVAETGCGKTLSF 93 (134)
Q Consensus 78 dvli~a~tGsGKT~~~ 93 (134)
-+++.|++|||||...
T Consensus 8 ~I~l~G~~GsGKsT~~ 23 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQC 23 (194)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788999999999763
No 313
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=82.60 E-value=0.69 Score=30.46 Aligned_cols=17 Identities=29% Similarity=0.522 Sum_probs=14.2
Q ss_pred CCeEEEcCCCCchhHHh
Q psy7268 77 KSAILVAETGCGKTLSF 93 (134)
Q Consensus 77 ~dvli~a~tGsGKT~~~ 93 (134)
+-+++.|++|||||...
T Consensus 3 ~~I~l~G~~GsGKsT~a 19 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVG 19 (173)
T ss_dssp CCEEEESCTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 45889999999999763
No 314
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=82.58 E-value=0.71 Score=32.69 Aligned_cols=19 Identities=32% Similarity=0.459 Sum_probs=15.9
Q ss_pred cCCCeEEEcCCCCchhHHh
Q psy7268 75 SGKSAILVAETGCGKTLSF 93 (134)
Q Consensus 75 ~g~dvli~a~tGsGKT~~~ 93 (134)
.|.-+.+.||+|+|||...
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl 51 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLL 51 (229)
T ss_dssp TTCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5777889999999999643
No 315
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=82.46 E-value=0.79 Score=34.24 Aligned_cols=19 Identities=11% Similarity=0.251 Sum_probs=16.4
Q ss_pred cCCCeEEEcCCCCchhHHh
Q psy7268 75 SGKSAILVAETGCGKTLSF 93 (134)
Q Consensus 75 ~g~dvli~a~tGsGKT~~~ 93 (134)
.|+-+.+.||+|+|||...
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl 143 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLC 143 (305)
T ss_dssp TCSEEEEECSSSSSHHHHH
T ss_pred CCCEEEEECCCCCcHHHHH
Confidence 6888999999999998654
No 316
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=82.33 E-value=0.7 Score=32.61 Aligned_cols=18 Identities=22% Similarity=0.481 Sum_probs=15.2
Q ss_pred cCCCeEEEcCCCCchhHH
Q psy7268 75 SGKSAILVAETGCGKTLS 92 (134)
Q Consensus 75 ~g~dvli~a~tGsGKT~~ 92 (134)
.|.-+.+.||+|+|||..
T Consensus 29 ~Ge~~~iiG~nGsGKSTL 46 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTL 46 (224)
T ss_dssp TTCEEEEEECTTSCHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 567788999999999954
No 317
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=82.30 E-value=0.61 Score=31.65 Aligned_cols=19 Identities=21% Similarity=0.230 Sum_probs=15.4
Q ss_pred cCCCeEEEcCCCCchhHHh
Q psy7268 75 SGKSAILVAETGCGKTLSF 93 (134)
Q Consensus 75 ~g~dvli~a~tGsGKT~~~ 93 (134)
.|.-+++.|+.|||||...
T Consensus 3 ~~~~I~i~G~~GsGKsT~~ 21 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQA 21 (213)
T ss_dssp CCEEEEEECCTTSSHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHH
Confidence 3556889999999999764
No 318
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=82.26 E-value=0.74 Score=33.19 Aligned_cols=19 Identities=21% Similarity=0.555 Sum_probs=15.8
Q ss_pred cCCCeEEEcCCCCchhHHh
Q psy7268 75 SGKSAILVAETGCGKTLSF 93 (134)
Q Consensus 75 ~g~dvli~a~tGsGKT~~~ 93 (134)
.|.-+.+.||+|+|||...
T Consensus 32 ~Ge~~~liG~nGsGKSTLl 50 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLI 50 (257)
T ss_dssp TTCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5777889999999999653
No 319
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=82.15 E-value=0.69 Score=31.52 Aligned_cols=19 Identities=21% Similarity=0.242 Sum_probs=15.8
Q ss_pred cCCCeEEEcCCCCchhHHh
Q psy7268 75 SGKSAILVAETGCGKTLSF 93 (134)
Q Consensus 75 ~g~dvli~a~tGsGKT~~~ 93 (134)
.|.-+++.|+.|||||...
T Consensus 9 ~~~~I~l~G~~GsGKST~~ 27 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQS 27 (212)
T ss_dssp CSCEEEEEESTTSSHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHH
Confidence 4567899999999999764
No 320
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=82.15 E-value=1.6 Score=31.85 Aligned_cols=40 Identities=23% Similarity=0.232 Sum_probs=25.2
Q ss_pred CCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCC--C-eEEEcCCCCchhHHh
Q psy7268 39 GTFEDTGLAPEIIDIFTKRGLTTPTEIQKYSIPTLLSGK--S-AILVAETGCGKTLSF 93 (134)
Q Consensus 39 ~~f~~~~l~~~i~~~l~~~g~~~~t~iQ~~~i~~~~~g~--d-vli~a~tGsGKT~~~ 93 (134)
.+|+++-.++...+.+.+ .+..|+ + +++.+|+|+|||...
T Consensus 23 ~~~~~ivg~~~~~~~l~~---------------~l~~~~~~~~~L~~G~~G~GKT~la 65 (324)
T 3u61_B 23 STIDECILPAFDKETFKS---------------ITSKGKIPHIILHSPSPGTGKTTVA 65 (324)
T ss_dssp CSTTTSCCCHHHHHHHHH---------------HHHTTCCCSEEEECSSTTSSHHHHH
T ss_pred CCHHHHhCcHHHHHHHHH---------------HHHcCCCCeEEEeeCcCCCCHHHHH
Confidence 467777666666655543 112333 3 566778999999764
No 321
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=82.12 E-value=0.76 Score=33.00 Aligned_cols=19 Identities=26% Similarity=0.399 Sum_probs=16.0
Q ss_pred cCCCeEEEcCCCCchhHHh
Q psy7268 75 SGKSAILVAETGCGKTLSF 93 (134)
Q Consensus 75 ~g~dvli~a~tGsGKT~~~ 93 (134)
.|.-+.+.||+|+|||...
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl 52 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLT 52 (247)
T ss_dssp TTCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5777889999999999654
No 322
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=82.11 E-value=0.68 Score=31.53 Aligned_cols=16 Identities=31% Similarity=0.503 Sum_probs=13.5
Q ss_pred CeEEEcCCCCchhHHh
Q psy7268 78 SAILVAETGCGKTLSF 93 (134)
Q Consensus 78 dvli~a~tGsGKT~~~ 93 (134)
-+.+.|++|+|||...
T Consensus 3 ~i~i~G~~GsGKSTl~ 18 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVA 18 (204)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 3678999999999874
No 323
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=82.00 E-value=0.81 Score=31.15 Aligned_cols=18 Identities=22% Similarity=0.338 Sum_probs=14.6
Q ss_pred CCCeEEEcCCCCchhHHh
Q psy7268 76 GKSAILVAETGCGKTLSF 93 (134)
Q Consensus 76 g~dvli~a~tGsGKT~~~ 93 (134)
+.-+++.|++|||||...
T Consensus 20 ~~~I~l~G~~GsGKST~a 37 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQA 37 (201)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 345889999999999763
No 324
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=81.99 E-value=0.77 Score=33.23 Aligned_cols=19 Identities=42% Similarity=0.588 Sum_probs=16.2
Q ss_pred cCCCeEEEcCCCCchhHHh
Q psy7268 75 SGKSAILVAETGCGKTLSF 93 (134)
Q Consensus 75 ~g~dvli~a~tGsGKT~~~ 93 (134)
.|.-+.+.||+|+|||...
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl 63 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIA 63 (260)
T ss_dssp TTCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5777899999999999654
No 325
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=81.97 E-value=0.74 Score=33.74 Aligned_cols=19 Identities=26% Similarity=0.574 Sum_probs=15.7
Q ss_pred cCCCeEEEcCCCCchhHHh
Q psy7268 75 SGKSAILVAETGCGKTLSF 93 (134)
Q Consensus 75 ~g~dvli~a~tGsGKT~~~ 93 (134)
.|.-+.+.||+|+|||...
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl 51 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLF 51 (275)
T ss_dssp TTSEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5777889999999999653
No 326
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=81.95 E-value=0.78 Score=32.72 Aligned_cols=19 Identities=32% Similarity=0.620 Sum_probs=15.8
Q ss_pred cCCCeEEEcCCCCchhHHh
Q psy7268 75 SGKSAILVAETGCGKTLSF 93 (134)
Q Consensus 75 ~g~dvli~a~tGsGKT~~~ 93 (134)
.|.-+.+.||+|+|||...
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl 49 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTL 49 (240)
T ss_dssp TTCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5677889999999999653
No 327
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=81.92 E-value=0.71 Score=33.13 Aligned_cols=17 Identities=29% Similarity=0.247 Sum_probs=14.2
Q ss_pred CCeEEEcCCCCchhHHh
Q psy7268 77 KSAILVAETGCGKTLSF 93 (134)
Q Consensus 77 ~dvli~a~tGsGKT~~~ 93 (134)
.-++++|++|||||...
T Consensus 5 ~lIvl~G~pGSGKSTla 21 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFS 21 (260)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred EEEEEEcCCCCCHHHHH
Confidence 45889999999999764
No 328
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=81.91 E-value=0.68 Score=36.15 Aligned_cols=22 Identities=27% Similarity=0.422 Sum_probs=15.7
Q ss_pred eEEEcCCCCchhHHhHHHHHHHH
Q psy7268 79 AILVAETGCGKTLSFLAPLVQQI 101 (134)
Q Consensus 79 vli~a~tGsGKT~~~~lpil~~~ 101 (134)
++|.||||+|||... .-+...+
T Consensus 5 i~i~GptgsGKttla-~~La~~~ 26 (409)
T 3eph_A 5 IVIAGTTGVGKSQLS-IQLAQKF 26 (409)
T ss_dssp EEEEECSSSSHHHHH-HHHHHHH
T ss_pred EEEECcchhhHHHHH-HHHHHHC
Confidence 678999999999554 4444443
No 329
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=81.84 E-value=0.75 Score=34.19 Aligned_cols=18 Identities=33% Similarity=0.660 Sum_probs=14.6
Q ss_pred CCCeEEEcCCCCchhHHh
Q psy7268 76 GKSAILVAETGCGKTLSF 93 (134)
Q Consensus 76 g~dvli~a~tGsGKT~~~ 93 (134)
|.-+.+.||+|+|||...
T Consensus 102 g~vi~lvG~nGsGKTTll 119 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTI 119 (304)
T ss_dssp SSEEEEECSTTSSHHHHH
T ss_pred CeEEEEECCCCCcHHHHH
Confidence 445788999999999764
No 330
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=81.82 E-value=0.78 Score=33.37 Aligned_cols=19 Identities=26% Similarity=0.550 Sum_probs=15.8
Q ss_pred cCCCeEEEcCCCCchhHHh
Q psy7268 75 SGKSAILVAETGCGKTLSF 93 (134)
Q Consensus 75 ~g~dvli~a~tGsGKT~~~ 93 (134)
.|.-+.+.||+|+|||...
T Consensus 36 ~Ge~~~liG~nGsGKSTLl 54 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLL 54 (266)
T ss_dssp TTCEEEEECCTTSCHHHHH
T ss_pred CCCEEEEECCCCCcHHHHH
Confidence 5777889999999999653
No 331
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=81.73 E-value=0.75 Score=31.36 Aligned_cols=19 Identities=21% Similarity=0.244 Sum_probs=16.0
Q ss_pred cCCCeEEEcCCCCchhHHh
Q psy7268 75 SGKSAILVAETGCGKTLSF 93 (134)
Q Consensus 75 ~g~dvli~a~tGsGKT~~~ 93 (134)
.|.-+++.|+.|||||...
T Consensus 8 ~~~~I~l~G~~GsGKsT~~ 26 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQS 26 (215)
T ss_dssp CCCEEEEEESTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4667899999999999764
No 332
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=81.69 E-value=0.77 Score=31.35 Aligned_cols=15 Identities=33% Similarity=0.275 Sum_probs=12.8
Q ss_pred eEEEcCCCCchhHHh
Q psy7268 79 AILVAETGCGKTLSF 93 (134)
Q Consensus 79 vli~a~tGsGKT~~~ 93 (134)
+.+.|+.|||||...
T Consensus 5 i~l~G~~GsGKST~~ 19 (206)
T 1jjv_A 5 VGLTGGIGSGKTTIA 19 (206)
T ss_dssp EEEECSTTSCHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 678899999999764
No 333
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=81.64 E-value=0.77 Score=31.21 Aligned_cols=16 Identities=19% Similarity=0.345 Sum_probs=13.6
Q ss_pred CeEEEcCCCCchhHHh
Q psy7268 78 SAILVAETGCGKTLSF 93 (134)
Q Consensus 78 dvli~a~tGsGKT~~~ 93 (134)
-+++.|+.|||||...
T Consensus 17 ~I~l~G~~GsGKsT~~ 32 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQC 32 (203)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788999999999764
No 334
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=81.54 E-value=1.7 Score=40.35 Aligned_cols=44 Identities=16% Similarity=0.185 Sum_probs=29.2
Q ss_pred HHHHHc------CCCeEEEcCCCCchhHHhHHHHHHHHHhhcCCCCCCCCCCCcEEEEEcCc
Q psy7268 70 IPTLLS------GKSAILVAETGCGKTLSFLAPLVQQILTWKSRPEYKPELNAPLALIITPG 125 (134)
Q Consensus 70 i~~~~~------g~dvli~a~tGsGKT~~~~lpil~~~~~~~~~~~~~~~~~~~~~lil~Pt 125 (134)
+..++. |+.+++.+|+|+|||.....-+.+.. . ++.+++++...
T Consensus 1415 LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~-~-----------~G~~v~Fi~~e 1464 (2050)
T 3cmu_A 1415 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ-R-----------EGKTCAFIDAE 1464 (2050)
T ss_dssp HHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHH-T-----------TTCCEEEECTT
T ss_pred HHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHH-H-----------cCCcEEEEEcc
Confidence 555554 77899999999999987644433322 2 45567766543
No 335
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=81.50 E-value=1.3 Score=36.66 Aligned_cols=26 Identities=31% Similarity=0.477 Sum_probs=21.0
Q ss_pred HHHHHHHcCCC--eEEEcCCCCchhHHh
Q psy7268 68 YSIPTLLSGKS--AILVAETGCGKTLSF 93 (134)
Q Consensus 68 ~~i~~~~~g~d--vli~a~tGsGKT~~~ 93 (134)
..+..+++|.| ++.-|.||||||...
T Consensus 453 ~~v~~~~~G~n~~i~ayGqtgsGKT~Tm 480 (715)
T 4h1g_A 453 QLIQCSLDGTNVCVFAYGQTGSGKTFTM 480 (715)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHhCCceEEEEccCCCCCchhhcc
Confidence 35677889987 677799999999874
No 336
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=81.43 E-value=2.5 Score=28.72 Aligned_cols=23 Identities=26% Similarity=0.336 Sum_probs=15.5
Q ss_pred CeEEEcCCCCchhHHhHHHHHHHH
Q psy7268 78 SAILVAETGCGKTLSFLAPLVQQI 101 (134)
Q Consensus 78 dvli~a~tGsGKT~~~~lpil~~~ 101 (134)
-+.+.+++|+|||... -.++..+
T Consensus 8 ~i~i~G~sGsGKTTl~-~~l~~~l 30 (174)
T 1np6_A 8 LLAFAAWSGTGKTTLL-KKLIPAL 30 (174)
T ss_dssp EEEEECCTTSCHHHHH-HHHHHHH
T ss_pred EEEEEeCCCCCHHHHH-HHHHHhc
Confidence 3678899999998542 3334433
No 337
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=81.41 E-value=0.61 Score=39.28 Aligned_cols=19 Identities=32% Similarity=0.443 Sum_probs=16.2
Q ss_pred cCCCeEEEcCCCCchhHHh
Q psy7268 75 SGKSAILVAETGCGKTLSF 93 (134)
Q Consensus 75 ~g~dvli~a~tGsGKT~~~ 93 (134)
.++.+++.||+|+|||...
T Consensus 237 ~~~~vLL~Gp~GtGKTtLa 255 (806)
T 1ypw_A 237 PPRGILLYGPPGTGKTLIA 255 (806)
T ss_dssp CCCEEEECSCTTSSHHHHH
T ss_pred CCCeEEEECcCCCCHHHHH
Confidence 4678999999999999654
No 338
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=81.27 E-value=0.84 Score=33.07 Aligned_cols=19 Identities=21% Similarity=0.503 Sum_probs=15.6
Q ss_pred cCCCeEEEcCCCCchhHHh
Q psy7268 75 SGKSAILVAETGCGKTLSF 93 (134)
Q Consensus 75 ~g~dvli~a~tGsGKT~~~ 93 (134)
.|.-+.+.||+|+|||...
T Consensus 31 ~Ge~~~liG~nGsGKSTLl 49 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFL 49 (262)
T ss_dssp TTCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5667889999999999653
No 339
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=81.15 E-value=0.84 Score=32.61 Aligned_cols=19 Identities=16% Similarity=0.137 Sum_probs=15.8
Q ss_pred cCCCeEEEcCCCCchhHHh
Q psy7268 75 SGKSAILVAETGCGKTLSF 93 (134)
Q Consensus 75 ~g~dvli~a~tGsGKT~~~ 93 (134)
.|.-+.+.||+|||||...
T Consensus 26 ~g~~I~I~G~~GsGKSTl~ 44 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLC 44 (252)
T ss_dssp TSCEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4567889999999999764
No 340
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=81.02 E-value=0.65 Score=30.89 Aligned_cols=19 Identities=21% Similarity=0.174 Sum_probs=11.1
Q ss_pred cCCCeEEEcCCCCchhHHh
Q psy7268 75 SGKSAILVAETGCGKTLSF 93 (134)
Q Consensus 75 ~g~dvli~a~tGsGKT~~~ 93 (134)
.+.-+++.|+.|||||...
T Consensus 4 ~~~~I~l~G~~GsGKST~a 22 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTA 22 (183)
T ss_dssp -CCEEEEECCC----CHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3556889999999999764
No 341
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=81.01 E-value=1.7 Score=34.03 Aligned_cols=16 Identities=38% Similarity=0.476 Sum_probs=13.5
Q ss_pred CeEEEcCCCCchhHHh
Q psy7268 78 SAILVAETGCGKTLSF 93 (134)
Q Consensus 78 dvli~a~tGsGKT~~~ 93 (134)
-+++.|++|+|||...
T Consensus 99 vI~lvG~~GsGKTTt~ 114 (433)
T 3kl4_A 99 IIMLVGVQGSGKTTTA 114 (433)
T ss_dssp EEEECCCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3788899999999765
No 342
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=80.95 E-value=0.84 Score=30.74 Aligned_cols=15 Identities=20% Similarity=0.317 Sum_probs=12.8
Q ss_pred eEEEcCCCCchhHHh
Q psy7268 79 AILVAETGCGKTLSF 93 (134)
Q Consensus 79 vli~a~tGsGKT~~~ 93 (134)
+++.|++|+|||...
T Consensus 3 I~i~G~~GsGKsT~~ 17 (205)
T 2jaq_A 3 IAIFGTVGAGKSTIS 17 (205)
T ss_dssp EEEECCTTSCHHHHH
T ss_pred EEEECCCccCHHHHH
Confidence 678999999999753
No 343
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=80.93 E-value=0.89 Score=32.63 Aligned_cols=19 Identities=26% Similarity=0.373 Sum_probs=15.9
Q ss_pred cCCCeEEEcCCCCchhHHh
Q psy7268 75 SGKSAILVAETGCGKTLSF 93 (134)
Q Consensus 75 ~g~dvli~a~tGsGKT~~~ 93 (134)
.|.-+.+.||+|+|||...
T Consensus 28 ~Ge~~~l~G~nGsGKSTLl 46 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLG 46 (250)
T ss_dssp TTCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5777889999999999654
No 344
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=80.89 E-value=0.71 Score=32.97 Aligned_cols=19 Identities=21% Similarity=0.368 Sum_probs=15.7
Q ss_pred cCCCeEEEcCCCCchhHHh
Q psy7268 75 SGKSAILVAETGCGKTLSF 93 (134)
Q Consensus 75 ~g~dvli~a~tGsGKT~~~ 93 (134)
.|.-+.+.||+|+|||...
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl 45 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIF 45 (243)
T ss_dssp TTEEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5667889999999999653
No 345
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=80.88 E-value=0.71 Score=34.25 Aligned_cols=16 Identities=38% Similarity=0.538 Sum_probs=13.6
Q ss_pred CeEEEcCCCCchhHHh
Q psy7268 78 SAILVAETGCGKTLSF 93 (134)
Q Consensus 78 dvli~a~tGsGKT~~~ 93 (134)
-+.+.||+|+|||...
T Consensus 102 vi~lvG~nGsGKTTll 117 (302)
T 3b9q_A 102 VIMIVGVNGGGKTTSL 117 (302)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 4778999999999764
No 346
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=80.86 E-value=0.89 Score=32.77 Aligned_cols=19 Identities=32% Similarity=0.503 Sum_probs=15.8
Q ss_pred cCCCeEEEcCCCCchhHHh
Q psy7268 75 SGKSAILVAETGCGKTLSF 93 (134)
Q Consensus 75 ~g~dvli~a~tGsGKT~~~ 93 (134)
.|.-+.+.||+|+|||...
T Consensus 25 ~Ge~~~liG~NGsGKSTLl 43 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLL 43 (249)
T ss_dssp TTCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCcHHHHH
Confidence 5777889999999999653
No 347
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=80.85 E-value=0.74 Score=34.89 Aligned_cols=15 Identities=33% Similarity=0.687 Sum_probs=12.9
Q ss_pred eEEEcCCCCchhHHh
Q psy7268 79 AILVAETGCGKTLSF 93 (134)
Q Consensus 79 vli~a~tGsGKT~~~ 93 (134)
.++.|+||+|||..+
T Consensus 28 ~vi~G~NGaGKT~il 42 (371)
T 3auy_A 28 VAIIGENGSGKSSIF 42 (371)
T ss_dssp EEEEECTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 578999999999774
No 348
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=80.79 E-value=0.89 Score=32.96 Aligned_cols=19 Identities=26% Similarity=0.564 Sum_probs=15.7
Q ss_pred cCCCeEEEcCCCCchhHHh
Q psy7268 75 SGKSAILVAETGCGKTLSF 93 (134)
Q Consensus 75 ~g~dvli~a~tGsGKT~~~ 93 (134)
.|.-+.+.||+|+|||...
T Consensus 32 ~Ge~~~liG~nGsGKSTLl 50 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLL 50 (266)
T ss_dssp TTCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCcHHHHH
Confidence 5677889999999999653
No 349
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=80.73 E-value=1.4 Score=42.59 Aligned_cols=20 Identities=35% Similarity=0.567 Sum_probs=17.3
Q ss_pred HHcCCCeEEEcCCCCchhHH
Q psy7268 73 LLSGKSAILVAETGCGKTLS 92 (134)
Q Consensus 73 ~~~g~dvli~a~tGsGKT~~ 92 (134)
+..|+.++++||||+|||..
T Consensus 1301 l~~~~pvLL~GptGtGKT~l 1320 (3245)
T 3vkg_A 1301 LSEHRPLILCGPPGSGKTMT 1320 (3245)
T ss_dssp HHTTCCCEEESSTTSSHHHH
T ss_pred HHCCCcEEEECCCCCCHHHH
Confidence 44789999999999999953
No 350
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=80.64 E-value=0.9 Score=32.98 Aligned_cols=19 Identities=21% Similarity=0.392 Sum_probs=15.9
Q ss_pred cCCCeEEEcCCCCchhHHh
Q psy7268 75 SGKSAILVAETGCGKTLSF 93 (134)
Q Consensus 75 ~g~dvli~a~tGsGKT~~~ 93 (134)
.|.-+.+.||+|+|||...
T Consensus 45 ~Ge~~~l~G~NGsGKSTLl 63 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLS 63 (267)
T ss_dssp TTCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5777889999999999654
No 351
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=80.58 E-value=0.9 Score=29.76 Aligned_cols=16 Identities=19% Similarity=0.071 Sum_probs=13.3
Q ss_pred CeEEEcCCCCchhHHh
Q psy7268 78 SAILVAETGCGKTLSF 93 (134)
Q Consensus 78 dvli~a~tGsGKT~~~ 93 (134)
.+++.|+.|||||...
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVG 17 (168)
T ss_dssp EEEEESCTTSCHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 3788999999999763
No 352
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=80.57 E-value=0.73 Score=31.53 Aligned_cols=19 Identities=21% Similarity=-0.022 Sum_probs=15.1
Q ss_pred cCCCeEEEcCCCCchhHHh
Q psy7268 75 SGKSAILVAETGCGKTLSF 93 (134)
Q Consensus 75 ~g~dvli~a~tGsGKT~~~ 93 (134)
.+.-+.+.|++|+|||...
T Consensus 20 ~~~~i~i~G~~GsGKSTl~ 38 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLA 38 (207)
T ss_dssp CCEEEEEEESTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 4556789999999999654
No 353
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=80.54 E-value=0.92 Score=33.04 Aligned_cols=19 Identities=37% Similarity=0.532 Sum_probs=15.9
Q ss_pred cCCCeEEEcCCCCchhHHh
Q psy7268 75 SGKSAILVAETGCGKTLSF 93 (134)
Q Consensus 75 ~g~dvli~a~tGsGKT~~~ 93 (134)
.|.-+.+.||+|+|||...
T Consensus 44 ~Ge~~~i~G~nGsGKSTLl 62 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVA 62 (271)
T ss_dssp TTCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5777889999999999643
No 354
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=80.52 E-value=2.7 Score=29.34 Aligned_cols=35 Identities=14% Similarity=0.160 Sum_probs=25.4
Q ss_pred CCCeEEEcCCCCchhHHhHHHHHHHHHhhcCCCCCCCCCCCcEEEEE
Q psy7268 76 GKSAILVAETGCGKTLSFLAPLVQQILTWKSRPEYKPELNAPLALII 122 (134)
Q Consensus 76 g~dvli~a~tGsGKT~~~~lpil~~~~~~~~~~~~~~~~~~~~~lil 122 (134)
...+++...+|.|||.+.+--.+..+- .|.+++++
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g------------~G~rV~~v 62 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVG------------HGKNVGVV 62 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHH------------TTCCEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHH------------CCCeEEEE
Confidence 347899999999999888555555443 46667776
No 355
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=80.44 E-value=1.4 Score=32.82 Aligned_cols=39 Identities=18% Similarity=0.255 Sum_probs=24.6
Q ss_pred hHHHHHHHHHH----HcCC---CeEEEcCCCCchhHHhHHHHHHHHH
Q psy7268 63 TEIQKYSIPTL----LSGK---SAILVAETGCGKTLSFLAPLVQQIL 102 (134)
Q Consensus 63 t~iQ~~~i~~~----~~g~---dvli~a~tGsGKT~~~~lpil~~~~ 102 (134)
.|.|..++..+ .+|+ -+++.||.|+|||... ..+...+.
T Consensus 4 ~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a-~~la~~l~ 49 (334)
T 1a5t_A 4 YPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALI-YALSRYLL 49 (334)
T ss_dssp CGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHH-HHHHHHHT
T ss_pred CCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHH-HHHHHHHh
Confidence 45566665443 3454 3899999999999665 33444443
No 356
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=80.32 E-value=0.87 Score=30.39 Aligned_cols=15 Identities=27% Similarity=0.266 Sum_probs=12.7
Q ss_pred eEEEcCCCCchhHHh
Q psy7268 79 AILVAETGCGKTLSF 93 (134)
Q Consensus 79 vli~a~tGsGKT~~~ 93 (134)
+.+.|+.|||||...
T Consensus 3 I~l~G~~GsGKsT~~ 17 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQA 17 (195)
T ss_dssp EEEECSTTSCHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 678999999999753
No 357
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=80.25 E-value=1.5 Score=33.57 Aligned_cols=19 Identities=32% Similarity=0.522 Sum_probs=16.0
Q ss_pred cCCC--eEEEcCCCCchhHHh
Q psy7268 75 SGKS--AILVAETGCGKTLSF 93 (134)
Q Consensus 75 ~g~d--vli~a~tGsGKT~~~ 93 (134)
.|.+ ++.-|.||||||...
T Consensus 82 ~G~n~tifAYGqTGSGKTyTM 102 (360)
T 1ry6_A 82 NGCVCSCFAYGQTGSGKTYTM 102 (360)
T ss_dssp HCCEEEEEEECCTTSSHHHHH
T ss_pred CCceeEEEeeCCCCCCCCEEE
Confidence 4776 688899999999875
No 358
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=80.25 E-value=0.9 Score=31.45 Aligned_cols=15 Identities=20% Similarity=0.598 Sum_probs=12.8
Q ss_pred eEEEcCCCCchhHHh
Q psy7268 79 AILVAETGCGKTLSF 93 (134)
Q Consensus 79 vli~a~tGsGKT~~~ 93 (134)
.++.||+|+|||..+
T Consensus 26 ~~I~G~NgsGKStil 40 (203)
T 3qks_A 26 NLIIGQNGSGKSSLL 40 (203)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEEcCCCCCHHHHH
Confidence 578899999999774
No 359
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=80.19 E-value=0.96 Score=32.89 Aligned_cols=19 Identities=21% Similarity=0.571 Sum_probs=15.8
Q ss_pred cCCCeEEEcCCCCchhHHh
Q psy7268 75 SGKSAILVAETGCGKTLSF 93 (134)
Q Consensus 75 ~g~dvli~a~tGsGKT~~~ 93 (134)
.|.-+.+.||+|+|||...
T Consensus 49 ~Gei~~liG~NGsGKSTLl 67 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFL 67 (263)
T ss_dssp TTCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEEcCCCCcHHHHH
Confidence 5677889999999999654
No 360
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=80.16 E-value=0.94 Score=32.65 Aligned_cols=19 Identities=26% Similarity=0.662 Sum_probs=15.7
Q ss_pred cCCCeEEEcCCCCchhHHh
Q psy7268 75 SGKSAILVAETGCGKTLSF 93 (134)
Q Consensus 75 ~g~dvli~a~tGsGKT~~~ 93 (134)
.|.-+.+.||+|+|||...
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl 48 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLL 48 (253)
T ss_dssp TTCEEEEECCSSSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5677889999999999653
No 361
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=80.10 E-value=0.97 Score=32.70 Aligned_cols=19 Identities=32% Similarity=0.503 Sum_probs=15.8
Q ss_pred cCCCeEEEcCCCCchhHHh
Q psy7268 75 SGKSAILVAETGCGKTLSF 93 (134)
Q Consensus 75 ~g~dvli~a~tGsGKT~~~ 93 (134)
.|.-+.+.||+|+|||...
T Consensus 40 ~Gei~~l~G~NGsGKSTLl 58 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTL 58 (256)
T ss_dssp TTCEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 5677889999999999653
No 362
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=80.08 E-value=3 Score=33.08 Aligned_cols=44 Identities=16% Similarity=0.281 Sum_probs=31.1
Q ss_pred cCCCeEEEcCCCCchhHHhHHHHHHHHHhhcCCCCCCCCCCCcEEEEEcCcHHHHHHhc
Q psy7268 75 SGKSAILVAETGCGKTLSFLAPLVQQILTWKSRPEYKPELNAPLALIITPGRELVFQIG 133 (134)
Q Consensus 75 ~g~dvli~a~tGsGKT~~~~lpil~~~~~~~~~~~~~~~~~~~~~lil~Pt~~La~Qi~ 133 (134)
.|....+.+-+|+||++... .++.. .+...|||+|+...|.|++
T Consensus 13 ~~~~~~l~g~~gs~ka~~~a-~l~~~--------------~~~p~lvv~~~~~~A~~l~ 56 (483)
T 3hjh_A 13 AGEQRLLGELTGAACATLVA-EIAER--------------HAGPVVLIAPDMQNALRLH 56 (483)
T ss_dssp TTCEEEEECCCTTHHHHHHH-HHHHH--------------SSSCEEEEESSHHHHHHHH
T ss_pred CCCeEEEeCCCchHHHHHHH-HHHHH--------------hCCCEEEEeCCHHHHHHHH
Confidence 45668899999999986542 11211 1223889999999999876
No 363
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=79.84 E-value=0.99 Score=33.08 Aligned_cols=19 Identities=37% Similarity=0.471 Sum_probs=15.8
Q ss_pred cCCCeEEEcCCCCchhHHh
Q psy7268 75 SGKSAILVAETGCGKTLSF 93 (134)
Q Consensus 75 ~g~dvli~a~tGsGKT~~~ 93 (134)
.|.-+.+.||+|+|||...
T Consensus 46 ~Ge~~~liG~NGsGKSTLl 64 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLL 64 (279)
T ss_dssp TTCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCcHHHHH
Confidence 5777889999999999653
No 364
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=79.82 E-value=1 Score=31.53 Aligned_cols=19 Identities=32% Similarity=0.503 Sum_probs=15.5
Q ss_pred cCCCeEEEcCCCCchhHHh
Q psy7268 75 SGKSAILVAETGCGKTLSF 93 (134)
Q Consensus 75 ~g~dvli~a~tGsGKT~~~ 93 (134)
.+..+++.|++|||||...
T Consensus 15 ~~~~I~l~G~~GsGKsT~a 33 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQA 33 (233)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3457999999999999753
No 365
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=79.78 E-value=0.88 Score=30.44 Aligned_cols=18 Identities=28% Similarity=0.302 Sum_probs=14.9
Q ss_pred cCCCeEEEcCCCCchhHH
Q psy7268 75 SGKSAILVAETGCGKTLS 92 (134)
Q Consensus 75 ~g~dvli~a~tGsGKT~~ 92 (134)
.|.-+.+.+|+|+|||..
T Consensus 32 ~Ge~v~L~G~nGaGKTTL 49 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTL 49 (158)
T ss_dssp SCEEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 566688999999999954
No 366
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=79.78 E-value=1.6 Score=36.27 Aligned_cols=16 Identities=44% Similarity=0.457 Sum_probs=14.3
Q ss_pred CeEEEcCCCCchhHHh
Q psy7268 78 SAILVAETGCGKTLSF 93 (134)
Q Consensus 78 dvli~a~tGsGKT~~~ 93 (134)
.+++.||+|+|||...
T Consensus 523 ~~Ll~Gp~GtGKT~lA 538 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELA 538 (758)
T ss_dssp EEEEESCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4999999999999765
No 367
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=79.75 E-value=0.57 Score=33.47 Aligned_cols=17 Identities=29% Similarity=0.425 Sum_probs=14.2
Q ss_pred CCeEEEcCCCCchhHHh
Q psy7268 77 KSAILVAETGCGKTLSF 93 (134)
Q Consensus 77 ~dvli~a~tGsGKT~~~ 93 (134)
.-+++.|++|||||...
T Consensus 33 ~~i~l~G~~GsGKSTla 49 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIH 49 (253)
T ss_dssp EEEEEESCGGGTTHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35889999999999754
No 368
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=79.67 E-value=1.9 Score=34.16 Aligned_cols=30 Identities=30% Similarity=0.428 Sum_probs=21.9
Q ss_pred HcCCCeEEEcCCCCchhHHhHHHHHHHHHh
Q psy7268 74 LSGKSAILVAETGCGKTLSFLAPLVQQILT 103 (134)
Q Consensus 74 ~~g~dvli~a~tGsGKT~~~~lpil~~~~~ 103 (134)
..|.-+.+.+|+|+|||.....-++..+..
T Consensus 37 ~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~ 66 (525)
T 1tf7_A 37 PIGRSTLVSGTSGTGKTLFSIQFLYNGIIE 66 (525)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHh
Confidence 357789999999999997765544444443
No 369
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=79.65 E-value=0.85 Score=38.60 Aligned_cols=17 Identities=35% Similarity=0.518 Sum_probs=15.0
Q ss_pred CCeEEEcCCCCchhHHh
Q psy7268 77 KSAILVAETGCGKTLSF 93 (134)
Q Consensus 77 ~dvli~a~tGsGKT~~~ 93 (134)
+.+++.||+|+|||+..
T Consensus 239 ~GILL~GPPGTGKT~LA 255 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLIA 255 (806)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 56999999999999764
No 370
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=79.57 E-value=0.95 Score=30.37 Aligned_cols=15 Identities=20% Similarity=0.321 Sum_probs=12.8
Q ss_pred eEEEcCCCCchhHHh
Q psy7268 79 AILVAETGCGKTLSF 93 (134)
Q Consensus 79 vli~a~tGsGKT~~~ 93 (134)
+.+.|+.|||||...
T Consensus 3 I~l~G~~GsGKsT~~ 17 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQI 17 (197)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 678899999999764
No 371
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=79.51 E-value=1 Score=29.67 Aligned_cols=17 Identities=24% Similarity=0.350 Sum_probs=14.5
Q ss_pred CCeEEEcCCCCchhHHh
Q psy7268 77 KSAILVAETGCGKTLSF 93 (134)
Q Consensus 77 ~dvli~a~tGsGKT~~~ 93 (134)
.++++.|+.|||||...
T Consensus 8 ~~i~l~G~~GsGKSTva 24 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLA 24 (168)
T ss_dssp CEEEEESCTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 46889999999999764
No 372
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=79.44 E-value=2.4 Score=31.49 Aligned_cols=16 Identities=38% Similarity=0.490 Sum_probs=13.3
Q ss_pred CeEEEcCCCCchhHHh
Q psy7268 78 SAILVAETGCGKTLSF 93 (134)
Q Consensus 78 dvli~a~tGsGKT~~~ 93 (134)
-+++.+++|+|||...
T Consensus 106 vi~ivG~~GsGKTTl~ 121 (306)
T 1vma_A 106 VIMVVGVNGTGKTTSC 121 (306)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEEcCCCChHHHHH
Confidence 3778999999999764
No 373
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=79.38 E-value=0.95 Score=37.47 Aligned_cols=19 Identities=37% Similarity=0.529 Sum_probs=16.0
Q ss_pred cCCCeEEEcCCCCchhHHh
Q psy7268 75 SGKSAILVAETGCGKTLSF 93 (134)
Q Consensus 75 ~g~dvli~a~tGsGKT~~~ 93 (134)
.+.++++.|++|+|||...
T Consensus 206 ~~~~vlL~G~~GtGKT~la 224 (758)
T 1r6b_X 206 RKNNPLLVGESGVGKTAIA 224 (758)
T ss_dssp SSCEEEEECCTTSSHHHHH
T ss_pred CCCCeEEEcCCCCCHHHHH
Confidence 3567999999999999764
No 374
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=79.34 E-value=0.95 Score=33.85 Aligned_cols=16 Identities=19% Similarity=0.478 Sum_probs=13.3
Q ss_pred eEEEcCCCCchhHHhH
Q psy7268 79 AILVAETGCGKTLSFL 94 (134)
Q Consensus 79 vli~a~tGsGKT~~~~ 94 (134)
.++.||+|+|||...-
T Consensus 26 ~~i~G~NGsGKS~lle 41 (339)
T 3qkt_A 26 NLIIGQNGSGKSSLLD 41 (339)
T ss_dssp EEEECCTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 4689999999998753
No 375
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=79.24 E-value=2.3 Score=30.35 Aligned_cols=38 Identities=11% Similarity=0.153 Sum_probs=23.9
Q ss_pred CCCeEEEcCCCCchhHHhHHHHHHHHHhhcCCCCCCCCCCCcEEEEEcCc
Q psy7268 76 GKSAILVAETGCGKTLSFLAPLVQQILTWKSRPEYKPELNAPLALIITPG 125 (134)
Q Consensus 76 g~dvli~a~tGsGKT~~~~lpil~~~~~~~~~~~~~~~~~~~~~lil~Pt 125 (134)
|.=.++.++-|+|||... +-.+.+... .+.+++++.|.
T Consensus 28 G~I~vitG~M~sGKTT~L-lr~~~r~~~-----------~g~kvli~kp~ 65 (219)
T 3e2i_A 28 GWIECITGSMFSGKSEEL-IRRLRRGIY-----------AKQKVVVFKPA 65 (219)
T ss_dssp CEEEEEEECTTSCHHHHH-HHHHHHHHH-----------TTCCEEEEEEC
T ss_pred ceEEEEECCCCCCHHHHH-HHHHHHHHH-----------cCCceEEEEec
Confidence 444678899999999655 333444433 34456666664
No 376
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=79.20 E-value=1.6 Score=34.44 Aligned_cols=26 Identities=12% Similarity=0.105 Sum_probs=18.4
Q ss_pred cCCCeEEEcCCCCchhHHhHHHHHHHH
Q psy7268 75 SGKSAILVAETGCGKTLSFLAPLVQQI 101 (134)
Q Consensus 75 ~g~dvli~a~tGsGKT~~~~lpil~~~ 101 (134)
.|.-+++.|++|+|||... +-++..+
T Consensus 241 ~G~l~li~G~pG~GKT~la-l~~a~~~ 266 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFV-RQQALQW 266 (503)
T ss_dssp TTCEEEEEESSCHHHHHHH-HHHHHHH
T ss_pred CCeEEEEeecCCCCchHHH-HHHHHHH
Confidence 4556899999999999655 4444444
No 377
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=78.96 E-value=0.99 Score=30.91 Aligned_cols=18 Identities=17% Similarity=-0.090 Sum_probs=14.3
Q ss_pred CCCeEEEcCCCCchhHHh
Q psy7268 76 GKSAILVAETGCGKTLSF 93 (134)
Q Consensus 76 g~dvli~a~tGsGKT~~~ 93 (134)
+.-+.+.|++|+|||...
T Consensus 22 ~~~i~i~G~~GsGKstl~ 39 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLA 39 (201)
T ss_dssp SEEEEEEECTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 344788999999999764
No 378
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=78.81 E-value=0.96 Score=36.08 Aligned_cols=48 Identities=29% Similarity=0.306 Sum_probs=31.0
Q ss_pred CCCCcccCCCCHHHHHHHHHCC--CCCChHHHHHHHHHHHc------CCCeEEEcCCCCchhHHh
Q psy7268 37 DLGTFEDTGLAPEIIDIFTKRG--LTTPTEIQKYSIPTLLS------GKSAILVAETGCGKTLSF 93 (134)
Q Consensus 37 ~~~~f~~~~l~~~i~~~l~~~g--~~~~t~iQ~~~i~~~~~------g~dvli~a~tGsGKT~~~ 93 (134)
+-.+|+++.-.++....+.+.- +.. +..+. .+.+++.+|+|+|||+..
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~l~~---------~~~~~~lg~~ip~GvLL~GppGtGKTtLa 81 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEFLKN---------PSRFHEMGARIPKGVLLVGPPGVGKTHLA 81 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHHHHC---------GGGTTTTSCCCCSEEEEECSSSSSHHHHH
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHHhhc---------hhhhhhccCCCCceEEEECCCCCCHHHHH
Confidence 3457888887777777776531 111 11111 234999999999999764
No 379
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=78.80 E-value=1.1 Score=31.08 Aligned_cols=18 Identities=28% Similarity=0.453 Sum_probs=14.7
Q ss_pred CCCeEEEcCCCCchhHHh
Q psy7268 76 GKSAILVAETGCGKTLSF 93 (134)
Q Consensus 76 g~dvli~a~tGsGKT~~~ 93 (134)
+..+++.|++|||||...
T Consensus 5 ~~~I~l~G~~GsGKsT~a 22 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQC 22 (217)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 446889999999999753
No 380
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=78.78 E-value=1 Score=31.04 Aligned_cols=15 Identities=27% Similarity=0.270 Sum_probs=13.0
Q ss_pred eEEEcCCCCchhHHh
Q psy7268 79 AILVAETGCGKTLSF 93 (134)
Q Consensus 79 vli~a~tGsGKT~~~ 93 (134)
+++.|++|||||...
T Consensus 3 I~l~G~~GsGKsT~a 17 (214)
T 1e4v_A 3 IILLGAPVAGKGTQA 17 (214)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 788999999999763
No 381
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=78.58 E-value=1.1 Score=32.55 Aligned_cols=16 Identities=19% Similarity=0.225 Sum_probs=13.6
Q ss_pred CeEEEcCCCCchhHHh
Q psy7268 78 SAILVAETGCGKTLSF 93 (134)
Q Consensus 78 dvli~a~tGsGKT~~~ 93 (134)
-+++.|++|||||...
T Consensus 4 ~I~l~G~~GsGKST~a 19 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWA 19 (301)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3789999999999764
No 382
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=78.46 E-value=1.8 Score=35.84 Aligned_cols=16 Identities=38% Similarity=0.422 Sum_probs=14.3
Q ss_pred CeEEEcCCCCchhHHh
Q psy7268 78 SAILVAETGCGKTLSF 93 (134)
Q Consensus 78 dvli~a~tGsGKT~~~ 93 (134)
++++.||+|+|||...
T Consensus 490 ~~ll~G~~GtGKT~la 505 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVT 505 (758)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 5999999999999765
No 383
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=78.29 E-value=1.1 Score=31.20 Aligned_cols=15 Identities=20% Similarity=0.324 Sum_probs=12.9
Q ss_pred eEEEcCCCCchhHHh
Q psy7268 79 AILVAETGCGKTLSF 93 (134)
Q Consensus 79 vli~a~tGsGKT~~~ 93 (134)
+++.|++|||||...
T Consensus 3 I~l~G~~GsGKsT~a 17 (223)
T 2xb4_A 3 ILIFGPNGSGKGTQG 17 (223)
T ss_dssp EEEECCTTSCHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 688999999999763
No 384
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=78.02 E-value=1.1 Score=31.72 Aligned_cols=18 Identities=22% Similarity=0.307 Sum_probs=14.9
Q ss_pred CCCeEEEcCCCCchhHHh
Q psy7268 76 GKSAILVAETGCGKTLSF 93 (134)
Q Consensus 76 g~dvli~a~tGsGKT~~~ 93 (134)
+..+++.|++|||||...
T Consensus 29 ~~~I~l~G~~GsGKsT~a 46 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQS 46 (243)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 446899999999999764
No 385
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=77.79 E-value=1.1 Score=33.40 Aligned_cols=19 Identities=32% Similarity=0.601 Sum_probs=16.1
Q ss_pred cCCCeEEEcCCCCchhHHh
Q psy7268 75 SGKSAILVAETGCGKTLSF 93 (134)
Q Consensus 75 ~g~dvli~a~tGsGKT~~~ 93 (134)
.|.-+.+.||+|+|||...
T Consensus 79 ~Ge~vaivG~sGsGKSTLl 97 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTIL 97 (306)
T ss_dssp TTCEEEEESSSCHHHHHHH
T ss_pred CCCEEEEECCCCchHHHHH
Confidence 5778999999999999653
No 386
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=77.65 E-value=1.1 Score=31.37 Aligned_cols=15 Identities=20% Similarity=0.406 Sum_probs=12.3
Q ss_pred eEEEcCCCCchhHHh
Q psy7268 79 AILVAETGCGKTLSF 93 (134)
Q Consensus 79 vli~a~tGsGKT~~~ 93 (134)
+++.||+||||+.-.
T Consensus 3 Iil~GpPGsGKgTqa 17 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQA 17 (206)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 678899999998643
No 387
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=77.64 E-value=1.2 Score=30.08 Aligned_cols=16 Identities=19% Similarity=0.208 Sum_probs=13.5
Q ss_pred CeEEEcCCCCchhHHh
Q psy7268 78 SAILVAETGCGKTLSF 93 (134)
Q Consensus 78 dvli~a~tGsGKT~~~ 93 (134)
-+.+.+++|||||...
T Consensus 10 ~I~i~G~~GsGKST~~ 25 (203)
T 1uf9_A 10 IIGITGNIGSGKSTVA 25 (203)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3788999999999764
No 388
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=77.58 E-value=1.2 Score=32.84 Aligned_cols=19 Identities=32% Similarity=0.459 Sum_probs=15.9
Q ss_pred cCCCeEEEcCCCCchhHHh
Q psy7268 75 SGKSAILVAETGCGKTLSF 93 (134)
Q Consensus 75 ~g~dvli~a~tGsGKT~~~ 93 (134)
.|.-+.+.||+|+|||...
T Consensus 63 ~Ge~~~i~G~NGsGKSTLl 81 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLL 81 (290)
T ss_dssp TTCEEEEEESTTSSHHHHH
T ss_pred CCCEEEEECCCCCcHHHHH
Confidence 5677889999999999654
No 389
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=77.46 E-value=3 Score=31.13 Aligned_cols=15 Identities=47% Similarity=0.623 Sum_probs=12.8
Q ss_pred eEEEcCCCCchhHHh
Q psy7268 79 AILVAETGCGKTLSF 93 (134)
Q Consensus 79 vli~a~tGsGKT~~~ 93 (134)
+.+.+++|+|||...
T Consensus 108 I~ivG~~G~GKTT~~ 122 (320)
T 1zu4_A 108 FMLVGVNGTGKTTSL 122 (320)
T ss_dssp EEEESSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 678899999999764
No 390
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=77.27 E-value=2.7 Score=39.10 Aligned_cols=27 Identities=19% Similarity=0.186 Sum_probs=21.2
Q ss_pred cCCCeEEEcCCCCchhHHhHHHHHHHH
Q psy7268 75 SGKSAILVAETGCGKTLSFLAPLVQQI 101 (134)
Q Consensus 75 ~g~dvli~a~tGsGKT~~~~lpil~~~ 101 (134)
.|+.+++.+++|+|||.....-+.+..
T Consensus 1080 ~g~~vll~G~~GtGKT~la~~~~~ea~ 1106 (2050)
T 3cmu_A 1080 MGRIVEIYGPESSGKTTLTLQVIAAAQ 1106 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 578899999999999987755555444
No 391
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=77.13 E-value=1.2 Score=32.26 Aligned_cols=18 Identities=33% Similarity=0.643 Sum_probs=15.0
Q ss_pred CCCeEEEcCCCCchhHHh
Q psy7268 76 GKSAILVAETGCGKTLSF 93 (134)
Q Consensus 76 g~dvli~a~tGsGKT~~~ 93 (134)
|.-+.+.+|+|+|||..+
T Consensus 30 Ge~~~i~G~NGsGKSTLl 47 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLL 47 (263)
T ss_dssp SSEEEEECCTTSSHHHHH
T ss_pred CEEEEEECCCCCCHHHHH
Confidence 666889999999999654
No 392
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=77.12 E-value=1.3 Score=30.52 Aligned_cols=17 Identities=24% Similarity=0.235 Sum_probs=13.9
Q ss_pred CCeEEEcCCCCchhHHh
Q psy7268 77 KSAILVAETGCGKTLSF 93 (134)
Q Consensus 77 ~dvli~a~tGsGKT~~~ 93 (134)
.-+.+.|+.|||||...
T Consensus 5 ~~I~i~G~~GSGKST~~ 21 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVA 21 (218)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 34788999999999763
No 393
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=77.07 E-value=1.2 Score=37.56 Aligned_cols=16 Identities=38% Similarity=0.432 Sum_probs=14.2
Q ss_pred CeEEEcCCCCchhHHh
Q psy7268 78 SAILVAETGCGKTLSF 93 (134)
Q Consensus 78 dvli~a~tGsGKT~~~ 93 (134)
.+++.||+|+|||...
T Consensus 590 ~vLl~Gp~GtGKT~lA 605 (854)
T 1qvr_A 590 SFLFLGPTGVGKTELA 605 (854)
T ss_dssp EEEEBSCSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5899999999999764
No 394
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=77.03 E-value=2.7 Score=30.29 Aligned_cols=39 Identities=15% Similarity=0.244 Sum_probs=23.7
Q ss_pred cCCCeEEEcCCCCchhHHhHHHHHHHHHhhcCCCCCCCCCCCcEEEEEcCc
Q psy7268 75 SGKSAILVAETGCGKTLSFLAPLVQQILTWKSRPEYKPELNAPLALIITPG 125 (134)
Q Consensus 75 ~g~dvli~a~tGsGKT~~~~lpil~~~~~~~~~~~~~~~~~~~~~lil~Pt 125 (134)
.|.=.++.|+-|+|||...+ -.+.+... .+.+++++-|.
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL-~~~~r~~~-----------~g~kvli~kp~ 56 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELM-RRVRRFQI-----------AQYKCLVIKYA 56 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHH-HHHHHHHT-----------TTCCEEEEEET
T ss_pred ceEEEEEECCCCCcHHHHHH-HHHHHHHH-----------CCCeEEEEeec
Confidence 35546778888999996653 33333332 34556666554
No 395
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=77.03 E-value=2.6 Score=31.22 Aligned_cols=15 Identities=33% Similarity=0.461 Sum_probs=12.5
Q ss_pred eEEEcCCCCchhHHh
Q psy7268 79 AILVAETGCGKTLSF 93 (134)
Q Consensus 79 vli~a~tGsGKT~~~ 93 (134)
+++.|+.|+|||...
T Consensus 7 ~~i~G~~GaGKTTll 21 (318)
T 1nij_A 7 TLLTGFLGAGKTTLL 21 (318)
T ss_dssp EEEEESSSSSCHHHH
T ss_pred EEEEecCCCCHHHHH
Confidence 578899999999653
No 396
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=76.97 E-value=1.1 Score=34.28 Aligned_cols=16 Identities=38% Similarity=0.538 Sum_probs=13.6
Q ss_pred CeEEEcCCCCchhHHh
Q psy7268 78 SAILVAETGCGKTLSF 93 (134)
Q Consensus 78 dvli~a~tGsGKT~~~ 93 (134)
-+.+.|++|+|||...
T Consensus 159 vi~lvG~nGsGKTTll 174 (359)
T 2og2_A 159 VIMIVGVNGGGKTTSL 174 (359)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEEcCCCChHHHHH
Confidence 4778999999999764
No 397
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=76.47 E-value=3.4 Score=32.74 Aligned_cols=21 Identities=29% Similarity=0.360 Sum_probs=16.8
Q ss_pred HcCCCeEEEcCCCCchhHHhH
Q psy7268 74 LSGKSAILVAETGCGKTLSFL 94 (134)
Q Consensus 74 ~~g~dvli~a~tGsGKT~~~~ 94 (134)
..|.-+.+.+++|+|||....
T Consensus 279 ~~G~i~~i~G~~GsGKSTLl~ 299 (525)
T 1tf7_A 279 FKDSIILATGATGTGKTLLVS 299 (525)
T ss_dssp ESSCEEEEEECTTSSHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHH
Confidence 356778999999999996543
No 398
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=76.37 E-value=1.4 Score=33.79 Aligned_cols=19 Identities=16% Similarity=0.099 Sum_probs=15.9
Q ss_pred cCCCeEEEcCCCCchhHHh
Q psy7268 75 SGKSAILVAETGCGKTLSF 93 (134)
Q Consensus 75 ~g~dvli~a~tGsGKT~~~ 93 (134)
.|+-+.+.||+|+|||...
T Consensus 168 ~~~~i~l~G~~GsGKSTl~ 186 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLA 186 (377)
T ss_dssp TCCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5677999999999998653
No 399
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=76.30 E-value=1.2 Score=31.49 Aligned_cols=18 Identities=22% Similarity=0.368 Sum_probs=13.7
Q ss_pred CCCeEEEcCCCCchhHHh
Q psy7268 76 GKSAILVAETGCGKTLSF 93 (134)
Q Consensus 76 g~dvli~a~tGsGKT~~~ 93 (134)
.+-+++.||+||||+.-.
T Consensus 29 ~kiI~llGpPGsGKgTqa 46 (217)
T 3umf_A 29 AKVIFVLGGPGSGKGTQC 46 (217)
T ss_dssp CEEEEEECCTTCCHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 344778899999997643
No 400
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=76.23 E-value=0.88 Score=30.88 Aligned_cols=16 Identities=25% Similarity=0.281 Sum_probs=12.9
Q ss_pred CeEEEcCCCCchhHHh
Q psy7268 78 SAILVAETGCGKTLSF 93 (134)
Q Consensus 78 dvli~a~tGsGKT~~~ 93 (134)
-+.+.+++|+|||...
T Consensus 4 ~v~IvG~SGsGKSTL~ 19 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLI 19 (171)
T ss_dssp EEEEEESCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3668899999999664
No 401
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=76.20 E-value=1.2 Score=33.19 Aligned_cols=18 Identities=11% Similarity=0.008 Sum_probs=14.2
Q ss_pred CCCeEEEcCCCCchhHHh
Q psy7268 76 GKSAILVAETGCGKTLSF 93 (134)
Q Consensus 76 g~dvli~a~tGsGKT~~~ 93 (134)
|.-+.+.||+|+|||...
T Consensus 90 g~ivgI~G~sGsGKSTL~ 107 (312)
T 3aez_A 90 PFIIGVAGSVAVGKSTTA 107 (312)
T ss_dssp CEEEEEECCTTSCHHHHH
T ss_pred CEEEEEECCCCchHHHHH
Confidence 344778899999999664
No 402
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=76.07 E-value=1.4 Score=31.85 Aligned_cols=16 Identities=38% Similarity=0.466 Sum_probs=14.0
Q ss_pred CeEEEcCCCCchhHHh
Q psy7268 78 SAILVAETGCGKTLSF 93 (134)
Q Consensus 78 dvli~a~tGsGKT~~~ 93 (134)
++++.||+|+|||...
T Consensus 44 ~~ll~G~~G~GKt~la 59 (323)
T 1sxj_B 44 HMIISGMPGIGKTTSV 59 (323)
T ss_dssp CEEEECSTTSSHHHHH
T ss_pred eEEEECcCCCCHHHHH
Confidence 4999999999999664
No 403
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=75.99 E-value=10 Score=29.71 Aligned_cols=34 Identities=18% Similarity=0.328 Sum_probs=26.0
Q ss_pred CChHHHHHHHHHHH---cCCCeEEEcCCCCchhHHhH
Q psy7268 61 TPTEIQKYSIPTLL---SGKSAILVAETGCGKTLSFL 94 (134)
Q Consensus 61 ~~t~iQ~~~i~~~~---~g~dvli~a~tGsGKT~~~~ 94 (134)
.|-..--++|..++ .|..+.+.+++|+|||....
T Consensus 156 ~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~ 192 (422)
T 3ice_A 156 STEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQ 192 (422)
T ss_dssp CTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHH
T ss_pred CcccccceeeeeeeeecCCcEEEEecCCCCChhHHHH
Confidence 34556667776655 68899999999999997653
No 404
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=75.96 E-value=1.2 Score=31.43 Aligned_cols=19 Identities=16% Similarity=-0.010 Sum_probs=15.0
Q ss_pred cCCCeEEEcCCCCchhHHh
Q psy7268 75 SGKSAILVAETGCGKTLSF 93 (134)
Q Consensus 75 ~g~dvli~a~tGsGKT~~~ 93 (134)
.|.-+-+.||+|+|||...
T Consensus 24 ~g~iigI~G~~GsGKSTl~ 42 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVC 42 (245)
T ss_dssp CSEEEEEECSTTSSHHHHH
T ss_pred CCEEEEEECCCCCCHHHHH
Confidence 4445778899999999764
No 405
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=75.69 E-value=1.4 Score=31.41 Aligned_cols=17 Identities=29% Similarity=0.587 Sum_probs=13.4
Q ss_pred CCeEEEcCCCCchhHHh
Q psy7268 77 KSAILVAETGCGKTLSF 93 (134)
Q Consensus 77 ~dvli~a~tGsGKT~~~ 93 (134)
.-+.+.||+|+|||...
T Consensus 25 e~~~liG~nGsGKSTLl 41 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFL 41 (240)
T ss_dssp SEEEEECCTTSSHHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 34668899999999654
No 406
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=75.57 E-value=0.7 Score=31.55 Aligned_cols=15 Identities=20% Similarity=0.253 Sum_probs=12.6
Q ss_pred eEEEcCCCCchhHHh
Q psy7268 79 AILVAETGCGKTLSF 93 (134)
Q Consensus 79 vli~a~tGsGKT~~~ 93 (134)
+.+.|++|||||...
T Consensus 3 I~i~G~~GsGKsTl~ 17 (214)
T 1gtv_A 3 IAIEGVDGAGKRTLV 17 (214)
T ss_dssp EEEEEEEEEEHHHHH
T ss_pred EEEEcCCCCCHHHHH
Confidence 678999999999654
No 407
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=75.53 E-value=2 Score=31.22 Aligned_cols=18 Identities=17% Similarity=0.134 Sum_probs=15.4
Q ss_pred cCCCeEEEcCCCCchhHH
Q psy7268 75 SGKSAILVAETGCGKTLS 92 (134)
Q Consensus 75 ~g~dvli~a~tGsGKT~~ 92 (134)
.|..+++.|+.|+|||..
T Consensus 30 ~~~~v~i~G~~G~GKT~L 47 (350)
T 2qen_A 30 NYPLTLLLGIRRVGKSSL 47 (350)
T ss_dssp HCSEEEEECCTTSSHHHH
T ss_pred cCCeEEEECCCcCCHHHH
Confidence 367899999999999965
No 408
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=75.44 E-value=1.5 Score=32.36 Aligned_cols=15 Identities=20% Similarity=0.443 Sum_probs=12.8
Q ss_pred eEEEcCCCCchhHHh
Q psy7268 79 AILVAETGCGKTLSF 93 (134)
Q Consensus 79 vli~a~tGsGKT~~~ 93 (134)
+.|.|++|+|||...
T Consensus 34 i~I~G~sGsGKSTla 48 (290)
T 1odf_A 34 IFFSGPQGSGKSFTS 48 (290)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 678899999999764
No 409
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=75.33 E-value=1.3 Score=33.36 Aligned_cols=18 Identities=28% Similarity=0.366 Sum_probs=14.5
Q ss_pred CCCeEEEcCCCCchhHHh
Q psy7268 76 GKSAILVAETGCGKTLSF 93 (134)
Q Consensus 76 g~dvli~a~tGsGKT~~~ 93 (134)
|.-+.+.||+|+|||...
T Consensus 129 g~vi~lvG~nGaGKTTll 146 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTI 146 (328)
T ss_dssp SEEEEEECCTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 445788999999999754
No 410
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=75.29 E-value=1.4 Score=30.93 Aligned_cols=17 Identities=24% Similarity=0.335 Sum_probs=13.9
Q ss_pred CCCeEEEcCCCCchhHH
Q psy7268 76 GKSAILVAETGCGKTLS 92 (134)
Q Consensus 76 g~dvli~a~tGsGKT~~ 92 (134)
|.-+.+.|+.|+|||..
T Consensus 20 g~~i~i~G~~GsGKSTl 36 (230)
T 2vp4_A 20 PFTVLIEGNIGSGKTTY 36 (230)
T ss_dssp CEEEEEECSTTSCHHHH
T ss_pred ceEEEEECCCCCCHHHH
Confidence 44578899999999964
No 411
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=75.25 E-value=3.7 Score=37.62 Aligned_cols=27 Identities=19% Similarity=0.186 Sum_probs=20.1
Q ss_pred cCCCeEEEcCCCCchhHHhHHHHHHHH
Q psy7268 75 SGKSAILVAETGCGKTLSFLAPLVQQI 101 (134)
Q Consensus 75 ~g~dvli~a~tGsGKT~~~~lpil~~~ 101 (134)
.|..+++.+++|+|||...+--+...+
T Consensus 33 ~G~i~lI~G~pGsGKT~LAlqla~~~~ 59 (1706)
T 3cmw_A 33 MGRIVEIYGPESSGKTTLTLQVIAAAQ 59 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 367899999999999977654444444
No 412
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=75.11 E-value=3.6 Score=31.17 Aligned_cols=22 Identities=18% Similarity=-0.043 Sum_probs=16.3
Q ss_pred CeEEEcCCCCchhHHhHHHHHH
Q psy7268 78 SAILVAETGCGKTLSFLAPLVQ 99 (134)
Q Consensus 78 dvli~a~tGsGKT~~~~lpil~ 99 (134)
-+.+.+|+|+|||...+-.+..
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~ 51 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSS 51 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999765444333
No 413
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=74.85 E-value=1.3 Score=32.15 Aligned_cols=15 Identities=27% Similarity=0.545 Sum_probs=12.6
Q ss_pred CeEEEcCCCCchhHH
Q psy7268 78 SAILVAETGCGKTLS 92 (134)
Q Consensus 78 dvli~a~tGsGKT~~ 92 (134)
.+.+.||+|+|||..
T Consensus 4 ~v~lvG~nGaGKSTL 18 (270)
T 3sop_A 4 NIMVVGQSGLGKSTL 18 (270)
T ss_dssp EEEEEESSSSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 467899999999954
No 414
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=74.29 E-value=1.6 Score=36.89 Aligned_cols=25 Identities=36% Similarity=0.561 Sum_probs=17.9
Q ss_pred CCCeEEEcCCCCchhHHhHHHHHHHH
Q psy7268 76 GKSAILVAETGCGKTLSFLAPLVQQI 101 (134)
Q Consensus 76 g~dvli~a~tGsGKT~~~~lpil~~~ 101 (134)
.+++++.||+|+|||... -.+...+
T Consensus 191 ~~~vlL~G~pG~GKT~la-~~la~~l 215 (854)
T 1qvr_A 191 KNNPVLIGEPGVGKTAIV-EGLAQRI 215 (854)
T ss_dssp CCCCEEEECTTSCHHHHH-HHHHHHH
T ss_pred CCceEEEcCCCCCHHHHH-HHHHHHH
Confidence 347999999999999654 3344444
No 415
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=74.07 E-value=1.8 Score=33.03 Aligned_cols=19 Identities=32% Similarity=0.482 Sum_probs=15.9
Q ss_pred cCCCeEEEcCCCCchhHHh
Q psy7268 75 SGKSAILVAETGCGKTLSF 93 (134)
Q Consensus 75 ~g~dvli~a~tGsGKT~~~ 93 (134)
.|.-+.+.+|+|+|||...
T Consensus 40 ~Ge~~~llGpnGsGKSTLL 58 (355)
T 1z47_A 40 EGEMVGLLGPSGSGKTTIL 58 (355)
T ss_dssp TTCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCcHHHHH
Confidence 5777889999999999653
No 416
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=74.05 E-value=1.7 Score=33.24 Aligned_cols=18 Identities=33% Similarity=0.761 Sum_probs=15.1
Q ss_pred cCCCeEEEcCCCCchhHH
Q psy7268 75 SGKSAILVAETGCGKTLS 92 (134)
Q Consensus 75 ~g~dvli~a~tGsGKT~~ 92 (134)
.|.-+.+.||+|+|||..
T Consensus 29 ~Ge~~~llGpsGsGKSTL 46 (359)
T 3fvq_A 29 PGEILFIIGASGCGKTTL 46 (359)
T ss_dssp TTCEEEEEESTTSSHHHH
T ss_pred CCCEEEEECCCCchHHHH
Confidence 466788999999999964
No 417
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=73.93 E-value=10 Score=26.37 Aligned_cols=60 Identities=18% Similarity=0.157 Sum_probs=44.0
Q ss_pred ChHHHHHHHHHHHcCC--CeEEEcCCCCchhHHhHHHHHHHHHhhcCCCCCCCCCCCcEEEEEcCcHHHHHHh
Q psy7268 62 PTEIQKYSIPTLLSGK--SAILVAETGCGKTLSFLAPLVQQILTWKSRPEYKPELNAPLALIITPGRELVFQI 132 (134)
Q Consensus 62 ~t~iQ~~~i~~~~~g~--dvli~a~tGsGKT~~~~lpil~~~~~~~~~~~~~~~~~~~~~lil~Pt~~La~Qi 132 (134)
.++-|..++..++..+ -.++.+.-|++|+-..+-.++..-.. .|.++.+++|+..-...+
T Consensus 35 ~~~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L~~~a~~-----------~Gr~V~vLAp~~~s~~~l 96 (189)
T 2l8b_A 35 RTAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMARE-----------QGREVQIIAADRRSQMNM 96 (189)
T ss_dssp CHHHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHHHHHHHHH-----------TTCCEEEECSTTHHHHHH
T ss_pred cCccchhHHHHHhccCCceEEEecccchHHHHHHHHHHHHHHHh-----------cCeEEEEEcCchHHHHHH
Confidence 4567999998887544 36678999999998875555554433 677899999998766554
No 418
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=73.93 E-value=1.4 Score=29.74 Aligned_cols=18 Identities=17% Similarity=0.394 Sum_probs=15.0
Q ss_pred cCCCeEEEcCCCCchhHH
Q psy7268 75 SGKSAILVAETGCGKTLS 92 (134)
Q Consensus 75 ~g~dvli~a~tGsGKT~~ 92 (134)
.|..+.+.|++|+|||..
T Consensus 25 ~~~~v~lvG~~g~GKSTL 42 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSA 42 (210)
T ss_dssp CSEEEEEEECTTSSHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 455689999999999954
No 419
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=73.82 E-value=2.2 Score=32.37 Aligned_cols=21 Identities=24% Similarity=0.232 Sum_probs=16.5
Q ss_pred cCCCeEEEcCCCCchhHHhHH
Q psy7268 75 SGKSAILVAETGCGKTLSFLA 95 (134)
Q Consensus 75 ~g~dvli~a~tGsGKT~~~~l 95 (134)
.|.-+++.+|+|+|||...+.
T Consensus 122 ~gsviLI~GpPGsGKTtLAlq 142 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVHA 142 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHH
Confidence 455679999999999976543
No 420
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=73.77 E-value=2.8 Score=32.68 Aligned_cols=16 Identities=38% Similarity=0.482 Sum_probs=13.8
Q ss_pred CeEEEcCCCCchhHHh
Q psy7268 78 SAILVAETGCGKTLSF 93 (134)
Q Consensus 78 dvli~a~tGsGKT~~~ 93 (134)
.+++.+++|+|||...
T Consensus 101 vI~ivG~~GvGKTTla 116 (432)
T 2v3c_C 101 VILLVGIQGSGKTTTA 116 (432)
T ss_dssp CEEEECCSSSSTTHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5888999999999765
No 421
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=73.66 E-value=1.8 Score=32.97 Aligned_cols=19 Identities=37% Similarity=0.784 Sum_probs=15.6
Q ss_pred cCCCeEEEcCCCCchhHHh
Q psy7268 75 SGKSAILVAETGCGKTLSF 93 (134)
Q Consensus 75 ~g~dvli~a~tGsGKT~~~ 93 (134)
.|.-+.+.||+|+|||...
T Consensus 28 ~Ge~~~llGpnGsGKSTLL 46 (359)
T 2yyz_A 28 DGEFVALLGPSGCGKTTTL 46 (359)
T ss_dssp TTCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEEcCCCchHHHHH
Confidence 4667889999999999653
No 422
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=73.54 E-value=2 Score=30.10 Aligned_cols=19 Identities=11% Similarity=0.058 Sum_probs=15.5
Q ss_pred cCCCeEEEcCCCCchhHHh
Q psy7268 75 SGKSAILVAETGCGKTLSF 93 (134)
Q Consensus 75 ~g~dvli~a~tGsGKT~~~ 93 (134)
.+.-+.+.++.|+|||...
T Consensus 15 ~~~~i~i~G~~gsGKst~~ 33 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVA 33 (236)
T ss_dssp CCCEEEEECSSCSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3556889999999999764
No 423
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=73.50 E-value=1.8 Score=29.16 Aligned_cols=16 Identities=13% Similarity=0.119 Sum_probs=13.3
Q ss_pred CeEEEcCCCCchhHHh
Q psy7268 78 SAILVAETGCGKTLSF 93 (134)
Q Consensus 78 dvli~a~tGsGKT~~~ 93 (134)
-+.+.++.|||||...
T Consensus 4 ~i~i~G~~GsGKst~~ 19 (208)
T 3ake_A 4 IVTIDGPSASGKSSVA 19 (208)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678899999999764
No 424
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=73.30 E-value=1.4 Score=31.07 Aligned_cols=19 Identities=21% Similarity=0.214 Sum_probs=15.6
Q ss_pred cCCCeEEEcCCCCchhHHh
Q psy7268 75 SGKSAILVAETGCGKTLSF 93 (134)
Q Consensus 75 ~g~dvli~a~tGsGKT~~~ 93 (134)
.|.-+++.|+.|+|||...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~ 43 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVI 43 (229)
T ss_dssp CCEEEEEECCTTSCHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHH
Confidence 4667889999999999653
No 425
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=73.28 E-value=1.9 Score=32.95 Aligned_cols=19 Identities=26% Similarity=0.490 Sum_probs=15.6
Q ss_pred cCCCeEEEcCCCCchhHHh
Q psy7268 75 SGKSAILVAETGCGKTLSF 93 (134)
Q Consensus 75 ~g~dvli~a~tGsGKT~~~ 93 (134)
.|.-+.+.||+|+|||...
T Consensus 28 ~Ge~~~llGpnGsGKSTLL 46 (362)
T 2it1_A 28 DGEFMALLGPSGSGKSTLL 46 (362)
T ss_dssp TTCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCchHHHHH
Confidence 4667889999999999653
No 426
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=73.07 E-value=9.2 Score=33.48 Aligned_cols=55 Identities=18% Similarity=0.285 Sum_probs=33.5
Q ss_pred CeEEEcCCCCchhHHhHHHHHHHHHhhcCCCCCCCCCCCcEEEEEcCcHHHHHHh
Q psy7268 78 SAILVAETGCGKTLSFLAPLVQQILTWKSRPEYKPELNAPLALIITPGRELVFQI 132 (134)
Q Consensus 78 dvli~a~tGsGKT~~~~lpil~~~~~~~~~~~~~~~~~~~~~lil~Pt~~La~Qi 132 (134)
..+|.|.-|||||.+..-=++..+..............-.+.|+|+=|+.=|..+
T Consensus 18 ~~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EM 72 (1180)
T 1w36_B 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAEL 72 (1180)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHH
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHH
Confidence 3489999999999888777777775321000000111224688888887655543
No 427
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=73.04 E-value=1.9 Score=30.61 Aligned_cols=16 Identities=19% Similarity=0.077 Sum_probs=13.5
Q ss_pred CeEEEcCCCCchhHHh
Q psy7268 78 SAILVAETGCGKTLSF 93 (134)
Q Consensus 78 dvli~a~tGsGKT~~~ 93 (134)
-+.+.|+.|||||...
T Consensus 24 iI~I~G~~GSGKST~a 39 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVC 39 (252)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3778999999999764
No 428
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=73.03 E-value=1.8 Score=33.37 Aligned_cols=19 Identities=32% Similarity=0.522 Sum_probs=16.3
Q ss_pred cCCCeEEEcCCCCchhHHh
Q psy7268 75 SGKSAILVAETGCGKTLSF 93 (134)
Q Consensus 75 ~g~dvli~a~tGsGKT~~~ 93 (134)
.|.-+.+.+|+|+|||...
T Consensus 46 ~Ge~~~llGpsGsGKSTLL 64 (390)
T 3gd7_A 46 PGQRVGLLGRTGSGKSTLL 64 (390)
T ss_dssp TTCEEEEEESTTSSHHHHH
T ss_pred CCCEEEEECCCCChHHHHH
Confidence 5778999999999999654
No 429
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=72.86 E-value=1.8 Score=33.44 Aligned_cols=16 Identities=25% Similarity=0.343 Sum_probs=13.5
Q ss_pred CeEEEcCCCCchhHHh
Q psy7268 78 SAILVAETGCGKTLSF 93 (134)
Q Consensus 78 dvli~a~tGsGKT~~~ 93 (134)
=++++|++|||||...
T Consensus 260 lIil~G~pGSGKSTla 275 (416)
T 3zvl_A 260 VVVAVGFPGAGKSTFI 275 (416)
T ss_dssp EEEEESCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3788999999999764
No 430
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=72.83 E-value=4.9 Score=31.30 Aligned_cols=16 Identities=31% Similarity=0.478 Sum_probs=13.3
Q ss_pred CeEEEcCCCCchhHHh
Q psy7268 78 SAILVAETGCGKTLSF 93 (134)
Q Consensus 78 dvli~a~tGsGKT~~~ 93 (134)
-+++.+++|+|||...
T Consensus 102 vI~ivG~~GvGKTT~a 117 (433)
T 2xxa_A 102 VVLMAGLQGAGKTTSV 117 (433)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4777899999999765
No 431
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=72.75 E-value=2 Score=32.91 Aligned_cols=19 Identities=42% Similarity=0.854 Sum_probs=15.7
Q ss_pred cCCCeEEEcCCCCchhHHh
Q psy7268 75 SGKSAILVAETGCGKTLSF 93 (134)
Q Consensus 75 ~g~dvli~a~tGsGKT~~~ 93 (134)
.|.-+.+.+|+|+|||...
T Consensus 28 ~Ge~~~llGpnGsGKSTLL 46 (372)
T 1g29_1 28 DGEFMILLGPSGCGKTTTL 46 (372)
T ss_dssp TTCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCcHHHHHH
Confidence 5677889999999999653
No 432
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=72.34 E-value=2.2 Score=33.62 Aligned_cols=20 Identities=25% Similarity=0.375 Sum_probs=17.2
Q ss_pred HcCCCeEEEcCCCCchhHHh
Q psy7268 74 LSGKSAILVAETGCGKTLSF 93 (134)
Q Consensus 74 ~~g~dvli~a~tGsGKT~~~ 93 (134)
..|.-+.+.||+|+|||...
T Consensus 136 ~~Ge~v~IvGpnGsGKSTLl 155 (460)
T 2npi_A 136 FEGPRVVIVGGSQTGKTSLS 155 (460)
T ss_dssp SSCCCEEEEESTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 37888999999999999653
No 433
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=72.25 E-value=1.6 Score=32.14 Aligned_cols=18 Identities=11% Similarity=0.099 Sum_probs=14.0
Q ss_pred CCCeEEEcCCCCchhHHh
Q psy7268 76 GKSAILVAETGCGKTLSF 93 (134)
Q Consensus 76 g~dvli~a~tGsGKT~~~ 93 (134)
|.-+-+.|++|+|||...
T Consensus 80 g~iigI~G~~GsGKSTl~ 97 (308)
T 1sq5_A 80 PYIISIAGSVAVGKSTTA 97 (308)
T ss_dssp CEEEEEEECTTSSHHHHH
T ss_pred CEEEEEECCCCCCHHHHH
Confidence 334778899999999654
No 434
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=72.23 E-value=3.6 Score=30.79 Aligned_cols=22 Identities=14% Similarity=0.279 Sum_probs=15.6
Q ss_pred eEEEcCCCCchhHHhHHHHHHHHH
Q psy7268 79 AILVAETGCGKTLSFLAPLVQQIL 102 (134)
Q Consensus 79 vli~a~tGsGKT~~~~lpil~~~~ 102 (134)
+-+.||+|+|||... -.+..+.
T Consensus 95 igI~GpsGSGKSTl~--~~L~~ll 116 (321)
T 3tqc_A 95 IGIAGSVAVGKSTTS--RVLKALL 116 (321)
T ss_dssp EEEECCTTSSHHHHH--HHHHHHH
T ss_pred EEEECCCCCCHHHHH--HHHHHHh
Confidence 677899999999664 3344443
No 435
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=72.17 E-value=2.5 Score=31.10 Aligned_cols=20 Identities=20% Similarity=0.162 Sum_probs=15.7
Q ss_pred CCCeEEEcCCCCchhHHhHH
Q psy7268 76 GKSAILVAETGCGKTLSFLA 95 (134)
Q Consensus 76 g~dvli~a~tGsGKT~~~~l 95 (134)
|.-+++.|++|+|||...+-
T Consensus 98 g~i~~i~G~~gsGKT~la~~ 117 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQ 117 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 34589999999999976543
No 436
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=72.08 E-value=2 Score=34.59 Aligned_cols=19 Identities=26% Similarity=0.485 Sum_probs=16.1
Q ss_pred cCCCeEEEcCCCCchhHHh
Q psy7268 75 SGKSAILVAETGCGKTLSF 93 (134)
Q Consensus 75 ~g~dvli~a~tGsGKT~~~ 93 (134)
.|+-+.+.||+|+|||...
T Consensus 366 ~G~~~~ivG~sGsGKSTll 384 (578)
T 4a82_A 366 KGETVAFVGMSGGGKSTLI 384 (578)
T ss_dssp TTCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCChHHHHH
Confidence 5778999999999999653
No 437
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=71.96 E-value=2.1 Score=32.99 Aligned_cols=18 Identities=33% Similarity=0.765 Sum_probs=15.2
Q ss_pred cCCCeEEEcCCCCchhHH
Q psy7268 75 SGKSAILVAETGCGKTLS 92 (134)
Q Consensus 75 ~g~dvli~a~tGsGKT~~ 92 (134)
.|.-+.+.+|+|+|||..
T Consensus 28 ~Ge~~~llGpsGsGKSTL 45 (381)
T 3rlf_A 28 EGEFVVFVGPSGCGKSTL 45 (381)
T ss_dssp TTCEEEEECCTTSSHHHH
T ss_pred CCCEEEEEcCCCchHHHH
Confidence 566788999999999964
No 438
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=71.91 E-value=2.1 Score=32.80 Aligned_cols=19 Identities=37% Similarity=0.830 Sum_probs=15.7
Q ss_pred cCCCeEEEcCCCCchhHHh
Q psy7268 75 SGKSAILVAETGCGKTLSF 93 (134)
Q Consensus 75 ~g~dvli~a~tGsGKT~~~ 93 (134)
.|.-+.+.+|+|+|||...
T Consensus 36 ~Ge~~~llGpnGsGKSTLL 54 (372)
T 1v43_A 36 DGEFLVLLGPSGCGKTTTL 54 (372)
T ss_dssp TTCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCChHHHHH
Confidence 5677889999999999643
No 439
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=71.90 E-value=1.2 Score=37.58 Aligned_cols=54 Identities=24% Similarity=0.397 Sum_probs=30.6
Q ss_pred CCCCcccCCCCHHHHHHHHHC-CC--CCChHHHHHHHHHHHcCCCeEEEcCCCCchhHHh
Q psy7268 37 DLGTFEDTGLAPEIIDIFTKR-GL--TTPTEIQKYSIPTLLSGKSAILVAETGCGKTLSF 93 (134)
Q Consensus 37 ~~~~f~~~~l~~~i~~~l~~~-g~--~~~t~iQ~~~i~~~~~g~dvli~a~tGsGKT~~~ 93 (134)
+-.+|+++.-.+.+.+.|.+. .+ .++...... .+..++.+++.||+|+|||...
T Consensus 472 ~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~---~~~~~~~vLL~GppGtGKT~La 528 (806)
T 1ypw_A 472 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKF---GMTPSKGVLFYGPPGCGKTLLA 528 (806)
T ss_dssp CCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCC---CCCCCCCCCCBCCTTSSHHHHH
T ss_pred ccccccccccchhhhhhHHHHHHhhhhchHHHHhc---CCCCCceeEEECCCCCCHHHHH
Confidence 334667766666666666653 11 111100000 1124677999999999999754
No 440
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=71.90 E-value=1.9 Score=31.35 Aligned_cols=16 Identities=25% Similarity=0.194 Sum_probs=13.6
Q ss_pred CeEEEcCCCCchhHHh
Q psy7268 78 SAILVAETGCGKTLSF 93 (134)
Q Consensus 78 dvli~a~tGsGKT~~~ 93 (134)
-+.+.|+.|||||...
T Consensus 77 iI~I~G~~GSGKSTva 92 (281)
T 2f6r_A 77 VLGLTGISGSGKSSVA 92 (281)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788999999999764
No 441
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=71.76 E-value=1.7 Score=33.04 Aligned_cols=19 Identities=42% Similarity=0.677 Sum_probs=15.7
Q ss_pred cCCCeEEEcCCCCchhHHh
Q psy7268 75 SGKSAILVAETGCGKTLSF 93 (134)
Q Consensus 75 ~g~dvli~a~tGsGKT~~~ 93 (134)
.|.-+.+.||+|+|||...
T Consensus 25 ~Ge~~~llGpnGsGKSTLL 43 (348)
T 3d31_A 25 SGEYFVILGPTGAGKTLFL 43 (348)
T ss_dssp TTCEEEEECCCTHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHH
Confidence 5667889999999999653
No 442
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=71.70 E-value=4.4 Score=29.48 Aligned_cols=38 Identities=11% Similarity=0.066 Sum_probs=22.7
Q ss_pred cCCCeEEEcCCCCchhHHhHHHHHHHHHhhcCCCCCCCCCCCcEEEEEcC
Q psy7268 75 SGKSAILVAETGCGKTLSFLAPLVQQILTWKSRPEYKPELNAPLALIITP 124 (134)
Q Consensus 75 ~g~dvli~a~tGsGKT~~~~lpil~~~~~~~~~~~~~~~~~~~~~lil~P 124 (134)
.|..+++.+.+|+||| .+.+-.+..-.+ ++-++++++-
T Consensus 20 ~gs~~li~g~p~~~~~-~l~~qfl~~g~~-----------~Ge~~~~~~~ 57 (260)
T 3bs4_A 20 HSLILIHEEDASSRGK-DILFYILSRKLK-----------SDNLVGMFSI 57 (260)
T ss_dssp TCEEEEEECSGGGCHH-HHHHHHHHHHHH-----------TTCEEEEEEC
T ss_pred CCcEEEEEeCCCccHH-HHHHHHHHHHHH-----------CCCcEEEEEE
Confidence 4556788877788777 443333333323 4567887763
No 443
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=71.49 E-value=2.1 Score=30.59 Aligned_cols=18 Identities=17% Similarity=0.143 Sum_probs=14.7
Q ss_pred CCCeEEEcCCCCchhHHh
Q psy7268 76 GKSAILVAETGCGKTLSF 93 (134)
Q Consensus 76 g~dvli~a~tGsGKT~~~ 93 (134)
..-+.+.+|+|+|||...
T Consensus 9 ~~~i~i~G~~GsGKsTla 26 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVS 26 (233)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 345888999999999764
No 444
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=71.42 E-value=2.7 Score=31.48 Aligned_cols=18 Identities=22% Similarity=-0.018 Sum_probs=14.6
Q ss_pred CCeEEEcCCCCchhHHhH
Q psy7268 77 KSAILVAETGCGKTLSFL 94 (134)
Q Consensus 77 ~dvli~a~tGsGKT~~~~ 94 (134)
.-+++.|++|+|||...+
T Consensus 123 ~i~~I~G~~GsGKTtla~ 140 (343)
T 1v5w_A 123 AITEAFGEFRTGKTQLSH 140 (343)
T ss_dssp EEEEEECCTTCTHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 347899999999997654
No 445
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=71.35 E-value=2.5 Score=31.66 Aligned_cols=17 Identities=29% Similarity=0.366 Sum_probs=14.0
Q ss_pred CCeEE--EcCCCCchhHHh
Q psy7268 77 KSAIL--VAETGCGKTLSF 93 (134)
Q Consensus 77 ~dvli--~a~tGsGKT~~~ 93 (134)
..+++ .|+.|+|||...
T Consensus 51 ~~~li~i~G~~G~GKT~L~ 69 (412)
T 1w5s_A 51 VNMIYGSIGRVGIGKTTLA 69 (412)
T ss_dssp EEEEEECTTCCSSSHHHHH
T ss_pred CEEEEeCcCcCCCCHHHHH
Confidence 45888 899999999664
No 446
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=71.32 E-value=1.8 Score=34.73 Aligned_cols=16 Identities=31% Similarity=0.551 Sum_probs=13.6
Q ss_pred CeEEEcCCCCchhHHh
Q psy7268 78 SAILVAETGCGKTLSF 93 (134)
Q Consensus 78 dvli~a~tGsGKT~~~ 93 (134)
-+.+.|++|+|||...
T Consensus 295 VI~LVGpNGSGKTTLl 310 (503)
T 2yhs_A 295 VILMVGVNGVGKTTTI 310 (503)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCcccHHHHH
Confidence 4788999999999764
No 447
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=71.16 E-value=4.7 Score=33.40 Aligned_cols=55 Identities=20% Similarity=0.218 Sum_probs=37.3
Q ss_pred CChHHHHHHHHHHHcC--CCeEEEcCCCCchhHHhHHHHHHHHHhhcCCCCCCCCCCCcEEEEEcCcHHHHH
Q psy7268 61 TPTEIQKYSIPTLLSG--KSAILVAETGCGKTLSFLAPLVQQILTWKSRPEYKPELNAPLALIITPGRELVF 130 (134)
Q Consensus 61 ~~t~iQ~~~i~~~~~g--~dvli~a~tGsGKT~~~~lpil~~~~~~~~~~~~~~~~~~~~~lil~Pt~~La~ 130 (134)
.+|.-|.+++..+..- .-.++.|+-|.|||.+.-+.+-. + . ..++|.+|+.+-+.
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a~-~-~-------------~~~~vtAP~~~a~~ 231 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLISR-I-A-------------GRAIVTAPAKASTD 231 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHHH-S-S-------------SCEEEECSSCCSCH
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHHH-H-H-------------hCcEEECCCHHHHH
Confidence 6789999999887752 23688899999999554333322 2 1 12588888876444
No 448
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=71.02 E-value=2.2 Score=29.41 Aligned_cols=16 Identities=19% Similarity=0.229 Sum_probs=13.2
Q ss_pred CeEEEcCCCCchhHHh
Q psy7268 78 SAILVAETGCGKTLSF 93 (134)
Q Consensus 78 dvli~a~tGsGKT~~~ 93 (134)
-+.+.|+.|||||.+.
T Consensus 14 iIgltG~~GSGKSTva 29 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVC 29 (192)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3678899999999764
No 449
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=71.01 E-value=2.3 Score=28.61 Aligned_cols=15 Identities=27% Similarity=0.620 Sum_probs=12.6
Q ss_pred CeEEEcCCCCchhHH
Q psy7268 78 SAILVAETGCGKTLS 92 (134)
Q Consensus 78 dvli~a~tGsGKT~~ 92 (134)
.+.+.|++|+|||..
T Consensus 7 kv~lvG~~g~GKSTL 21 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNL 21 (199)
T ss_dssp EEEEESSTTSSHHHH
T ss_pred EEEEECcCCCCHHHH
Confidence 378899999999943
No 450
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=70.65 E-value=1.8 Score=31.97 Aligned_cols=16 Identities=25% Similarity=0.412 Sum_probs=13.4
Q ss_pred CeEEEcCCCCchhHHh
Q psy7268 78 SAILVAETGCGKTLSF 93 (134)
Q Consensus 78 dvli~a~tGsGKT~~~ 93 (134)
-.++.|++|+|||...
T Consensus 26 ~~~i~G~NGsGKS~ll 41 (322)
T 1e69_A 26 VTAIVGPNGSGKSNII 41 (322)
T ss_dssp EEEEECCTTTCSTHHH
T ss_pred cEEEECCCCCcHHHHH
Confidence 4678999999999764
No 451
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=70.33 E-value=2.3 Score=34.27 Aligned_cols=19 Identities=37% Similarity=0.583 Sum_probs=16.4
Q ss_pred cCCCeEEEcCCCCchhHHh
Q psy7268 75 SGKSAILVAETGCGKTLSF 93 (134)
Q Consensus 75 ~g~dvli~a~tGsGKT~~~ 93 (134)
.|+-+.+.||+|+|||...
T Consensus 368 ~G~~~~ivG~sGsGKSTll 386 (582)
T 3b5x_A 368 QGKTVALVGRSGSGKSTIA 386 (582)
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 6888999999999999654
No 452
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=70.31 E-value=2.8 Score=31.53 Aligned_cols=19 Identities=26% Similarity=0.198 Sum_probs=15.1
Q ss_pred CCeEEEcCCCCchhHHhHH
Q psy7268 77 KSAILVAETGCGKTLSFLA 95 (134)
Q Consensus 77 ~dvli~a~tGsGKT~~~~l 95 (134)
.-+.+.+|+|+|||.....
T Consensus 132 ~i~~I~G~~GsGKTTL~~~ 150 (349)
T 1pzn_A 132 AITEVFGEFGSGKTQLAHT 150 (349)
T ss_dssp EEEEEEESTTSSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4578999999999976543
No 453
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=70.20 E-value=2.1 Score=29.63 Aligned_cols=19 Identities=16% Similarity=0.207 Sum_probs=16.0
Q ss_pred cCCCeEEEcCCCCchhHHh
Q psy7268 75 SGKSAILVAETGCGKTLSF 93 (134)
Q Consensus 75 ~g~dvli~a~tGsGKT~~~ 93 (134)
.|+-+++.+++|+||+...
T Consensus 15 ~G~gvli~G~SGaGKStla 33 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELS 33 (181)
T ss_dssp TTEEEEEEESSSSSHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHH
Confidence 4677999999999999554
No 454
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=70.02 E-value=5.9 Score=29.00 Aligned_cols=18 Identities=33% Similarity=0.318 Sum_probs=13.7
Q ss_pred CCCeEEEcCCCCchhHHh
Q psy7268 76 GKSAILVAETGCGKTLSF 93 (134)
Q Consensus 76 g~dvli~a~tGsGKT~~~ 93 (134)
|+-+.+.+++|+|||...
T Consensus 98 ~~~i~i~g~~G~GKTT~~ 115 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTA 115 (295)
T ss_dssp SEEEEEECCTTTTHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 344677899999999654
No 455
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=69.78 E-value=2.3 Score=34.26 Aligned_cols=19 Identities=37% Similarity=0.599 Sum_probs=16.2
Q ss_pred cCCCeEEEcCCCCchhHHh
Q psy7268 75 SGKSAILVAETGCGKTLSF 93 (134)
Q Consensus 75 ~g~dvli~a~tGsGKT~~~ 93 (134)
.|+-+.+.||+|+|||...
T Consensus 368 ~G~~~~ivG~sGsGKSTLl 386 (582)
T 3b60_A 368 AGKTVALVGRSGSGKSTIA 386 (582)
T ss_dssp TTCEEEEEECTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5778999999999999654
No 456
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=69.56 E-value=5.4 Score=29.36 Aligned_cols=16 Identities=38% Similarity=0.480 Sum_probs=13.0
Q ss_pred CeEEEcCCCCchhHHh
Q psy7268 78 SAILVAETGCGKTLSF 93 (134)
Q Consensus 78 dvli~a~tGsGKT~~~ 93 (134)
-+++.+++|+|||...
T Consensus 100 vi~i~G~~G~GKTT~~ 115 (297)
T 1j8m_F 100 VIMLVGVQGTGKTTTA 115 (297)
T ss_dssp EEEEECSSCSSTTHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3667899999999764
No 457
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=69.45 E-value=6.6 Score=29.40 Aligned_cols=16 Identities=19% Similarity=0.326 Sum_probs=13.5
Q ss_pred CeEEEcCCCCchhHHh
Q psy7268 78 SAILVAETGCGKTLSF 93 (134)
Q Consensus 78 dvli~a~tGsGKT~~~ 93 (134)
.+.+.|++|+|||...
T Consensus 81 ~I~i~G~~G~GKSTl~ 96 (355)
T 3p32_A 81 RVGITGVPGVGKSTAI 96 (355)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4888999999999654
No 458
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=69.36 E-value=2.4 Score=28.40 Aligned_cols=15 Identities=27% Similarity=0.620 Sum_probs=12.7
Q ss_pred CeEEEcCCCCchhHH
Q psy7268 78 SAILVAETGCGKTLS 92 (134)
Q Consensus 78 dvli~a~tGsGKT~~ 92 (134)
.+.+.|++|+|||..
T Consensus 31 kv~lvG~~g~GKSTL 45 (191)
T 1oix_A 31 KVVLIGDSGVGKSNL 45 (191)
T ss_dssp EEEEEECTTSSHHHH
T ss_pred EEEEECcCCCCHHHH
Confidence 378999999999954
No 459
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=69.31 E-value=3.1 Score=28.46 Aligned_cols=18 Identities=17% Similarity=0.119 Sum_probs=15.0
Q ss_pred CCCeEEEcCCCCchhHHh
Q psy7268 76 GKSAILVAETGCGKTLSF 93 (134)
Q Consensus 76 g~dvli~a~tGsGKT~~~ 93 (134)
+.-+.+.++.|+|||...
T Consensus 3 ~~~i~i~G~~gsGkst~~ 20 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIA 20 (219)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 346889999999999874
No 460
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=68.93 E-value=2.7 Score=32.22 Aligned_cols=18 Identities=22% Similarity=0.420 Sum_probs=15.3
Q ss_pred cCCCeEEEcCCCCchhHH
Q psy7268 75 SGKSAILVAETGCGKTLS 92 (134)
Q Consensus 75 ~g~dvli~a~tGsGKT~~ 92 (134)
.|.-+.+.||+|+|||..
T Consensus 53 ~Gei~~IiGpnGaGKSTL 70 (366)
T 3tui_C 53 AGQIYGVIGASGAGKSTL 70 (366)
T ss_dssp TTCEEEEECCTTSSHHHH
T ss_pred CCCEEEEEcCCCchHHHH
Confidence 567788999999999964
No 461
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=68.82 E-value=1.6 Score=33.18 Aligned_cols=19 Identities=26% Similarity=0.434 Sum_probs=15.7
Q ss_pred cCCCeEEEcCCCCchhHHh
Q psy7268 75 SGKSAILVAETGCGKTLSF 93 (134)
Q Consensus 75 ~g~dvli~a~tGsGKT~~~ 93 (134)
.|.-+.+.||+|+|||...
T Consensus 30 ~Ge~~~llGpnGsGKSTLL 48 (353)
T 1oxx_K 30 NGERFGILGPSGAGKTTFM 48 (353)
T ss_dssp TTCEEEEECSCHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHH
Confidence 5677889999999999654
No 462
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=68.77 E-value=15 Score=27.37 Aligned_cols=48 Identities=17% Similarity=0.232 Sum_probs=30.7
Q ss_pred CCHHHHHHHHHCCCC-----CChHHHHHHHH-HHHc----------------CCCeEEEcCCCCchhHHh
Q psy7268 46 LAPEIIDIFTKRGLT-----TPTEIQKYSIP-TLLS----------------GKSAILVAETGCGKTLSF 93 (134)
Q Consensus 46 l~~~i~~~l~~~g~~-----~~t~iQ~~~i~-~~~~----------------g~dvli~a~tGsGKT~~~ 93 (134)
.++++++..++.|+. ..+.--...+. .+.. |+-+++.|++|+||+...
T Consensus 92 ~peelie~A~~~~IPVL~T~~~ts~~~~~l~~~l~~~~~~~~~~H~~~v~~~g~~vl~~G~sG~GKSt~a 161 (314)
T 1ko7_A 92 PPEELIEAAKEHETPLITSKIATTQLMSRLTTFLEHELARTTSLHGVLVDVYGVGVLITGDSGIGKSETA 161 (314)
T ss_dssp CCHHHHHHHHHTTCCEEECCSCHHHHHHHHHHHHHHHTCEEEEEESEEEEETTEEEEEEESTTSSHHHHH
T ss_pred CCHHHHHHHHHCCCeEEEECCchhHHHHHHHHHHHHhhccceeeeEEEEEECCEEEEEEeCCCCCHHHHH
Confidence 478888888887764 22222222222 2222 778999999999996443
No 463
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=68.67 E-value=2.5 Score=32.14 Aligned_cols=17 Identities=29% Similarity=0.294 Sum_probs=14.0
Q ss_pred CeEEEcCCCCchhHHhH
Q psy7268 78 SAILVAETGCGKTLSFL 94 (134)
Q Consensus 78 dvli~a~tGsGKT~~~~ 94 (134)
-..+.||+|+|||...-
T Consensus 28 ~~~i~G~nG~GKttll~ 44 (359)
T 2o5v_A 28 VTGIYGENGAGKTNLLE 44 (359)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred eEEEECCCCCChhHHHH
Confidence 46789999999997743
No 464
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=68.63 E-value=2.8 Score=26.60 Aligned_cols=14 Identities=21% Similarity=0.480 Sum_probs=12.2
Q ss_pred CeEEEcCCCCchhH
Q psy7268 78 SAILVAETGCGKTL 91 (134)
Q Consensus 78 dvli~a~tGsGKT~ 91 (134)
.+++.|++|+|||.
T Consensus 3 ki~v~G~~~~GKSs 16 (161)
T 2dyk_A 3 KVVIVGRPNVGKSS 16 (161)
T ss_dssp EEEEECCTTSSHHH
T ss_pred EEEEECCCCCCHHH
Confidence 47899999999994
No 465
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=68.49 E-value=2.5 Score=29.64 Aligned_cols=19 Identities=26% Similarity=0.323 Sum_probs=16.0
Q ss_pred cCCCeEEEcCCCCchhHHh
Q psy7268 75 SGKSAILVAETGCGKTLSF 93 (134)
Q Consensus 75 ~g~dvli~a~tGsGKT~~~ 93 (134)
.|.-+++.|+.|+|||...
T Consensus 2 ~g~~i~~eG~~gsGKsT~~ 20 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTAR 20 (213)
T ss_dssp CCCEEEEEECTTSCHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 4677889999999999664
No 466
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=68.44 E-value=2.8 Score=27.75 Aligned_cols=16 Identities=31% Similarity=0.341 Sum_probs=13.5
Q ss_pred CCeEEEcCCCCchhHH
Q psy7268 77 KSAILVAETGCGKTLS 92 (134)
Q Consensus 77 ~dvli~a~tGsGKT~~ 92 (134)
..+++.|++|+|||..
T Consensus 49 ~~i~vvG~~g~GKSsl 64 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSL 64 (193)
T ss_dssp CEEEEECCTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 3689999999999943
No 467
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=68.43 E-value=2.4 Score=34.31 Aligned_cols=19 Identities=42% Similarity=0.594 Sum_probs=16.1
Q ss_pred cCCCeEEEcCCCCchhHHh
Q psy7268 75 SGKSAILVAETGCGKTLSF 93 (134)
Q Consensus 75 ~g~dvli~a~tGsGKT~~~ 93 (134)
.|+-+.+.||+|+|||...
T Consensus 380 ~G~~~~ivG~sGsGKSTll 398 (598)
T 3qf4_B 380 PGQKVALVGPTGSGKTTIV 398 (598)
T ss_dssp TTCEEEEECCTTSSTTHHH
T ss_pred CCCEEEEECCCCCcHHHHH
Confidence 5778999999999999653
No 468
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=68.40 E-value=2.6 Score=32.40 Aligned_cols=18 Identities=17% Similarity=0.350 Sum_probs=15.0
Q ss_pred CCCeEEEcCCCCchhHHh
Q psy7268 76 GKSAILVAETGCGKTLSF 93 (134)
Q Consensus 76 g~dvli~a~tGsGKT~~~ 93 (134)
+.-+++.||+|+|||..+
T Consensus 26 ~~~~~i~G~nG~GKstll 43 (430)
T 1w1w_A 26 SNFTSIIGPNGSGKSNMM 43 (430)
T ss_dssp CSEEEEECSTTSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 556789999999999764
No 469
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=67.98 E-value=2.7 Score=33.93 Aligned_cols=19 Identities=32% Similarity=0.539 Sum_probs=16.2
Q ss_pred cCCCeEEEcCCCCchhHHh
Q psy7268 75 SGKSAILVAETGCGKTLSF 93 (134)
Q Consensus 75 ~g~dvli~a~tGsGKT~~~ 93 (134)
.|+-+.+.||+|+|||...
T Consensus 368 ~Ge~~~ivG~sGsGKSTll 386 (587)
T 3qf4_A 368 PGSLVAVLGETGSGKSTLM 386 (587)
T ss_dssp TTCEEEEECSSSSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5778999999999999653
No 470
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=67.80 E-value=2.9 Score=28.36 Aligned_cols=16 Identities=31% Similarity=0.341 Sum_probs=13.5
Q ss_pred CCeEEEcCCCCchhHH
Q psy7268 77 KSAILVAETGCGKTLS 92 (134)
Q Consensus 77 ~dvli~a~tGsGKT~~ 92 (134)
..+++.|++|+|||..
T Consensus 13 ~~i~~~G~~g~GKTsl 28 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSL 28 (218)
T ss_dssp CEEEEECSTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 3589999999999944
No 471
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=67.69 E-value=4.1 Score=31.42 Aligned_cols=26 Identities=12% Similarity=0.271 Sum_probs=21.8
Q ss_pred CCCCCCcccCCCCHHHHHHHHHCCCC
Q psy7268 35 RIDLGTFEDTGLAPEIIDIFTKRGLT 60 (134)
Q Consensus 35 ~~~~~~f~~~~l~~~i~~~l~~~g~~ 60 (134)
..++..++..++++..++.|++.||.
T Consensus 80 ~~~~~~l~~~gi~~~~~~~L~~ag~~ 105 (400)
T 3lda_A 80 FVPIEKLQVNGITMADVKKLRESGLH 105 (400)
T ss_dssp SCBGGGGCCTTCCHHHHHHHHHTTCC
T ss_pred ccCHHHHHhCCCCHHHHHHHHHcCCC
Confidence 35667778888999999999999985
No 472
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=67.49 E-value=2.4 Score=34.17 Aligned_cols=19 Identities=37% Similarity=0.602 Sum_probs=16.2
Q ss_pred cCCCeEEEcCCCCchhHHh
Q psy7268 75 SGKSAILVAETGCGKTLSF 93 (134)
Q Consensus 75 ~g~dvli~a~tGsGKT~~~ 93 (134)
.|+-+.+.||+|+|||...
T Consensus 369 ~G~~~~ivG~sGsGKSTLl 387 (595)
T 2yl4_A 369 SGSVTALVGPSGSGKSTVL 387 (595)
T ss_dssp TTCEEEEECCTTSSSTHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5778999999999999654
No 473
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=67.43 E-value=7.2 Score=31.10 Aligned_cols=16 Identities=31% Similarity=0.463 Sum_probs=13.5
Q ss_pred CeEEEcCCCCchhHHh
Q psy7268 78 SAILVAETGCGKTLSF 93 (134)
Q Consensus 78 dvli~a~tGsGKT~~~ 93 (134)
.+++++++|+|||...
T Consensus 103 vI~ivG~~GvGKTTl~ 118 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTC 118 (504)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4778899999999765
No 474
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=67.22 E-value=3 Score=26.39 Aligned_cols=15 Identities=27% Similarity=0.472 Sum_probs=12.7
Q ss_pred CeEEEcCCCCchhHH
Q psy7268 78 SAILVAETGCGKTLS 92 (134)
Q Consensus 78 dvli~a~tGsGKT~~ 92 (134)
.+++.|++|+|||..
T Consensus 5 ~i~v~G~~~~GKssl 19 (166)
T 2ce2_X 5 KLVVVGAGGVGKSAL 19 (166)
T ss_dssp EEEEEESTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478999999999944
No 475
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=67.19 E-value=4.2 Score=31.01 Aligned_cols=22 Identities=27% Similarity=0.543 Sum_probs=18.0
Q ss_pred HHHHcCCCeEEEcCCCCchhHH
Q psy7268 71 PTLLSGKSAILVAETGCGKTLS 92 (134)
Q Consensus 71 ~~~~~g~dvli~a~tGsGKT~~ 92 (134)
.....|.-+.+.|++|+|||..
T Consensus 210 ~~~~~G~~~~lvG~sG~GKSTL 231 (358)
T 2rcn_A 210 EEALTGRISIFAGQSGVGKSSL 231 (358)
T ss_dssp HHHHTTSEEEEECCTTSSHHHH
T ss_pred HHhcCCCEEEEECCCCccHHHH
Confidence 3456888899999999999943
No 476
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=67.19 E-value=2.3 Score=32.03 Aligned_cols=18 Identities=17% Similarity=0.377 Sum_probs=15.3
Q ss_pred CCCeEEEcCCCCchhHHh
Q psy7268 76 GKSAILVAETGCGKTLSF 93 (134)
Q Consensus 76 g~dvli~a~tGsGKT~~~ 93 (134)
|+-+.+.|++|+|||...
T Consensus 170 g~k~~IvG~nGsGKSTLl 187 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLV 187 (365)
T ss_dssp CEEEEEECCTTSHHHHHH
T ss_pred hCeEEEECCCCCCHHHHH
Confidence 777899999999999643
No 477
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=67.03 E-value=5.2 Score=32.23 Aligned_cols=50 Identities=18% Similarity=0.169 Sum_probs=29.1
Q ss_pred CCCCHHHHHHHHHCCCCCCh----HHHHHHHH-----HHHcCCCeEEEcCCCCchhHHh
Q psy7268 44 TGLAPEIIDIFTKRGLTTPT----EIQKYSIP-----TLLSGKSAILVAETGCGKTLSF 93 (134)
Q Consensus 44 ~~l~~~i~~~l~~~g~~~~t----~iQ~~~i~-----~~~~g~dvli~a~tGsGKT~~~ 93 (134)
.+++..-++.+-+.|-..|. +.-...+. .+..|..+.+.|++|+|||...
T Consensus 328 ~~isgt~ir~~Lr~G~~~p~~f~~peV~~vLR~~~~~~~~~G~iI~LiG~sGSGKSTLa 386 (552)
T 3cr8_A 328 LTLSGEEFQRRMRAGLKIPEWYSFPEVLAELHRQTPPRERQGFTVFFTGLSGAGKSTLA 386 (552)
T ss_dssp ECCCHHHHHHHHTTTCCCCTTTSCHHHHHHHHHHSCCGGGSCEEEEEEESSCHHHHHHH
T ss_pred ccCCHHHHHHHHhcCCCCCccccccchhhhhhhhcccccccceEEEEECCCCChHHHHH
Confidence 44666656656555654331 11112222 2336777999999999998653
No 478
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=67.02 E-value=7.3 Score=35.75 Aligned_cols=25 Identities=20% Similarity=0.244 Sum_probs=18.6
Q ss_pred CCCeEEEcCCCCchhHHhHHHHHHH
Q psy7268 76 GKSAILVAETGCGKTLSFLAPLVQQ 100 (134)
Q Consensus 76 g~dvli~a~tGsGKT~~~~lpil~~ 100 (134)
|+-+++.+++|+|||...+--+.+.
T Consensus 383 G~lilI~G~pGsGKTtLaLq~a~~~ 407 (1706)
T 3cmw_A 383 GRIVEIYGPESSGKTTLTLQVIAAA 407 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 5568999999999997665444443
No 479
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=66.90 E-value=4.7 Score=29.57 Aligned_cols=25 Identities=28% Similarity=0.441 Sum_probs=19.1
Q ss_pred HHHHHHcCCCeEEEcCCCCchhHHh
Q psy7268 69 SIPTLLSGKSAILVAETGCGKTLSF 93 (134)
Q Consensus 69 ~i~~~~~g~dvli~a~tGsGKT~~~ 93 (134)
.+-.++.|+-+.+.+++|+|||...
T Consensus 158 ~L~~~l~G~i~~l~G~sG~GKSTLl 182 (302)
T 2yv5_A 158 ELVDYLEGFICILAGPSGVGKSSIL 182 (302)
T ss_dssp HHHHHTTTCEEEEECSTTSSHHHHH
T ss_pred HHHhhccCcEEEEECCCCCCHHHHH
Confidence 3445567888899999999998543
No 480
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=66.73 E-value=3.3 Score=26.90 Aligned_cols=15 Identities=20% Similarity=0.353 Sum_probs=12.6
Q ss_pred CeEEEcCCCCchhHH
Q psy7268 78 SAILVAETGCGKTLS 92 (134)
Q Consensus 78 dvli~a~tGsGKT~~ 92 (134)
.+.+.|++|+|||..
T Consensus 5 ~v~lvG~~gvGKStL 19 (165)
T 2wji_A 5 EIALIGNPNVGKSTI 19 (165)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478899999999943
No 481
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=66.72 E-value=3.3 Score=26.43 Aligned_cols=14 Identities=21% Similarity=0.423 Sum_probs=12.4
Q ss_pred CeEEEcCCCCchhH
Q psy7268 78 SAILVAETGCGKTL 91 (134)
Q Consensus 78 dvli~a~tGsGKT~ 91 (134)
.+++.|++|+|||.
T Consensus 7 ~i~v~G~~~~GKss 20 (168)
T 1z2a_A 7 KMVVVGNGAVGKSS 20 (168)
T ss_dssp EEEEECSTTSSHHH
T ss_pred EEEEECcCCCCHHH
Confidence 47899999999994
No 482
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=66.54 E-value=2.5 Score=29.62 Aligned_cols=20 Identities=25% Similarity=0.373 Sum_probs=16.1
Q ss_pred HcCCCeEEEcCCCCchhHHh
Q psy7268 74 LSGKSAILVAETGCGKTLSF 93 (134)
Q Consensus 74 ~~g~dvli~a~tGsGKT~~~ 93 (134)
+.|.-+++.|+.|+|||...
T Consensus 4 m~g~~i~~eG~~gsGKsT~~ 23 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNR 23 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHH
Confidence 45777889999999999664
No 483
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=66.21 E-value=7.1 Score=30.42 Aligned_cols=16 Identities=38% Similarity=0.362 Sum_probs=13.1
Q ss_pred CeEEEcCCCCchhHHh
Q psy7268 78 SAILVAETGCGKTLSF 93 (134)
Q Consensus 78 dvli~a~tGsGKT~~~ 93 (134)
-+.+.+++|+|||...
T Consensus 100 vi~i~G~~GsGKTT~~ 115 (425)
T 2ffh_A 100 LWFLVGLQGSGKTTTA 115 (425)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3677899999999764
No 484
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=66.10 E-value=2.9 Score=29.45 Aligned_cols=19 Identities=26% Similarity=0.300 Sum_probs=16.0
Q ss_pred cCCCeEEEcCCCCchhHHh
Q psy7268 75 SGKSAILVAETGCGKTLSF 93 (134)
Q Consensus 75 ~g~dvli~a~tGsGKT~~~ 93 (134)
.|.-+++.|+.|+|||...
T Consensus 4 ~g~~i~~eG~~g~GKst~~ 22 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQC 22 (216)
T ss_dssp CCCEEEEEECSSSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 4777899999999999654
No 485
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=65.83 E-value=2.7 Score=30.60 Aligned_cols=17 Identities=12% Similarity=0.178 Sum_probs=14.4
Q ss_pred CCeEEEcCCCCchhHHh
Q psy7268 77 KSAILVAETGCGKTLSF 93 (134)
Q Consensus 77 ~dvli~a~tGsGKT~~~ 93 (134)
..++|.|+.|+|||...
T Consensus 31 ~~v~i~G~~G~GKT~L~ 47 (357)
T 2fna_A 31 PITLVLGLRRTGKSSII 47 (357)
T ss_dssp SEEEEEESTTSSHHHHH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 57899999999999543
No 486
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=65.33 E-value=3.6 Score=26.65 Aligned_cols=15 Identities=33% Similarity=0.627 Sum_probs=12.9
Q ss_pred CeEEEcCCCCchhHH
Q psy7268 78 SAILVAETGCGKTLS 92 (134)
Q Consensus 78 dvli~a~tGsGKT~~ 92 (134)
.+++.|++|+|||..
T Consensus 10 ~i~v~G~~~~GKSsl 24 (182)
T 1ky3_A 10 KVIILGDSGVGKTSL 24 (182)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 589999999999943
No 487
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=65.01 E-value=8.8 Score=30.71 Aligned_cols=20 Identities=25% Similarity=0.220 Sum_probs=15.3
Q ss_pred CCeEEEcCCCCchhHHhHHH
Q psy7268 77 KSAILVAETGCGKTLSFLAP 96 (134)
Q Consensus 77 ~dvli~a~tGsGKT~~~~lp 96 (134)
+-+++.+..|.|||.+.+.-
T Consensus 9 ~i~~~sgkGGvGKTT~a~~l 28 (589)
T 1ihu_A 9 PYLFFTGKGGVGKTSISCAT 28 (589)
T ss_dssp SEEEEECSTTSSHHHHHHHH
T ss_pred EEEEEeCCCcCHHHHHHHHH
Confidence 34777899999999886443
No 488
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=65.01 E-value=3.6 Score=27.22 Aligned_cols=15 Identities=40% Similarity=0.603 Sum_probs=12.7
Q ss_pred CeEEEcCCCCchhHH
Q psy7268 78 SAILVAETGCGKTLS 92 (134)
Q Consensus 78 dvli~a~tGsGKT~~ 92 (134)
.+++.|++|+|||..
T Consensus 4 kv~ivG~~gvGKStL 18 (184)
T 2zej_A 4 KLMIVGNTGSGKTTL 18 (184)
T ss_dssp EEEEESCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478999999999944
No 489
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=64.81 E-value=2.7 Score=29.88 Aligned_cols=19 Identities=16% Similarity=0.107 Sum_probs=15.0
Q ss_pred cCCCeEEEcCCCCchhHHh
Q psy7268 75 SGKSAILVAETGCGKTLSF 93 (134)
Q Consensus 75 ~g~dvli~a~tGsGKT~~~ 93 (134)
++.-+++.|+.|+|||...
T Consensus 23 ~~~~I~ieG~~GsGKST~~ 41 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFV 41 (263)
T ss_dssp CCEEEEEECSTTSSHHHHH
T ss_pred CceEEEEECCCCCCHHHHH
Confidence 3456889999999999653
No 490
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=64.67 E-value=3.8 Score=26.11 Aligned_cols=15 Identities=27% Similarity=0.454 Sum_probs=12.7
Q ss_pred CeEEEcCCCCchhHH
Q psy7268 78 SAILVAETGCGKTLS 92 (134)
Q Consensus 78 dvli~a~tGsGKT~~ 92 (134)
.+++.|++|+|||..
T Consensus 5 ~i~v~G~~~~GKssl 19 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSI 19 (170)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 578999999999943
No 491
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=64.56 E-value=3 Score=27.45 Aligned_cols=16 Identities=19% Similarity=0.470 Sum_probs=13.5
Q ss_pred CCCeEEEcCCCCchhH
Q psy7268 76 GKSAILVAETGCGKTL 91 (134)
Q Consensus 76 g~dvli~a~tGsGKT~ 91 (134)
|..+++.|++|+|||.
T Consensus 4 ~~ki~ivG~~g~GKSt 19 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSS 19 (172)
T ss_dssp CEEEEEEESTTSSHHH
T ss_pred CCEEEEECCCCCCHHH
Confidence 4468899999999994
No 492
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=64.41 E-value=5.2 Score=29.25 Aligned_cols=21 Identities=29% Similarity=0.450 Sum_probs=17.1
Q ss_pred HHHcCCCeEEEcCCCCchhHH
Q psy7268 72 TLLSGKSAILVAETGCGKTLS 92 (134)
Q Consensus 72 ~~~~g~dvli~a~tGsGKT~~ 92 (134)
.++.|+-+.+.+|+|+|||..
T Consensus 165 ~~l~geiv~l~G~sG~GKSTl 185 (301)
T 1u0l_A 165 EYLKGKISTMAGLSGVGKSSL 185 (301)
T ss_dssp HHHSSSEEEEECSTTSSHHHH
T ss_pred HHhcCCeEEEECCCCCcHHHH
Confidence 455788889999999999843
No 493
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=64.40 E-value=3.8 Score=26.16 Aligned_cols=14 Identities=36% Similarity=0.629 Sum_probs=12.4
Q ss_pred CeEEEcCCCCchhH
Q psy7268 78 SAILVAETGCGKTL 91 (134)
Q Consensus 78 dvli~a~tGsGKT~ 91 (134)
.+++.|++|+|||.
T Consensus 8 ~i~v~G~~~~GKSs 21 (170)
T 1z0j_A 8 KVCLLGDTGVGKSS 21 (170)
T ss_dssp EEEEECCTTSSHHH
T ss_pred EEEEECcCCCCHHH
Confidence 58899999999994
No 494
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=64.39 E-value=3.3 Score=29.52 Aligned_cols=20 Identities=20% Similarity=0.411 Sum_probs=16.1
Q ss_pred HcCCCeEEEcCCCCchhHHh
Q psy7268 74 LSGKSAILVAETGCGKTLSF 93 (134)
Q Consensus 74 ~~g~dvli~a~tGsGKT~~~ 93 (134)
+.|.-+++.|+.|+|||...
T Consensus 25 ~~~~~i~~eG~~GsGKsT~~ 44 (236)
T 3lv8_A 25 MNAKFIVIEGLEGAGKSTAI 44 (236)
T ss_dssp -CCCEEEEEESTTSCHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHH
Confidence 35778999999999999653
No 495
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=64.32 E-value=3.8 Score=26.87 Aligned_cols=15 Identities=20% Similarity=0.353 Sum_probs=12.9
Q ss_pred CeEEEcCCCCchhHH
Q psy7268 78 SAILVAETGCGKTLS 92 (134)
Q Consensus 78 dvli~a~tGsGKT~~ 92 (134)
.+++.|++|+|||..
T Consensus 9 ~i~lvG~~gvGKStL 23 (188)
T 2wjg_A 9 EIALIGNPNVGKSTI 23 (188)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 588999999999944
No 496
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=64.25 E-value=2 Score=31.54 Aligned_cols=15 Identities=13% Similarity=0.248 Sum_probs=9.7
Q ss_pred eEEEcCCCCchhHHh
Q psy7268 79 AILVAETGCGKTLSF 93 (134)
Q Consensus 79 vli~a~tGsGKT~~~ 93 (134)
+.+.|++|||||...
T Consensus 8 IgItG~sGSGKSTva 22 (290)
T 1a7j_A 8 ISVTGSSGAGTSTVK 22 (290)
T ss_dssp EEEESCC---CCTHH
T ss_pred EEEECCCCCCHHHHH
Confidence 678899999999764
No 497
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=64.21 E-value=9.9 Score=28.01 Aligned_cols=17 Identities=29% Similarity=0.304 Sum_probs=13.3
Q ss_pred eEEEcCCCCchhHHhHH
Q psy7268 79 AILVAETGCGKTLSFLA 95 (134)
Q Consensus 79 vli~a~tGsGKT~~~~l 95 (134)
++..+..|.|||.+...
T Consensus 17 ~v~sgKGGvGKTTvA~~ 33 (324)
T 3zq6_A 17 VFIGGKGGVGKTTISAA 33 (324)
T ss_dssp EEEEESTTSSHHHHHHH
T ss_pred EEEeCCCCchHHHHHHH
Confidence 56678999999987643
No 498
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=64.21 E-value=2.7 Score=29.46 Aligned_cols=17 Identities=12% Similarity=0.145 Sum_probs=13.9
Q ss_pred CCCeEEEcCCCCchhHH
Q psy7268 76 GKSAILVAETGCGKTLS 92 (134)
Q Consensus 76 g~dvli~a~tGsGKT~~ 92 (134)
+.-+++.|..|+|||..
T Consensus 2 ~~~i~~~G~~g~GKtt~ 18 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTF 18 (241)
T ss_dssp CEEEEEEECTTSSHHHH
T ss_pred CeEEEEEcCCCCCHHHH
Confidence 34578899999999964
No 499
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=64.17 E-value=3.9 Score=25.91 Aligned_cols=15 Identities=33% Similarity=0.547 Sum_probs=12.9
Q ss_pred CeEEEcCCCCchhHH
Q psy7268 78 SAILVAETGCGKTLS 92 (134)
Q Consensus 78 dvli~a~tGsGKT~~ 92 (134)
.+++.|++|+|||..
T Consensus 6 ~i~v~G~~~~GKssl 20 (168)
T 1u8z_A 6 KVIMVGSGGVGKSAL 20 (168)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 588999999999943
No 500
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=63.86 E-value=4 Score=25.86 Aligned_cols=15 Identities=20% Similarity=0.470 Sum_probs=12.9
Q ss_pred CeEEEcCCCCchhHH
Q psy7268 78 SAILVAETGCGKTLS 92 (134)
Q Consensus 78 dvli~a~tGsGKT~~ 92 (134)
.+++.|++|+|||..
T Consensus 5 ~i~v~G~~~~GKSsl 19 (167)
T 1kao_A 5 KVVVLGSGGVGKSAL 19 (167)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 588999999999943
Done!