RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7268
(134 letters)
>d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase
VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]}
Length = 238
Score = 69.2 bits (168), Expect = 7e-16
Identities = 29/92 (31%), Positives = 45/92 (48%)
Query: 40 TFEDTGLAPEIIDIFTKRGLTTPTEIQKYSIPTLLSGKSAILVAETGCGKTLSFLAPLVQ 99
F++ L P I + PT IQK +IP +L + + A+TG GKT +FL P++
Sbjct: 22 NFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIIN 81
Query: 100 QILTWKSRPEYKPELNAPLALIITPGRELVFQ 131
++ + + P LI+ P REL Q
Sbjct: 82 HLVCQDLNQQRYSKTAYPKCLILAPTRELAIQ 113
>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo
sapiens) [TaxId: 9606]}
Length = 218
Score = 61.8 bits (149), Expect = 3e-13
Identities = 26/93 (27%), Positives = 43/93 (46%), Gaps = 9/93 (9%)
Query: 40 TFEDTGLAPEIIDIFTKRGLTTPTEIQKYSIPTLLSGKSAILVAETGCGKTLSFLAPLVQ 99
+F+D L+ ++ G P+ IQ+ +I + G I A++G GKT +F
Sbjct: 13 SFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFA----- 67
Query: 100 QILTWKSRPEYKPELNAPLALIITPGRELVFQI 132
+ + +L A AL++ P REL QI
Sbjct: 68 ----ISILQQIELDLKATQALVLAPTRELAQQI 96
>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase
DDX48 {Human (Homo sapiens) [TaxId: 9606]}
Length = 222
Score = 61.0 bits (147), Expect = 6e-13
Identities = 17/69 (24%), Positives = 34/69 (49%)
Query: 40 TFEDTGLAPEIIDIFTKRGLTTPTEIQKYSIPTLLSGKSAILVAETGCGKTLSFLAPLVQ 99
TF+ GL +++ G P+ IQ+ +I ++ G+ I +++G GKT +F ++Q
Sbjct: 18 TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQ 77
Query: 100 QILTWKSRP 108
+
Sbjct: 78 CLDIQVRET 86
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse
gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 237
Score = 60.3 bits (145), Expect = 1e-12
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Query: 38 LGTFEDTGLAPEIIDIFTKRGLTTPTEIQKYSIPTLLSGKSAILVAETGCGKTLSFLAPL 97
L F + L E ++ F ++ + P IQK +L +S A TG GKT LA
Sbjct: 21 LCLFPEDFLLKEFVEFF-RKCVGEPRAIQKMWAKRILRKESFAATAPTGVGKTSFGLAMS 79
Query: 98 VQQILTWK 105
+ L K
Sbjct: 80 LFLALKGK 87
>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus
[TaxId: 2234]}
Length = 202
Score = 57.7 bits (138), Expect = 8e-12
Identities = 18/95 (18%), Positives = 36/95 (37%), Gaps = 14/95 (14%)
Query: 40 TFED--TGLAPEIIDIFTKRGLTTPTEIQKYSIPTLLSGKSAILVAETGCGKTLSFLAPL 97
E+ ++ + I + G+ Q ++ + SGK+ +L T GKTL +
Sbjct: 2 KVEELAESISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAM 61
Query: 98 VQQILTWKSRPEYKPELNAPLALIITPGRELVFQI 132
V++ + +L + P R L +
Sbjct: 62 VREAIKG------------GKSLYVVPLRALAGEK 84
>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 207
Score = 57.2 bits (137), Expect = 1e-11
Identities = 20/69 (28%), Positives = 32/69 (46%)
Query: 40 TFEDTGLAPEIIDIFTKRGLTTPTEIQKYSIPTLLSGKSAILVAETGCGKTLSFLAPLVQ 99
F D L PE++ G P+E+Q IP + G + A++G GKT F+ +Q
Sbjct: 2 GFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQ 61
Query: 100 QILTWKSRP 108
Q+ +
Sbjct: 62 QLEPVTGQV 70
>d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 206
Score = 56.9 bits (136), Expect = 2e-11
Identities = 23/71 (32%), Positives = 39/71 (54%)
Query: 40 TFEDTGLAPEIIDIFTKRGLTTPTEIQKYSIPTLLSGKSAILVAETGCGKTLSFLAPLVQ 99
FED L E++ + G P+ IQ+ SIP LSG+ + A+ G GK+ ++L PL++
Sbjct: 4 EFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLE 63
Query: 100 QILTWKSRPEY 110
++ K +
Sbjct: 64 RLDLKKDNIQA 74
>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase
DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 206
Score = 56.1 bits (134), Expect = 4e-11
Identities = 20/61 (32%), Positives = 36/61 (59%)
Query: 40 TFEDTGLAPEIIDIFTKRGLTTPTEIQKYSIPTLLSGKSAILVAETGCGKTLSFLAPLVQ 99
TFED L E++ + G P+ IQ+ +IP ++G+ + A+ G GKT +F+ P ++
Sbjct: 2 TFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLE 61
Query: 100 Q 100
+
Sbjct: 62 K 62
>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 212
Score = 56.0 bits (134), Expect = 4e-11
Identities = 19/69 (27%), Positives = 33/69 (47%)
Query: 40 TFEDTGLAPEIIDIFTKRGLTTPTEIQKYSIPTLLSGKSAILVAETGCGKTLSFLAPLVQ 99
F+D L ++ G P+ IQ+ +I ++ G + A++G GKT +F +Q
Sbjct: 11 KFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQ 70
Query: 100 QILTWKSRP 108
+I T P
Sbjct: 71 RIDTSVKAP 79
>d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 209
Score = 54.7 bits (130), Expect = 1e-10
Identities = 19/54 (35%), Positives = 27/54 (50%)
Query: 40 TFEDTGLAPEIIDIFTKRGLTTPTEIQKYSIPTLLSGKSAILVAETGCGKTLSF 93
F P II+ PTEIQ+ IP L G+S + ++TG GKT ++
Sbjct: 2 QFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAY 55
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus
type 2 [TaxId: 11060]}
Length = 305
Score = 53.0 bits (126), Expect = 7e-10
Identities = 12/62 (19%), Positives = 24/62 (38%), Gaps = 11/62 (17%)
Query: 73 LLSGKSAILVAETGCGKTLSFLAPLVQQILTWKSRPEYKPELNAPLALIITPGRELVFQI 132
+ I+ G GKT +L +V++ + R LI+ P R + ++
Sbjct: 6 FRKKRLTIMDLHPGAGKTKRYLPAIVREAIKRGLR-----------TLILAPTRVVAAEM 54
Query: 133 GQ 134
+
Sbjct: 55 EE 56
>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 208
Score = 51.2 bits (122), Expect = 2e-09
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 40 TFEDTGLAPEIIDIFTKRGLTTPTEIQKYSIPTLLSGKSAILV-AETGCGKTLSFLAPLV 98
F + L+ I++ +G PT+IQ IP L+ + I+ A TG GKT SF PL+
Sbjct: 5 NFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLI 64
Query: 99 QQILTW 104
+ +
Sbjct: 65 ELVNEN 70
>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli
[TaxId: 562]}
Length = 206
Score = 50.0 bits (118), Expect = 6e-09
Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
Query: 40 TFEDTGLAPEIIDIFTKR-GLTTPTEIQKYSIPTLLSGKSAILVAETGCGKTLSFLAPLV 98
E L + + G Q+ I T+LSG+ ++V TG GK+L + P +
Sbjct: 3 QAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPAL 62
Query: 99 QQI 101
Sbjct: 63 LLN 65
>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase
PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Length = 200
Score = 39.4 bits (90), Expect = 4e-05
Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Query: 56 KRGLTTPTEIQKYSIPTLLSGKSAILVAETGCGKTLSFLAPLVQQILTWK 105
+R L P Q+ + ++V TG GKTL + ++ +
Sbjct: 4 RRDLIQPRIYQEVIYAKCK-ETNCLIVLPTGLGKTLIAMMIAEYRLTKYG 52
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever
virus [TaxId: 11089]}
Length = 140
Score = 33.1 bits (74), Expect = 0.004
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 73 LLSGKSAILVAETGCGKTLSFLAPLVQQILTWK 105
L G + +L G GKT FL ++ + +
Sbjct: 4 LKKGMTTVLDFHPGAGKTRRFLPQILAECARRR 36
>d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio
rerio) [TaxId: 7955]}
Length = 298
Score = 28.5 bits (62), Expect = 0.20
Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 5/56 (8%)
Query: 76 GKSAILVAETGCGKTLSFLAPLVQQILTWKSRPEYKPELNAPLALIITPGRELVFQ 131
I+ E G GKTL + + K P+ KPE++ ++++P +
Sbjct: 79 SYGCIMADEMGLGKTLQCITLIWTL---LKQSPDCKPEIDK--VIVVSPSSLVRNW 129
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human
hepatitis C virus (HCV), different isolates [TaxId:
11103]}
Length = 136
Score = 27.1 bits (59), Expect = 0.42
Identities = 9/30 (30%), Positives = 12/30 (40%), Gaps = 8/30 (26%)
Query: 62 PTEIQKYSIPTLLSGKSAILVAETGCGKTL 91
P Q + + A L A TG GK+
Sbjct: 2 PAVPQSFQV--------AHLHAPTGSGKST 23
>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA
{Escherichia coli [TaxId: 562]}
Length = 274
Score = 27.7 bits (60), Expect = 0.42
Identities = 11/42 (26%), Positives = 20/42 (47%), Gaps = 5/42 (11%)
Query: 49 EIIDIFTKRGLTTPTEIQKYSIPTLLSGKSAILVAETGCGKT 90
I++ F P + Y +P +++G LV+ G GK+
Sbjct: 7 NILEAFA----AAPPPL-DYVLPNMVAGTVGALVSPGGAGKS 43
>d1rg6a_ a.60.1.2 (A:) C-terminal domain of p63 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 67
Score = 25.9 bits (57), Expect = 0.62
Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 17/61 (27%)
Query: 51 IDIFTKRGLTTPTEIQKYSIPTLLSGKSAILVAETGCGKTLSFLAPLVQQILTWKSRPEY 110
+D FT +GLTT +I+ YS+ L S K P + WK ++
Sbjct: 19 LDYFTTQGLTTIYQIEHYSMDDLASLK-----------------IPEQFRHAIWKGILDH 61
Query: 111 K 111
+
Sbjct: 62 R 62
>d1qyna_ d.33.1.1 (A:) Bacterial protein-export protein SecB
{Escherichia coli [TaxId: 562]}
Length = 134
Score = 26.0 bits (57), Expect = 1.1
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 89 KTLSFLAPLVQQILTWKSRPEYKPELN 115
K +SF AP + +PE K +L+
Sbjct: 11 KDISFEAPNAPHVFQKDWQPEVKLDLD 37
>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB
{Escherichia coli [TaxId: 562]}
Length = 433
Score = 26.4 bits (57), Expect = 1.4
Identities = 9/61 (14%), Positives = 20/61 (32%), Gaps = 3/61 (4%)
Query: 47 APEIIDIFTKRGLTTPTEIQKYSIPTLLSGKSAILVAETGCGKTLSFLAPLVQQILTWKS 106
++ + ++ + +P + ++ TG GK+ L L L
Sbjct: 23 GGKLKRMTREKA--KQVTVAGVPMPRDAEPRHLLVNGATGTGKS-VLLRELAYTGLLRGD 79
Query: 107 R 107
R
Sbjct: 80 R 80
>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal
domain {Thermotoga maritima [TaxId: 2336]}
Length = 225
Score = 25.8 bits (56), Expect = 1.5
Identities = 14/84 (16%), Positives = 24/84 (28%), Gaps = 29/84 (34%)
Query: 34 SRID--LGTFEDTGLAPEIIDIFTKRGLTTPTEIQK------------------------ 67
ID L E L ++ K L +++K
Sbjct: 28 YIIDKFLVLAEKNELETVMV--INKMDLYDEDDLRKVRELEEIYSGLYPIVKTSAKTGMG 85
Query: 68 -YSIPTLLSGKSAILVAETGCGKT 90
+ L GK + + +G GK+
Sbjct: 86 IEELKEYLKGKISTMAGLSGVGKS 109
>d1knwa2 c.1.6.1 (A:32-278) Diaminopimelate decarboxylase LysA
{Escherichia coli [TaxId: 562]}
Length = 247
Score = 25.9 bits (55), Expect = 1.8
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 105 KSRPEYKPELNAPLALIITPGRELV 129
+R + L P+ L I PGR LV
Sbjct: 219 AAREQIARHLGHPVKLEIEPGRFLV 243
>d1ozba_ d.33.1.1 (A:) Bacterial protein-export protein SecB
{Haemophilus influenzae [TaxId: 727]}
Length = 144
Score = 25.3 bits (55), Expect = 2.2
Identities = 8/28 (28%), Positives = 15/28 (53%)
Query: 89 KTLSFLAPLVQQILTWKSRPEYKPELNA 116
K +SF AP + I + +P+ +L+
Sbjct: 11 KDVSFEAPNLPHIFQQEWKPKLGFDLST 38
>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Length = 443
Score = 25.5 bits (55), Expect = 2.3
Identities = 7/29 (24%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 74 LSGKSAILVAETGCGKTLSFLAPLVQQIL 102
++ K+ +++ TG GKT +A + ++
Sbjct: 47 VTPKNILMIGPTGVGKTE--IARRLAKLA 73
>d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily
{Sulfolobus solfataricus [TaxId: 2287]}
Length = 230
Score = 25.0 bits (53), Expect = 3.4
Identities = 9/34 (26%), Positives = 12/34 (35%)
Query: 75 SGKSAILVAETGCGKTLSFLAPLVQQILTWKSRP 108
G L + G GKTL +A + P
Sbjct: 30 LGFGICLADDMGLGKTLQTIAVFSDAKKENELTP 63
>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Length = 309
Score = 24.8 bits (53), Expect = 4.6
Identities = 6/22 (27%), Positives = 12/22 (54%)
Query: 74 LSGKSAILVAETGCGKTLSFLA 95
++ K+ +++ TG GKT
Sbjct: 47 VTPKNILMIGPTGVGKTEIARR 68
>d1d2na_ c.37.1.20 (A:) Hexamerization domain of
N-ethylmalemide-sensitive fusion (NSF) protein {Chinese
hamster (Cricetulus griseus) [TaxId: 10029]}
Length = 246
Score = 24.1 bits (51), Expect = 7.5
Identities = 6/27 (22%), Positives = 9/27 (33%)
Query: 65 IQKYSIPTLLSGKSAILVAETGCGKTL 91
+Q+ S +L GKT
Sbjct: 29 VQQTKNSDRTPLVSVLLEGPPHSGKTA 55
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.137 0.405
Gapped
Lambda K H
0.267 0.0438 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 472,630
Number of extensions: 18905
Number of successful extensions: 106
Number of sequences better than 10.0: 1
Number of HSP's gapped: 105
Number of HSP's successfully gapped: 28
Length of query: 134
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 58
Effective length of database: 1,364,116
Effective search space: 79118728
Effective search space used: 79118728
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.0 bits)