Query psy7269
Match_columns 235
No_of_seqs 201 out of 1445
Neff 6.5
Searched_HMMs 46136
Date Fri Aug 16 22:22:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7269.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7269hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0143 MetG Methionyl-tRNA sy 100.0 8.2E-52 1.8E-56 397.2 16.3 198 1-213 197-413 (558)
2 PLN02610 probable methionyl-tR 100.0 9.6E-50 2.1E-54 398.0 17.2 200 1-210 212-430 (801)
3 KOG0436|consensus 100.0 1.9E-45 4.2E-50 336.9 10.8 178 1-198 209-409 (578)
4 PRK12267 methionyl-tRNA synthe 100.0 1.4E-44 3E-49 355.1 16.0 193 1-213 168-379 (648)
5 PF09334 tRNA-synt_1g: tRNA sy 100.0 9E-46 2E-50 344.6 5.2 183 1-197 191-391 (391)
6 PRK00133 metG methionyl-tRNA s 100.0 6.5E-44 1.4E-48 351.7 16.6 194 1-209 194-406 (673)
7 PLN02224 methionine-tRNA ligas 100.0 6E-44 1.3E-48 347.8 16.0 192 1-211 233-444 (616)
8 KOG1247|consensus 100.0 2.2E-44 4.7E-49 329.4 8.6 201 1-211 207-422 (567)
9 TIGR00398 metG methionyl-tRNA 100.0 3.6E-40 7.9E-45 316.8 17.3 194 1-209 191-403 (530)
10 PRK12268 methionyl-tRNA synthe 100.0 9.2E-39 2E-43 308.6 16.9 197 1-209 196-410 (556)
11 cd00814 MetRS_core catalytic c 100.0 2.3E-36 5E-41 274.2 11.9 159 1-174 147-319 (319)
12 PRK11893 methionyl-tRNA synthe 100.0 2.8E-35 6E-40 281.1 16.5 190 1-210 166-376 (511)
13 PRK14900 valS valyl-tRNA synth 100.0 4.6E-33 1E-37 285.3 12.3 179 1-201 382-603 (1052)
14 TIGR00422 valS valyl-tRNA synt 100.0 2.2E-31 4.8E-36 268.9 12.3 181 1-200 365-589 (861)
15 cd00817 ValRS_core catalytic c 100.0 9E-31 2E-35 243.2 11.4 155 1-174 178-382 (382)
16 cd00818 IleRS_core catalytic c 100.0 1.4E-30 3.1E-35 238.4 9.7 153 1-174 160-338 (338)
17 PLN02943 aminoacyl-tRNA ligase 100.0 2E-29 4.4E-34 256.7 14.1 176 1-198 417-645 (958)
18 TIGR00392 ileS isoleucyl-tRNA 100.0 1.2E-29 2.6E-34 256.4 11.5 175 1-197 431-673 (861)
19 PTZ00419 valyl-tRNA synthetase 100.0 7.8E-29 1.7E-33 253.6 10.3 181 1-202 411-689 (995)
20 cd00668 Ile_Leu_Val_MetRS_core 100.0 1.5E-28 3.2E-33 222.1 10.8 150 1-174 149-312 (312)
21 PRK05729 valS valyl-tRNA synth 100.0 1.5E-28 3.1E-33 248.8 11.6 177 1-199 367-583 (874)
22 PRK06039 ileS isoleucyl-tRNA s 100.0 2.3E-28 4.9E-33 249.7 10.2 175 1-197 413-655 (975)
23 TIGR00395 leuS_arch leucyl-tRN 99.9 8.4E-28 1.8E-32 244.6 11.0 181 1-199 455-684 (938)
24 PRK05743 ileS isoleucyl-tRNA s 99.9 1.4E-27 3.1E-32 242.3 10.6 173 1-197 422-653 (912)
25 PLN02882 aminoacyl-tRNA ligase 99.9 1.3E-26 2.9E-31 239.3 13.2 185 2-208 435-693 (1159)
26 PRK13208 valS valyl-tRNA synth 99.9 1.3E-26 2.9E-31 232.7 12.8 177 1-197 365-594 (800)
27 PRK13804 ileS isoleucyl-tRNA s 99.9 2.1E-26 4.6E-31 234.7 12.7 176 2-202 459-696 (961)
28 COG0525 ValS Valyl-tRNA synthe 99.9 2.5E-26 5.5E-31 228.3 11.1 172 2-194 366-584 (877)
29 PRK12300 leuS leucyl-tRNA synt 99.9 2.3E-25 5E-30 226.0 10.6 178 2-197 409-639 (897)
30 PLN02381 valyl-tRNA synthetase 99.9 9.3E-25 2E-29 224.4 11.0 175 2-197 479-754 (1066)
31 PLN02843 isoleucyl-tRNA synthe 99.9 1.6E-24 3.5E-29 221.1 12.5 173 2-198 438-682 (974)
32 cd00812 LeuRS_core catalytic c 99.9 1.1E-24 2.4E-29 197.5 7.4 147 1-176 141-314 (314)
33 PTZ00427 isoleucine-tRNA ligas 99.9 4.8E-24 1E-28 220.5 11.2 162 15-196 550-783 (1205)
34 COG0060 IleS Isoleucyl-tRNA sy 99.9 3.4E-23 7.4E-28 207.8 11.2 172 2-194 426-660 (933)
35 PLN02959 aminoacyl-tRNA ligase 99.9 3.4E-21 7.4E-26 198.5 13.8 161 2-181 546-764 (1084)
36 PF00133 tRNA-synt_1: tRNA syn 99.8 6.3E-22 1.4E-26 193.5 4.7 154 2-175 386-601 (601)
37 KOG0432|consensus 99.8 4.2E-20 9.1E-25 181.8 6.9 163 15-198 438-693 (995)
38 PRK00390 leuS leucyl-tRNA synt 99.8 6.5E-19 1.4E-23 177.4 8.8 147 32-195 415-630 (805)
39 KOG0433|consensus 99.7 7.6E-17 1.7E-21 156.7 11.4 175 5-206 441-689 (937)
40 TIGR00396 leuS_bact leucyl-tRN 99.7 7.9E-17 1.7E-21 162.9 7.8 154 31-199 410-668 (842)
41 PLN02563 aminoacyl-tRNA ligase 99.7 2.4E-16 5.1E-21 160.9 8.8 159 19-194 481-782 (963)
42 KOG0434|consensus 99.5 4.2E-14 9.1E-19 137.1 6.2 167 8-193 427-661 (1070)
43 COG0495 LeuS Leucyl-tRNA synth 99.1 1.4E-10 3E-15 116.4 5.8 153 31-198 418-642 (814)
44 KOG0435|consensus 99.0 5E-10 1.1E-14 109.0 5.5 155 31-199 418-681 (876)
45 PTZ00399 cysteinyl-tRNA-synthe 98.8 2.8E-09 6.1E-14 105.6 4.3 144 32-201 216-380 (651)
46 PRK14536 cysS cysteinyl-tRNA s 98.1 1.4E-05 3E-10 77.1 10.3 131 31-196 199-340 (490)
47 PRK14534 cysS cysteinyl-tRNA s 98.0 3.2E-05 6.9E-10 74.4 10.5 94 93-196 236-340 (481)
48 TIGR00435 cysS cysteinyl-tRNA 97.7 0.00018 3.9E-09 69.1 9.2 97 93-199 222-328 (465)
49 TIGR00456 argS arginyl-tRNA sy 97.6 5.3E-05 1.2E-09 74.3 3.9 103 91-206 329-466 (566)
50 PRK00260 cysS cysteinyl-tRNA s 97.5 0.00032 7E-09 67.2 8.5 94 93-197 223-327 (463)
51 KOG0437|consensus 97.3 0.00016 3.5E-09 72.0 3.6 141 16-176 550-751 (1080)
52 cd00672 CysRS_core catalytic c 96.9 0.0027 5.8E-08 55.0 6.4 60 93-154 131-201 (213)
53 TIGR03447 mycothiol_MshC cyste 95.9 0.016 3.6E-07 54.9 6.2 94 93-196 244-349 (411)
54 PRK12418 cysteinyl-tRNA synthe 95.8 0.025 5.3E-07 53.3 6.7 93 93-195 217-321 (384)
55 cd00674 LysRS_core_class_I cat 95.1 0.091 2E-06 49.0 7.9 73 93-177 230-317 (353)
56 PLN02946 cysteine-tRNA ligase 94.6 0.064 1.4E-06 52.8 5.7 97 93-200 280-387 (557)
57 PRK00750 lysK lysyl-tRNA synth 94.5 0.15 3.2E-06 49.7 8.0 72 93-176 237-321 (510)
58 KOG1247|consensus 93.9 0.063 1.4E-06 51.0 3.8 36 124-159 531-566 (567)
59 PRK14535 cysS cysteinyl-tRNA s 93.9 0.29 6.4E-06 49.2 8.7 95 93-196 449-568 (699)
60 PRK01611 argS arginyl-tRNA syn 89.2 0.44 9.6E-06 46.2 4.1 99 91-203 274-407 (507)
61 TIGR00467 lysS_arch lysyl-tRNA 88.6 2.5 5.4E-05 41.4 8.7 40 131-179 278-317 (515)
62 cd07957 Anticodon_Ia_Met Antic 85.1 0.66 1.4E-05 35.4 2.2 30 184-213 4-33 (129)
63 COG0215 CysS Cysteinyl-tRNA sy 83.8 3.8 8.2E-05 39.6 7.1 95 93-197 224-329 (464)
64 PF01406 tRNA-synt_1e: tRNA sy 82.4 3 6.4E-05 38.2 5.5 80 93-181 209-297 (300)
65 KOG2007|consensus 66.7 9.7 0.00021 37.3 4.8 57 129-194 303-363 (586)
66 COG0018 ArgS Arginyl-tRNA synt 63.5 13 0.00029 37.0 5.2 81 91-183 336-452 (577)
67 cd07959 Anticodon_Ia_Leu_AEc A 55.7 8 0.00017 28.9 1.8 26 184-209 4-29 (117)
68 PF10929 DUF2811: Protein of u 32.4 48 0.001 22.9 2.5 37 2-39 11-50 (57)
69 COG1384 LysS Lysyl-tRNA synthe 32.4 70 0.0015 31.5 4.5 62 93-154 232-304 (521)
70 PF00458 WHEP-TRS: WHEP-TRS do 31.5 41 0.0009 23.0 2.1 15 183-197 2-16 (56)
71 PF01921 tRNA-synt_1f: tRNA sy 30.7 74 0.0016 29.9 4.3 62 93-154 237-309 (360)
72 PF03185 CaKB: Calcium-activat 27.6 20 0.00044 30.9 0.0 16 102-117 167-182 (201)
73 PF11390 FdsD: NADH-dependant 26.7 99 0.0021 21.5 3.3 24 4-30 25-48 (61)
74 PLN02286 arginine-tRNA ligase 26.4 1.7E+02 0.0036 29.2 6.1 83 91-183 329-454 (576)
75 PRK12451 arginyl-tRNA syntheta 24.8 69 0.0015 31.7 3.1 82 91-182 326-442 (562)
76 cd07375 Anticodon_Ia_like Anti 20.4 90 0.0019 22.5 2.4 26 184-209 5-30 (117)
No 1
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.2e-52 Score=397.22 Aligned_cols=198 Identities=31% Similarity=0.528 Sum_probs=182.0
Q ss_pred ChHHHHHHHHhCCCC-CChhHHHHHHHHHhcCCCCcccee-ccCCccccCCCCCCCCeEEEeccCccchhhcccccc---
Q psy7269 1 IEDKLQSWVSETSDQ-WSSNARVICKAWLKDGLKPRCITR-DLKWGIPVPLPGFENKVFYVWFDAPIGYMSLTQSYC--- 75 (235)
Q Consensus 1 ~~~~L~e~~~~~~~~-~p~~~~~~~~~~l~~gL~Dw~ISR-~~~WGIpvP~~~~~~~viyVWfDa~~~yls~~~~~~--- 75 (235)
|+++|++|+++++.+ ||++.++.+.+||++||.|||||| +.+||||||.+ ++||+||||||++||+|++..+.
T Consensus 197 ~~~~L~~~~~~~~~~~~p~~~~ne~~~~i~~GL~d~~IsR~~~~WGipvP~~--p~kv~YVWfDAligYisa~~~~~~~~ 274 (558)
T COG0143 197 FQDKLLEWYESNPDFIWPANRRNEVLNFLKEGLKDLSITRTDLDWGIPVPGD--PGKVIYVWFDALIGYISALGELAEIG 274 (558)
T ss_pred hHHHHHHHHHhCccccCChHHHHHHHHHHHccCcccceecCCCCCCccCCCC--CCCEEEEeeccHHHHHHHhcchhccC
Confidence 689999999998754 999999999999999999999999 99999999944 99999999999999999997764
Q ss_pred --hhhhhhcCCCCCCCceeEEEeecCCcchhhhHHHHHHHHhCCCcccceeeecccc----------ccCCCCChHHHHh
Q psy7269 76 --GQYEAWWKSAPQSKITLYQFMAKDNVPFHSIMFPATLVAAGDQYTKVNHIMATGH----------KIGTPAPLFRKIE 143 (235)
Q Consensus 76 --~~~~~~W~~~~~~~~~~v~fiGkDi~~Fhai~wpa~L~~~~~~~~~p~~i~~~G~----------kiGn~~~~~~~i~ 143 (235)
++|.+||++ + ++++||||||||++||||+|||||++.|.+ +|+++++||| |.||++.+.+.++
T Consensus 275 ~~~~~~~~W~~--~-~~e~vhfIGKDii~FHav~wPamL~~~~~~--lP~~i~ahg~l~~~G~KmSKSrG~~V~~~~~~~ 349 (558)
T COG0143 275 DDEDFKKFWPA--D-DTELVHFIGKDIIRFHAVYWPAMLMAAGLP--LPTRIFAHGFLTLEGQKMSKSRGNVVDPDELLE 349 (558)
T ss_pred ChHHHHhhCCC--C-CceEEEEeccccCcchhhHHHHHHHhCCCC--CCCEEEeeeeEEECCccccccCCcEEeHHHHHH
Confidence 379999994 4 889999999999999999999999999976 9999999998 4677777889999
Q ss_pred hhhhHHHHHHhcCCCccccccCcccccccCCCHhHHHHHH--HHHHHhhhhHhhhhhhhhcccccccccccc
Q psy7269 144 QAQVDEWKLKYGGQQSKESSNNKKETKQAEITFSSVEELE--AAVATQGALLGTVDVIVMSSRTGAYAVTSE 213 (235)
Q Consensus 144 ~~~~d~lR~~f~G~~~~~l~~~~pe~~D~~fs~~~~~~~~--~lv~~~GNlV~R~~~~~~~~~~~~~~~~~~ 213 (235)
++++|.||| ++++..|+++|++||+++|.++. +|+|++||+++|+++|+.|+-.|..|..+.
T Consensus 350 ~~~~D~lRY--------yL~~~~p~~~D~dFs~~~f~~rvN~dL~n~lgNl~~R~~~fi~k~~~g~vp~~~~ 413 (558)
T COG0143 350 QYGVDALRY--------YLARELPEGSDGDFSWEDFVERVNADLANKLGNLANRTLGFINKYFDGVVPAAGA 413 (558)
T ss_pred HcCchHhHH--------HHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCCcccc
Confidence 999999998 55788899999999999999976 999999999999999999999999998873
No 2
>PLN02610 probable methionyl-tRNA synthetase
Probab=100.00 E-value=9.6e-50 Score=398.01 Aligned_cols=200 Identities=41% Similarity=0.791 Sum_probs=182.1
Q ss_pred ChHHHHHHHHhCC--CCCChhHHHHHHHHHhcCCCCccceeccCCccccCCCCCCCCeEEEeccCccchhhcccccchhh
Q psy7269 1 IEDKLQSWVSETS--DQWSSNARVICKAWLKDGLKPRCITRDLKWGIPVPLPGFENKVFYVWFDAPIGYMSLTQSYCGQY 78 (235)
Q Consensus 1 ~~~~L~e~~~~~~--~~~p~~~~~~~~~~l~~gL~Dw~ISR~~~WGIpvP~~~~~~~viyVWfDa~~~yls~~~~~~~~~ 78 (235)
|+++|++|+++++ +.|+++..+.+.+||++||+||||||+..||||||.+++++|||||||||++||+|++.+|.++|
T Consensus 212 ~~~~L~~~~~~~~~~~~~~~n~~~~~~~~l~~gL~d~~IsR~~~WGipvP~~~~~~~v~YVWfDAl~~Yis~~~~~~~~~ 291 (801)
T PLN02610 212 LKDKLVEYINETSVAGGWSQNAIQTTNAWLRDGLKPRCITRDLKWGVPVPLEKYKDKVFYVWFDAPIGYVSITACYTPEW 291 (801)
T ss_pred HHHHHHHHHHhCCCCCCcCHHHHHHHHHHHhCCCCCcceeeecCCcccCCCCCCCCcEEEEehhhHHHHHHHHhhhhhHH
Confidence 6899999998753 24899999999999999999999999999999999998899999999999999999988888889
Q ss_pred hhhcCCCCCCCceeEEEeecCCcchhhhHHHHHHHHhCCCcccceeeecccc----------ccCCCCChHHHHhh-hhh
Q psy7269 79 EAWWKSAPQSKITLYQFMAKDNVPFHSIMFPATLVAAGDQYTKVNHIMATGH----------KIGTPAPLFRKIEQ-AQV 147 (235)
Q Consensus 79 ~~~W~~~~~~~~~~v~fiGkDi~~Fhai~wpa~L~~~~~~~~~p~~i~~~G~----------kiGn~~~~~~~i~~-~~~ 147 (235)
++||++ +++++++||+||||++||+|+|||||+++|.+|++|++|++||| |+||++++.+.++. ||+
T Consensus 292 ~~~W~~--~~~~~~~hfiGKDi~~fH~i~wPa~L~a~g~~~~~p~~i~~~g~l~~eG~KMSKS~GNvV~p~~~i~~~yg~ 369 (801)
T PLN02610 292 EKWWKN--PENVELYQFMGKDNVPFHTVMFPSTLLGTGENWTMMKTISVTEYLNYEGGKFSKSKGVGVFGNDAKDTNIPV 369 (801)
T ss_pred HHhcCC--cccceEEEEEeeecchhHHHHHHHHHHhCCCCcCCCCEEEeccCEecCCceecCcCCcccCHHHHHhccCCc
Confidence 999983 34678999999999999999999999999998889999999998 57888899999996 999
Q ss_pred HHHHHHhcCCCccccccCcccccccCCCHhHHHHHH--HHHHHhhhhHhhhhhhhh----ccccccccc
Q psy7269 148 DEWKLKYGGQQSKESSNNKKETKQAEITFSSVEELE--AAVATQGALLGTVDVIVM----SSRTGAYAV 210 (235)
Q Consensus 148 d~lR~~f~G~~~~~l~~~~pe~~D~~fs~~~~~~~~--~lv~~~GNlV~R~~~~~~----~~~~~~~~~ 210 (235)
|.+|| ++++..|+++|++||+++|.++. +|+|++||||+|+++++. ++..|.+|.
T Consensus 370 D~lRy--------yLl~~~p~~~D~dFs~~~f~~~~NsdL~n~lGNlv~R~~~~i~~~~~k~~~g~vp~ 430 (801)
T PLN02610 370 EVWRY--------YLLTNRPEVSDTLFTWADLQAKLNSELLNNLGNFINRVLSFIAKPPGAGYGSVIPD 430 (801)
T ss_pred hHhHH--------HhhhcCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCcCCC
Confidence 99998 55778899999999999999976 999999999999999998 567787774
No 3
>KOG0436|consensus
Probab=100.00 E-value=1.9e-45 Score=336.88 Aligned_cols=178 Identities=26% Similarity=0.454 Sum_probs=160.7
Q ss_pred ChHHHHHHHHhCCCCC-ChhHHHHHHHHHhcCCCCcccee---ccCCccccCCCCCCCCeEEEeccCccchhhcccccch
Q psy7269 1 IEDKLQSWVSETSDQW-SSNARVICKAWLKDGLKPRCITR---DLKWGIPVPLPGFENKVFYVWFDAPIGYMSLTQSYCG 76 (235)
Q Consensus 1 ~~~~L~e~~~~~~~~~-p~~~~~~~~~~l~~gL~Dw~ISR---~~~WGIpvP~~~~~~~viyVWfDa~~~yls~~~~~~~ 76 (235)
||.+|.++++.||.+. |..-.+.+.+||+.||+|.+||| .++||||+|.| +.|+|||||||++||||+. +++.
T Consensus 209 fqk~l~d~lrkNP~fvqPs~~~~qVl~~lktglpDlSISRpsarl~WGIPvP~d--dsQtIYVWfDAL~nYiSvi-g~~~ 285 (578)
T KOG0436|consen 209 FQKPLEDHLRKNPRFVQPSYFHNQVLSWLKTGLPDLSISRPSARLDWGIPVPGD--DSQTIYVWFDALLNYISVI-GYPN 285 (578)
T ss_pred hhhHHHHHHhcCCCccCchHHHHHHHHHHHcCCCcccccChhhhcccCCCCCCC--CcceEEEeHHHHhhHHHhh-cCCc
Confidence 6899999999999874 66778999999999999999999 48899999987 8999999999999999986 6652
Q ss_pred -------hhhhhcCCCCCCCceeEEEeecCCcchhhhHHHHHHHHhCCCcccceeeecccc----------ccCCCCChH
Q psy7269 77 -------QYEAWWKSAPQSKITLYQFMAKDNVPFHSIMFPATLVAAGDQYTKVNHIMATGH----------KIGTPAPLF 139 (235)
Q Consensus 77 -------~~~~~W~~~~~~~~~~v~fiGkDi~~Fhai~wpa~L~~~~~~~~~p~~i~~~G~----------kiGn~~~~~ 139 (235)
...-.||+. .|+|||||++||||||||+||++|+| +|+.|++||| |+||+++|+
T Consensus 286 ~~~N~k~~ls~~wPat-------~HvIGKDIlrFHavYWPafLmaAGlp--lP~~I~vHghwt~ngmKMsKSLGNvvdP~ 356 (578)
T KOG0436|consen 286 KQQNLKTALSFGWPAT-------LHVIGKDILRFHAVYWPAFLMAAGLP--LPKMIFVHGHWTKNGMKMSKSLGNVVDPF 356 (578)
T ss_pred hhccccceeecCCCce-------eeehhhhhhhhhhhhhHHHHHhcCCC--CccEEEEeeeeeecceecchhhccccCHH
Confidence 355689953 89999999999999999999999976 8999999998 689999999
Q ss_pred HHHhhhhhHHHHHHhcCCCccccccCcccccccCCCHhHHHHHH--HHHHHhhhhHhhhhh
Q psy7269 140 RKIEQAQVDEWKLKYGGQQSKESSNNKKETKQAEITFSSVEELE--AAVATQGALLGTVDV 198 (235)
Q Consensus 140 ~~i~~~~~d~lR~~f~G~~~~~l~~~~pe~~D~~fs~~~~~~~~--~lv~~~GNlV~R~~~ 198 (235)
+.+++||+|.+|| ++.+++..+.|+||+.+.+.... +|++++|||+|||++
T Consensus 357 ~l~~kygvD~vRy--------flLr~~~l~~Dgdy~eekl~k~~n~~La~~lG~LlnRc~g 409 (578)
T KOG0436|consen 357 ELVQKYGVDAVRY--------FLLREGELGNDGDYSEEKLIKIVNAHLANTLGNLLNRCLG 409 (578)
T ss_pred HHHHHhCccceee--------EeeeccccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999998 55677777899999999998854 999999999999997
No 4
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.4e-44 Score=355.14 Aligned_cols=193 Identities=22% Similarity=0.406 Sum_probs=170.5
Q ss_pred ChHHHHHHHHhCCCC-CChhHHHHHH-HHHhcCCCCccceecc-CCccccCCCCCCCCeEEEeccCccchhhcccccc--
Q psy7269 1 IEDKLQSWVSETSDQ-WSSNARVICK-AWLKDGLKPRCITRDL-KWGIPVPLPGFENKVFYVWFDAPIGYMSLTQSYC-- 75 (235)
Q Consensus 1 ~~~~L~e~~~~~~~~-~p~~~~~~~~-~~l~~gL~Dw~ISR~~-~WGIpvP~~~~~~~viyVWfDa~~~yls~~~~~~-- 75 (235)
|+++|++|+++++.+ ||++.++.+. +||++||+|||||||+ +||||||.+ ++||+||||||+++|+|++ +|+
T Consensus 168 ~~~~l~~~~~~~~~~~~p~~~~~~~~~~~l~~~l~D~~ISR~~~~WGipvP~~--~~~v~yVWfDA~~~y~s~~-~~~~~ 244 (648)
T PRK12267 168 YQDRLLEYYEENPDFIQPESRKNEMINNFIKPGLEDLSISRTSFDWGIPVPFD--PKHVVYVWIDALLNYITAL-GYGSD 244 (648)
T ss_pred HHHHHHHHHhhCCcccCCHHHHHHHHHHHhhCCCCCcccCCCCCCcceECCCC--CCCEEEEcccchHHHHHHc-CCCCC
Confidence 689999999887654 6999999888 9999999999999985 799999976 7999999999999999997 775
Q ss_pred --hhhhhhcCCCCCCCceeEEEeecCCcchhhhHHHHHHHHhCCCcccceeeecccc----------ccCCCCChHHHHh
Q psy7269 76 --GQYEAWWKSAPQSKITLYQFMAKDNVPFHSIMFPATLVAAGDQYTKVNHIMATGH----------KIGTPAPLFRKIE 143 (235)
Q Consensus 76 --~~~~~~W~~~~~~~~~~v~fiGkDi~~Fhai~wpa~L~~~~~~~~~p~~i~~~G~----------kiGn~~~~~~~i~ 143 (235)
++|++|||++ +||+||||++||+++|||+|++.| +++|++|++||| |.||++.|.+.|+
T Consensus 245 ~~~~~~~~wp~~-------~~~~GkDii~fH~i~wpa~l~~~~--~~~p~~v~~hg~l~~eg~KMSKS~GN~i~p~d~l~ 315 (648)
T PRK12267 245 DDELFKKFWPAD-------VHLVGKDILRFHAIYWPIMLMALG--LPLPKKVFAHGWWLMKDGKMSKSKGNVVDPEELVD 315 (648)
T ss_pred CchHHHhhcccc-------eEEEeeeecchhHHHHHHHHHhCC--CCCCcEEEecceEEECCceecccCCcccCHHHHHH
Confidence 2588999953 999999999999999999999998 558999999998 5788889999999
Q ss_pred hhhhHHHHHHhcCCCccccccCcccccccCCCHhHHHHHH--HHHHHhhhhHhhhhhhhhcccccccccccc
Q psy7269 144 QAQVDEWKLKYGGQQSKESSNNKKETKQAEITFSSVEELE--AAVATQGALLGTVDVIVMSSRTGAYAVTSE 213 (235)
Q Consensus 144 ~~~~d~lR~~f~G~~~~~l~~~~pe~~D~~fs~~~~~~~~--~lv~~~GNlV~R~~~~~~~~~~~~~~~~~~ 213 (235)
+||+|.+|++ +++..|+++|++|+++++.++. ++++++||+++|+++++.++..|..|..++
T Consensus 316 ~ygaD~lR~~--------L~~~~~~~~D~~fs~~~~~~~~n~~l~~~lgNl~~R~~~~~~~~~~~~~p~~~~ 379 (648)
T PRK12267 316 RYGLDALRYY--------LLREVPFGSDGDFSPEALVERINSDLANDLGNLLNRTVAMINKYFDGEIPAPGN 379 (648)
T ss_pred HcCCcHHHHH--------HHhcCCCCCCCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcCCCCCC
Confidence 9999999983 4556788999999999998754 999999999999999998888887775433
No 5
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=100.00 E-value=9e-46 Score=344.58 Aligned_cols=183 Identities=31% Similarity=0.589 Sum_probs=149.9
Q ss_pred ChHHHHHHHHhCCCCCChhHHHHHHHHHhcCCCCccceeccCCccccCCCCCCCCeEEEeccCccchhhcccccc-----
Q psy7269 1 IEDKLQSWVSETSDQWSSNARVICKAWLKDGLKPRCITRDLKWGIPVPLPGFENKVFYVWFDAPIGYMSLTQSYC----- 75 (235)
Q Consensus 1 ~~~~L~e~~~~~~~~~p~~~~~~~~~~l~~gL~Dw~ISR~~~WGIpvP~~~~~~~viyVWfDa~~~yls~~~~~~----- 75 (235)
|+++|++|+++++.+||+++++.+.+||+++|+|+||||+.+||||+|.+ ++|||||||||+++|++++..+.
T Consensus 191 ~~~~L~~~l~~~~~~~~~~~~~~~~~~l~~~L~d~~Is~~~~WGI~vP~~--~~~~iyVWfdal~~Ylt~~~~~~~~~~~ 268 (391)
T PF09334_consen 191 FRDQLREWLESNPDFPPPRVREIVRNWLKEGLPDLSISRPLDWGIPVPGD--PGQVIYVWFDALIGYLTATGYLAEKRGD 268 (391)
T ss_dssp GHHHHHHHHHHSTTSSHHHHHHHHHHHHHT----EE-ECTTSSSEEETTE--EEEEE-HHHHHHTHHHHTTTTTHHHTTT
T ss_pred hHHHHHHHHhcCCCCCChhHHHHHHHHhhcccCceeeecCCCCcceeecc--CCceEEEcchHHHHHHHHhccccccccc
Confidence 68999999998876699999999999999999999999999999999954 89999999999999999986554
Q ss_pred -hhhhhhcCCCCCCCceeEEEeecCCcchhhhHHHHHHHHhCCCcccceeeecccc----------ccCCCCChHHHHhh
Q psy7269 76 -GQYEAWWKSAPQSKITLYQFMAKDNVPFHSIMFPATLVAAGDQYTKVNHIMATGH----------KIGTPAPLFRKIEQ 144 (235)
Q Consensus 76 -~~~~~~W~~~~~~~~~~v~fiGkDi~~Fhai~wpa~L~~~~~~~~~p~~i~~~G~----------kiGn~~~~~~~i~~ 144 (235)
++++++|+ .+++++++||+||||++||+|+|||||++.| +++|+++++||| |.||++.+.+.+++
T Consensus 269 ~~~~~~~w~--~~~~~~~v~~iGkDi~~fH~i~~pa~l~a~~--~~lP~~i~~~~~~~~~g~K~SkS~gn~i~~~~~~~~ 344 (391)
T PF09334_consen 269 PEEFKKWWA--NDSDVEIVHFIGKDIIRFHAIYWPAMLLAAG--LPLPRRIVVHGFLTLDGEKMSKSRGNVIWPDDLLEE 344 (391)
T ss_dssp SHHHHHHHC--ST--SEEEEEEEGGGHHHHHTHHHHHHHHCT--B---SEEEEE--EEETTCCEETTTTESSBHHHHHHH
T ss_pred cchhhhhcc--ccCCceEEEEEccchhHHHHHHhHHHHhccc--CCCCCEEEeeeeEEECCeeccccCCcccCHHHHHHh
Confidence 35889994 3678899999999999999999999999987 559999999998 46777788899999
Q ss_pred hhhHHHHHHhcCCCccccccCcccccccCCCHhHHHHHH--HHHHHhhhhHhhhh
Q psy7269 145 AQVDEWKLKYGGQQSKESSNNKKETKQAEITFSSVEELE--AAVATQGALLGTVD 197 (235)
Q Consensus 145 ~~~d~lR~~f~G~~~~~l~~~~pe~~D~~fs~~~~~~~~--~lv~~~GNlV~R~~ 197 (235)
+++|.+|+ ++++.+|+.+|++|++++|.+.. +|+|++||+|+|++
T Consensus 345 ~~~D~~R~--------~L~~~~~~~~d~~F~~~~~~~~~n~~L~~~~gNl~~R~~ 391 (391)
T PF09334_consen 345 YGADALRY--------YLAREGPEGQDSDFSWEDFIERVNNELANTLGNLVNRVL 391 (391)
T ss_dssp H-HHHHHH--------HHHHHSSTTS-EEE-HHHHHHHHHHCCCCCHHHHHHHHH
T ss_pred CChHHHHH--------HHHHhcCCCCCCCCCHHHHHHHHHHHHHHhhhhHHhccC
Confidence 99999998 55778899999999999998854 99999999999985
No 6
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=6.5e-44 Score=351.69 Aligned_cols=194 Identities=28% Similarity=0.549 Sum_probs=170.6
Q ss_pred ChHHHHHHHHhCCCCCChhHHHHHHHHHhcCCCCccceeccCC-ccccCCCCCCCCeEEEeccCccchhhcccccch---
Q psy7269 1 IEDKLQSWVSETSDQWSSNARVICKAWLKDGLKPRCITRDLKW-GIPVPLPGFENKVFYVWFDAPIGYMSLTQSYCG--- 76 (235)
Q Consensus 1 ~~~~L~e~~~~~~~~~p~~~~~~~~~~l~~gL~Dw~ISR~~~W-GIpvP~~~~~~~viyVWfDa~~~yls~~~~~~~--- 76 (235)
|+++|++|+++++ .||+++++.+.+||+++|+||||||+++| |||+|.+ ++|++||||||++||++++.+|++
T Consensus 194 ~~~~l~~~~~~~~-~~~~~~~~~~~~~l~~~l~d~~ISR~~~W~GipvP~~--~~~~iyVW~dal~~Yl~~~~~~~~~~~ 270 (673)
T PRK00133 194 FEEFLKEWITRSG-ELQPNVANKMKEWLEEGLQDWDISRDAPYFGFEIPGA--PGKVFYVWLDAPIGYISSTKNLCDKRG 270 (673)
T ss_pred HHHHHHHHHhcCC-CCCHHHHHHHHHHHhCCCcccceeeeCCccceECCCC--CCeEEEEcccchhhhhHHHhhhccccc
Confidence 5899999997654 49999999999999999999999999999 9999955 899999999999999999877743
Q ss_pred --hhhhhcCCCCCCCceeEEEeecCCcchhhhHHHHHHHHhCCCcccceeeecccc----------ccCCCCChHHHHhh
Q psy7269 77 --QYEAWWKSAPQSKITLYQFMAKDNVPFHSIMFPATLVAAGDQYTKVNHIMATGH----------KIGTPAPLFRKIEQ 144 (235)
Q Consensus 77 --~~~~~W~~~~~~~~~~v~fiGkDi~~Fhai~wpa~L~~~~~~~~~p~~i~~~G~----------kiGn~~~~~~~i~~ 144 (235)
+|++||++ +++++++||+||||++||+|+|||+|++.| +++|++|++||| |.||++.|.+.|++
T Consensus 271 ~~~~~~~w~~--~~~~~~v~~iGkDi~~fH~i~wpa~l~a~g--~~lP~~v~~hg~v~~~G~KMSKS~GNvV~p~dlie~ 346 (673)
T PRK00133 271 GLDWDEYWKK--DSDTELYHFIGKDIIYFHTLFWPAMLEGAG--YRLPTNVFAHGFLTVEGAKMSKSRGTFIWARTYLDH 346 (673)
T ss_pred chhHHHhcCC--CCCceEEEEEeecchhHHHHHHHHHHHhCC--CCCCCEEeeeccEEecCCcccccCCcccCHHHHHHH
Confidence 48899952 345788999999999999999999999988 458999999998 57999999999999
Q ss_pred hhhHHHHHHhcCCCccccccCcccc-cccCCCHhHHHHH--HHHHHHhhhhHhhhhhhhhcccccccc
Q psy7269 145 AQVDEWKLKYGGQQSKESSNNKKET-KQAEITFSSVEEL--EAAVATQGALLGTVDVIVMSSRTGAYA 209 (235)
Q Consensus 145 ~~~d~lR~~f~G~~~~~l~~~~pe~-~D~~fs~~~~~~~--~~lv~~~GNlV~R~~~~~~~~~~~~~~ 209 (235)
||+|++|++ +++..|++ +|.+|+++++... .++++++||+++|+.+++.++..|..|
T Consensus 347 ygaDalR~~--------ll~~~~~~~~D~~Fs~~~~~~~~n~~l~~~l~Nl~~R~~~~~~k~~~~~~~ 406 (673)
T PRK00133 347 LDPDYLRYY--------LAAKLPETIDDLDFNWEDFQQRVNSELVGKVVNFASRTAGFINKRFDGKLP 406 (673)
T ss_pred cCchHHHHH--------HHhcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 999999984 45677888 9999999998764 389999999999999998877666655
No 7
>PLN02224 methionine-tRNA ligase
Probab=100.00 E-value=6e-44 Score=347.85 Aligned_cols=192 Identities=22% Similarity=0.397 Sum_probs=166.6
Q ss_pred ChHHHHHHHHhCCCCC-ChhHHHHHHHHHhcCCCCccceecc-CCccccCCCCCCCCeEEEeccCccchhhcccccchh-
Q psy7269 1 IEDKLQSWVSETSDQW-SSNARVICKAWLKDGLKPRCITRDL-KWGIPVPLPGFENKVFYVWFDAPIGYMSLTQSYCGQ- 77 (235)
Q Consensus 1 ~~~~L~e~~~~~~~~~-p~~~~~~~~~~l~~gL~Dw~ISR~~-~WGIpvP~~~~~~~viyVWfDa~~~yls~~~~~~~~- 77 (235)
|+++|++|+++++.++ |+..++.+.+||++||+||||||+. +||||||.+ ++|||||||||++||+|++..+.++
T Consensus 233 ~~~~L~~~~~~~~~~~~p~~~~~~~~~~l~~gL~d~~ISR~~~~WGIpvP~~--~~~viYVWfDAl~~Yls~~~~~~~~~ 310 (616)
T PLN02224 233 YQKPLEDILAQNPRFVQPSYRLNEVQSWIKSGLRDFSISRALVDWGIPVPDD--DKQTIYVWFDALLGYISALTEDNKQQ 310 (616)
T ss_pred HHHHHHHHHHhCCCccCCHHHHHHHHHHHhcCCCCccccCCCCCCceECCCC--CCcEEEEehhhHHHHHHHhccccccc
Confidence 6899999998887654 7778899999999999999999985 899999977 8999999999999999988555421
Q ss_pred -----hhhhcCCCCCCCceeEEEeecCCcchhhhHHHHHHHHhCCCcccceeeecccc----------ccCCCCChHHHH
Q psy7269 78 -----YEAWWKSAPQSKITLYQFMAKDNVPFHSIMFPATLVAAGDQYTKVNHIMATGH----------KIGTPAPLFRKI 142 (235)
Q Consensus 78 -----~~~~W~~~~~~~~~~v~fiGkDi~~Fhai~wpa~L~~~~~~~~~p~~i~~~G~----------kiGn~~~~~~~i 142 (235)
+..+||. .+||+||||++||+++|||+|++.| +++|+++++||| |.||++.|.+.+
T Consensus 311 ~~~~~~~~~w~~-------~v~~iGKDii~fH~i~wpa~l~~~g--~~~P~~i~~~g~l~~eG~KMSKS~GN~i~p~e~l 381 (616)
T PLN02224 311 NLETAVSFGWPA-------SLHLIGKDILRFHAVYWPAMLMSAG--LELPKMVFGHGFLTKDGMKMGKSLGNTLEPFELV 381 (616)
T ss_pred ccchhhccCCCc-------ceEEEeecccccHHHHHHHHHHHCC--CCCCcEEEecccEecCCccccccCCccCCHHHHH
Confidence 2336773 2999999999999999999999988 558999999998 578889999999
Q ss_pred hhhhhHHHHHHhcCCCccccccCcccccccCCCHhHHHHHH--HHHHHhhhhHhhhhhhhhcccccccccc
Q psy7269 143 EQAQVDEWKLKYGGQQSKESSNNKKETKQAEITFSSVEELE--AAVATQGALLGTVDVIVMSSRTGAYAVT 211 (235)
Q Consensus 143 ~~~~~d~lR~~f~G~~~~~l~~~~pe~~D~~fs~~~~~~~~--~lv~~~GNlV~R~~~~~~~~~~~~~~~~ 211 (235)
++||+|.+|++ +++.+|+.+|++|+++++.+.. +|++++||+++|++.++.++..|..|..
T Consensus 382 ~~ygaD~~R~y--------Ll~~~p~~~d~~fs~~~~~~~~NseLan~lgNll~R~l~~~~k~~~~~~~~~ 444 (616)
T PLN02224 382 QKFGPDAVRYF--------FLREVEFGNDGDYSEDRFIKIVNAHLANTIGNLLNRTLGLLKKNCESTLVED 444 (616)
T ss_pred HHcCcHHHHHH--------HHhcCCCcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCCc
Confidence 99999999984 4556789999999999988754 8999999999999999998877766543
No 8
>KOG1247|consensus
Probab=100.00 E-value=2.2e-44 Score=329.43 Aligned_cols=201 Identities=39% Similarity=0.777 Sum_probs=182.1
Q ss_pred ChHHHHHHHHhCC--CCCChhHHHHHHHHHhcCCCCccceeccCCccccCCCCCCCCeEEEeccCccchhhcccccchhh
Q psy7269 1 IEDKLQSWVSETS--DQWSSNARVICKAWLKDGLKPRCITRDLKWGIPVPLPGFENKVFYVWFDAPIGYMSLTQSYCGQY 78 (235)
Q Consensus 1 ~~~~L~e~~~~~~--~~~p~~~~~~~~~~l~~gL~Dw~ISR~~~WGIpvP~~~~~~~viyVWfDa~~~yls~~~~~~~~~ 78 (235)
++++|+||++++. ..|.+++++..++||++||.++||||++.||+|||.++++++|+||||||+|||+|.++.|.++|
T Consensus 207 l~~~lee~~~~~~~~~~WS~Na~~it~sWlk~gl~pRCiTRDLkWGtpVPle~fk~KVfYVWFDA~IGYlsit~~yt~ew 286 (567)
T KOG1247|consen 207 LEPRLEEWLRRTLVEGDWSQNAQNITRSWLKDGLKPRCITRDLKWGTPVPLEKFKDKVFYVWFDAPIGYLSITKNYTDEW 286 (567)
T ss_pred hHHHHHHHHHhccccCCCccchHHHHHHHHHccccccccccccccCCCcChhhhcccEEEEEEcCcceEEEeehhhhHHH
Confidence 5789999998765 35999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCCCCceeEEEeecCCcchhhhHHHHHHHHhCCCcccceeeecccc------ccCCCCChHHHH-----hhhhh
Q psy7269 79 EAWWKSAPQSKITLYQFMAKDNVPFHSIMFPATLVAAGDQYTKVNHIMATGH------KIGTPAPLFRKI-----EQAQV 147 (235)
Q Consensus 79 ~~~W~~~~~~~~~~v~fiGkDi~~Fhai~wpa~L~~~~~~~~~p~~i~~~G~------kiGn~~~~~~~i-----~~~~~ 147 (235)
++||. ++++++++||+||||+.||++++|+++++.+..|++-+++.+.++ |+++|++.-..- -..++
T Consensus 287 ~kWwk--npE~v~LyqFmgKDNVpFHtviFP~s~lgt~en~t~v~~l~aTeYLnyE~gKFSKSrgvGvFG~~aqd~gi~~ 364 (567)
T KOG1247|consen 287 EKWWK--NPENVELYQFMGKDNVPFHTVIFPCSQLGTEENYTVVHHLSATEYLNYEDGKFSKSRGVGVFGNDAQDTGIPA 364 (567)
T ss_pred HHHhc--CHhhhhHHHHhccCCCcceeeecchhhhcCCCCchhheeechhhhhccccCcccccccccccccccccCCCCH
Confidence 99999 578899999999999999999999999999999998899999887 788887654332 33578
Q ss_pred HHHHHHhcCCCccccccCcccccccCCCHhHHHHHH--HHHHHhhhhHhhhhhhhhcccccccccc
Q psy7269 148 DEWKLKYGGQQSKESSNNKKETKQAEITFSSVEELE--AAVATQGALLGTVDVIVMSSRTGAYAVT 211 (235)
Q Consensus 148 d~lR~~f~G~~~~~l~~~~pe~~D~~fs~~~~~~~~--~lv~~~GNlV~R~~~~~~~~~~~~~~~~ 211 (235)
+.||| |++...||++|+.|||++|..+. ||++++||+|||+++++.+.=.|..|.-
T Consensus 365 ~vWRy--------YLl~~RPEssDs~Fsw~df~~k~nseLl~NLGNFvNR~l~fv~~~~~g~Vp~~ 422 (567)
T KOG1247|consen 365 SVWRY--------YLLYIRPESSDSAFSWDDFVLKVNSELLNNLGNFVNRVLKFVAAKYNGVVPEM 422 (567)
T ss_pred HHHHH--------HHhhccCcccCCcCcHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhCCcccce
Confidence 99997 67889999999999999999865 9999999999999999998888888754
No 9
>TIGR00398 metG methionyl-tRNA synthetase. The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma
Probab=100.00 E-value=3.6e-40 Score=316.77 Aligned_cols=194 Identities=30% Similarity=0.559 Sum_probs=169.1
Q ss_pred ChHHHHHHHHhCCC--CCChhHHHHHHHHHhcCCCCccceeccC-CccccCCCCCCCCeEEEeccCccchhhcccccc--
Q psy7269 1 IEDKLQSWVSETSD--QWSSNARVICKAWLKDGLKPRCITRDLK-WGIPVPLPGFENKVFYVWFDAPIGYMSLTQSYC-- 75 (235)
Q Consensus 1 ~~~~L~e~~~~~~~--~~p~~~~~~~~~~l~~gL~Dw~ISR~~~-WGIpvP~~~~~~~viyVWfDa~~~yls~~~~~~-- 75 (235)
|+++|++++++++. .||+++++++.+||+++|+|||||||+. ||||||.+ +++++||||||+++|++++ ++.
T Consensus 191 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~iSR~~~~WGipvP~~--~~~~~yvW~da~~~y~~~~-~~~~~ 267 (530)
T TIGR00398 191 FEKELEEWIRKNPESGSPASNVKNKAQNWLKGGLKDLAITRDLVYWGIPVPND--PNKVVYVWFDALIGYISSL-GILSG 267 (530)
T ss_pred HHHHHHHHHHhCCccCCCcHHHHHHHHHHHhCCCCCccccCcCCCCCeeCCCC--CCcEEEEeecchHHhHhhh-ccccC
Confidence 58999999987542 4789999999999998999999999999 99999987 7999999999999999976 442
Q ss_pred --hhhhhhcCCCCCCCceeEEEeecCCcchhhhHHHHHHHHhCCCcccceeeecccc----------ccCCCCChHHHHh
Q psy7269 76 --GQYEAWWKSAPQSKITLYQFMAKDNVPFHSIMFPATLVAAGDQYTKVNHIMATGH----------KIGTPAPLFRKIE 143 (235)
Q Consensus 76 --~~~~~~W~~~~~~~~~~v~fiGkDi~~Fhai~wpa~L~~~~~~~~~p~~i~~~G~----------kiGn~~~~~~~i~ 143 (235)
++++++||+ +.+++++||+||||++||+++|||+|++.| +++|+++++||| |.||++.|.+.|+
T Consensus 268 ~~~~~~~~w~~--~~~~~~v~~~G~Di~~~h~~~~~a~l~~~~--~~~~~~~~~~g~v~~~g~KmSKS~Gn~i~~~d~i~ 343 (530)
T TIGR00398 268 DTEDWKKWWNN--DEDAELIHFIGKDIVRFHTIYWPAMLMGLG--LPLPTQVFSHGYLTVEGGKMSKSLGNVVDPSDLLA 343 (530)
T ss_pred ChhhHHHhCCC--CCCceEEEEEecccchhHHHHHHHHHHhCC--CCCCCEEEeeccEEECCceecccCCceecHHHHHH
Confidence 358899995 456889999999999999999999999998 457999999998 5788899999999
Q ss_pred hhhhHHHHHHhcCCCccccccCcccccccCCCHhHHHHH--HHHHHHhhhhHhhhhhhhhcccccccc
Q psy7269 144 QAQVDEWKLKYGGQQSKESSNNKKETKQAEITFSSVEEL--EAAVATQGALLGTVDVIVMSSRTGAYA 209 (235)
Q Consensus 144 ~~~~d~lR~~f~G~~~~~l~~~~pe~~D~~fs~~~~~~~--~~lv~~~GNlV~R~~~~~~~~~~~~~~ 209 (235)
++|+|++|+.+ ++..|..+|.+|+++.+.+. .++++.+||+++|+++++.++..|..|
T Consensus 344 ~~g~D~lR~~l--------~~~~~~~~d~~f~~~~l~~~~n~~l~~~l~n~~~r~~~~~~~~~~~~~~ 403 (530)
T TIGR00398 344 RFGADILRYYL--------LKERPLGKDGDFSWEDFVERVNADLANKLGNLLNRTLGFIKKYFNGVLP 403 (530)
T ss_pred HcCchHHHHHH--------hhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCC
Confidence 99999999844 55567889999999999886 488999999999999998776555554
No 10
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=9.2e-39 Score=308.64 Aligned_cols=197 Identities=34% Similarity=0.673 Sum_probs=168.9
Q ss_pred ChHHHHHHHHhCCCCCChhHHHHHHHHHhcCCCCccceeccCCccccCCCCCCCCeEEEeccCccchhhcccccc-----
Q psy7269 1 IEDKLQSWVSETSDQWSSNARVICKAWLKDGLKPRCITRDLKWGIPVPLPGFENKVFYVWFDAPIGYMSLTQSYC----- 75 (235)
Q Consensus 1 ~~~~L~e~~~~~~~~~p~~~~~~~~~~l~~gL~Dw~ISR~~~WGIpvP~~~~~~~viyVWfDa~~~yls~~~~~~----- 75 (235)
|+++|++++++. ..||+++++++.+||+++++|||||||+.||||||.++.+++++|||||++++|+++...+.
T Consensus 196 ~~~~l~~~~~~~-~~~p~~~~~~~~~~l~~~l~Dw~ISR~~~WGipiP~~~~~~~~iyvW~da~~~y~~~~~~~~~~~g~ 274 (556)
T PRK12268 196 FAERLRAWIESS-GDWPPNVLNFTLNWLKEGLKPRAITRDLDWGIPVPWPGFEGKVFYVWFDAVIGYISASKEWAERTGD 274 (556)
T ss_pred HHHHHHHHHhhc-cCCCHHHHHHHHHHHhCCCCCcCceeeCCCCeeCCCCCCCCcEEEEeehHhhHHHHHHHHHHHhcCC
Confidence 578999999753 36999999999999987899999999999999999665689999999999999998754443
Q ss_pred -hhhhhhcCCCCCCCceeEEEeecCCcchhhhHHHHHHHHhCCCcccceeeecccc----------ccCCCCChHHHHhh
Q psy7269 76 -GQYEAWWKSAPQSKITLYQFMAKDNVPFHSIMFPATLVAAGDQYTKVNHIMATGH----------KIGTPAPLFRKIEQ 144 (235)
Q Consensus 76 -~~~~~~W~~~~~~~~~~v~fiGkDi~~Fhai~wpa~L~~~~~~~~~p~~i~~~G~----------kiGn~~~~~~~i~~ 144 (235)
+++.++|. +++++.+||+|+||++||+++||+++++.|.++++|+++++||| |.||++.|.+.|++
T Consensus 275 ~~~~~~~w~---ds~~~~~~~~G~D~~~Fh~~~~p~~l~~~~~~~~~P~~v~~~G~v~~~G~KMSKS~GN~I~p~dli~~ 351 (556)
T PRK12268 275 PEAWKEFWL---DPETKSYYFIGKDNIPFHSIIWPAMLLGSGEPLKLPDEIVSSEYLTLEGGKFSKSRGWGIWVDDALER 351 (556)
T ss_pred chHHHHHhC---CCCCeEEEEEeeccCcchHHHHHHHHHhcCCCCCCCCEeeccCCEEECCeeeccCCCcccCHHHHHHH
Confidence 25778995 45566799999999999999999999999977778999999998 57899999999999
Q ss_pred hhhHHHHHHhcCCCccccccCcccccccCCCHhHHHHHH--HHHHHhhhhHhhhhhhhhcccccccc
Q psy7269 145 AQVDEWKLKYGGQQSKESSNNKKETKQAEITFSSVEELE--AAVATQGALLGTVDVIVMSSRTGAYA 209 (235)
Q Consensus 145 ~~~d~lR~~f~G~~~~~l~~~~pe~~D~~fs~~~~~~~~--~lv~~~GNlV~R~~~~~~~~~~~~~~ 209 (235)
||+|++|+++ ++.+|.++|.+|+++++.... ++++.++|+++|+..++.++..+..|
T Consensus 352 yGaDalR~~l--------l~~~~~~~d~~f~~~~~~~~~~~~~~~~l~n~~~r~~~~~~~~~~~~~~ 410 (556)
T PRK12268 352 YPPDYLRYYL--------AANAPENSDTDFTWEEFVRRVNSELADKYGNLVNRVLSFIEKYFGGIVP 410 (556)
T ss_pred cCcHHHHHHH--------HhcCCCCCCCCCCHHHHHHHHhHHhhhhHHHHHHHHHHHHHHhcCCcCC
Confidence 9999999844 455678899999999987643 78999999999999998776655544
No 11
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=100.00 E-value=2.3e-36 Score=274.20 Aligned_cols=159 Identities=40% Similarity=0.723 Sum_probs=135.2
Q ss_pred ChHHHHHHHHhCCC-CCChhHHHHHHHHHhcCCCCccceecc-CCccccCCCCCCCCeEEEeccCccchhhcccccchhh
Q psy7269 1 IEDKLQSWVSETSD-QWSSNARVICKAWLKDGLKPRCITRDL-KWGIPVPLPGFENKVFYVWFDAPIGYMSLTQSYCGQY 78 (235)
Q Consensus 1 ~~~~L~e~~~~~~~-~~p~~~~~~~~~~l~~gL~Dw~ISR~~-~WGIpvP~~~~~~~viyVWfDa~~~yls~~~~~~~~~ 78 (235)
|+++|++++++++. .||+++++.+.+||+++|+|||||||. +||||+|.+ +++++||||||+++|++++..+.+..
T Consensus 147 ~~~~l~~~~~~~~~~~~p~~~~~~~~~~l~~~l~d~~isR~~~~WGipvp~~--~~~~~yvWfda~~~y~~~~~~~~~~~ 224 (319)
T cd00814 147 FQDRLLEWLEKNPDFIWPENARNEVLSWLKEGLKDLSITRDLFDWGIPVPLD--PGKVIYVWFDALIGYISATGYYNEEW 224 (319)
T ss_pred HHHHHHHHHHhCCccCCCHHHHHHHHHHHhCCCcccCCCccCcccCeeCCCC--CCcEEEEehhhHHHHHHHcccccccc
Confidence 57899999988764 599999999999999999999999999 999999986 89999999999999999874443221
Q ss_pred h--hhcCCCCCCCceeEEEeecCCcchhhhHHHHHHHHhCCCcccceeeecccc----------ccCCCCChHHHHhhhh
Q psy7269 79 E--AWWKSAPQSKITLYQFMAKDNVPFHSIMFPATLVAAGDQYTKVNHIMATGH----------KIGTPAPLFRKIEQAQ 146 (235)
Q Consensus 79 ~--~~W~~~~~~~~~~v~fiGkDi~~Fhai~wpa~L~~~~~~~~~p~~i~~~G~----------kiGn~~~~~~~i~~~~ 146 (235)
. .+|. +...+.+||+||||++||+++|||+|++.| +++|+.+++||| |.||++.+.+.+++++
T Consensus 225 ~~~~~~~---~~~~~~v~~~G~D~~~fh~~~~pa~l~~~~--~~~~~~~~~~~~~~~~g~kmSkS~gn~i~~~~~l~~~~ 299 (319)
T cd00814 225 GNSWWWK---DGWPELVHFIGKDIIRFHAIYWPAMLLGAG--LPLPTRIVAHGYLTVEGKKMSKSRGNVVDPDDLLERYG 299 (319)
T ss_pred cchhhhh---cCCCceEEEEeechhhhhHHHHHHHHHhCC--CCCCcEeeeeeeEEECCeeecccCCcccCHHHHHHHcC
Confidence 1 2343 123356999999999999999999999988 568999999998 5788888999999999
Q ss_pred hHHHHHHhcCCCccccccCcccccccCC
Q psy7269 147 VDEWKLKYGGQQSKESSNNKKETKQAEI 174 (235)
Q Consensus 147 ~d~lR~~f~G~~~~~l~~~~pe~~D~~f 174 (235)
+|.+|+ +++..+|+++|++|
T Consensus 300 ~d~~R~--------~l~~~~~~~~d~~f 319 (319)
T cd00814 300 ADALRY--------YLLRERPEGKDSDF 319 (319)
T ss_pred chHHHH--------HHHhcCCCCCCCCC
Confidence 999998 44677889999886
No 12
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=2.8e-35 Score=281.07 Aligned_cols=190 Identities=24% Similarity=0.436 Sum_probs=162.5
Q ss_pred ChHHHHHHHHhCCCC-CChhHHHHHHHHHhcCCCCcccee-ccCCccccCCCCCCCCeEEEeccCccchhhcccccc---
Q psy7269 1 IEDKLQSWVSETSDQ-WSSNARVICKAWLKDGLKPRCITR-DLKWGIPVPLPGFENKVFYVWFDAPIGYMSLTQSYC--- 75 (235)
Q Consensus 1 ~~~~L~e~~~~~~~~-~p~~~~~~~~~~l~~gL~Dw~ISR-~~~WGIpvP~~~~~~~viyVWfDa~~~yls~~~~~~--- 75 (235)
|+++|.++++++... +|+..++++.+||+++++|||||| +++||||+|.+ ++|++||||||+++|++.. +++
T Consensus 166 ~~~~l~~~~~~~~~~~~p~~~~~~~~~~l~~~~~D~~isR~~~~WGipiP~~--~~~~~~vWfda~~~y~s~~-~~p~~~ 242 (511)
T PRK11893 166 YQDKLLELYEANPDFIQPASRRNEVISFVKSGLKDLSISRTNFDWGIPVPGD--PKHVIYVWFDALTNYLTAL-GYPDDE 242 (511)
T ss_pred HHHHHHHHHHhCCCccCCHHHHHHHHHHHHCCCCCcccCCCCCCCCccCCCC--CCceEEEEecCcHHHHhHh-cccccc
Confidence 468999999875443 588899999999998999999999 99999999976 7999999999999999986 543
Q ss_pred ----hhhhhhcCCCCCCCceeEEEeecCCcchhhhHHHHHHHHhCCCcccceeeecccc----------ccCCCCChHHH
Q psy7269 76 ----GQYEAWWKSAPQSKITLYQFMAKDNVPFHSIMFPATLVAAGDQYTKVNHIMATGH----------KIGTPAPLFRK 141 (235)
Q Consensus 76 ----~~~~~~W~~~~~~~~~~v~fiGkDi~~Fhai~wpa~L~~~~~~~~~p~~i~~~G~----------kiGn~~~~~~~ 141 (235)
+++.++||.| +|++|+||++||+++|||++++.+ .++|+++++||| |.||++.+.+.
T Consensus 243 ~~~~~~~~~~~~~D-------~~~~G~D~~~~h~~~~~a~~~a~~--~~~p~~~~~~g~v~~~G~KMSKS~GN~i~~~dl 313 (511)
T PRK11893 243 ELLAELFNKYWPAD-------VHLIGKDILRFHAVYWPAFLMAAG--LPLPKRVFAHGFLTLDGEKMSKSLGNVIDPFDL 313 (511)
T ss_pred ccchhHHHhcCCCc-------ceEecccccccchhHHHHHHHhCC--CCCCCEEEeeccEEECCeeecccCCcEEcHHHH
Confidence 2478899853 799999999999999999999986 458899999998 56888889999
Q ss_pred HhhhhhHHHHHHhcCCCccccccCcccccccCCCHhHHHHH--HHHHHHhhhhHhhhhhhhhccccccccc
Q psy7269 142 IEQAQVDEWKLKYGGQQSKESSNNKKETKQAEITFSSVEEL--EAAVATQGALLGTVDVIVMSSRTGAYAV 210 (235)
Q Consensus 142 i~~~~~d~lR~~f~G~~~~~l~~~~pe~~D~~fs~~~~~~~--~~lv~~~GNlV~R~~~~~~~~~~~~~~~ 210 (235)
|+++|+|++|+++ ++..|+.+|.+|+++.+.+. .++++.+||+++|+.+++.+...+..|.
T Consensus 314 l~~~g~DalR~~l--------l~~~~~~~d~~Fs~~~~~~~~~~~l~~~l~n~~~r~~~~~~~~~~~~~~~ 376 (511)
T PRK11893 314 VDEYGVDAVRYFL--------LREIPFGQDGDFSREAFINRINADLANDLGNLAQRTLSMIAKNFDGKVPE 376 (511)
T ss_pred HHHcCcHHHHHHH--------HhcCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 9999999999844 45567889999999999763 3889999999999999987664454443
No 13
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=100.00 E-value=4.6e-33 Score=285.34 Aligned_cols=179 Identities=14% Similarity=0.217 Sum_probs=150.7
Q ss_pred ChHHHHHHHHhCCC-CCChhHHHHHHHHHhcCCCCccceeccCCccccCCC----C---------------------CCC
Q psy7269 1 IEDKLQSWVSETSD-QWSSNARVICKAWLKDGLKPRCITRDLKWGIPVPLP----G---------------------FEN 54 (235)
Q Consensus 1 ~~~~L~e~~~~~~~-~~p~~~~~~~~~~l~~gL~Dw~ISR~~~WGIpvP~~----~---------------------~~~ 54 (235)
|++++++++++++. ++|++.++++.+||+ +|+|||||||++||+|||.. + -++
T Consensus 382 ~k~~~~~~v~~~~~~~~P~~~~~~~~~wl~-~l~DW~ISRqr~WG~PIP~w~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 460 (1052)
T PRK14900 382 LARPAIEAVEQGRTRFIPEQWTNTYMAWMR-NIHDWCISRQLWWGHQIPAWYCPDGHVTVARETPEACSTCGKAELRQDE 460 (1052)
T ss_pred HHHHHHHHHhcCCcEEEChHHHHHHHHHHh-cCccceEEeecCCCceeCeEEcCCCcEEecccccccccccCccceecCC
Confidence 47889999976544 479999999999997 69999999999999999973 1 146
Q ss_pred CeEEEeccCccchhhcccccch---hhhhhcCCCCCCCceeEEEeecCCcchhhhHHHHHHHHhCCC--cccc-eeeecc
Q psy7269 55 KVFYVWFDAPIGYMSLTQSYCG---QYEAWWKSAPQSKITLYQFMAKDNVPFHSIMFPATLVAAGDQ--YTKV-NHIMAT 128 (235)
Q Consensus 55 ~viyVWfDa~~~yls~~~~~~~---~~~~~W~~~~~~~~~~v~fiGkDi~~Fhai~wpa~L~~~~~~--~~~p-~~i~~~ 128 (235)
+|+||||||+++|++.. +|++ ++.+|||+| +|++|+||++| |+++|++.++. ..+| ++|++|
T Consensus 461 dVlDvWFdS~l~y~s~~-g~p~~~~~~~~~~P~d-------~~~~G~Dii~~----W~a~~l~~~~~~~~~~Pfk~V~~h 528 (1052)
T PRK14900 461 DVLDTWFSSGLWPFSTM-GWPEQTDTLRTFYPTS-------VMETGHDIIFF----WVARMMMMGLHFMGEVPFRTVYLH 528 (1052)
T ss_pred ceEEEEEcCChHHHHHH-cCCCchHHHHhhCCch-------hhcccccHHhH----HHHHHHHHHHHhcCCCccceeEec
Confidence 99999999999999876 7864 477899953 89999999988 99999887752 2345 899999
Q ss_pred cc-----------ccCCCCChHHHHhhhhhHHHHHHhcCCCccccccCcccccccCCCHhHHHHHHHHHHHhhhhHhhhh
Q psy7269 129 GH-----------KIGTPAPLFRKIEQAQVDEWKLKYGGQQSKESSNNKKETKQAEITFSSVEELEAAVATQGALLGTVD 197 (235)
Q Consensus 129 G~-----------kiGn~~~~~~~i~~~~~d~lR~~f~G~~~~~l~~~~pe~~D~~fs~~~~~~~~~lv~~~GNlV~R~~ 197 (235)
|| |+||+++|.+.|++||+|.+|++ ++...+.++|.+|+++.+....++++++|| ++|++
T Consensus 529 G~v~d~~G~KMSKSkGNvIdP~dvIe~yGaDalR~~--------L~~~~~~g~D~~fs~~~l~~~~~f~nkl~N-~~R~~ 599 (1052)
T PRK14900 529 PMVRDEKGQKMSKTKGNVIDPLVITEQYGADALRFT--------LAALTAQGRDIKLAKERIEGYRAFANKLWN-ASRFA 599 (1052)
T ss_pred ccEECCCCCCccCCCCCCCCHHHHHHHhCcHHHHHH--------HHhcCCCCCCCcccHHHHHHHHHHHHHHHH-HHHHH
Confidence 97 68999999999999999999984 455667889999999999777799999999 78887
Q ss_pred hhhh
Q psy7269 198 VIVM 201 (235)
Q Consensus 198 ~~~~ 201 (235)
.+..
T Consensus 600 ~~~~ 603 (1052)
T PRK14900 600 LMNL 603 (1052)
T ss_pred HHhh
Confidence 6543
No 14
>TIGR00422 valS valyl-tRNA synthetase. The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.
Probab=99.97 E-value=2.2e-31 Score=268.95 Aligned_cols=181 Identities=16% Similarity=0.254 Sum_probs=150.9
Q ss_pred ChHHHHHHHHhCCC-CCChhHHHHHHHHHhcCCCCccceeccCCccccCC---C--CC----------------------
Q psy7269 1 IEDKLQSWVSETSD-QWSSNARVICKAWLKDGLKPRCITRDLKWGIPVPL---P--GF---------------------- 52 (235)
Q Consensus 1 ~~~~L~e~~~~~~~-~~p~~~~~~~~~~l~~gL~Dw~ISR~~~WGIpvP~---~--~~---------------------- 52 (235)
+++++.+++++++. ++|+++++++.+||+ +|+|||||||++||+|||. + +.
T Consensus 365 ~~~~~~~~~~~~~i~~~P~~~~~~~~~wl~-~l~DW~ISRq~~WG~piP~w~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 443 (861)
T TIGR00422 365 LADKALEAAEEGEIKFVPKRMEKRYLNWLR-NIKDWCISRQLIWGHRIPVWYCKECGEVYVAKEEPLPDDKTNTGPSVEL 443 (861)
T ss_pred HHHHHHHHhhcCCeEEEChHHHHHHHHHHh-ccccceeeeecccCCcceEEEECCCCcEEeccchHHhhhhhccCCcccE
Confidence 46788999975543 369999999999997 5999999999999999997 2 10
Q ss_pred --CCCeEEEeccCccchhhcccccch---hhhhhcCCCCCCCceeEEEeecCCcchhhhHHHHHHHHhCCCcccceeeec
Q psy7269 53 --ENKVFYVWFDAPIGYMSLTQSYCG---QYEAWWKSAPQSKITLYQFMAKDNVPFHSIMFPATLVAAGDQYTKVNHIMA 127 (235)
Q Consensus 53 --~~~viyVWfDa~~~yls~~~~~~~---~~~~~W~~~~~~~~~~v~fiGkDi~~Fhai~wpa~L~~~~~~~~~p~~i~~ 127 (235)
+.+|+||||||+++|+++. +|++ +++.|||+| +|++|+||++||..+|+++.++.... .+++++++
T Consensus 444 ~~~~dVlDtWFdS~l~~~s~~-g~p~~~~~~~~~~P~d-------~~~~G~Dii~fw~~~~~~~~~~~~~~-~Pfk~v~~ 514 (861)
T TIGR00422 444 EQDTDVLDTWFSSSLWPFSTL-GWPDETKDLKKFYPTD-------LLVTGYDIIFFWVARMIFRSLALTGQ-VPFKEVYI 514 (861)
T ss_pred EECCCcccceeccchHHHHHh-CCCCChHHHhhcCCcc-------eeecchhhhhHHHHHHHHHHHHhcCC-CchheEEE
Confidence 2579999999999999985 7863 578899953 89999999999999999988876532 23489999
Q ss_pred ccc-----------ccCCCCChHHHHhhhhhHHHHHHhcCCCccccccCcccccccCCCHhHHHHHHHHHHHhhhhHhhh
Q psy7269 128 TGH-----------KIGTPAPLFRKIEQAQVDEWKLKYGGQQSKESSNNKKETKQAEITFSSVEELEAAVATQGALLGTV 196 (235)
Q Consensus 128 ~G~-----------kiGn~~~~~~~i~~~~~d~lR~~f~G~~~~~l~~~~pe~~D~~fs~~~~~~~~~lv~~~GNlV~R~ 196 (235)
||+ |.||+++|.+.|++||+|++|+.+ +...+.++|.+|+++.+.+...+++++|| +.|.
T Consensus 515 hG~v~d~~G~KMSKS~GN~i~p~~~i~~ygaDalR~~l--------~~~~~~~~d~~f~~~~~~~~~~~~nkl~N-~~rf 585 (861)
T TIGR00422 515 HGLVRDEQGRKMSKSLGNVIDPLDVIEKYGADALRFTL--------ASLVTPGDDINFDWKRVESARNFLNKLWN-ASRF 585 (861)
T ss_pred eeEEECCCCCCCCcCCCCCCCHHHHHHHhChHHHHHHH--------HhCCCCCCCceecHHHHHHHHHHHHHHHH-HHHH
Confidence 997 578999999999999999999844 44556789999999999887789999999 7777
Q ss_pred hhhh
Q psy7269 197 DVIV 200 (235)
Q Consensus 197 ~~~~ 200 (235)
+.+.
T Consensus 586 ~~~~ 589 (861)
T TIGR00422 586 VLMN 589 (861)
T ss_pred HHhc
Confidence 7654
No 15
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases. Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=99.97 E-value=9e-31 Score=243.19 Aligned_cols=155 Identities=15% Similarity=0.293 Sum_probs=129.0
Q ss_pred ChHHHHHHHHhCCC-CCChhHHHHHHHHHhcCCCCccceeccCCccccCC----C-C-----------------------
Q psy7269 1 IEDKLQSWVSETSD-QWSSNARVICKAWLKDGLKPRCITRDLKWGIPVPL----P-G----------------------- 51 (235)
Q Consensus 1 ~~~~L~e~~~~~~~-~~p~~~~~~~~~~l~~gL~Dw~ISR~~~WGIpvP~----~-~----------------------- 51 (235)
|+++|++++++++. .+|+++++++.+||++ |+|||||||+.||||||+ + +
T Consensus 178 ~~~~l~~~~~~~~~~~~P~~~~~~~~~~l~~-l~Dw~ISR~~~WGipvP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (382)
T cd00817 178 LAKKALEAVKEGDIKFVPERMEKRYENWLEN-IRDWCISRQLWWGHRIPAWYCKDGGHWVVAREEDEAIDKAAPEACVPC 256 (382)
T ss_pred HHHHHHHHHhcCCcEEEChHHHHHHHHHHhh-CccceeeeccccCCccceEEeCCCCcEEecchhHHHHHHhccccccCC
Confidence 57899999988654 3699999999999986 999999999999999997 2 0
Q ss_pred ------CCCCeEEEeccCccchhhcccccch---hhhhhcCCCCCCCceeEEEeecCCcchhhhHHHHHHHHhCCCcccc
Q psy7269 52 ------FENKVFYVWFDAPIGYMSLTQSYCG---QYEAWWKSAPQSKITLYQFMAKDNVPFHSIMFPATLVAAGDQYTKV 122 (235)
Q Consensus 52 ------~~~~viyVWfDa~~~yls~~~~~~~---~~~~~W~~~~~~~~~~v~fiGkDi~~Fhai~wpa~L~~~~~~~~~p 122 (235)
-+++|+||||||+++|++++ ++++ ++.++||+| +|++|+||++||.+++.++.++... .+|
T Consensus 257 ~~~~~~~~~~v~dvWfds~~~~~~~~-~~~~~~~~~~~~~p~d-------~~~~G~D~~~~h~~~~l~~~~~~~g--~~p 326 (382)
T cd00817 257 GGEELKQDEDVLDTWFSSSLWPFSTL-GWPEETKDLKKFYPTS-------LLVTGHDIIFFWVARMIMRGLKLTG--KLP 326 (382)
T ss_pred CccCeeECCceeeeeecCCCcHHHHh-CCCCcchhHhhcCCCC-------eeeeecCcCchHHHHHHHHHHHhhC--CCc
Confidence 04899999999999999986 6653 578899964 9999999999999999888776642 234
Q ss_pred -eeeecccc-----------ccCCCCChHHHHhhhhhHHHHHHhcCCCccccccCcccccccCC
Q psy7269 123 -NHIMATGH-----------KIGTPAPLFRKIEQAQVDEWKLKYGGQQSKESSNNKKETKQAEI 174 (235)
Q Consensus 123 -~~i~~~G~-----------kiGn~~~~~~~i~~~~~d~lR~~f~G~~~~~l~~~~pe~~D~~f 174 (235)
+++++||+ |.||++.|.+.++++|+|++|+.+ ++..+.++|++|
T Consensus 327 ~~~v~~hg~v~~~~g~KMSKS~Gn~v~~~dll~~~g~Da~R~~l--------l~~~~~~~D~~f 382 (382)
T cd00817 327 FKEVYLHGLVRDEDGRKMSKSLGNVIDPLDVIDGYGADALRFTL--------ASAATQGRDINL 382 (382)
T ss_pred hHHeEeeeeEECCCCCCccccCCCCCCHHHHHHhcCcHHHHHHH--------HhCCCccCCCCC
Confidence 78888876 478999999999999999999844 455667788765
No 16
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases. Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=99.97 E-value=1.4e-30 Score=238.36 Aligned_cols=153 Identities=18% Similarity=0.317 Sum_probs=125.8
Q ss_pred ChHHHHHHHHhCCCCCChhHHHHHHHHHhcCCCCccceeccCCccccCCCC--CC--------CCeEEEeccCccchhhc
Q psy7269 1 IEDKLQSWVSETSDQWSSNARVICKAWLKDGLKPRCITRDLKWGIPVPLPG--FE--------NKVFYVWFDAPIGYMSL 70 (235)
Q Consensus 1 ~~~~L~e~~~~~~~~~p~~~~~~~~~~l~~gL~Dw~ISR~~~WGIpvP~~~--~~--------~~viyVWfDa~~~yls~ 70 (235)
++++|++++++.. ++|+++++++.+||+ +|+|||||||+.||||+|... .+ ++|+||||||+++|+++
T Consensus 160 ~~~~l~~~~~~~~-~~P~~~~~~~~~~l~-~l~dw~iSR~~~WGip~P~~~~~~~~~~~~~~~~~v~~vWfda~~~~~~~ 237 (338)
T cd00818 160 IKDRLLEANDKVN-WIPEWVKNRFGNWLE-NRRDWCISRQRYWGTPIPVWYCEDCGEVLVRRVPDVLDVWFDSGSMPYAQ 237 (338)
T ss_pred HHHHHHHHHhcCc-EECHHHHHHHHHHHh-cchhcceeeecccCceeeEEEecCCCeEEEecCCceEEEEEeCCCCHHHH
Confidence 4789999997643 469999999999996 599999999999999999721 12 88999999999999987
Q ss_pred ccccc---hhhhhhcCCCCCCCceeEEEeecCCcc--hhhhHHHHHHHHhCCCcccceeeecccc-----------ccCC
Q psy7269 71 TQSYC---GQYEAWWKSAPQSKITLYQFMAKDNVP--FHSIMFPATLVAAGDQYTKVNHIMATGH-----------KIGT 134 (235)
Q Consensus 71 ~~~~~---~~~~~~W~~~~~~~~~~v~fiGkDi~~--Fhai~wpa~L~~~~~~~~~p~~i~~~G~-----------kiGn 134 (235)
. +++ ++++++||++ ++++||||++ ||+++||++++... .+|+++++||+ |.||
T Consensus 238 ~-~~~~~~~~~~~~~p~d-------~~~~GkDii~~wf~~~~~~~~~~~~~---~p~~~~~~hg~~~~~~g~KmSKS~gn 306 (338)
T cd00818 238 L-HYPFENEDFEELFPAD-------FILEGSDQTRGWFYSLLLLSTALFGK---APYKNVIVHGFVLDEDGRKMSKSLGN 306 (338)
T ss_pred c-CCCCcchhhhccCCCe-------EEeecchHHhHHHHHHHHHHHHhcCC---CccceEEEEeeEECCCCCCCCCCCCC
Confidence 6 665 3578889953 8999999996 99999999985432 35689999987 5788
Q ss_pred CCChHHHHhhhhhHHHHHHhcCCCccccccCcccccccCC
Q psy7269 135 PAPLFRKIEQAQVDEWKLKYGGQQSKESSNNKKETKQAEI 174 (235)
Q Consensus 135 ~~~~~~~i~~~~~d~lR~~f~G~~~~~l~~~~pe~~D~~f 174 (235)
++.+.+.++++++|++|+++ +...|.++|..|
T Consensus 307 ~i~~~~~~~~~~~D~~R~~l--------~~~~~~~~d~~~ 338 (338)
T cd00818 307 YVDPQEVVDKYGADALRLWV--------ASSDVYAEDLRF 338 (338)
T ss_pred cCCHHHHHHHcCcHHHHHHH--------HhCCCccCCCCC
Confidence 88999999999999999854 455667777654
No 17
>PLN02943 aminoacyl-tRNA ligase
Probab=99.96 E-value=2e-29 Score=256.69 Aligned_cols=176 Identities=16% Similarity=0.241 Sum_probs=145.3
Q ss_pred ChHHHHHHHHhCCC-CCChhHHHHHHHHHhcCCCCccceeccCCccccCCC-------C---------------------
Q psy7269 1 IEDKLQSWVSETSD-QWSSNARVICKAWLKDGLKPRCITRDLKWGIPVPLP-------G--------------------- 51 (235)
Q Consensus 1 ~~~~L~e~~~~~~~-~~p~~~~~~~~~~l~~gL~Dw~ISR~~~WGIpvP~~-------~--------------------- 51 (235)
+++++.+++++.+. ++|+++++++.+||+ +|+|||||||++||+|||.. +
T Consensus 417 l~~~~l~~v~~~~i~~~P~~~~~~~~~wl~-~l~DWcISRQr~WG~pIP~w~~~~~~~~~~~~v~~~~~~~~~~~~~~~g 495 (958)
T PLN02943 417 LAEKALKAVENGELTIIPERFEKIYNHWLS-NIKDWCISRQLWWGHRIPVWYIVGKDCEEDYIVARSAEEALEKAREKYG 495 (958)
T ss_pred HHHHHHHHHhcCCcEEEChHHHHHHHHHHh-cCccceEEEecCCCCccCceeccccCCCceEEecCcHHHHHHHhhhhcC
Confidence 46788888875543 479999999999996 79999999999999999971 1
Q ss_pred ------CCCCeEEEeccCccchhhcccccch----hhhhhcCCCCCCCceeEEEeecCCcchhhhHHHHHHHHhCCC--c
Q psy7269 52 ------FENKVFYVWFDAPIGYMSLTQSYCG----QYEAWWKSAPQSKITLYQFMAKDNVPFHSIMFPATLVAAGDQ--Y 119 (235)
Q Consensus 52 ------~~~~viyVWfDa~~~yls~~~~~~~----~~~~~W~~~~~~~~~~v~fiGkDi~~Fhai~wpa~L~~~~~~--~ 119 (235)
-+++|+||||||+++|++++ +|++ +++.|||+| ++++|+||++| |++.+++.|.. .
T Consensus 496 ~~~~~~~~~DVlDtWFdS~l~p~s~l-gwp~~~~~~~~~~yP~d-------l~~~G~Dii~f----W~a~m~~~~~~~~~ 563 (958)
T PLN02943 496 KDVEIYQDPDVLDTWFSSALWPFSTL-GWPDVSAEDFKKFYPTT-------VLETGHDILFF----WVARMVMMGIEFTG 563 (958)
T ss_pred CchheeecCceEEEEEcCccchHHhc-CCCccChHHHhccCCCe-------EEEEeehHHHH----HHHHHHHhhhhhcC
Confidence 14699999999999999986 7853 577889954 89999999988 99988777753 2
Q ss_pred ccc-eeeecccc-----------ccCCCCChHHHHhhhhhHHHHHHhcCCCccccccCcccccccCCCHhHHHHHHHHHH
Q psy7269 120 TKV-NHIMATGH-----------KIGTPAPLFRKIEQAQVDEWKLKYGGQQSKESSNNKKETKQAEITFSSVEELEAAVA 187 (235)
Q Consensus 120 ~~p-~~i~~~G~-----------kiGn~~~~~~~i~~~~~d~lR~~f~G~~~~~l~~~~pe~~D~~fs~~~~~~~~~lv~ 187 (235)
++| +++++||+ |+||+++|.+.|++||+|++|+.. +... .++|.+|+++.+.+..++++
T Consensus 564 ~~Pf~~v~~hg~v~~~~G~KMSKS~GN~i~p~~~i~~ygaDalR~~l--------~~~~-~~~d~~fs~~~l~~~~~~~~ 634 (958)
T PLN02943 564 TVPFSYVYLHGLIRDSQGRKMSKTLGNVIDPLDTIKEFGTDALRFTL--------ALGT-AGQDLNLSTERLTSNKAFTN 634 (958)
T ss_pred CCChheEEEeccEECCCCCcccCcCCCCCCHHHHHHhcCChHHHHHH--------HhCC-CCCCccccHHHHHHHHHHHH
Confidence 445 78999997 589999999999999999999844 3333 47999999999998889999
Q ss_pred HhhhhHhhhhh
Q psy7269 188 TQGALLGTVDV 198 (235)
Q Consensus 188 ~~GNlV~R~~~ 198 (235)
+++|.++-+..
T Consensus 635 kl~N~~rf~~~ 645 (958)
T PLN02943 635 KLWNAGKFVLQ 645 (958)
T ss_pred HHHHHHHHHHh
Confidence 99998775543
No 18
>TIGR00392 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.
Probab=99.96 E-value=1.2e-29 Score=256.41 Aligned_cols=175 Identities=17% Similarity=0.274 Sum_probs=144.7
Q ss_pred ChHHHHHHHHhCCCCCChhHHHHHHHHHhcCCCCccceeccCCccccCC---C--C------------------------
Q psy7269 1 IEDKLQSWVSETSDQWSSNARVICKAWLKDGLKPRCITRDLKWGIPVPL---P--G------------------------ 51 (235)
Q Consensus 1 ~~~~L~e~~~~~~~~~p~~~~~~~~~~l~~gL~Dw~ISR~~~WGIpvP~---~--~------------------------ 51 (235)
+++++++++++.. ++|+++++++.+||+ +++||||||||.||+|||+ + +
T Consensus 431 ~k~~~l~~~~~i~-~~P~~~~~~~~~~l~-~l~DW~ISRqr~WG~pIP~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~w~ 508 (861)
T TIGR00392 431 IKDQMLEQIKKVN-WVPEWGEGRFGNWLE-NRPDWCISRQRYWGIPIPIWYCEDTGEPIVVGSIEELIELIELKGIDAWF 508 (861)
T ss_pred HHHHHHHHhCCcE-EECchHHHHHHHHHh-CCCcceeeccccCCCeeeEEEECCCCCCcCchhHHHHHHHHHHhCCcccc
Confidence 3678888886542 579999999999997 6999999999999999998 1 0
Q ss_pred ----------------------CCCCeEEEeccCccchhhcccccch---hhhhhcCCCCCCCceeEEEeecCCcc--hh
Q psy7269 52 ----------------------FENKVFYVWFDAPIGYMSLTQSYCG---QYEAWWKSAPQSKITLYQFMAKDNVP--FH 104 (235)
Q Consensus 52 ----------------------~~~~viyVWfDa~~~yls~~~~~~~---~~~~~W~~~~~~~~~~v~fiGkDi~~--Fh 104 (235)
-+.+|+||||||+++|++.. +++. ++..+||+| +|++|+||++ ||
T Consensus 509 ~~~~~~~~~~~~~~~~~~~~~~r~~dvlDvWfdS~~~~~~~~-~~~~~~~~f~~~~P~d-------~~i~G~Di~r~Wf~ 580 (861)
T TIGR00392 509 EDLHRDFLDKITLKSGDGGEYRRVPDVLDVWFDSGSMPYASI-HYPFENEKFKEVFPAD-------FILEGSDQTRGWFY 580 (861)
T ss_pred ccchhhhcCchhccCCCCcceEEccccccchhhcCcchHHhc-CCCCCcchhhccCCce-------EEEEecchhccHHH
Confidence 03459999999999999876 5653 467889954 9999999998 99
Q ss_pred hhHHHHHHHHhCCCcccceeeecccc-----------ccCCCCChHHHHhhhhhHHHHHHhcCCCccccccCcccccccC
Q psy7269 105 SIMFPATLVAAGDQYTKVNHIMATGH-----------KIGTPAPLFRKIEQAQVDEWKLKYGGQQSKESSNNKKETKQAE 173 (235)
Q Consensus 105 ai~wpa~L~~~~~~~~~p~~i~~~G~-----------kiGn~~~~~~~i~~~~~d~lR~~f~G~~~~~l~~~~pe~~D~~ 173 (235)
+++|+++++. | ..+|+++++||| |.||++.|.+.|++||+|++|+++ +.. +.++|.+
T Consensus 581 ~~~~~~~~~~-~--~~P~k~v~~hG~vl~~~G~KMSKSkGNvI~p~d~i~~yGaDalR~~l--------l~~-~~~~D~~ 648 (861)
T TIGR00392 581 SSLAIGTALF-G--QAPYKNVITHGFTLDEKGRKMSKSLGNVVDPLKVINKYGADILRLYV--------ASS-DPWEDLR 648 (861)
T ss_pred HHHHHHHHHc-C--CCChHhhEecceEECCCCCCcCCCCCCCCCHHHHHHHcCHHHHHHHH--------HhC-CCCCCce
Confidence 9999998774 4 346799999987 578999999999999999999844 444 6789999
Q ss_pred CCHhHHHHHH-HHHHHhhhhHhhhh
Q psy7269 174 ITFSSVEELE-AAVATQGALLGTVD 197 (235)
Q Consensus 174 fs~~~~~~~~-~lv~~~GNlV~R~~ 197 (235)
|+++.+.... .+.+.++|.++++.
T Consensus 649 fs~~~l~~~~~~~~n~l~N~~~~~~ 673 (861)
T TIGR00392 649 FSDEILKQVVEKYRKIRWNTYRFLL 673 (861)
T ss_pred ECHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998755 47777888888776
No 19
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=99.95 E-value=7.8e-29 Score=253.58 Aligned_cols=181 Identities=14% Similarity=0.237 Sum_probs=148.7
Q ss_pred ChHHHHHHHHhCCCC-CChhHHHHHHHHHhcCCCCccceeccCCccccCCC------------C----------------
Q psy7269 1 IEDKLQSWVSETSDQ-WSSNARVICKAWLKDGLKPRCITRDLKWGIPVPLP------------G---------------- 51 (235)
Q Consensus 1 ~~~~L~e~~~~~~~~-~p~~~~~~~~~~l~~gL~Dw~ISR~~~WGIpvP~~------------~---------------- 51 (235)
+++++.+++++++.. .|++.++++.+||+ +++|||||||++||+|||.. +
T Consensus 411 ~~~~al~~v~~~~i~~~P~~~~~~~~~wl~-~l~DWcISRQr~WG~pIP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (995)
T PTZ00419 411 MAKRAVEAVRNGELKIIPSSHENVWYHWLE-NIQDWCISRQLWWGHRIPAYRVISKGPETDPSDEEPWVVARSEEEALEK 489 (995)
T ss_pred HHHHHHHHhhcCCeEEEChHHHHHHHHHHh-ccccceeeeecccCceeeEEEeCCCCccccCCCCceEEEcCCHHHHHhh
Confidence 367888888765544 59999999999997 59999999999999999972 0
Q ss_pred -----------C----CCCeEEEeccCccchhhcccccch---hhhhhcCCCCCCCceeEEEeecCCcchhhhHHHHHHH
Q psy7269 52 -----------F----ENKVFYVWFDAPIGYMSLTQSYCG---QYEAWWKSAPQSKITLYQFMAKDNVPFHSIMFPATLV 113 (235)
Q Consensus 52 -----------~----~~~viyVWfDa~~~yls~~~~~~~---~~~~~W~~~~~~~~~~v~fiGkDi~~Fhai~wpa~L~ 113 (235)
. +.+|+||||||.+.|++.. +|++ ++..+||+| +++.|+||++| |+|.++
T Consensus 490 ~~~~~~~~~~~~~~~~~~DVlDtWFdS~l~p~~~~-g~p~~~~~~~~~~P~d-------~~~~G~Dii~~----W~arm~ 557 (995)
T PTZ00419 490 AKKKFGLSEEDFELEQDEDVLDTWFSSGLFPFSTL-GWPDQTDDLQRFFPTS-------LLETGSDILFF----WVARMV 557 (995)
T ss_pred hccccCCccccCCeEECCceEEEEEeCCHHHHHHh-CCCCChHHHhhcCCCc-------EEEechhHHhH----HHHHHH
Confidence 0 2489999999999998875 7864 467789954 99999999998 999887
Q ss_pred HhCCC--cccc-eeeecccc-----------ccCCCCChHHHHh------------------------------------
Q psy7269 114 AAGDQ--YTKV-NHIMATGH-----------KIGTPAPLFRKIE------------------------------------ 143 (235)
Q Consensus 114 ~~~~~--~~~p-~~i~~~G~-----------kiGn~~~~~~~i~------------------------------------ 143 (235)
+.+.. -.+| +.|++||+ |+||+++|.+.|+
T Consensus 558 ~~~~~~~~~~Pfk~v~~HG~v~d~~G~KMSKSlGNvIdP~~ii~~~~~~~l~~~~~~~~~~~~e~~~~~~~~~~~f~~gi 637 (995)
T PTZ00419 558 MMSLHLTDKLPFKTVFLHAMVRDSQGEKMSKSKGNVIDPLEVIEGISLQDLNQKLYEGNLPEKEIKRAIELQKKEFPNGI 637 (995)
T ss_pred HHHHHhcCCCChHHHhccceEECCCCCCcccCCCCcCChHHHhcccchhhHHHhhhccccchhhhhhHhhhhhccCCCCC
Confidence 76652 1355 79999997 6899999999998
Q ss_pred -hhhhHHHHHHhcCCCccccccCcccccccCCCHhHHHHHHHHHHHhhhhHhhhhhhhhc
Q psy7269 144 -QAQVDEWKLKYGGQQSKESSNNKKETKQAEITFSSVEELEAAVATQGALLGTVDVIVMS 202 (235)
Q Consensus 144 -~~~~d~lR~~f~G~~~~~l~~~~pe~~D~~fs~~~~~~~~~lv~~~GNlV~R~~~~~~~ 202 (235)
+||+|++|+.. +..++.++|.+|+.+.+.....++|+++|++++++..+..
T Consensus 638 ~~yGaDalR~~l--------~~~~~~~~Di~~~~~~v~~~~~f~nklwN~~rf~~~~~~~ 689 (995)
T PTZ00419 638 PECGTDALRFGL--------LAYTQQGRNINLDINRVVGYRHFCNKLWNAVKFALMKLLK 689 (995)
T ss_pred cccCcHHHHHHH--------HhcCCCCCCccccHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 89999999844 3445567899999999887778999999999998866543
No 20
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=99.95 E-value=1.5e-28 Score=222.12 Aligned_cols=150 Identities=20% Similarity=0.338 Sum_probs=127.3
Q ss_pred ChHHHHHHHHhCCCCCChhHHHHHHHHHhcCCCCccceeccCCccccCCCCCCCCeEEEeccCccchhhcccccc---hh
Q psy7269 1 IEDKLQSWVSETSDQWSSNARVICKAWLKDGLKPRCITRDLKWGIPVPLPGFENKVFYVWFDAPIGYMSLTQSYC---GQ 77 (235)
Q Consensus 1 ~~~~L~e~~~~~~~~~p~~~~~~~~~~l~~gL~Dw~ISR~~~WGIpvP~~~~~~~viyVWfDa~~~yls~~~~~~---~~ 77 (235)
|++++++++++.+ .+|++.++++.+||++++ |||||||+.||+|+| +++|||||||+++|++++ ++. +.
T Consensus 149 l~~~~~~~~~~~~-~~p~~~~~~~~~~l~~~~-d~~isR~~~WG~~~P-----~~~i~~Wfds~~~~~~~~-~~~~~~~~ 220 (312)
T cd00668 149 FKEKLLKALRRGK-IVPEHVKNRMEAWLESLL-DWAISRQRYWGTPLP-----EDVFDVWFDSGIGPLGSL-GYPEEKEW 220 (312)
T ss_pred HHHHHHHHHhcCC-cCChHHHHHHHHHHhCCC-CeEEeccCCCCCcCC-----cccccchhhccHHHHHHc-CCCccchh
Confidence 4688999998765 579999999999998766 999999999999999 689999999999999987 443 24
Q ss_pred hhhhcCCCCCCCceeEEEeecCCcchhhhHHHHHHHHhCCCcccceeeecccc-----------ccCCCCChHHHHhhhh
Q psy7269 78 YEAWWKSAPQSKITLYQFMAKDNVPFHSIMFPATLVAAGDQYTKVNHIMATGH-----------KIGTPAPLFRKIEQAQ 146 (235)
Q Consensus 78 ~~~~W~~~~~~~~~~v~fiGkDi~~Fhai~wpa~L~~~~~~~~~p~~i~~~G~-----------kiGn~~~~~~~i~~~~ 146 (235)
+.++||.+ +|++|+||+++|...|+|++.+.+.. .+|+++++||+ |.||++.+.+.+++++
T Consensus 221 ~~~~~~~d-------i~~~G~D~~~~h~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~g~KmSKS~gn~v~~~d~~~~~~ 292 (312)
T cd00668 221 FKDSYPAD-------WHLIGKDILRGWANFWITMLVALFGE-IPPKNLLVHGFVLDEGGQKMSKSKGNVIDPSDVVEKYG 292 (312)
T ss_pred hhhcCCce-------EEEEecchhhhHHHHHHHHHHHhcCC-CCcceeEECcEEEcCCCccccccCCCcCCHHHHHHHcC
Confidence 67788843 99999999999999999999988742 46889999986 4788888999999999
Q ss_pred hHHHHHHhcCCCccccccCcccccccCC
Q psy7269 147 VDEWKLKYGGQQSKESSNNKKETKQAEI 174 (235)
Q Consensus 147 ~d~lR~~f~G~~~~~l~~~~pe~~D~~f 174 (235)
+|++|+++ ++..|.++|.+|
T Consensus 293 ~da~R~~l--------~~~~~~~~d~~~ 312 (312)
T cd00668 293 ADALRYYL--------TSLAPYGDDIRL 312 (312)
T ss_pred cHHHHHHH--------HhcCCccCCCCC
Confidence 99999844 556667788765
No 21
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=99.95 E-value=1.5e-28 Score=248.83 Aligned_cols=177 Identities=14% Similarity=0.222 Sum_probs=145.3
Q ss_pred ChHHHHHHHHhCCC-CCChhHHHHHHHHHhcCCCCccceeccCCccccCC----CC------------------CCCCeE
Q psy7269 1 IEDKLQSWVSETSD-QWSSNARVICKAWLKDGLKPRCITRDLKWGIPVPL----PG------------------FENKVF 57 (235)
Q Consensus 1 ~~~~L~e~~~~~~~-~~p~~~~~~~~~~l~~gL~Dw~ISR~~~WGIpvP~----~~------------------~~~~vi 57 (235)
+++++.+++++++. ++|+++++++.+||+ +++|||||||++||+|||. ++ -+.+|+
T Consensus 367 ~~~~~~~~v~~~~i~~~P~~~~~~~~~wl~-~l~DWcISRq~~WG~pIP~~~~~~~~~~v~~~~~~~~~~~~~~~~~Dvl 445 (874)
T PRK05729 367 LAKPALEAVENGEIKFVPERWEKTYFHWME-NIQDWCISRQLWWGHRIPAWYDEDGEVYVGREEPEAREKALLTQDEDVL 445 (874)
T ss_pred HHHHHHHHHhcCCcEEEChHHHHHHHHHHh-cCccceeeeecccCCcccEEEeCCCcEEeCCcccccccccCeEeCCcee
Confidence 46788899976543 479999999999997 5999999999999999995 11 025689
Q ss_pred EEeccCccchhhcccccch---hhhhhcCCCCCCCceeEEEeecCCcchhhhHHHHHHHHhCCC--cccc-eeeecccc-
Q psy7269 58 YVWFDAPIGYMSLTQSYCG---QYEAWWKSAPQSKITLYQFMAKDNVPFHSIMFPATLVAAGDQ--YTKV-NHIMATGH- 130 (235)
Q Consensus 58 yVWfDa~~~yls~~~~~~~---~~~~~W~~~~~~~~~~v~fiGkDi~~Fhai~wpa~L~~~~~~--~~~p-~~i~~~G~- 130 (235)
++||||.+.|+++. +|++ ++..|||+| +|++|+||++| |++++++.+.. .++| +++++||+
T Consensus 446 DtWfsS~l~~~~~l-gwp~~~~~~~~~~P~d-------~~~~G~Dii~~----W~a~~~~~~~~~~~~~Pfk~v~~hG~v 513 (874)
T PRK05729 446 DTWFSSALWPFSTL-GWPEKTEDLKRFYPTS-------VLVTGFDIIFF----WVARMIMMGLHFTGQVPFKDVYIHGLV 513 (874)
T ss_pred cceecCCccHHHHh-CCCCCcHHHHhcCCcc-------cccccccccch----HHHHHHHHHHHhcCCCchhheEEeeeE
Confidence 99999999999886 8864 477889954 99999999998 99988887752 2355 89999997
Q ss_pred ----------ccCCCCChHHHHhhhhhHHHHHHhcCCCccccccCcccccccCCCHhHHHHHHHHHHHhhhhHhhhhhh
Q psy7269 131 ----------KIGTPAPLFRKIEQAQVDEWKLKYGGQQSKESSNNKKETKQAEITFSSVEELEAAVATQGALLGTVDVI 199 (235)
Q Consensus 131 ----------kiGn~~~~~~~i~~~~~d~lR~~f~G~~~~~l~~~~pe~~D~~fs~~~~~~~~~lv~~~GNlV~R~~~~ 199 (235)
|+||+++|.+.|++||+|++|+.+ ++.++.++|.+|+++.+.....++++++|. .|.+.+
T Consensus 514 ~d~~G~KMSKSlGNvIdP~dvi~~yGaDalR~~l--------l~~~~~~~Di~fs~~~l~~~~~~~nkl~N~-~Rf~~~ 583 (874)
T PRK05729 514 RDEQGRKMSKSKGNVIDPLDLIDKYGADALRFTL--------AALASPGRDIRFDEERVEGYRNFANKLWNA-SRFVLM 583 (874)
T ss_pred ECCCCCCcccCCCCCCCHHHHHHHhChHHHHHHH--------HhCCCCCCCceeCHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 689999999999999999999844 445567899999999998877899999994 555543
No 22
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=99.95 E-value=2.3e-28 Score=249.65 Aligned_cols=175 Identities=17% Similarity=0.272 Sum_probs=140.5
Q ss_pred ChHHHHHHHHhCCCCCChhHHH-HHHHHHhcCCCCccceeccCCccccCC----C-C----------------C------
Q psy7269 1 IEDKLQSWVSETSDQWSSNARV-ICKAWLKDGLKPRCITRDLKWGIPVPL----P-G----------------F------ 52 (235)
Q Consensus 1 ~~~~L~e~~~~~~~~~p~~~~~-~~~~~l~~gL~Dw~ISR~~~WGIpvP~----~-~----------------~------ 52 (235)
+++++.+++++. .+.|+++++ ++.+||+ +++|||||||+.||+|||+ + + .
T Consensus 413 ~k~~ll~~~~~i-~~~P~~~~~~~~~~wl~-~l~DW~ISRqr~WG~PIPiw~~~~~g~~~v~~~~~el~~~~g~~~~~~~ 490 (975)
T PRK06039 413 IKDRMLELNQKI-NWYPEHIKDGRFGKWLE-NARDWNISRNRYWGTPLPIWRCEDCGRIDVIGSIEELEELFGEDVEPID 490 (975)
T ss_pred HHHHHHHhhCCe-EEECcccchhhHHHHHh-cCccceeeeccccCCcceEEEecCCCeEEEeccHHHHHHHhCCCcchhh
Confidence 467888888653 245999988 9999996 6999999999999999996 1 1 0
Q ss_pred ---------------------CCCeEEEeccCccchhhcccccch----hhhhhcCCCCCCCceeEEEeecCCcchhhhH
Q psy7269 53 ---------------------ENKVFYVWFDAPIGYMSLTQSYCG----QYEAWWKSAPQSKITLYQFMAKDNVPFHSIM 107 (235)
Q Consensus 53 ---------------------~~~viyVWfDa~~~yls~~~~~~~----~~~~~W~~~~~~~~~~v~fiGkDi~~Fhai~ 107 (235)
+.+|+||||||.+.|++.. +|+. .+..+||+| +++.|+||++|
T Consensus 491 l~~~~~d~~~~~~~~~~~~~r~~dVlDvWFdSg~~p~a~~-~~p~~~~~~f~~~~Pad-------~~~~G~Di~r~---- 558 (975)
T PRK06039 491 LHRPYVDEVTLPCPDGGTMRRVPDVIDVWFDSGSMPYAQL-HYPFENKEWFEKHFPAD-------FIVEGIDQTRG---- 558 (975)
T ss_pred hcccccccccccCCCCcceEeccccccceeecCCccHHHh-CCcccChhhhhccCCce-------EEEechhhHhh----
Confidence 1389999999999999875 7753 367789964 89999999998
Q ss_pred HHHHHHHhCC---Ccccceeeecccc-----------ccCCCCChHHHHhhhhhHHHHHHhcCCCccccccCcccccccC
Q psy7269 108 FPATLVAAGD---QYTKVNHIMATGH-----------KIGTPAPLFRKIEQAQVDEWKLKYGGQQSKESSNNKKETKQAE 173 (235)
Q Consensus 108 wpa~L~~~~~---~~~~p~~i~~~G~-----------kiGn~~~~~~~i~~~~~d~lR~~f~G~~~~~l~~~~pe~~D~~ 173 (235)
|++.|+..+. +..+|+++++||+ |+||+++|.+.|++||+|++|+++ +...+.++|.+
T Consensus 559 Wf~~l~~~~~~~~~~~pfk~v~~hG~Vld~~G~KMSKSlGNvIdP~dli~~yGaDalR~~l--------ls~~~~~~D~~ 630 (975)
T PRK06039 559 WFYTLLALSTALFDRPPYKNVLVHGHVLDEDGQKMSKSLGNYVDPFEVFDKYGADALRWYL--------LSSSAPWEDLR 630 (975)
T ss_pred HHHHHHHHHHHhcCCCcccEEEEeeeEECCCCCCcCCCCCCcCCHHHHHHHhChHHHHHHH--------HhCCCCCCCce
Confidence 7777766442 1235689999997 579999999999999999999844 45556789999
Q ss_pred CCHhHHHHH-HHHHHHhhhhHhhhh
Q psy7269 174 ITFSSVEEL-EAAVATQGALLGTVD 197 (235)
Q Consensus 174 fs~~~~~~~-~~lv~~~GNlV~R~~ 197 (235)
|+++.+.+. ....++++|+++++.
T Consensus 631 fs~~~~~~~~~~~l~kl~N~~~f~~ 655 (975)
T PRK06039 631 FSEDGVREVVRKFLLTLWNVYSFFV 655 (975)
T ss_pred echhHHHHHHHHHHHHHHHHHHHHH
Confidence 999996554 466799999999865
No 23
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.
Probab=99.95 E-value=8.4e-28 Score=244.62 Aligned_cols=181 Identities=14% Similarity=0.147 Sum_probs=145.7
Q ss_pred ChHHHHHHHHhCCCCCChhHHHHHHHHHhcCCCCccceeccCCccccCCCC------CCCCeEEEeccCccchhhccc--
Q psy7269 1 IEDKLQSWVSETSDQWSSNARVICKAWLKDGLKPRCITRDLKWGIPVPLPG------FENKVFYVWFDAPIGYMSLTQ-- 72 (235)
Q Consensus 1 ~~~~L~e~~~~~~~~~p~~~~~~~~~~l~~gL~Dw~ISR~~~WGIpvP~~~------~~~~viyVWfDa~~~yls~~~-- 72 (235)
+++++++++++.. .+|+++++++.+||+ +|+|||||||+.||+|||.++ ..++++|+|++++++|++...
T Consensus 455 ~k~~~~~~l~~~~-~~P~~~~~~~~~~l~-~l~DW~ISRqr~WGtpIP~d~~~~ieslsdstiY~~~~~i~~~l~~~~~~ 532 (938)
T TIGR00395 455 WKELAHECLEGMR-IIPEEVKNAFEGKID-WLKDWACCRRYGLGTRLPWDEKWLIESLSDSTIYMAYYTIAHYLNKDYYG 532 (938)
T ss_pred HHHHHHHHHhcCE-EeCHHHHHHHHHHHh-hhhhcccccccccCcccceeecEEeeecchhhhhhhhccHHHHhhccCCC
Confidence 3678889997653 579999999999996 699999999999999999742 135899999999998875421
Q ss_pred ----------------------cc--------chhhhhhcCCCCCCCceeEEEeecCCcchhhhHHHHHHHHhCCCc-cc
Q psy7269 73 ----------------------SY--------CGQYEAWWKSAPQSKITLYQFMAKDNVPFHSIMFPATLVAAGDQY-TK 121 (235)
Q Consensus 73 ----------------------~~--------~~~~~~~W~~~~~~~~~~v~fiGkDi~~Fhai~wpa~L~~~~~~~-~~ 121 (235)
++ .++++.|||.| +|+.|+||++||+++| .+++.+..+. ..
T Consensus 533 ~~~l~~ev~D~~~~~~~~~~~t~~~~~~~~~~~~ef~~~yP~D-------~~~~GkDii~~H~~~~-i~~~~a~~~~~~~ 604 (938)
T TIGR00395 533 NEQMTDEFFDYIFLGKGDVKNTNIPLPAIQKLRREFEYWYPLD-------WRISGKDLIPNHLTFY-IFHHVAIFPEKFW 604 (938)
T ss_pred hHHCCcccCceEEECCCChhhcCCCHHHHHHHHHHHhhcCCce-------EEEEeeccccchHHHH-HHHHHHcCCcccc
Confidence 00 02456688854 9999999999999999 4444444331 25
Q ss_pred ceeeecccc----------ccCCCCChHHHHhhhhhHHHHHHhcCCCccccccCcccccccCCCHhHHHHHHHHHHHhhh
Q psy7269 122 VNHIMATGH----------KIGTPAPLFRKIEQAQVDEWKLKYGGQQSKESSNNKKETKQAEITFSSVEELEAAVATQGA 191 (235)
Q Consensus 122 p~~i~~~G~----------kiGn~~~~~~~i~~~~~d~lR~~f~G~~~~~l~~~~pe~~D~~fs~~~~~~~~~lv~~~GN 191 (235)
|+++++||| |+||+++|.+.|++||+|++|+.. +..++.++|.+|+++.+.+....+++++|
T Consensus 605 Pk~i~~~G~vl~~G~KMSKSlGNvI~p~d~i~~yGaDalRl~L--------l~~~~~~~D~~fs~~~~~~~~~~l~~l~n 676 (938)
T TIGR00395 605 PRGIVVNGYVMLEGKKMSKSKGNVLTLEQAVEKFGADVARLYI--------ADAAETVQDADWKESEVEGTILRLERLYE 676 (938)
T ss_pred CcEEEEeceEEeCCccccCcCCCCCCHHHHHHHcChHHHHHHH--------HhcCCCCCCCCcCHHHHHHHHHHHHHHHH
Confidence 799999998 689999999999999999999844 45566789999999999987777889999
Q ss_pred hHhhhhhh
Q psy7269 192 LLGTVDVI 199 (235)
Q Consensus 192 lV~R~~~~ 199 (235)
+++|++..
T Consensus 677 ~~~~~~~~ 684 (938)
T TIGR00395 677 FAEEITKE 684 (938)
T ss_pred HHHHHHhh
Confidence 99997654
No 24
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=99.94 E-value=1.4e-27 Score=242.32 Aligned_cols=173 Identities=16% Similarity=0.287 Sum_probs=131.6
Q ss_pred ChHHHHHHHHhCCCCCChhHHHHHHHHHhcCCCCccceeccCCccccCC----C-C---------------C--------
Q psy7269 1 IEDKLQSWVSETSDQWSSNARVICKAWLKDGLKPRCITRDLKWGIPVPL----P-G---------------F-------- 52 (235)
Q Consensus 1 ~~~~L~e~~~~~~~~~p~~~~~~~~~~l~~gL~Dw~ISR~~~WGIpvP~----~-~---------------~-------- 52 (235)
+++++++.+++. .+.|++.++++.+||+ +++||||||||.||+|||+ + + .
T Consensus 422 ~k~~~l~~~~~v-~~~P~~~~~r~~~~i~-~~~DWcISRQR~WG~PIP~~~~~~~g~~~~~~~~~~~i~~~~~~~g~~~W 499 (912)
T PRK05743 422 LREQALKAIEKV-KWIPAWGKNRIESMVE-NRPDWCISRQRTWGVPIPIFYHKETGELHPTPELIEHVAKLFEKEGIDAW 499 (912)
T ss_pred HHHHHHHHHccc-EEEChHHHHHHHHHHh-cCcCccccccceeCceEEEEEECCCCcEeecHHHHHHHHHHHHhhCCccc
Confidence 367788888754 3569999999999997 5999999999999999998 2 1 0
Q ss_pred ------------------CCCeEEEeccCccchhhcccccchhhhhhcCCCCCCCceeEEEeecCCcc--hhhhHHHHHH
Q psy7269 53 ------------------ENKVFYVWFDAPIGYMSLTQSYCGQYEAWWKSAPQSKITLYQFMAKDNVP--FHSIMFPATL 112 (235)
Q Consensus 53 ------------------~~~viyVWfDa~~~yls~~~~~~~~~~~~W~~~~~~~~~~v~fiGkDi~~--Fhai~wpa~L 112 (235)
+.+|++|||||.+.+.+.. ++. ...+||+| +|++|+||++ ||+++|++++
T Consensus 500 ~~~~~~~~~~~~~~~~~~~~DvlDvWfdSg~s~~~~~-~~~--~~~~~P~D-------l~~~G~Di~r~Wf~~~l~~~~~ 569 (912)
T PRK05743 500 FELDAKELLPDEADEYEKETDILDVWFDSGSSHAAVL-EQR--PELGYPAD-------LYLEGSDQHRGWFQSSLLTSVA 569 (912)
T ss_pred cccCHHHhcCCcccCEEECCchhhhhhhhCCCHHHHh-cCc--cccCCCce-------EEEecccccchHHHHHHHHHHH
Confidence 1224455555544433322 111 12467753 9999999996 8899999999
Q ss_pred HHhCCCcccceeeecccc-----------ccCCCCChHHHHhhhhhHHHHHHhcCCCccccccCcccccccCCCHhHHHH
Q psy7269 113 VAAGDQYTKVNHIMATGH-----------KIGTPAPLFRKIEQAQVDEWKLKYGGQQSKESSNNKKETKQAEITFSSVEE 181 (235)
Q Consensus 113 ~~~~~~~~~p~~i~~~G~-----------kiGn~~~~~~~i~~~~~d~lR~~f~G~~~~~l~~~~pe~~D~~fs~~~~~~ 181 (235)
+ .|. .+|+++++||| |+||+++|.+.|++||+|.+|+.. +. .+.++|.+|+.+.+.+
T Consensus 570 ~-~g~--~P~k~vl~HG~vld~~G~KMSKSlGNvIdP~~ii~~yGaDalR~~l--------l~-~~~~~D~~~s~~~l~~ 637 (912)
T PRK05743 570 T-RGK--APYKQVLTHGFTVDGKGRKMSKSLGNVIDPQDVIKKYGADILRLWV--------AS-TDYSGDVRISDEILKQ 637 (912)
T ss_pred h-cCC--CccceeEEeeeEECCCCCCCCCCCCCcCCHHHHHHhcChHHHHHHH--------Hh-cCCCCCeeecHHHHHH
Confidence 8 453 47899999998 689999999999999999999844 33 4557999999999988
Q ss_pred HHHHHHHhhhhHhhhh
Q psy7269 182 LEAAVATQGALLGTVD 197 (235)
Q Consensus 182 ~~~lv~~~GNlV~R~~ 197 (235)
..+..+++.|.++-++
T Consensus 638 ~~~~~~kl~N~~rf~~ 653 (912)
T PRK05743 638 VAEAYRRIRNTLRFLL 653 (912)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7778888888776444
No 25
>PLN02882 aminoacyl-tRNA ligase
Probab=99.94 E-value=1.3e-26 Score=239.32 Aligned_cols=185 Identities=15% Similarity=0.216 Sum_probs=140.2
Q ss_pred hHHHHHHHHhCCCCC-ChhH-HHHHHHHHhcCCCCccceeccCCccccCC----CCC-----------------------
Q psy7269 2 EDKLQSWVSETSDQW-SSNA-RVICKAWLKDGLKPRCITRDLKWGIPVPL----PGF----------------------- 52 (235)
Q Consensus 2 ~~~L~e~~~~~~~~~-p~~~-~~~~~~~l~~gL~Dw~ISR~~~WGIpvP~----~~~----------------------- 52 (235)
++++++..++. .| |+++ .+++.+||++ ++||||||||.||+|||+ ++.
T Consensus 435 k~~~l~~~~~i--~w~P~~~~~~r~~~wl~~-~~DW~ISRqR~WGtPIPvw~~~~~~~~~~~~s~~el~~~~~~~~~dlh 511 (1159)
T PLN02882 435 KDRLLENNKQT--YWVPDYVKEKRFHNWLEN-ARDWAVSRSRFWGTPLPIWISDDGEEVVVIGSIAELEKLSGVKVTDLH 511 (1159)
T ss_pred HHHHHHhhCCc--EEECCcchhhHHHHHHhc-CcccceeeccccCCccceEEeCCCCeEEecCcHHHHHHHhCCchhhcc
Confidence 56666644332 36 9998 5899999974 999999999999999997 110
Q ss_pred ---------C-------------CCeEEEeccCccchhhcccccch----hhhhhcCCCCCCCceeEEEeecCCcchhhh
Q psy7269 53 ---------E-------------NKVFYVWFDAPIGYMSLTQSYCG----QYEAWWKSAPQSKITLYQFMAKDNVPFHSI 106 (235)
Q Consensus 53 ---------~-------------~~viyVWfDa~~~yls~~~~~~~----~~~~~W~~~~~~~~~~v~fiGkDi~~Fhai 106 (235)
+ ..|+||||||.+.+++.. +||. ++..+||+| ++.+|+||+++
T Consensus 512 ~~~id~i~~p~~~~~~~~~~~r~~dVlD~WFdSg~~p~a~~-~~p~e~~~~f~~~~PaD-------~i~eG~Dq~Rg--- 580 (1159)
T PLN02882 512 RHFIDHITIPSSRGPEFGVLRRVDDVFDCWFESGSMPYAYI-HYPFENKELFEKNFPAD-------FVAEGLDQTRG--- 580 (1159)
T ss_pred ccchhhhccccccCCchhceEecCceeeeeeccCccHHHHc-CCcccChhHhhccCCce-------EEEEecchhhh---
Confidence 0 179999999999988875 7862 356789964 99999999998
Q ss_pred HHHHHHHHhCC---Ccccceeeecccc-----------ccCCCCChHHHHhhhhhHHHHHHhcCCCccccccCccccccc
Q psy7269 107 MFPATLVAAGD---QYTKVNHIMATGH-----------KIGTPAPLFRKIEQAQVDEWKLKYGGQQSKESSNNKKETKQA 172 (235)
Q Consensus 107 ~wpa~L~~~~~---~~~~p~~i~~~G~-----------kiGn~~~~~~~i~~~~~d~lR~~f~G~~~~~l~~~~pe~~D~ 172 (235)
|+++|+..+. +..+|+++++||| |+||+++|.+.|++||+|++|++.. ....+.++|.
T Consensus 581 -Wf~~ll~~s~~l~~~~pfk~VivhG~vlde~G~KMSKSlGNvIdP~evi~~YGADaLR~~Ll-------~s~~~~~~d~ 652 (1159)
T PLN02882 581 -WFYTLMVLSTALFDKPAFKNLICNGLVLAEDGKKMSKSLKNYPDPNEVIDKYGADALRLYLI-------NSPVVRAEPL 652 (1159)
T ss_pred -HHHHHHHHHHHhcCCCCcceeEEccEEECCCCCCcccCCCCCCCHHHHHHHhCcHHHHHHHH-------hCCcccCcCc
Confidence 7876665542 3457899999998 6899999999999999999998442 1122235788
Q ss_pred CCCHhHHHHHH-----HHHHHhhhhHhhhhhhhhccccccc
Q psy7269 173 EITFSSVEELE-----AAVATQGALLGTVDVIVMSSRTGAY 208 (235)
Q Consensus 173 ~fs~~~~~~~~-----~lv~~~GNlV~R~~~~~~~~~~~~~ 208 (235)
+|+.+.+.+.. .+-|..+++++++..+..++..+-.
T Consensus 653 ~fs~~~v~~~~~~~l~kl~Na~rfl~~~~~~~~~~~~~~~~ 693 (1159)
T PLN02882 653 RFKEEGVFGVVKDVFLPWYNAYRFLVQNAKRLEVEGGAPFV 693 (1159)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccCCC
Confidence 99999887632 5778888899887766544444433
No 26
>PRK13208 valS valyl-tRNA synthetase; Reviewed
Probab=99.94 E-value=1.3e-26 Score=232.71 Aligned_cols=177 Identities=16% Similarity=0.185 Sum_probs=141.3
Q ss_pred ChHHHHHHHHhCCCCCChhHHHHHHHHHhcCCC-CccceeccCCccccCC----C-C-----------------------
Q psy7269 1 IEDKLQSWVSETSDQWSSNARVICKAWLKDGLK-PRCITRDLKWGIPVPL----P-G----------------------- 51 (235)
Q Consensus 1 ~~~~L~e~~~~~~~~~p~~~~~~~~~~l~~gL~-Dw~ISR~~~WGIpvP~----~-~----------------------- 51 (235)
+++++++++++.. ++|++.++++.+||++ ++ |||||||+.||+|||. + |
T Consensus 365 ~~~~~~~~~~~~~-~~P~~~~~~~~~~l~~-~~~DW~ISRqr~WG~pIP~~~~~~~g~~~~~~~~~l~~~~~~d~~~~~~ 442 (800)
T PRK13208 365 LKEELLERGKEIN-WYPEHMRVRLENWIEG-LNWDWCISRQRYFGTPIPVWYCKDCGHPILPDEEDLPVDPTKDEPPGYK 442 (800)
T ss_pred HHHHHHHhhcCcE-EECHHHHHHHHHHHHh-cCCCceeeeccccCCcceEEEeCCCCCeecCchhhhccCchhhcccccc
Confidence 4688899997653 5799999999999975 66 9999999999999995 0 0
Q ss_pred ----------CCCCeEEEeccCccchhhcccccch---hhhhhcCCCCCCCceeEEEeecCCcchhhhHHHHHHHHhCCC
Q psy7269 52 ----------FENKVFYVWFDAPIGYMSLTQSYCG---QYEAWWKSAPQSKITLYQFMAKDNVPFHSIMFPATLVAAGDQ 118 (235)
Q Consensus 52 ----------~~~~viyVWfDa~~~yls~~~~~~~---~~~~~W~~~~~~~~~~v~fiGkDi~~Fhai~wpa~L~~~~~~ 118 (235)
-+.+|+||||||.+.|++.. +|+. ++..+||+| +++.|+||++||...+.++-.+...
T Consensus 443 ~~~~g~~~~~~~~dvlD~WfdS~~~~~~~~-~~~~~~~~~~~~~P~d-------~~~~G~Di~~~w~~~~l~~~~~~~~- 513 (800)
T PRK13208 443 CPQCGSPGFEGETDVMDTWATSSITPLIVT-GWERDEDLFEKVFPMD-------LRPQGHDIIRTWLFYTILRAYLLTG- 513 (800)
T ss_pred ccccCCcCEEecCCEEEEEEeCCchHHHHh-CCCCChhhhhhcCCce-------EEEeecchhhhHHHHHHHHHHHhcC-
Confidence 02479999999999888764 6653 467789954 8999999999988776544333221
Q ss_pred cccceeeecccc-----------ccCCCCChHHHHhhhhhHHHHHHhcCCCccccccCcccccccCCCHhHHHHHHHHHH
Q psy7269 119 YTKVNHIMATGH-----------KIGTPAPLFRKIEQAQVDEWKLKYGGQQSKESSNNKKETKQAEITFSSVEELEAAVA 187 (235)
Q Consensus 119 ~~~p~~i~~~G~-----------kiGn~~~~~~~i~~~~~d~lR~~f~G~~~~~l~~~~pe~~D~~fs~~~~~~~~~lv~ 187 (235)
..+++++++||+ |+||++.|.+.|++||+|++|+++ + ..+.++|.+|+.+.+....++++
T Consensus 514 ~~Pf~~v~~hg~v~~~~G~KMSKS~GN~i~p~~~i~~yg~D~lR~~l--------~-~~~~~~d~~fs~~~~~~~~~~l~ 584 (800)
T PRK13208 514 KLPWKNIMISGMVLDPDGKKMSKSKGNVVTPEELLEKYGADAVRYWA--------A-SARLGSDTPFDEKQVKIGRRLLT 584 (800)
T ss_pred CCCcceEEEeeEEECCCCCCCCCCCCCCCCHHHHHHHcCccHHHHHH--------h-cCCCCCCceecHHHHHHHHHHHH
Confidence 123488999987 578899999999999999999844 3 45677999999999988889999
Q ss_pred HhhhhHhhhh
Q psy7269 188 TQGALLGTVD 197 (235)
Q Consensus 188 ~~GNlV~R~~ 197 (235)
+++|+++.+.
T Consensus 585 kl~N~~r~~~ 594 (800)
T PRK13208 585 KLWNASRFVL 594 (800)
T ss_pred HHHHHHHHHH
Confidence 9999987665
No 27
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional
Probab=99.94 E-value=2.1e-26 Score=234.71 Aligned_cols=176 Identities=15% Similarity=0.226 Sum_probs=136.1
Q ss_pred hHHHHHHHHhCCCCCChhHHHHHHHHHhcCCCCccceeccCCccccCC--C--C--------------------------
Q psy7269 2 EDKLQSWVSETSDQWSSNARVICKAWLKDGLKPRCITRDLKWGIPVPL--P--G-------------------------- 51 (235)
Q Consensus 2 ~~~L~e~~~~~~~~~p~~~~~~~~~~l~~gL~Dw~ISR~~~WGIpvP~--~--~-------------------------- 51 (235)
++++++.+++.. +.|+++++++.+||+ +++||||||||.||+|||+ + +
T Consensus 459 k~~al~~i~~v~-~~P~~~~~r~~~~i~-~~~DWcISRQR~WG~PIP~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~w~~ 536 (961)
T PRK13804 459 RSRALDAIDKTR-FVPAAGQNRLYNMIE-DRPDWVISRQRAWGVPIPIFVAEDGEILMDEEVNARIADAFEEEGADAWFA 536 (961)
T ss_pred HHHHHHHHhccE-EECHHHHHHHHHHHh-cCccceeeeeccCCceeeEEEcCCCCEeccHHHHHHHHHHHHhcCCccccc
Confidence 466777776543 459999999999996 6999999999999999998 1 0
Q ss_pred ------------------CCCCeEEEeccCccchhhcccccchhhhhhcCCCCCCCceeEEEeecCCcc--hhhhHHHHH
Q psy7269 52 ------------------FENKVFYVWFDAPIGYMSLTQSYCGQYEAWWKSAPQSKITLYQFMAKDNVP--FHSIMFPAT 111 (235)
Q Consensus 52 ------------------~~~~viyVWfDa~~~yls~~~~~~~~~~~~W~~~~~~~~~~v~fiGkDi~~--Fhai~wpa~ 111 (235)
-+.+|+||||||.+.+.... +..+++ .||+| +|++|+||++ ||+ ++
T Consensus 537 ~~~~~~~~~~~~~~~~~~r~~DvlDvWFdSg~s~~~~~-~~~~~~--~~PaD-------~~~eG~Di~rgWF~s----~l 602 (961)
T PRK13804 537 EGAKERFLGGFHPNGEFTKVTDILDVWFDSGSTHAFVL-EDRPDL--KWPAD-------LYLEGSDQHRGWFNS----SL 602 (961)
T ss_pred cCHHHhcCcccCcccceEecCcceeeeecCCCCccccc-cCCccc--CCCce-------EEEEEcccccHHHHH----HH
Confidence 02468999999987654432 212222 58854 9999999996 887 44
Q ss_pred HHHhCCC-cccceeeecccc-----------ccCCCCChHHHHhhhhhHHHHHHhcCCCccccccCcccccccCCCHhHH
Q psy7269 112 LVAAGDQ-YTKVNHIMATGH-----------KIGTPAPLFRKIEQAQVDEWKLKYGGQQSKESSNNKKETKQAEITFSSV 179 (235)
Q Consensus 112 L~~~~~~-~~~p~~i~~~G~-----------kiGn~~~~~~~i~~~~~d~lR~~f~G~~~~~l~~~~pe~~D~~fs~~~~ 179 (235)
|++.+.. ..+|++|++||| |+||+++|.+.|++||+|.+|+.. +. .+.++|.+|+.+.+
T Consensus 603 l~s~~~~~~~P~k~V~~HG~vld~~G~KMSKSlGNvIdP~~ii~~yGaD~lRl~l--------ls-~~~~~D~~fs~~~l 673 (961)
T PRK13804 603 LESCGTRGRAPYKAVLTHGFTLDEKGEKMSKSLGNTVSPQDVIKQSGADILRLWV--------AS-VDYSDDQRIGKEIL 673 (961)
T ss_pred HHHHHhcCCCChhhEEEeccEECCCCCCccCCCCCcCCHHHHHHhcCHHHHHHHH--------Hh-CCCCCCcccCHHHH
Confidence 5554331 235689999998 689999999999999999999844 22 34679999999999
Q ss_pred HHHHHHHHHhhhhHhhhhhhhhc
Q psy7269 180 EELEAAVATQGALLGTVDVIVMS 202 (235)
Q Consensus 180 ~~~~~lv~~~GNlV~R~~~~~~~ 202 (235)
.+..+++++++|.++.+++.+..
T Consensus 674 ~~~~~~~~kL~N~~rf~l~nl~~ 696 (961)
T PRK13804 674 KQVSETYRKLRNTLRWLLGNLAH 696 (961)
T ss_pred HHHHHHHHHHHHHHHHHHhcccc
Confidence 88889999999999888776643
No 28
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=2.5e-26 Score=228.25 Aligned_cols=172 Identities=15% Similarity=0.256 Sum_probs=137.1
Q ss_pred hHHHHHHHHhCCC-CCChhHHHHHHHHHhcCCCCccceeccCCccccCCC-----C------------------------
Q psy7269 2 EDKLQSWVSETSD-QWSSNARVICKAWLKDGLKPRCITRDLKWGIPVPLP-----G------------------------ 51 (235)
Q Consensus 2 ~~~L~e~~~~~~~-~~p~~~~~~~~~~l~~gL~Dw~ISR~~~WGIpvP~~-----~------------------------ 51 (235)
.+++.+-+++... +.|+++.+++.+|++ +++|||||||++||+|||.- |
T Consensus 366 a~~~l~~~~~g~i~f~P~~~~~~~~~W~~-~i~DWcISRQlwwGh~IPvWy~~~~g~v~v~~~~~~~~~~~~~~~~~~~~ 444 (877)
T COG0525 366 AKKALEAVKDGKIKFVPERMEKRYEDWME-NIRDWCISRQLWWGHRIPVWYCKECGNVVVAEEEPEDPAAAEKCPKEELE 444 (877)
T ss_pred HHHHHHHHhcCCceEecHHHHHHHHHHHh-hCcCceeeeeeecCcccceEEecCCCcEEeCCccccchhhhccCchhccc
Confidence 4566666663332 579999999999996 59999999999999999981 1
Q ss_pred CCCCeEEEeccCccchhhcccccch---hhhhhcCCCCCCCceeEEEeecCCcchhhhHHHHHHHHhCC--Ccc-cceee
Q psy7269 52 FENKVFYVWFDAPIGYMSLTQSYCG---QYEAWWKSAPQSKITLYQFMAKDNVPFHSIMFPATLVAAGD--QYT-KVNHI 125 (235)
Q Consensus 52 ~~~~viyVWfDa~~~yls~~~~~~~---~~~~~W~~~~~~~~~~v~fiGkDi~~Fhai~wpa~L~~~~~--~~~-~p~~i 125 (235)
-+.+|+++||+|.+..+|++ +|++ ++++|.|.+ +.+.|+||++| |.|.++..+. ..+ +.+.|
T Consensus 445 qd~DVLDTWFSS~LwPfstl-gWp~~t~~l~~fyPt~-------llvtG~DIIff----Wvarmi~~~~~~~~~~PFk~V 512 (877)
T COG0525 445 QDEDVLDTWFSSSLWPFSTL-GWPEETPDLKKFYPTD-------LLVTGHDIIFF----WVARMIMRGLHLTGEVPFKDV 512 (877)
T ss_pred CCcchhhhhhhccccccccc-CCCCcchHHHhcCCCc-------cccccchhhHH----HHHHHHHHHHHhcCCCCccEE
Confidence 14679999999999999986 9986 577788843 89999999999 6665544332 223 34899
Q ss_pred ecccc-----------ccCCCCChHHHHhhhhhHHHHHHhcCCCccccccCcccccccCCCHhHHHHHHHHHHHhhhhHh
Q psy7269 126 MATGH-----------KIGTPAPLFRKIEQAQVDEWKLKYGGQQSKESSNNKKETKQAEITFSSVEELEAAVATQGALLG 194 (235)
Q Consensus 126 ~~~G~-----------kiGn~~~~~~~i~~~~~d~lR~~f~G~~~~~l~~~~pe~~D~~fs~~~~~~~~~lv~~~GNlV~ 194 (235)
++||. |+||+++|.+.|++||+|++|+.. +..+..++|.+|+++.+..--..+|++.|.-|
T Consensus 513 ~ihGLVrDe~G~KMSKS~GNvIDP~d~I~~yGaDAlRf~l--------a~~~~~G~Di~~~~~~~~~~rnF~nKlWNa~R 584 (877)
T COG0525 513 YIHGLVRDEQGRKMSKSKGNVIDPLDVIDKYGADALRFTL--------ASLASPGRDINFDEKRVEGYRNFLNKLWNATR 584 (877)
T ss_pred EEeeeEEcCCCCCCcccCCCcCCHHHHHHHhChHHHHHHH--------HhccCCCcccCcCHHHHHHHHHHHHHHHhHHH
Confidence 99985 689999999999999999999844 33445689999999999886677888888766
No 29
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed
Probab=99.92 E-value=2.3e-25 Score=225.97 Aligned_cols=178 Identities=16% Similarity=0.156 Sum_probs=133.4
Q ss_pred hHHHHHHHHhCCCCCChhHHHHHHHHHhcCCCCccceeccCCccccCCCC------CCCCeEEEeccCccchhhcc----
Q psy7269 2 EDKLQSWVSETSDQWSSNARVICKAWLKDGLKPRCITRDLKWGIPVPLPG------FENKVFYVWFDAPIGYMSLT---- 71 (235)
Q Consensus 2 ~~~L~e~~~~~~~~~p~~~~~~~~~~l~~gL~Dw~ISR~~~WGIpvP~~~------~~~~viyVWfDa~~~yls~~---- 71 (235)
++++++.+++.. .+|+++++++.+||+ +|+|||||||+.||+|||.++ ..+.++|+|+++.+.++...
T Consensus 409 k~~~~~~~~~~~-~~P~~~~~~~~~~l~-~l~DW~ISRqr~WGtpiP~~~~w~~esl~ds~iY~~~~~i~~~l~~~g~~~ 486 (897)
T PRK12300 409 KELAHKALDNME-IIPEEYRKEFENTID-WLKDRACARRRGLGTRLPWDEEWIIESLSDSTIYMAYYTIAHKIREYGIKP 486 (897)
T ss_pred HHHHHHHHccCE-EECHHHHHHHHHHHh-hhhhcceeeccccCCcCCccCCEEeeeccccchhhhHHHHHHHHHHcCCCh
Confidence 567788886553 579999999999997 699999999999999999742 23568899998877776531
Q ss_pred --------------cc----------cc--------hhhhhhcCCCCCCCceeEEEeecCCcchhhhHHHHHHHHhCCCc
Q psy7269 72 --------------QS----------YC--------GQYEAWWKSAPQSKITLYQFMAKDNVPFHSIMFPATLVAAGDQY 119 (235)
Q Consensus 72 --------------~~----------~~--------~~~~~~W~~~~~~~~~~v~fiGkDi~~Fhai~wpa~L~~~~~~~ 119 (235)
.+ ++ +++..|||.| +|+.|+||++||..+| .++..+..+.
T Consensus 487 ~~l~~~~~D~~~~~~~~~~~~~~~sg~p~~~~~~~~~~f~~~~P~D-------~~~~GkDii~~Hl~~~-~~~~~a~~~~ 558 (897)
T PRK12300 487 EQLTPEFFDYVFLGKGDPEEVSKKTGIPKEILEEMREEFLYWYPVD-------WRHSGKDLIPNHLTFF-IFNHVAIFPE 558 (897)
T ss_pred HHCChhhCceEEeCCCccccCchhcCCCHHHHHHHHHHHhccCCce-------EEEeeeccCccHHHHH-HHHHHHhcCC
Confidence 00 00 1244567753 9999999999999998 4444433221
Q ss_pred -ccceeeecccc----------ccCCCCChHHHHhhhhhHHHHHHhcCCCccccccCcccccccCCCHhHHHHHHHHHHH
Q psy7269 120 -TKVNHIMATGH----------KIGTPAPLFRKIEQAQVDEWKLKYGGQQSKESSNNKKETKQAEITFSSVEELEAAVAT 188 (235)
Q Consensus 120 -~~p~~i~~~G~----------kiGn~~~~~~~i~~~~~d~lR~~f~G~~~~~l~~~~pe~~D~~fs~~~~~~~~~lv~~ 188 (235)
..|+++++||| |+||+++|.+.|++||+|++|++ ++..++.++|.+|+.+.+.+...+++.
T Consensus 559 ~~~Pk~v~~hG~vl~~G~KMSKS~GNvVdp~eii~~yGaDalRl~--------L~~~~~~~~D~~fs~~~v~~~~~~l~r 630 (897)
T PRK12300 559 EKWPRGIVVNGFVLLEGKKMSKSKGNVIPLRKAIEEYGADVVRLY--------LTSSAELLQDADWREKEVESVRRQLER 630 (897)
T ss_pred CccCcEEEEcceEEECCccccCcCCCCCCHHHHHHHcChHHHHHH--------HHhCCCCCCCCccCHHHHHHHHHHHHH
Confidence 35799999998 67999999999999999999984 344566789999999887666555666
Q ss_pred hhhhHhhhh
Q psy7269 189 QGALLGTVD 197 (235)
Q Consensus 189 ~GNlV~R~~ 197 (235)
+-|.++++.
T Consensus 631 ~~~~~~~~~ 639 (897)
T PRK12300 631 FYELAKELI 639 (897)
T ss_pred HHHHHHHHh
Confidence 666555443
No 30
>PLN02381 valyl-tRNA synthetase
Probab=99.91 E-value=9.3e-25 Score=224.38 Aligned_cols=175 Identities=14% Similarity=0.233 Sum_probs=135.6
Q ss_pred hHHHHHHH---HhCCC-CCChhHHHHHHHHHhcCCCCccceeccCCccccCC---C---------C--------------
Q psy7269 2 EDKLQSWV---SETSD-QWSSNARVICKAWLKDGLKPRCITRDLKWGIPVPL---P---------G-------------- 51 (235)
Q Consensus 2 ~~~L~e~~---~~~~~-~~p~~~~~~~~~~l~~gL~Dw~ISR~~~WGIpvP~---~---------~-------------- 51 (235)
+++..+.+ .+... +.|+++++++.+||+ +++||||||||+||+|||+ . |
T Consensus 479 ~~~al~av~~~~~~~i~~~P~~~~~~~~~wl~-n~~DWcISRQr~WG~pIPiw~~~~~~~~~~~~g~~~~~~~~~~~~~~ 557 (1066)
T PLN02381 479 AKQALDAAIDGENKKLEFIPKQYLAEWKRWLE-NIRDWCISRQLWWGHRIPAWYVTLEDDQLKELGSYNDHWVVARNESD 557 (1066)
T ss_pred HHHHHHHHhhccCCceEEEChHHHHHHHHHHh-cCccceeeeecccCCccceEEeccChhhcccCCcccceEEEccchHh
Confidence 35556666 22222 359999999999996 6999999999999999997 1 1
Q ss_pred -----------------CCCCeEEEeccCccchhhcccccch---hhhhhcCCCCCCCceeEEEeecCCcchhhhHHHHH
Q psy7269 52 -----------------FENKVFYVWFDAPIGYMSLTQSYCG---QYEAWWKSAPQSKITLYQFMAKDNVPFHSIMFPAT 111 (235)
Q Consensus 52 -----------------~~~~viyVWfDa~~~yls~~~~~~~---~~~~~W~~~~~~~~~~v~fiGkDi~~Fhai~wpa~ 111 (235)
-+.+|+||||||.+.+++.+ +||. ++..++|+| +++.|+||++| |++.
T Consensus 558 ~~~~~~~~~~~~~~~~~rd~DVlDtWF~Sg~~p~~~l-g~P~~~~~~~~~~P~d-------~~~~G~Dii~~----W~~r 625 (1066)
T PLN02381 558 ALLEASQKFPGKKFELSQDPDVLDTWFSSGLFPLSVL-GWPDDTDDLKAFYPTS-------VLETGHDILFF----WVAR 625 (1066)
T ss_pred hcchhhcccCCCccceeecCceeeEEEeCCchHHHHh-cCCCCHHHHhccCCCe-------eeeecchhhhh----HHHH
Confidence 03569999999999998875 7864 466678854 88999999999 8876
Q ss_pred HHHhCC--Cc-ccceeeecccc-----------ccCCCCChHHHHh----------------------------------
Q psy7269 112 LVAAGD--QY-TKVNHIMATGH-----------KIGTPAPLFRKIE---------------------------------- 143 (235)
Q Consensus 112 L~~~~~--~~-~~p~~i~~~G~-----------kiGn~~~~~~~i~---------------------------------- 143 (235)
++..|. .. .++++|++||+ |+||+++|.+.|+
T Consensus 626 mi~~~~~~~~~~PFk~v~~hG~V~D~~G~KMSKS~GNvIdP~~vi~~~~~~~l~~~~~~~~~~~~e~~~~~~~~~~~~p~ 705 (1066)
T PLN02381 626 MVMMGMQLGGDVPFRKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEGNLDPKELVVAKEGQKKDFPN 705 (1066)
T ss_pred HHHHHHHhCCCCchHHheecceEECCCCCCCCCCCCCCCCHHHHHhhcchhhHHHhhhccccchhhhhhHhhhccccCCC
Confidence 655543 12 24589999997 6899999999998
Q ss_pred ---hhhhHHHHHHhcCCCccccccCcccccccCCCHhHHHHHHHHHHHhhhhHhhhh
Q psy7269 144 ---QAQVDEWKLKYGGQQSKESSNNKKETKQAEITFSSVEELEAAVATQGALLGTVD 197 (235)
Q Consensus 144 ---~~~~d~lR~~f~G~~~~~l~~~~pe~~D~~fs~~~~~~~~~lv~~~GNlV~R~~ 197 (235)
+||+|++|+.. +..++.++|.+++.+.+......++++-|.++-++
T Consensus 706 gi~~yGADalR~~l--------~~~~~~~~di~~~~~~v~~~r~f~nKlwNa~rf~~ 754 (1066)
T PLN02381 706 GIAECGTDALRFAL--------VSYTAQSDKINLDILRVVGYRQWCNKLWNAVRFAM 754 (1066)
T ss_pred CccccChHHHHHHH--------HcCCccccccCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999844 33445667899999888766688899999988543
No 31
>PLN02843 isoleucyl-tRNA synthetase
Probab=99.91 E-value=1.6e-24 Score=221.14 Aligned_cols=173 Identities=15% Similarity=0.242 Sum_probs=133.7
Q ss_pred hHHHHHHHHhCCCCCChhHHHHHHHHHhcCCCCccceeccCCccccCC----C-C-------------------------
Q psy7269 2 EDKLQSWVSETSDQWSSNARVICKAWLKDGLKPRCITRDLKWGIPVPL----P-G------------------------- 51 (235)
Q Consensus 2 ~~~L~e~~~~~~~~~p~~~~~~~~~~l~~gL~Dw~ISR~~~WGIpvP~----~-~------------------------- 51 (235)
++++.+.+++.. +.|++.++++.+||+ +++||||||||.||+|||. + +
T Consensus 438 k~~al~~~~~v~-~~P~~~~~r~~~~i~-~~~DWcISRQr~WG~pIP~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~w~ 515 (974)
T PLN02843 438 RQAALDAIDKVK-WIPAQGENRIRAMVS-GRSDWCISRQRTWGVPIPVFYHVETKEPLMNEETIAHVKSIVAQKGSDAWW 515 (974)
T ss_pred HHHHHHHHhccE-EEChHHHHHHHHHHh-cCcceeeeeccccccEEEEEEEcCCCCEeechhhHHHHHHHHHhhCCcccc
Confidence 567778886543 469999999999996 5999999999999999994 1 1
Q ss_pred ------------------C--CCCeEEEeccCccchhhcccccchhhhhhcCCCCCCCceeEEEeecCCcc--hhhhHHH
Q psy7269 52 ------------------F--ENKVFYVWFDAPIGYMSLTQSYCGQYEAWWKSAPQSKITLYQFMAKDNVP--FHSIMFP 109 (235)
Q Consensus 52 ------------------~--~~~viyVWfDa~~~yls~~~~~~~~~~~~W~~~~~~~~~~v~fiGkDi~~--Fhai~wp 109 (235)
+ +.+|+||||||.+.+.+.. +.. ...+||+| +|++|+||++ ||+++|+
T Consensus 516 ~~~~~~l~p~~~~~~~~~~~k~~DvlDvWFdSg~~~~~~~-~~~--~~~~~PaD-------l~~eG~Di~rgWf~s~l~~ 585 (974)
T PLN02843 516 YMDVEDLLPEKYRDKASDYEKGTDTMDVWFDSGSSWAGVL-GSR--EGLSYPAD-------LYLEGSDQHRGWFQSSLLT 585 (974)
T ss_pred cCCHHHhCcccccCchhhhEecccccccchhcCCChHHHh-ccc--cccCCCce-------eeeeeccccchHHHHHHHH
Confidence 0 2378999999999776543 211 23468864 9999999998 9999999
Q ss_pred HHHHHhCCCcccceeeecccc-----------ccCCCCChHHHHh---------hhhhHHHHHHhcCCCccccccCcccc
Q psy7269 110 ATLVAAGDQYTKVNHIMATGH-----------KIGTPAPLFRKIE---------QAQVDEWKLKYGGQQSKESSNNKKET 169 (235)
Q Consensus 110 a~L~~~~~~~~~p~~i~~~G~-----------kiGn~~~~~~~i~---------~~~~d~lR~~f~G~~~~~l~~~~pe~ 169 (235)
++.+ .|. .+++++++||| |+||+++|.+.|+ +||+|.+|+... . ...+
T Consensus 586 ~~~~-~g~--~Pfk~v~~HG~vld~~G~KMSKSlGNvI~p~~vi~~~~~~~~~~~yGaD~lR~~l~--------~-~~~~ 653 (974)
T PLN02843 586 SVAT-KGK--APYKSVLTHGFVLDEKGFKMSKSLGNVVDPRLVIEGGKNQKQEPAYGADVLRLWVA--------S-VDYT 653 (974)
T ss_pred HHHh-cCC--CccceEEEeccEECCCCCCcCCCCCCcCCHHHHHhhccccccccccChHHHHHHHH--------h-cccC
Confidence 8854 443 35799999997 6899999999999 799999998442 1 2245
Q ss_pred cccCCCHhHHHHHHHHHHHhhhhHhhhhh
Q psy7269 170 KQAEITFSSVEELEAAVATQGALLGTVDV 198 (235)
Q Consensus 170 ~D~~fs~~~~~~~~~lv~~~GNlV~R~~~ 198 (235)
+|.+|+.+.+.+..+..+++-|.++.+++
T Consensus 654 ~d~~~s~~~l~~~~~~~~kl~n~~rf~lg 682 (974)
T PLN02843 654 GDVLIGPQILKQMSDIYRKLRGTLRYLLG 682 (974)
T ss_pred CCceeCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 79999999888766667777776665543
No 32
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases. Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=99.91 E-value=1.1e-24 Score=197.53 Aligned_cols=147 Identities=17% Similarity=0.295 Sum_probs=119.8
Q ss_pred ChHHHHHHHHhCCCCCChhHHHHHHHHHhcCCCCccceeccCCccccCCCCCCCCeEEEeccCcc---chhhccccc---
Q psy7269 1 IEDKLQSWVSETSDQWSSNARVICKAWLKDGLKPRCITRDLKWGIPVPLPGFENKVFYVWFDAPI---GYMSLTQSY--- 74 (235)
Q Consensus 1 ~~~~L~e~~~~~~~~~p~~~~~~~~~~l~~gL~Dw~ISR~~~WGIpvP~~~~~~~viyVWfDa~~---~yls~~~~~--- 74 (235)
|+++|+++++++. .||++.++.+.+||+ |||++.||||+|. ++++|||+|+++ +|+++....
T Consensus 141 ~~~~l~~~l~~~~-~~p~~~~~~~~~~l~-------isR~~~wGipvP~----~~~i~~w~ds~~y~~~y~~~~~~~~~~ 208 (314)
T cd00812 141 WKEKLLKDLEKLD-GWPEEVRAMQENWIG-------CSRQRYWGTPIPW----TDTMESLSDSTWYYARYTDAHNLEQPY 208 (314)
T ss_pred HHHHHHHHHHhcC-cCCHHHHHHHHHHhe-------eeeecCCcCCcCc----ccccccccccHHHHHHHHhcccccCcc
Confidence 4789999998774 699999999999995 9999999999995 689999999997 788765211
Q ss_pred -------chhhhhhcCCCCCCCceeEEEeecCCcchhh---hHHHHHHHHhCC-Ccccceeeecccc----------ccC
Q psy7269 75 -------CGQYEAWWKSAPQSKITLYQFMAKDNVPFHS---IMFPATLVAAGD-QYTKVNHIMATGH----------KIG 133 (235)
Q Consensus 75 -------~~~~~~~W~~~~~~~~~~v~fiGkDi~~Fha---i~wpa~L~~~~~-~~~~p~~i~~~G~----------kiG 133 (235)
.+.+..|||.| +|++|+||++||+ ++|+++|.+.|. ...+|+++++||+ |.|
T Consensus 209 ~~~~~~~~~~~~~w~p~d-------i~v~G~D~i~~h~~~~~~~~~~l~~~g~~~~~~~~~~~~~g~v~~~g~KmSkS~G 281 (314)
T cd00812 209 EGDLEFDREEFEYWYPVD-------IYIGGKEHAPNHLLYSRFNHKALFDEGLVTDEPPKGLIVQGMVLLEGEKMSKSKG 281 (314)
T ss_pred hhhhhhhHHHHHHhCCCe-------eeecchhHHHHHHHHHHHHHHHHcCcccccccCcHHheecceEecCccccCCcCC
Confidence 12466777743 9999999999997 899999999884 0146888889987 578
Q ss_pred CCCChHHHHhhhhhHHHHHHhcCCCccccccCcccccccCCCH
Q psy7269 134 TPAPLFRKIEQAQVDEWKLKYGGQQSKESSNNKKETKQAEITF 176 (235)
Q Consensus 134 n~~~~~~~i~~~~~d~lR~~f~G~~~~~l~~~~pe~~D~~fs~ 176 (235)
|++.+.+.|+++++|++|+++ ++.+| +|.+|++
T Consensus 282 n~v~~~dll~~~~~Da~R~~l--------l~~~~--~~~~f~~ 314 (314)
T cd00812 282 NVVTPDEAIKKYGADAARLYI--------LFAAP--PDADFDW 314 (314)
T ss_pred CCCCHHHHHHHhCcHHHHHHH--------HhcCC--cCCCCCC
Confidence 888999999999999999844 44555 7788874
No 33
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional
Probab=99.90 E-value=4.8e-24 Score=220.46 Aligned_cols=162 Identities=15% Similarity=0.266 Sum_probs=120.9
Q ss_pred CC-ChhH-HHHHHHHHhcCCCCccceeccCCccccCC----CC-----C-------------------------------
Q psy7269 15 QW-SSNA-RVICKAWLKDGLKPRCITRDLKWGIPVPL----PG-----F------------------------------- 52 (235)
Q Consensus 15 ~~-p~~~-~~~~~~~l~~gL~Dw~ISR~~~WGIpvP~----~~-----~------------------------------- 52 (235)
.| |+++ .+++.+||+ +++||||||||+||+|||+ +. .
T Consensus 550 ~w~P~~~~~~r~~~wl~-n~~DWcISRqR~WGtPIPvW~~~~~~~~~~i~s~~el~~~~~~~~~~dlh~~~iD~~~~~~~ 628 (1205)
T PTZ00427 550 YWIPAHIKEKKFHNWIK-DAKDWCISRNRYWGTPIPIWADEKMETVICVESIKHLEELSGVKNINDLHRHFIDHIEIKNP 628 (1205)
T ss_pred EEeCchhhHhHHHHHHh-cCccceeeeccccCccceeEEcCCCCeEeccCCHHHHHHHhccccchhhcccccChhhccCC
Confidence 35 8888 689999997 5999999999999999995 10 0
Q ss_pred ----------CCCeEEEeccCccchhhcccccch-----hhhhhcCCCCCCCceeEEEeecCCcchhhhHHHHHHHHhCC
Q psy7269 53 ----------ENKVFYVWFDAPIGYMSLTQSYCG-----QYEAWWKSAPQSKITLYQFMAKDNVPFHSIMFPATLVAAGD 117 (235)
Q Consensus 53 ----------~~~viyVWfDa~~~yls~~~~~~~-----~~~~~W~~~~~~~~~~v~fiGkDi~~Fhai~wpa~L~~~~~ 117 (235)
+..|+||||||.+.+++.. +||. +++.++|+| +...|.||+++ |.+.++..+.
T Consensus 629 ~g~~~~~~~r~~DVlD~WFdSg~~p~a~~-~~P~~~~~~~f~~~fPaD-------~i~eG~Dq~rg----Wf~s~l~~s~ 696 (1205)
T PTZ00427 629 KGKTYPKLKRIPEVFDCWFESGSMPYAKV-HYPFSTEKEDFHKIFPAD-------FIAEGLDQTRG----WFYTLLVIST 696 (1205)
T ss_pred ccccccceeecCceEEEEEeCCCChHHHh-CCCcccchhhHhccCCce-------EEEEecchhcc----HHHHHHHHHH
Confidence 0139999999999888654 7752 466788864 89999999998 5554443332
Q ss_pred ---Ccccceeeecccc-----------ccCCCCChHHHHhhhhhHHHHHHhcCCCccccccCcccccccCCCHhHHHHHH
Q psy7269 118 ---QYTKVNHIMATGH-----------KIGTPAPLFRKIEQAQVDEWKLKYGGQQSKESSNNKKETKQAEITFSSVEELE 183 (235)
Q Consensus 118 ---~~~~p~~i~~~G~-----------kiGn~~~~~~~i~~~~~d~lR~~f~G~~~~~l~~~~pe~~D~~fs~~~~~~~~ 183 (235)
+..++++|++||| |+||+++|.+.|++||+|++|++... ...+.++|.+|+.+.+.+..
T Consensus 697 ~l~~~~PfK~VlvHG~Vld~dG~KMSKSlGNvIDP~evI~kYGADaLR~~Lls-------~~~~~~~Dl~Fse~~v~e~~ 769 (1205)
T PTZ00427 697 LLFDKAPFKNLICNGLVLASDGKKMSKRLKNYPDPLYILDKYGADSLRLYLIN-------SVAVRAENLKFQEKGVNEVV 769 (1205)
T ss_pred HhcCCCCcceeEEccEEEcCCCCCcccCCCCCCCHHHHHHhcCCcHHHHHHHh-------cCCCCCcccccCHHHHHHHH
Confidence 2234589999998 68999999999999999999984421 12234689999999986543
Q ss_pred -HHHHHhhhhHhhh
Q psy7269 184 -AAVATQGALLGTV 196 (235)
Q Consensus 184 -~lv~~~GNlV~R~ 196 (235)
..++++-|..+-+
T Consensus 770 r~~l~klwN~~rF~ 783 (1205)
T PTZ00427 770 KSFILPFYHSFRFF 783 (1205)
T ss_pred HHHHHHHHHHHHHH
Confidence 5556666655433
No 34
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=3.4e-23 Score=207.81 Aligned_cols=172 Identities=14% Similarity=0.229 Sum_probs=128.0
Q ss_pred hHHHHHHHHhCCCCCChhHHHHHHHHHhcCCCCccceeccCCccccCC----C-C-------------------------
Q psy7269 2 EDKLQSWVSETSDQWSSNARVICKAWLKDGLKPRCITRDLKWGIPVPL----P-G------------------------- 51 (235)
Q Consensus 2 ~~~L~e~~~~~~~~~p~~~~~~~~~~l~~gL~Dw~ISR~~~WGIpvP~----~-~------------------------- 51 (235)
++++++-+++.. +.|++.++|+.+||+ +.+||||||||.||+|||+ + |
T Consensus 426 r~~~l~~i~~v~-w~P~~~~~R~~~mve-~r~DW~ISRQR~WGvPiPi~~~~~~g~~~~~~~El~e~~~~~~~~~g~~~w 503 (933)
T COG0060 426 RDKMLKEINKVN-WVPDWGKNRFGNMVE-NRPDWCISRQRYWGVPIPVWYCKETGEILVITEELEELVGQLVEEKGIDDW 503 (933)
T ss_pred HHHHHHHHhcce-EEChhHHHHHHHHHc-CCCcceeeccccCCCceeEEEECCCCCeeccHHHHHHHHHHHhhhcCchhh
Confidence 566665555332 349999999999996 6999999999999999998 1 1
Q ss_pred ---------C-----------CCCeEEEeccCccchhhcccccchhhhhhcCCCCCCCceeEEEeecCCcc--hhhhHHH
Q psy7269 52 ---------F-----------ENKVFYVWFDAPIGYMSLTQSYCGQYEAWWKSAPQSKITLYQFMAKDNVP--FHSIMFP 109 (235)
Q Consensus 52 ---------~-----------~~~viyVWfDa~~~yls~~~~~~~~~~~~W~~~~~~~~~~v~fiGkDi~~--Fhai~wp 109 (235)
. ...|+||||||...+.+......+ ..|++- ..+ ++.+|.||+| ||+..-.
T Consensus 504 ~~~~idel~~~~~~~g~~~~rv~DvlDVWFDSGs~~~a~~~~~~~---~~~~~~-~aD---~~lEGsDQ~RGWF~Ssl~~ 576 (933)
T COG0060 504 HRPDIDELLPPCPEDGKEYRRVPDVLDVWFDSGSTPYAVLHPREN---LKFPAL-FAD---FYLEGSDQTRGWFYSSLLT 576 (933)
T ss_pred hccchHhhcCCCCCCcceeEecCcceEEEEcCCCCcccccCCccc---ccCccc-cCc---EEEEeccccchhHHHHHHH
Confidence 0 247999999999988877531111 233320 002 8999999996 6665544
Q ss_pred HHHHHhCCCcccceeeecccc-----------ccCCCCChHHHHhhhhhHHHHHHhcCCCccccccCcccccccCCCHhH
Q psy7269 110 ATLVAAGDQYTKVNHIMATGH-----------KIGTPAPLFRKIEQAQVDEWKLKYGGQQSKESSNNKKETKQAEITFSS 178 (235)
Q Consensus 110 a~L~~~~~~~~~p~~i~~~G~-----------kiGn~~~~~~~i~~~~~d~lR~~f~G~~~~~l~~~~pe~~D~~fs~~~ 178 (235)
+..+-. ..+++.+++||| |+||++.|.+.+++||+|.||+.. +... .+.|..+|++.
T Consensus 577 s~a~~~---~aPYk~vltHGfvlDe~GrKMSKSlGN~v~P~~V~~~yGADiLRLwv--------~ssd-~~~dl~~s~~i 644 (933)
T COG0060 577 STALFG---RAPYKNVLTHGFVLDEKGRKMSKSLGNVVDPQDVIDKYGADILRLWV--------ASSD-YWEDLRFSDEI 644 (933)
T ss_pred HHHHcC---CchHHHHhhcccEECCCCCCccccCCCcCCHHHHHHhhCchheeeee--------eecC-chhccccCHHH
Confidence 444332 345689999998 689999999999999999999833 3222 56899999999
Q ss_pred HHHHHHHHHHhhhhHh
Q psy7269 179 VEELEAAVATQGALLG 194 (235)
Q Consensus 179 ~~~~~~lv~~~GNlV~ 194 (235)
++++.+..+.+-|..+
T Consensus 645 l~~~~~~~r~irNt~r 660 (933)
T COG0060 645 LKQVREVYRKIRNTYR 660 (933)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888888888888666
No 35
>PLN02959 aminoacyl-tRNA ligase
Probab=99.85 E-value=3.4e-21 Score=198.53 Aligned_cols=161 Identities=17% Similarity=0.189 Sum_probs=117.3
Q ss_pred hHHHHHHHHhCCCCCChhHHHHHHHHHhcCCCCccceeccCCccccCCCC----------------C-------------
Q psy7269 2 EDKLQSWVSETSDQWSSNARVICKAWLKDGLKPRCITRDLKWGIPVPLPG----------------F------------- 52 (235)
Q Consensus 2 ~~~L~e~~~~~~~~~p~~~~~~~~~~l~~gL~Dw~ISR~~~WGIpvP~~~----------------~------------- 52 (235)
+++.++.+++.. +.|+++++++.+||+ .++|||||||+.||+|||.+. +
T Consensus 546 k~~a~~~l~~v~-~~P~~~~~~~~~wl~-~l~DWciSRQr~wGtpIPWd~~~~ieslsdstiy~a~yti~~~~~~~~~~g 623 (1084)
T PLN02959 546 KKKAEKCLSKMN-LYSDETRHGFEHTLG-WLNQWACSRSFGLGTRIPWDEQFLIESLSDSTIYMAYYTVAHLLQGGDMYG 623 (1084)
T ss_pred HHHHHHHHcccE-EECHHHHHHHHHHHh-CCCceeecccccCCCcCCcccceeeccCCCCceeechhhHHHHHhhhhccC
Confidence 466777776542 469999999999996 699999999999999999310 0
Q ss_pred -----------CCCeEEEeccCccchhhcccccc--------hhhhhhcCCCCCCCceeEEEeecCCcchhhhHHHHHHH
Q psy7269 53 -----------ENKVFYVWFDAPIGYMSLTQSYC--------GQYEAWWKSAPQSKITLYQFMAKDNVPFHSIMFPATLV 113 (235)
Q Consensus 53 -----------~~~viyVWfDa~~~yls~~~~~~--------~~~~~~W~~~~~~~~~~v~fiGkDi~~Fhai~wpa~L~ 113 (235)
...|+|+||++.....++ +|+ +++..++|.| +++.|+||+++|..+.-..-.
T Consensus 624 ~~~~~i~~~~~~~dV~D~wF~Sg~~p~~t--~~p~~~l~~~r~ef~~~yP~D-------l~~sG~Dii~~wl~~~l~~~~ 694 (1084)
T PLN02959 624 KDKSSIKPEQMTDEVWDFVFCGGPLPKSS--DIPAELLEKMKQEFEYWYPFD-------LRVSGKDLIQNHLTFAIYNHT 694 (1084)
T ss_pred CccccCChhhcCccceeEeecCCCccccc--CCCHHHHhhhhHHHHhhCCCe-------EEEecccHHHHHHHHHHHHHH
Confidence 245999999997755443 443 2455567753 899999999998643221111
Q ss_pred HhCCCcccceeeecccc----------ccCCCCChHHHHhhhhhHHHHHHhcCCCccccccCcccccccCCCHhHHHH
Q psy7269 114 AAGDQYTKVNHIMATGH----------KIGTPAPLFRKIEQAQVDEWKLKYGGQQSKESSNNKKETKQAEITFSSVEE 181 (235)
Q Consensus 114 ~~~~~~~~p~~i~~~G~----------kiGn~~~~~~~i~~~~~d~lR~~f~G~~~~~l~~~~pe~~D~~fs~~~~~~ 181 (235)
+.-..-..|+.+++||| |.||+++|.+.|++||+|++|+.. +..++..+|.+|+.+...+
T Consensus 695 al~~~~P~p~~v~v~G~V~~~G~KMSKSkGNvI~p~diI~kyGADalRl~l--------a~~~~~~~D~nF~~k~~n~ 764 (1084)
T PLN02959 695 AIWAEEHWPRGFRCNGHLMLNSEKMSKSTGNFLTLRQAIEEFSADATRFAL--------ADAGDGVDDANFVFETANA 764 (1084)
T ss_pred HhcCCCCCCceEEEccEEecCCcCccccCCCcCCHHHHHHHhCchHHHHHH--------hhcCCccCCCCccHHHHHH
Confidence 11111125688999996 689999999999999999999844 3345667899999876544
No 36
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....
Probab=99.84 E-value=6.3e-22 Score=193.53 Aligned_cols=154 Identities=16% Similarity=0.333 Sum_probs=104.1
Q ss_pred hHHHHHHHHhCCCCCChhHHHHHHHHHhcCCCCccceeccCCccccCCC---C---------------------------
Q psy7269 2 EDKLQSWVSETSDQWSSNARVICKAWLKDGLKPRCITRDLKWGIPVPLP---G--------------------------- 51 (235)
Q Consensus 2 ~~~L~e~~~~~~~~~p~~~~~~~~~~l~~gL~Dw~ISR~~~WGIpvP~~---~--------------------------- 51 (235)
++++.+.+++.. +.|+..++++.+||+ .++||||||||.||+|||+. .
T Consensus 386 k~~~l~~~~~i~-~~P~~~~~~~~~~i~-~l~DWcISRQR~WG~PIPiw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (601)
T PF00133_consen 386 KKKALEALEKIK-FYPESYRKRFENWID-NLRDWCISRQRYWGTPIPIWYCEDCGEVLVIESTIELIADRVEKEGIDAWL 463 (601)
T ss_dssp HHHHHHHHHTSE-ESSSTCHHHHHHHHH-T--EEE-EESSSSSEBETEEEETTSEEEECCGGHHHHHHHHSTHHHHSCTS
T ss_pred HHHHHhhcccce-EEcccchhhhhhhcc-ccccchhhccCCCCccceeeecccCcccccccccccccccccccccccccc
Confidence 567778887553 469999999999997 59999999999999999971 0
Q ss_pred ----------------CCCCeEEEeccCccchhhcccccc----hhhhhhcCCCCCCCceeEEEeecCCcchhhhHHHHH
Q psy7269 52 ----------------FENKVFYVWFDAPIGYMSLTQSYC----GQYEAWWKSAPQSKITLYQFMAKDNVPFHSIMFPAT 111 (235)
Q Consensus 52 ----------------~~~~viyVWfDa~~~yls~~~~~~----~~~~~~W~~~~~~~~~~v~fiGkDi~~Fhai~wpa~ 111 (235)
-+..|++|||||.+.+++.. +++ ++++.++|.| +++.|+||+++|-.. .+
T Consensus 464 ~~~~~~~~~~~~~~~~~~~dvlD~WfdSg~~~~~~~-~~~~~~~~~~~~~~P~D-------~~~~G~D~~~~W~~~--~l 533 (601)
T PF00133_consen 464 HKPAEDKLPCCGGELRRDTDVLDTWFDSGLWPFAVL-GWPENDREEFEYWYPVD-------LYIEGKDQIRGWFQS--SL 533 (601)
T ss_dssp SHHHHHHHTTTSSEEEEHS-EE-HHHHHCTCHHHHT-TSTTCSCHHHHHHSSBS-------EEEEEGGGTTTHHHH--HH
T ss_pred cccccccccccccceEEeeeeccccccccCCccccc-ccccccchhccccCCcc-------cccCCccchhhHHHH--hH
Confidence 03579999999998887765 554 3467777854 899999999986422 22
Q ss_pred HHHhCC-Ccccceeeecccc-----------ccCCCCChHHHHhhhhhHHHHHHhcCCCccccccCcccccccCCC
Q psy7269 112 LVAAGD-QYTKVNHIMATGH-----------KIGTPAPLFRKIEQAQVDEWKLKYGGQQSKESSNNKKETKQAEIT 175 (235)
Q Consensus 112 L~~~~~-~~~~p~~i~~~G~-----------kiGn~~~~~~~i~~~~~d~lR~~f~G~~~~~l~~~~pe~~D~~fs 175 (235)
+.+..+ +-.+++.+++||+ |.||+++|.+.|++||+|++|+.. +..++.++|.+||
T Consensus 534 ~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lRl~~--------~~~~~~~~D~~~s 601 (601)
T PF00133_consen 534 FLSVALFGKEPFKKVITHGFVLDEDGRKMSKSKGNVIDPEDIIEKYGADALRLWL--------ASSADPGQDINFS 601 (601)
T ss_dssp HHHHHHSSSTSBSEEEEE--EEETTSSB-BTTTTB--BHHHHHHHT-HHHHHHHH--------HHHS-TTS-EEE-
T ss_pred hhccccccCCchheeeecccccccceeecccCCCcccCHHHHHHHhCcHHHHHHH--------HhcCCcccCcccC
Confidence 222111 1234588999997 579999999999999999999854 2233445676654
No 37
>KOG0432|consensus
Probab=99.80 E-value=4.2e-20 Score=181.81 Aligned_cols=163 Identities=15% Similarity=0.241 Sum_probs=128.7
Q ss_pred CCChhHHHHHHHHHhcCCCCccceeccCCccccCC------C----C-----------------------------CCCC
Q psy7269 15 QWSSNARVICKAWLKDGLKPRCITRDLKWGIPVPL------P----G-----------------------------FENK 55 (235)
Q Consensus 15 ~~p~~~~~~~~~~l~~gL~Dw~ISR~~~WGIpvP~------~----~-----------------------------~~~~ 55 (235)
..|+..+....+|++ +..|||||||++||+.||. + + -+.+
T Consensus 438 i~P~~~~k~w~~W~~-~i~DWCiSRQLWWGHrIPAy~v~~~~~~~ee~~WvvarseeeA~ekaa~k~g~~~~~~L~qDpD 516 (995)
T KOG0432|consen 438 ILPEFHEKEWYRWLE-NIRDWCISRQLWWGHRIPAYFVNLSDGRAEEDYWVVARSEEEAREKAAEKFGPGKEFTLEQDPD 516 (995)
T ss_pred ECchHHHHHHHHHHh-hccccchhhhhhhccccceeeeecccCCCccceeEEeCCHHHHHHHHHHHhCCcccceeecCcc
Confidence 369999999999996 5999999999999999997 1 1 1478
Q ss_pred eEEEeccCccchhhcccccch---hhhhhcCCCCCCCceeEEEeecCCcchhhhHHHHHHHHhCCC--cccc-eeeeccc
Q psy7269 56 VFYVWFDAPIGYMSLTQSYCG---QYEAWWKSAPQSKITLYQFMAKDNVPFHSIMFPATLVAAGDQ--YTKV-NHIMATG 129 (235)
Q Consensus 56 viyVWfDa~~~yls~~~~~~~---~~~~~W~~~~~~~~~~v~fiGkDi~~Fhai~wpa~L~~~~~~--~~~p-~~i~~~G 129 (235)
|+|+||.|.+.++|+. |||+ |+..++|.+ +.=.|.||++| |.|.+.+.|.. -++| +.|+.||
T Consensus 517 VLDTWFSS~L~PfS~l-GWP~~t~d~~~fyP~s-------llETG~DILfF----WVaRMvmLg~kLtG~lPF~~V~LH~ 584 (995)
T KOG0432|consen 517 VLDTWFSSGLWPFSTL-GWPEETKDFKNFYPLS-------LLETGHDILFF----WVARMVMLGLKLTGELPFKEVLLHG 584 (995)
T ss_pred HHHhhhhcccccchhc-CCccccccHHhcCCch-------hhhcCchHHHH----HHHHHHHhhhhhcCCCCchheeech
Confidence 9999999999999986 9985 688888832 56679999999 99988877752 1344 7899997
Q ss_pred c-----------ccCCCCChHHHHh------------------------------hh-------hhHHHHHHhcCCCccc
Q psy7269 130 H-----------KIGTPAPLFRKIE------------------------------QA-------QVDEWKLKYGGQQSKE 161 (235)
Q Consensus 130 ~-----------kiGn~~~~~~~i~------------------------------~~-------~~d~lR~~f~G~~~~~ 161 (235)
. |+||+++|.+.|+ .| |.|+||+..
T Consensus 585 mVRDa~GRKMSKSLGNVIDPlDVI~Gisle~L~~~L~~gNLdp~Ev~~a~~gq~kdFPnGIpeCGtDALRFaL------- 657 (995)
T KOG0432|consen 585 LVRDAHGRKMSKSLGNVIDPLDVIDGISLEKLHAKLLSGNLDPREVEKAKKGQKKDFPNGIPECGTDALRFAL------- 657 (995)
T ss_pred hhccccccccchhhccccCHHHHhccccHHHHHHHHHcCCCCHHHHHHHHHHHHhhcCCCCcccchHHHHHHH-------
Confidence 4 6899999999997 34 667776522
Q ss_pred cccCcccccccCCCHhHHHHHHHHHHHhhhhHhhhhh
Q psy7269 162 SSNNKKETKQAEITFSSVEELEAAVATQGALLGTVDV 198 (235)
Q Consensus 162 l~~~~pe~~D~~fs~~~~~~~~~lv~~~GNlV~R~~~ 198 (235)
.+-...+.|.+++-..++..-..+|++.|.++=++.
T Consensus 658 -~s~~~~~~dInLDv~rv~g~r~FcNKlWNa~rF~l~ 693 (995)
T KOG0432|consen 658 -CSYTTQGRDINLDVLRVEGYRHFCNKLWNATRFALQ 693 (995)
T ss_pred -HHccccCccccccHHHHhhHHHHHHHHHHHHHHHHH
Confidence 222335578888888887777889999999884443
No 38
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=99.77 E-value=6.5e-19 Score=177.36 Aligned_cols=147 Identities=18% Similarity=0.174 Sum_probs=110.2
Q ss_pred CCCccceeccCCccccCC----C-C---------------------------------------------CCCCeEEEec
Q psy7269 32 LKPRCITRDLKWGIPVPL----P-G---------------------------------------------FENKVFYVWF 61 (235)
Q Consensus 32 L~Dw~ISR~~~WGIpvP~----~-~---------------------------------------------~~~~viyVWf 61 (235)
++||||||||+||+|||+ + | -+.+|++|||
T Consensus 415 l~DW~ISRQR~WG~PIPi~~~~~~g~~~v~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~re~Dv~Dtwf 494 (805)
T PRK00390 415 LRDWGISRQRYWGEPIPIIHCEDCGIVPVPEEDLPVVLPEDVVPDGTGSPLAKHPEWVNVTCPKCGKPARRETDTMDTFV 494 (805)
T ss_pred CCCccccccccCCCceeEEEECCCCceeCchHhhhhhhhhhcccCCCCChhhhchhhhCCCccccCCCceeCCccccccc
Confidence 789999999999999995 1 1 0357999999
Q ss_pred cCccchhhcccccc---------hhhhhhcCCCCCCCceeEEEeecCCcchhh---hHHHHHHHHhCC-Cc-ccceeeec
Q psy7269 62 DAPIGYMSLTQSYC---------GQYEAWWKSAPQSKITLYQFMAKDNVPFHS---IMFPATLVAAGD-QY-TKVNHIMA 127 (235)
Q Consensus 62 Da~~~yls~~~~~~---------~~~~~~W~~~~~~~~~~v~fiGkDi~~Fha---i~wpa~L~~~~~-~~-~~p~~i~~ 127 (235)
||. .|.+.. .++ ++++.|+|.| +++.|.|++.-|. .+|.+.|...|. +- .+++++++
T Consensus 495 dSs-w~~~~~-~~p~~~~~~~~~~~~~~~~P~D-------ly~~G~D~~i~hL~y~Rf~~~~l~~~~~~~~~~Pfk~v~~ 565 (805)
T PRK00390 495 GSS-WYYLRY-TDPHNDEAPFDKEAANYWLPVD-------QYIGGIEHAVLHLLYARFFTKVLRDLGLVSSDEPFKKLLT 565 (805)
T ss_pred ccc-cHHHHh-cCcccccCcCChHHhhCcCCCc-------EEeccHHHHHHHHHHHHHHHHHHHHhhcccCCcchhhhee
Confidence 996 444322 222 2456667854 8999999875443 457777776652 22 23489999
Q ss_pred ccc-----ccCCCCChHHHHhhhhhHHHHHHhcCCCccccccCcccccccCCCHhHHHHHHHHHHHhhhhHhh
Q psy7269 128 TGH-----KIGTPAPLFRKIEQAQVDEWKLKYGGQQSKESSNNKKETKQAEITFSSVEELEAAVATQGALLGT 195 (235)
Q Consensus 128 ~G~-----kiGn~~~~~~~i~~~~~d~lR~~f~G~~~~~l~~~~pe~~D~~fs~~~~~~~~~lv~~~GNlV~R 195 (235)
||+ |+||+++|.+.|++||+|++|+.. +..++.++|.+|+.+.+.+....++.+-|.++.
T Consensus 566 ~G~vKMSKS~GN~i~p~~~i~~ygaD~lRl~l--------~~~~~~~~d~~~s~~~l~~~~~~l~kl~~~~~~ 630 (805)
T PRK00390 566 QGMVKMSKSKGNVVDPDDIIEKYGADTARLFE--------MFAGPPEKDLEWSDSGVEGAYRFLQRVWRLVVD 630 (805)
T ss_pred cCcEEeCCCCCCCCCHHHHHHHcChHHHHHHH--------HhcCCccCCcccCHHHHHHHHHHHHHHHHHHHH
Confidence 997 689999999999999999999844 334566789999999988777777777777775
No 39
>KOG0433|consensus
Probab=99.70 E-value=7.6e-17 Score=156.73 Aligned_cols=175 Identities=14% Similarity=0.236 Sum_probs=117.1
Q ss_pred HHHHHHhCCCCCChhHHHHHHHHHhcCCCCccceeccCCccccCCC-----C----------------------------
Q psy7269 5 LQSWVSETSDQWSSNARVICKAWLKDGLKPRCITRDLKWGIPVPLP-----G---------------------------- 51 (235)
Q Consensus 5 L~e~~~~~~~~~p~~~~~~~~~~l~~gL~Dw~ISR~~~WGIpvP~~-----~---------------------------- 51 (235)
-.+-+++.+ +.|.+..+++..++. +.++|||||||.||+|||.- +
T Consensus 441 A~~al~~Vk-~~P~~~~~rl~~~~~-~R~~WCISRQR~WGvPIP~ly~k~~~~~l~ns~~~~h~~~~~eqeGsD~Ww~~~ 518 (937)
T KOG0433|consen 441 ASMALDDVK-VAPGDSDLRLKQLVT-TRPSWCISRQRVWGVPIPALYDKNGGSYLSNSLIEWHAKLTREQEGSDVWWEID 518 (937)
T ss_pred HHHHHhhce-eCCcchHHHHHHHHc-CCCcceeeeccccCCcceeEEecCCCceeehHHHHHHHHHHHHHhCCcceEeCC
Confidence 344555553 569999999999995 79999999999999999981 0
Q ss_pred ---------------------CCCCeEEEeccCccchhhcccccchhhhhhcCCCCCCCceeEEEeecCCcc--hhhhHH
Q psy7269 52 ---------------------FENKVFYVWFDAPIGYMSLTQSYCGQYEAWWKSAPQSKITLYQFMAKDNVP--FHSIMF 108 (235)
Q Consensus 52 ---------------------~~~~viyVWfDa~~~yls~~~~~~~~~~~~W~~~~~~~~~~v~fiGkDi~~--Fhai~w 108 (235)
-..+++|||||+....-+.. +. + + +..-.++++|.||.+ |.+.
T Consensus 519 ~eellpe~~~~e~~~~a~ey~kgtDimDVWFDSGssWs~v~-~~----~---~----~~~aDv~LEG~DQ~rGWFQSs-- 584 (937)
T KOG0433|consen 519 VEELLPEEEVREIPDIASEYKKGTDIMDVWFDSGSSWSAVL-DN----E---R----EHVADVYLEGVDQFRGWFQSS-- 584 (937)
T ss_pred hhHhCcHhhhcccchhHHHhccCCceeeeEecCCCcceeec-CC----C---C----CcceeeEEecchhcchHHHHH--
Confidence 02468899999876543332 11 1 0 111228999999996 4443
Q ss_pred HHHHHHhCC-Ccccceeeecccc-----------ccCCCCChHHHHhh------hhhHHHHHHhcCCCccccccCccccc
Q psy7269 109 PATLVAAGD-QYTKVNHIMATGH-----------KIGTPAPLFRKIEQ------AQVDEWKLKYGGQQSKESSNNKKETK 170 (235)
Q Consensus 109 pa~L~~~~~-~~~~p~~i~~~G~-----------kiGn~~~~~~~i~~------~~~d~lR~~f~G~~~~~l~~~~pe~~ 170 (235)
+|+.... ...+++.+++||| |+||+++|...++. ||+|.+|+--+++. ...
T Consensus 585 --LLTsvA~q~kAPYk~vivHGFtlDE~G~KMSKSlGNVidP~~v~~G~~k~payGaD~LR~WVA~~~---------~t~ 653 (937)
T KOG0433|consen 585 --LLTSVAVQNKAPYKKVIVHGFTLDENGNKMSKSLGNVVDPTMVTDGSLKQPAYGADGLRFWVAGSE---------NTG 653 (937)
T ss_pred --HHHHHHHhccCCchheeeeeeEecCCccchhhcccCcCCHHHHhCCcccCCCccccceeeeeeccc---------ccC
Confidence 3332211 1345689999998 68999999999988 99999997323221 234
Q ss_pred ccCCCHhHHHHHHHHHHHhhhhHhhhhhhhhccccc
Q psy7269 171 QAEITFSSVEELEAAVATQGALLGTVDVIVMSSRTG 206 (235)
Q Consensus 171 D~~fs~~~~~~~~~lv~~~GNlV~R~~~~~~~~~~~ 206 (235)
|...+..-+.+.-|.+-++-|-.|=+++-+...+.+
T Consensus 654 d~~iGp~il~qv~e~l~K~R~T~RfllGnl~d~~~~ 689 (937)
T KOG0433|consen 654 ESKIGPKILDQVDEKLIKFRNTFRFLLGNLQDFDGK 689 (937)
T ss_pred ceecCHHHHHHHHHHHHHHHhHHHHHhhcccccCCc
Confidence 555566666666666666666666566655555555
No 40
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=99.67 E-value=7.9e-17 Score=162.94 Aligned_cols=154 Identities=14% Similarity=0.160 Sum_probs=108.7
Q ss_pred CCCCccceeccCCccccCC---C--C----------------------------------------------CCCCeEEE
Q psy7269 31 GLKPRCITRDLKWGIPVPL---P--G----------------------------------------------FENKVFYV 59 (235)
Q Consensus 31 gL~Dw~ISR~~~WGIpvP~---~--~----------------------------------------------~~~~viyV 59 (235)
.|+||||||||+||+|||+ + + -+.+|++|
T Consensus 410 rlrDW~ISRQRyWG~PIPi~~~~~~g~~~v~~~~lp~~l~~~~~~~~~~~~pl~~~~~~~~~~cp~cg~~~~retDtmDt 489 (842)
T TIGR00396 410 RLRDWLFSRQRYWGEPIPIIHCEDGGAVPVPEEDLPVILPELVNYDPDGNSPLSRIQEWVNVTCPSCGKPALRETDTMDT 489 (842)
T ss_pred ecccceeecccccCCceEEEEECCCCeEeCcchhcchhhhhhhhccCCCCCchhhhhhhhcCcCccCCCCcEeCCCCCCC
Confidence 4889999999999999998 1 1 02468999
Q ss_pred eccCccchhhcc----cccc---hhhhhhcCCCCCCCceeEEEeecCCcchh---hhHHHHHHHHhCC-Cc-ccceeeec
Q psy7269 60 WFDAPIGYMSLT----QSYC---GQYEAWWKSAPQSKITLYQFMAKDNVPFH---SIMFPATLVAAGD-QY-TKVNHIMA 127 (235)
Q Consensus 60 WfDa~~~yls~~----~~~~---~~~~~~W~~~~~~~~~~v~fiGkDi~~Fh---ai~wpa~L~~~~~-~~-~~p~~i~~ 127 (235)
||||..-|+... .+++ +++..++|.| +++.|.|++..| +.+|-..|...+. +- .+++.+++
T Consensus 490 w~dSswy~~r~~~p~~~~~~~~~~~~~~~~PvD-------~yi~G~dhailHLlyaRf~~~~l~~~~~~~~~~Pfk~l~~ 562 (842)
T TIGR00396 490 FAGSSWYYLRYLDPKNTDQPFDKEKAEYWLPVD-------LYIGGAEHAILHLLYARFWHKFLYDIGYVSTKEPFKKLIN 562 (842)
T ss_pred cccCCHHHHHhhCCCCcCCCcChHHHhccCCCc-------EeeccHHHHHHHHHHHHHHHHHHHhccccCCCccHHHHhc
Confidence 999873333211 0111 2344556753 899999997544 4447777776553 21 23467777
Q ss_pred ccc------------------------------------------ccCCCCChHHHHhhhhhHHHHHHhcCCCccccccC
Q psy7269 128 TGH------------------------------------------KIGTPAPLFRKIEQAQVDEWKLKYGGQQSKESSNN 165 (235)
Q Consensus 128 ~G~------------------------------------------kiGn~~~~~~~i~~~~~d~lR~~f~G~~~~~l~~~ 165 (235)
||+ |+||++.|.+.|++||+|++|+.+ +..
T Consensus 563 ~G~Vl~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~KMSKS~GN~v~p~~ii~~ygaDalRl~~--------l~~ 634 (842)
T TIGR00396 563 QGMVLGFYYPPNGKSPPDELTERDEKAKDKSGGELVVVGYEKMSKSKGNGIDPQEIVKKHGADALRLYI--------MFM 634 (842)
T ss_pred cceEEeeeecCCCCccChhhhccccccccccCCcccccchhhhhhcCCCcCCHHHHHHHcCchHHHHHH--------Hhc
Confidence 763 278999999999999999999844 333
Q ss_pred cccccccCCCHhHHHHHHHHHHHhhhhHhhhhhh
Q psy7269 166 KKETKQAEITFSSVEELEAAVATQGALLGTVDVI 199 (235)
Q Consensus 166 ~pe~~D~~fs~~~~~~~~~lv~~~GNlV~R~~~~ 199 (235)
++..+|.+++.+.+....+.++.+-|+++.+...
T Consensus 635 ~~~~~d~~~~~~~l~~~~~~l~kl~~~~~~~~~~ 668 (842)
T TIGR00396 635 GPIAASLEWNDSGLEGARRFLDRVWNLFYNILGE 668 (842)
T ss_pred CCcCCCCccCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4456899999999988778888888888876443
No 41
>PLN02563 aminoacyl-tRNA ligase
Probab=99.65 E-value=2.4e-16 Score=160.90 Aligned_cols=159 Identities=16% Similarity=0.218 Sum_probs=105.9
Q ss_pred hHHHHHHHHHhcC----------CCCccceeccCCccccCC---C--C------C-------------------------
Q psy7269 19 NARVICKAWLKDG----------LKPRCITRDLKWGIPVPL---P--G------F------------------------- 52 (235)
Q Consensus 19 ~~~~~~~~~l~~g----------L~Dw~ISR~~~WGIpvP~---~--~------~------------------------- 52 (235)
.+++.+.++|++. |+||||||||+||+|||+ + | .
T Consensus 481 eA~~~Ii~~L~~~g~~~~~v~y~lrDW~ISRQRyWG~PIPi~~c~~cg~~v~v~e~~Lpv~lpe~~~~~~~~~g~~pl~~ 560 (963)
T PLN02563 481 EAAKKVIEWLEETGNGKKKVNYKLRDWLFARQRYWGEPIPVVFLEDSGEPVPVPESDLPLTLPELDDFTPTGTGEPPLAK 560 (963)
T ss_pred HHHHHHHHHHHhCCCCCCeeEecCCCceEeeecccCCceEEEEEcCCCcEEecchHhCcccchhhhhcccCCCCCCchhc
Confidence 4566666666543 899999999999999998 1 1 0
Q ss_pred ------------------CCCeEEEeccCccchhhcccccch--------hh-hhhcCCCCCCCceeEEEeecCCcchh-
Q psy7269 53 ------------------ENKVFYVWFDAPIGYMSLTQSYCG--------QY-EAWWKSAPQSKITLYQFMAKDNVPFH- 104 (235)
Q Consensus 53 ------------------~~~viyVWfDa~~~yls~~~~~~~--------~~-~~~W~~~~~~~~~~v~fiGkDi~~Fh- 104 (235)
+.+++++||+|..-|+... +++ +. ..|+|.| +++.|.||+-.|
T Consensus 561 ~~~~~~~~~p~cg~~~~RetDtmDtw~~Sswy~~r~~--~p~~~~~~~~~~~~~~w~PvD-------~yigG~dhailHL 631 (963)
T PLN02563 561 AVSWVNTVDPSSGKPARRETNTMPQWAGSCWYYLRFM--DPKNSNALVDKEKEKYWMPVD-------LYVGGAEHAVLHL 631 (963)
T ss_pred chhhhcCcCcCCCCCcEECCCcCCchhhccHHHHHHh--CCCccccccCHHHHhCcCCCc-------EeeccHHHHhhHh
Confidence 1357899999964444321 221 12 2345643 899999997555
Q ss_pred --hhHHHHHHHHhCC-C-cccceeeecccc--------------------------------------------------
Q psy7269 105 --SIMFPATLVAAGD-Q-YTKVNHIMATGH-------------------------------------------------- 130 (235)
Q Consensus 105 --ai~wpa~L~~~~~-~-~~~p~~i~~~G~-------------------------------------------------- 130 (235)
+.+|...|+..|. . ..+++++++||+
T Consensus 632 lY~Rfw~~~l~~~g~~~~~ePfk~ll~qGmVl~~~~~~~~~d~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 711 (963)
T PLN02563 632 LYARFWHKVLYDIGVVSTKEPFQCLVNQGMILGEVEYTAFKDSDGEYVSADTADRLGELQQEKIPEEKVIKSGDSFVLKD 711 (963)
T ss_pred HHHHHHHHHHHHhhccCCcccHHHHhccceeecCccccceecCCCcCccccccccccccccccccccccccccccccccc
Confidence 4458877776663 1 123356666552
Q ss_pred ---------------ccCCCCChHHHHhhhhhHHHHHHhcCCCccccccCcccccccCCCHhHHHHHHHHHHHhhhhHh
Q psy7269 131 ---------------KIGTPAPLFRKIEQAQVDEWKLKYGGQQSKESSNNKKETKQAEITFSSVEELEAAVATQGALLG 194 (235)
Q Consensus 131 ---------------kiGn~~~~~~~i~~~~~d~lR~~f~G~~~~~l~~~~pe~~D~~fs~~~~~~~~~lv~~~GNlV~ 194 (235)
|+||+++|.+.|++||+|++|++ ++..+|..+|..++.+.+......++.+-|++.
T Consensus 712 ~~~~~~~~~~eKMSKSKGNvVdP~eiI~kYGADaLRl~--------ll~~ap~~dd~~w~~~~V~g~~rfL~rlwn~~~ 782 (963)
T PLN02563 712 DPSIRLIARAHKMSKSRGNVVNPDDVVSEYGADSLRLY--------EMFMGPLRDSKTWSTSGVEGVHRFLGRTWRLVV 782 (963)
T ss_pred CCcccccccccccccccCCcCCHHHHHHHcCcHHHHHH--------HHhCCCcccccccCHHHHHHHHHHHHHHHHHHH
Confidence 37899999999999999999983 344556777887886666554455555555544
No 42
>KOG0434|consensus
Probab=99.47 E-value=4.2e-14 Score=137.13 Aligned_cols=167 Identities=16% Similarity=0.301 Sum_probs=113.3
Q ss_pred HHHhCCC-CC-ChhH-HHHHHHHHhcCCCCccceeccCCccccCC---CCC-----------------------------
Q psy7269 8 WVSETSD-QW-SSNA-RVICKAWLKDGLKPRCITRDLKWGIPVPL---PGF----------------------------- 52 (235)
Q Consensus 8 ~~~~~~~-~~-p~~~-~~~~~~~l~~gL~Dw~ISR~~~WGIpvP~---~~~----------------------------- 52 (235)
.++++.. .| |+.. .+|+.+||++ .+||+|||+|.||.|||. |++
T Consensus 427 ll~nn~~t~WVP~~ikeKRF~NWL~n-ARDW~iSRnR~WGTPIpLWVSdD~eevVcigSi~eLEeLSG~kItDlHRe~iD 505 (1070)
T KOG0434|consen 427 LLRNNMKTHWVPQNIKEKRFANWLKN-ARDWNISRNRYWGTPIPLWVSDDYEEVVCIGSIKELEELSGVKITDLHRESID 505 (1070)
T ss_pred HHhcccccccCChhhhHHHHHHHHhh-hhhcccccccccCCCcceEEccCCceEEEeccHHHHHHhcCCcchhhhhhhcC
Confidence 3444433 47 7777 5799999974 899999999999999998 110
Q ss_pred ---------------CCCeEEEeccCccchhhcccccc----hhhhhhcCCCCCCCceeEEEeecCCcc--hhhhHHHHH
Q psy7269 53 ---------------ENKVFYVWFDAPIGYMSLTQSYC----GQYEAWWKSAPQSKITLYQFMAKDNVP--FHSIMFPAT 111 (235)
Q Consensus 53 ---------------~~~viyVWfDa~~~yls~~~~~~----~~~~~~W~~~~~~~~~~v~fiGkDi~~--Fhai~wpa~ 111 (235)
-..|++.||++..-+++. ..|| +.+++-.|++ ..-.|-||++ |+++.--+.
T Consensus 506 ~itIps~~gkg~l~Rv~eVfDCWFESGSMPYAq-~HyPFenk~~fe~~fPad-------FIaEGlDQTRGWFYTL~VlsT 577 (1070)
T KOG0434|consen 506 HITIPSKKGKGVLHRVSEVFDCWFESGSMPYAQ-RHYPFENKEEFEENFPAD-------FIAEGLDQTRGWFYTLLVLST 577 (1070)
T ss_pred ceecccCCCCcceehhhhHhhhhhccCCCcchh-hcCCccchHHHhhcCchH-------hhhhccccccchhhHHHHHHH
Confidence 135889999998876655 4776 3577778853 5556999996 554443333
Q ss_pred HHHhCCCcccceeeecccc-----------ccCCCCChHHHHhhhhhHHHHHHhcCCCccccccCcccccccCCCHhHHH
Q psy7269 112 LVAAGDQYTKVNHIMATGH-----------KIGTPAPLFRKIEQAQVDEWKLKYGGQQSKESSNNKKETKQAEITFSSVE 180 (235)
Q Consensus 112 L~~~~~~~~~p~~i~~~G~-----------kiGn~~~~~~~i~~~~~d~lR~~f~G~~~~~l~~~~pe~~D~~fs~~~~~ 180 (235)
++-. ..++++++++|- ++.|--+|...|++||+|++|++.-.+.. -......|..+.+.
T Consensus 578 ~LF~---kppfkNvIvnGlVLAeDG~KMSKrlkNYPdP~~iinkYGADalRlYLInSPV-------vraE~LkFkeeGVr 647 (1070)
T KOG0434|consen 578 ALFG---KPPFKNVIVNGLVLAEDGKKMSKRLKNYPDPSLIINKYGADALRLYLINSPV-------VRAENLKFKEEGVR 647 (1070)
T ss_pred HHcC---CCcchheeEeeeEEecccHHHhhhhhcCCCHHHHHHhhcchheeeeeecCcc-------ccccccccchhhHH
Confidence 3332 234589999985 35677789999999999999985533221 12234668888887
Q ss_pred HHH-HHHHHhhhhH
Q psy7269 181 ELE-AAVATQGALL 193 (235)
Q Consensus 181 ~~~-~lv~~~GNlV 193 (235)
++. +..=.+-|-.
T Consensus 648 evvk~v~lPW~Nsy 661 (1070)
T KOG0434|consen 648 EVVKDVLLPWYNSY 661 (1070)
T ss_pred HHHHhhhhhhhHHH
Confidence 755 4444444433
No 43
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.07 E-value=1.4e-10 Score=116.43 Aligned_cols=153 Identities=16% Similarity=0.210 Sum_probs=104.0
Q ss_pred CCCCccceeccCCccccCCC--C----------------------------------------------CCCCeEEEecc
Q psy7269 31 GLKPRCITRDLKWGIPVPLP--G----------------------------------------------FENKVFYVWFD 62 (235)
Q Consensus 31 gL~Dw~ISR~~~WGIpvP~~--~----------------------------------------------~~~~viyVWfD 62 (235)
.|+||.+||||+||.|+|+- + -+..++..|++
T Consensus 418 ~lrdW~~srqRywg~pipii~~e~~~~~~~~~d~Lpv~lp~~~~~~gt~~pL~~~~~W~~~s~~~s~~~ret~Tm~~~~~ 497 (814)
T COG0495 418 RLRDWLKSRQRYWGEPIPIIHCEDCGVVPVPEDWLPVKLPERVRGLGTGSPLPWDEEWVIESLPDSTAYRETDTMDTFID 497 (814)
T ss_pred ccchHHHHHHHHhCCCcceeEcccCCcccCchHhcCcccccccccCCCCCCCCCCcceEEEecCCCceeeehhhhhHhcc
Confidence 58899999999999999981 0 02346666777
Q ss_pred Cccchhhcc----c-ccc---hhhhhhcCCCCCCCceeEEEeecCCcchhhhH---HHHHHHHhCC-Ccc-cceeeeccc
Q psy7269 63 APIGYMSLT----Q-SYC---GQYEAWWKSAPQSKITLYQFMAKDNVPFHSIM---FPATLVAAGD-QYT-KVNHIMATG 129 (235)
Q Consensus 63 a~~~yls~~----~-~~~---~~~~~~W~~~~~~~~~~v~fiGkDi~~Fhai~---wpa~L~~~~~-~~~-~p~~i~~~G 129 (235)
+..=|+-.. . +.+ +.+..|.|-| .++-|+|++--|.+| |-..|...|. |.. ++++++++|
T Consensus 498 sswy~~r~~d~~~~~~~~~~~e~~~yW~PVD-------~yigG~ehavlHLly~rF~Hkal~d~g~~p~~epf~~L~~qG 570 (814)
T COG0495 498 SSWYYLRFFDPIFLGELPFDREEFNYWYPVD-------LYIGGIEHAVLHLLYFRFFHKALFDEGLVPKDEPFKKLITQG 570 (814)
T ss_pred cccccHhhcChhcCccchhcHHHHhcccChh-------eeecchhHHHHHHHHHHHHHHHhcccCcCCCccchhhhhccc
Confidence 762211111 0 001 1233344532 789999999877655 5555555554 211 234588877
Q ss_pred c-----------ccCCCCChHHHHhhhhhHHHHHHhcCCCccccccCcccccccCCCHhHHHHHHHHHHHhhhhHhhhhh
Q psy7269 130 H-----------KIGTPAPLFRKIEQAQVDEWKLKYGGQQSKESSNNKKETKQAEITFSSVEELEAAVATQGALLGTVDV 198 (235)
Q Consensus 130 ~-----------kiGn~~~~~~~i~~~~~d~lR~~f~G~~~~~l~~~~pe~~D~~fs~~~~~~~~~lv~~~GNlV~R~~~ 198 (235)
+ |.||+++|.+.|++||+|++|++ ++..+|..+|.+++.+.+....+.++.+-|++.+..+
T Consensus 571 mVl~~~g~KMSKSKgN~v~p~~~i~~yGADt~Rl~--------~m~~ap~~~d~~W~e~gv~g~~rfL~r~~~l~~~~~~ 642 (814)
T COG0495 571 MVLGEEGEKMSKSKGNVVDPEEAVEKYGADTVRLY--------IMFAAPPEQDLEWSESGVEGARRFLQRVWNLVKEHLE 642 (814)
T ss_pred eEEecCCCccccccCCCCCHHHHHHHhCchHHHHH--------HHhhCChhhCCCCChhhhHHHHHHHHHHHHHHHHhhh
Confidence 6 57899999999999999999983 3445667789999998888877777777777776654
No 44
>KOG0435|consensus
Probab=98.98 E-value=5e-10 Score=109.00 Aligned_cols=155 Identities=15% Similarity=0.138 Sum_probs=104.3
Q ss_pred CCCCccceeccCCccccCC---C--C---------------------------------------------CCCCeEEEe
Q psy7269 31 GLKPRCITRDLKWGIPVPL---P--G---------------------------------------------FENKVFYVW 60 (235)
Q Consensus 31 gL~Dw~ISR~~~WGIpvP~---~--~---------------------------------------------~~~~viyVW 60 (235)
.|+||-|||||+||.|||+ + | .|.+++++|
T Consensus 418 kLkDWLiSRQRyWGTPIPivhc~~cG~vpVpes~LPV~LP~l~~~~~kG~Pls~~~e~vn~~cP~cg~pAkRETDTMDTF 497 (876)
T KOG0435|consen 418 KLKDWLISRQRYWGTPIPIVHCDDCGAVPVPESELPVTLPELNDFTPKGPPLSKADEWVNVDCPRCGEPAKRETDTMDTF 497 (876)
T ss_pred hhhhhhhhhhhccCCCcceEEcCCCCcccCcHHHCCcccccccccCCCCCcccchhhheeccCccCCCcccccccccchh
Confidence 4889999999999999998 1 0 257899999
Q ss_pred ccCccchhhccccc-c-----hhhhhhcCCCCCCCceeEEEeecCCcchhhhH---HHHHHHHhCCC--cccceeeeccc
Q psy7269 61 FDAPIGYMSLTQSY-C-----GQYEAWWKSAPQSKITLYQFMAKDNVPFHSIM---FPATLVAAGDQ--YTKVNHIMATG 129 (235)
Q Consensus 61 fDa~~~yls~~~~~-~-----~~~~~~W~~~~~~~~~~v~fiGkDi~~Fhai~---wpa~L~~~~~~--~~~p~~i~~~G 129 (235)
+|+..=|+-.+..- + ....++|-+. + +++-|+.+.-.|.+| |--+|...|+- -.+++.+++.|
T Consensus 498 vDSsWYYlRylDpkN~e~~~d~a~a~k~MPV---D---vYIGG~EHAvlHLlYaRF~~kFl~di~~~~t~EPF~~Li~QG 571 (876)
T KOG0435|consen 498 VDSSWYYLRYLDPKNPEEPFDKAKAKKNMPV---D---VYIGGKEHAVLHLLYARFIAKFLKDIGVVSTAEPFTKLITQG 571 (876)
T ss_pred hccceeeEeecCCCCcccccchhhhhccCce---e---EEeccHHHHHHHHHHHHHHHHHHhhcCCCcCCCcHHHHHhhh
Confidence 99987665433110 1 1223444321 2 899999997655444 66677777651 01223333333
Q ss_pred c------------------------------------------------ccCCCCChHHHHhhhhhHHHHHHhcCCCccc
Q psy7269 130 H------------------------------------------------KIGTPAPLFRKIEQAQVDEWKLKYGGQQSKE 161 (235)
Q Consensus 130 ~------------------------------------------------kiGn~~~~~~~i~~~~~d~lR~~f~G~~~~~ 161 (235)
. |.+|.++|.+.+++||+|..|++
T Consensus 572 mV~G~tf~~~~sG~yl~~~ev~~~nd~~~~~vlk~~~e~~v~t~eKMSKSK~NGVdP~~~v~~yG~D~tRl~-------- 643 (876)
T KOG0435|consen 572 MVRGKTFRTKESGKYLGPEEVQQVNDHQNKFVLKNDKEVVVVTYEKMSKSKHNGVDPADVVLEYGVDTTRLY-------- 643 (876)
T ss_pred cccceEEecCCCCccCCHHHhhhhcCCcceeEecCCCcceeeeHHHhhhcccCCCCHHHHHHHhCchHHHHH--------
Confidence 1 46788999999999999999983
Q ss_pred cccCcccccccCCCHhHHHHHHHHHHHhhhhHhhhhhh
Q psy7269 162 SSNNKKETKQAEITFSSVEELEAAVATQGALLGTVDVI 199 (235)
Q Consensus 162 l~~~~pe~~D~~fs~~~~~~~~~lv~~~GNlV~R~~~~ 199 (235)
+.-.+|..++.+.+...+.......+.+.++++++...
T Consensus 644 ilf~ap~~~~~nW~es~i~Gi~rwl~riw~l~~~~~~a 681 (876)
T KOG0435|consen 644 ILFAAPPRDPINWNESAIPGIKRWLQRIWALVSQILQA 681 (876)
T ss_pred HHhhCCcccccccccccchhHHHHHHHHHHHHHHHHHH
Confidence 33344555666677677777777788888888866643
No 45
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=98.82 E-value=2.8e-09 Score=105.61 Aligned_cols=144 Identities=13% Similarity=0.041 Sum_probs=86.6
Q ss_pred CCCcc-cee-ccC---CccccCCCCCCCCeEEEeccCccchhhcccccchh---h-hhhcCCCCCCCceeEEEeecCCcc
Q psy7269 32 LKPRC-ITR-DLK---WGIPVPLPGFENKVFYVWFDAPIGYMSLTQSYCGQ---Y-EAWWKSAPQSKITLYQFMAKDNVP 102 (235)
Q Consensus 32 L~Dw~-ISR-~~~---WGIpvP~~~~~~~viyVWfDa~~~yls~~~~~~~~---~-~~~W~~~~~~~~~~v~fiGkDi~~ 102 (235)
+.|-+ ++| +.+ ||++.|.+ +. |. ++.|+ +-.+|.-+ . .++... +- .+|--|.|.++
T Consensus 216 l~~~~~~Kr~~~DFaLWk~~kpge--p~-----W~-SpwG~--GrPGWHiECsam~~~~lg~--~~---DIh~gG~DL~F 280 (651)
T PTZ00399 216 LGKVSGEKRSPNDFALWKASKPGE--PS-----WD-SPWGK--GRPGWHIECSAMASNILGD--PI---DIHSGGIDLKF 280 (651)
T ss_pred ccccCcCCCCCccHHhhCCCCCCC--CC-----CC-CCCCC--CCCCchHHHHHHHHHHcCC--cc---eeeccCCCCCC
Confidence 55665 899 566 99999965 22 64 77776 22233210 0 111110 01 15666666665
Q ss_pred hhhhHHHHHHHHh-CCCcccceeeecc-cc----------ccCCCCChHHHHhhhhhHHHHHHhcCCCccccccCccccc
Q psy7269 103 FHSIMFPATLVAA-GDQYTKVNHIMAT-GH----------KIGTPAPLFRKIEQAQVDEWKLKYGGQQSKESSNNKKETK 170 (235)
Q Consensus 103 Fhai~wpa~L~~~-~~~~~~p~~i~~~-G~----------kiGn~~~~~~~i~~~~~d~lR~~f~G~~~~~l~~~~pe~~ 170 (235)
-|-=-=-|.-.+. |. ....++++| || |+||++.+.+.|++|++|++|+.+ +. .+..+
T Consensus 281 PHHeNEiAQseA~~~~--~~~v~y~~H~G~L~i~G~KMSKSLGNfItp~dlLekygaDaLR~~l--------Ls-~~~~~ 349 (651)
T PTZ00399 281 PHHDNELAQSEAYFDK--HQWVNYFLHSGHLHIKGLKMSKSLKNFITIRQALSKYTARQIRLLF--------LL-HKWDK 349 (651)
T ss_pred CcchhHHHHHHHhhCC--CCCCcEEEEEEEEEeccchhhhcCCCcccHHHHHHHcChHHHHHHH--------Hh-cCCCC
Confidence 5511111111111 11 011256666 76 689999999999999999999955 22 25678
Q ss_pred ccCCCHhHHHHHHHHHHHhhhhHhhhhhhhh
Q psy7269 171 QAEITFSSVEELEAAVATQGALLGTVDVIVM 201 (235)
Q Consensus 171 D~~fs~~~~~~~~~lv~~~GNlV~R~~~~~~ 201 (235)
|.+|+++.+.+.....+.+.|.+.|+..++.
T Consensus 350 dldFS~e~l~~a~~~~~~l~n~~~rl~s~l~ 380 (651)
T PTZ00399 350 PMNYSDESMDEAIEKDKVFFNFFANVKIKLR 380 (651)
T ss_pred CCccCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999988876555667777777766543
No 46
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional
Probab=98.15 E-value=1.4e-05 Score=77.07 Aligned_cols=131 Identities=16% Similarity=0.141 Sum_probs=86.1
Q ss_pred CCCCccceeccCCccccCCCCCCCCeEEEeccCccchhhcccccchhhhhhcCCCCCCCceeEEEeecCCcchhhhHHHH
Q psy7269 31 GLKPRCITRDLKWGIPVPLPGFENKVFYVWFDAPIGYMSLTQSYCGQYEAWWKSAPQSKITLYQFMAKDNVPFHSIMFPA 110 (235)
Q Consensus 31 gL~Dw~ISR~~~WGIpvP~~~~~~~viyVWfDa~~~yls~~~~~~~~~~~~W~~~~~~~~~~v~fiGkDi~~Fhai~wpa 110 (235)
++++.+++++..||..-|. | .+.+.+.+ .++... +. .+|..|+|++++|--..+|
T Consensus 199 ~~~~~~~~W~SpWG~GRPG----------W---HIECsaMs-------~~~lg~----~~-DIH~GG~DliFPHHeneiA 253 (490)
T PRK14536 199 KFENHALTWDSPWGRGYPG----------W---HIECSAMS-------MKYLGE----QC-DIHIGGVDHIRVHHTNEIA 253 (490)
T ss_pred CCCCCCCcccCCCCCCCCC----------h---HHHHHHHH-------HHHcCC----ce-eEEeccccCCCcchhhHHH
Confidence 3455567788888887772 4 22222222 223221 11 3999999999999999999
Q ss_pred HHHHhCCCcccceeeecccc----------ccCCCCChHHHHhh-hhhHHHHHHhcCCCccccccCcccccccCCCHhHH
Q psy7269 111 TLVAAGDQYTKVNHIMATGH----------KIGTPAPLFRKIEQ-AQVDEWKLKYGGQQSKESSNNKKETKQAEITFSSV 179 (235)
Q Consensus 111 ~L~~~~~~~~~p~~i~~~G~----------kiGn~~~~~~~i~~-~~~d~lR~~f~G~~~~~l~~~~pe~~D~~fs~~~~ 179 (235)
+..+... ...++..+.+|| |+||.+.+.+.+++ ++++++|+.+. ..+..++.+|+++.+
T Consensus 254 qs~a~~g-~~~~~~w~h~g~l~~~g~KMSKSlGN~itl~dll~~g~~~~alR~~ll---------s~~yr~~l~Fs~e~l 323 (490)
T PRK14536 254 QCEAATG-KPWVRYWLHHEFLLMNKGKMSKSAGQFLTLSSLQEKGFQPLDYRFFLL---------GGHYRSQLAFSWEAL 323 (490)
T ss_pred HHHHhcC-CCcceEEEEcCEEeecCccccccCCCcccHHHHHhcCCCHHHHHHHHH---------hCCCCCCCCCCHHHH
Confidence 9988532 234455555555 46777778888998 99999998552 134668899999998
Q ss_pred HHHHHHHHHhhhhHhhh
Q psy7269 180 EELEAAVATQGALLGTV 196 (235)
Q Consensus 180 ~~~~~lv~~~GNlV~R~ 196 (235)
.+-....+.+-|.+.++
T Consensus 324 ~~a~~~~~rl~~~~~~~ 340 (490)
T PRK14536 324 KTAKAARRSLVRRVARV 340 (490)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 87555444444444443
No 47
>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional
Probab=98.04 E-value=3.2e-05 Score=74.43 Aligned_cols=94 Identities=11% Similarity=-0.026 Sum_probs=69.4
Q ss_pred EEEeecCCcchhhhHHHHHHHHhCCCcccceeeecccc----------ccCCCCChHHHHhh-hhhHHHHHHhcCCCccc
Q psy7269 93 YQFMAKDNVPFHSIMFPATLVAAGDQYTKVNHIMATGH----------KIGTPAPLFRKIEQ-AQVDEWKLKYGGQQSKE 161 (235)
Q Consensus 93 v~fiGkDi~~Fhai~wpa~L~~~~~~~~~p~~i~~~G~----------kiGn~~~~~~~i~~-~~~d~lR~~f~G~~~~~ 161 (235)
+|..|+|++++|-...+|+..+... .++++..+-+|| |+||.+.+.+.+++ ++++++|+.+.
T Consensus 236 IH~GG~DliFPHHene~Aqs~a~~g-~~~~~~W~H~g~l~~~g~KMSKSlGN~i~l~dll~~~~~~~alR~~ll------ 308 (481)
T PRK14534 236 IHLGGVDHIGVHHINEIAIAECYLN-KKWCDMFVHGEFLIMEYEKMSKSNNNFITIKDLEDQGFSPLDFRYFCL------ 308 (481)
T ss_pred EEecccccCCCcchhHHHHHhhhcC-CCcceEEEEecEEEecCceecccCCCcccHHHHHhcCCChhHHHHHHH------
Confidence 9999999999999999999988532 345566666665 46777777788886 99999998542
Q ss_pred cccCcccccccCCCHhHHHHHHHHHHHhhhhHhhh
Q psy7269 162 SSNNKKETKQAEITFSSVEELEAAVATQGALLGTV 196 (235)
Q Consensus 162 l~~~~pe~~D~~fs~~~~~~~~~lv~~~GNlV~R~ 196 (235)
..+..++.+|+++.+.+-...++.+-+.++++
T Consensus 309 ---s~~yr~~l~Fs~e~l~~a~~~~~~~~~~~~~~ 340 (481)
T PRK14534 309 ---TAHYRTQLKFTFNNLKACKIARENMLNKLTYF 340 (481)
T ss_pred ---hCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 23566889999999987654445544444443
No 48
>TIGR00435 cysS cysteinyl-tRNA synthetase. This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln).
Probab=97.70 E-value=0.00018 Score=69.06 Aligned_cols=97 Identities=12% Similarity=-0.038 Sum_probs=74.0
Q ss_pred EEEeecCCcchhhhHHHHHHHHhCCCcccceeeecccc----------ccCCCCChHHHHhhhhhHHHHHHhcCCCcccc
Q psy7269 93 YQFMAKDNVPFHSIMFPATLVAAGDQYTKVNHIMATGH----------KIGTPAPLFRKIEQAQVDEWKLKYGGQQSKES 162 (235)
Q Consensus 93 v~fiGkDi~~Fhai~wpa~L~~~~~~~~~p~~i~~~G~----------kiGn~~~~~~~i~~~~~d~lR~~f~G~~~~~l 162 (235)
+|.-|.|+++.|--...|+-.+... ...++.++.+|+ |+||++.+.+.++++++|++|+.+
T Consensus 222 ih~gG~Dl~fpHhene~aqs~a~~g-~~~~~~~~h~g~v~~~g~KMSKS~GN~i~~~dll~~~~~dalR~~l-------- 292 (465)
T TIGR00435 222 IHGGGVDLIFPHHENEIAQSEAAFG-KQLAKYWMHNGFLMIDNEKMSKSLGNFFTVRDVLKNYDPEILRYFL-------- 292 (465)
T ss_pred eeccccccccchHHHHHHHHHHhcC-CCCCcEEEEeeEEEecCccccccCCCcCCHHHHHHHCCHHHHHHHH--------
Confidence 8999999999999999998776432 222343344444 578888899999999999999855
Q ss_pred ccCcccccccCCCHhHHHHHHHHHHHhhhhHhhhhhh
Q psy7269 163 SNNKKETKQAEITFSSVEELEAAVATQGALLGTVDVI 199 (235)
Q Consensus 163 ~~~~pe~~D~~fs~~~~~~~~~lv~~~GNlV~R~~~~ 199 (235)
++ .+..++.+|+++.+.+....++.+-|.++++...
T Consensus 293 l~-~~~~~~l~fs~~~l~~a~~~~~rl~~~~~~~~~~ 328 (465)
T TIGR00435 293 LS-VHYRSPLDFSEELLEAAKNALERLYKALRVLDTT 328 (465)
T ss_pred Hh-CCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 22 2356889999999988888888888888877543
No 49
>TIGR00456 argS arginyl-tRNA synthetase. This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori.
Probab=97.59 E-value=5.3e-05 Score=74.26 Aligned_cols=103 Identities=9% Similarity=0.058 Sum_probs=78.8
Q ss_pred eeEEEeecCCcc-hhhhHHHHHHHHhCCCcccceeeecccc----------ccCCCCChH--------------------
Q psy7269 91 TLYQFMAKDNVP-FHSIMFPATLVAAGDQYTKVNHIMATGH----------KIGTPAPLF-------------------- 139 (235)
Q Consensus 91 ~~v~fiGkDi~~-Fhai~wpa~L~~~~~~~~~p~~i~~~G~----------kiGn~~~~~-------------------- 139 (235)
+++++.|.||.- |..+. +.|+++|.+ +|+++..|+| +.||++.+.
T Consensus 329 ~iI~V~g~~q~~h~~~v~--~~l~~lG~~--~~~~l~h~~~~~V~~~kmSkr~Gn~V~~~dll~~~~~ra~~~i~~~~~~ 404 (566)
T TIGR00456 329 KMIYVWGSDHHLHIAQFF--AILEKLGFY--KKKELIHLNFGMVPLGSMKTRRGNVISLDNLLDEASKRAGNVITIKNDL 404 (566)
T ss_pred EEEEEecCcHHHHHHHHH--HHHHHcCCC--CCCceEEEEEEEEECCCCCccCCceeeHHHHHHHHHHHHHHHHHhcCCc
Confidence 679999999975 44433 788888853 5777777776 468999998
Q ss_pred ---HHHhhhhhHHHHHHhcCCCccccccCcccccccCCCHhHHHHHH-HHHHHhhhhHhhhhhhhhccccc
Q psy7269 140 ---RKIEQAQVDEWKLKYGGQQSKESSNNKKETKQAEITFSSVEELE-AAVATQGALLGTVDVIVMSSRTG 206 (235)
Q Consensus 140 ---~~i~~~~~d~lR~~f~G~~~~~l~~~~pe~~D~~fs~~~~~~~~-~lv~~~GNlV~R~~~~~~~~~~~ 206 (235)
+.++.+|.|++||.+ .+.. ..+|.+|+++.+.+.. +.+..++|+..|+++++.++..+
T Consensus 405 ~~~~~~~~vg~dAvRy~~--------L~~~-~~~d~~Fd~d~~~~~~~n~~~yiqYa~aR~~SIlrK~~~~ 466 (566)
T TIGR00456 405 EEEDVADAVGIGAVRYFD--------LSQN-RETHYVFDWDAMLSFEGNTAPYIQYAHARICSILRKADID 466 (566)
T ss_pred cHHHHHHHhcccceeeHH--------hhcC-CCCCceecHHHHhccCCCCchhHHHHHHHHHHHHHhcccc
Confidence 556667788898744 3333 3589999999887766 78889999999999999887543
No 50
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated
Probab=97.54 E-value=0.00032 Score=67.24 Aligned_cols=94 Identities=11% Similarity=-0.003 Sum_probs=68.3
Q ss_pred EEEeecCCcchhhhHHHHHHHHhCCCcccceeeecc-cc----------ccCCCCChHHHHhhhhhHHHHHHhcCCCccc
Q psy7269 93 YQFMAKDNVPFHSIMFPATLVAAGDQYTKVNHIMAT-GH----------KIGTPAPLFRKIEQAQVDEWKLKYGGQQSKE 161 (235)
Q Consensus 93 v~fiGkDi~~Fhai~wpa~L~~~~~~~~~p~~i~~~-G~----------kiGn~~~~~~~i~~~~~d~lR~~f~G~~~~~ 161 (235)
+|.-|+|.++.|--.--|.-.+.-. +++.++.+| |+ |+||++.+.+.+++|++|++|+.+
T Consensus 223 ih~gG~DlifpHh~neiaqs~a~~g--~p~~~~w~H~g~v~~~G~KMSKS~GN~i~~~dll~~~~~d~lR~~l------- 293 (463)
T PRK00260 223 IHGGGADLIFPHHENEIAQSEAATG--KPFANYWMHNGFVTVNGEKMSKSLGNFFTIRDLLKKYDPEVLRFFL------- 293 (463)
T ss_pred eecCccccCCCchHhHHHHHHHhcC--CCcceEEEEccEEccCCCcccCcCCCCCCHHHHHHHcCchHhHHHH-------
Confidence 8999999999887555555433221 244455555 43 578899999999999999999855
Q ss_pred cccCcccccccCCCHhHHHHHHHHHHHhhhhHhhhh
Q psy7269 162 SSNNKKETKQAEITFSSVEELEAAVATQGALLGTVD 197 (235)
Q Consensus 162 l~~~~pe~~D~~fs~~~~~~~~~lv~~~GNlV~R~~ 197 (235)
+. .+..++.+|+++.+.+....++.+-|.++++.
T Consensus 294 -l~-~~~~~~~~fs~~~l~~a~~~~~rl~~~~~~~~ 327 (463)
T PRK00260 294 -LS-AHYRSPLNFSEEALEQAKKALERLYNALAETA 327 (463)
T ss_pred -Hh-CCCCCCCccCHHHHHHHHHHHHHHHHHHHHhh
Confidence 22 23468899999988877777777788777653
No 51
>KOG0437|consensus
Probab=97.33 E-value=0.00016 Score=72.02 Aligned_cols=141 Identities=21% Similarity=0.289 Sum_probs=81.3
Q ss_pred CChhHHHHHHHHHhcCCCCccceeccCCccccCCCC------CCCCeEEE---------------------------ecc
Q psy7269 16 WSSNARVICKAWLKDGLKPRCITRDLKWGIPVPLPG------FENKVFYV---------------------------WFD 62 (235)
Q Consensus 16 ~p~~~~~~~~~~l~~gL~Dw~ISR~~~WGIpvP~~~------~~~~viyV---------------------------WfD 62 (235)
..+..++-++.-|+ =|..|.+||.---|+.+|.|+ ..+.+||- =-|
T Consensus 550 f~dEtR~~fE~tLd-WL~~wacsRsyGLGTrlPWD~qyLvESLSDSTIYmAyYTvaHll~~d~~g~~~~plgi~~~QMtd 628 (1080)
T KOG0437|consen 550 FSDETRNGFEDTLD-WLGQWACSRSYGLGTRLPWDEQYLVESLSDSTIYMAYYTVAHLLHRDLYGKVEGPLGIKPDQMTD 628 (1080)
T ss_pred cCHHHHHHHHHHHH-HHHhhhhhccccCCCCCCCcHHHHHHhcchhHHHHHHHHHHHHHHHhhccCCcccCCCChhhcCH
Confidence 45555655554442 356899999999999999973 00111110 011
Q ss_pred Cccchhhcccccc--------------hhhhhhcCCCCCCCceeEEEeecCCcchhhhHH----HHHHHHhCCCccccee
Q psy7269 63 APIGYMSLTQSYC--------------GQYEAWWKSAPQSKITLYQFMAKDNVPFHSIMF----PATLVAAGDQYTKVNH 124 (235)
Q Consensus 63 a~~~yls~~~~~~--------------~~~~~~W~~~~~~~~~~v~fiGkDi~~Fhai~w----pa~L~~~~~~~~~p~~ 124 (235)
....|+..-..++ ++|+-|+|-| +.+-|||-+.=|..++ .|+.-. ..=|+.
T Consensus 629 eVwdYvF~~~~~~k~t~i~~e~L~~lr~eF~Y~YPiD-------lrvsGKDLi~NHLtfflynHvAl~~~----k~WPkg 697 (1080)
T KOG0437|consen 629 EVWDYVFLNEPYPKNTAIPEEALSNLRREFEYFYPID-------LRVSGKDLIPNHLTFFLYNHVALFPE----KKWPKG 697 (1080)
T ss_pred HHHHHhhccCCCCcCCCccHHHHHHHHHhhhccccee-------eeeccccccccceeEeeeehhhhccc----ccCccc
Confidence 1122332211111 2355555643 8999999886444332 222211 234889
Q ss_pred eecccc------ccCCCCC----hHHHHhhhhhHHHHHHhcCCCccccccCcccccccCCCH
Q psy7269 125 IMATGH------KIGTPAP----LFRKIEQAQVDEWKLKYGGQQSKESSNNKKETKQAEITF 176 (235)
Q Consensus 125 i~~~G~------kiGn~~~----~~~~i~~~~~d~lR~~f~G~~~~~l~~~~pe~~D~~fs~ 176 (235)
|-+||| ||++|-+ +.+.|+++|+|..|+.+ +-.+.-..|++|..
T Consensus 698 iraNGHLmLNsEKMSKSTGNfmTL~qaieKFgad~tRlal--------AdaGD~veDANF~e 751 (1080)
T KOG0437|consen 698 IRANGHLMLNSEKMSKSTGNFMTLEQAIEKFGADGTRLAL--------ADAGDGVEDANFVE 751 (1080)
T ss_pred eeeCceEEecchhhccccCCeeeHHHHHHHhCccceeeee--------ecccCCcccchhHH
Confidence 999998 5666665 45889999999999844 32333346777765
No 52
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=96.87 E-value=0.0027 Score=54.98 Aligned_cols=60 Identities=15% Similarity=0.043 Sum_probs=47.0
Q ss_pred EEEeecCCcchhhhHHHHHHHHhCCCcccceeeecc-cc----------ccCCCCChHHHHhhhhhHHHHHHh
Q psy7269 93 YQFMAKDNVPFHSIMFPATLVAAGDQYTKVNHIMAT-GH----------KIGTPAPLFRKIEQAQVDEWKLKY 154 (235)
Q Consensus 93 v~fiGkDi~~Fhai~wpa~L~~~~~~~~~p~~i~~~-G~----------kiGn~~~~~~~i~~~~~d~lR~~f 154 (235)
+|..|.|+++.|.....|+-.+.... .+.+.+.| |+ |.||++.+.+.++++++|++|+.+
T Consensus 131 ih~~G~Dl~fpH~~~~~a~~~a~~g~--~~~~~~~h~~~v~~~g~KMSKs~Gn~v~~~dll~~~~~da~R~~~ 201 (213)
T cd00672 131 IHGGGVDLIFPHHENEIAQSEAATGK--PFARYWLHTGHLTIDGEKMSKSLGNFITVRDALKKYDPEVLRLAL 201 (213)
T ss_pred EEeecCCCCcChHHHHHHHHHHHhCC--CCCcEEEEEEEEeccCcchhhcCCCccCHHHHHHHcCHHHHHHHH
Confidence 89999999999999998887764321 23444444 32 578999999999999999999855
No 53
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione.
Probab=95.94 E-value=0.016 Score=54.90 Aligned_cols=94 Identities=17% Similarity=0.063 Sum_probs=65.4
Q ss_pred EEEeecCCcchhhhHHHHHHHHhCCCcccceeeecc-cc----------ccCCCCChHHHHhh-hhhHHHHHHhcCCCcc
Q psy7269 93 YQFMAKDNVPFHSIMFPATLVAAGDQYTKVNHIMAT-GH----------KIGTPAPLFRKIEQ-AQVDEWKLKYGGQQSK 160 (235)
Q Consensus 93 v~fiGkDi~~Fhai~wpa~L~~~~~~~~~p~~i~~~-G~----------kiGn~~~~~~~i~~-~~~d~lR~~f~G~~~~ 160 (235)
+|.-|.|.++.|--.--|.-.+.-. ..+..++.+| |+ |+||.+.+.+.++. +++|.+|+.+
T Consensus 244 ih~GG~DLifpHheneiaq~~A~~g-~~~~~~~w~H~g~l~~~G~KMSKSlGN~i~~~dl~~~g~dp~~lRl~l------ 316 (411)
T TIGR03447 244 IQGGGSDLIFPHHEFSAAHAEAATG-VRRMARHYVHAGMIGLDGEKMSKSLGNLVFVSKLRAAGVDPAAIRLGL------ 316 (411)
T ss_pred cccCcccccccchHhHHHHHHHhcC-CCCcceEEEECCEECcCCCCccCcCCCCCCHHHHHhcCCCcccEEEEE------
Confidence 6777999999988777777666421 1123344444 43 46777777777765 7888999844
Q ss_pred ccccCcccccccCCCHhHHHHHHHHHHHhhhhHhhh
Q psy7269 161 ESSNNKKETKQAEITFSSVEELEAAVATQGALLGTV 196 (235)
Q Consensus 161 ~l~~~~pe~~D~~fs~~~~~~~~~lv~~~GNlV~R~ 196 (235)
+ ..+..++.+|+.+.+.+..+.++.+-|.+.++
T Consensus 317 --l-s~~Yr~pl~fs~e~l~~a~~~l~rl~~~~~~~ 349 (411)
T TIGR03447 317 --L-AGHYRQDRDWTDAVLAEAEARLARWRAALAAT 349 (411)
T ss_pred --e-cCCCCCCCccCHHHHHHHHHHHHHHHHHHhhc
Confidence 2 33456889999999988777777777777654
No 54
>PRK12418 cysteinyl-tRNA synthetase; Provisional
Probab=95.79 E-value=0.025 Score=53.28 Aligned_cols=93 Identities=17% Similarity=-0.008 Sum_probs=65.0
Q ss_pred EEEeecCCcchhhhHHHHHHHHhCCCcccceeeecccc-----------ccCCCCChHHHHhh-hhhHHHHHHhcCCCcc
Q psy7269 93 YQFMAKDNVPFHSIMFPATLVAAGDQYTKVNHIMATGH-----------KIGTPAPLFRKIEQ-AQVDEWKLKYGGQQSK 160 (235)
Q Consensus 93 v~fiGkDi~~Fhai~wpa~L~~~~~~~~~p~~i~~~G~-----------kiGn~~~~~~~i~~-~~~d~lR~~f~G~~~~ 160 (235)
+|.-|.|.++.|--...|.-.+... ..++.++.+||. |+||.+.+.+.++. +.++.+|+.+
T Consensus 217 IH~GG~DL~FPHHeneiaq~~a~~g-~~~~~~~w~H~g~l~~~G~KMSKSlGN~i~~~ell~~G~d~~~lR~~l------ 289 (384)
T PRK12418 217 IQGGGSDLIFPHHEFSAAHAEAATG-ERRFARHYVHAGMIGLDGEKMSKSRGNLVFVSRLRAAGVDPAAIRLAL------ 289 (384)
T ss_pred cccCccccccchhHhHHHHHHHhcC-CCCcceEEEECCEECCCCCcccCcCCCcCCHHHHHhccCChhheeEEE------
Confidence 7888999999998888887766432 123456666643 46777777776543 4555899833
Q ss_pred ccccCcccccccCCCHhHHHHHHHHHHHhhhhHhh
Q psy7269 161 ESSNNKKETKQAEITFSSVEELEAAVATQGALLGT 195 (235)
Q Consensus 161 ~l~~~~pe~~D~~fs~~~~~~~~~lv~~~GNlV~R 195 (235)
+ ..+..++.+|+++.+.+....++.+-|.+.+
T Consensus 290 --l-s~~yr~~l~fs~e~l~~a~~~l~r~~~~~~~ 321 (384)
T PRK12418 290 --L-AGHYRADREWTDAVLAEAEARLARWRAAAAL 321 (384)
T ss_pred --e-ccCCCCCcccCHHHHHHHHHHHHHHHHHHhc
Confidence 2 3456688999999998877777777777765
No 55
>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase. Class I lysyl tRNA synthetase (LysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity.
Probab=95.12 E-value=0.091 Score=48.97 Aligned_cols=73 Identities=12% Similarity=0.046 Sum_probs=45.7
Q ss_pred EEEeecCCcch---hhhHHHHHHH-HhCCCcccceeeecccc-----------ccCCCCChHHHHhhhhhHHHHHHhcCC
Q psy7269 93 YQFMAKDNVPF---HSIMFPATLV-AAGDQYTKVNHIMATGH-----------KIGTPAPLFRKIEQAQVDEWKLKYGGQ 157 (235)
Q Consensus 93 v~fiGkDi~~F---hai~wpa~L~-~~~~~~~~p~~i~~~G~-----------kiGn~~~~~~~i~~~~~d~lR~~f~G~ 157 (235)
+-+.|||+.-. +...- +++. ..| +..|.+ +++|+ |.||++.+.++|+.+++|++|+.+.
T Consensus 230 ~E~~GkDh~~~ggs~~~~~-~i~~~ilg--~~~P~~-~~ye~V~l~gg~KMSKSkGnvI~~~dll~~~~~dalR~~~l-- 303 (353)
T cd00674 230 FEPFGKDHASAGGSYDTGK-EIAREIFG--GEPPVP-VMYEFIGLKGGGKMSSSKGNVITPSDWLEVAPPEVLRYLYA-- 303 (353)
T ss_pred EEeeCccccccccHHHHHH-HHHHHHhC--CCCCeE-EEeeeEEeCCCCccCCCCCCcCCHHHHHHHhChHHHHHHHH--
Confidence 56689999743 32222 2332 444 234543 34443 5788899999999999999998652
Q ss_pred CccccccCcccccccCCCHh
Q psy7269 158 QSKESSNNKKETKQAEITFS 177 (235)
Q Consensus 158 ~~~~l~~~~pe~~D~~fs~~ 177 (235)
+.....+|.+|+++
T Consensus 304 ------~~~~~~~~i~Fd~~ 317 (353)
T cd00674 304 ------RRKNPEKHIGFDLD 317 (353)
T ss_pred ------hCCCCCCCCCcChh
Confidence 11124477888873
No 56
>PLN02946 cysteine-tRNA ligase
Probab=94.59 E-value=0.064 Score=52.78 Aligned_cols=97 Identities=12% Similarity=-0.028 Sum_probs=67.8
Q ss_pred EEEeecCCcchhhhHHHHHHHH-hCCCcccceeeecccc----------ccCCCCChHHHHhhhhhHHHHHHhcCCCccc
Q psy7269 93 YQFMAKDNVPFHSIMFPATLVA-AGDQYTKVNHIMATGH----------KIGTPAPLFRKIEQAQVDEWKLKYGGQQSKE 161 (235)
Q Consensus 93 v~fiGkDi~~Fhai~wpa~L~~-~~~~~~~p~~i~~~G~----------kiGn~~~~~~~i~~~~~d~lR~~f~G~~~~~ 161 (235)
+|-=|.|.++-|-=.--|+..+ .|.++ -+..+.+|| |+||.+.+.+.+++|++|.+|+.+
T Consensus 280 IH~GG~DL~FPHHENEiAQsea~~g~~~--a~yW~H~G~v~~~G~KMSKSlGN~itl~dll~~y~~dalR~~l------- 350 (557)
T PLN02946 280 IHGGGMDLVFPHHENEIAQSCAACCDSN--ISYWIHNGFVTVDSEKMSKSLGNFFTIRQVIDLYHPLALRLFL------- 350 (557)
T ss_pred EeccccccCCCcccchHHHHHHHhCCCC--CceeeEeeEEEeCCCCcCCcCCCcCCHHHHHHhcCccceeeee-------
Confidence 8888999999887777777665 34322 122233343 467777888999999999999844
Q ss_pred cccCcccccccCCCHhHHHHHHHHHHHhhhhHhhhhhhh
Q psy7269 162 SSNNKKETKQAEITFSSVEELEAAVATQGALLGTVDVIV 200 (235)
Q Consensus 162 l~~~~pe~~D~~fs~~~~~~~~~lv~~~GNlV~R~~~~~ 200 (235)
+. ....++.+|+++.+.+-...+..+-+.++|+...+
T Consensus 351 -Ls-~hyr~~l~fs~e~L~~a~~~l~~l~~~~~~~~~~l 387 (557)
T PLN02946 351 -LG-THYRSPINYSDVQLESASERIFYIYQTLHDCEESL 387 (557)
T ss_pred -ec-cCCCCCcEecHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 22 23558889999988776666666677777776554
No 57
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed
Probab=94.53 E-value=0.15 Score=49.75 Aligned_cols=72 Identities=14% Similarity=0.099 Sum_probs=45.8
Q ss_pred EEEeecCCcc-hhhhHHHHHHH-HhCCCcccceeeecc-------cc----ccCCCCChHHHHhhhhhHHHHHHhcCCCc
Q psy7269 93 YQFMAKDNVP-FHSIMFPATLV-AAGDQYTKVNHIMAT-------GH----KIGTPAPLFRKIEQAQVDEWKLKYGGQQS 159 (235)
Q Consensus 93 v~fiGkDi~~-Fhai~wpa~L~-~~~~~~~~p~~i~~~-------G~----kiGn~~~~~~~i~~~~~d~lR~~f~G~~~ 159 (235)
+-..|||+.. .|...- .+.- ..| +.+|.. +.+ |- |.||++.+.++++.+++|.+|+++
T Consensus 237 ~e~~GkDh~~~s~~~~~-~i~~~ilg--~~~P~~-~~y~~v~~~~G~KMSKSkGN~i~~~d~l~~~~pd~lR~~l----- 307 (510)
T PRK00750 237 FEPFGKDHASASYDTSK-KIAREILG--GEPPEP-FVYELFLDKKGEKISKSKGNVITIEDWLEYAPPESLRLFM----- 307 (510)
T ss_pred EEeeCcccCcchHHHHH-HHHHHHcC--CCCCee-eeeeeEEeCCCCcccccCCCccCHHHHHHHCCHHHHHHHH-----
Confidence 6778999998 543321 2222 334 334544 333 33 468888899999999999999644
Q ss_pred cccccCcccccccCCCH
Q psy7269 160 KESSNNKKETKQAEITF 176 (235)
Q Consensus 160 ~~l~~~~pe~~D~~fs~ 176 (235)
....+..+|.+|+.
T Consensus 308 ---~~~~~~~~~~~f~~ 321 (510)
T PRK00750 308 ---FARPKPAKRLDFDV 321 (510)
T ss_pred ---HhCCCCCCCCcccH
Confidence 22333457778887
No 58
>KOG1247|consensus
Probab=93.88 E-value=0.063 Score=50.98 Aligned_cols=36 Identities=53% Similarity=1.135 Sum_probs=33.0
Q ss_pred eeeccccccCCCCChHHHHhhhhhHHHHHHhcCCCc
Q psy7269 124 HIMATGHKIGTPAPLFRKIEQAQVDEWKLKYGGQQS 159 (235)
Q Consensus 124 ~i~~~G~kiGn~~~~~~~i~~~~~d~lR~~f~G~~~ 159 (235)
-.+..||+||++.++|+.|+...++.+|.+|+|+|.
T Consensus 531 ~~l~~gH~ig~~~pLFq~l~~~qiee~r~k~gg~q~ 566 (567)
T KOG1247|consen 531 CRLLAGHRIGTPSPLFQKLDEDQIEEWRAKFGGQQS 566 (567)
T ss_pred eeecCcCccCCccHHHHhcCHHHHHHHHHhhcCCCC
Confidence 467889999999999999999999999999999774
No 59
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional
Probab=93.86 E-value=0.29 Score=49.24 Aligned_cols=95 Identities=12% Similarity=0.017 Sum_probs=64.2
Q ss_pred EEEeecCCcchhhhHHHHHHHH-hCCC-------------c-ccceeeecccc----------ccCCCCChHHHHhhhhh
Q psy7269 93 YQFMAKDNVPFHSIMFPATLVA-AGDQ-------------Y-TKVNHIMATGH----------KIGTPAPLFRKIEQAQV 147 (235)
Q Consensus 93 v~fiGkDi~~Fhai~wpa~L~~-~~~~-------------~-~~p~~i~~~G~----------kiGn~~~~~~~i~~~~~ 147 (235)
+|-=|.|.++-|-=-=-|.-.+ .|.+ . ..-+..+-+|| |+||++.+.+.+++|++
T Consensus 449 IHgGG~DLiFPHHENEiAQseA~~g~~~~~~~~~~~~~~~~~~~aryWmHnG~V~vdGeKMSKSLGN~it~~dlLe~ygp 528 (699)
T PRK14535 449 IHGGGADLQFPHHENEIAQSVGATGHTCGHHHAQTHHGQSIASHVKYWLHNGFIRVDGEKMSKSLGNFFTIREVLKQYDP 528 (699)
T ss_pred eECCccccCCCCCccHHHHHHHhhCCCcccccccccccccccccccEEEECCeEeeCCCccCCCCCCcCCHHHHHHhCCH
Confidence 8888999998775444455444 2321 0 01123444454 57888889999999999
Q ss_pred HHHHHHhcCCCccccccCcccccccCCCHhHHHHHHHHHHHhhhhHhhh
Q psy7269 148 DEWKLKYGGQQSKESSNNKKETKQAEITFSSVEELEAAVATQGALLGTV 196 (235)
Q Consensus 148 d~lR~~f~G~~~~~l~~~~pe~~D~~fs~~~~~~~~~lv~~~GNlV~R~ 196 (235)
|.+|+.+.+ ....++.+|+.+.+.+....++.+-+.++++
T Consensus 529 dalRl~lLs---------shYRspL~fS~e~Le~Ak~~l~Rl~~~l~~~ 568 (699)
T PRK14535 529 EVVRFFILR---------AHYRSPLNYSDAHLDDAKGALTRLYTTLKNT 568 (699)
T ss_pred HHHHHHHHc---------CCCCCCCCcCHHHHHHHHHHHHHHHHHHHhh
Confidence 999995522 2356788999998888766666666666654
No 60
>PRK01611 argS arginyl-tRNA synthetase; Reviewed
Probab=89.18 E-value=0.44 Score=46.23 Aligned_cols=99 Identities=14% Similarity=0.147 Sum_probs=61.9
Q ss_pred eeEEEeecCCcc-hhhhHHHHHHHHhCCCcccce-eeecc---c-------c----ccCCCCChHHHHhh-hhh------
Q psy7269 91 TLYQFMAKDNVP-FHSIMFPATLVAAGDQYTKVN-HIMAT---G-------H----KIGTPAPLFRKIEQ-AQV------ 147 (235)
Q Consensus 91 ~~v~fiGkDi~~-Fhai~wpa~L~~~~~~~~~p~-~i~~~---G-------~----kiGn~~~~~~~i~~-~~~------ 147 (235)
+++++.|.||.- |..+. +.+...|.+ .++ .++.| | . +.||++.+.+.|++ ++.
T Consensus 274 ~~i~V~g~~q~~hf~~~~--~~~~~lg~~--~~~~~~~~h~~~glv~~~~g~KMSkR~Gn~i~l~dll~~a~g~~~~~~~ 349 (507)
T PRK01611 274 RVIYVVGADHHGHFKRLK--AALKALGYD--PDALEVLLHQMVGLVRGGEGVKMSTRAGNVVTLDDLLDEAVGRARELIE 349 (507)
T ss_pred EEEEEECCChHHHHHHHH--HHHHHcCCC--cccceEEEEEEEEeeECCCCCcccCCCCceeEHHHHHHHHHHHHHHHHH
Confidence 579999999974 44433 566666632 222 33333 2 1 46899999999999 999
Q ss_pred ----------HHHHHHhcCCCccccccCcccccccCCCHhHHHHHHH--HHHHhhhhHhhhhhhhhcc
Q psy7269 148 ----------DEWKLKYGGQQSKESSNNKKETKQAEITFSSVEELEA--AVATQGALLGTVDVIVMSS 203 (235)
Q Consensus 148 ----------d~lR~~f~G~~~~~l~~~~pe~~D~~fs~~~~~~~~~--lv~~~GNlV~R~~~~~~~~ 203 (235)
|++|+.+ .+. +..+|.+|+++.+.+... ..-.|- --.|+.+++.+.
T Consensus 350 ~~~~a~~vgidAiR~~~--------L~~-~~~~~~~Fd~~~~~~~~~~~~~yvqY-a~aR~~sil~k~ 407 (507)
T PRK01611 350 EKEIAEAVGIDAVRYFD--------LSR-SRDKDLDFDLDLALSFEGNNPPYVQY-AHARICSILRKA 407 (507)
T ss_pred hhhhhhhhccceeEehh--------hhc-CCCCCCccCHHHHHhhcCCCcHHHHH-HHHHHHHHHHhh
Confidence 9999844 222 346889999998876531 111111 113666776554
No 61
>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete. This model represents the lysyl-tRNA synthetases that are class I amino-acyl tRNA synthetases. It includes archaeal and spirochete examples of the enzyme. All other known examples are class IIc amino-acyl tRNA synthetases and seem to form a separate orthologous set.
Probab=88.57 E-value=2.5 Score=41.43 Aligned_cols=40 Identities=8% Similarity=0.081 Sum_probs=30.5
Q ss_pred ccCCCCChHHHHhhhhhHHHHHHhcCCCccccccCcccccccCCCHhHH
Q psy7269 131 KIGTPAPLFRKIEQAQVDEWKLKYGGQQSKESSNNKKETKQAEITFSSV 179 (235)
Q Consensus 131 kiGn~~~~~~~i~~~~~d~lR~~f~G~~~~~l~~~~pe~~D~~fs~~~~ 179 (235)
|.||++.+.++++.+++|.+|+.|.. . ...++.+|+.+.+
T Consensus 278 S~Gn~itl~dll~~~~pdalR~~~l~--------~-~~~~~ldFd~~~l 317 (515)
T TIGR00467 278 SKGDVISVKDVLEVYTPEITRFLFAR--------T-KPEFHISFDLDVI 317 (515)
T ss_pred CCCCCccHHHHHHHcCHHHHHHHHhc--------c-CCCCCCcCCHHHH
Confidence 56888888899999999999996522 2 2347788998755
No 62
>cd07957 Anticodon_Ia_Met Anticodon-binding domain of methionyl tRNA synthetases. This domain is found in methionyl tRNA synthetases (MetRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon (CAU). MetRS catalyzes the transfer of methionine to the 3'-end of its tRNA.
Probab=85.15 E-value=0.66 Score=35.42 Aligned_cols=30 Identities=10% Similarity=0.004 Sum_probs=25.9
Q ss_pred HHHHHhhhhHhhhhhhhhcccccccccccc
Q psy7269 184 AAVATQGALLGTVDVIVMSSRTGAYAVTSE 213 (235)
Q Consensus 184 ~lv~~~GNlV~R~~~~~~~~~~~~~~~~~~ 213 (235)
++++++||+++|+.+++.+...|..|..+.
T Consensus 4 ~l~~~~gnll~r~~~~~~~~~~~~~~~~~~ 33 (129)
T cd07957 4 ELANNLGNLVNRTLNMASKYFGGVVPEFGG 33 (129)
T ss_pred HHHhhHhhHHHHHHHHHHHHcCCcCCCCCC
Confidence 689999999999999999988887776543
No 63
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=83.81 E-value=3.8 Score=39.64 Aligned_cols=95 Identities=14% Similarity=0.019 Sum_probs=61.1
Q ss_pred EEEeecCCcchhhhHHHHHHHHhCCCccccee-------eeccccccCCCCChH----HHHhhhhhHHHHHHhcCCCccc
Q psy7269 93 YQFMAKDNVPFHSIMFPATLVAAGDQYTKVNH-------IMATGHKIGTPAPLF----RKIEQAQVDEWKLKYGGQQSKE 161 (235)
Q Consensus 93 v~fiGkDi~~Fhai~wpa~L~~~~~~~~~p~~-------i~~~G~kiGn~~~~~----~~i~~~~~d~lR~~f~G~~~~~ 161 (235)
+|-=|.|-++.|==-=-|.-.+... .+...+ +.+.|.|||||.+.| +.+++++++.+|+.+..
T Consensus 224 IHgGG~DLiFPHHENEiAQsea~~g-~~~~a~yWmH~G~l~i~geKMSKSLGNfiti~d~l~~~~p~~lR~~lls----- 297 (464)
T COG0215 224 IHGGGSDLIFPHHENEIAQSEAATG-VKPFAKYWMHNGFLNIDGEKMSKSLGNFITVRDLLKKYDPEVLRLFLLS----- 297 (464)
T ss_pred eecCcccccCCCcccHHHHHHhhhC-CCcceeEeEEcceeeecCcCcccccCCeeEHHHHHhhcCHHHHHHHHHH-----
Confidence 7888999998775444455554432 112223 333344666665554 78899999999985522
Q ss_pred cccCcccccccCCCHhHHHHHHHHHHHhhhhHhhhh
Q psy7269 162 SSNNKKETKQAEITFSSVEELEAAVATQGALLGTVD 197 (235)
Q Consensus 162 l~~~~pe~~D~~fs~~~~~~~~~lv~~~GNlV~R~~ 197 (235)
..-.++.+||.+.+.+-......+-|.++|+.
T Consensus 298 ----~HYR~pl~fsee~L~~A~~~l~rl~~~~~~~~ 329 (464)
T COG0215 298 ----SHYRSPLDFSEELLEEAKKALERLYNALRRLR 329 (464)
T ss_pred ----HHhCCccccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 22457788999988876666666666666554
No 64
>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3SP1_B 3TQO_A 3C8Z_B 1LI5_B 1LI7_B 1U0B_B.
Probab=82.36 E-value=3 Score=38.15 Aligned_cols=80 Identities=19% Similarity=0.128 Sum_probs=45.7
Q ss_pred EEEeecCCcchhhhHHHHHHHHh-CCCccc----ceeeecccccc----CCCCChHHHHhhhhhHHHHHHhcCCCccccc
Q psy7269 93 YQFMAKDNVPFHSIMFPATLVAA-GDQYTK----VNHIMATGHKI----GTPAPLFRKIEQAQVDEWKLKYGGQQSKESS 163 (235)
Q Consensus 93 v~fiGkDi~~Fhai~wpa~L~~~-~~~~~~----p~~i~~~G~ki----Gn~~~~~~~i~~~~~d~lR~~f~G~~~~~l~ 163 (235)
+|-=|.|.++-|-=-=-|...+. |.++.- -.++.+.|.|| ||.+..-+.+++|+++.+|+.+..
T Consensus 209 IH~GG~DL~FPHHENEiAqs~a~~g~~~a~~W~H~g~l~~~g~KMSKSlgN~~~i~dll~~~~~~~lR~~~l~------- 281 (300)
T PF01406_consen 209 IHGGGIDLIFPHHENEIAQSEAATGKPFANYWMHNGHLNVDGEKMSKSLGNFITIRDLLKKYSPDALRLFLLS------- 281 (300)
T ss_dssp EEEEEGGGTTTHHHHHHHHHHHHHSS-SEEEEEEE--EEETTCE--TTTT---BHHHHHTTS-HHHHHHHHHT-------
T ss_pred EEccccccCCCCccchHHHHHHhhCchHHHHHHHHHHHhhcCccccccCCCEEEHHHHhhcCCHHHHHHHHhc-------
Confidence 89999999998865555666554 322210 01233334455 555555577888999999996632
Q ss_pred cCcccccccCCCHhHHHH
Q psy7269 164 NNKKETKQAEITFSSVEE 181 (235)
Q Consensus 164 ~~~pe~~D~~fs~~~~~~ 181 (235)
..-.++.+||++.+.+
T Consensus 282 --~hYr~~l~~s~~~l~~ 297 (300)
T PF01406_consen 282 --THYRKPLNFSEENLEE 297 (300)
T ss_dssp --S-TTS-EEE-HHHHHH
T ss_pred --CCCCCccccCHHHHHH
Confidence 2345678899888765
No 65
>KOG2007|consensus
Probab=66.66 E-value=9.7 Score=37.34 Aligned_cols=57 Identities=12% Similarity=0.121 Sum_probs=38.9
Q ss_pred ccccCCCCChH----HHHhhhhhHHHHHHhcCCCccccccCcccccccCCCHhHHHHHHHHHHHhhhhHh
Q psy7269 129 GHKIGTPAPLF----RKIEQAQVDEWKLKYGGQQSKESSNNKKETKQAEITFSSVEELEAAVATQGALLG 194 (235)
Q Consensus 129 G~kiGn~~~~~----~~i~~~~~d~lR~~f~G~~~~~l~~~~pe~~D~~fs~~~~~~~~~lv~~~GNlV~ 194 (235)
|-|||+|...| +.+++|.+++||+.|-..+ ..++.+|+...+.....+-....|+..
T Consensus 303 g~KMSKSLkNFiTIke~Lk~~sp~qLRl~fl~~~---------wr~~ldYs~s~m~~a~q~e~~~~~ff~ 363 (586)
T KOG2007|consen 303 GEKMSKSLKNFITIKEALKKYSPRQLRLAFLLHQ---------WRSPLDYSDSTMEQALQLEKSLNNFFL 363 (586)
T ss_pred cchhhhhhccceeHHHHHHhcCHHHHHHHHHHHH---------hcCcCCchHHHHHHHHHHHHHHHHHHH
Confidence 33777777666 6779999999999773322 446688888877665555555555554
No 66
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=63.45 E-value=13 Score=36.96 Aligned_cols=81 Identities=15% Similarity=0.171 Sum_probs=51.5
Q ss_pred eeEEEeecCCcchhhhHHHHHHHHhCCCcccceeeecc----------cc----ccCCCCChHHHHhhhh----------
Q psy7269 91 TLYQFMAKDNVPFHSIMFPATLVAAGDQYTKVNHIMAT----------GH----KIGTPAPLFRKIEQAQ---------- 146 (235)
Q Consensus 91 ~~v~fiGkDi~~Fhai~wpa~L~~~~~~~~~p~~i~~~----------G~----kiGn~~~~~~~i~~~~---------- 146 (235)
++++++|.||.-.-.-++ +.|...|. ..++.++.| |. .-|+++.+-+.++..+
T Consensus 336 ~~IyV~gadq~~~~~ql~-~~l~~~g~--~~~~~~~~h~~~~l~~~~~g~kmStR~G~~vtl~dllde~~era~~~~~~~ 412 (577)
T COG0018 336 KLIYVLGADQHGHFKQLK-AVLELLGY--GPDKEVLLHQGVGLVRGGEGVKMSTRAGNVVTLDDLLDEAGERAPEEMEEK 412 (577)
T ss_pred EEEEEeCCcchhHHHHHH-HHHHHhcC--CCccceEEEEEEeeeECCCCccccccCCceEEHHHHHHHHHHHhhhHhhhh
Confidence 679999999986544444 33334442 223233333 21 2588888989988888
Q ss_pred ------------hHHHHHHhcCCCccccccCcccccccCCCHhHHHHHH
Q psy7269 147 ------------VDEWKLKYGGQQSKESSNNKKETKQAEITFSSVEELE 183 (235)
Q Consensus 147 ------------~d~lR~~f~G~~~~~l~~~~pe~~D~~fs~~~~~~~~ 183 (235)
.+++||.+ .+.. ..++..|.|+.+.+.+
T Consensus 413 ~~~~~~iA~~vgi~Avry~~--------l~~~-~~~~~~Fd~d~~lsfe 452 (577)
T COG0018 413 EEKNEEIAEVVGIDAVRYAD--------LSRS-RDKDYVFDWDKALSFE 452 (577)
T ss_pred hhhhHHHHHHhhhhhHHHHH--------HhcC-CCCCcEeeHHHHHhcc
Confidence 99999854 2222 2367889998886643
No 67
>cd07959 Anticodon_Ia_Leu_AEc Anticodon-binding domain of archaeal and eukaryotic cytoplasmic leucyl tRNA synthetases. This domain is found in leucyl tRNA synthetases (LeuRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain. In contrast to other class Ia enzymes, the anticodon is not used as an identity element in LeuRS (with exceptions such as Saccharomyces cerevisiae and some other eukaryotes). No anticodon-binding site can be defined for this family, which includes archaeal and eukaryotic cytoplasmic members. LeuRS catalyzes the transfer of leucine to the 3'-end of its tRNA.
Probab=55.68 E-value=8 Score=28.90 Aligned_cols=26 Identities=4% Similarity=-0.215 Sum_probs=20.9
Q ss_pred HHHHHhhhhHhhhhhhhhcccccccc
Q psy7269 184 AAVATQGALLGTVDVIVMSSRTGAYA 209 (235)
Q Consensus 184 ~lv~~~GNlV~R~~~~~~~~~~~~~~ 209 (235)
++++..||+++|+.+++.+.-.+..|
T Consensus 4 ~~~~~~~~~l~R~~~~~~~~~~~~~~ 29 (117)
T cd07959 4 EEANSAILRLERFYELAEELIETEGE 29 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 68999999999999999875444443
No 68
>PF10929 DUF2811: Protein of unknown function (DUF2811); InterPro: IPR021231 This is a bacterial family of uncharacterised proteins.
Probab=32.41 E-value=48 Score=22.92 Aligned_cols=37 Identities=16% Similarity=0.536 Sum_probs=25.6
Q ss_pred hHHHHHHHHhCCCCCCh-hH-HHHHHHHH-hcCCCCcccee
Q psy7269 2 EDKLQSWVSETSDQWSS-NA-RVICKAWL-KDGLKPRCITR 39 (235)
Q Consensus 2 ~~~L~e~~~~~~~~~p~-~~-~~~~~~~l-~~gL~Dw~ISR 39 (235)
.+.+..|++++| .|-. ++ ..-+..+| .+|..|.++||
T Consensus 11 ~~~m~~fie~hP-~WDQ~Rl~~aALa~FL~QnG~~~r~~~r 50 (57)
T PF10929_consen 11 HQAMKDFIETHP-NWDQYRLFQAALAGFLLQNGCQDRAVTR 50 (57)
T ss_pred HHHHHHHHHcCC-CchHHHHHHHHHHHHHHHcCchhHHHHH
Confidence 467889998887 5844 44 34444554 57888999888
No 69
>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis]
Probab=32.37 E-value=70 Score=31.51 Aligned_cols=62 Identities=16% Similarity=0.126 Sum_probs=40.8
Q ss_pred EEEeecCCcchhhhHHHHHHHHh---CC--Cccc-ceeeeccc-c----ccCCCCChHHHHhhhhhHHHHHHh
Q psy7269 93 YQFMAKDNVPFHSIMFPATLVAA---GD--QYTK-VNHIMATG-H----KIGTPAPLFRKIEQAQVDEWKLKY 154 (235)
Q Consensus 93 v~fiGkDi~~Fhai~wpa~L~~~---~~--~~~~-p~~i~~~G-~----kiGn~~~~~~~i~~~~~d~lR~~f 154 (235)
+--.|||+.--=..|=.+..++. |. |..+ +.-|..-| - |.||++.+-++++-+.++.+|+.+
T Consensus 232 ~EPfGKDH~a~ggSydtg~~I~~ei~g~~pP~~~~YE~i~lkg~~~mSsSkG~~i~~~dwlev~~pE~lry~~ 304 (521)
T COG1384 232 FEPFGKDHAAAGGSYDTGKRIAREIFGYEPPVPFVYEWILLKGGGKMSSSKGNVISLSDWLEVAPPEVLRYLI 304 (521)
T ss_pred cccCCcccccccCchHHHHHHHHHhcCCCCCCCCceEEEEecCCcccccCCCcEEcHHHHHHhcCHhHeeeee
Confidence 33459999864444455555555 42 2222 23455555 2 578899999999999999999855
No 70
>PF00458 WHEP-TRS: WHEP-TRS domain; InterPro: IPR000738 A conserved domain of 46 amino acids, called WHEP-TRS has been shown [] to exist in a number of higher eukaryote aminoacyl-transfer RNA synthetases. This domain is present one to six times in the several enzymes. There are three copies in mammalian multifunctional aminoacyl-tRNA synthetase in a region that separates the N-terminal glutamyl-tRNA synthetase domain from the C-terminal prolyl-tRNA synthetase domain, and six copies in the intercatalytic region of the Drosophila enzyme. The domain is found at the N-terminal extremity of the mammalian tryptophanyl- tRNA synthetase and histidyl-tRNA synthetase, and the mammalian, insect, nematode and plant glycyl- tRNA synthetases []. This domain could contain a central alpha-helical region and may play a role in the association of tRNA-synthetases into multienzyme complexes.; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation; PDB: 1R1B_A 1D2D_A 1X59_A 1FYJ_A 2ZT8_A 2ZXF_A 2ZT7_A 2ZT6_A 2PME_A 2ZT5_A ....
Probab=31.53 E-value=41 Score=22.99 Aligned_cols=15 Identities=33% Similarity=0.490 Sum_probs=12.2
Q ss_pred HHHHHHhhhhHhhhh
Q psy7269 183 EAAVATQGALLGTVD 197 (235)
Q Consensus 183 ~~lv~~~GNlV~R~~ 197 (235)
.+.|..|||+||.+-
T Consensus 2 ~~~I~~QG~~VR~LK 16 (56)
T PF00458_consen 2 EAQIAAQGDKVRKLK 16 (56)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH
Confidence 467899999999654
No 71
>PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Lysyl-tRNA synthetase (6.1.1.6 from EC) is an alpha 2 homodimer that belong to both class I and class II. In eubacteria and eukaryota lysyl-tRNA synthetases belong to class II in the same family as aspartyl tRNA synthetase. The class Ic lysyl-tRNA synthetase family is present in archaea and in a number of bacterial groups that include the alphaproteobacteria and spirochaetes[]. A refined crystal structures shows that the active site of LysU is shaped to position the substrates for the nucleophilic attack of the lysine carboxylate on the ATP alpha-phosphate. No residues are directly involved in catalysis, but a number of highly conserved amino acids and three metal ions coordinate the substrates and stabilise the pentavalent transition state. A loop close to the catalytic pocket, disordered in the lysine-bound structure, becomes ordered upon adenine binding [].; GO: 0000166 nucleotide binding, 0004824 lysine-tRNA ligase activity, 0005524 ATP binding, 0006430 lysyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IRX_A.
Probab=30.73 E-value=74 Score=29.93 Aligned_cols=62 Identities=13% Similarity=0.098 Sum_probs=28.4
Q ss_pred EEEeecCCcchhhhHHHHHHHH---hC--CCccc-ceeeecccc-----ccCCCCChHHHHhhhhhHHHHHHh
Q psy7269 93 YQFMAKDNVPFHSIMFPATLVA---AG--DQYTK-VNHIMATGH-----KIGTPAPLFRKIEQAQVDEWKLKY 154 (235)
Q Consensus 93 v~fiGkDi~~Fhai~wpa~L~~---~~--~~~~~-p~~i~~~G~-----kiGn~~~~~~~i~~~~~d~lR~~f 154 (235)
+--.|||+.--=..+=.+--++ .| .|..+ +.-+...|- |.||++.+.++++-+.++.||+.|
T Consensus 237 fEp~GKDH~~~GGS~d~~~~I~~~i~g~~pP~~~~YE~~~~~g~~kmSsSkG~~~t~~e~L~~~~PE~lr~l~ 309 (360)
T PF01921_consen 237 FEPFGKDHASPGGSYDTSKRIAREILGYEPPVPFPYEFFLDKGGGKMSSSKGNGITPEEWLEYAPPESLRYLM 309 (360)
T ss_dssp EEEEEHHHHCTTSHHHHHHHHHHHCC-----EEEEE--EEES--------------HHHHHTTS-HHHHHHHH
T ss_pred eccCCCccCCCCCChhhHHHHHHHHhCCCCCCCCCeeEEEeCCCcccccCCCCccCHHHHHHhcCHHHHHHHH
Confidence 3445999976211222233333 22 12222 233555554 568888899999999999999966
No 72
>PF03185 CaKB: Calcium-activated potassium channel, beta subunit; InterPro: IPR003930 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Ca2+-activated K+ channels are a diverse group of channels that are activated by an increase in intracellular Ca2+ concentration. They are found in the majority of nerve cells, where they modulate cell excitability and action potential. Three types of Ca2+-activated K+ channel have been characterised, termed small-conductance (SK), intermediate conductance (IK) and large conductance (BK) respectively []. BK channels (also referred to as maxi-K channels) are widely expressed in the body, being found in glandular tissue, smooth and skeletal muscle, as well as in neural tissues. They have been demonstrated to regulate arteriolar and airway diameter, and also neurotransmitter release. Each channel complex is thought to be composed of 2 types of subunit: the pore- forming (alpha) subunits and smaller accessory (beta) subunits. The beta subunit (which is thought to possess 2 TM domains) increases the Ca2+ sensitivity of the BK channel []. It does this by enhancing the time spent by the channel in burst-like open states. However, it has little effect on the durations of closed intervals between bursts, or on the numbers of open and closed states entered during gating []. ; GO: 0015269 calcium-activated potassium channel activity, 0006813 potassium ion transport, 0016020 membrane; PDB: 1JO6_A.
Probab=27.56 E-value=20 Score=30.87 Aligned_cols=16 Identities=31% Similarity=0.775 Sum_probs=0.0
Q ss_pred chhhhHHHHHHHHhCC
Q psy7269 102 PFHSIMFPATLVAAGD 117 (235)
Q Consensus 102 ~Fhai~wpa~L~~~~~ 117 (235)
-||+++||++++..|.
T Consensus 167 ~fhslfWP~l~lvgG~ 182 (201)
T PF03185_consen 167 LFHSLFWPSLMLVGGV 182 (201)
T ss_dssp ----------------
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5999999999887764
No 73
>PF11390 FdsD: NADH-dependant formate dehydrogenase delta subunit FdsD; InterPro: IPR021074 FdsD is the delta subunit of the enzyme formate dehydrogenase. This subunit may play a role in maintaining the quaternary structure by means of electrostatic interactions with the other subunits []. The delta subunit is not involved in the active centre of the enzyme [].
Probab=26.71 E-value=99 Score=21.54 Aligned_cols=24 Identities=13% Similarity=0.304 Sum_probs=18.4
Q ss_pred HHHHHHHhCCCCCChhHHHHHHHHHhc
Q psy7269 4 KLQSWVSETSDQWSSNARVICKAWLKD 30 (235)
Q Consensus 4 ~L~e~~~~~~~~~p~~~~~~~~~~l~~ 30 (235)
.+.++++ .||.|++++.+.+++++
T Consensus 25 ~va~Hi~---kFW~PrMR~~l~~~~~~ 48 (61)
T PF11390_consen 25 GVANHIK---KFWEPRMRRQLIAYVDA 48 (61)
T ss_pred HHHHHHH---HhCCHHHHHHHHHHHHh
Confidence 3445553 37999999999999974
No 74
>PLN02286 arginine-tRNA ligase
Probab=26.44 E-value=1.7e+02 Score=29.16 Aligned_cols=83 Identities=12% Similarity=0.153 Sum_probs=49.4
Q ss_pred eeEEEeecCCcchhhhHHHHHHHHhCCC-c----cc----ceeee-cccc----ccCCCCChHHHHhh------------
Q psy7269 91 TLYQFMAKDNVPFHSIMFPATLVAAGDQ-Y----TK----VNHIM-ATGH----KIGTPAPLFRKIEQ------------ 144 (235)
Q Consensus 91 ~~v~fiGkDi~~Fhai~wpa~L~~~~~~-~----~~----p~~i~-~~G~----kiGn~~~~~~~i~~------------ 144 (235)
+++++.|.||.-.-.-++ +++...|.+ . ++ +.-|. ..|- ..|+++.+-+.|++
T Consensus 329 ~~IyVvg~~q~~hf~~v~-~~l~~lG~~~~~~~~~l~h~~~g~V~~~~g~kmStR~G~~v~L~dlldea~~~a~~~~~~~ 407 (576)
T PLN02286 329 WIIYVTDVGQQQHFDMVF-KAAKRAGWLPEDTYPRLEHVGFGLVLGEDGKRFRTRSGEVVRLVDLLDEAKSRSKAALIER 407 (576)
T ss_pred EEEEEEeCcHHHHHHHHH-HHHHHcCCCccccCCceEEEeeccEECCCCCcccCCCCCeeEHHHHHHHHHHHHHHHHHhc
Confidence 679999999975433222 566666631 1 11 11121 2332 35888888888874
Q ss_pred -----------------hhhHHHHHHhcCCCccccccCcccccccCCCHhHHHHHH
Q psy7269 145 -----------------AQVDEWKLKYGGQQSKESSNNKKETKQAEITFSSVEELE 183 (235)
Q Consensus 145 -----------------~~~d~lR~~f~G~~~~~l~~~~pe~~D~~fs~~~~~~~~ 183 (235)
.+.+++|+.+ .+.. ..++.+|+++.+.+.+
T Consensus 408 ~~~~~~~~~~~~~~a~~vg~~Airy~~--------L~~~-~~~~~~Fd~d~~l~~~ 454 (576)
T PLN02286 408 GKDSEWTPEELEQAAEAVGYGAVKYAD--------LKNN-RLTNYTFSFDQMLDLK 454 (576)
T ss_pred cCccccchhhHHHHHHHhhhhhhhhhh--------hhcC-CCCCCccCHHHHHhhc
Confidence 2467777643 2222 3478889999876643
No 75
>PRK12451 arginyl-tRNA synthetase; Reviewed
Probab=24.83 E-value=69 Score=31.68 Aligned_cols=82 Identities=13% Similarity=0.197 Sum_probs=47.4
Q ss_pred eeEEEeecCCcchhhhHHHHHHHHhCCCc--cc----ceeeecccc----ccCCCCChHHHHhh----------------
Q psy7269 91 TLYQFMAKDNVPFHSIMFPATLVAAGDQY--TK----VNHIMATGH----KIGTPAPLFRKIEQ---------------- 144 (235)
Q Consensus 91 ~~v~fiGkDi~~Fhai~wpa~L~~~~~~~--~~----p~~i~~~G~----kiGn~~~~~~~i~~---------------- 144 (235)
++++++|.||.-.-.-++ +.+...|... ++ +..|...|- ..|+++.+.++|++
T Consensus 326 ~~IyV~g~dq~~h~~~l~-~~~~~lg~~~~~~l~h~~~g~V~~~g~kmStR~G~~v~l~dLldea~~~a~~~~~~~~~~l 404 (562)
T PRK12451 326 KALYVVGPEQSLHFNQFF-TVLKKLGYTWVDGMEHVPFGLILKDGKKMSTRKGRVVLLEEVLEEAIELAKQNIEEKNPNL 404 (562)
T ss_pred EEEEEeCCcHHHHHHHHH-HHHHHcCCCcccCeEEEeeeeEecCCCCCcCCCCCeeEHHHHHHHHHHHHHHHHHhhcccc
Confidence 679999999975322222 5555555211 11 122323343 35889999999876
Q ss_pred ---------hhhHHHHHHhcCCCccccccCcccccccCCCHhHHHHH
Q psy7269 145 ---------AQVDEWKLKYGGQQSKESSNNKKETKQAEITFSSVEEL 182 (235)
Q Consensus 145 ---------~~~d~lR~~f~G~~~~~l~~~~pe~~D~~fs~~~~~~~ 182 (235)
.+.+++||.+ .+. ...++.+|+++.+.+.
T Consensus 405 ~~~~~~a~~vg~~Airy~~--------l~~-~~~~~~~Fd~d~~l~~ 442 (562)
T PRK12451 405 KQKEEVAKQVGVGAVIFHD--------LKN-ERMHNIEFSLENMLKF 442 (562)
T ss_pred ccHHHHHHHhccceeeeHH--------hhc-CCCCCceECHHHHhCc
Confidence 3455666532 122 2346788999887553
No 76
>cd07375 Anticodon_Ia_like Anticodon-binding domain of class Ia aminoacyl tRNA synthetases and similar domains. This domain is found in a variety of class Ia aminoacyl tRNA synthetases, C-terminal to the catalytic core domain. It recognizes and specifically binds to the anticodon of the tRNA. Aminoacyl tRNA synthetases catalyze the transfer of cognate amino acids to the 3'-end of their tRNAs by specifically recognizing cognate from non-cognate amino acids. Members include valyl-, leucyl-, isoleucyl-, cysteinyl-, arginyl-, and methionyl-tRNA synthethases. This superfamily also includes a domain from MshC, an enzyme in the mycothiol biosynthetic pathway.
Probab=20.43 E-value=90 Score=22.54 Aligned_cols=26 Identities=8% Similarity=-0.129 Sum_probs=19.2
Q ss_pred HHHHHhhhhHhhhhhhhhcccccccc
Q psy7269 184 AAVATQGALLGTVDVIVMSSRTGAYA 209 (235)
Q Consensus 184 ~lv~~~GNlV~R~~~~~~~~~~~~~~ 209 (235)
+-+..+||++.|++.++.++..|..|
T Consensus 5 ~~~~~~~n~~~r~~~~~~~~~~~~~~ 30 (117)
T cd07375 5 KQARAFLNRLYRLLSFFRKALGGTQP 30 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 34566999999999997766655443
Done!