Query psy7269
Match_columns 235
No_of_seqs 201 out of 1445
Neff 6.5
Searched_HMMs 29240
Date Fri Aug 16 22:23:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7269.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7269hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kfl_A Methionyl-tRNA syntheta 100.0 2.4E-41 8.2E-46 326.0 8.2 191 1-212 198-417 (564)
2 1rqg_A Methionyl-tRNA syntheta 100.0 1.7E-40 5.6E-45 328.3 9.9 198 1-209 195-420 (722)
3 4dlp_A Aminoacyl-tRNA syntheta 100.0 4.5E-39 1.6E-43 308.1 10.2 191 1-211 192-399 (536)
4 3h99_A Methionyl-tRNA syntheta 100.0 7.1E-39 2.4E-43 308.1 8.3 193 1-209 210-422 (560)
5 3u1f_A Methionyl-tRNA syntheta 100.0 1.5E-36 5E-41 290.2 7.8 194 1-214 181-403 (542)
6 2x1l_A Methionyl-tRNA syntheta 100.0 5.2E-34 1.8E-38 271.9 6.2 189 1-209 180-386 (524)
7 2d5b_A Methionyl-tRNA syntheta 100.0 2.5E-33 8.5E-38 265.5 7.6 189 1-209 166-373 (500)
8 2csx_A Methionyl-tRNA syntheta 100.0 3.6E-32 1.2E-36 257.7 8.4 185 1-207 169-369 (497)
9 1ile_A Ilers, isoleucyl-tRNA s 99.9 1.3E-27 4.3E-32 239.1 7.6 176 1-198 411-655 (821)
10 1gax_A Valrs, valyl-tRNA synth 99.9 8.1E-27 2.8E-31 234.3 10.6 173 1-194 366-587 (862)
11 1wkb_A Leucyl-tRNA synthetase; 99.9 7.7E-26 2.6E-30 225.8 8.7 180 1-197 474-712 (810)
12 1ffy_A Isoleucyl-tRNA syntheta 99.9 2.6E-25 8.8E-30 224.7 12.5 178 1-200 419-659 (917)
13 1wz2_A Leucyl-tRNA synthetase; 99.9 8.9E-25 3.1E-29 221.9 7.9 180 2-198 475-713 (967)
14 2v0c_A Aminoacyl-tRNA syntheta 99.8 7.9E-19 2.7E-23 176.8 9.3 161 19-196 396-698 (878)
15 4arc_A Leucine--tRNA ligase; l 99.7 3.2E-18 1.1E-22 172.2 11.9 162 19-197 414-701 (880)
16 3c8z_A Cysteinyl-tRNA syntheta 99.5 2.2E-14 7.5E-19 133.4 9.1 129 42-196 207-352 (414)
17 1li5_A Cysrs, cysteinyl-tRNA s 99.3 2.6E-12 8.8E-17 121.1 8.2 94 92-196 222-326 (461)
18 3sp1_A Cysteinyl-tRNA syntheta 98.9 2.6E-09 8.9E-14 101.5 8.5 106 78-199 246-367 (501)
19 1iq0_A Arginyl-tRNA synthetase 98.0 5.1E-06 1.7E-10 80.3 4.9 125 42-206 336-490 (592)
20 2zue_A Arginyl-tRNA synthetase 97.9 5.5E-06 1.9E-10 80.7 3.9 66 131-205 428-523 (629)
21 3tqo_A Cysteinyl-tRNA syntheta 97.6 9.2E-05 3.2E-09 69.7 7.6 95 92-197 225-330 (462)
22 3fnr_A Arginyl-tRNA synthetase 97.1 0.00054 1.9E-08 64.4 6.0 103 91-205 237-356 (464)
23 1irx_A Lysyl-tRNA synthetase; 96.9 0.00059 2E-08 64.8 4.1 88 93-192 233-336 (523)
24 1f7u_A Arginyl-tRNA synthetase 66.7 7.6 0.00026 37.4 5.7 101 91-203 366-503 (607)
25 2llk_A Cyclin-D-binding MYB-li 37.2 29 0.001 23.9 3.2 39 167-207 19-57 (73)
No 1
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}
Probab=100.00 E-value=2.4e-41 Score=326.03 Aligned_cols=191 Identities=19% Similarity=0.313 Sum_probs=166.9
Q ss_pred ChHHHHHHHHhCCCC-CChhHHHHHHHHHhcCCCCcccee----ccCCccccCCCCCCCCeEEEeccCccchhhccccc-
Q psy7269 1 IEDKLQSWVSETSDQ-WSSNARVICKAWLKDGLKPRCITR----DLKWGIPVPLPGFENKVFYVWFDAPIGYMSLTQSY- 74 (235)
Q Consensus 1 ~~~~L~e~~~~~~~~-~p~~~~~~~~~~l~~gL~Dw~ISR----~~~WGIpvP~~~~~~~viyVWfDa~~~yls~~~~~- 74 (235)
|+++|.+|+++++.+ +|++.++++.+||++||+|||||| +++||||||.+ +++|+||||||+++|+|++ +|
T Consensus 198 ~~~~l~~~~~~~~~~i~P~~~~~~~~~wl~~gl~D~~ISR~~~~~~~WGipiP~~--~~~v~yVWfDa~~~y~s~~-~~~ 274 (564)
T 3kfl_A 198 FRERLLKYFHDHPNCIVPEFRRREVIKTVEKGLFDLSISRKRESVMNWSIPVPGD--ERHCIYVWLDALFNYYTGA-LTR 274 (564)
T ss_dssp GHHHHHHHHHHCTTSEESHHHHHHHHHHHHHCCCCEECEEEGGGGTTCSCEETTE--EEEEECHHHHHHTHHHHHH-HEE
T ss_pred HHHHHHHHHHhCCCccCCHHHHHHHHHHHhCCCCCccccCcCCCCCCCCeecCCC--CCCEEEEeccCcHHHHHHh-Ccc
Confidence 578999999988765 588999999999998999999999 89999999965 8999999999999999986 55
Q ss_pred chh---------h--hhhcCCCCCCCceeEEEeecCCcchhhhHHHHHHHHhCCCcccceeeecccc----------ccC
Q psy7269 75 CGQ---------Y--EAWWKSAPQSKITLYQFMAKDNVPFHSIMFPATLVAAGDQYTKVNHIMATGH----------KIG 133 (235)
Q Consensus 75 ~~~---------~--~~~W~~~~~~~~~~v~fiGkDi~~Fhai~wpa~L~~~~~~~~~p~~i~~~G~----------kiG 133 (235)
+++ + +++||++ +|++||||++||+++|||+|++.|. .+|++|++||| |.|
T Consensus 275 ~~~~~~~~~~~~~~~~~~wp~d-------v~~~GkDii~FH~~~wpa~L~a~g~--~~~~~v~~hg~v~~~G~KMSKS~G 345 (564)
T 3kfl_A 275 VATDGTETLDEDHHALNRWPAD-------VHVVGKDILKFHAIYWPAFLMSAEL--PLPERLVSHGWWTKDHKKISKSLG 345 (564)
T ss_dssp ECTTSCEEECSSSTTTTCCSCS-------EEEEEGGGHHHHHTHHHHHHHHTTC--CCCSCEEEECCEEETTEECCTTTT
T ss_pred ccccccccchhcchhhhcCccc-------eEEEeecccchHHHHHHHHHHhCCC--CCCcEEEEcccEeeCCccccccCC
Confidence 532 7 8899953 9999999999999999999999985 48999999998 578
Q ss_pred CCCChHHHHhhhhhHHHHHHhcCCCccccccCcccccccCCCHhHHHHHH--HHHHHhhhhHhhhhhhhhcccccccccc
Q psy7269 134 TPAPLFRKIEQAQVDEWKLKYGGQQSKESSNNKKETKQAEITFSSVEELE--AAVATQGALLGTVDVIVMSSRTGAYAVT 211 (235)
Q Consensus 134 n~~~~~~~i~~~~~d~lR~~f~G~~~~~l~~~~pe~~D~~fs~~~~~~~~--~lv~~~GNlV~R~~~~~~~~~~~~~~~~ 211 (235)
|++.|.+.|+++|+|++|+++ ++..|.++|.+|+++.+++.. ++++.+||+++|+++++. +-.|..|..
T Consensus 346 NvV~p~d~i~~~G~DalR~~l--------l~~~~~~~D~~fs~~~~~~~~n~~l~~~l~N~~~R~~~~~~-~~~g~~p~~ 416 (564)
T 3kfl_A 346 NAFDPVEKAKEFGIDALKYFL--------MRESNFQDDGDYSDKNMVARLNGELADTLGNLVSRCVAPKI-NVNGMWPEP 416 (564)
T ss_dssp CCCCHHHHHHHHCHHHHHHHH--------HHHCCSSCCEECCHHHHHHHHHHTTTTTHHHHHHHHHCTTT-STTSBCCCC
T ss_pred CCCCHHHHHHHcCcHHHHHHH--------HHcCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCcCCCC
Confidence 999999999999999999844 444678899999999998853 799999999999999987 555666654
Q ss_pred c
Q psy7269 212 S 212 (235)
Q Consensus 212 ~ 212 (235)
+
T Consensus 417 ~ 417 (564)
T 3kfl_A 417 A 417 (564)
T ss_dssp C
T ss_pred C
Confidence 3
No 2
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=100.00 E-value=1.7e-40 Score=328.34 Aligned_cols=198 Identities=29% Similarity=0.599 Sum_probs=170.8
Q ss_pred ChHHHHHHHHhCCCCCChhHHHHHHHHHhcCCCCccceeccCCccccCCC--CCCCCeEEEeccCccchhhcccccch--
Q psy7269 1 IEDKLQSWVSETSDQWSSNARVICKAWLKDGLKPRCITRDLKWGIPVPLP--GFENKVFYVWFDAPIGYMSLTQSYCG-- 76 (235)
Q Consensus 1 ~~~~L~e~~~~~~~~~p~~~~~~~~~~l~~gL~Dw~ISR~~~WGIpvP~~--~~~~~viyVWfDa~~~yls~~~~~~~-- 76 (235)
|+++|++|+++++ ||++.++++.+||++||+|||||||+.||+|+|.+ +.+++++||||||+++|++++.+|++
T Consensus 195 ~~~~l~~~~~~~~--wp~~~~~~~~~wl~~gl~dw~ISR~~~WG~piP~~~~g~~~~~iyvW~da~i~y~~~~~~~~~~~ 272 (722)
T 1rqg_A 195 FAERLKRWIEKQP--WKPNVKNMVLSWIEEGLEERAITRDLNWGIPVPLDEEDMKGKVLYVWFEAPIGYISITIEHFKRI 272 (722)
T ss_dssp THHHHHHHHHSSC--CCHHHHHHHHHHHTTCCCCEECEECCSSSCBCSCCCSSSTTCEECHHHHGGGHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCC--CCHHHHHHHHHHHHCCCcccceeccccCccccCccccCCCCCEEEEEeccccchhhhHHHHHhhc
Confidence 6789999998774 99999999999998899999999999999999974 45899999999999999988755542
Q ss_pred ----hhhhhcCCCCCCCceeEEEeecCCcchhhhHHHHHHHHhCC--------Ccccceeeecccc----------ccCC
Q psy7269 77 ----QYEAWWKSAPQSKITLYQFMAKDNVPFHSIMFPATLVAAGD--------QYTKVNHIMATGH----------KIGT 134 (235)
Q Consensus 77 ----~~~~~W~~~~~~~~~~v~fiGkDi~~Fhai~wpa~L~~~~~--------~~~~p~~i~~~G~----------kiGn 134 (235)
+|++||++ .++++..+||+||||++||+++|||+|++.+. ++++|+++++||| |.||
T Consensus 273 g~~~~~~~~w~~-pd~~~~~~h~~GkDii~fH~~~wpA~l~~~~~~l~~d~~rg~~~Pk~v~~hG~v~~~G~KMSKS~GN 351 (722)
T 1rqg_A 273 GKPNEWKKYWLN-IDGQTRVIHFIGKDNIPFHAIFWPAFLMAYGKYKDEEVEAEWNLPYDIPANEYLTLEGKKFSTSRNW 351 (722)
T ss_dssp TCTTTTHHHHBC-SSCCEEEEEEEEGGGHHHHHTHHHHHHHTTCCBCSSSCCBCBCCCSBCCEECCEEETTEECBTTTTB
T ss_pred CCchHHHhccCC-CCCCCeeEEEccccccccchhhhHHHHhccCCCcccccccCCCCCCEEEEeeeEEeCCeeeeeeCCC
Confidence 57889982 02456789999999999999999999999763 3678999999998 5789
Q ss_pred CCChHHHHhhhhhHHHHHHhcCCCccccccCcccccccCCCHhHHHHHH--HHHHHhhhhHhhhhhhhhcccccccc
Q psy7269 135 PAPLFRKIEQAQVDEWKLKYGGQQSKESSNNKKETKQAEITFSSVEELE--AAVATQGALLGTVDVIVMSSRTGAYA 209 (235)
Q Consensus 135 ~~~~~~~i~~~~~d~lR~~f~G~~~~~l~~~~pe~~D~~fs~~~~~~~~--~lv~~~GNlV~R~~~~~~~~~~~~~~ 209 (235)
++.|.+.|++||+|.+|++ ++...|.++|.+|+++++.+.. ++++++||+++|+.+++.++-.|..|
T Consensus 352 vV~p~d~i~~ygaDalR~~--------ll~~~~~~~D~~fs~~~~~~~~n~~l~~~l~N~~~R~~~~~~k~~~~~~~ 420 (722)
T 1rqg_A 352 AIWVHEFLDVFPADYLRYY--------LTTIMPETRDSDFSFSDFKVRINEELVNNLGNFVHRALTFVNRYFDGVVP 420 (722)
T ss_dssp SCBHHHHTTTSCHHHHHHH--------HHHTCCSSSCEEECHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHSTTBCC
T ss_pred cCCHHHHHHhcCchHHHHH--------HHhcCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 9999999999999999984 4556678999999999998854 79999999999999999776555555
No 3
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Probab=100.00 E-value=4.5e-39 Score=308.05 Aligned_cols=191 Identities=23% Similarity=0.395 Sum_probs=162.9
Q ss_pred ChHHHHHHHHhCCCC-CChhHHHHHHHHHhcCCCCccceec-cCCccccCCCCCCCCeEEEeccCccchhhcccccch--
Q psy7269 1 IEDKLQSWVSETSDQ-WSSNARVICKAWLKDGLKPRCITRD-LKWGIPVPLPGFENKVFYVWFDAPIGYMSLTQSYCG-- 76 (235)
Q Consensus 1 ~~~~L~e~~~~~~~~-~p~~~~~~~~~~l~~gL~Dw~ISR~-~~WGIpvP~~~~~~~viyVWfDa~~~yls~~~~~~~-- 76 (235)
|+++|.+++++++.+ +|+..++++.+||+++|+||||||| .+||||||.+ +++++||||||+++|++++ +|++
T Consensus 192 ~~~~l~~~~~~~~~~i~P~~~~~~~~~~l~~~l~D~~ISR~~~~WGipiP~~--~~~v~yvWfda~~~y~s~~-~~~~~~ 268 (536)
T 4dlp_A 192 YQDKLLDLYENNPGFIMPAERRNEIVSFVKSGLKDLSISRTTFDWGIPVPGD--EKHVMYVWVDALTNYITAL-GYPDTT 268 (536)
T ss_dssp GHHHHHHHHHHCTTSEESHHHHHHHHHHHHTCCCCEECEEC--CCSCBCTTC--TTSEECHHHHHHHHHHHTT-TTTCTT
T ss_pred HHHHHHHHHHhCCCccCcHHHHHHHHHHHhcCCCccCCccCCCcCCeeCCCC--CCCceEEeeCCcHHHHHhc-CCCCCc
Confidence 578999999988655 5889999999999989999999997 6799999976 8999999999999999986 7763
Q ss_pred -hhhhhcCCCCCCCceeEEEeecCCcchhhhHHHHHHHHhCCCcccceeeecccc----------ccCCCCChHHHHhhh
Q psy7269 77 -QYEAWWKSAPQSKITLYQFMAKDNVPFHSIMFPATLVAAGDQYTKVNHIMATGH----------KIGTPAPLFRKIEQA 145 (235)
Q Consensus 77 -~~~~~W~~~~~~~~~~v~fiGkDi~~Fhai~wpa~L~~~~~~~~~p~~i~~~G~----------kiGn~~~~~~~i~~~ 145 (235)
+++++||++ +|++|+||++||+++|||+|++.|. .+|++|++||| |.||++.|.+.|+++
T Consensus 269 ~~~~~~~p~d-------v~~~G~D~~~fh~~~~~a~l~a~g~--~~~~~v~~hg~v~~~G~KMSKS~GNvi~p~d~i~~~ 339 (536)
T 4dlp_A 269 DERWAYWPAN-------AHIIGKDISRFHAVYWPAFLMSAQL--PLPKRVFAHGFLFNRGEKMSKSVGNVIDPFELVERY 339 (536)
T ss_dssp SGGGGGCSCS-------EEEEEGGGHHHHHTHHHHHHHHTTC--CCCSCEEEECCEEC------------CCHHHHHHHH
T ss_pred hHHHhhCCcc-------eEEeechHHHHHHHHHHHHHHHCCC--CCCcEEEeeeeEeeCCceecccCCCCCCHHHHHHHc
Confidence 588999953 9999999999999999999999985 47899999998 578999999999999
Q ss_pred hhHHHHHHhcCCCccccccCcccccccCCCHhHHHHHH--HHHHHhhhhHhhhhhhhhcccccccccc
Q psy7269 146 QVDEWKLKYGGQQSKESSNNKKETKQAEITFSSVEELE--AAVATQGALLGTVDVIVMSSRTGAYAVT 211 (235)
Q Consensus 146 ~~d~lR~~f~G~~~~~l~~~~pe~~D~~fs~~~~~~~~--~lv~~~GNlV~R~~~~~~~~~~~~~~~~ 211 (235)
|+|++|+++ ++..+.++|.+|+++.+.+.. ++++++||+++|+++++.++..|..|..
T Consensus 340 GaDalR~~l--------l~~~~~~~d~~fs~~~~~~~~n~~l~~~l~N~~~R~~~~~~~~~~~~~p~~ 399 (536)
T 4dlp_A 340 GLDQLRYFL--------MREVPFGQDGSYSHEAIVNRTNADLANDLGNLAQRSLSMIAKNCEGKVPQP 399 (536)
T ss_dssp CHHHHHHHH--------HHHSCTTSCEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHSTTBCCCC
T ss_pred CcHHHHHHH--------HhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCc
Confidence 999999854 444567899999999998754 7899999999999999987777766643
No 4
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=100.00 E-value=7.1e-39 Score=308.14 Aligned_cols=193 Identities=24% Similarity=0.452 Sum_probs=168.5
Q ss_pred ChHHHHHHHHhCCCCCChhHHHHHHHHHhcCCCCccceecc-CCccccCCCCCCCCeEEEeccCccchhhcccccc----
Q psy7269 1 IEDKLQSWVSETSDQWSSNARVICKAWLKDGLKPRCITRDL-KWGIPVPLPGFENKVFYVWFDAPIGYMSLTQSYC---- 75 (235)
Q Consensus 1 ~~~~L~e~~~~~~~~~p~~~~~~~~~~l~~gL~Dw~ISR~~-~WGIpvP~~~~~~~viyVWfDa~~~yls~~~~~~---- 75 (235)
|+++|.+|+++. .||++.++.+.+||+++++||||||++ +||||||.+ +++|+||||||+++|++++.+|+
T Consensus 210 ~~~~l~~~~~~~--~~~~~~~~~~~~~l~~~l~D~~IsR~~~~WG~~iP~~--~~~viyvW~da~~~y~s~~~~~~~~~~ 285 (560)
T 3h99_A 210 FSEMLQAWTRSG--ALQEQVANKMQEWFESGLQQWDISRDAPYFGFEIPNA--PGKYFYVWLDAPIGLMGSFKNLCDKRG 285 (560)
T ss_dssp GHHHHHHHHHTS--CSCHHHHHHHHHHHHHCCCCEECEEESSCSSCBCTTC--TTEEECHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC--CCCHHHHHHHHHHHhcCCCCCCccccCCcCCeeCCCC--CCceEEeCcccchhHHHHHHHHhhccC
Confidence 578999999874 599999999999999899999999998 889999976 89999999999999999876664
Q ss_pred --hhhhhhcCCCCCCCceeEEEeecCCcchhhhHHHHHHHHhCCCcccceeeecccc----------ccCCCCChHHHHh
Q psy7269 76 --GQYEAWWKSAPQSKITLYQFMAKDNVPFHSIMFPATLVAAGDQYTKVNHIMATGH----------KIGTPAPLFRKIE 143 (235)
Q Consensus 76 --~~~~~~W~~~~~~~~~~v~fiGkDi~~Fhai~wpa~L~~~~~~~~~p~~i~~~G~----------kiGn~~~~~~~i~ 143 (235)
.+|+++||+ +.+++++||+|+||++||+++|||+|++.|. ++|+++++||| |.||+++|.+.|+
T Consensus 286 ~~~~~~~~wp~--~~~~~~~~~~G~D~~~fh~~~~~a~l~~~g~--~~p~~v~~hg~v~~~G~KMSKS~GNvv~p~d~i~ 361 (560)
T 3h99_A 286 DSVSFDEYWKK--DSTAELYHFIGKDIVYFLSLFWPAMLEGSNF--RKPSNLFVHGYVTVNGAKMSKSRGTFIKASTWLN 361 (560)
T ss_dssp CSSHHHHHHBT--TCCSEEEEEEEGGGHHHHHTHHHHHHHHTTB--CCCSEEEEECCEEETTEECCTTTTCCCBHHHHHH
T ss_pred ChhhHHHhCcC--CCCceeEEEeccccchhHHHHHHHHHHhCCC--CCCcEEEEEeEEEeCCeeccccCCCcCCHHHHHH
Confidence 368899995 5677899999999999999999999999984 58899999998 5789999999999
Q ss_pred hhhhHHHHHHhcCCCccccccCcccc-cccCCCHhHHHHHH--HHHHHhhhhHhhhhhhhhcccccccc
Q psy7269 144 QAQVDEWKLKYGGQQSKESSNNKKET-KQAEITFSSVEELE--AAVATQGALLGTVDVIVMSSRTGAYA 209 (235)
Q Consensus 144 ~~~~d~lR~~f~G~~~~~l~~~~pe~-~D~~fs~~~~~~~~--~lv~~~GNlV~R~~~~~~~~~~~~~~ 209 (235)
+||+|++|+++ +...|.+ +|.+|+++.+.+.. ++++++||+++|+++++.++..|..|
T Consensus 362 ~~GaDalR~~l--------l~~~~~~~~d~~f~~~~~~~~~~~~l~~~l~n~~~R~~~~~~~~~~~~~~ 422 (560)
T 3h99_A 362 HFDADSLRYYY--------TAKLSSRIDDIDLNLEDFVQRVNADIVNKVVNLASRNAGFINKRFDGVLA 422 (560)
T ss_dssp HSCHHHHHHHH--------HHHCCSSCCCEEECHHHHHHHHHHHCCCCCTHHHHTTHHHHHHHSTTBCC
T ss_pred HcCcHHHHHHH--------HHhCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 99999999844 4455656 89999999998743 88999999999999998776666544
No 5
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*
Probab=100.00 E-value=1.5e-36 Score=290.19 Aligned_cols=194 Identities=20% Similarity=0.325 Sum_probs=162.3
Q ss_pred ChHHHHHHHHhCCCC-CChhHHHHHHHHHhcCCCCccceeccC----CccccCCCCCCCCeEEEeccCccchhhcccccc
Q psy7269 1 IEDKLQSWVSETSDQ-WSSNARVICKAWLKDGLKPRCITRDLK----WGIPVPLPGFENKVFYVWFDAPIGYMSLTQSYC 75 (235)
Q Consensus 1 ~~~~L~e~~~~~~~~-~p~~~~~~~~~~l~~gL~Dw~ISR~~~----WGIpvP~~~~~~~viyVWfDa~~~yls~~~~~~ 75 (235)
++++|.+|+++++.. +|+..++...+|++++|+|||||||+. ||||||.+ +++++|||+|++++|++++..+.
T Consensus 181 ~~~~l~~~~~~~~~~~~P~~~~~~~~~~~~~~l~Dw~ISRq~~~~~~WGipiP~~--~~~~~~vw~da~~~~~~~~~~~~ 258 (542)
T 3u1f_A 181 FRERLLEWYHANPGCIVPEFRRREVIRAVEKGLPDLSVSRARATLHNWAIPVPGN--PDHXVYVWLDALTNYLTGSRLRV 258 (542)
T ss_dssp GHHHHHHHHHHCTTSEESHHHHHHHHHHHHHCCCCEECEEEGGGGTTCSCEETTE--EEEEECHHHHHHTHHHHHHTEEE
T ss_pred HHHHHHHHHhhcccccCCchhhHhHhhhhhccccccCccccccCcCCCCCccCCC--cCeeeeeeeccchhhhhhhhccc
Confidence 578999999988765 588999999999999999999999987 99999976 89999999999999999874432
Q ss_pred ----------hhhhh--hcCCCCCCCceeEEEeecCCcchhhhHHHHHHHHhCCCcccceeeecccc----------ccC
Q psy7269 76 ----------GQYEA--WWKSAPQSKITLYQFMAKDNVPFHSIMFPATLVAAGDQYTKVNHIMATGH----------KIG 133 (235)
Q Consensus 76 ----------~~~~~--~W~~~~~~~~~~v~fiGkDi~~Fhai~wpa~L~~~~~~~~~p~~i~~~G~----------kiG 133 (235)
+++.+ .||++ +|++|+||++||+++|||++++.|.+ +|+.+++||+ |+|
T Consensus 259 ~~~g~~~~~~d~~~~~~~~p~d-------~~~~G~D~~~fh~~~~~a~l~~~g~~--~~~~v~~hg~l~~~G~KMSKSlG 329 (542)
T 3u1f_A 259 DESGKEVSLVDDFNELERFPAD-------VHVIGKDILKFHAIYWPAFLLSAGLP--LPKKIVAHGWWTKDRKKISKSLG 329 (542)
T ss_dssp CTTSCEEEECSSGGGTTCCSCS-------EEEEEGGGHHHHHTHHHHHHHHHTCC--CCSCEEEECCCEETTBCCBTTTT
T ss_pred cccCCcccccchhhhhcCCcce-------EEEecccccccccchhHHHHHhhccc--ccceeccccceecCCceeccccC
Confidence 22322 34532 99999999999999999999999954 7899999998 689
Q ss_pred CCCChHHHHhhhhhHHHHHHhcCCCccccccCcccccccCCCHhHHHHHH--HHHHHhhhhHhhhhhhhhcccccccccc
Q psy7269 134 TPAPLFRKIEQAQVDEWKLKYGGQQSKESSNNKKETKQAEITFSSVEELE--AAVATQGALLGTVDVIVMSSRTGAYAVT 211 (235)
Q Consensus 134 n~~~~~~~i~~~~~d~lR~~f~G~~~~~l~~~~pe~~D~~fs~~~~~~~~--~lv~~~GNlV~R~~~~~~~~~~~~~~~~ 211 (235)
|+++|.+.|++||+|++|++ +++..|.++|.+|+++++++.. +++|++||+++|++.+. .+-.+..|.+
T Consensus 330 Nvi~p~~~i~~ygaD~lR~~--------l~~~~~~~~d~~fs~~~~~~~~n~~l~n~l~N~~~r~~~~~-~~~~~~~~~~ 400 (542)
T 3u1f_A 330 NVFDPVEKAEEFGYDALKYF--------LLRESGFSDDGDYSDKNMIARLNGELADTLGNLVMRCTSAK-INVNGEWPSP 400 (542)
T ss_dssp BCCCHHHHHHHHCHHHHHHH--------HHHHCCTTSCCEECHHHHHHHHHHTTTTTHHHHHHHHHCTT-TSTTSBCCCC
T ss_pred CCCChhHHHhhcCchHHHHH--------HHhcCcccccccccHHHHHHHhhhHHHHHHHHHHHHHHHhh-hcccCCCCcc
Confidence 99999999999999999983 3455678899999999998854 78999999999999875 3444555554
Q ss_pred ccc
Q psy7269 212 SEF 214 (235)
Q Consensus 212 ~~f 214 (235)
+..
T Consensus 401 ~~~ 403 (542)
T 3u1f_A 401 AAY 403 (542)
T ss_dssp CCC
T ss_pred chh
Confidence 443
No 6
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Probab=100.00 E-value=5.2e-34 Score=271.91 Aligned_cols=189 Identities=22% Similarity=0.371 Sum_probs=160.1
Q ss_pred ChHHHHHHHHhCCCC-CChhHHHHHHHHHhcCCCCccceecc-CCccccCCCCCCCCeEEEeccCccchhhcccccch--
Q psy7269 1 IEDKLQSWVSETSDQ-WSSNARVICKAWLKDGLKPRCITRDL-KWGIPVPLPGFENKVFYVWFDAPIGYMSLTQSYCG-- 76 (235)
Q Consensus 1 ~~~~L~e~~~~~~~~-~p~~~~~~~~~~l~~gL~Dw~ISR~~-~WGIpvP~~~~~~~viyVWfDa~~~yls~~~~~~~-- 76 (235)
|+++|.+++++++.+ +|+..++.+.+|++++++|||||||+ .||+|+|.+ +++++||||||+++|+++. +|++
T Consensus 180 ~~~~l~~~~~~~~~~i~p~~~~~~~~~~~~~~l~Dw~iSRqr~~WG~~iP~~--~~~~~yvWfds~~~~~~~~-g~p~~~ 256 (524)
T 2x1l_A 180 YTDRLLALYEEHPEFIGPDARRNEIVSFVSGGLKDLSISRTTFDWGVPVPDH--PDHVMYVWVDALTNYLTGV-GFPDTE 256 (524)
T ss_dssp SHHHHHHHHHHCGGGEESHHHHHHHHHHHTTCCCCEECEESSCCSSCEETTE--EEEEECHHHHHHTHHHHTT-TTTCTT
T ss_pred HHHHHHHHHHhCCCeeCCHHHHHHHHHHHHcCCcccceECCCCCcCccCCCC--CCCEEEEecCCchHHHHHc-CCCCCc
Confidence 578999999876543 59999999999998789999999996 599999954 7899999999999999875 7763
Q ss_pred --hhhhhcCCCCCCCceeEEEeecCCcchhhhHHHHHHHHhCCCcccceeeecccc----------ccCCCCChHHHHhh
Q psy7269 77 --QYEAWWKSAPQSKITLYQFMAKDNVPFHSIMFPATLVAAGDQYTKVNHIMATGH----------KIGTPAPLFRKIEQ 144 (235)
Q Consensus 77 --~~~~~W~~~~~~~~~~v~fiGkDi~~Fhai~wpa~L~~~~~~~~~p~~i~~~G~----------kiGn~~~~~~~i~~ 144 (235)
.+.++||.| +|++|+||++||+++|||++++.|. .+|+++++||| |.||++.|.+.|++
T Consensus 257 ~~~~~~~~p~d-------i~~~G~D~~~fh~~~~~a~l~~~g~--~~~~~v~~hG~v~~~G~KMSKS~GN~v~p~d~i~~ 327 (524)
T 2x1l_A 257 SESFRRYWPAD-------LHMIGKDIIRFHTVYWPAFLMSAGL--PLPKRIFAHGWLLNRGEKMSKSIGNVVDPVNLVDT 327 (524)
T ss_dssp SHHHHHHCSCS-------EEEEEGGGHHHHHTHHHHHHHHHTC--CCCSCEEEECCEEECSCSEETTTEESSCHHHHHHH
T ss_pred hHHHHhhCCCe-------EEEEeechhHhHHHHHHHHHHHCCC--CCCcEEEECcEEEeCCcccCCcCCCCCCHHHHHHH
Confidence 477899953 9999999999999999999999885 47899999998 57899999999999
Q ss_pred hhhHHHHHHhcCCCccccccCcccccccCCCHhHHHHHH--HHHHHhhhhHhhhhhhhhcccccccc
Q psy7269 145 AQVDEWKLKYGGQQSKESSNNKKETKQAEITFSSVEELE--AAVATQGALLGTVDVIVMSSRTGAYA 209 (235)
Q Consensus 145 ~~~d~lR~~f~G~~~~~l~~~~pe~~D~~fs~~~~~~~~--~lv~~~GNlV~R~~~~~~~~~~~~~~ 209 (235)
+|+|++|+.+ +...+..+|.+|+++.+.+.. ++++++||+++|+..++.+...+..|
T Consensus 328 ~g~DalR~~l--------l~~~~~~~d~~fs~~~l~~~~~~~l~n~l~n~~~r~~~~~~~~~~~~~~ 386 (524)
T 2x1l_A 328 FGLDQVRYFL--------LREVPFGQDGSYNEDAIIGRVNADLANELGNLAQRSLSMVAKNLGAAVP 386 (524)
T ss_dssp HCHHHHHHHH--------HHHSCTTSCEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHSTTBCC
T ss_pred cChHHHHHHH--------HhcCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 9999999844 344567899999999998754 57889999999999887654444333
No 7
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A
Probab=99.98 E-value=2.5e-33 Score=265.46 Aligned_cols=189 Identities=24% Similarity=0.425 Sum_probs=159.9
Q ss_pred ChHHHHHHHHhCCCC-CChhHHHHHHHHHhcCCCCcccee--c-cCCccccCCCCCCCCeEEEeccCccchhhcccccch
Q psy7269 1 IEDKLQSWVSETSDQ-WSSNARVICKAWLKDGLKPRCITR--D-LKWGIPVPLPGFENKVFYVWFDAPIGYMSLTQSYCG 76 (235)
Q Consensus 1 ~~~~L~e~~~~~~~~-~p~~~~~~~~~~l~~gL~Dw~ISR--~-~~WGIpvP~~~~~~~viyVWfDa~~~yls~~~~~~~ 76 (235)
|+++|.+++++++.+ .|+..++.+.+|++++++|||||| | ..||+|+|.+ +++++||||||+++|+++. +|+.
T Consensus 166 ~~~~l~~~~~~~~~~~~p~~~~~~~~~~l~~~l~Dw~iSRp~~~~~WG~piP~~--~~~v~~vWfds~~~y~~~~-g~~~ 242 (500)
T 2d5b_A 166 YRPWLQEYIQENPDLIRPEGYRNEVLAMLAEPIGDLSISRPKSRVPWGIPLPWD--ENHVTFVWFDALLNYVSAL-DYPE 242 (500)
T ss_dssp GHHHHHHHHHTCTTSEESHHHHHHHHHHHTSCCCCEECEEETTTCCSSCEETTE--EEEEECHHHHHHTHHHHTT-TTTT
T ss_pred HHHHHHHHHHhCCCeeCCHHHHHHHHHHHhcCCCCeecccccccccCccccCCC--CCCeeEEccccchhhHHHc-CCCC
Confidence 578999999887655 488999999999988999999999 5 4799999976 7899999999999999875 7763
Q ss_pred --hhhhhcCCCCCCCceeEEEeecCCcchhhhHHHHHHHHhCCCcccceeeecccc-----------ccCCCCChHHHHh
Q psy7269 77 --QYEAWWKSAPQSKITLYQFMAKDNVPFHSIMFPATLVAAGDQYTKVNHIMATGH-----------KIGTPAPLFRKIE 143 (235)
Q Consensus 77 --~~~~~W~~~~~~~~~~v~fiGkDi~~Fhai~wpa~L~~~~~~~~~p~~i~~~G~-----------kiGn~~~~~~~i~ 143 (235)
++.++||.| +|+.|+||++||+++|||++++.|. .+|++++.||| |.||++.|.+.|+
T Consensus 243 ~~~~~~~~p~d-------i~~~G~D~~~fh~~~~~a~~~~~g~--~~~~~v~~~G~v~~~~G~KMSKS~GN~i~p~d~i~ 313 (500)
T 2d5b_A 243 GEAYRTFWPHA-------WHLIGKDILKPHAVFWPTMLKAAGI--PMYRHLNVGGFLLGPDGRKMSKTLGNVVDPFALLE 313 (500)
T ss_dssp CHHHHHHGGGE-------EEEEEGGGHHHHHTHHHHHHHHHTC--CCCSEEEEECCEECTTSSCCCTTTTCCCCHHHHHH
T ss_pred CchHHHcCCCe-------EEEEeechhhhHHHHHHHHHHHcCC--CCCcEEEECceEEeCCCCcccccCCCCCCHHHHHH
Confidence 367889843 9999999999999999999999884 47899999997 4788999999999
Q ss_pred hhhhHHHHHHhcCCCccccccCcccccccCCCHhHHHHHH--HHHHHhhhhHhhhhhhhhcccccccc
Q psy7269 144 QAQVDEWKLKYGGQQSKESSNNKKETKQAEITFSSVEELE--AAVATQGALLGTVDVIVMSSRTGAYA 209 (235)
Q Consensus 144 ~~~~d~lR~~f~G~~~~~l~~~~pe~~D~~fs~~~~~~~~--~lv~~~GNlV~R~~~~~~~~~~~~~~ 209 (235)
+||+|++|+.+ +...+.++|.+|+++.+.+.. ++++.+||+++|+..++.+...+..+
T Consensus 314 ~~g~DalR~~l--------l~~~~~~~d~~fs~~~~~~~~~~~l~~~l~n~~~r~~~~~~~~~~~~~~ 373 (500)
T 2d5b_A 314 KYGRDALRYYL--------LREIPYGQDTPVSEEALRTRYEADLADDLGNLVQRTRAMLFRFAEGRIP 373 (500)
T ss_dssp HHCHHHHHHHH--------HHHSCTTSCEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHSTTBCC
T ss_pred hcCcHHHHHHH--------HhcCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 99999999854 333567899999999998854 68899999999999887654444433
No 8
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A*
Probab=99.97 E-value=3.6e-32 Score=257.69 Aligned_cols=185 Identities=24% Similarity=0.437 Sum_probs=155.9
Q ss_pred ChHHHHHHHHhCCCCC-ChhHHHHHHHHHhcCCCCcccee--c-cCCccccCCCCCCCCeEEEeccCccchhhcccccch
Q psy7269 1 IEDKLQSWVSETSDQW-SSNARVICKAWLKDGLKPRCITR--D-LKWGIPVPLPGFENKVFYVWFDAPIGYMSLTQSYCG 76 (235)
Q Consensus 1 ~~~~L~e~~~~~~~~~-p~~~~~~~~~~l~~gL~Dw~ISR--~-~~WGIpvP~~~~~~~viyVWfDa~~~yls~~~~~~~ 76 (235)
|+++|.+++++++.++ |+..++.+.+|++++++|||||| + ..||+|+|.+ +++++||||||+++|+|+.. +
T Consensus 169 ~~~~l~~~~~~~~~~~~p~~~~~~~~~~l~~~~~Dw~isR~~~~~~WG~~iP~~--~~~~i~vW~ds~~~~~s~~~---~ 243 (497)
T 2csx_A 169 YQDKLLELYEKNPEFIQPDYRRNEIISFVKQGLKDLSVTRPRSRVKWGIPVPFD--PEHTIYVWFDALFNYISALE---D 243 (497)
T ss_dssp SHHHHHHHHHHCTTSBCSHHHHHHHHHHHHHCCCCEECEEETTTCCSSEEETTE--EEEEECSHHHHHTHHHHTTT---T
T ss_pred HHHHHHHHHHhCCCeeCcHHHHHHHHHHHhcCCccccccccCCCCCCceecCCC--CCceEEEecccchhhcccCC---C
Confidence 5789999999876554 77788999999988999999999 4 5799999975 68999999999999999862 2
Q ss_pred hhhhhcCCCCCCCceeEEEeecCCcchhhhHHHHHHHHhCCCcccceeeecccc----------ccCCCCChHHHHhhhh
Q psy7269 77 QYEAWWKSAPQSKITLYQFMAKDNVPFHSIMFPATLVAAGDQYTKVNHIMATGH----------KIGTPAPLFRKIEQAQ 146 (235)
Q Consensus 77 ~~~~~W~~~~~~~~~~v~fiGkDi~~Fhai~wpa~L~~~~~~~~~p~~i~~~G~----------kiGn~~~~~~~i~~~~ 146 (235)
+..++||.| +|+.|+||++||+++|||++++.|. .+|++++.||| |.||++.|.+.|++||
T Consensus 244 ~~~~~~p~d-------i~~~G~D~~~~H~~~~~a~l~~~g~--~~~~~~~~~G~v~~~G~KMSKS~GN~i~~~dli~~~g 314 (497)
T 2csx_A 244 KVEIYWPAD-------LHLVGKDILRFHTVYWPAFLMSLGY--ELPKKVFAHGWWTVEGKKMSKTLGNVVDPYEVVQEYG 314 (497)
T ss_dssp THHHHCSCS-------CEEEEGGGHHHHHTHHHHHHHHHTC--CCCSCEEEECCEESSSSBCCTTTTCCCCHHHHHHHHC
T ss_pred cchhhCCce-------EEEeecchhHhHHHHHHHHHHHcCC--CCCcEEEECcEEEeCCceeCCcCCCCCCHHHHHHHCC
Confidence 112788853 8999999999999999999999984 47899999998 4688889999999999
Q ss_pred hHHHHHHhcCCCccccccCcccccccCCCHhHHHHHH--HHHHHhhhhHhhhhhhhhcccccc
Q psy7269 147 VDEWKLKYGGQQSKESSNNKKETKQAEITFSSVEELE--AAVATQGALLGTVDVIVMSSRTGA 207 (235)
Q Consensus 147 ~d~lR~~f~G~~~~~l~~~~pe~~D~~fs~~~~~~~~--~lv~~~GNlV~R~~~~~~~~~~~~ 207 (235)
+|++|+++ +..++..+|.+|+++.+.+.. ++++.+||+++|+.+++.+...+.
T Consensus 315 ~DalR~~l--------l~~~~~~~d~~fs~~~l~~~~~~~l~~~l~n~~~R~~~~~~~~~~~~ 369 (497)
T 2csx_A 315 LDEVRYFL--------LREVPFGQDGDFSKKAILNRINGELANEIGNLYSRVVNMAHKFLGGE 369 (497)
T ss_dssp HHHHHHHH--------HHSSCTTSCEECCHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHSTTC
T ss_pred cHHHHHHH--------HhcCCcccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 99999844 344567899999999998754 678999999999999886654443
No 9
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=99.94 E-value=1.3e-27 Score=239.14 Aligned_cols=176 Identities=16% Similarity=0.193 Sum_probs=139.9
Q ss_pred ChHHHHHHHHhCCCCCChhH-HHHHHHHHhcCCCCccceeccCCccccCC----C-CC----------------------
Q psy7269 1 IEDKLQSWVSETSDQWSSNA-RVICKAWLKDGLKPRCITRDLKWGIPVPL----P-GF---------------------- 52 (235)
Q Consensus 1 ~~~~L~e~~~~~~~~~p~~~-~~~~~~~l~~gL~Dw~ISR~~~WGIpvP~----~-~~---------------------- 52 (235)
+++++++++++.. +.|+.. .+++.+||+ +|+|||||||+.||+|||+ + +.
T Consensus 411 ~~~~~~~~~~~~~-~~P~~~~~~~~~~~l~-~l~DW~ISRqr~WG~pIP~~~~~~~~~~~vi~~~~~l~~~~~~~~~~~~ 488 (821)
T 1ile_A 411 FKDELIRNNQEIH-WVPPHIKEGRYGEWLK-NLVDWALSRNRYWGTPLPIWVCQACGKEEAIGSFQELKARATKPLPEPF 488 (821)
T ss_dssp GHHHHHHHHHHSE-ESSGGGTTTTTHHHHH-TCCCEECCBCCSSSCBCCEEEESSSSCCEECCSHHHHHHHBSSCCCSSC
T ss_pred HHHHHHHHhcCeE-EECchhhHhHHHHHHh-CCchheecccCCCCCeeeEEEecCCCcEEeeCcHHHHHhhccccccchh
Confidence 4788999998763 348877 468999996 7999999999999999994 1 10
Q ss_pred ----------------------CCCeEEEeccCccchhhcccccc----hhhhhhcCCCCCCCceeEEEeecCCcchhhh
Q psy7269 53 ----------------------ENKVFYVWFDAPIGYMSLTQSYC----GQYEAWWKSAPQSKITLYQFMAKDNVPFHSI 106 (235)
Q Consensus 53 ----------------------~~~viyVWfDa~~~yls~~~~~~----~~~~~~W~~~~~~~~~~v~fiGkDi~~Fhai 106 (235)
+.+|+||||||.+.|++.. +|+ +.+..+||+| +|+.|+||++|
T Consensus 489 ~l~~~~~d~~~~~~~~g~~~~r~~dvld~WfdS~~~~~~~~-~~p~~~~~~f~~~~P~d-------l~~~G~D~~r~--- 557 (821)
T 1ile_A 489 DPHRPYVDQVELACACGGTMRRVPYVIDVWYDSGAMPFASL-HYPFEHEEVFRESFPAD-------FIAEGIDQTRG--- 557 (821)
T ss_dssp CCSHHHHTTCEEECTTSSEEEECSCBCCHHHHHHHHHHHTT-TTTTSCHHHHHHHSSBS-------BEEEEGGGGGT---
T ss_pred hhccccccccccCCCCCCchhhcccccceecccccchHhhc-CCCccchHHHhhcCCcc-------cccchhhhhcc---
Confidence 1368999999999888765 665 2467789964 89999999998
Q ss_pred HHHHHHHHhCC---Ccccceeeecccc-----------ccCCCCChHHHHhhhhhHHHHHHhcCCCccccccCccccccc
Q psy7269 107 MFPATLVAAGD---QYTKVNHIMATGH-----------KIGTPAPLFRKIEQAQVDEWKLKYGGQQSKESSNNKKETKQA 172 (235)
Q Consensus 107 ~wpa~L~~~~~---~~~~p~~i~~~G~-----------kiGn~~~~~~~i~~~~~d~lR~~f~G~~~~~l~~~~pe~~D~ 172 (235)
|++.+++.+. +..+|+++++||+ |+||+++|.+.|++||+|++|+++ +...|.++|.
T Consensus 558 -w~~~~~~~~~~~~~~~pf~~v~~hg~vl~~~G~KMSKS~GNvV~p~dli~~yGaDalR~~l--------l~~~~~~~d~ 628 (821)
T 1ile_A 558 -WFNSLHQLGVMLFGSIAFKNVICHGLILDEKGQKMSKSKGNVVDPWDIIRKFGADALRWYI--------YVSAPPEADR 628 (821)
T ss_dssp -HHHHHHHHHHHHHSSCSBSEEEEECCEECTTSSCCCTTTTCCCCHHHHHTTTCHHHHHHHH--------HHHSCSSSCE
T ss_pred -HHHHHHHHHHHhcCCCCcceEEEEeeEECCCCCCCCccCCCCCCHHHHHHHhCHHHHHHHH--------HhCCCCCCCc
Confidence 5665554321 1235789999997 578999999999999999999844 4455678999
Q ss_pred CCCHhHHHH-HHHHHHHhhhhHhhhhh
Q psy7269 173 EITFSSVEE-LEAAVATQGALLGTVDV 198 (235)
Q Consensus 173 ~fs~~~~~~-~~~lv~~~GNlV~R~~~ 198 (235)
+|+.+.+.+ ..+++++++|+++|+..
T Consensus 629 ~fs~~~l~~~~~~~~~kl~N~~~~~~~ 655 (821)
T 1ile_A 629 RFGPNLVRETVRDYFLTLWNVYSFFVT 655 (821)
T ss_dssp ECCHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999988 46899999999998763
No 10
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=99.93 E-value=8.1e-27 Score=234.27 Aligned_cols=173 Identities=13% Similarity=0.207 Sum_probs=140.0
Q ss_pred ChHHHHHHHHhCCC-CCChhHHHHHHHHHhcCCCCccceeccCCccccCC---C--C-----C-----------------
Q psy7269 1 IEDKLQSWVSETSD-QWSSNARVICKAWLKDGLKPRCITRDLKWGIPVPL---P--G-----F----------------- 52 (235)
Q Consensus 1 ~~~~L~e~~~~~~~-~~p~~~~~~~~~~l~~gL~Dw~ISR~~~WGIpvP~---~--~-----~----------------- 52 (235)
+++++.+++++.+. ++|++.++++.+||+ +|+|||||||++||+|||. + + .
T Consensus 366 ~~~~~l~~v~~~~~~~~P~~~~~~~~~wl~-~l~DW~ISRqr~WG~pIP~w~~~~~~~i~v~~~~~l~~~~~~~~~~g~~ 444 (862)
T 1gax_A 366 LAEEVLKGLRRGDIAFVPERWKKVNMDWLE-NVKDWNISRQLWWGHQIPAWYCEDCQAVNVPRPERYLEDPTSCEACGSP 444 (862)
T ss_dssp HHHHHHHHHHHTCCEESSSHHHHHHHHHHH-TCCCCCCBCCCSSSCCCCCEEETTTCCEECCCGGGTTCCCCSCTTTCCS
T ss_pred HHHHHHHHHHcCCceEcCHHHHHHHHHHHh-cccceeEecccCCCcccCceecCCCCEEEEeccccccccchhhhhcCch
Confidence 36788999976554 469999999999996 6999999999999999996 1 1 1
Q ss_pred ----CCCeEEEeccCccchhhcccccch---hhhhhcCCCCCCCceeEEEeecCCcchhhhHHHHHHHHhCCC---cccc
Q psy7269 53 ----ENKVFYVWFDAPIGYMSLTQSYCG---QYEAWWKSAPQSKITLYQFMAKDNVPFHSIMFPATLVAAGDQ---YTKV 122 (235)
Q Consensus 53 ----~~~viyVWfDa~~~yls~~~~~~~---~~~~~W~~~~~~~~~~v~fiGkDi~~Fhai~wpa~L~~~~~~---~~~p 122 (235)
+.+|+++||||.+.|++.. +|++ +++.+||+| +|+.|+||++| |++.+++.+.. ..++
T Consensus 445 ~~~r~~DvlDtWfdS~~~~~~~~-~~p~~~~~~~~~~P~d-------~~v~G~Dii~~----W~a~~~~~~~~~~g~~Pf 512 (862)
T 1gax_A 445 RLKRDEDVFDTWFSSALWPLSTL-GWPEETEDLKAFYPGD-------VLVTGYDILFL----WVSRMEVSGYHFMGERPF 512 (862)
T ss_dssp CEEECCCCBCHHHHHTSCTTGGG-TTTSCCHHHHHSCSBS-------CEEEEGGGTTT----THHHHHHHHHHHSSSCSB
T ss_pred heecCCcccceeeccCCcchhhc-cCCCchHHHHhhCCce-------EEecCcccccc----HHHHHHHHHHHhcCCCcc
Confidence 1357788889998998875 7774 467889964 89999999998 77776665531 1245
Q ss_pred eeeecccc-----------ccCCCCChHHHHhhhhhHHHHHHhcCCCccccccCcccccccCCCHhHHHHHHHHHHHhhh
Q psy7269 123 NHIMATGH-----------KIGTPAPLFRKIEQAQVDEWKLKYGGQQSKESSNNKKETKQAEITFSSVEELEAAVATQGA 191 (235)
Q Consensus 123 ~~i~~~G~-----------kiGn~~~~~~~i~~~~~d~lR~~f~G~~~~~l~~~~pe~~D~~fs~~~~~~~~~lv~~~GN 191 (235)
+++++||+ |+||+++|.+.|++||+|++|+++ +..++.++|.+|+.+.+.+....++.++|
T Consensus 513 k~v~~hG~vld~~G~KMSKSlGNvIdP~dli~~yGaDalR~~l--------l~~~~~~~D~~fs~~~l~~~~~f~nkl~N 584 (862)
T 1gax_A 513 KTVLLHGLVLDEKGQKMSKSKGNVIDPLEMVERYGADALRFAL--------IYLATGGQDIRLDLRWLEMARNFANKLYN 584 (862)
T ss_dssp SEEEEECCEECTTSCBCCTTTTCCCCHHHHHHHHCHHHHHHHH--------HHHCCTTCCEECCHHHHHHHHHHHHHHHH
T ss_pred cEEEEeeeEEcCCCCCccccCCCCCCHHHHHHHcChHHHHHHH--------HhcCCCCCCCccCHHHHHHHHHHHHHHHH
Confidence 89999997 579999999999999999999844 44456789999999999988789999999
Q ss_pred hHh
Q psy7269 192 LLG 194 (235)
Q Consensus 192 lV~ 194 (235)
+++
T Consensus 585 ~~r 587 (862)
T 1gax_A 585 AAR 587 (862)
T ss_dssp HHH
T ss_pred HHH
Confidence 875
No 11
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=99.92 E-value=7.7e-26 Score=225.77 Aligned_cols=180 Identities=16% Similarity=0.208 Sum_probs=137.2
Q ss_pred ChHHHHHHHHhCCCCCChhHHHHHHHHHhcCCCCccceeccCCccccCCC------CCCCCeEEEeccCccchhhcc---
Q psy7269 1 IEDKLQSWVSETSDQWSSNARVICKAWLKDGLKPRCITRDLKWGIPVPLP------GFENKVFYVWFDAPIGYMSLT--- 71 (235)
Q Consensus 1 ~~~~L~e~~~~~~~~~p~~~~~~~~~~l~~gL~Dw~ISR~~~WGIpvP~~------~~~~~viyVWfDa~~~yls~~--- 71 (235)
+++++.+++++.. .+|++.++++.+||+ +++|||||||+.||+|||.+ ...+.++|||+++.++|++..
T Consensus 474 ~~~~~l~~~~~~~-~~P~~~~~~~~~~l~-~l~Dw~ISRq~~WG~piP~d~~~~~~~~~~~~iYv~~~~~~~~~~~~~~~ 551 (810)
T 1wkb_A 474 WKEKARKALERMK-ILPETRRAQFEAIID-WLDKKACARKIGLGTPLPWDPEWVIESLSDSTIYMAYYTISRHINKLRQE 551 (810)
T ss_dssp HHHHHHHHHHTSE-EESGGGHHHHHHHHH-HCCCEECEESSSBSCEETTEEEEEECTTTSSSSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhhhcccE-EECcchhchHHHHhh-cccCccccccCCCCCcCCcCcceecccCCCCceeeehhhhHHHHHHhHhh
Confidence 3678999997653 579999999999997 79999999999999999953 234678999999887776510
Q ss_pred --------------------------------cccc--------hhhhhhcCCCCCCCceeEEEeecCCcchhhhHHHHH
Q psy7269 72 --------------------------------QSYC--------GQYEAWWKSAPQSKITLYQFMAKDNVPFHSIMFPAT 111 (235)
Q Consensus 72 --------------------------------~~~~--------~~~~~~W~~~~~~~~~~v~fiGkDi~~Fhai~wpa~ 111 (235)
.+++ ++++.|||.| +|+.|+||++||..++.++
T Consensus 552 ~~~~~~~l~~~~~d~~~~~~~~~g~~~~~~~~sg~~~~~~~~~~~~~~~~~p~D-------i~~~G~D~~~~H~~~~~~~ 624 (810)
T 1wkb_A 552 GKLDPEKLTPEFFDYIFLEEFSEDKEKELEKKTGIPAEIIHEMKEEFEYWYPLD-------WRCSGKDLIPNHLTFFIFN 624 (810)
T ss_dssp TCCCGGGCCHHHHHHHHHSCCCHHHHHHHHHHHSCCHHHHHHHHHHHHHHCSCS-------EEEEEGGGTTTHHHHHHHH
T ss_pred cCCCHHHcCccceeeeeccccccCccccchhhhCCCHHHHHhhHHHHHhhCCce-------EEeecccccccHHHHHHHH
Confidence 0111 2344567853 9999999999999988544
Q ss_pred HHHhCCCcccceeeecccc----------ccCCCCChHHHHhhhhhHHHHHHhcCCCccccccCcccccccCCCHhHHHH
Q psy7269 112 LVAAGDQYTKVNHIMATGH----------KIGTPAPLFRKIEQAQVDEWKLKYGGQQSKESSNNKKETKQAEITFSSVEE 181 (235)
Q Consensus 112 L~~~~~~~~~p~~i~~~G~----------kiGn~~~~~~~i~~~~~d~lR~~f~G~~~~~l~~~~pe~~D~~fs~~~~~~ 181 (235)
..+.-....+|+++++||| |+||+++|.+.|++||+|++|+++ +...|.++|.+|+.+.+..
T Consensus 625 ~~~~~~~~~~pk~v~~~G~v~~~G~KMSKS~GNvv~p~dli~~yGaDalR~~l--------l~~~~~~~d~~fs~~~~~~ 696 (810)
T 1wkb_A 625 HVAIFREEHWPKGIAVNGFGTLEGQKMSKSKGNVLNFIDAIEENGADVVRLYI--------MSLAEHDSDFDWRRKEVGK 696 (810)
T ss_dssp HHHHSCGGGSCCEEEEECCEEETTBCCCTTTTCCCBHHHHHHHHCHHHHHHHH--------HHHCCTTCCEEECHHHHHH
T ss_pred HHHHcCccccccEEEEEeEEEeCCeehhhcCCCcCCHHHHHHHcChHHHHHHH--------HhcCCCCCCcccCHHHHHH
Confidence 3332211235799999998 578999999999999999999844 3345678999999998877
Q ss_pred HHHHHHHhhhhHhhhh
Q psy7269 182 LEAAVATQGALLGTVD 197 (235)
Q Consensus 182 ~~~lv~~~GNlV~R~~ 197 (235)
....++.+.|+++++.
T Consensus 697 ~~~~l~rl~n~~~~~~ 712 (810)
T 1wkb_A 697 LRKQIERFYELISQFA 712 (810)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6667777777777654
No 12
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=99.92 E-value=2.6e-25 Score=224.71 Aligned_cols=178 Identities=13% Similarity=0.194 Sum_probs=135.5
Q ss_pred ChHHHHHHHHhCCCCCChhHHHHHHHHHhcCCCCccceeccCCccccCC--CCCCCC------------------eEEEe
Q psy7269 1 IEDKLQSWVSETSDQWSSNARVICKAWLKDGLKPRCITRDLKWGIPVPL--PGFENK------------------VFYVW 60 (235)
Q Consensus 1 ~~~~L~e~~~~~~~~~p~~~~~~~~~~l~~gL~Dw~ISR~~~WGIpvP~--~~~~~~------------------viyVW 60 (235)
+++++++++++. .++|++.++++.+||++ ++||||||||.||+|||+ +. +++ .+|+|
T Consensus 419 lr~~~l~~i~~~-~~~P~~~~~r~~~~l~~-~~DW~ISRqr~WG~PIP~~~~~-~g~~~~~~~~~~~i~~~~~~~g~~~W 495 (917)
T 1ffy_A 419 VRQDILDAIENT-NFKVNWGKTRIYNMVRD-RGEWVISRQRVWGVPLPVFYAE-NGEIIMTKETVNHVADLFAEHGSNIW 495 (917)
T ss_dssp HHHHHHHHHHTS-EESSHHHHHHHHHHHHH-CCCEECEESCSSSCBCCCEECT-TSCEECCHHHHHHHHHHHHHHCTHHH
T ss_pred HHHHHHHHHhcC-cccCHHHHHHHHHHHhc-CccceeeccCCcCcccceeeCC-CCCEecCHHHHHHHHHHhhhcCCccc
Confidence 467888999864 35699999999999975 999999999999999997 31 133 44778
Q ss_pred ccCccchhhcc---------cccch--h----h---------------hhhcCCCCCCCceeEEEeecCCcc--hhhhHH
Q psy7269 61 FDAPIGYMSLT---------QSYCG--Q----Y---------------EAWWKSAPQSKITLYQFMAKDNVP--FHSIMF 108 (235)
Q Consensus 61 fDa~~~yls~~---------~~~~~--~----~---------------~~~W~~~~~~~~~~v~fiGkDi~~--Fhai~w 108 (235)
||+.++|+... ..+.+ | | .-.||+| +|+.|+||++ ||++++
T Consensus 496 ~~~~~~~~~~~~~~~~~~g~~~~~~~~D~lD~WfdSg~~~~~~l~~~~~~~~P~D-------l~~~G~D~~r~wf~~~l~ 568 (917)
T 1ffy_A 496 FEREAKDLLPEGFTHPGSPNGTFTKETDIMDVWFDSGSSHRGVLETRPELSFPAD-------MYLEGSDQYRGWFNSSIT 568 (917)
T ss_dssp HHSCHHHHSSTTCCCSSCTTSCCEECCCEECHHHHHHTHHHHTTTTSTTCCSSBS-------EEEEEGGGGTTHHHHHHH
T ss_pred ccCCHHHhcccccccccCCcccccccCCCcCeecCCCCCHHHHcCCchhcCCCce-------EEEEEecccccHHHHHHH
Confidence 87776666531 01210 1 1 0125643 8999999996 899999
Q ss_pred HHHHHHhCCCcccceeeecccc-----------ccCCCCChHHHHhhhhhHHHHHHhcCCCccccccCcccccccCCCHh
Q psy7269 109 PATLVAAGDQYTKVNHIMATGH-----------KIGTPAPLFRKIEQAQVDEWKLKYGGQQSKESSNNKKETKQAEITFS 177 (235)
Q Consensus 109 pa~L~~~~~~~~~p~~i~~~G~-----------kiGn~~~~~~~i~~~~~d~lR~~f~G~~~~~l~~~~pe~~D~~fs~~ 177 (235)
+++.+. |. .+++++++||| |+||+++|.+.|++||+|++|+.. +. .+.++|.+|+++
T Consensus 569 ~s~~~~-g~--~Pfk~v~~hG~V~d~~G~KMSKSlGNvV~P~dvi~~yGaDalR~~l--------ls-~~~~~D~~fs~~ 636 (917)
T 1ffy_A 569 TSVATR-GV--SPYKFLLSHGFVMDGEGKKMSKSLGNVIVPDQVVKQKGADIARLWV--------SS-TDYLADVRISDE 636 (917)
T ss_dssp HHHHHH-SS--CSBSEEEEECCEECTTSCCCCSSSSCCCCHHHHHHHTCHHHHHHHH--------HT-SCTTSCEECCHH
T ss_pred HHHHhh-CC--CcccceeEeeeEEcCCCcCcccccCCcCChHHHHHhCCHHHHHHHH--------hc-cCCCCCcccCHH
Confidence 998854 42 24688999987 579999999999999999999844 33 567899999999
Q ss_pred HHHHHHHHHHHhhhhHhhhhhhh
Q psy7269 178 SVEELEAAVATQGALLGTVDVIV 200 (235)
Q Consensus 178 ~~~~~~~lv~~~GNlV~R~~~~~ 200 (235)
.+.+..+..+.+.|.++++++.+
T Consensus 637 ~l~~~~~~~~kl~n~~r~~l~nl 659 (917)
T 1ffy_A 637 ILKQTSDDYRKIRNTLRFMLGNI 659 (917)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Confidence 99887778888888888776543
No 13
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Probab=99.90 E-value=8.9e-25 Score=221.88 Aligned_cols=180 Identities=16% Similarity=0.193 Sum_probs=136.7
Q ss_pred hHHHHHHHHhCCCCCChhHHHHHHHHHhcCCCCccceeccCCccccCCCCC------CCCeEEEeccCccchhhcc----
Q psy7269 2 EDKLQSWVSETSDQWSSNARVICKAWLKDGLKPRCITRDLKWGIPVPLPGF------ENKVFYVWFDAPIGYMSLT---- 71 (235)
Q Consensus 2 ~~~L~e~~~~~~~~~p~~~~~~~~~~l~~gL~Dw~ISR~~~WGIpvP~~~~------~~~viyVWfDa~~~yls~~---- 71 (235)
++++++++++.. ++|++.++++.+||+ +++|||||||+.||+|||.+.. .+.++|||+++..+++...
T Consensus 475 k~~~l~~~~~~~-~~P~~~~~~~~~~l~-~l~DW~ISRqr~WG~piP~d~~~~~~~~~ds~iYv~~~~~~~~~~~~~~~~ 552 (967)
T 1wz2_A 475 KEKARKALERMK-ILPETRRAQFEAIID-WLDKKACARKIGLGTPLPWDPEWVIESLSDSTIYMAYYTISRHINKLRQEG 552 (967)
T ss_dssp HHHHHHHHTTSC-EESSTTHHHHHHHHH-SCCEECCCBSSSSSEECTTCTTSEECHHHHTTSTHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhhhccE-eeCccccchHHHhhh-cccCeeeccCCCCCccCCcCcccccccCCCCceEeehhhhhhHHHHHHHhc
Confidence 578889997653 569999999999996 7999999999999999997521 1457899988776555300
Q ss_pred -------------------------------cccc--------hhhhhhcCCCCCCCceeEEEeecCCcchhhhHHHHHH
Q psy7269 72 -------------------------------QSYC--------GQYEAWWKSAPQSKITLYQFMAKDNVPFHSIMFPATL 112 (235)
Q Consensus 72 -------------------------------~~~~--------~~~~~~W~~~~~~~~~~v~fiGkDi~~Fhai~wpa~L 112 (235)
.+++ ++++.|||.| +|+.|+||++||..++.++.
T Consensus 553 g~~~~~l~~~~~d~~~~~~~~~g~~~~~~~~sG~~~~~~~~~~~~~~~w~P~D-------i~~~G~D~i~~H~~~~~~~~ 625 (967)
T 1wz2_A 553 KLDPEKLTPEFFDYIFLEEFSEDKEKELEKKTGIPAEIIHEMKEEFEYWYPLD-------WRCSGKDLIPNHLTFFIFNH 625 (967)
T ss_dssp CCCGGGCCHHHHHHTTTSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHCSCS-------EEEEEGGGTTTHHHHHHHHH
T ss_pred CCChHHcCcccceeeccCccccCccccchhhcCCCHHHHhhhHHHHHhhCCCe-------EEeeeeCcchhHHHHHHHHH
Confidence 0111 2345567854 99999999999998885544
Q ss_pred HHhCCCcccceeeecccc----------ccCCCCChHHHHhhhhhHHHHHHhcCCCccccccCcccccccCCCHhHHHHH
Q psy7269 113 VAAGDQYTKVNHIMATGH----------KIGTPAPLFRKIEQAQVDEWKLKYGGQQSKESSNNKKETKQAEITFSSVEEL 182 (235)
Q Consensus 113 ~~~~~~~~~p~~i~~~G~----------kiGn~~~~~~~i~~~~~d~lR~~f~G~~~~~l~~~~pe~~D~~fs~~~~~~~ 182 (235)
.+.-....+|+++++||| |+||+++|.+.|++||+|++|++. +..++.++|.+|+.+.+.+.
T Consensus 626 ~a~~~~~~~pk~v~~~G~v~~~G~KMSKS~GNvv~p~d~i~~yGaDalR~~l--------l~~~~~~~d~~fs~~~~~~~ 697 (967)
T 1wz2_A 626 VAIFREEHWPKGIAVNGFGTLEGQKMSKSKGNVLNFIDAIEENGADVVRLYI--------MSLAEHDSDFDWRRKEVGKL 697 (967)
T ss_dssp HHHSCSTTSCCCEEEECCEEESSSCCCTTTCCCCBHHHHHHTTCHHHHHHHH--------HHHCCTTCCEEECHHHHHHH
T ss_pred HHHcCcccccceEEEeeEEeeCCEEccccccCCCCHHHHHHHhChHHHHHHH--------HhCCCCCCCcccCHHHHHHH
Confidence 442211135799999998 578999999999999999999844 33456789999999988887
Q ss_pred HHHHHHhhhhHhhhhh
Q psy7269 183 EAAVATQGALLGTVDV 198 (235)
Q Consensus 183 ~~lv~~~GNlV~R~~~ 198 (235)
...++.+.|+++++..
T Consensus 698 ~~~l~rl~n~~~~~~~ 713 (967)
T 1wz2_A 698 RKQIERFYELISQFAE 713 (967)
T ss_dssp HHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHhc
Confidence 7888888888887643
No 14
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=99.76 E-value=7.9e-19 Score=176.78 Aligned_cols=161 Identities=15% Similarity=0.191 Sum_probs=114.6
Q ss_pred hHHHHHHHHHhc----------CCCCccceeccCCccccCC----CC----------------------C----------
Q psy7269 19 NARVICKAWLKD----------GLKPRCITRDLKWGIPVPL----PG----------------------F---------- 52 (235)
Q Consensus 19 ~~~~~~~~~l~~----------gL~Dw~ISR~~~WGIpvP~----~~----------------------~---------- 52 (235)
.+++.+.++|++ .|+||||||||+||+|||+ +. .
T Consensus 396 eA~~~Ii~~L~~~g~~~~~v~~rlrDW~ISRQR~WG~PIPi~~~~~~~~v~v~~~~lpv~lp~~~~~~~~~~~g~~pl~~ 475 (878)
T 2v0c_A 396 EGKRKVIAWLEEKGLGKGRVTYRLRDWLISRQRYWGTPIPMVHCEACGVVPVPEEELPVLLPDLKDVEDIRPKGKSPLEA 475 (878)
T ss_dssp HHHHHHHHHHHHHTSEEEEEEESCCCEECEESCSSSEECCEEEETTTEEEECCGGGCCCCCCCCCCHHHHSCSSSCGGGG
T ss_pred HHHHHHHHHHHHCCCCCCceEEecccchhhcccccCCcccEEEECCCCeEecCHHHccccccchhhhhccccCCCChhhh
Confidence 466777777764 5899999999999999997 10 0
Q ss_pred ------------------CCCeEEEeccCccchhhcccccc---------hhhhhhcCCCCCCCceeEEEeecCCcch--
Q psy7269 53 ------------------ENKVFYVWFDAPIGYMSLTQSYC---------GQYEAWWKSAPQSKITLYQFMAKDNVPF-- 103 (235)
Q Consensus 53 ------------------~~~viyVWfDa~~~yls~~~~~~---------~~~~~~W~~~~~~~~~~v~fiGkDi~~F-- 103 (235)
+.+|++|||||. .|.+.. .++ ++++.|+|.| +++.|+||...
T Consensus 476 ~~~~~~~~cp~cg~~~~retDtmDtwfdSs-w~~~~~-~~p~~~~~~~~~~~~~~~~P~D-------~yi~G~d~~ilhl 546 (878)
T 2v0c_A 476 HPEFYETTCPKCGGPAKRDTDTMDTFFDSS-WYYLRY-TDPHNDRLPFDPEKANAWMPVD-------QYIGGVEHAVLHL 546 (878)
T ss_dssp CHHHHEEECTTTCSEEEECCCEECHHHHHT-SHHHHT-TSTTCSSSSCCHHHHHHHCSBS-------EEECCGGGTTTHH
T ss_pred hHhhcCCcCCCCCCcceecccccccccccc-chhhhc-cCccccccccCHHHHccCCCCe-------EEEechHHHHHHH
Confidence 126889999996 554422 222 2345567854 89999999755
Q ss_pred -hhhHHHHHHHHhCC-Cc-ccceeeecccc--------------------------------------------------
Q psy7269 104 -HSIMFPATLVAAGD-QY-TKVNHIMATGH-------------------------------------------------- 130 (235)
Q Consensus 104 -hai~wpa~L~~~~~-~~-~~p~~i~~~G~-------------------------------------------------- 130 (235)
|+.+|..+|...|+ .. .+++++++||+
T Consensus 547 ~y~r~~~~~l~~~g~~~~~~Pfk~l~~~G~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (878)
T 2v0c_A 547 LYSRFFTKFLHDLGMVKVEEPFQGLFTQGMVLAWTDFGPVEVEGSVVRLPEPTRIRLEIPESALSLEDVRKMGAELRPHE 626 (878)
T ss_dssp HHHHHHHHHHHHTTSCSCSCSBSBEECCCCEEEEEEEEEEEEETTEEECCHHHHHHHTCSCSEEEHHHHHHTTCEEEECT
T ss_pred HHHHHHHHHHHHhhcccCCCchHhheecceEeccceeccccccccceeccccccccccccCchhhhhccccccceeeccC
Confidence 55568888888773 21 23366655543
Q ss_pred --------------ccCCCCChHHHHhhhhhHHHHHHhcCCCccccccCcccccccCCCHhHHHHHHHHHHHhhhhHhhh
Q psy7269 131 --------------KIGTPAPLFRKIEQAQVDEWKLKYGGQQSKESSNNKKETKQAEITFSSVEELEAAVATQGALLGTV 196 (235)
Q Consensus 131 --------------kiGn~~~~~~~i~~~~~d~lR~~f~G~~~~~l~~~~pe~~D~~fs~~~~~~~~~lv~~~GNlV~R~ 196 (235)
|+||+++|.+.|++||+|++|+++ +..+|.++|.+|+.+.+......++.+-|+++..
T Consensus 627 ~G~~~~~~~~KMSKSkGNvVdP~diI~~yGADalRl~l--------l~~~~~~~D~~fs~~~v~~~~~~l~Rl~n~~~~~ 698 (878)
T 2v0c_A 627 DGTLHLWKPAVMSKSKGNGVMVGPFVKEQGADIARITI--------LFAAPPENEMVWTEEGVQGAWRFLNRIYRRVAED 698 (878)
T ss_dssp TSSEEEEEEEECSGGGTCCCBHHHHHHHSCHHHHHHHH--------HHHSCTTSCEEECHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCchhhhHHHhhccCCCcccHHHHHHHcCccHHHHHH--------hccCCCCCCceeCHHHHHHHHHHHHHHHHHHHHH
Confidence 357999999999999999999844 4445678999999999877666666666655543
No 15
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=99.75 E-value=3.2e-18 Score=172.18 Aligned_cols=162 Identities=16% Similarity=0.155 Sum_probs=118.9
Q ss_pred hHHHHHHHHHhc----------CCCCccceeccCCccccCC----C-C--------------------------------
Q psy7269 19 NARVICKAWLKD----------GLKPRCITRDLKWGIPVPL----P-G-------------------------------- 51 (235)
Q Consensus 19 ~~~~~~~~~l~~----------gL~Dw~ISR~~~WGIpvP~----~-~-------------------------------- 51 (235)
.+++.+.++|++ .|+||||||||+||+|||+ + +
T Consensus 414 eA~~~ii~~L~~~g~~~~~v~yrlrDW~iSRQRyWG~PIPi~~c~~cg~v~v~~~~Lpv~lp~~~~~~~~g~pl~~~~~w 493 (880)
T 4arc_A 414 AAFNAIADKLTAMGVGERKVNYRLRDWGVSRQRYWGAPIPMVTLEDGTVMPTPDDQLPVILPEDVVMDGITSPIKADPEW 493 (880)
T ss_dssp HHHHHHHHHHHHTTSEEEEEEESCCCEECEESCSSSCBCCEEEETTSCEEECCGGGCSCCCCSSCCCCSSSCHHHHSTTT
T ss_pred HHHHHHHHHHHHcCCcceeEEEEcccceeeeeeccCCcceEEEECCCCeEeCChHHCccccchhcccCCCCCchHhCccc
Confidence 355666666654 3899999999999999996 1 1
Q ss_pred -----------CCCCeEEEeccCccchhhcccccc---------hhhhhhcCCCCCCCceeEEEeecCCcchh---hhHH
Q psy7269 52 -----------FENKVFYVWFDAPIGYMSLTQSYC---------GQYEAWWKSAPQSKITLYQFMAKDNVPFH---SIMF 108 (235)
Q Consensus 52 -----------~~~~viyVWfDa~~~yls~~~~~~---------~~~~~~W~~~~~~~~~~v~fiGkDi~~Fh---ai~w 108 (235)
-+.+|+++||||. .|++.. .++ ++...|+|.| +++-|.|+.-.| +.+|
T Consensus 494 ~~~~cpg~~~~retDtmDtw~dSs-wy~~r~-~~p~~~~~~~~~~~~~~~~PvD-------~yigG~EHailHllyaRf~ 564 (880)
T 4arc_A 494 AKTTVNGMPALRETDTFDTFMESS-WYYARY-TCPQYKEGMLDSEAANYWLPVD-------IYIGGIEHAIMHLLYFRFF 564 (880)
T ss_dssp TEEESSSSEEEECCCEECTTTGGG-THHHHT-TSTTCCSSSCCHHHHHHHCSEE-------EEECCGGGTTTHHHHHHHH
T ss_pred eeeccCCCcceeCCCcCCCcccCc-HHHHhh-cCCCccccccChHHHhccCCce-------EeecchhhHHHHHHHHHHH
Confidence 0236799999996 565432 233 2344566743 899999987655 6668
Q ss_pred HHHHHHhCC-Ccc-cceeeecccc--------------------------------------------------c----c
Q psy7269 109 PATLVAAGD-QYT-KVNHIMATGH--------------------------------------------------K----I 132 (235)
Q Consensus 109 pa~L~~~~~-~~~-~p~~i~~~G~--------------------------------------------------k----i 132 (235)
..+|...|. +.. +++++++||+ | +
T Consensus 565 ~~~L~~~g~~~~~ePFk~ll~qGmVl~~~~~~~d~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~G~~v~~~~~eKMSKSk 644 (880)
T 4arc_A 565 HKLMRDAGMVNSDEPAKQLLCQGMVLADAFYYVGENGERNWVSPVDAIVERDEKGRIVKAKDAAGHELVYTGMSKMSKSK 644 (880)
T ss_dssp HHHHHHTTSCCCSCSEEEEECCCCEEEEEEEEECTTSCEEEECSTTCEEEECTTCCEEEEECTTCCBCEEEEEEECCTTT
T ss_pred HHHHHHhhcccCCCChHHeEEeceEeecceeccccCCcccccCHHHhccccccccccccccccCCccccccccccccCcC
Confidence 888988875 212 3477777763 3 5
Q ss_pred CCCCChHHHHhhhhhHHHHHHhcCCCccccccCcccccccCCCHhHHHHHHHHHHHhhhhHhhhh
Q psy7269 133 GTPAPLFRKIEQAQVDEWKLKYGGQQSKESSNNKKETKQAEITFSSVEELEAAVATQGALLGTVD 197 (235)
Q Consensus 133 Gn~~~~~~~i~~~~~d~lR~~f~G~~~~~l~~~~pe~~D~~fs~~~~~~~~~lv~~~GNlV~R~~ 197 (235)
||+++|.+.|++||+|++|+++ +..+|..+|.+|+.+.+......++.+-|+++.+.
T Consensus 645 GNvVdP~diIekYGADalRl~l--------l~~~~~~~dl~~s~~~ie~a~rfl~rlwn~~~~~~ 701 (880)
T 4arc_A 645 NNGIDPQVMVERYGADTVRLFM--------MFASPADMTLEWQESGVEGANRFLKRVWKLVYEHT 701 (880)
T ss_dssp TCCCCHHHHHHHHCHHHHHHHH--------HHSSCTTSCEECCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHcCchHHHHHH--------HhcCCCCCCcccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 8889999999999999999844 44556779999999999887778888888887654
No 16
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}
Probab=99.52 E-value=2.2e-14 Score=133.37 Aligned_cols=129 Identities=13% Similarity=0.046 Sum_probs=96.2
Q ss_pred CCccccCCCCCCCCeEEEeccCccchhhcccccch----hhhhhcCCCCCCCceeEEEeecCCcchhhhHHHHHHHHh-C
Q psy7269 42 KWGIPVPLPGFENKVFYVWFDAPIGYMSLTQSYCG----QYEAWWKSAPQSKITLYQFMAKDNVPFHSIMFPATLVAA-G 116 (235)
Q Consensus 42 ~WGIpvP~~~~~~~viyVWfDa~~~yls~~~~~~~----~~~~~W~~~~~~~~~~v~fiGkDi~~Fhai~wpa~L~~~-~ 116 (235)
.||++.|.+ + .| ||+.|+- ..+|.- -..++|.. .-.+|+.|+||++||.++|||++.+. |
T Consensus 207 lWk~~~pg~--~-----~W-da~~g~g--~pgWhiec~a~~~~~~g~-----~~di~~~G~D~~~~H~~~~~a~~~a~~g 271 (414)
T 3c8z_A 207 LWRAERPGE--P-----SW-PSPFGRG--RPGWHVECSAIALTRIGT-----GLDIQGGGSDLIFPHHEYSAAHAESVTG 271 (414)
T ss_dssp EEEECCTTS--C-----CB-CCTTCSE--EECHHHHHHHHHHHHTCS-----CEEEEEEEGGGTTTHHHHHHHHHHHHHC
T ss_pred hcCCCCCCC--C-----CC-CCCCCCC--CCCccchhHHHHHHhcCC-----CceEEEeccccccHHHHHHHHHHHHhcC
Confidence 499999854 2 38 8887652 123321 13567731 12389999999999999999999997 6
Q ss_pred CCcccceeeecc-cc----------ccCCCCChHHHHhh-hhhHHHHHHhcCCCccccccCcccccccCCCHhHHHHHHH
Q psy7269 117 DQYTKVNHIMAT-GH----------KIGTPAPLFRKIEQ-AQVDEWKLKYGGQQSKESSNNKKETKQAEITFSSVEELEA 184 (235)
Q Consensus 117 ~~~~~p~~i~~~-G~----------kiGn~~~~~~~i~~-~~~d~lR~~f~G~~~~~l~~~~pe~~D~~fs~~~~~~~~~ 184 (235)
. .+|.++++| || |.||++.|.+.+++ +++|++|+++ +. .+..+|.+|+++.+.+...
T Consensus 272 ~--~~~~~~~~h~g~v~~~G~KMSKS~GN~v~~~~ll~~g~g~D~lR~~l--------l~-~~~~~d~~fs~~~l~~~~~ 340 (414)
T 3c8z_A 272 E--RRFARHYVHTGMIGWDGHKMSKSRGNLVLVSQLRAQGVDPSAIRLGL--------FS-GHYREDRFWSNEVLDEANA 340 (414)
T ss_dssp C--SCSEEEEEEECCBC-------------CBHHHHHHTTCCHHHHHHHH--------HT-SCTTSCBCCCHHHHHHHHH
T ss_pred C--CCcCeEEEEcCEEecCCeEcccccCCcCCHHHHhhccCCcchheeEE--------Ee-cCcCCCCCcCHHHHHHHHH
Confidence 3 356778888 66 56888899999999 9999999854 33 5678999999999999888
Q ss_pred HHHHhhhhHhhh
Q psy7269 185 AVATQGALLGTV 196 (235)
Q Consensus 185 lv~~~GNlV~R~ 196 (235)
.+++++|+++|+
T Consensus 341 ~l~~l~n~~~~~ 352 (414)
T 3c8z_A 341 RLARWRSATALP 352 (414)
T ss_dssp HHHHHHHHHTSS
T ss_pred HHHHHHHHHHhc
Confidence 889999999886
No 17
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B
Probab=99.31 E-value=2.6e-12 Score=121.11 Aligned_cols=94 Identities=15% Similarity=0.001 Sum_probs=78.1
Q ss_pred eEEEeecCCcchhhhHHHHHHHHh-CCCcccceeeecccc----------ccCCCCChHHHHhhhhhHHHHHHhcCCCcc
Q psy7269 92 LYQFMAKDNVPFHSIMFPATLVAA-GDQYTKVNHIMATGH----------KIGTPAPLFRKIEQAQVDEWKLKYGGQQSK 160 (235)
Q Consensus 92 ~v~fiGkDi~~Fhai~wpa~L~~~-~~~~~~p~~i~~~G~----------kiGn~~~~~~~i~~~~~d~lR~~f~G~~~~ 160 (235)
.+|+.|+|+++||.++|||++.+. |.+ +|+.++.||| |.||++.+.+.++++++|++|+++
T Consensus 222 dih~gG~Dl~fpH~~~~~aq~~a~~g~~--~~~~~~h~g~v~~~G~KMSKS~GN~v~~~dll~~~g~dalR~~l------ 293 (461)
T 1li5_A 222 DIHGGGSDLMFPHHENEIAQSTCAHDGQ--YVNYWMHSGMVMVDREKMSKSLGNFFTVRDVLKYYDAETVRYFL------ 293 (461)
T ss_dssp EEEECBGGGTTTHHHHHHHHHHHHSSSC--CEEEECCBCCEEETTBCCCGGGTCCCBHHHHHTTSCHHHHHHHH------
T ss_pred eEEeccCccCchHHHHHHHHHHHhcCCC--CCcEEEEeeEEEECCeEccccCCCccChhHHhhhCCHHHHHHHH------
Confidence 499999999999999999999987 643 4555555576 578999999999999999999854
Q ss_pred ccccCcccccccCCCHhHHHHHHHHHHHhhhhHhhh
Q psy7269 161 ESSNNKKETKQAEITFSSVEELEAAVATQGALLGTV 196 (235)
Q Consensus 161 ~l~~~~pe~~D~~fs~~~~~~~~~lv~~~GNlV~R~ 196 (235)
+. .+..+|.+|+++.+.+.....+.+.|+++++
T Consensus 294 --l~-~~~~~~~~fs~~~l~~~~~~l~rl~n~~~~~ 326 (461)
T 1li5_A 294 --MS-GHYRSQLNYSEENLKQARAALERLYTALRGT 326 (461)
T ss_dssp --HS-SCTTSCEEECHHHHHHHHHHHHHHHHHHTTC
T ss_pred --Hc-CCcCCCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 33 4677999999999998777778888888775
No 18
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Probab=98.90 E-value=2.6e-09 Score=101.51 Aligned_cols=106 Identities=9% Similarity=0.078 Sum_probs=81.5
Q ss_pred hhhhcCCCCCCCceeEEEeecCCcchhhhHHHHHHHHhCCCcccceeeecc-cc----------ccCCCCChHHHHhh-h
Q psy7269 78 YEAWWKSAPQSKITLYQFMAKDNVPFHSIMFPATLVAAGDQYTKVNHIMAT-GH----------KIGTPAPLFRKIEQ-A 145 (235)
Q Consensus 78 ~~~~W~~~~~~~~~~v~fiGkDi~~Fhai~wpa~L~~~~~~~~~p~~i~~~-G~----------kiGn~~~~~~~i~~-~ 145 (235)
..++|+. .-+ +|..|+|++++|..+|+|+..+... +++.++.+| || |+||++.+.+.+++ |
T Consensus 246 ~~~~lg~--~~D---IH~gG~DLifpHheneiAqs~a~~g--~~~~~~w~H~g~v~~~G~KMSKSlGN~it~~dll~~gy 318 (501)
T 3sp1_A 246 NLEYFKD--ALD---IHLGGVDHIGVHHINEIAIAECFLN--KKWCDVFVHGEFLIMDYNKMSKSRGNFITVKDLEDQNF 318 (501)
T ss_dssp HHHHTTT--CCC---EEEEEGGGTTTHHHHHHHHHHHHHT--SCCCSEEEEECCEECC----------CCCHHHHHHTTC
T ss_pred HHHHcCC--Cce---EEeeccccccchHHHHHHHHHHccC--CCCCeEEEEeeeEeeCCeEccccCCCcCCHHHHHhcCC
Confidence 3678873 122 9999999999999999999998753 256777777 66 57888999999999 9
Q ss_pred hhHHHHHHhcCCCccccccCcccccccCCCHhHHHHHHH----HHHHhhhhHhhhhhh
Q psy7269 146 QVDEWKLKYGGQQSKESSNNKKETKQAEITFSSVEELEA----AVATQGALLGTVDVI 199 (235)
Q Consensus 146 ~~d~lR~~f~G~~~~~l~~~~pe~~D~~fs~~~~~~~~~----lv~~~GNlV~R~~~~ 199 (235)
++|.+|+.+ +.. +..+|.+|+.+.+.+... +.+.+.|.++|+...
T Consensus 319 g~d~lR~~l--------ls~-~yr~~l~fs~~~l~~a~~~~~~ll~rl~~~~~~~~~~ 367 (501)
T 3sp1_A 319 SPLDFRYLC--------LTS-HYRNQLKFSLDNLQASKIARENLINKLSYFYESLDPV 367 (501)
T ss_dssp CHHHHHHHH--------HTS-CTTSCEECCHHHHHHHHHHHHHHHHHHHHHHHTCCHH
T ss_pred CHHHHHHHH--------Hhc-cCCCCCccCHHHHHHHHHhhHHHHHHHHHHHHHHHhh
Confidence 999999855 222 567899999999987554 499999999987644
No 19
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1
Probab=97.96 E-value=5.1e-06 Score=80.33 Aligned_cols=125 Identities=9% Similarity=-0.008 Sum_probs=76.8
Q ss_pred CCccccCCCCCCCCeEEEeccCccchhhcccccchhhhhhcCCCCCCCceeEEEeecCCcchhhhHHHHHHHHhCCCccc
Q psy7269 42 KWGIPVPLPGFENKVFYVWFDAPIGYMSLTQSYCGQYEAWWKSAPQSKITLYQFMAKDNVPFHSIMFPATLVAAGDQYTK 121 (235)
Q Consensus 42 ~WGIpvP~~~~~~~viyVWfDa~~~yls~~~~~~~~~~~~W~~~~~~~~~~v~fiGkDi~~Fhai~wpa~L~~~~~~~~~ 121 (235)
.||+|+|.. ..+++||||-+...+|+.....+.+....-|++ . ++.|+ + .|
T Consensus 336 ~~g~~~~~~-~~~~~iyV~g~~h~~~~~~~~~~~~alG~~~~~---~--~~~H~-~-----------------~g----- 386 (592)
T 1iq0_A 336 APEGEAYTP-KAEETINVVDVRQSHPQALVRAALALAGYPALA---E--KAHHL-A-----------------YE----- 386 (592)
T ss_dssp EEEEEECCC-CCSEEEEEEESSSCCCHHHHHHHHHHTTCHHHH---T--TEEEE-E-----------------EC-----
T ss_pred ccCcccCCC-CCCEEEEEEeccHHHHHHHHHHHHHHcCCCCCC---C--cEEEE-E-----------------ee-----
Confidence 589999972 378999999877666665432221111000100 0 11222 0 01
Q ss_pred ceeeecccc----ccCCCCChHHHHhh-------------------------hhhHHHHHHhcCCCccccccCccccccc
Q psy7269 122 VNHIMATGH----KIGTPAPLFRKIEQ-------------------------AQVDEWKLKYGGQQSKESSNNKKETKQA 172 (235)
Q Consensus 122 p~~i~~~G~----kiGn~~~~~~~i~~-------------------------~~~d~lR~~f~G~~~~~l~~~~pe~~D~ 172 (235)
.|...|- +.||++.+.+.+++ +|+|.+|+++ ++..+ .+|.
T Consensus 387 --~v~~~g~KMSKr~Gn~v~l~dll~~~~~~~~~~~~~~~~~~~~~e~~a~~vg~~aiRyf~--------L~~~~-~~~~ 455 (592)
T 1iq0_A 387 --TVLLEGRQMSGRKGLAVSVDEVLEEATRRARAIVEEKNPDHPDKEEAARMVALGAIRFSM--------VKTEP-KKQI 455 (592)
T ss_dssp --CEEETTBCSCC----CCBHHHHHHHHHHHHHHHHHHHCTTCSCHHHHHHHHHHHHHHHHH--------HHSCT-TSCE
T ss_pred --EEEcCCCcccCCCCCccCHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHhhcHHHHHHHH--------HhcCC-CCCC
Confidence 1222343 46788889999998 9999999844 33333 5899
Q ss_pred CCCHhHHHHHH-HHHHHhhhhHhhhhhhhhccccc
Q psy7269 173 EITFSSVEELE-AAVATQGALLGTVDVIVMSSRTG 206 (235)
Q Consensus 173 ~fs~~~~~~~~-~lv~~~GNlV~R~~~~~~~~~~~ 206 (235)
+|+++.+.+.. +...-+.+...|+.+++.++..+
T Consensus 456 ~Fd~d~~~~~~~~~~~ylqya~aR~~sil~k~~~~ 490 (592)
T 1iq0_A 456 DFRYQEALSFEGDTGPYVQYAHARAHSILRKAGEW 490 (592)
T ss_dssp EECHHHHHCSSSSSHHHHHHHHHHHHHHHHHHCCC
T ss_pred eecHHHHHHHhccchHHHHHHHHHHHHHHHhhccc
Confidence 99999998865 45666778888999999887543
No 20
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A
Probab=97.90 E-value=5.5e-06 Score=80.70 Aligned_cols=66 Identities=9% Similarity=0.094 Sum_probs=52.9
Q ss_pred ccC--CCCChHHHHhh---------------------------hhhHHHHHHhcCCCccccccCcccccccCCCHhHHHH
Q psy7269 131 KIG--TPAPLFRKIEQ---------------------------AQVDEWKLKYGGQQSKESSNNKKETKQAEITFSSVEE 181 (235)
Q Consensus 131 kiG--n~~~~~~~i~~---------------------------~~~d~lR~~f~G~~~~~l~~~~pe~~D~~fs~~~~~~ 181 (235)
+.| |++.+.+.|++ +|.|++||.+ .+..+ .+|.+|+++.+.+
T Consensus 428 r~G~~n~v~l~dLl~e~~~~a~~~~~~~~~~~~~~~~~~~a~~vg~~AvRy~~--------L~~~~-~~~~~Fd~d~~~~ 498 (629)
T 2zue_A 428 RKGTWVGFTVDEVIQEAVKRARELIEEKNPALSDEEKAEVAEKVGIGAIRYNL--------IKYSP-DKKIIFRWEDVLN 498 (629)
T ss_dssp TTTTTTTCBHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHH--------HSSCT-TSCEECCHHHHSC
T ss_pred CCCCCCeeeHHHHHHHHHHHHHHHHHhcCcccchhhHHHHHHhcChhHhhHHH--------HhcCC-CCCCeecHHHHHH
Confidence 468 88889999998 9999999854 33333 5899999999987
Q ss_pred HH-HHHHHhhhhHhhhhhhhhcccc
Q psy7269 182 LE-AAVATQGALLGTVDVIVMSSRT 205 (235)
Q Consensus 182 ~~-~lv~~~GNlV~R~~~~~~~~~~ 205 (235)
.. +.+.-+++...|+.+++.+...
T Consensus 499 ~~~~t~~ylqYa~aRi~Silrka~~ 523 (629)
T 2zue_A 499 FEGESAPYIQYAHARCSSILRKAEE 523 (629)
T ss_dssp CSSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCchHHHHHHHHHHHHHHHhhhc
Confidence 65 6677788999999999977543
No 21
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii}
Probab=97.64 E-value=9.2e-05 Score=69.68 Aligned_cols=95 Identities=11% Similarity=-0.036 Sum_probs=71.0
Q ss_pred eEEEeecCCcchhhhHHHHHHHHhCCCcccceeeecc-cc----------ccCCCCChHHHHhhhhhHHHHHHhcCCCcc
Q psy7269 92 LYQFMAKDNVPFHSIMFPATLVAAGDQYTKVNHIMAT-GH----------KIGTPAPLFRKIEQAQVDEWKLKYGGQQSK 160 (235)
Q Consensus 92 ~v~fiGkDi~~Fhai~wpa~L~~~~~~~~~p~~i~~~-G~----------kiGn~~~~~~~i~~~~~d~lR~~f~G~~~~ 160 (235)
.+|.-|.|++++|--...|+..+... . ++.++.+| |+ |+||++.+.+.+++|++|++|+.+
T Consensus 225 dih~gG~Dl~FpHheneiaqs~a~~g-~-p~~~~w~H~g~v~~~G~KMSKSlGN~i~~~dll~~~g~dalR~~l------ 296 (462)
T 3tqo_A 225 DIHGGGLDLKFPHHENEIAQSEAGEE-K-PFVKLWMHAGLLEINKEKMSKSLGNIISIREALKESDVEVLRYFL------ 296 (462)
T ss_dssp EEEEEEGGGTTTHHHHHHHHHHHHHS-S-CCEEEEEEECCEEETTEECCTTTTCCCBHHHHHHHSCHHHHHHHH------
T ss_pred EEEccccccccHHHHhHHHHHHHHcC-C-CcceEEEEccEEecCCcCccccCCCcccHHHHHhhcChHHhhhhh------
Confidence 38999999999998777777765432 1 34556555 33 578888899999999999999855
Q ss_pred ccccCcccccccCCCHhHHHHHHHHHHHhhhhHhhhh
Q psy7269 161 ESSNNKKETKQAEITFSSVEELEAAVATQGALLGTVD 197 (235)
Q Consensus 161 ~l~~~~pe~~D~~fs~~~~~~~~~lv~~~GNlV~R~~ 197 (235)
+.. +..++.+|+.+.+.+-...++.+-|.++++.
T Consensus 297 --ls~-~yr~~l~fs~~~l~~a~~~l~rl~~~~~~~~ 330 (462)
T 3tqo_A 297 --LSG-HYRNPLSYSKENLENGRLALERFYLALRGLP 330 (462)
T ss_dssp --HHS-CTTSCEEECHHHHHHHHHHHHHHHHHHTTCC
T ss_pred --ccC-CCCCCcCcCHHHHHHHHHHHHHHHHHHHHhh
Confidence 222 3467889999999887777777777777653
No 22
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}
Probab=97.11 E-value=0.00054 Score=64.43 Aligned_cols=103 Identities=12% Similarity=0.154 Sum_probs=66.7
Q ss_pred eeEEEeecCCcchhhhHHHHHHHHhCCCcccce-eeec--------ccc------ccCCCCChHHHHhhhhhHHHHHHhc
Q psy7269 91 TLYQFMAKDNVPFHSIMFPATLVAAGDQYTKVN-HIMA--------TGH------KIGTPAPLFRKIEQAQVDEWKLKYG 155 (235)
Q Consensus 91 ~~v~fiGkDi~~Fhai~wpa~L~~~~~~~~~p~-~i~~--------~G~------kiGn~~~~~~~i~~~~~d~lR~~f~ 155 (235)
+++++.|.||.-.... ..+++.+.|.+ +++ .++. .|. +.||++.|.+.++++|+|.+|+.+
T Consensus 237 ~~Iyv~G~dq~~~f~~-l~~~l~~lG~~--~~~~~h~~~g~V~l~~dG~~~KMSKr~Gn~v~l~dll~~~g~dalRy~~- 312 (464)
T 3fnr_A 237 KCINIWGADHHGYIPR-MKAAMEFLGFD--SNNLEIILAQMVSLLKDGEPYKMSKRAGNFILMSDVVDEIGSDALRYIF- 312 (464)
T ss_dssp EEEEEEEGGGGGGHHH-HHHHHHTTTCC--GGGEEEEEECCEEEEETTEECCC---CCSSCBHHHHHHHHCHHHHHHHT-
T ss_pred eEEEEecCcHHHHHHH-HHHHHHHcCCC--ccceEEEEeeeEEecCCCcccCCcCcCCCCCCHHHHHhhccHHHHHHHH-
Confidence 6799999999853332 33666667743 333 2333 342 368889999999999999999844
Q ss_pred CCCccccccCcccccccCCCHhHHHHHHH--HHHHhhhhHhhhhhhhhcccc
Q psy7269 156 GQQSKESSNNKKETKQAEITFSSVEELEA--AVATQGALLGTVDVIVMSSRT 205 (235)
Q Consensus 156 G~~~~~l~~~~pe~~D~~fs~~~~~~~~~--lv~~~GNlV~R~~~~~~~~~~ 205 (235)
++.. ..+|.+|+++.+.+... .+--+.+..+|+.+++.+...
T Consensus 313 -------l~~~-~~~d~~Fd~~~~~~~~n~npv~YlqYa~aRi~silrk~~~ 356 (464)
T 3fnr_A 313 -------LSKK-CDTHLEFDISDLQKEDSSNPVYYINYAHARIHQVFAKAGK 356 (464)
T ss_dssp -------TSSC-TTSCEEEEGGGGGCCSTTSHHHHHHHHHHHHHHHHHHTTC
T ss_pred -------HhcC-CCCCCccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhc
Confidence 2222 35788999998866421 110112357899999877654
No 23
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1
Probab=96.89 E-value=0.00059 Score=64.79 Aligned_cols=88 Identities=13% Similarity=0.069 Sum_probs=56.0
Q ss_pred EEEeecCCcchh----hhHHHHHHHHhCCCcccce-----eeecc--ccc----cCCCCChHHHHhhhhhHHHHHHhcCC
Q psy7269 93 YQFMAKDNVPFH----SIMFPATLVAAGDQYTKVN-----HIMAT--GHK----IGTPAPLFRKIEQAQVDEWKLKYGGQ 157 (235)
Q Consensus 93 v~fiGkDi~~Fh----ai~wpa~L~~~~~~~~~p~-----~i~~~--G~k----iGn~~~~~~~i~~~~~d~lR~~f~G~ 157 (235)
++++|+|++.+| ...++++ .+.|. .+|. .|... |.| .||++.+.+.++.|++|++|+++
T Consensus 233 vd~~G~Dh~~~h~s~~~~~~i~~-~alG~--~~p~~~h~~~i~~~g~g~KmSKs~Gn~i~~~~~~~~~~pdalR~~l--- 306 (523)
T 1irx_A 233 FEPAGKDHLVAGSSYDTGKEIIK-EVYGK--EAPLSLMYEFVGIKGQKGKMSGSKGNVILLSDLYEVLEPGLVRFIY--- 306 (523)
T ss_dssp BCCEEHHHHSTTSHHHHHHHHHH-HHHCC--CCCBCCEECCEEESCC---------CCCCHHHHHTTSCHHHHHHHH---
T ss_pred CcCCCcCccCCCcchhhHHHHHH-HHhCC--CCCeEEEEEEEEeCCCCCCCCCcCCCCCCHHHHHHHcCHHHHHHHH---
Confidence 678999999999 3556663 56664 2342 12233 443 57777888999999999999855
Q ss_pred CccccccCcccccccCCCHh-HHHHHHHHHHHhhhh
Q psy7269 158 QSKESSNNKKETKQAEITFS-SVEELEAAVATQGAL 192 (235)
Q Consensus 158 ~~~~l~~~~pe~~D~~fs~~-~~~~~~~lv~~~GNl 192 (235)
+...+ .+|.+|+++ .+.+..+..+.+.|.
T Consensus 307 -----~~~~~-~~~~~fs~~~~l~~~~~~~~~~~~~ 336 (523)
T 1irx_A 307 -----ARHRP-NKEIKIDLGLGILNLYDEFEKVERI 336 (523)
T ss_dssp -----HSSCT-TSCEEECCSTTHHHHHHHHHHHHHH
T ss_pred -----HhcCC-CCCceeCcchhHHHHHHHHHHHHHH
Confidence 23333 567889988 777765444444333
No 24
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Probab=66.73 E-value=7.6 Score=37.35 Aligned_cols=101 Identities=12% Similarity=0.082 Sum_probs=62.3
Q ss_pred eeEEEeecCCcchhhhHHHHHHHHhCCCcccceee------ecccc--ccCCCCChHHHHhhhhhH--------------
Q psy7269 91 TLYQFMAKDNVPFHSIMFPATLVAAGDQYTKVNHI------MATGH--KIGTPAPLFRKIEQAQVD-------------- 148 (235)
Q Consensus 91 ~~v~fiGkDi~~Fhai~wpa~L~~~~~~~~~p~~i------~~~G~--kiGn~~~~~~~i~~~~~d-------------- 148 (235)
+++++.|.|+.-...-+ .+.+.+.|.+ .++.+ .+.|+ +.||++.+.+.+++.+.+
T Consensus 366 ~~IyV~g~~q~~~f~q~-~~~~~~lG~~--~~~~~~Hv~fg~v~kMSkR~G~~v~L~dLlde~~~~a~~~~~~~~~~~~~ 442 (607)
T 1f7u_A 366 KMIYVIASQQDLHAAQF-FEILKQMGFE--WAKDLQHVNFGMVQGMSTRKGTVVFLDNILEETKEKMHEVMKKNENKYAQ 442 (607)
T ss_dssp EEEEECCGGGHHHHHHH-HHHHHHTTCG--GGGGEEEECCCCEESCCGGGTCCCBHHHHHHHHHHHHHHHHHTCHHHHTT
T ss_pred cEEEEEcChHhhHHHHH-HHHHHHcCCC--cCcEEEEecccccccccCCCCCcccHHHHHHHHHHHHHHHHHhCcccccc
Confidence 56899999996432322 3666667753 22221 22233 479999999999887552
Q ss_pred --------------HHHHHhcCCCccccccCcccccccCCCHhHHHHHH-HHHHHhhhhHhhhhhhhhcc
Q psy7269 149 --------------EWKLKYGGQQSKESSNNKKETKQAEITFSSVEELE-AAVATQGALLGTVDVIVMSS 203 (235)
Q Consensus 149 --------------~lR~~f~G~~~~~l~~~~pe~~D~~fs~~~~~~~~-~lv~~~GNlV~R~~~~~~~~ 203 (235)
.+|+.. .+ ....++.+|+++.+.+.. +...-+-....|+.+++.+.
T Consensus 443 ~~e~~~~a~~vgi~avry~~--------Ls-~~~~s~~~Fd~d~~~~~~g~t~pylqYa~aRi~SIlrka 503 (607)
T 1f7u_A 443 IEHPEEVADLVGISAVMIQD--------MQ-GKRINNYEFKWERMLSFEGDTGPYLQYAHSRLRSVERNA 503 (607)
T ss_dssp CSCHHHHHHHHHHHHHHHHH--------HS-SCTTCCEECCHHHHHCCSSSSHHHHHHHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHHHHHHHHHH--------hc-cCCCCCcccCHHHHHHHhccchHHHHHHHHHHHHHHHHh
Confidence 455422 12 224578899999887654 33234455667888888665
No 25
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=37.16 E-value=29 Score=23.87 Aligned_cols=39 Identities=15% Similarity=0.242 Sum_probs=31.0
Q ss_pred ccccccCCCHhHHHHHHHHHHHhhhhHhhhhhhhhcccccc
Q psy7269 167 KETKQAEITFSSVEELEAAVATQGALLGTVDVIVMSSRTGA 207 (235)
Q Consensus 167 pe~~D~~fs~~~~~~~~~lv~~~GNlV~R~~~~~~~~~~~~ 207 (235)
|..+-..||.++=..+.+++..+||.-+.+...+ .|+++
T Consensus 19 P~i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l--gRt~~ 57 (73)
T 2llk_A 19 DRNHVGKYTPEEIEKLKELRIKHGNDWATIGAAL--GRSAS 57 (73)
T ss_dssp CCCCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH--TSCHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh--CCCHH
Confidence 3445577999998888899999999988887776 66654
Done!