RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7269
         (235 letters)



>d1rqga2 c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthetase
           (MetRS) {Pyrococcus abyssi [TaxId: 29292]}
          Length = 361

 Score = 51.6 bits (122), Expect = 2e-08
 Identities = 46/132 (34%), Positives = 69/132 (52%), Gaps = 15/132 (11%)

Query: 14  DQWSSNARVICKAWLKDGLKPRCITRDLKWGIPVPLPGFE--NKVFYVWFDAPIGYMSLT 71
             W  N + +  +W+++GL+ R ITRDL WGIPVPL   +   KV YVWF+APIGY+S+T
Sbjct: 171 QPWKPNVKNMVLSWIEEGLEERAITRDLNWGIPVPLDEEDMKGKVLYVWFEAPIGYISIT 230

Query: 72  QSYCGQYEAW-----WKSAPQSKITLYQFMAKDNVPFHSIMFPATLVAAGDQ-------- 118
             +  +         +      +  +  F+ KDN+PFH+I +PA L+A G          
Sbjct: 231 IEHFKRIGKPNEWKKYWLNIDGQTRVIHFIGKDNIPFHAIFWPAFLMAYGKYKDEEVEAE 290

Query: 119 YTKVNHIMATGH 130
           +     I A  +
Sbjct: 291 WNLPYDIPANEY 302


>d1rqga1 a.27.1.1 (A:397-606) Methionyl-tRNA synthetase (MetRS)
           {Pyrococcus abyssi [TaxId: 29292]}
          Length = 210

 Score = 34.8 bits (79), Expect = 0.005
 Identities = 10/39 (25%), Positives = 19/39 (48%)

Query: 130 HKIGTPAPLFRKIEQAQVDEWKLKYGGQQSKESSNNKKE 168
           HK+  P  LF+K+   Q+  + L Y  + + E +    +
Sbjct: 140 HKVRKPEILFKKVTDDQIIYFILNYMAKGNPEGARILLD 178


>d1pfva1 a.27.1.1 (A:389-550) Methionyl-tRNA synthetase (MetRS)
           {Escherichia coli [TaxId: 562]}
          Length = 162

 Score = 33.1 bits (75), Expect = 0.011
 Identities = 7/22 (31%), Positives = 12/22 (54%)

Query: 128 TGHKIGTPAPLFRKIEQAQVDE 149
            GHK+     L+ +I+  QV+ 
Sbjct: 132 LGHKVNPFKALYNRIDMRQVEA 153


>d1ffya3 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthetase
           (IleRS) {Staphylococcus aureus [TaxId: 1280]}
          Length = 450

 Score = 28.0 bits (61), Expect = 1.1
 Identities = 14/97 (14%), Positives = 28/97 (28%), Gaps = 1/97 (1%)

Query: 8   WVSETSDQWSSNARVICKAWLKDGLKPRCITRDLKWGIPVPLPGFENKVFYVWFDAPIGY 67
             +  +  +  N        +        I+R   WG+P+P+   EN    +  +     
Sbjct: 230 LDAIENTNFKVNWGKTRIYNMVRDRGEWVISRQRVWGVPLPVFYAENGEIIMTKETVNHV 289

Query: 68  MSLTQSYCGQYEAWWKSAPQSKITLYQFMAKDNVPFH 104
             L   + G    + + A       +      N  F 
Sbjct: 290 ADLFAEH-GSNIWFEREAKDLLPEGFTHPGSPNGTFT 325


>d1v29a_ d.149.1.1 (A:) Cobalt-containing nitrile hydratase
           {Bacillus smithii [TaxId: 1479]}
          Length = 203

 Score = 25.1 bits (55), Expect = 6.4
 Identities = 17/103 (16%), Positives = 28/103 (27%), Gaps = 26/103 (25%)

Query: 2   EDKLQSWVSETSDQWSSN--ARVICKAWLKDGLKPRCITR--------DLKWGIPVPLPG 51
            D ++  +     +      A+V+ KAW     K R +                   +  
Sbjct: 34  SDAIERVIKHYEHELGPMNGAKVVAKAWTDPEFKQRLLEDPETVLRELGYFGLQGEHIRV 93

Query: 52  FEN--KVFYVWFDAPIGYMSLTQSYC------GQYEAWWKSAP 86
            EN   V  V        +  T   C      G   +W+K   
Sbjct: 94  VENTDTVHNV--------VVCTLCSCYPWPLLGLPPSWYKEPA 128


>d1ugpa_ d.149.1.1 (A:) Cobalt-containing nitrile hydratase
           {Pseudonocardia thermophila [TaxId: 1848]}
          Length = 203

 Score = 25.1 bits (55), Expect = 7.2
 Identities = 16/103 (15%), Positives = 29/103 (28%), Gaps = 26/103 (25%)

Query: 2   EDKLQSWVSETSDQWSSN--ARVICKAWLKDGLKPRCITR--------DLKWGIPVPLPG 51
              +        ++   +  A+V+ KAW     K R +           +       +  
Sbjct: 35  TSMIDRMAEIYENEVGPHLGAKVVVKAWTDPEFKKRLLADGTEACKELGIGGLQGEDMMW 94

Query: 52  FEN--KVFYVWFDAPIGYMSLTQSYC------GQYEAWWKSAP 86
            EN  +V +V        +  T   C      G    W+K   
Sbjct: 95  VENTDEVHHV--------VVCTLCSCYPWPVLGLPPNWFKEPQ 129


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.132    0.409 

Gapped
Lambda     K      H
   0.267   0.0452    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 868,740
Number of extensions: 37974
Number of successful extensions: 89
Number of sequences better than 10.0: 1
Number of HSP's gapped: 89
Number of HSP's successfully gapped: 8
Length of query: 235
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 152
Effective length of database: 1,268,006
Effective search space: 192736912
Effective search space used: 192736912
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.1 bits)