Query psy7270
Match_columns 459
No_of_seqs 306 out of 1918
Neff 7.8
Searched_HMMs 46136
Date Fri Aug 16 22:25:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7270.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7270hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0245|consensus 100.0 2E-101 5E-106 812.3 38.7 358 1-368 3-380 (1221)
2 KOG4280|consensus 100.0 2E-91 4.4E-96 722.3 27.0 343 3-368 6-368 (574)
3 KOG0243|consensus 100.0 9.1E-88 2E-92 722.1 36.1 344 2-367 49-422 (1041)
4 KOG0241|consensus 100.0 2E-85 4.4E-90 680.8 35.4 357 2-367 4-382 (1714)
5 KOG0240|consensus 100.0 2E-82 4.4E-87 639.0 33.0 320 1-348 6-343 (607)
6 PLN03188 kinesin-12 family pro 100.0 7E-81 1.5E-85 675.0 35.0 337 2-365 98-469 (1320)
7 KOG0242|consensus 100.0 6.2E-80 1.3E-84 660.3 29.4 342 2-368 6-364 (675)
8 cd01365 KISc_KIF1A_KIF1B Kines 100.0 3.6E-78 7.9E-83 613.0 35.1 335 2-343 1-356 (356)
9 cd01370 KISc_KIP3_like Kinesin 100.0 2.3E-78 4.9E-83 609.8 32.6 314 3-336 1-338 (338)
10 cd01373 KISc_KLP2_like Kinesin 100.0 3.7E-78 7.9E-83 608.1 33.0 310 3-336 2-337 (337)
11 cd01368 KISc_KIF23_like Kinesi 100.0 1.9E-76 4E-81 597.2 32.6 316 3-334 2-345 (345)
12 cd01364 KISc_BimC_Eg5 Kinesin 100.0 5.4E-75 1.2E-79 589.4 33.4 322 2-345 2-352 (352)
13 cd01371 KISc_KIF3 Kinesin moto 100.0 7.5E-75 1.6E-79 583.7 32.5 314 2-336 1-333 (333)
14 cd01367 KISc_KIF2_like Kinesin 100.0 2.4E-74 5.1E-79 577.2 32.0 303 3-334 2-322 (322)
15 cd01369 KISc_KHC_KIF5 Kinesin 100.0 1.2E-73 2.6E-78 573.7 33.3 308 1-336 1-325 (325)
16 cd01376 KISc_KID_like Kinesin 100.0 9.3E-73 2E-77 565.3 32.4 298 3-334 1-319 (319)
17 cd01374 KISc_CENP_E Kinesin mo 100.0 1.5E-72 3.3E-77 564.6 32.4 305 3-336 1-321 (321)
18 cd01372 KISc_KIF4 Kinesin moto 100.0 1.3E-72 2.8E-77 570.0 31.6 311 2-337 1-341 (341)
19 cd01375 KISc_KIF9_like Kinesin 100.0 3.5E-71 7.5E-76 557.1 32.0 308 3-334 1-334 (334)
20 cd01366 KISc_C_terminal Kinesi 100.0 1E-69 2.2E-74 546.3 33.0 304 2-338 2-328 (329)
21 KOG0239|consensus 100.0 2.1E-70 4.7E-75 584.6 24.6 312 2-342 314-646 (670)
22 smart00129 KISc Kinesin motor, 100.0 1.1E-68 2.4E-73 540.3 33.8 315 3-343 1-335 (335)
23 cd00106 KISc Kinesin motor dom 100.0 5E-67 1.1E-71 526.9 33.7 307 3-334 1-328 (328)
24 PF00225 Kinesin: Kinesin moto 100.0 5.9E-68 1.3E-72 535.1 21.9 310 9-336 1-335 (335)
25 KOG0244|consensus 100.0 2E-68 4.3E-73 564.9 14.7 331 10-369 1-350 (913)
26 KOG0246|consensus 100.0 7.5E-66 1.6E-70 517.3 24.5 311 3-339 209-544 (676)
27 KOG0247|consensus 100.0 3.9E-65 8.6E-70 525.4 29.3 321 1-343 30-443 (809)
28 COG5059 KIP1 Kinesin-like prot 100.0 3.7E-58 8E-63 488.3 32.9 273 48-344 55-344 (568)
29 cd01363 Motor_domain Myosin an 100.0 3.5E-54 7.6E-59 399.1 18.4 179 73-315 8-186 (186)
30 COG5059 KIP1 Kinesin-like prot 98.0 1.4E-07 3.1E-12 101.4 -7.8 193 48-267 352-565 (568)
31 COG2805 PilT Tfp pilus assembl 95.2 0.011 2.4E-07 58.0 2.0 29 79-107 114-142 (353)
32 PF00308 Bac_DnaA: Bacterial d 94.6 0.02 4.3E-07 54.4 2.0 50 49-108 3-52 (219)
33 PRK06620 hypothetical protein; 93.3 0.063 1.4E-06 50.8 2.9 50 48-108 10-62 (214)
34 COG2804 PulE Type II secretory 93.2 0.044 9.6E-07 57.5 1.8 31 79-109 247-277 (500)
35 PRK06893 DNA replication initi 93.2 0.081 1.8E-06 50.5 3.5 27 83-109 32-58 (229)
36 PRK06526 transposase; Provisio 93.1 0.048 1E-06 53.0 1.8 37 68-109 81-117 (254)
37 smart00053 DYNc Dynamin, GTPas 92.8 0.32 6.9E-06 46.8 6.9 54 167-237 85-138 (240)
38 PRK08181 transposase; Validate 92.5 0.14 3E-06 50.2 4.1 45 87-133 105-151 (269)
39 PRK14086 dnaA chromosomal repl 92.3 0.12 2.6E-06 56.1 3.6 38 70-109 296-333 (617)
40 PRK06835 DNA replication prote 92.2 0.18 4E-06 50.9 4.7 37 71-109 166-202 (329)
41 PF04851 ResIII: Type III rest 91.6 0.12 2.7E-06 46.3 2.4 37 69-109 7-44 (184)
42 PF09726 Macoilin: Transmembra 91.4 2 4.3E-05 47.7 11.9 28 348-375 417-444 (697)
43 COG0556 UvrB Helicase subunit 91.3 0.15 3.2E-06 53.7 2.8 39 66-109 13-51 (663)
44 PRK09087 hypothetical protein; 90.9 0.23 5E-06 47.4 3.6 47 49-108 16-62 (226)
45 COG1474 CDC6 Cdc6-related prot 90.5 0.22 4.7E-06 51.1 3.2 34 74-107 26-59 (366)
46 PRK12377 putative replication 90.5 0.27 6E-06 47.6 3.8 39 69-109 82-120 (248)
47 cd00009 AAA The AAA+ (ATPases 90.4 0.22 4.7E-06 42.3 2.8 27 81-107 10-36 (151)
48 PRK05642 DNA replication initi 90.4 0.23 5E-06 47.6 3.2 19 91-109 46-64 (234)
49 TIGR02928 orc1/cdc6 family rep 90.4 0.25 5.4E-06 50.3 3.6 39 68-107 18-57 (365)
50 PF13245 AAA_19: Part of AAA d 90.3 0.15 3.3E-06 39.8 1.5 26 82-108 3-28 (76)
51 PRK00411 cdc6 cell division co 90.0 0.3 6.4E-06 50.3 3.8 39 68-107 33-72 (394)
52 PF12325 TMF_TATA_bd: TATA ele 90.0 4.7 0.0001 34.5 10.4 93 350-455 24-116 (120)
53 PRK07952 DNA replication prote 89.7 0.38 8.2E-06 46.5 4.0 39 69-109 80-118 (244)
54 PRK08084 DNA replication initi 89.6 0.32 7E-06 46.6 3.5 37 69-109 28-64 (235)
55 PRK08116 hypothetical protein; 89.4 0.29 6.2E-06 48.0 3.0 40 68-108 91-132 (268)
56 PRK14088 dnaA chromosomal repl 89.3 0.26 5.5E-06 51.9 2.7 38 69-109 112-149 (440)
57 PRK10436 hypothetical protein; 89.3 0.18 4E-06 53.2 1.6 28 81-108 209-236 (462)
58 PRK00149 dnaA chromosomal repl 89.2 0.26 5.6E-06 52.0 2.7 39 69-109 129-167 (450)
59 TIGR02538 type_IV_pilB type IV 88.8 0.21 4.5E-06 54.3 1.7 28 81-108 307-334 (564)
60 TIGR00362 DnaA chromosomal rep 88.8 0.31 6.8E-06 50.6 3.0 39 69-109 117-155 (405)
61 PRK08727 hypothetical protein; 88.7 0.43 9.4E-06 45.6 3.6 19 91-109 42-60 (233)
62 TIGR02533 type_II_gspE general 88.6 0.25 5.4E-06 52.7 2.0 28 81-108 233-260 (486)
63 cd00046 DEXDc DEAD-like helica 88.3 0.18 3.9E-06 42.4 0.6 17 93-109 3-19 (144)
64 TIGR02525 plasmid_TraJ plasmid 88.0 0.29 6.3E-06 50.2 2.0 26 81-107 141-166 (372)
65 KOG0989|consensus 88.0 0.45 9.8E-06 47.0 3.2 35 73-107 39-74 (346)
66 TIGR01420 pilT_fam pilus retra 87.7 0.3 6.5E-06 49.6 1.9 29 80-108 112-140 (343)
67 PF00270 DEAD: DEAD/DEAH box h 87.5 0.34 7.4E-06 43.0 2.0 27 81-109 7-33 (169)
68 cd01131 PilT Pilus retraction 87.5 0.22 4.9E-06 46.3 0.8 18 90-107 1-18 (198)
69 TIGR02524 dot_icm_DotB Dot/Icm 87.3 0.33 7.2E-06 49.6 2.0 23 85-107 129-151 (358)
70 PF00437 T2SE: Type II/IV secr 87.3 0.29 6.4E-06 47.7 1.5 28 80-107 114-144 (270)
71 COG1484 DnaC DNA replication p 87.0 0.66 1.4E-05 45.1 3.8 39 68-109 86-124 (254)
72 PF13401 AAA_22: AAA domain; P 87.0 0.2 4.3E-06 42.6 0.2 18 90-107 4-21 (131)
73 PRK08939 primosomal protein Dn 86.8 0.44 9.5E-06 47.6 2.5 40 69-109 135-175 (306)
74 PRK08903 DnaA regulatory inact 86.8 0.63 1.4E-05 44.0 3.5 20 88-107 40-59 (227)
75 smart00382 AAA ATPases associa 86.3 0.29 6.2E-06 41.1 0.7 19 91-109 3-21 (148)
76 PF01695 IstB_IS21: IstB-like 86.3 0.51 1.1E-05 43.3 2.4 19 91-109 48-66 (178)
77 PF13604 AAA_30: AAA domain; P 86.3 0.4 8.8E-06 44.6 1.8 27 81-107 9-35 (196)
78 cd01129 PulE-GspE PulE/GspE Th 86.2 0.43 9.3E-06 46.7 2.0 28 81-108 71-98 (264)
79 PRK14087 dnaA chromosomal repl 85.9 0.53 1.1E-05 49.7 2.6 39 69-109 122-160 (450)
80 PF00063 Myosin_head: Myosin h 85.8 2.1 4.5E-05 47.8 7.4 35 72-107 67-102 (689)
81 COG0593 DnaA ATPase involved i 85.8 0.51 1.1E-05 48.8 2.4 71 48-128 81-155 (408)
82 COG5008 PilU Tfp pilus assembl 85.6 0.57 1.2E-05 45.5 2.4 34 74-107 110-144 (375)
83 PTZ00112 origin recognition co 85.2 0.65 1.4E-05 52.3 3.0 20 88-107 779-798 (1164)
84 PF01935 DUF87: Domain of unkn 85.1 0.32 7E-06 46.0 0.6 15 93-107 26-40 (229)
85 PF12846 AAA_10: AAA-like doma 84.7 0.36 7.7E-06 47.2 0.7 19 90-108 1-19 (304)
86 TIGR03420 DnaA_homol_Hda DnaA 84.5 0.9 2E-05 42.7 3.3 21 87-107 35-55 (226)
87 PF05673 DUF815: Protein of un 84.5 1.9 4.2E-05 41.5 5.5 28 82-109 43-71 (249)
88 PF05496 RuvB_N: Holliday junc 83.7 1.8 3.9E-05 41.2 4.8 41 65-106 24-66 (233)
89 PF00448 SRP54: SRP54-type pro 83.5 0.42 9.1E-06 44.5 0.5 16 92-107 3-18 (196)
90 PF09731 Mitofilin: Mitochondr 83.3 21 0.00046 38.9 13.7 25 345-369 247-271 (582)
91 PRK10884 SH3 domain-containing 83.2 15 0.00032 34.6 10.7 24 348-371 92-115 (206)
92 TIGR03015 pepcterm_ATPase puta 82.9 1 2.2E-05 43.5 3.0 23 85-107 38-60 (269)
93 cd01382 MYSc_type_VI Myosin mo 82.8 6 0.00013 44.3 9.3 34 73-107 74-108 (717)
94 TIGR02782 TrbB_P P-type conjug 82.8 0.65 1.4E-05 46.2 1.6 27 80-107 123-149 (299)
95 PRK09183 transposase/IS protei 82.7 0.74 1.6E-05 44.9 1.9 21 87-109 101-121 (259)
96 PF13479 AAA_24: AAA domain 82.3 0.61 1.3E-05 43.9 1.1 20 90-109 3-22 (213)
97 PF00004 AAA: ATPase family as 82.1 0.56 1.2E-05 39.6 0.8 15 93-107 1-15 (132)
98 PRK12402 replication factor C 81.9 1.1 2.4E-05 44.9 2.9 21 87-107 33-53 (337)
99 PRK06921 hypothetical protein; 81.8 0.99 2.2E-05 44.2 2.5 32 78-109 102-136 (266)
100 PRK13894 conjugal transfer ATP 81.7 0.84 1.8E-05 45.9 1.9 27 80-107 139-165 (319)
101 PHA00729 NTP-binding motif con 81.6 1.3 2.9E-05 42.1 3.1 30 78-107 5-34 (226)
102 PF13086 AAA_11: AAA domain; P 81.4 0.8 1.7E-05 42.7 1.6 26 82-108 10-35 (236)
103 PF01637 Arch_ATPase: Archaeal 81.2 0.78 1.7E-05 42.8 1.4 28 80-107 10-37 (234)
104 PRK12723 flagellar biosynthesi 80.6 1.7 3.7E-05 44.9 3.8 18 90-107 174-191 (388)
105 PF05970 PIF1: PIF1-like helic 80.5 1.4 3E-05 45.2 3.1 36 68-107 4-39 (364)
106 PRK13833 conjugal transfer pro 80.4 0.93 2E-05 45.6 1.7 27 80-107 135-161 (323)
107 PF02562 PhoH: PhoH-like prote 80.4 1.1 2.5E-05 42.0 2.2 19 89-107 18-36 (205)
108 KOG0926|consensus 80.3 1.1 2.5E-05 49.4 2.4 30 90-120 271-308 (1172)
109 cd01378 MYSc_type_I Myosin mot 80.3 6.8 0.00015 43.6 8.6 34 73-107 69-103 (674)
110 PHA02244 ATPase-like protein 80.3 1.8 4E-05 44.3 3.8 37 69-107 100-136 (383)
111 TIGR00635 ruvB Holliday juncti 79.9 1.5 3.2E-05 43.4 3.0 40 67-107 6-47 (305)
112 COG4962 CpaF Flp pilus assembl 79.9 1.1 2.4E-05 45.1 2.1 27 80-107 164-190 (355)
113 cd01130 VirB11-like_ATPase Typ 79.6 1.2 2.7E-05 40.8 2.2 27 80-107 16-42 (186)
114 COG1223 Predicted ATPase (AAA+ 79.5 0.79 1.7E-05 44.4 0.9 18 90-107 151-168 (368)
115 smart00242 MYSc Myosin. Large 79.5 8.3 0.00018 43.0 9.0 36 72-107 74-109 (677)
116 PF13207 AAA_17: AAA domain; P 79.3 0.88 1.9E-05 38.1 1.0 16 92-107 1-16 (121)
117 cd00124 MYSc Myosin motor doma 79.2 10 0.00022 42.3 9.6 34 73-107 69-103 (679)
118 TIGR01242 26Sp45 26S proteasom 79.1 4.6 0.0001 41.3 6.4 17 91-107 157-173 (364)
119 smart00487 DEXDc DEAD-like hel 78.9 1.3 2.8E-05 39.6 2.1 26 83-109 18-43 (201)
120 TIGR03499 FlhF flagellar biosy 78.8 2.2 4.7E-05 42.1 3.8 17 92-108 196-212 (282)
121 PF00580 UvrD-helicase: UvrD/R 78.6 0.87 1.9E-05 44.7 0.9 21 89-109 12-32 (315)
122 cd01377 MYSc_type_II Myosin mo 78.5 11 0.00024 42.1 9.6 35 72-107 73-108 (693)
123 PF07724 AAA_2: AAA domain (Cd 78.5 1 2.2E-05 41.0 1.2 17 91-107 4-20 (171)
124 PF13191 AAA_16: AAA ATPase do 78.4 0.77 1.7E-05 41.3 0.4 26 82-107 16-41 (185)
125 PRK12422 chromosomal replicati 78.3 1.9 4.1E-05 45.4 3.4 51 49-109 106-160 (445)
126 KOG0340|consensus 78.3 2.2 4.8E-05 43.0 3.5 30 79-110 35-64 (442)
127 cd01384 MYSc_type_XI Myosin mo 77.9 12 0.00026 41.7 9.5 34 73-107 71-105 (674)
128 PF13671 AAA_33: AAA domain; P 77.8 0.94 2E-05 39.1 0.8 15 93-107 2-16 (143)
129 KOG0971|consensus 77.5 33 0.00072 38.7 12.3 43 409-451 269-313 (1243)
130 cd00268 DEADc DEAD-box helicas 77.3 1.6 3.6E-05 40.1 2.3 23 82-106 30-52 (203)
131 PF00910 RNA_helicase: RNA hel 77.3 0.76 1.6E-05 38.2 0.0 27 93-132 1-27 (107)
132 smart00763 AAA_PrkA PrkA AAA d 77.2 6.1 0.00013 40.3 6.5 59 69-128 55-141 (361)
133 PRK13764 ATPase; Provisional 77.0 1.3 2.8E-05 48.3 1.7 20 88-107 255-274 (602)
134 PRK13851 type IV secretion sys 77.0 0.98 2.1E-05 45.9 0.7 27 80-107 153-179 (344)
135 PRK13900 type IV secretion sys 76.6 1.7 3.6E-05 44.0 2.3 27 80-107 151-177 (332)
136 PF01580 FtsK_SpoIIIE: FtsK/Sp 76.5 0.9 1.9E-05 42.2 0.3 16 92-107 40-55 (205)
137 PRK06547 hypothetical protein; 76.5 2.4 5.3E-05 38.5 3.1 28 80-107 5-32 (172)
138 PRK13342 recombination factor 76.2 1.4 3.1E-05 45.8 1.7 39 68-107 15-53 (413)
139 PTZ00361 26 proteosome regulat 76.0 3.8 8.2E-05 43.1 4.8 16 92-107 219-234 (438)
140 PTZ00424 helicase 45; Provisio 75.6 1.7 3.7E-05 44.7 2.1 26 80-107 57-82 (401)
141 PRK11776 ATP-dependent RNA hel 75.3 1.8 3.9E-05 45.6 2.2 23 82-106 35-57 (460)
142 KOG0742|consensus 74.5 4.2 9.1E-05 42.0 4.4 41 92-134 386-441 (630)
143 PTZ00454 26S protease regulato 74.5 2.9 6.3E-05 43.4 3.4 18 90-107 179-196 (398)
144 PF03215 Rad17: Rad17 cell cyc 74.4 2 4.4E-05 46.1 2.3 29 79-107 32-62 (519)
145 PRK14722 flhF flagellar biosyn 74.4 1.3 2.9E-05 45.4 0.9 18 90-107 137-154 (374)
146 COG1419 FlhF Flagellar GTP-bin 74.3 2.5 5.5E-05 43.5 2.9 37 71-107 180-220 (407)
147 PRK11192 ATP-dependent RNA hel 73.9 2 4.4E-05 44.8 2.2 24 81-106 31-54 (434)
148 PF07728 AAA_5: AAA domain (dy 73.8 1.2 2.5E-05 38.5 0.3 15 93-107 2-16 (139)
149 COG1219 ClpX ATP-dependent pro 73.7 1.5 3.3E-05 43.7 1.1 16 90-105 97-112 (408)
150 PRK00080 ruvB Holliday junctio 73.5 2.5 5.3E-05 42.6 2.6 39 68-107 28-68 (328)
151 PRK10536 hypothetical protein; 73.4 2.2 4.8E-05 41.5 2.1 18 90-107 74-91 (262)
152 TIGR02881 spore_V_K stage V sp 73.0 3.6 7.8E-05 39.9 3.5 18 90-107 42-59 (261)
153 PF06048 DUF927: Domain of unk 72.9 3.2 6.9E-05 41.0 3.2 33 74-107 178-210 (286)
154 PF13238 AAA_18: AAA domain; P 72.8 1.5 3.3E-05 36.7 0.8 15 93-107 1-15 (129)
155 KOG0736|consensus 72.7 5.1 0.00011 44.5 4.8 35 71-105 682-720 (953)
156 PLN00020 ribulose bisphosphate 72.4 3.9 8.4E-05 41.9 3.6 36 71-106 125-164 (413)
157 KOG2129|consensus 71.9 54 0.0012 33.8 11.4 34 336-369 237-273 (552)
158 PRK04837 ATP-dependent RNA hel 71.6 2.4 5.3E-05 44.2 2.1 25 81-107 38-62 (423)
159 KOG2373|consensus 71.5 3.9 8.5E-05 41.2 3.3 27 80-107 261-290 (514)
160 PLN03025 replication factor C 71.3 3.3 7.1E-05 41.5 2.9 21 88-108 32-52 (319)
161 PF06414 Zeta_toxin: Zeta toxi 71.0 1.8 3.9E-05 40.1 0.9 19 89-107 14-32 (199)
162 PRK13341 recombination factor 70.9 2.7 5.9E-05 47.0 2.4 39 69-108 32-70 (725)
163 PRK11331 5-methylcytosine-spec 70.8 2.8 6.1E-05 44.0 2.3 30 301-334 320-349 (459)
164 COG2256 MGS1 ATPase related to 70.4 2.2 4.7E-05 43.8 1.4 38 68-106 27-64 (436)
165 PRK10590 ATP-dependent RNA hel 70.2 2.9 6.3E-05 44.1 2.3 24 81-106 31-54 (456)
166 COG1201 Lhr Lhr-like helicases 70.1 3.4 7.3E-05 46.5 2.9 25 81-107 30-54 (814)
167 KOG2543|consensus 70.1 2 4.3E-05 43.9 1.0 19 89-107 29-47 (438)
168 KOG1532|consensus 69.7 1.2E+02 0.0026 30.0 17.0 35 419-453 268-302 (366)
169 PRK00440 rfc replication facto 69.7 3.7 8.1E-05 40.6 2.9 21 87-107 35-55 (319)
170 PHA02544 44 clamp loader, smal 69.4 3.6 7.7E-05 40.9 2.7 21 87-107 39-60 (316)
171 PRK11448 hsdR type I restricti 69.4 2.7 5.9E-05 49.3 2.0 34 75-109 419-452 (1123)
172 TIGR00348 hsdR type I site-spe 69.2 3.4 7.4E-05 45.9 2.7 31 78-109 247-282 (667)
173 KOG0727|consensus 69.2 4.1 8.8E-05 39.4 2.8 66 70-135 164-248 (408)
174 PRK04195 replication factor C 69.1 4.3 9.3E-05 43.2 3.3 37 70-107 19-56 (482)
175 PRK04328 hypothetical protein; 68.5 3.8 8.3E-05 39.5 2.6 28 78-105 8-38 (249)
176 PRK11637 AmiB activator; Provi 68.5 52 0.0011 34.4 11.3 17 350-366 48-64 (428)
177 PRK11637 AmiB activator; Provi 68.3 1E+02 0.0022 32.2 13.4 11 355-365 102-112 (428)
178 PF09726 Macoilin: Transmembra 68.1 30 0.00066 38.6 9.7 25 414-438 543-567 (697)
179 TIGR02903 spore_lon_C ATP-depe 68.1 4.3 9.3E-05 44.6 3.2 27 81-107 166-192 (615)
180 KOG1029|consensus 67.7 72 0.0016 35.6 11.9 16 76-91 72-87 (1118)
181 TIGR01618 phage_P_loop phage n 67.6 2.3 4.9E-05 40.4 0.8 20 90-109 12-31 (220)
182 TIGR02640 gas_vesic_GvpN gas v 67.5 5.7 0.00012 38.6 3.6 30 76-107 9-38 (262)
183 KOG0971|consensus 67.5 1.7E+02 0.0036 33.6 14.7 20 439-458 428-447 (1243)
184 TIGR03319 YmdA_YtgF conserved 67.4 49 0.0011 35.6 10.9 10 356-365 58-67 (514)
185 KOG3850|consensus 67.4 53 0.0012 33.5 10.2 8 124-131 85-92 (455)
186 PRK00771 signal recognition pa 67.3 7.4 0.00016 40.9 4.6 18 90-107 95-112 (437)
187 PF12775 AAA_7: P-loop contain 66.9 3.4 7.3E-05 40.6 1.9 26 81-107 25-50 (272)
188 PF02456 Adeno_IVa2: Adenoviru 66.8 2.6 5.6E-05 41.9 1.0 16 92-107 89-104 (369)
189 PRK12704 phosphodiesterase; Pr 66.4 53 0.0011 35.4 10.9 10 356-365 64-73 (520)
190 KOG0953|consensus 66.3 4.9 0.00011 42.9 2.9 43 92-134 193-238 (700)
191 COG4096 HsdR Type I site-speci 66.3 6.8 0.00015 43.7 4.2 39 70-109 165-204 (875)
192 TIGR00614 recQ_fam ATP-depende 66.3 4 8.7E-05 43.3 2.4 25 81-107 19-43 (470)
193 PRK14974 cell division protein 66.0 7.9 0.00017 39.2 4.3 18 90-107 140-157 (336)
194 PF13555 AAA_29: P-loop contai 65.9 2.7 5.9E-05 31.5 0.7 15 93-107 26-40 (62)
195 COG1222 RPT1 ATP-dependent 26S 65.6 2.9 6.3E-05 42.4 1.1 35 71-105 161-200 (406)
196 smart00489 DEXDc3 DEAD-like he 65.5 4.9 0.00011 39.8 2.7 35 68-108 11-45 (289)
197 smart00488 DEXDc2 DEAD-like he 65.5 4.9 0.00011 39.8 2.7 35 68-108 11-45 (289)
198 PF10267 Tmemb_cc2: Predicted 65.1 77 0.0017 32.9 11.3 18 161-178 114-131 (395)
199 cd01123 Rad51_DMC1_radA Rad51_ 64.9 3.7 8.1E-05 38.8 1.7 30 78-107 4-36 (235)
200 cd01120 RecA-like_NTPases RecA 64.9 2.5 5.5E-05 36.7 0.5 15 93-107 2-16 (165)
201 COG0606 Predicted ATPase with 64.6 4.2 9E-05 42.7 2.1 31 84-122 194-224 (490)
202 COG1125 OpuBA ABC-type proline 64.5 2.7 5.9E-05 40.7 0.7 39 304-350 185-223 (309)
203 PF05729 NACHT: NACHT domain 64.4 3 6.5E-05 36.5 0.9 16 92-107 2-17 (166)
204 TIGR00376 DNA helicase, putati 64.2 4.3 9.3E-05 44.9 2.2 18 92-109 175-192 (637)
205 TIGR02237 recomb_radB DNA repa 64.2 4.2 9.2E-05 37.7 1.9 25 83-107 2-29 (209)
206 cd01383 MYSc_type_VIII Myosin 64.1 7.2 0.00016 43.4 3.9 34 73-107 75-109 (677)
207 PRK15455 PrkA family serine pr 64.1 17 0.00038 39.5 6.6 62 69-130 80-163 (644)
208 PRK05703 flhF flagellar biosyn 64.0 2.9 6.3E-05 43.8 0.8 17 91-107 222-238 (424)
209 PF06309 Torsin: Torsin; Inte 63.8 8.3 0.00018 33.3 3.4 15 93-107 56-70 (127)
210 PRK09039 hypothetical protein; 63.6 57 0.0012 33.1 10.1 25 414-438 142-166 (343)
211 PRK00106 hypothetical protein; 63.6 66 0.0014 34.7 10.9 10 356-365 79-88 (535)
212 PRK11634 ATP-dependent RNA hel 63.4 4.6 9.9E-05 44.6 2.2 25 81-107 36-60 (629)
213 cd01381 MYSc_type_VII Myosin m 63.3 7.5 0.00016 43.2 3.9 34 73-107 69-103 (671)
214 PF00735 Septin: Septin; Inte 63.2 3 6.5E-05 41.1 0.7 19 87-105 1-19 (281)
215 cd01387 MYSc_type_XV Myosin mo 62.8 7.3 0.00016 43.3 3.7 34 73-107 70-104 (677)
216 cd01385 MYSc_type_IX Myosin mo 62.7 7.2 0.00016 43.5 3.6 35 72-107 76-111 (692)
217 PRK03992 proteasome-activating 62.6 3.2 6.9E-05 42.9 0.8 18 90-107 165-182 (389)
218 PF10236 DAP3: Mitochondrial r 62.3 5.6 0.00012 39.8 2.5 27 82-108 15-41 (309)
219 TIGR01359 UMP_CMP_kin_fam UMP- 62.2 3.6 7.9E-05 37.2 1.0 14 93-106 2-15 (183)
220 cd02021 GntK Gluconate kinase 62.2 3.6 7.8E-05 35.9 1.0 15 93-107 2-16 (150)
221 PRK00131 aroK shikimate kinase 61.9 4 8.6E-05 36.3 1.2 17 91-107 5-21 (175)
222 PHA02624 large T antigen; Prov 61.8 7.2 0.00016 42.5 3.3 28 80-107 419-448 (647)
223 PRK04537 ATP-dependent RNA hel 61.7 5.1 0.00011 43.7 2.2 25 81-107 39-63 (572)
224 PRK14961 DNA polymerase III su 61.6 6.9 0.00015 40.0 3.1 35 69-107 20-55 (363)
225 TIGR02788 VirB11 P-type DNA tr 61.6 6.5 0.00014 39.3 2.8 28 79-107 134-161 (308)
226 cd01126 TraG_VirD4 The TraG/Tr 61.6 4.5 9.7E-05 41.6 1.7 16 93-108 2-17 (384)
227 PF03962 Mnd1: Mnd1 family; I 61.4 1E+02 0.0022 28.4 10.5 12 258-269 30-41 (188)
228 KOG1803|consensus 61.3 3.4 7.3E-05 44.5 0.7 17 91-107 202-218 (649)
229 PRK10416 signal recognition pa 61.1 9.9 0.00021 38.2 4.0 17 91-107 115-131 (318)
230 CHL00081 chlI Mg-protoporyphyr 61.1 6 0.00013 40.3 2.5 43 50-107 13-55 (350)
231 PRK11889 flhF flagellar biosyn 61.1 8.4 0.00018 40.0 3.5 17 91-107 242-258 (436)
232 PRK06995 flhF flagellar biosyn 61.0 3.5 7.5E-05 43.8 0.7 17 91-107 257-273 (484)
233 TIGR00631 uvrb excinuclease AB 60.8 6.1 0.00013 43.8 2.6 41 64-109 8-48 (655)
234 PF13476 AAA_23: AAA domain; P 60.6 3.8 8.1E-05 37.2 0.8 17 91-107 20-36 (202)
235 PF07798 DUF1640: Protein of u 60.6 1.3E+02 0.0029 27.3 11.7 38 410-448 121-158 (177)
236 PRK06067 flagellar accessory p 60.5 5.4 0.00012 37.9 1.9 29 78-106 10-41 (234)
237 CHL00181 cbbX CbbX; Provisiona 60.5 9.7 0.00021 37.6 3.8 15 93-107 62-76 (287)
238 PRK07261 topology modulation p 60.3 4.1 8.9E-05 36.9 1.0 15 93-107 3-17 (171)
239 PRK10884 SH3 domain-containing 60.3 45 0.00098 31.3 8.0 22 353-374 90-111 (206)
240 KOG0729|consensus 60.3 4.6 0.0001 39.3 1.4 21 87-107 206-228 (435)
241 PHA02653 RNA helicase NPH-II; 60.3 7 0.00015 43.4 3.0 33 68-106 163-195 (675)
242 TIGR03158 cas3_cyano CRISPR-as 60.0 7.2 0.00016 39.8 2.9 26 82-107 6-31 (357)
243 cd01380 MYSc_type_V Myosin mot 59.9 8.7 0.00019 42.9 3.6 34 73-107 69-103 (691)
244 PRK12724 flagellar biosynthesi 59.9 9.1 0.0002 40.0 3.5 17 91-107 224-240 (432)
245 PRK10917 ATP-dependent DNA hel 59.7 8.2 0.00018 43.0 3.4 38 66-107 262-299 (681)
246 TIGR03819 heli_sec_ATPase heli 59.7 6.1 0.00013 40.1 2.2 28 79-107 168-195 (340)
247 cd00464 SK Shikimate kinase (S 59.5 4 8.8E-05 35.5 0.8 15 92-106 1-15 (154)
248 PF13851 GAS: Growth-arrest sp 59.4 1.5E+02 0.0033 27.6 11.7 18 349-366 27-44 (201)
249 TIGR01241 FtsH_fam ATP-depende 59.4 3.6 7.8E-05 43.9 0.6 17 91-107 89-105 (495)
250 KOG0652|consensus 59.3 4.6 9.9E-05 39.3 1.1 14 92-105 207-220 (424)
251 PF13173 AAA_14: AAA domain 58.9 4.2 9E-05 34.7 0.8 16 92-107 4-19 (128)
252 PRK09270 nucleoside triphospha 58.9 11 0.00024 35.7 3.7 36 72-107 14-50 (229)
253 PRK08118 topology modulation p 58.8 4.5 9.8E-05 36.5 1.0 13 93-105 4-16 (167)
254 PF02367 UPF0079: Uncharacteri 58.8 9.5 0.00021 32.7 2.9 17 91-107 16-32 (123)
255 PF07106 TBPIP: Tat binding pr 58.8 83 0.0018 28.3 9.3 28 349-376 72-99 (169)
256 PRK01297 ATP-dependent RNA hel 58.7 5.9 0.00013 42.0 2.0 26 80-107 116-141 (475)
257 PLN00206 DEAD-box ATP-dependen 58.6 7.1 0.00015 42.0 2.7 24 81-106 151-174 (518)
258 TIGR02880 cbbX_cfxQ probable R 58.6 4 8.7E-05 40.3 0.7 16 92-107 60-75 (284)
259 cd01850 CDC_Septin CDC/Septin. 58.5 4.7 0.0001 39.6 1.1 21 87-107 1-21 (276)
260 PF04156 IncA: IncA protein; 58.4 86 0.0019 28.6 9.6 12 353-364 92-103 (191)
261 PRK05580 primosome assembly pr 58.2 6.6 0.00014 43.8 2.4 35 67-108 146-180 (679)
262 PRK09361 radB DNA repair and r 58.0 7.6 0.00016 36.5 2.5 30 78-107 8-40 (225)
263 TIGR01313 therm_gnt_kin carboh 57.9 3.9 8.5E-05 36.3 0.5 14 93-106 1-14 (163)
264 COG1126 GlnQ ABC-type polar am 57.9 4.3 9.3E-05 38.4 0.7 23 85-107 17-45 (240)
265 cd01428 ADK Adenylate kinase ( 57.4 4.9 0.00011 36.6 1.0 15 93-107 2-16 (194)
266 PRK06696 uridine kinase; Valid 57.1 12 0.00025 35.3 3.6 36 71-107 4-39 (223)
267 PRK12726 flagellar biosynthesi 57.1 4.6 9.9E-05 41.6 0.8 18 91-108 207-224 (407)
268 cd00820 PEPCK_HprK Phosphoenol 57.0 4.9 0.00011 33.6 0.8 17 91-107 16-32 (107)
269 TIGR03238 dnd_assoc_3 dnd syst 57.0 9.1 0.0002 40.6 3.0 28 82-109 18-51 (504)
270 KOG3859|consensus 57.0 6.1 0.00013 38.7 1.6 25 83-107 35-59 (406)
271 cd01127 TrwB Bacterial conjuga 56.7 4.3 9.2E-05 42.3 0.5 17 91-107 43-59 (410)
272 PRK10865 protein disaggregatio 56.7 9.5 0.00021 43.7 3.4 38 69-107 572-615 (857)
273 CHL00195 ycf46 Ycf46; Provisio 56.7 4.8 0.0001 43.0 0.9 17 91-107 260-276 (489)
274 TIGR02688 conserved hypothetic 56.4 5.8 0.00013 41.4 1.5 84 86-185 207-291 (449)
275 PRK09039 hypothetical protein; 56.4 1.6E+02 0.0035 29.9 11.8 54 397-451 143-199 (343)
276 TIGR02322 phosphon_PhnN phosph 56.3 4.8 0.0001 36.3 0.8 16 92-107 3-18 (179)
277 KOG0335|consensus 56.3 4 8.7E-05 42.9 0.3 22 87-110 110-131 (482)
278 KOG0739|consensus 56.2 5.3 0.00011 39.6 1.0 65 71-135 143-225 (439)
279 TIGR00602 rad24 checkpoint pro 56.2 6.8 0.00015 43.1 2.0 39 68-107 87-127 (637)
280 PF12774 AAA_6: Hydrolytic ATP 56.1 8.1 0.00017 37.0 2.3 41 94-134 36-84 (231)
281 KOG0354|consensus 55.9 8.9 0.00019 42.6 2.8 24 80-106 69-92 (746)
282 PRK14962 DNA polymerase III su 55.8 9.6 0.00021 40.5 3.0 35 69-107 18-53 (472)
283 TIGR03689 pup_AAA proteasome A 55.6 4.8 0.0001 43.2 0.7 16 92-107 218-233 (512)
284 TIGR01389 recQ ATP-dependent D 55.6 7.8 0.00017 42.4 2.4 26 80-107 20-45 (591)
285 PRK14721 flhF flagellar biosyn 55.5 5.1 0.00011 41.9 0.9 18 90-107 191-208 (420)
286 TIGR02231 conserved hypothetic 55.5 1.3E+02 0.0029 32.3 11.8 23 347-369 69-91 (525)
287 PF05055 DUF677: Protein of un 55.4 1.6E+02 0.0034 29.9 11.4 65 255-340 28-92 (336)
288 PF04156 IncA: IncA protein; 55.3 1.6E+02 0.0034 26.8 10.8 15 353-367 85-99 (191)
289 PRK11034 clpA ATP-dependent Cl 55.0 11 0.00025 42.4 3.6 38 69-107 462-505 (758)
290 PF15294 Leu_zip: Leucine zipp 55.0 93 0.002 30.6 9.3 90 349-438 132-230 (278)
291 cd01386 MYSc_type_XVIII Myosin 55.0 11 0.00023 42.7 3.3 34 73-107 69-103 (767)
292 COG5019 CDC3 Septin family pro 55.0 7.7 0.00017 39.4 2.0 24 87-110 20-46 (373)
293 cd01394 radB RadB. The archaea 54.9 9.3 0.0002 35.7 2.5 29 79-107 5-36 (218)
294 PF09755 DUF2046: Uncharacteri 54.9 2.3E+02 0.005 28.3 13.3 52 400-452 137-188 (310)
295 PRK05342 clpX ATP-dependent pr 54.9 12 0.00026 39.1 3.5 18 90-107 108-125 (412)
296 COG0630 VirB11 Type IV secreto 54.9 4.7 0.0001 40.4 0.5 17 91-107 144-160 (312)
297 PRK14531 adenylate kinase; Pro 54.9 5.8 0.00013 36.2 1.1 15 92-106 4-18 (183)
298 cd01124 KaiC KaiC is a circadi 54.9 5.7 0.00012 35.8 1.0 15 93-107 2-16 (187)
299 PF12004 DUF3498: Domain of un 54.8 4 8.8E-05 43.2 0.0 21 350-370 370-390 (495)
300 PRK14723 flhF flagellar biosyn 54.7 5.5 0.00012 44.6 1.0 17 91-107 186-202 (767)
301 TIGR00064 ftsY signal recognit 54.7 6.2 0.00013 38.7 1.3 17 91-107 73-89 (272)
302 KOG4807|consensus 54.4 1.3E+02 0.0028 30.9 10.3 18 351-368 293-310 (593)
303 cd01379 MYSc_type_III Myosin m 54.4 11 0.00025 41.7 3.4 35 72-107 68-103 (653)
304 PF11221 Med21: Subunit 21 of 54.4 1.4E+02 0.003 26.3 9.7 41 386-426 92-132 (144)
305 TIGR00643 recG ATP-dependent D 54.4 11 0.00024 41.6 3.3 38 66-107 236-273 (630)
306 PRK10867 signal recognition pa 54.3 15 0.00032 38.7 4.0 18 90-107 100-117 (433)
307 KOG3990|consensus 54.2 71 0.0015 30.7 8.0 25 350-374 226-250 (305)
308 PF08298 AAA_PrkA: PrkA AAA do 54.1 32 0.0007 35.0 6.2 58 71-129 67-142 (358)
309 TIGR03877 thermo_KaiC_1 KaiC d 54.1 11 0.00023 36.0 2.8 27 79-105 7-36 (237)
310 TIGR03744 traC_PFL_4706 conjug 53.9 5 0.00011 46.2 0.5 20 88-107 473-492 (893)
311 TIGR02746 TraC-F-type type-IV 53.7 5 0.00011 45.5 0.5 18 90-107 430-447 (797)
312 PRK11057 ATP-dependent DNA hel 53.7 9.7 0.00021 41.8 2.7 24 81-106 33-56 (607)
313 PRK06217 hypothetical protein; 53.4 6.2 0.00013 35.9 1.0 14 93-106 4-17 (183)
314 cd02020 CMPK Cytidine monophos 53.2 6.5 0.00014 33.8 1.0 14 93-106 2-15 (147)
315 PF06705 SF-assemblin: SF-asse 53.1 1.9E+02 0.0041 27.7 11.3 30 347-376 32-61 (247)
316 TIGR02397 dnaX_nterm DNA polym 52.8 13 0.00028 37.5 3.3 35 69-107 18-53 (355)
317 PRK14963 DNA polymerase III su 52.7 11 0.00023 40.5 2.8 36 69-107 18-53 (504)
318 PRK01172 ski2-like helicase; P 52.6 9.8 0.00021 42.3 2.6 21 84-106 33-53 (674)
319 PRK08233 hypothetical protein; 52.5 6.5 0.00014 35.3 1.0 16 92-107 5-20 (182)
320 TIGR02639 ClpA ATP-dependent C 52.2 13 0.00028 41.8 3.5 38 69-107 458-501 (731)
321 PF00485 PRK: Phosphoribulokin 51.9 5.8 0.00013 36.5 0.5 15 93-107 2-16 (194)
322 PRK14532 adenylate kinase; Pro 51.9 7.5 0.00016 35.4 1.3 15 92-106 2-16 (188)
323 KOG1029|consensus 51.9 3.6E+02 0.0078 30.5 13.8 25 351-375 488-512 (1118)
324 PRK11664 ATP-dependent RNA hel 51.8 11 0.00024 42.9 2.8 27 79-107 11-37 (812)
325 PHA01747 putative ATP-dependen 51.6 6.9 0.00015 40.0 1.0 29 79-107 179-207 (425)
326 TIGR02902 spore_lonB ATP-depen 51.6 13 0.00029 40.1 3.3 27 81-107 77-103 (531)
327 TIGR02030 BchI-ChlI magnesium 51.5 9.1 0.0002 38.8 1.9 38 68-109 7-44 (337)
328 cd01393 recA_like RecA is a b 51.5 11 0.00023 35.4 2.3 30 78-107 4-36 (226)
329 PRK13767 ATP-dependent helicas 51.4 8.5 0.00018 44.2 1.9 23 83-107 42-64 (876)
330 PF00931 NB-ARC: NB-ARC domain 51.4 17 0.00037 35.2 3.8 30 78-107 5-36 (287)
331 cd02023 UMPK Uridine monophosp 51.1 6 0.00013 36.4 0.5 15 93-107 2-16 (198)
332 KOG4657|consensus 50.8 1.6E+02 0.0034 28.0 9.6 14 439-452 139-152 (246)
333 PF04548 AIG1: AIG1 family; I 50.8 7.2 0.00016 36.6 1.0 16 92-107 2-17 (212)
334 PRK04040 adenylate kinase; Pro 50.8 7.1 0.00015 36.0 0.9 16 92-107 4-19 (188)
335 TIGR01360 aden_kin_iso1 adenyl 50.7 7.4 0.00016 35.1 1.1 16 92-107 5-20 (188)
336 PF13851 GAS: Growth-arrest sp 50.6 1.6E+02 0.0035 27.5 10.0 55 323-377 22-76 (201)
337 cd01983 Fer4_NifH The Fer4_Nif 50.4 7.1 0.00015 30.4 0.8 15 93-107 2-16 (99)
338 PTZ00110 helicase; Provisional 50.3 9.3 0.0002 41.4 1.9 24 82-107 161-184 (545)
339 cd02025 PanK Pantothenate kina 50.1 4.8 0.0001 38.1 -0.3 12 96-107 5-16 (220)
340 TIGR03117 cas_csf4 CRISPR-asso 50.0 12 0.00026 41.2 2.7 32 70-107 2-33 (636)
341 TIGR03881 KaiC_arch_4 KaiC dom 50.0 11 0.00025 35.4 2.3 29 79-107 6-37 (229)
342 KOG0745|consensus 49.9 7.8 0.00017 40.4 1.1 15 91-105 227-241 (564)
343 COG0467 RAD55 RecA-superfamily 49.9 12 0.00025 36.2 2.3 24 82-105 12-38 (260)
344 PRK13531 regulatory ATPase Rav 49.8 13 0.00028 39.6 2.7 27 79-107 30-56 (498)
345 PRK06762 hypothetical protein; 49.7 8.4 0.00018 34.2 1.2 14 92-105 4-17 (166)
346 PRK14970 DNA polymerase III su 49.7 15 0.00032 37.5 3.2 28 80-107 28-56 (367)
347 PF08477 Miro: Miro-like prote 49.6 8.8 0.00019 31.6 1.3 15 93-107 2-16 (119)
348 PF07693 KAP_NTPase: KAP famil 49.5 13 0.00029 36.8 2.7 20 88-107 18-37 (325)
349 TIGR00382 clpX endopeptidase C 49.4 8.1 0.00018 40.3 1.2 17 91-107 117-133 (413)
350 TIGR03345 VI_ClpV1 type VI sec 49.4 17 0.00037 41.6 3.9 38 69-107 570-613 (852)
351 PF10412 TrwB_AAD_bind: Type I 49.2 5.9 0.00013 40.9 0.2 16 92-107 17-32 (386)
352 PF01745 IPT: Isopentenyl tran 49.2 7.8 0.00017 36.7 0.9 15 93-107 4-18 (233)
353 KOG1547|consensus 49.1 21 0.00046 34.3 3.8 20 86-105 42-61 (336)
354 PF02534 T4SS-DNA_transf: Type 49.0 12 0.00025 39.6 2.4 18 91-108 45-62 (469)
355 PF14532 Sigma54_activ_2: Sigm 48.9 8.6 0.00019 33.2 1.1 21 87-107 18-38 (138)
356 TIGR03263 guanyl_kin guanylate 48.9 8.9 0.00019 34.5 1.3 16 92-107 3-18 (180)
357 PRK14729 miaA tRNA delta(2)-is 48.9 9.1 0.0002 38.1 1.4 15 92-106 6-20 (300)
358 TIGR02173 cyt_kin_arch cytidyl 48.6 8.3 0.00018 34.2 1.0 16 92-107 2-17 (171)
359 KOG0735|consensus 48.5 8.1 0.00017 42.6 1.0 20 88-107 699-718 (952)
360 PF15254 CCDC14: Coiled-coil d 48.3 2E+02 0.0044 32.3 11.4 44 319-369 364-407 (861)
361 PRK03839 putative kinase; Prov 48.2 8.3 0.00018 34.8 1.0 14 93-106 3-16 (180)
362 PF06745 KaiC: KaiC; InterPro 48.2 9.3 0.0002 35.9 1.3 26 80-105 6-34 (226)
363 TIGR01425 SRP54_euk signal rec 48.2 19 0.00042 37.7 3.8 18 90-107 100-117 (429)
364 TIGR03752 conj_TIGR03752 integ 48.1 2.3E+02 0.0049 30.1 11.4 30 402-431 91-120 (472)
365 PHA02774 E1; Provisional 47.9 13 0.00028 40.4 2.4 27 81-107 423-451 (613)
366 PRK14527 adenylate kinase; Pro 47.8 9.4 0.0002 35.0 1.3 17 91-107 7-23 (191)
367 COG2433 Uncharacterized conser 47.7 3.4E+02 0.0074 29.7 12.7 15 312-326 335-349 (652)
368 PRK04296 thymidine kinase; Pro 47.5 6.8 0.00015 36.1 0.3 19 91-109 3-21 (190)
369 PTZ00014 myosin-A; Provisional 47.4 18 0.0004 41.1 3.7 33 73-106 166-199 (821)
370 TIGR02236 recomb_radA DNA repa 47.4 16 0.00034 36.4 2.9 29 79-107 81-112 (310)
371 KOG4360|consensus 47.3 1.5E+02 0.0033 31.5 9.9 16 413-428 272-287 (596)
372 PRK00300 gmk guanylate kinase; 47.3 8.3 0.00018 35.5 0.8 18 90-107 5-22 (205)
373 COG3842 PotA ABC-type spermidi 47.3 7.5 0.00016 39.6 0.5 13 95-107 36-48 (352)
374 PF00158 Sigma54_activat: Sigm 47.2 10 0.00023 34.2 1.4 20 87-106 19-38 (168)
375 PRK12727 flagellar biosynthesi 47.0 8.2 0.00018 41.5 0.8 17 91-107 351-367 (559)
376 cd02027 APSK Adenosine 5'-phos 46.9 8.5 0.00018 33.9 0.8 14 93-106 2-15 (149)
377 COG3839 MalK ABC-type sugar tr 46.7 7.8 0.00017 39.2 0.6 15 93-107 32-46 (338)
378 KOG0741|consensus 46.7 10 0.00022 40.5 1.4 14 92-105 258-271 (744)
379 KOG4673|consensus 46.6 1.6E+02 0.0035 32.5 10.1 36 331-366 474-512 (961)
380 PRK14530 adenylate kinase; Pro 46.5 9.2 0.0002 35.8 1.0 15 92-106 5-19 (215)
381 PF10923 DUF2791: P-loop Domai 46.4 18 0.00039 37.7 3.2 38 69-107 29-66 (416)
382 TIGR01351 adk adenylate kinase 46.3 9.4 0.0002 35.6 1.0 14 93-106 2-15 (210)
383 PRK10078 ribose 1,5-bisphospho 46.2 8.7 0.00019 35.1 0.8 16 92-107 4-19 (186)
384 TIGR03880 KaiC_arch_3 KaiC dom 46.2 16 0.00034 34.3 2.6 26 81-106 4-32 (224)
385 TIGR00231 small_GTP small GTP- 46.2 8.1 0.00017 32.7 0.5 16 92-107 3-18 (161)
386 TIGR02012 tigrfam_recA protein 46.0 14 0.0003 37.3 2.2 30 77-106 38-71 (321)
387 TIGR00929 VirB4_CagE type IV s 46.0 8.3 0.00018 43.6 0.7 18 90-107 434-451 (785)
388 COG1136 SalX ABC-type antimicr 46.0 8.1 0.00018 36.8 0.5 15 93-107 34-48 (226)
389 PRK11131 ATP-dependent RNA hel 46.0 14 0.00031 43.9 2.6 24 83-107 83-106 (1294)
390 TIGR02768 TraA_Ti Ti-type conj 45.9 12 0.00026 42.1 2.0 28 81-109 360-387 (744)
391 cd03274 ABC_SMC4_euk Eukaryoti 45.9 8.9 0.00019 36.0 0.8 16 92-107 27-42 (212)
392 TIGR01650 PD_CobS cobaltochela 45.9 17 0.00036 36.7 2.8 27 79-107 55-81 (327)
393 PRK06851 hypothetical protein; 45.6 11 0.00025 38.6 1.6 27 81-107 21-47 (367)
394 PRK13889 conjugal transfer rel 45.6 13 0.00027 43.2 2.1 27 81-108 354-380 (988)
395 PLN03137 ATP-dependent DNA hel 45.5 14 0.00029 43.4 2.3 26 79-106 466-491 (1195)
396 KOG0330|consensus 45.4 13 0.00028 38.1 1.9 25 81-107 91-115 (476)
397 KOG1514|consensus 45.1 28 0.0006 38.5 4.4 52 282-339 570-630 (767)
398 KOG0977|consensus 45.0 2E+02 0.0044 31.1 10.7 19 350-368 114-132 (546)
399 cd00071 GMPK Guanosine monopho 45.0 11 0.00024 32.7 1.2 14 93-106 2-15 (137)
400 PRK06731 flhF flagellar biosyn 44.9 9.2 0.0002 37.5 0.7 17 91-107 76-92 (270)
401 TIGR00959 ffh signal recogniti 44.9 12 0.00025 39.4 1.5 18 90-107 99-116 (428)
402 PRK10689 transcription-repair 44.8 18 0.0004 42.8 3.3 38 65-106 600-637 (1147)
403 TIGR02238 recomb_DMC1 meiotic 44.7 16 0.00034 36.7 2.4 30 77-106 80-112 (313)
404 TIGR00390 hslU ATP-dependent p 44.6 10 0.00022 39.6 1.1 17 91-107 48-64 (441)
405 KOG0336|consensus 44.5 18 0.0004 37.3 2.8 20 85-106 254-273 (629)
406 PF10392 COG5: Golgi transport 44.4 2.1E+02 0.0045 24.6 10.6 107 323-450 7-115 (132)
407 PF14723 SSFA2_C: Sperm-specif 44.3 1.8E+02 0.004 26.4 8.7 23 406-428 149-171 (179)
408 TIGR01447 recD exodeoxyribonuc 44.3 13 0.00028 40.7 1.8 25 82-108 154-178 (586)
409 TIGR03817 DECH_helic helicase/ 44.3 16 0.00035 41.1 2.7 24 81-106 44-67 (742)
410 KOG2035|consensus 44.2 34 0.00074 33.8 4.4 38 79-129 22-60 (351)
411 TIGR00763 lon ATP-dependent pr 43.9 22 0.00048 40.3 3.7 39 69-107 324-364 (775)
412 cd02019 NK Nucleoside/nucleoti 43.8 13 0.00027 28.1 1.2 15 93-107 2-16 (69)
413 TIGR01074 rep ATP-dependent DN 43.8 10 0.00022 42.1 1.0 20 90-109 14-33 (664)
414 PRK00279 adk adenylate kinase; 43.8 11 0.00024 35.3 1.1 15 92-106 2-16 (215)
415 COG1122 CbiO ABC-type cobalt t 43.7 12 0.00025 36.0 1.2 16 92-107 32-47 (235)
416 cd03279 ABC_sbcCD SbcCD and ot 43.6 10 0.00022 35.4 0.8 18 90-107 28-45 (213)
417 PRK06645 DNA polymerase III su 43.4 21 0.00045 38.4 3.2 36 68-107 24-60 (507)
418 PRK15483 type III restriction- 43.3 16 0.00036 42.0 2.5 13 98-110 67-79 (986)
419 cd03115 SRP The signal recogni 43.2 10 0.00023 33.9 0.8 15 93-107 3-17 (173)
420 TIGR02655 circ_KaiC circadian 43.2 18 0.00038 38.6 2.6 27 79-105 7-36 (484)
421 PRK11784 tRNA 2-selenouridine 43.1 15 0.00032 37.5 1.9 34 74-108 126-159 (345)
422 PRK09302 circadian clock prote 43.0 17 0.00038 38.9 2.6 28 78-105 16-46 (509)
423 TIGR00235 udk uridine kinase. 42.9 12 0.00026 34.7 1.2 17 91-107 7-23 (207)
424 TIGR00678 holB DNA polymerase 42.9 17 0.00036 33.1 2.1 25 83-107 6-31 (188)
425 cd00983 recA RecA is a bacter 42.8 17 0.00036 36.7 2.2 31 76-106 37-71 (325)
426 TIGR01243 CDC48 AAA family ATP 42.7 12 0.00026 42.1 1.3 17 91-107 213-229 (733)
427 PLN03187 meiotic recombination 42.6 16 0.00035 37.1 2.2 29 77-105 110-141 (344)
428 CHL00176 ftsH cell division pr 42.5 9.7 0.00021 42.1 0.5 16 92-107 218-233 (638)
429 KOG0161|consensus 42.4 2.9E+02 0.0064 34.7 12.7 19 87-105 165-183 (1930)
430 PF11068 YlqD: YlqD protein; 42.3 2.3E+02 0.005 24.6 9.6 35 336-370 7-41 (131)
431 COG0563 Adk Adenylate kinase a 42.3 12 0.00026 34.2 1.1 13 93-105 3-15 (178)
432 cd03240 ABC_Rad50 The catalyti 42.3 11 0.00023 35.2 0.7 16 92-107 24-39 (204)
433 PRK09354 recA recombinase A; P 42.1 18 0.00039 36.8 2.4 31 77-107 43-77 (349)
434 COG0324 MiaA tRNA delta(2)-iso 42.0 14 0.0003 37.0 1.5 16 92-107 5-20 (308)
435 PF03195 DUF260: Protein of un 42.0 32 0.0007 28.4 3.4 78 284-368 20-97 (101)
436 PTZ00301 uridine kinase; Provi 41.9 9 0.00019 36.1 0.2 15 93-107 6-20 (210)
437 PF09439 SRPRB: Signal recogni 41.9 14 0.0003 34.0 1.4 15 91-105 4-18 (181)
438 TIGR03346 chaperone_ClpB ATP-d 41.8 24 0.00053 40.4 3.6 38 69-107 569-612 (852)
439 PRK13853 type IV secretion sys 41.8 9.3 0.0002 43.4 0.3 18 90-107 426-443 (789)
440 PRK13721 conjugal transfer ATP 41.8 10 0.00022 43.4 0.6 18 90-107 449-466 (844)
441 PF03193 DUF258: Protein of un 41.7 17 0.00037 32.7 1.9 26 80-107 27-52 (161)
442 TIGR03878 thermo_KaiC_2 KaiC d 41.7 14 0.00031 35.8 1.5 16 90-105 36-51 (259)
443 PRK04301 radA DNA repair and r 41.7 22 0.00048 35.5 2.9 29 79-107 88-119 (317)
444 KOG0987|consensus 41.7 26 0.00056 38.0 3.6 35 68-107 120-154 (540)
445 PRK02496 adk adenylate kinase; 41.6 12 0.00027 33.8 1.0 15 93-107 4-18 (184)
446 PRK00091 miaA tRNA delta(2)-is 41.5 13 0.00028 37.2 1.2 15 92-106 6-20 (307)
447 PLN02200 adenylate kinase fami 41.4 12 0.00027 35.7 1.1 16 91-106 44-59 (234)
448 PF00025 Arf: ADP-ribosylation 41.4 20 0.00044 32.2 2.4 28 80-107 3-31 (175)
449 PRK14528 adenylate kinase; Pro 41.3 13 0.00027 34.1 1.1 16 92-107 3-18 (186)
450 TIGR01243 CDC48 AAA family ATP 41.3 13 0.00027 41.9 1.2 17 91-107 488-504 (733)
451 PRK00409 recombination and DNA 41.3 2.8E+02 0.0061 31.6 11.9 11 97-107 214-224 (782)
452 PLN03230 acetyl-coenzyme A car 41.1 95 0.0021 32.4 7.3 40 325-364 56-95 (431)
453 PRK14956 DNA polymerase III su 41.1 25 0.00055 37.4 3.3 35 69-107 22-57 (484)
454 cd00227 CPT Chloramphenicol (C 41.0 13 0.00027 33.6 1.0 16 92-107 4-19 (175)
455 cd01853 Toc34_like Toc34-like 41.0 13 0.00027 36.0 1.0 37 68-107 12-48 (249)
456 TIGR01587 cas3_core CRISPR-ass 40.9 13 0.00028 37.5 1.2 14 93-106 2-15 (358)
457 PRK13873 conjugal transfer ATP 40.9 12 0.00026 42.7 1.0 16 92-107 443-458 (811)
458 TIGR02639 ClpA ATP-dependent C 40.9 16 0.00035 41.1 2.0 38 68-109 185-222 (731)
459 PF11559 ADIP: Afadin- and alp 40.8 1.7E+02 0.0037 25.6 8.3 12 250-261 4-15 (151)
460 COG1198 PriA Primosomal protei 40.7 21 0.00045 40.0 2.8 59 68-132 201-270 (730)
461 cd02028 UMPK_like Uridine mono 40.4 13 0.00028 33.9 1.0 15 93-107 2-16 (179)
462 PF14282 FlxA: FlxA-like prote 40.4 1.9E+02 0.0042 23.9 7.9 21 348-368 18-38 (106)
463 TIGR00174 miaA tRNA isopenteny 40.4 14 0.0003 36.6 1.2 14 93-106 2-15 (287)
464 PF04642 DUF601: Protein of un 40.3 2.3E+02 0.0049 27.4 9.1 13 325-337 162-174 (311)
465 TIGR00580 mfd transcription-re 40.3 24 0.00052 40.8 3.3 38 66-107 452-489 (926)
466 PRK08533 flagellar accessory p 40.0 15 0.00032 35.0 1.3 17 90-106 24-40 (230)
467 KOG0994|consensus 40.0 4.6E+02 0.01 31.2 12.7 19 350-368 1620-1638(1758)
468 PRK14964 DNA polymerase III su 40.0 25 0.00054 37.6 3.1 24 84-107 28-52 (491)
469 TIGR02759 TraD_Ftype type IV c 40.0 11 0.00024 41.0 0.5 16 92-107 178-193 (566)
470 PRK13891 conjugal transfer pro 39.9 12 0.00027 42.8 0.9 18 90-107 488-505 (852)
471 PHA02530 pseT polynucleotide k 39.9 14 0.00031 36.3 1.2 15 92-106 4-18 (300)
472 PRK11546 zraP zinc resistance 39.8 1.2E+02 0.0027 26.7 6.8 21 349-369 54-74 (143)
473 PF02841 GBP_C: Guanylate-bind 39.8 2.1E+02 0.0045 28.3 9.5 17 414-430 241-257 (297)
474 cd03272 ABC_SMC3_euk Eukaryoti 39.8 12 0.00027 35.4 0.8 16 92-107 25-40 (243)
475 PRK05416 glmZ(sRNA)-inactivati 39.7 11 0.00025 37.2 0.5 17 92-108 8-24 (288)
476 TIGR03574 selen_PSTK L-seryl-t 39.7 13 0.00029 35.6 0.9 15 93-107 2-16 (249)
477 PRK05201 hslU ATP-dependent pr 39.6 32 0.00069 36.1 3.7 17 90-106 50-66 (443)
478 PF11559 ADIP: Afadin- and alp 39.6 1.2E+02 0.0027 26.5 7.2 7 320-326 33-39 (151)
479 PRK01184 hypothetical protein; 39.5 14 0.0003 33.5 1.0 15 92-106 3-17 (184)
480 COG0464 SpoVK ATPases of the A 39.5 13 0.00027 39.7 0.9 20 88-107 274-293 (494)
481 PF10498 IFT57: Intra-flagella 39.5 2E+02 0.0044 29.5 9.4 28 102-135 57-84 (359)
482 PF01926 MMR_HSR1: 50S ribosom 39.3 11 0.00024 31.1 0.3 15 93-107 2-16 (116)
483 PRK11545 gntK gluconate kinase 39.2 8.7 0.00019 34.4 -0.4 12 96-107 1-12 (163)
484 PRK05541 adenylylsulfate kinas 39.1 15 0.00033 33.0 1.2 16 92-107 9-24 (176)
485 PRK13880 conjugal transfer cou 39.1 17 0.00038 40.1 1.8 18 91-108 176-193 (636)
486 TIGR01069 mutS2 MutS2 family p 39.0 3.5E+02 0.0077 30.8 12.2 11 97-107 209-219 (771)
487 PF01078 Mg_chelatase: Magnesi 39.0 24 0.00052 33.1 2.5 34 68-107 6-39 (206)
488 COG1137 YhbG ABC-type (unclass 38.9 16 0.00034 34.4 1.3 14 94-107 34-47 (243)
489 TIGR00176 mobB molybdopterin-g 38.8 12 0.00027 33.3 0.5 14 94-107 3-16 (155)
490 PRK09401 reverse gyrase; Revie 38.8 23 0.00049 42.1 2.8 24 80-105 87-110 (1176)
491 KOG0346|consensus 38.8 18 0.00039 37.7 1.8 24 81-106 49-72 (569)
492 PRK05973 replicative DNA helic 38.7 21 0.00045 34.3 2.1 25 82-106 54-80 (237)
493 KOG0344|consensus 38.5 19 0.00042 38.7 2.0 25 81-107 166-190 (593)
494 PRK05057 aroK shikimate kinase 38.5 16 0.00034 33.0 1.2 17 91-107 5-21 (172)
495 PRK05480 uridine/cytidine kina 38.4 15 0.00032 34.1 1.0 17 91-107 7-23 (209)
496 PF12128 DUF3584: Protein of u 38.3 4.7E+02 0.01 31.4 13.7 21 347-367 769-789 (1201)
497 TIGR03783 Bac_Flav_CT_G Bacter 38.2 12 0.00026 42.7 0.4 19 89-107 437-455 (829)
498 PRK13949 shikimate kinase; Pro 37.9 15 0.00034 33.0 1.0 16 92-107 3-18 (169)
499 TIGR01970 DEAH_box_HrpB ATP-de 37.9 26 0.00055 40.0 3.0 18 90-107 17-34 (819)
500 TIGR02858 spore_III_AA stage I 37.8 24 0.00052 34.6 2.4 31 77-107 97-128 (270)
No 1
>KOG0245|consensus
Probab=100.00 E-value=2.3e-101 Score=812.31 Aligned_cols=358 Identities=73% Similarity=1.076 Sum_probs=334.1
Q ss_pred CCCcEEEEEcCCCCccccccCCceEEEEcCCeEEEECCCCCCCCCCCCceeecceeecCCCCCCCCCCCHHHHHHHHHHH
Q psy7270 1 MSSVKVAVRVRPFNNREISRDCKSIIEMTGNTTVIINPKLPPESKDTHKNFNFDYSYYSHDPSASNFATQAMVYSDIGEE 80 (459)
Q Consensus 1 m~~vkV~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~f~FD~vf~~~d~~~~~~~sQ~~vy~~~~~p 80 (459)
+++|+|+|||||++.+|....+.+|+.+.++.+.++++..+. + ...|+||+.||+||+.++.+|+|..||+.++.|
T Consensus 3 ~ssv~VAVRVRPfn~rE~s~~~k~Vvqm~gn~ttii~~~~~k---~-~~~FtfD~SYWS~d~edPhfAsQ~qVYedlg~~ 78 (1221)
T KOG0245|consen 3 GSSVKVAVRVRPFNAREKSRDAKCVVQMQGNTTTIINPKGSK---D-APKFTFDYSYWSHDSEDPHFASQKQVYEDLGRE 78 (1221)
T ss_pred CCceEEEEEeccchhhhhhcccceEEEecCCceeeecCCCcc---c-CCceecceeeecCCCCCCchhhHHHHHHHHhHH
Confidence 478999999999999999999999999999999999876542 2 334999999999999999999999999999999
Q ss_pred HHHHhhcCCceEEEeecCCCCCcceeeccCCCCCCCCChHHHHHHHHHHHHhhccCCcceec------------------
Q psy7270 81 MLEHAFEGYNVCIFAYGQTGAGKSYTMMGRQEVEGEEGIIPMICQDLFKRIKDTTNDKLKSR------------------ 142 (459)
Q Consensus 81 lv~~~l~G~n~ti~aYGqTgSGKT~Tm~G~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~~------------------ 142 (459)
+++.+|+|||+||||||||||||||||+|.+. ++.+|||||+|++||.+|.+.....+.|.
T Consensus 79 mL~~AfEGYN~ClFAYGQTGSGKSYTMMG~~~-~~e~GIIPrlCEeLF~ri~~nq~~~~sy~VevSymEIYcErVrDLL~ 157 (1221)
T KOG0245|consen 79 MLDHAFEGYNVCLFAYGQTGSGKSYTMMGFQE-PDEPGIIPRLCEELFSRIADNQSQQMSYSVEVSYMEIYCERVRDLLN 157 (1221)
T ss_pred HHHHHhcccceEEEEeccCCCCcceeeeccCC-CCCCCchhHHHHHHHHHHhhcccccceEEEEEeehhHHHHHHHHHhh
Confidence 99999999999999999999999999999873 46799999999999999998776665543
Q ss_pred --ccCCcceEeeeCCCCceecCCccccccCHHHHHHHHHHHhhccccccccCCCCCCCceEEEEEEEEEeeecCCCCccc
Q psy7270 143 --WKNSNLRVREHPLLGPYVEDLSKLAVTCYRDIHDLIDEGNKARTVAATNMNETSSRSHAVFTIFFTQQAVDDMTDLTT 220 (459)
Q Consensus 143 --~~~~~l~i~e~~~~g~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~~~~ 220 (459)
...++|++||+|..|+||++|+.+.|+|+.|+..++..|++.|.+++|.||+.|||||+||+|.+.|...+...+..+
T Consensus 158 ~p~~kg~LRVREHP~lGPYVedLS~~aV~Sy~dI~~~md~GNkqRTtAATnMNdtSSRSHaVFtIvftQk~~~~~~~l~s 237 (1221)
T KOG0245|consen 158 APKSKGGLRVREHPILGPYVEDLSKLAVTSYADIQDLMDEGNKQRTTAATNMNDTSSRSHAVFTIVFTQKKHDQDTGLDS 237 (1221)
T ss_pred CCCCCCCceeeccCccChhHhHhhhcccccHHHHHHHHHhcchhhhhhhhccccccccceeEEEEEEEeeeccccCCCcc
Confidence 356789999999999999999999999999999999999999999999999999999999999999998888777788
Q ss_pred eeEeceeeeccCCCccccCCCCcccchhhhhhhhHhHHHHHHHHHHHHhhhhhhhhhhhcCCCCCccCCCCcchhhhhhc
Q psy7270 221 EKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEISAVQHVAKKKKKADFIPYRDSVLTWLLREN 300 (459)
Q Consensus 221 ~~~s~L~~VDLAGsEr~~~~~~~g~r~~E~~~IN~SL~~L~~vI~aL~~~~~~~~~~~~~~~~~~ipyRdSkLT~lL~ds 300 (459)
.++|||+|||||||||++.+++.|+|++||++|||||.+||+||.||++..+ .++++..+||||||-||+||+++
T Consensus 238 ek~SKIsLVDLAGSERasstGa~G~RLKEGa~INKSLtTLGkVISALAe~~~-----~k~~ks~fIPYRDSVLTWLLkEn 312 (1221)
T KOG0245|consen 238 EKVSKISLVDLAGSERASSTGANGDRLKEGANINKSLTTLGKVISALAESQK-----GKKKKSDFIPYRDSVLTWLLKEN 312 (1221)
T ss_pred eeeeeeeEEeccCcccccccCCCccchhcccccchHHHHHHHHHHHHHHHhc-----cCCCCCccccchHHHHHHHHHHh
Confidence 8999999999999999999999999999999999999999999999998643 34567779999999999999999
Q ss_pred cCCCcceeeeeccCCCCCCHHHHHHHHHHHHHhhcccccceecccchHHHHHHHHHHHHHHHHHHHhh
Q psy7270 301 LGGNSKTAMIAAISPADINYDETLSTLRYADRAKQIVCKAIVNEDANAKLIRELKEEIQRLRDLLKQE 368 (459)
Q Consensus 301 LgGns~t~~I~~isp~~~~~~eTlsTL~fa~rak~I~n~~~~n~~~~~~~i~~l~~ei~~L~~~l~~~ 368 (459)
|||||||+|||+|||++.||+|||+|||||.|||.|+|+++||+|+++++|++|++||.+||..|...
T Consensus 313 LGGNSKTaMIAAlSPAdiNyeETLSTLRYAdRAK~Iv~~avVNEdpnaKLIRELreEv~rLksll~~~ 380 (1221)
T KOG0245|consen 313 LGGNSKTAMIAALSPADINYEETLSTLRYADRAKQIVNNAVVNEDPNAKLIRELREEVARLKSLLRAQ 380 (1221)
T ss_pred cCCcchhhhhhccChhhcChHHHHHHHHHhhHhhhhhccceeCCCccHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999887543
No 2
>KOG4280|consensus
Probab=100.00 E-value=2e-91 Score=722.30 Aligned_cols=343 Identities=47% Similarity=0.682 Sum_probs=305.9
Q ss_pred CcEEEEEcCCCCccccccCCceEEEEcCCeEE--EECCCCCCCCCCCCceeecceeecCCCCCCCCCCCHHHHHHHHHHH
Q psy7270 3 SVKVAVRVRPFNNREISRDCKSIIEMTGNTTV--IINPKLPPESKDTHKNFNFDYSYYSHDPSASNFATQAMVYSDIGEE 80 (459)
Q Consensus 3 ~vkV~vRvRP~~~~E~~~~~~~~v~~~~~~~~--~~~~~~~~~~~~~~~~f~FD~vf~~~d~~~~~~~sQ~~vy~~~~~p 80 (459)
+|+|+|||||++..+.......++.++..... +.++.. .....++.|+||.||++. ++|++||..++.|
T Consensus 6 ~v~vvvr~rPl~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~ftfD~vf~~~-------stQ~dvy~~~~~~ 76 (574)
T KOG4280|consen 6 KVKVVVRVRPLSAAERSELLKSILSVDPAHGRVSLKNPVA--GIEGKPKSFTFDAVFDSD-------STQDDVYQETVAP 76 (574)
T ss_pred ceeEEEeecCCCchhhhhhhccccccccccceeeecCCcc--cccCCCCCceeeeeecCC-------CCHHHHHHHHhHH
Confidence 68999999999999988888888777654443 333332 223446789999999765 8999999999999
Q ss_pred HHHHhhcCCceEEEeecCCCCCcceeeccCCCCCCCCChHHHHHHHHHHHHhhccCCc-----cee----------c---
Q psy7270 81 MLEHAFEGYNVCIFAYGQTGAGKSYTMMGRQEVEGEEGIIPMICQDLFKRIKDTTNDK-----LKS----------R--- 142 (459)
Q Consensus 81 lv~~~l~G~n~ti~aYGqTgSGKT~Tm~G~~~~~~~~Giipr~~~~lF~~i~~~~~~~-----~~~----------~--- 142 (459)
+|++|++|||+||||||||||||||||.|++ +...|||||++++||.+|.+..... ++| +
T Consensus 77 lV~svl~GyNgtvFaYGQTGsGKTyTM~G~~--~~~~GiiPraf~~LF~~I~~~~~~~~f~vrvS~lEiYnE~i~DLL~~ 154 (574)
T KOG4280|consen 77 LVESVLEGYNGTVFAYGQTGSGKTYTMIGPD--PELRGLIPRAFEHLFRHIDERKEKTRFLVRVSYLEIYNESIRDLLSP 154 (574)
T ss_pred HHHHHhcccCceEEEeccCCCCCceEeeCCC--hhhCCchhHHHHHHHHHHHhccccceEEEEeehHHHHhHHHHHHhCc
Confidence 9999999999999999999999999999993 6789999999999999999875432 111 1
Q ss_pred ccCCcceEeeeCCCCceecCCccccccCHHHHHHHHHHHhhccccccccCCCCCCCceEEEEEEEEEeeecCCCCcccee
Q psy7270 143 WKNSNLRVREHPLLGPYVEDLSKLAVTCYRDIHDLIDEGNKARTVAATNMNETSSRSHAVFTIFFTQQAVDDMTDLTTEK 222 (459)
Q Consensus 143 ~~~~~l~i~e~~~~g~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~~~~~~ 222 (459)
.....+.++++|..|+||+||+++.|.++++++.+|..|.++|++++|.||..|||||+||+|+|++.. ....+....+
T Consensus 155 ~~~~~l~lre~p~~Gv~V~nlse~~v~s~~d~~~~l~~G~~nR~vgat~mn~~SsRSH~ift~~i~~~~-~~~~~~~~~~ 233 (574)
T KOG4280|consen 155 VNPKGLELREDPKCGVYVENLSEMDVESAEDAQQLLVVGLANRRVGATSMNEESSRSHAIFTIHIESSE-KSDGGLMSGR 233 (574)
T ss_pred cCcCCceeeEcCCCceEecCcceeecCCHHHHHHHHHHHHhhcchhhccCCcccccceEEEEEEEEeec-ccCCCccccc
Confidence 223689999999999999999999999999999999999999999999999999999999999999932 2223445677
Q ss_pred EeceeeeccCCCccccCCCCcccchhhhhhhhHhHHHHHHHHHHHHhhhhhhhhhhhcCCCCCccCCCCcchhhhhhccC
Q psy7270 223 VSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEISAVQHVAKKKKKADFIPYRDSVLTWLLRENLG 302 (459)
Q Consensus 223 ~s~L~~VDLAGsEr~~~~~~~g~r~~E~~~IN~SL~~L~~vI~aL~~~~~~~~~~~~~~~~~~ipyRdSkLT~lL~dsLg 302 (459)
.|+|+|||||||||..++++.|.|++|+.+||+||++||+||.+|++. +..||||||||||+|||||||
T Consensus 234 ~~rlnlvDLagsEr~~~tga~G~rlkEa~~IN~SLs~LG~vI~aLvd~-----------~~~HIPYRdSkLT~LLqdSLG 302 (574)
T KOG4280|consen 234 SSKLNLVDLAGSERQSKTGAEGERLKEATNINLSLSALGNVISALVDG-----------SKTHIPYRDSKLTRLLQDSLG 302 (574)
T ss_pred cceeeeeeccchhhhcccCccchhhhhhcccchhHHHHHHHHHHHhcc-----------ccCCCCcchhHHHHHHHHHcC
Confidence 899999999999999999999999999999999999999999999984 444999999999999999999
Q ss_pred CCcceeeeeccCCCCCCHHHHHHHHHHHHHhhcccccceecccchHHHHHHHHHHHHHHHHHHHhh
Q psy7270 303 GNSKTAMIAAISPADINYDETLSTLRYADRAKQIVCKAIVNEDANAKLIRELKEEIQRLRDLLKQE 368 (459)
Q Consensus 303 Gns~t~~I~~isp~~~~~~eTlsTL~fa~rak~I~n~~~~n~~~~~~~i~~l~~ei~~L~~~l~~~ 368 (459)
|||+|+|||||+|+..+++||++||+||+|||.|+|+|++|+++.+.++++|++||+.|+.+|...
T Consensus 303 GN~kT~mianvsp~~~~~~ETlsTLrfA~Rak~I~nk~~ined~~~~~~~~lq~ei~~Lk~~l~~~ 368 (574)
T KOG4280|consen 303 GNSKTTMIANVSPSSDNYEETLSTLRFAQRAKAIKNKPVINEDPKDALLRELQEEIERLKKELDPG 368 (574)
T ss_pred CCceEEEEEecCchhhhhHHHHHHHHHHHHHHHhhccccccCCcchhhHHHHHHHHHHHHHhhccc
Confidence 999999999999999999999999999999999999999999999999999999999999999764
No 3
>KOG0243|consensus
Probab=100.00 E-value=9.1e-88 Score=722.15 Aligned_cols=344 Identities=40% Similarity=0.620 Sum_probs=300.7
Q ss_pred CCcEEEEEcCCCCccccccCCceEEEEcC-CeEEEECCCCCCCCCCCCceeecceeecCCCCCCCCCCCHHHHHHHHHHH
Q psy7270 2 SSVKVAVRVRPFNNREISRDCKSIIEMTG-NTTVIINPKLPPESKDTHKNFNFDYSYYSHDPSASNFATQAMVYSDIGEE 80 (459)
Q Consensus 2 ~~vkV~vRvRP~~~~E~~~~~~~~v~~~~-~~~~~~~~~~~~~~~~~~~~f~FD~vf~~~d~~~~~~~sQ~~vy~~~~~p 80 (459)
.+|+|+|||||++.+|....+..+|.+++ .+-+.+....+ ++...+.|+||.||++. +.|.+||+.++.|
T Consensus 49 ~NIqVivRcRp~n~~E~~~~s~~VVs~~~~~kEV~v~~~~~--sk~~~k~ftFDkVFGpe-------s~Q~d~Y~~~v~p 119 (1041)
T KOG0243|consen 49 VNIQVIVRCRPRNDRERKSKSSVVVSCDGIRKEVAVRQTIA--SKQIDKTFTFDKVFGPE-------SQQEDLYDQAVSP 119 (1041)
T ss_pred CceEEEEEeCCCCchhhhcCCCeEEecCCCcceEEEecccc--cccccceeecceeeCcc-------hhHHHHHHHHHHH
Confidence 48999999999999999999999999988 44344444322 23357899999999775 8999999999999
Q ss_pred HHHHhhcCCceEEEeecCCCCCcceeeccCC-----CCCCCCChHHHHHHHHHHHHhhccCCc---ceec----------
Q psy7270 81 MLEHAFEGYNVCIFAYGQTGAGKSYTMMGRQ-----EVEGEEGIIPMICQDLFKRIKDTTNDK---LKSR---------- 142 (459)
Q Consensus 81 lv~~~l~G~n~ti~aYGqTgSGKT~Tm~G~~-----~~~~~~Giipr~~~~lF~~i~~~~~~~---~~~~---------- 142 (459)
+|..|+.|||||||||||||+||||||+|.. ..+.+.|||||++.+||+.+.....+. ++|.
T Consensus 120 ~i~eVl~GyNCTIFAYGQTGTGKTyTMeG~~~~~~g~l~~~aGIIPRal~~IFd~Le~~~~EYsvKVSfLELYNEEl~DL 199 (1041)
T KOG0243|consen 120 IIKEVLEGYNCTIFAYGQTGTGKTYTMEGGERKKNGELPSEAGIIPRALRQIFDTLEAQGAEYSVKVSFLELYNEELTDL 199 (1041)
T ss_pred HHHHHhccCCceEEEecCCCCCceeeeecCcccccCCCCccCCcchHHHHHHHHHHHhcCCeEEEEEEehhhhhHHHHHh
Confidence 9999999999999999999999999999953 245679999999999999998665321 1111
Q ss_pred -----ccCCcceEeeeC-----CCCceecCCccccccCHHHHHHHHHHHhhccccccccCCCCCCCceEEEEEEEEEeee
Q psy7270 143 -----WKNSNLRVREHP-----LLGPYVEDLSKLAVTCYRDIHDLIDEGNKARTVAATNMNETSSRSHAVFTIFFTQQAV 212 (459)
Q Consensus 143 -----~~~~~l~i~e~~-----~~g~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~ 212 (459)
.....+++..++ .+|++|.||.++.|+++.|++.+|..|...|++++|.||..|||||+||+|+|+....
T Consensus 200 La~~~~~~~~~~~k~~~~~~~~kggV~vkGlEEi~V~~A~ei~klLekGs~kRrtAaTl~N~~SSRSHsIFsItvhike~ 279 (1041)
T KOG0243|consen 200 LASEDTSDKKLRIKDDSTIVDGKGGVIVKGLEEIIVTNADEIYKLLEKGSKKRRTAATLMNDQSSRSHSIFSITVHIKEN 279 (1041)
T ss_pred cCCccccccccccccCCcccCCcCcEEEecceeeeecchhHHHHHHHhhhhHhHHHHHHhhhhccccceEEEEEEEEecC
Confidence 111344555544 6899999999999999999999999999999999999999999999999999987654
Q ss_pred cCCCCccceeEeceeeeccCCCccccCCCCcccchhhhhhhhHhHHHHHHHHHHHHhhhhhhhhhhhcCCCCCccCCCCc
Q psy7270 213 DDMTDLTTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEISAVQHVAKKKKKADFIPYRDSV 292 (459)
Q Consensus 213 ~~~~~~~~~~~s~L~~VDLAGsEr~~~~~~~g~r~~E~~~IN~SL~~L~~vI~aL~~~~~~~~~~~~~~~~~~ipyRdSk 292 (459)
.. .+..-.+.|||+||||||||..++.|+.+.|.+|++.||+||++||+||+||.+ +..|||||+||
T Consensus 280 t~-~geelvK~GKLNLVDLAGSENI~RSGA~~~RArEAG~INqSLLTLGRVInALVe------------~s~HIPYRESK 346 (1041)
T KOG0243|consen 280 TP-EGEELVKIGKLNLVDLAGSENISRSGARNGRAREAGEINQSLLTLGRVINALVE------------HSGHIPYRESK 346 (1041)
T ss_pred CC-cchhhHhhcccceeeccccccccccccccchhHHhhhhhHHHHHHHHHHHHHHc------------cCCCCCchHHH
Confidence 33 233456789999999999999999999999999999999999999999999998 78899999999
Q ss_pred chhhhhhccCCCcceeeeeccCCCCCCHHHHHHHHHHHHHhhcccccceeccc-chHHHHHHHHHHHHHHHHHHHh
Q psy7270 293 LTWLLRENLGGNSKTAMIAAISPADINYDETLSTLRYADRAKQIVCKAIVNED-ANAKLIRELKEEIQRLRDLLKQ 367 (459)
Q Consensus 293 LT~lL~dsLgGns~t~~I~~isp~~~~~~eTlsTL~fa~rak~I~n~~~~n~~-~~~~~i~~l~~ei~~L~~~l~~ 367 (459)
|||||||||||.++|+|||||||+..+++||++||.||.|||+|+|+|.+|.. ....++++|-.||++||..|..
T Consensus 347 LTRLLQDSLGGkTKT~iIATiSPa~~~lEETlSTLEYA~RAKnIkNKPevNQkl~K~~llKd~~~EIerLK~dl~A 422 (1041)
T KOG0243|consen 347 LTRLLQDSLGGKTKTCIIATISPAKHNLEETLSTLEYAHRAKNIKNKPEVNQKLMKKTLLKDLYEEIERLKRDLAA 422 (1041)
T ss_pred HHHHHHHHhCCCceeEEEEEeCCCcccHHHHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999975 4677999999999999999864
No 4
>KOG0241|consensus
Probab=100.00 E-value=2e-85 Score=680.78 Aligned_cols=357 Identities=59% Similarity=0.912 Sum_probs=329.6
Q ss_pred CCcEEEEEcCCCCccccccCCceEEEEcCCeEEEECCCCCC--CCCCCCceeecceeecCCCCCCCCCCCHHHHHHHHHH
Q psy7270 2 SSVKVAVRVRPFNNREISRDCKSIIEMTGNTTVIINPKLPP--ESKDTHKNFNFDYSYYSHDPSASNFATQAMVYSDIGE 79 (459)
Q Consensus 2 ~~vkV~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~~~~--~~~~~~~~f~FD~vf~~~d~~~~~~~sQ~~vy~~~~~ 79 (459)
++|||+|||||++.+|+.....|++.++.+++++..+.... ....++++|.||++||+-|+..-.+++|+.||+.++.
T Consensus 4 ~kVkVaVRVRP~nrREl~l~tk~vv~vd~~q~vl~~~pp~~~~~~~k~pktFAFDhcF~s~dpes~n~agQE~Vf~~lG~ 83 (1714)
T KOG0241|consen 4 AKVKVAVRVRPMNRRELELSTKCVVEVDKNQTVLHPPPPNHKIGESKGPKTFAFDHCFWSMDPESKNYAGQETVFKCLGE 83 (1714)
T ss_pred cceEEEEEecccchhhhcccccceEEeccCceeecCCCccccccccCCCceeecccccccCCccccccccchhHHHhcch
Confidence 57999999999999999999999999999998887653221 2235789999999999999998999999999999999
Q ss_pred HHHHHhhcCCceEEEeecCCCCCcceeeccCCCCCCCCChHHHHHHHHHHHHhhccCCcceec-----------------
Q psy7270 80 EMLEHAFEGYNVCIFAYGQTGAGKSYTMMGRQEVEGEEGIIPMICQDLFKRIKDTTNDKLKSR----------------- 142 (459)
Q Consensus 80 plv~~~l~G~n~ti~aYGqTgSGKT~Tm~G~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~~----------------- 142 (459)
-+|+++|+|||+||||||||||||||||+|..+ .+|||||+|..||.+|.........+.
T Consensus 84 ~il~naf~GyNaCifaYGQtGsGKsYsmmGt~~---QpGiIPrlc~~lFe~I~k~~n~~~tfkVeVSymEIynEkv~DLL 160 (1714)
T KOG0241|consen 84 GILENAFQGYNACIFAYGQTGSGKSYSMMGTAE---QPGIIPRLCESLFERIDKESNPSQTFKVEVSYMEIYNEKVRDLL 160 (1714)
T ss_pred HHHHHHhhccceeeEEecccCCCceeEeeccCC---CCCchhHHHHHHHHHHHhccCCCceEEEEEEHHHHhhcchhhhh
Confidence 999999999999999999999999999999865 599999999999999987665432221
Q ss_pred ---ccCCcceEeeeCCCCceecCCccccccCHHHHHHHHHHHhhccccccccCCCCCCCceEEEEEEEEEeeecCCCCcc
Q psy7270 143 ---WKNSNLRVREHPLLGPYVEDLSKLAVTCYRDIHDLIDEGNKARTVAATNMNETSSRSHAVFTIFFTQQAVDDMTDLT 219 (459)
Q Consensus 143 ---~~~~~l~i~e~~~~g~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~~~ 219 (459)
.....+.+++|...|+||.||++..|+|++|+-.++..|+++|.+++|.||..|||||++|.|.|.|.-.+..++..
T Consensus 161 dPk~ssqtlkVrehsvlGp~vdGLS~laV~S~qdId~lm~egnKsrtvaatnmn~EssrsHaVFslvvtQ~l~D~ktg~S 240 (1714)
T KOG0241|consen 161 DPKGSSQTLKVREHSVLGPYVDGLSQLAVTSFQDIDSLMSEGNKSRTVAATNMNEESSRSHAVFSLVVTQTLYDLKTGHS 240 (1714)
T ss_pred CCCCCcceeEEeecccccccccchhhhhcccHHHHHHHHHhccccceeeeecccccccccceeEEEEEeeEEeccccCcc
Confidence 34567899999999999999999999999999999999999999999999999999999999999999888878888
Q ss_pred ceeEeceeeeccCCCccccCCCCcccchhhhhhhhHhHHHHHHHHHHHHhhhhhhhhhhhcCCCCCccCCCCcchhhhhh
Q psy7270 220 TEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEISAVQHVAKKKKKADFIPYRDSVLTWLLRE 299 (459)
Q Consensus 220 ~~~~s~L~~VDLAGsEr~~~~~~~g~r~~E~~~IN~SL~~L~~vI~aL~~~~~~~~~~~~~~~~~~ipyRdSkLT~lL~d 299 (459)
..++|||.|||||||||..++++.|.|++||.+||+||.+||.||.+|++... .+++..+||||||-||+||+|
T Consensus 241 geKvsklslVDLAgserasktga~g~rlkegsNinkSLttLglVIsaLadq~n------~kgkdKfvPYrDSVLTwLLkD 314 (1714)
T KOG0241|consen 241 GEKVSKLSLVDLAGSERASKTGAAGSRLKEGSNINKSLTTLGLVISALADQKN------GKGKDKFVPYRDSVLTWLLKD 314 (1714)
T ss_pred hhheeeeeEEEeccccccccccchhhhhhhcCCcchhhHHHHHHHHHHHHhhc------CCCccccccchhHHHHHHHHh
Confidence 88899999999999999999999999999999999999999999999998533 345678999999999999999
Q ss_pred ccCCCcceeeeeccCCCCCCHHHHHHHHHHHHHhhcccccceecccchHHHHHHHHHHHHHHHHHHHh
Q psy7270 300 NLGGNSKTAMIAAISPADINYDETLSTLRYADRAKQIVCKAIVNEDANAKLIRELKEEIQRLRDLLKQ 367 (459)
Q Consensus 300 sLgGns~t~~I~~isp~~~~~~eTlsTL~fa~rak~I~n~~~~n~~~~~~~i~~l~~ei~~L~~~l~~ 367 (459)
+|||||+|+||+||||+.++|+||++|||||.|||+|+|.+++|+++....|++|++|++.|+.+|.+
T Consensus 315 ~LGGNsrTvMiatvSPaAdnyeeTlStLRYadrAkrIvN~avvNedpnarvirElReEve~lr~qL~~ 382 (1714)
T KOG0241|consen 315 NLGGNSRTVMIATVSPAADNYEETLSTLRYADRAKRIVNHAVVNEDPNARVIRELREEVEKLREQLEQ 382 (1714)
T ss_pred hcCCCceeEEEEEecccccchHHHHHHHHHHHHHHHhhccccccCCchHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999976
No 5
>KOG0240|consensus
Probab=100.00 E-value=2e-82 Score=638.99 Aligned_cols=320 Identities=43% Similarity=0.615 Sum_probs=287.3
Q ss_pred CCCcEEEEEcCCCCccccccCCceEEEEcC-CeEEEECCCCCCCCCCCCceeecceeecCCCCCCCCCCCHHHHHHHHHH
Q psy7270 1 MSSVKVAVRVRPFNNREISRDCKSIIEMTG-NTTVIINPKLPPESKDTHKNFNFDYSYYSHDPSASNFATQAMVYSDIGE 79 (459)
Q Consensus 1 m~~vkV~vRvRP~~~~E~~~~~~~~v~~~~-~~~~~~~~~~~~~~~~~~~~f~FD~vf~~~d~~~~~~~sQ~~vy~~~~~ 79 (459)
|.+|+|+||+||++..|...+...+..+.+ ...+++... .+.++|.||.||.+. +||++||..++.
T Consensus 6 ~~~IkV~cR~rP~n~~E~~~~~~~i~~~~~~~~~v~~~~~------~~~~~y~FDrVF~pn-------atQe~Vy~~~a~ 72 (607)
T KOG0240|consen 6 ECSIKVVCRFRPLNGLENNLGSKFIDCFENGENTVVLETT------KETKTYVFDRVFSPN-------ATQEDVYEFAAK 72 (607)
T ss_pred CCceEEEEEeecCCchhhhcCCcCccCCCCCcceEEEecc------cccccceeeeecCCC-------ccHHHHHHHHHH
Confidence 679999999999999998888777766655 334443221 234789999999765 999999999999
Q ss_pred HHHHHhhcCCceEEEeecCCCCCcceeeccCCCCCCCCChHHHHHHHHHHHHhhccCC-----cceec------------
Q psy7270 80 EMLEHAFEGYNVCIFAYGQTGAGKSYTMMGRQEVEGEEGIIPMICQDLFKRIKDTTND-----KLKSR------------ 142 (459)
Q Consensus 80 plv~~~l~G~n~ti~aYGqTgSGKT~Tm~G~~~~~~~~Giipr~~~~lF~~i~~~~~~-----~~~~~------------ 142 (459)
|+|++||.|||+||||||||||||||||.|...++...|||||++++||++|...... .++|.
T Consensus 73 ~Iv~dVL~GYNGTvfaYGqT~sGKTytm~G~~~d~~~~GIipRi~~diF~~Iys~~~n~efhVkVsy~EIYmEKi~DLL~ 152 (607)
T KOG0240|consen 73 PIVDDVLLGYNGTVFAYGQTGSGKTYTMEGIGHDPEEMGIIPRILNDIFDHIYSMEENLEFHVKVSYFEIYMEKIRDLLD 152 (607)
T ss_pred HHHHHHhcccceeEEEecCCCCCcceeecccCCChhhcCcHHHHHHHHHHHHhcCcccceEEEEEEeehhhhhHHHHHhC
Confidence 9999999999999999999999999999999887777899999999999999876542 12221
Q ss_pred ccCCcceEeeeCCCCceecCCccccccCHHHHHHHHHHHhhccccccccCCCCCCCceEEEEEEEEEeeecCCCCcccee
Q psy7270 143 WKNSNLRVREHPLLGPYVEDLSKLAVTCYRDIHDLIDEGNKARTVAATNMNETSSRSHAVFTIFFTQQAVDDMTDLTTEK 222 (459)
Q Consensus 143 ~~~~~l~i~e~~~~g~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~~~~~~ 222 (459)
+...++.+++|...+++|+|+++..|.++++++++++.|..+|+++.|.||.+|||||+||+|+|.|..... ...+
T Consensus 153 ~~k~nlsvheDK~~v~~vkG~t~~~v~s~d~v~~~i~~g~~nr~va~t~mn~~sSRSHsIF~i~VkQ~n~e~----~~~~ 228 (607)
T KOG0240|consen 153 PEKTNLSVHEDKNRVPYVKGVTERFVSSPDEVLDVIDEGKSNRHVAVTNMNEHSSRSHSIFLIHVKQENVED----KRKL 228 (607)
T ss_pred cccCCceeecccCCCceecCceeEEecCHHHHHHHHhcccccchhhhccccccccccceEEEEEEEeccccc----hhhc
Confidence 567789999999999999999999999999999999999999999999999999999999999999986554 3456
Q ss_pred EeceeeeccCCCccccCCCCcccchhhhhhhhHhHHHHHHHHHHHHhhhhhhhhhhhcCCCCCccCCCCcchhhhhhccC
Q psy7270 223 VSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEISAVQHVAKKKKKADFIPYRDSVLTWLLRENLG 302 (459)
Q Consensus 223 ~s~L~~VDLAGsEr~~~~~~~g~r~~E~~~IN~SL~~L~~vI~aL~~~~~~~~~~~~~~~~~~ipyRdSkLT~lL~dsLg 302 (459)
.|+|.||||||||+++++|+.|.-+.|+++||+||.+||+||+||+++ +..|||||||||||||+||||
T Consensus 229 ~gkLyLVDLaGSEkvsKtga~g~vleEaK~INkSLsaLgnvI~aLa~g-----------~~shipYRDSKLTRILqdSLG 297 (607)
T KOG0240|consen 229 SGKLYLVDLAGSEKVSKTGAEGAVLEEAKNINKSLSALGNVINALAEG-----------PKSHIPYRDSKLTRILQDSLG 297 (607)
T ss_pred cccEEEEEcccccccCCCCccchhHHHHhhhhhhHHHHHHHHHHHhcC-----------CCCCCcchhhHHHHHHHHHhC
Confidence 799999999999999999999999999999999999999999999984 689999999999999999999
Q ss_pred CCcceeeeeccCCCCCCHHHHHHHHHHHHHhhcccccceecccchH
Q psy7270 303 GNSKTAMIAAISPADINYDETLSTLRYADRAKQIVCKAIVNEDANA 348 (459)
Q Consensus 303 Gns~t~~I~~isp~~~~~~eTlsTL~fa~rak~I~n~~~~n~~~~~ 348 (459)
|||+|.+|.|++|+..+..||.+||+|++||+.|+|.+.+|..-..
T Consensus 298 GNsRTtlIi~csPss~n~~ET~STl~fg~rak~ikN~v~~n~e~~~ 343 (607)
T KOG0240|consen 298 GNSRTTLIICCSPSSLNEAETKSTLRFGNRAKTIKNTVWVNLELTA 343 (607)
T ss_pred CCcceEEEEecCCccccccccccchhhccccccccchhhhhhHhhH
Confidence 9999999999999999999999999999999999999999976543
No 6
>PLN03188 kinesin-12 family protein; Provisional
Probab=100.00 E-value=7e-81 Score=674.97 Aligned_cols=337 Identities=43% Similarity=0.648 Sum_probs=286.3
Q ss_pred CCcEEEEEcCCCCccccccCCceEEEEcCCeEEEECCCCCCCCCCCCceeecceeecCCCCCCCCCCCHHHHHHHHHHHH
Q psy7270 2 SSVKVAVRVRPFNNREISRDCKSIIEMTGNTTVIINPKLPPESKDTHKNFNFDYSYYSHDPSASNFATQAMVYSDIGEEM 81 (459)
Q Consensus 2 ~~vkV~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~f~FD~vf~~~d~~~~~~~sQ~~vy~~~~~pl 81 (459)
++|+|||||||++..|. +...++.+.++.+.+ + .+.|.||+||++. ++|++||+.++.|+
T Consensus 98 s~VkV~VRVRPl~~~E~--g~~iV~~~s~dsl~I-~----------~qtFtFD~VFdp~-------aTQedVFe~vv~PL 157 (1320)
T PLN03188 98 SGVKVIVRMKPLNKGEE--GEMIVQKMSNDSLTI-N----------GQTFTFDSIADPE-------STQEDIFQLVGAPL 157 (1320)
T ss_pred CCeEEEEEcCCCCCccC--CCeeEEEcCCCeEEE-e----------CcEEeCCeeeCCC-------CCHHHHHHHHHHHH
Confidence 48999999999998753 334444444444433 2 2679999999765 89999999999999
Q ss_pred HHHhhcCCceEEEeecCCCCCcceeeccCCC-------CCCCCChHHHHHHHHHHHHhhccC------------------
Q psy7270 82 LEHAFEGYNVCIFAYGQTGAGKSYTMMGRQE-------VEGEEGIIPMICQDLFKRIKDTTN------------------ 136 (459)
Q Consensus 82 v~~~l~G~n~ti~aYGqTgSGKT~Tm~G~~~-------~~~~~Giipr~~~~lF~~i~~~~~------------------ 136 (459)
|+++++|||+||||||||||||||||+|+.. ....+|||||++++||..+.....
T Consensus 158 V~svLdGyNaTIFAYGQTGSGKTYTM~G~~~~~~de~~s~~e~GIIPRaledLF~~I~e~q~k~~d~~~~y~V~vSyLEI 237 (1320)
T PLN03188 158 VENCLAGFNSSVFAYGQTGSGKTYTMWGPANGLLEEHLSGDQQGLTPRVFERLFARINEEQIKHADRQLKYQCRCSFLEI 237 (1320)
T ss_pred HHHHhcCCcceeecCCCCCCCCCEeeCCCCCcccccccccccCCchHHHHHHHHHHHHhhhhhccccccceEEEEEEEee
Confidence 9999999999999999999999999999753 235689999999999999864311
Q ss_pred --Ccceec--ccCCcceEeeeCCCCceecCCccccccCHHHHHHHHHHHhhccccccccCCCCCCCceEEEEEEEEEeee
Q psy7270 137 --DKLKSR--WKNSNLRVREHPLLGPYVEDLSKLAVTCYRDIHDLIDEGNKARTVAATNMNETSSRSHAVFTIFFTQQAV 212 (459)
Q Consensus 137 --~~~~~~--~~~~~l~i~e~~~~g~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~ 212 (459)
+.+.++ .....+.|++++.+|++|.||+++.|.|+++++.+|..|..+|++++|.+|..|||||+||+|+|.+...
T Consensus 238 YNEkI~DLLsp~~k~L~IRED~kgGv~VeGLTEv~V~S~ED~l~LL~~G~~nR~tasT~mN~~SSRSHaIFtI~Ves~~k 317 (1320)
T PLN03188 238 YNEQITDLLDPSQKNLQIREDVKSGVYVENLTEEYVKTMKDVTQLLIKGLSNRRTGATSINAESSRSHSVFTCVVESRCK 317 (1320)
T ss_pred ecCcceeccccccCCceEEEcCCCCeEeCCCeEEeCCCHHHHHHHHHHHhccceeccCCCCCccCCCceeEEEEEEEeec
Confidence 111112 2345699999999999999999999999999999999999999999999999999999999999987654
Q ss_pred cCCCCccceeEeceeeeccCCCccccCCCCcccchhhhhhhhHhHHHHHHHHHHHHhhhhhhhhhhhcCCCCCccCCCCc
Q psy7270 213 DDMTDLTTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEISAVQHVAKKKKKADFIPYRDSV 292 (459)
Q Consensus 213 ~~~~~~~~~~~s~L~~VDLAGsEr~~~~~~~g~r~~E~~~IN~SL~~L~~vI~aL~~~~~~~~~~~~~~~~~~ipyRdSk 292 (459)
....+....+.|+|+|||||||||...+++.|.+++|+++||+||++||+||.+|++.+. .++..||||||||
T Consensus 318 ~~~dg~ss~r~SkLnLVDLAGSER~kkTga~G~RLkEA~~INKSLsaLGnVI~ALae~Sq-------~gk~~HIPYRDSK 390 (1320)
T PLN03188 318 SVADGLSSFKTSRINLVDLAGSERQKLTGAAGDRLKEAGNINRSLSQLGNLINILAEISQ-------TGKQRHIPYRDSR 390 (1320)
T ss_pred ccCCCCcceEEEEEEEEECCCchhccccCcccHHHHHHHHHhHHHHHHHHHHHHHHHhhc-------cCCCCcCCCCcch
Confidence 333333445679999999999999999999999999999999999999999999987421 2356799999999
Q ss_pred chhhhhhccCCCcceeeeeccCCCCCCHHHHHHHHHHHHHhhcccccceecccch------HHHHHHHHHHHHHHHHHH
Q psy7270 293 LTWLLRENLGGNSKTAMIAAISPADINYDETLSTLRYADRAKQIVCKAIVNEDAN------AKLIRELKEEIQRLRDLL 365 (459)
Q Consensus 293 LT~lL~dsLgGns~t~~I~~isp~~~~~~eTlsTL~fa~rak~I~n~~~~n~~~~------~~~i~~l~~ei~~L~~~l 365 (459)
||+||+|+|||||+|+|||||||+..+++||++||+||+||+.|+|+|++|.... ..+|++|++|+.+|+...
T Consensus 391 LTrLLQDSLGGNSKTvMIa~VSPs~~~~eETLSTLrFAsRAK~IKNkpvvNe~~~~~vn~LrelIr~Lk~EL~rLK~~~ 469 (1320)
T PLN03188 391 LTFLLQESLGGNAKLAMVCAISPSQSCKSETFSTLRFAQRAKAIKNKAVVNEVMQDDVNFLREVIRQLRDELQRVKANG 469 (1320)
T ss_pred HHHHHHHhcCCCceEEEEEecCCchhhHHHHHHHHHHHHHHhhcCccceeccchhhhHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999998643 236677777777777664
No 7
>KOG0242|consensus
Probab=100.00 E-value=6.2e-80 Score=660.30 Aligned_cols=342 Identities=42% Similarity=0.639 Sum_probs=297.1
Q ss_pred CCcEEEEEcCCCCccccccCCceEEEEcCCeEEEECCCCCCCCCCCCceeecceeecCCCCCCCCCCCHHHHHHHHHHHH
Q psy7270 2 SSVKVAVRVRPFNNREISRDCKSIIEMTGNTTVIINPKLPPESKDTHKNFNFDYSYYSHDPSASNFATQAMVYSDIGEEM 81 (459)
Q Consensus 2 ~~vkV~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~f~FD~vf~~~d~~~~~~~sQ~~vy~~~~~pl 81 (459)
.+|.|+|||||+++.+...+..+.+.+.++..++............+..|.||+||++. ++|++||+..++|+
T Consensus 6 ~~i~V~vrvRP~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~y~FD~VF~~~-------~t~~~VYe~~tkpi 78 (675)
T KOG0242|consen 6 EKILVSVRVRPLNEREDARGDRSDWHCINDTTLFKRVTKSLPEKSKPEKYEFDRVFGEE-------STQEDVYERTTKPL 78 (675)
T ss_pred ceeEEEEEeCCCCccccccCCccceEecCCceeEeeccccccccccccceeeeeecCCC-------CCHHHHHHhccHHH
Confidence 37899999999999877777777777777777665443322112225789999999765 89999999999999
Q ss_pred HHHhhcCCceEEEeecCCCCCcceeeccCCCCCCCCChHHHHHHHHHHHHhhccCCcc----eec------------ccC
Q psy7270 82 LEHAFEGYNVCIFAYGQTGAGKSYTMMGRQEVEGEEGIIPMICQDLFKRIKDTTNDKL----KSR------------WKN 145 (459)
Q Consensus 82 v~~~l~G~n~ti~aYGqTgSGKT~Tm~G~~~~~~~~Giipr~~~~lF~~i~~~~~~~~----~~~------------~~~ 145 (459)
|++|+.|||+||||||||||||||||.|... +|||||+++.+||+.|.+.....+ +|. ...
T Consensus 79 v~~~l~G~N~TVFAYG~TgSGKTyTM~G~~~---~PGii~la~~dif~~I~~~~~r~f~v~vSYlEIYNE~I~DLL~~~~ 155 (675)
T KOG0242|consen 79 LLSVLEGFNATVFAYGQTGSGKTYTMSGSED---DPGIIPLAMKDIFEKIDKSGEREFSVRVSYLEIYNERIRDLLNPDG 155 (675)
T ss_pred HHHHhcCcccceeeecCCCCCCceEEeccCC---CCCeeehHHHHHHHHHHhcCCceeEEEEEEEEEeccccccccCCCC
Confidence 9999999999999999999999999999865 499999999999999988763332 221 233
Q ss_pred CcceEeeeCCCCceecCCccccccCHHHHHHHHHHHhhccccccccCCCCCCCceEEEEEEEEEeeecCCCCccceeEec
Q psy7270 146 SNLRVREHPLLGPYVEDLSKLAVTCYRDIHDLIDEGNKARTVAATNMNETSSRSHAVFTIFFTQQAVDDMTDLTTEKVSK 225 (459)
Q Consensus 146 ~~l~i~e~~~~g~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~~~~~~~s~ 225 (459)
..+.+++|+.+|++|.||++..|.|+++++.+|..|+.+|+++.|.+|..|||||+||+|.|.+...... . ..++
T Consensus 156 ~~L~irED~~~gi~V~gL~e~~v~s~e~~~~ll~~g~~~R~~g~T~~N~~SSRSHaIl~i~i~s~~~~~~----~-~~s~ 230 (675)
T KOG0242|consen 156 GDLRLREDSEGGIVVPGLTEETVSSREELLELLQKGNKNRTTGETNLNEQSSRSHAILRITVESRGREAS----S-RVSK 230 (675)
T ss_pred CCceEeEcCCCCEEecCCeeecCCCHHHHHHHHHHhhccCcccccccccccchhhheeeEEEEecccccc----c-hhhe
Confidence 4599999999999999999999999999999999999999999999999999999999999998765442 1 6699
Q ss_pred eeeeccCCCccccCCCCcccchhhhhhhhHhHHHHHHHHHHHHhhhhhhhhhhhcCCCCCccCCCCcchhhhhhccCCCc
Q psy7270 226 ISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEISAVQHVAKKKKKADFIPYRDSVLTWLLRENLGGNS 305 (459)
Q Consensus 226 L~~VDLAGsEr~~~~~~~g~r~~E~~~IN~SL~~L~~vI~aL~~~~~~~~~~~~~~~~~~ipyRdSkLT~lL~dsLgGns 305 (459)
|+|||||||||+.++++.|.|++||++||+||++||+||.+|+++ ....||||||||||||||++|||||
T Consensus 231 L~lIDLAGSERas~T~~~G~RlkEG~~INrSLlaLgtVI~~Ls~~----------~~~~hipYRDSKLTRiLq~sLgGn~ 300 (675)
T KOG0242|consen 231 LNLIDLAGSERASRTGNEGVRLKEGAHINRSLLALGTVINKLSEG----------KRPRHIPYRDSKLTRLLQDSLGGNA 300 (675)
T ss_pred ehhhhhhhhhhhhhhhccceeccccchhhHHHHHHHHHHHHHccc----------cccCCCCccccHHHHhchhhcCCCc
Confidence 999999999999999999999999999999999999999999874 2455999999999999999999999
Q ss_pred ceeeeeccCCCCCCHHHHHHHHHHHHHhhcccccceecccchH-HHHHHHHHHHHHHHHHHHhh
Q psy7270 306 KTAMIAAISPADINYDETLSTLRYADRAKQIVCKAIVNEDANA-KLIRELKEEIQRLRDLLKQE 368 (459)
Q Consensus 306 ~t~~I~~isp~~~~~~eTlsTL~fa~rak~I~n~~~~n~~~~~-~~i~~l~~ei~~L~~~l~~~ 368 (459)
+|+|||||+|+..+|+||.+||+||+|||+|++++.+|..... .++..++.++..|+.++...
T Consensus 301 rt~~I~tisp~~~~~~eT~nTL~fAsrak~i~~~~~~n~~~~~~~~~~~~~~~i~~l~~e~~~~ 364 (675)
T KOG0242|consen 301 RTAIIATISPSSSHYEETKNTLKFASRAKEITTKAQVNVILSDKALLKYLQREIAELEAELERL 364 (675)
T ss_pred cEEEEEEeCchhhHHHHHHHHHHHHHHhhhcccccccceecchhhhhHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999976544 34555568888888877653
No 8
>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.
Probab=100.00 E-value=3.6e-78 Score=613.00 Aligned_cols=335 Identities=68% Similarity=1.050 Sum_probs=296.3
Q ss_pred CCcEEEEEcCCCCccccccCCceEEEEcCCeEEEECCCCCCCCCCCCceeecceeecCCCCCCCCCCCHHHHHHHHHHHH
Q psy7270 2 SSVKVAVRVRPFNNREISRDCKSIIEMTGNTTVIINPKLPPESKDTHKNFNFDYSYYSHDPSASNFATQAMVYSDIGEEM 81 (459)
Q Consensus 2 ~~vkV~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~f~FD~vf~~~d~~~~~~~sQ~~vy~~~~~pl 81 (459)
++|+|+|||||++..|...+...++.+.++.+.+.++..........+.|.||+||+++|...+.+++|++||+.++.|+
T Consensus 1 ~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~f~FD~vf~~~~~~~~~~~tq~~vf~~~~~p~ 80 (356)
T cd01365 1 ANVKVAVRVRPFNSREKNRGSKCIVQMPGKVTTLKNPKAADATRKKPKSFSFDHSYWSHDSEDPHYASQEDVFEDLGREL 80 (356)
T ss_pred CCEEEEEEeCcCChhhhccCCceEEEECCCEEEEEcCCcccccccCceEEECCeEecccCCCCCCCCCHHHHHHHHHHHH
Confidence 58999999999999999988899999999888887765422223456899999999998888888899999999999999
Q ss_pred HHHhhcCCceEEEeecCCCCCcceeeccCCCCCCCCChHHHHHHHHHHHHhhccCCc----------------ceecc--
Q psy7270 82 LEHAFEGYNVCIFAYGQTGAGKSYTMMGRQEVEGEEGIIPMICQDLFKRIKDTTNDK----------------LKSRW-- 143 (459)
Q Consensus 82 v~~~l~G~n~ti~aYGqTgSGKT~Tm~G~~~~~~~~Giipr~~~~lF~~i~~~~~~~----------------~~~~~-- 143 (459)
|+++++|||+||||||||||||||||+|+.. ++|||||++++||+.+....... +.++.
T Consensus 81 v~~~l~G~n~~i~ayGqtGSGKT~Tm~G~~~---~~Gli~r~~~~Lf~~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~ 157 (356)
T cd01365 81 LDHAFEGYNVCLFAYGQTGSGKSYTMMGYKE---EKGIIPRLCEELFQRIESKKEQNLSYEVEVSYMEIYNEKVRDLLNP 157 (356)
T ss_pred HHHHhCCCceEEEEecCCCCCCeEEecCCCC---CCchHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCeeeeCCCC
Confidence 9999999999999999999999999999865 59999999999999997654421 11111
Q ss_pred ---cCCcceEeeeCCCCceecCCccccccCHHHHHHHHHHHhhccccccccCCCCCCCceEEEEEEEEEeeecCCCCccc
Q psy7270 144 ---KNSNLRVREHPLLGPYVEDLSKLAVTCYRDIHDLIDEGNKARTVAATNMNETSSRSHAVFTIFFTQQAVDDMTDLTT 220 (459)
Q Consensus 144 ---~~~~l~i~e~~~~g~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~~~~ 220 (459)
....+.+++++..|++|.|++++.|.|++|++.+|..|.++|.+++|.+|..|||||+||+|+|.+...........
T Consensus 158 ~~~~~~~l~i~~~~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~l~v~~~~~~~~~~~~~ 237 (356)
T cd01365 158 KKKNKGNLKVREHPVLGPYVEDLSKVAVTSYEDIQNLLEEGNKSRTTASTNMNDTSSRSHAVFTIVLTQKKLDKETDLTT 237 (356)
T ss_pred CccCCcCceEEECCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhcccccCCCCCCCcCCceEEEEEEEEEEecccCCCCCc
Confidence 13578999999999999999999999999999999999999999999999999999999999999876654333455
Q ss_pred eeEeceeeeccCCCccccCCCCcccchhhhhhhhHhHHHHHHHHHHHHhhhhhhhhhhhcCCCCCccCCCCcchhhhhhc
Q psy7270 221 EKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEISAVQHVAKKKKKADFIPYRDSVLTWLLREN 300 (459)
Q Consensus 221 ~~~s~L~~VDLAGsEr~~~~~~~g~r~~E~~~IN~SL~~L~~vI~aL~~~~~~~~~~~~~~~~~~ipyRdSkLT~lL~ds 300 (459)
...|+|+|||||||||..+++..|.+++|+..||+||++|++||.+|+..... ...++..||||||||||+||+|+
T Consensus 238 ~~~s~l~~VDLAGsEr~~~~~~~~~~~~E~~~IN~SL~aL~~vi~~l~~~~~~----~~~~~~~~ipyR~SkLT~lL~~~ 313 (356)
T cd01365 238 EKVSKISLVDLAGSERASSTGAEGDRLKEGSNINKSLTTLGKVISALADNSSA----KSKKKSSFIPYRDSVLTWLLKEN 313 (356)
T ss_pred eEEEEEEeeecccccccccccccchhhHHHHHHhHHHHHHHHHHHHHHhcccc----cccCCCCcCCCcCcHHHHHHHHh
Confidence 67899999999999999999999999999999999999999999999874321 01235789999999999999999
Q ss_pred cCCCcceeeeeccCCCCCCHHHHHHHHHHHHHhhcccccceec
Q psy7270 301 LGGNSKTAMIAAISPADINYDETLSTLRYADRAKQIVCKAIVN 343 (459)
Q Consensus 301 LgGns~t~~I~~isp~~~~~~eTlsTL~fa~rak~I~n~~~~n 343 (459)
|||||+|+||+||||+..+++||++||+||++|++|+|.|++|
T Consensus 314 lgg~s~t~~I~~vsp~~~~~~eTl~tL~fa~~~~~i~~~~~~~ 356 (356)
T cd01365 314 LGGNSKTAMIATISPADINYEETLSTLRYADRAKKIVNVAVVN 356 (356)
T ss_pred cCCCceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccCccccC
Confidence 9999999999999999999999999999999999999999986
No 9
>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a sec
Probab=100.00 E-value=2.3e-78 Score=609.81 Aligned_cols=314 Identities=41% Similarity=0.676 Sum_probs=278.5
Q ss_pred CcEEEEEcCCCCccccccCCceEEEEcCCeEEEECCCCCCC-------CCCCCceeecceeecCCCCCCCCCCCHHHHHH
Q psy7270 3 SVKVAVRVRPFNNREISRDCKSIIEMTGNTTVIINPKLPPE-------SKDTHKNFNFDYSYYSHDPSASNFATQAMVYS 75 (459)
Q Consensus 3 ~vkV~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~~~~~-------~~~~~~~f~FD~vf~~~d~~~~~~~sQ~~vy~ 75 (459)
+|+|+|||||+++.|...+...++.+.++.++++++..... .....+.|.||+||++. ++|++||+
T Consensus 1 ~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~f~Fd~vf~~~-------~~q~~vf~ 73 (338)
T cd01370 1 SLTVAVRVRPFNEKEKQEGTRRVVKVVDDRMLVFDPKDEEDAFRNLRARRNKELKYSFDRVFDET-------STQEEVYE 73 (338)
T ss_pred CeEEEEEcCCCChhhhhcCCceEEEEcCCCEEEEcCCcccccccchhcccCCceEEEeccccCCC-------CCHHHHHH
Confidence 69999999999999988899999999888888887654321 13346789999999765 89999999
Q ss_pred HHHHHHHHHhhcCCceEEEeecCCCCCcceeeccCCCCCCCCChHHHHHHHHHHHHhhccCC-c--------------ce
Q psy7270 76 DIGEEMLEHAFEGYNVCIFAYGQTGAGKSYTMMGRQEVEGEEGIIPMICQDLFKRIKDTTND-K--------------LK 140 (459)
Q Consensus 76 ~~~~plv~~~l~G~n~ti~aYGqTgSGKT~Tm~G~~~~~~~~Giipr~~~~lF~~i~~~~~~-~--------------~~ 140 (459)
.++.|+|+++++|||+||||||||||||||||+|+.. ++|||||++++||+.+...... . +.
T Consensus 74 ~~~~plv~~~~~G~n~~i~ayGqtGSGKTyTm~G~~~---~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIyne~v~ 150 (338)
T cd01370 74 NTTKPLVDGVLNGYNATVFAYGATGAGKTHTMLGTDS---DPGLMVLTMKDLFDKIEERKDDKEFEVSLSYLEIYNETIR 150 (338)
T ss_pred HHHHHHHHHHHCCCCceEEeeCCCCCCCeEEEcCCCC---CCchHHHHHHHHHHhhhhcccCceEEEEEEEEEEECCEEE
Confidence 9999999999999999999999999999999999864 5999999999999999866521 1 11
Q ss_pred ecc--cCCcceEeeeCCCCceecCCccccccCHHHHHHHHHHHhhccccccccCCCCCCCceEEEEEEEEEeeecCCCCc
Q psy7270 141 SRW--KNSNLRVREHPLLGPYVEDLSKLAVTCYRDIHDLIDEGNKARTVAATNMNETSSRSHAVFTIFFTQQAVDDMTDL 218 (459)
Q Consensus 141 ~~~--~~~~l~i~e~~~~g~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~~ 218 (459)
++. ....+.+++++.++++|.|++++.|.+++|++++|+.|.++|.+++|.+|..|||||+||+|+|.+...... ..
T Consensus 151 DLL~~~~~~l~i~ed~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i~i~~~~~~~~-~~ 229 (338)
T cd01370 151 DLLSPSSGPLELREDPNQGIVVAGLTEHQPKSAEEILELLMKGNRNRTQEPTEANATSSRSHAVLQITVRQKDRTAS-IN 229 (338)
T ss_pred ECCCCCCCCceEEEcCCCCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccccccCccCcceEEEEEEEEEEecCCC-CC
Confidence 222 256899999999999999999999999999999999999999999999999999999999999998765421 12
Q ss_pred cceeEeceeeeccCCCccccCCCCcccchhhhhhhhHhHHHHHHHHHHHHhhhhhhhhhhhcCCCCCccCCCCcchhhhh
Q psy7270 219 TTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEISAVQHVAKKKKKADFIPYRDSVLTWLLR 298 (459)
Q Consensus 219 ~~~~~s~L~~VDLAGsEr~~~~~~~g~r~~E~~~IN~SL~~L~~vI~aL~~~~~~~~~~~~~~~~~~ipyRdSkLT~lL~ 298 (459)
.....|+|+|||||||||..+++..|.+++|+.+||+||++|++||.+|+... ++..||||||||||+||+
T Consensus 230 ~~~~~s~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~~L~~~~---------~~~~~ipyR~SkLT~lL~ 300 (338)
T cd01370 230 QQVRIGKLSLIDLAGSERASATNNRGQRLKEGANINRSLLALGNCINALVDGK---------KKNKHIPYRDSKLTRLLK 300 (338)
T ss_pred CcEEEEEEEEEECCCCccccccCCCCccccccchhhHHHHHHHHHHHHHHhcc---------CCCCcCCCcCCHHHHHHH
Confidence 34567999999999999999999999999999999999999999999999741 135899999999999999
Q ss_pred hccCCCcceeeeeccCCCCCCHHHHHHHHHHHHHhhcc
Q psy7270 299 ENLGGNSKTAMIAAISPADINYDETLSTLRYADRAKQI 336 (459)
Q Consensus 299 dsLgGns~t~~I~~isp~~~~~~eTlsTL~fa~rak~I 336 (459)
|+|||||+|+||+||||+..+++||++||+||+|||+|
T Consensus 301 d~Lggn~~t~~I~~vsp~~~~~~eTl~TL~fa~ra~~I 338 (338)
T cd01370 301 DSLGGNCKTVMIANISPSSSHYEETHNTLKYANRAKNI 338 (338)
T ss_pred HhcCCCCeEEEEEEeCCchhhHHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999999999987
No 10
>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second
Probab=100.00 E-value=3.7e-78 Score=608.07 Aligned_cols=310 Identities=44% Similarity=0.673 Sum_probs=269.1
Q ss_pred CcEEEEEcCCCCccccccCCceEEEEcCCeEEEECCCCCCCCCCCCceeecceeecCCCCCCCCCCCHHHHHHHHHHHHH
Q psy7270 3 SVKVAVRVRPFNNREISRDCKSIIEMTGNTTVIINPKLPPESKDTHKNFNFDYSYYSHDPSASNFATQAMVYSDIGEEML 82 (459)
Q Consensus 3 ~vkV~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~f~FD~vf~~~d~~~~~~~sQ~~vy~~~~~plv 82 (459)
+|+|+|||||++..|...+...++...+...++.... ..+.|.||+||++. ++|++||+.++.|+|
T Consensus 2 ~i~V~vRvRP~~~~e~~~~~~~~v~~~~~~~~~~~~~-------~~~~f~FD~vf~~~-------~~q~~vy~~~~~p~v 67 (337)
T cd01373 2 AVKVVVRIRPPNEIEADGGQGQCLKKLSSDTLVWHSH-------PPRMFTFDHVADSN-------TNQEDVFQSVGKPLV 67 (337)
T ss_pred CeEEEEEcCcCChhhcccCCCeEEEEcCCCcEEeeCC-------CCcEEeCCeEeCCC-------CCHHHHHHHHHHHHH
Confidence 7999999999999998766666666665444444322 14789999999875 899999999999999
Q ss_pred HHhhcCCceEEEeecCCCCCcceeeccCCCCC-----CCCChHHHHHHHHHHHHhhccC---C----------------c
Q psy7270 83 EHAFEGYNVCIFAYGQTGAGKSYTMMGRQEVE-----GEEGIIPMICQDLFKRIKDTTN---D----------------K 138 (459)
Q Consensus 83 ~~~l~G~n~ti~aYGqTgSGKT~Tm~G~~~~~-----~~~Giipr~~~~lF~~i~~~~~---~----------------~ 138 (459)
+++++|||+||||||||||||||||+|+.... ..+|||||++++||..+..... . .
T Consensus 68 ~~~~~G~n~ti~aYGqTGSGKTyTm~G~~~~~~~~~~~~~Giipr~~~~Lf~~i~~~~~~~~~~~~~~v~~S~~EIyne~ 147 (337)
T cd01373 68 EDCLSGYNGSIFAYGQTGSGKTYTMMGPSSSDDESPHGLQGVIPRIFEYLFSLIQREEEKRGDGLKFLCKCSFLEIYNEQ 147 (337)
T ss_pred HHHhCCCceeEEEeCCCCCCceEEecCCCCccccccccCCCHHHHHHHHHHHHHHhhhhhcccCceEEEEEEEEeecCCE
Confidence 99999999999999999999999999986432 4689999999999998864311 1 1
Q ss_pred ceec--ccCCcceEeeeCCCCceecCCccccccCHHHHHHHHHHHhhccccccccCCCCCCCceEEEEEEEEEeeecCCC
Q psy7270 139 LKSR--WKNSNLRVREHPLLGPYVEDLSKLAVTCYRDIHDLIDEGNKARTVAATNMNETSSRSHAVFTIFFTQQAVDDMT 216 (459)
Q Consensus 139 ~~~~--~~~~~l~i~e~~~~g~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~ 216 (459)
+.++ .....+.+++++.+|++|.|++++.|.|++|++++|..|.++|++++|.+|..|||||+||+|+|.+......
T Consensus 148 v~DLL~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~~~- 226 (337)
T cd01373 148 ITDLLDPTSRNLKIREDIKKGVYVENLTEEYVSSYEDVYQVLLKGLSNRKVAATSMNSESSRSHAVFTCTIESWEKKAS- 226 (337)
T ss_pred eeeCCCCCCCCceEEECCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhccCcccCcCCCCCCCccEEEEEEEEEeecCCC-
Confidence 1111 2345799999999999999999999999999999999999999999999999999999999999987654322
Q ss_pred CccceeEeceeeeccCCCccccCCCCcccchhhhhhhhHhHHHHHHHHHHHHhhhhhhhhhhhcCCCCCccCCCCcchhh
Q psy7270 217 DLTTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEISAVQHVAKKKKKADFIPYRDSVLTWL 296 (459)
Q Consensus 217 ~~~~~~~s~L~~VDLAGsEr~~~~~~~g~r~~E~~~IN~SL~~L~~vI~aL~~~~~~~~~~~~~~~~~~ipyRdSkLT~l 296 (459)
....+.|+|+|||||||||..++++.|.+++|+.+||+||++|++||.+|++.. .++..||||||||||+|
T Consensus 227 -~~~~~~s~l~~VDLAGSEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~aL~~~~--------~~~~~~ipyR~SkLT~l 297 (337)
T cd01373 227 -STNIRTSRLNLVDLAGSERQKDDGAEGVRLKEAKNINKSLSTLGHVIMALVDVA--------HGKQRHVPYRDSKLTFL 297 (337)
T ss_pred -CCcEEEEEEEEEECCCCCcccccCCccHhhhhhccccHHHHHHHHHHHHHHhhc--------cCCCCccCCcccHHHHH
Confidence 224567999999999999999999999999999999999999999999998632 12478999999999999
Q ss_pred hhhccCCCcceeeeeccCCCCCCHHHHHHHHHHHHHhhcc
Q psy7270 297 LRENLGGNSKTAMIAAISPADINYDETLSTLRYADRAKQI 336 (459)
Q Consensus 297 L~dsLgGns~t~~I~~isp~~~~~~eTlsTL~fa~rak~I 336 (459)
|+|+|||||+|+|||||||+..+++||++||+||+|||+|
T Consensus 298 L~dsLggns~t~~I~~vsP~~~~~~eTl~TL~fa~rak~I 337 (337)
T cd01373 298 LRDSLGGNAKTTIIANVSPSSKCFGETLSTLKFAQRAKLI 337 (337)
T ss_pred HHHhcCCCceEEEEEEECCCcccHHHHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999999999987
No 11
>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, a
Probab=100.00 E-value=1.9e-76 Score=597.16 Aligned_cols=316 Identities=35% Similarity=0.550 Sum_probs=272.0
Q ss_pred CcEEEEEcCCCCccccccCCceEEEEcCCeEEEECCCCCC-------CCCCCCceeecceeecCCCCCCCCCCCHHHHHH
Q psy7270 3 SVKVAVRVRPFNNREISRDCKSIIEMTGNTTVIINPKLPP-------ESKDTHKNFNFDYSYYSHDPSASNFATQAMVYS 75 (459)
Q Consensus 3 ~vkV~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~~~~-------~~~~~~~~f~FD~vf~~~d~~~~~~~sQ~~vy~ 75 (459)
+|+|+|||||+++.|...+...++.+.++..+++++.... ......+.|.||+||++. ++|++||+
T Consensus 2 ~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~f~Fd~vf~~~-------~tq~~vy~ 74 (345)
T cd01368 2 PVKVYLRVRPLSKDELESEDEGCIEVINSTTIQLHPPKGSAARKSERNGGQKETKFSFSKVFGPN-------TTQKEFFE 74 (345)
T ss_pred CEEEEEEeCcCCchhhccCCCceEEEcCCCEEEEeCCccccccccccccCCCceEeecCeEECCC-------CCHHHHHH
Confidence 6999999999999998877777887776666665443221 123356799999999765 89999999
Q ss_pred HHHHHHHHHhhcCCceEEEeecCCCCCcceeeccCCCCCCCCChHHHHHHHHHHHHhhc---------cCCcceeccc--
Q psy7270 76 DIGEEMLEHAFEGYNVCIFAYGQTGAGKSYTMMGRQEVEGEEGIIPMICQDLFKRIKDT---------TNDKLKSRWK-- 144 (459)
Q Consensus 76 ~~~~plv~~~l~G~n~ti~aYGqTgSGKT~Tm~G~~~~~~~~Giipr~~~~lF~~i~~~---------~~~~~~~~~~-- 144 (459)
.++.|+|+++++|||+||||||||||||||||+|+.. ++|||||++++||+.+.+. .++.+.++..
T Consensus 75 ~~~~p~v~~~l~G~n~ti~aYGqtGSGKTyTm~G~~~---~~Gli~r~~~~lF~~~~~~~v~~S~~EIyne~v~DLL~~~ 151 (345)
T cd01368 75 GTALPLVQDLLKGKNSLLFTYGVTNSGKTYTMQGSPG---DGGILPRSLDVIFNSIGGYSVFVSYVEIYNNYIYDLLEDS 151 (345)
T ss_pred HHHHHHHHHHhCCCceEEEEeCCCCCCCeEEecCCCC---CCchHHHHHHHHHHHHHheeEEEEEEEEeCCEeEeCCCCc
Confidence 9999999999999999999999999999999999864 6999999999999998651 1222222221
Q ss_pred ------CCcceEeeeCCCCceecCCccccccCHHHHHHHHHHHhhccccccccCCCCCCCceEEEEEEEEEeeecCCC--
Q psy7270 145 ------NSNLRVREHPLLGPYVEDLSKLAVTCYRDIHDLIDEGNKARTVAATNMNETSSRSHAVFTIFFTQQAVDDMT-- 216 (459)
Q Consensus 145 ------~~~l~i~e~~~~g~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~-- 216 (459)
...+.+++++.++++|.|++++.|.|++|++.+|..|.++|.+++|.+|..|||||+||+|+|.+.......
T Consensus 152 ~~~~~~~~~l~i~ed~~~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~i~~i~v~~~~~~~~~~~ 231 (345)
T cd01368 152 PSSTKKRQSLRLREDHNGNMYVAGLTEVEVSSTEEAREVFKRGQKNRRVAGTKLNRESSRSHSVFTIKLVQAPGDSDGDV 231 (345)
T ss_pred cccccCCCceEEEECCCCCEEecCCEEEEeCCHHHHHHHHHHhhccceeccccCcCCCCCceEEEEEEEEEeccCccccc
Confidence 236899999999999999999999999999999999999999999999999999999999999987543211
Q ss_pred --CccceeEeceeeeccCCCccccCCCCcccchhhhhhhhHhHHHHHHHHHHHHhhhhhhhhhhhcCCCCCccCCCCcch
Q psy7270 217 --DLTTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEISAVQHVAKKKKKADFIPYRDSVLT 294 (459)
Q Consensus 217 --~~~~~~~s~L~~VDLAGsEr~~~~~~~g~r~~E~~~IN~SL~~L~~vI~aL~~~~~~~~~~~~~~~~~~ipyRdSkLT 294 (459)
.......|+|+|||||||||..++++.|.+++|+..||+||++|++||.+|++... ...+..||||||||||
T Consensus 232 ~~~~~~~~~s~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~aL~~vi~aL~~~~~------~~~~~~~iPyR~SkLT 305 (345)
T cd01368 232 DQDKDQITVSQLSLVDLAGSERTSRTQNTGERLKEAGNINTSLMTLGKCIEVLRENQL------SGSTNKMVPYRDSKLT 305 (345)
T ss_pred ccCCCceEEEEEEEEecccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhc------ccCCCCcCCCcCCHHH
Confidence 12345679999999999999999999999999999999999999999999987421 1126789999999999
Q ss_pred hhhhhccCCCcceeeeeccCCCCCCHHHHHHHHHHHHHhh
Q psy7270 295 WLLRENLGGNSKTAMIAAISPADINYDETLSTLRYADRAK 334 (459)
Q Consensus 295 ~lL~dsLgGns~t~~I~~isp~~~~~~eTlsTL~fa~rak 334 (459)
+||+|+|||||+|+||+||||+..+++||++||+||.+|+
T Consensus 306 ~lL~~~l~g~s~t~~I~~vsp~~~~~~eTl~tL~fa~~a~ 345 (345)
T cd01368 306 HLFQNYFDGEGKARMIVNVNPCASDYDETLHVMKFSAIAQ 345 (345)
T ss_pred HHHHHhcCCCCeEEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999985
No 12
>cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil d
Probab=100.00 E-value=5.4e-75 Score=589.42 Aligned_cols=322 Identities=41% Similarity=0.624 Sum_probs=281.3
Q ss_pred CCcEEEEEcCCCCccccccCCceEEEEcCC-eEEEECCCCCCCCCCCCceeecceeecCCCCCCCCCCCHHHHHHHHHHH
Q psy7270 2 SSVKVAVRVRPFNNREISRDCKSIIEMTGN-TTVIINPKLPPESKDTHKNFNFDYSYYSHDPSASNFATQAMVYSDIGEE 80 (459)
Q Consensus 2 ~~vkV~vRvRP~~~~E~~~~~~~~v~~~~~-~~~~~~~~~~~~~~~~~~~f~FD~vf~~~d~~~~~~~sQ~~vy~~~~~p 80 (459)
.+|+|+|||||+...|...++..++.+.+. +.+.+.+... .....+.|.||+||++. ++|++||+.++.|
T Consensus 2 ~~i~V~vRvRP~~~~e~~~~~~~~i~~~~~~~~i~~~~~~~--~~~~~~~f~Fd~vf~~~-------~~q~~vy~~~~~p 72 (352)
T cd01364 2 SNIQVVVRCRPRNSRERKEKSSVVVEVSGSSKEIIVSTGGA--DKQSTKTYTFDKVFGPE-------ADQIEVYSQVVSP 72 (352)
T ss_pred CCEEEEEEcCcCCccccccCCCeEEEEcCCCcEEEEcCCCc--ccccceeEeccccCCCC-------CCHHHHHHHHHHH
Confidence 589999999999999988888888888754 5555544321 23356789999999775 8999999999999
Q ss_pred HHHHhhcCCceEEEeecCCCCCcceeeccCCCC--------CCCCChHHHHHHHHHHHHhhccCC-------------cc
Q psy7270 81 MLEHAFEGYNVCIFAYGQTGAGKSYTMMGRQEV--------EGEEGIIPMICQDLFKRIKDTTND-------------KL 139 (459)
Q Consensus 81 lv~~~l~G~n~ti~aYGqTgSGKT~Tm~G~~~~--------~~~~Giipr~~~~lF~~i~~~~~~-------------~~ 139 (459)
+|+++++|||+||||||||||||||||+|+... +..+|||||++++||+.+...... .+
T Consensus 73 lv~~~~~G~n~~i~ayG~tgSGKTyTl~G~~~~~~~~~~~~~~~~Glipr~~~~Lf~~~~~~~~~~~v~~S~~EIy~e~v 152 (352)
T cd01364 73 ILDEVLMGYNCTIFAYGQTGTGKTYTMEGDRTDNKGSTWELSPHAGIIPRALYQLFEKLESQNTEYSVKVSYLELYNEEL 152 (352)
T ss_pred HHHHHhCCCeEEEEECCCCCCCCcEEecCCCcccccccccccccCCchHHHHHHHHHHHHhccceeEEEEEEEEeeCCee
Confidence 999999999999999999999999999998654 456899999999999998764211 11
Q ss_pred eecc-----cCCcceEeee--CCCCceecCCccccccCHHHHHHHHHHHhhccccccccCCCCCCCceEEEEEEEEEeee
Q psy7270 140 KSRW-----KNSNLRVREH--PLLGPYVEDLSKLAVTCYRDIHDLIDEGNKARTVAATNMNETSSRSHAVFTIFFTQQAV 212 (459)
Q Consensus 140 ~~~~-----~~~~l~i~e~--~~~g~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~ 212 (459)
.++. ....+.++++ +.+|++|.|++++.|.|++|++.+|..|.++|.+++|.+|..|||||+||+|.|.+...
T Consensus 153 ~DLL~~~~~~~~~l~i~e~~~~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRSH~i~~i~i~~~~~ 232 (352)
T cd01364 153 FDLLSSESDLNKPLRIFDDTNNKGGVVIQGLEEITVNNANEGLKLLEKGSAKRKTAATLMNDQSSRSHSIFSITIHIKET 232 (352)
T ss_pred eeCCCCccccCccceEEeccCcCCCEEeCCcEEEEeCCHHHHHHHHHHHhhhcccccCcCCCCCCCCceEEEEEEEEecc
Confidence 2222 1457899999 58999999999999999999999999999999999999999999999999999998654
Q ss_pred cCCCCccceeEeceeeeccCCCccccCCCCcccchhhhhhhhHhHHHHHHHHHHHHhhhhhhhhhhhcCCCCCccCCCCc
Q psy7270 213 DDMTDLTTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEISAVQHVAKKKKKADFIPYRDSV 292 (459)
Q Consensus 213 ~~~~~~~~~~~s~L~~VDLAGsEr~~~~~~~g~r~~E~~~IN~SL~~L~~vI~aL~~~~~~~~~~~~~~~~~~ipyRdSk 292 (459)
... +......|+|+||||||||+..+.++.+.+++|+..||+||++|++||.+|+. +..|||||+||
T Consensus 233 ~~~-~~~~~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~iN~SL~~L~~vi~al~~------------~~~~vpyR~S~ 299 (352)
T cd01364 233 TIS-GEELVKIGKLNLVDLAGSENIGRSGAENKRAREAGNINQSLLTLGRVINALVE------------KSPHIPYRESK 299 (352)
T ss_pred CCC-CCccEEEEEEEEEECCCccccccccCcchhhHHHhhhhHHHHHHHHHHHHHHc------------CCCCCCCcccH
Confidence 322 22334579999999999999999999999999999999999999999999986 46799999999
Q ss_pred chhhhhhccCCCcceeeeeccCCCCCCHHHHHHHHHHHHHhhcccccceeccc
Q psy7270 293 LTWLLRENLGGNSKTAMIAAISPADINYDETLSTLRYADRAKQIVCKAIVNED 345 (459)
Q Consensus 293 LT~lL~dsLgGns~t~~I~~isp~~~~~~eTlsTL~fa~rak~I~n~~~~n~~ 345 (459)
||+||+|+|||||+|+||+||||+..+++||++||+||++|++|+|+|++|.+
T Consensus 300 LT~lL~~~Lgg~s~t~~I~~vsp~~~~~~eTl~TL~~a~~~~~i~n~P~~n~~ 352 (352)
T cd01364 300 LTRLLQDSLGGRTKTSIIATISPASINLEETLSTLEYAHRAKNIKNKPEVNQK 352 (352)
T ss_pred HHHHHHHhcCCCceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccCccccCCC
Confidence 99999999999999999999999999999999999999999999999999964
No 13
>cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain
Probab=100.00 E-value=7.5e-75 Score=583.68 Aligned_cols=314 Identities=48% Similarity=0.710 Sum_probs=275.3
Q ss_pred CCcEEEEEcCCCCccccccCCceEEEEcC--CeEEEECCCCCCCCCCCCceeecceeecCCCCCCCCCCCHHHHHHHHHH
Q psy7270 2 SSVKVAVRVRPFNNREISRDCKSIIEMTG--NTTVIINPKLPPESKDTHKNFNFDYSYYSHDPSASNFATQAMVYSDIGE 79 (459)
Q Consensus 2 ~~vkV~vRvRP~~~~E~~~~~~~~v~~~~--~~~~~~~~~~~~~~~~~~~~f~FD~vf~~~d~~~~~~~sQ~~vy~~~~~ 79 (459)
.+|+|+|||||+++.|...+..+++.+++ ..+.+.++.. ......+.|.||+||++. ++|++||+.++.
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~f~fd~vf~~~-------~~q~~vy~~~~~ 71 (333)
T cd01371 1 ENVKVVVRCRPLNKREKSEGAPEIVGVDENRGQVTVHNPKA--DAKEPPKVFTFDAVYDPN-------STQEDVYNETAR 71 (333)
T ss_pred CCeEEEEEcCcCChhhhhcCCCeEEEEcCCCCEEEEeCCcc--cccCCCceeeeccccCCC-------ccHHHHHHHHHH
Confidence 47999999999999998888888887753 3334433332 233457899999999765 899999999999
Q ss_pred HHHHHhhcCCceEEEeecCCCCCcceeeccCCCCCCCCChHHHHHHHHHHHHhhccCCc--------------ceecc--
Q psy7270 80 EMLEHAFEGYNVCIFAYGQTGAGKSYTMMGRQEVEGEEGIIPMICQDLFKRIKDTTNDK--------------LKSRW-- 143 (459)
Q Consensus 80 plv~~~l~G~n~ti~aYGqTgSGKT~Tm~G~~~~~~~~Giipr~~~~lF~~i~~~~~~~--------------~~~~~-- 143 (459)
|+|+++++|||+||||||||||||||||+|+......+|||||++++||+.+....... +.++.
T Consensus 72 plv~~~~~G~n~~i~ayG~tgSGKTyTm~G~~~~~~~~Glipr~~~~Lf~~~~~~~~~~~~v~~S~~Eiy~e~v~DLL~~ 151 (333)
T cd01371 72 PLVDSVLEGYNGTIFAYGQTGTGKTFTMEGVREPPELRGIIPNSFAHIFGHIAKAENVQFLVRVSYLEIYNEEVRDLLGK 151 (333)
T ss_pred HHHHHHhCCCceeEEecCCCCCCCcEeecCCCCcccccchHHHHHHHHHHHHhhccCccEEEEEEEEEeeCCeeeeCCCC
Confidence 99999999999999999999999999999998766789999999999999987654322 11111
Q ss_pred -cCCcceEeeeCCCCceecCCccccccCHHHHHHHHHHHhhccccccccCCCCCCCceEEEEEEEEEeeecCCCCcccee
Q psy7270 144 -KNSNLRVREHPLLGPYVEDLSKLAVTCYRDIHDLIDEGNKARTVAATNMNETSSRSHAVFTIFFTQQAVDDMTDLTTEK 222 (459)
Q Consensus 144 -~~~~l~i~e~~~~g~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~~~~~~ 222 (459)
....+.+++++..+++|.|++++.|.|++++..+|..|.++|.+++|.+|..|||||+||+|+|++...... +.....
T Consensus 152 ~~~~~l~i~~~~~~~~~v~~l~~~~v~s~~~~~~~l~~g~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~-~~~~~~ 230 (333)
T cd01371 152 DQKKKLELKERPDRGVYVKDLSMFVVKNAEEMDKLMTLGNKNRSVGATNMNEDSSRSHSIFTITIECSEKGED-GENHIR 230 (333)
T ss_pred CCCCceeEEEcCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhhCccccccccCCCCCCcEEEEEEEEEEeccCC-CCCcEE
Confidence 234789999999999999999999999999999999999999999999999999999999999998765431 223456
Q ss_pred EeceeeeccCCCccccCCCCcccchhhhhhhhHhHHHHHHHHHHHHhhhhhhhhhhhcCCCCCccCCCCcchhhhhhccC
Q psy7270 223 VSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEISAVQHVAKKKKKADFIPYRDSVLTWLLRENLG 302 (459)
Q Consensus 223 ~s~L~~VDLAGsEr~~~~~~~g~r~~E~~~IN~SL~~L~~vI~aL~~~~~~~~~~~~~~~~~~ipyRdSkLT~lL~dsLg 302 (459)
.|+|+|||||||||..+++..|.+++|+..||+||.+|++||.+|++. +..|||||+||||+||+|+||
T Consensus 231 ~s~L~~VDLAGsEr~~~~~~~~~~~~E~~~iN~sL~~L~~vi~al~~~-----------~~~~ipyR~SkLT~lL~~~l~ 299 (333)
T cd01371 231 VGKLNLVDLAGSERQSKTGATGDRLKEATKINLSLSALGNVISALVDG-----------KSTHIPYRDSKLTRLLQDSLG 299 (333)
T ss_pred EEEEEEEECCCCCcccccCCchhhhHhHhhhhhHHHHHHHHHHHHHhC-----------CCCcCCCccCHHHHHHHHhcC
Confidence 799999999999999999999999999999999999999999999862 456999999999999999999
Q ss_pred CCcceeeeeccCCCCCCHHHHHHHHHHHHHhhcc
Q psy7270 303 GNSKTAMIAAISPADINYDETLSTLRYADRAKQI 336 (459)
Q Consensus 303 Gns~t~~I~~isp~~~~~~eTlsTL~fa~rak~I 336 (459)
|||+|+||+||+|+..+++||++||+||+|||+|
T Consensus 300 g~s~t~~I~~vsP~~~~~~eTl~TL~fa~r~r~I 333 (333)
T cd01371 300 GNSKTVMCANIGPADYNYDETLSTLRYANRAKNI 333 (333)
T ss_pred CCceEEEEEEeCCccccHHHHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999987
No 14
>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and lo
Probab=100.00 E-value=2.4e-74 Score=577.25 Aligned_cols=303 Identities=39% Similarity=0.604 Sum_probs=266.0
Q ss_pred CcEEEEEcCCCCccccccCCceEEEEcCCeE-EEECCCCCCCCC--CCCceeecceeecCCCCCCCCCCCHHHHHHHHHH
Q psy7270 3 SVKVAVRVRPFNNREISRDCKSIIEMTGNTT-VIINPKLPPESK--DTHKNFNFDYSYYSHDPSASNFATQAMVYSDIGE 79 (459)
Q Consensus 3 ~vkV~vRvRP~~~~E~~~~~~~~v~~~~~~~-~~~~~~~~~~~~--~~~~~f~FD~vf~~~d~~~~~~~sQ~~vy~~~~~ 79 (459)
+|+|+|||||+++.|...+..+++.+.++.. .+..+....... ...+.|.||+||++. ++|++||+.++.
T Consensus 2 ~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~f~FD~vf~~~-------~~q~~vf~~~~~ 74 (322)
T cd01367 2 KITVAVRKRPLNDKELSKGETDVVSCESNPTVTVHEPKTKVDLTKYIEKHTFRFDYVFDEA-------VTNEEVYRSTVK 74 (322)
T ss_pred CeEEEEEcCcCChhhhccCCceEEEECCCCEEEEecCccccccccccCCceEecceEECCC-------CCHHHHHHHHHH
Confidence 7999999999999998888888888888644 444333222211 125789999999875 899999999999
Q ss_pred HHHHHhhcCCceEEEeecCCCCCcceeeccCCCCCCCCChHHHHHHHHHHHHhhccCC-------------ccee-cccC
Q psy7270 80 EMLEHAFEGYNVCIFAYGQTGAGKSYTMMGRQEVEGEEGIIPMICQDLFKRIKDTTND-------------KLKS-RWKN 145 (459)
Q Consensus 80 plv~~~l~G~n~ti~aYGqTgSGKT~Tm~G~~~~~~~~Giipr~~~~lF~~i~~~~~~-------------~~~~-~~~~ 145 (459)
|+|+.+++|||+||||||||||||||||+|+.. ++|||||++++||+.+...... .+.+ ....
T Consensus 75 plv~~~~~G~n~~i~ayGqtGSGKTyTm~G~~~---~~Glipr~~~~lf~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~ 151 (322)
T cd01367 75 PLIPHVFEGGVATCFAYGQTGSGKTYTMLGDEN---QEGLYALAARDIFRLLAQPNDDLGVTVSFFEIYGGKLFDLLNDR 151 (322)
T ss_pred HHHHHHhCCCceEEEeccCCCCCCceEecCcCC---cCccHHHHHHHHHHHHhccccccEEEEEEEeeecCchhhhccCc
Confidence 999999999999999999999999999999864 5999999999999999764311 1111 1245
Q ss_pred CcceEeeeCCCCceecCCccccccCHHHHHHHHHHHhhccccccccCCCCCCCceEEEEEEEEEeeecCCCCccceeEec
Q psy7270 146 SNLRVREHPLLGPYVEDLSKLAVTCYRDIHDLIDEGNKARTVAATNMNETSSRSHAVFTIFFTQQAVDDMTDLTTEKVSK 225 (459)
Q Consensus 146 ~~l~i~e~~~~g~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~~~~~~~s~ 225 (459)
..+.+++++.++++|.|++++.|.|++|++.+|..|.++|.+++|.+|..|||||+||+|+|.+... ....|+
T Consensus 152 ~~l~i~~~~~~~~~v~~l~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~-------~~~~s~ 224 (322)
T cd01367 152 KRLSVLEDGKGNVQIVGLTEKPVTSVDELLELIESGNSLRTTGSTGANDQSSRSHAILQIILKNKKL-------NKLLGK 224 (322)
T ss_pred cceeEEEcCCCCEEeCCCEEEEeCCHHHHHHHHHHHhcccccccCcCCCCcccceEEEEEEEEEecC-------CeeEEE
Confidence 6799999999999999999999999999999999999999999999999999999999999998643 345699
Q ss_pred eeeeccCCCccccCCC-CcccchhhhhhhhHhHHHHHHHHHHHHhhhhhhhhhhhcCCCCCccCCCCcchhhhhhccCCC
Q psy7270 226 ISLVDLAGSERADSTG-AKGTRLKEGANINKSLTTLGKVISALAEISAVQHVAKKKKKADFIPYRDSVLTWLLRENLGGN 304 (459)
Q Consensus 226 L~~VDLAGsEr~~~~~-~~g~r~~E~~~IN~SL~~L~~vI~aL~~~~~~~~~~~~~~~~~~ipyRdSkLT~lL~dsLgGn 304 (459)
|+||||||||+...++ ..+.+++|+.+||+||++|++||.+|++ ...||||||||||+||+|+||||
T Consensus 225 l~~vDLAGsE~~~~~~~~~~~~~~e~~~IN~SL~~L~~vi~al~~------------~~~~iPyRdSkLT~lL~~~L~g~ 292 (322)
T cd01367 225 LSFIDLAGSERGADTSEHDRQTRKEGAEINKSLLALKECIRALAS------------NKAHVPFRGSKLTQVLRDSFIGN 292 (322)
T ss_pred EEEeecCCccccccccccchhhHHhHhHHhHHHHHHHHHHHHHhc------------CCCcCCCccCHHHHHHHHhhCCC
Confidence 9999999999998765 5689999999999999999999999986 45899999999999999999999
Q ss_pred cceeeeeccCCCCCCHHHHHHHHHHHHHhh
Q psy7270 305 SKTAMIAAISPADINYDETLSTLRYADRAK 334 (459)
Q Consensus 305 s~t~~I~~isp~~~~~~eTlsTL~fa~rak 334 (459)
|+|+||+||||+..+++||++||+||+|+|
T Consensus 293 ~~t~~I~~vsp~~~~~~eTl~tL~fa~r~k 322 (322)
T cd01367 293 SKTVMIATISPSASSCEHTLNTLRYADRVK 322 (322)
T ss_pred CeEEEEEEeCCchhhHHHHHHHHHHHHhhC
Confidence 999999999999999999999999999986
No 15
>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-c
Probab=100.00 E-value=1.2e-73 Score=573.71 Aligned_cols=308 Identities=44% Similarity=0.690 Sum_probs=276.0
Q ss_pred CCCcEEEEEcCCCCccccccCCceEEEEcCCeEEEECCCCCCCCCCCCceeecceeecCCCCCCCCCCCHHHHHHHHHHH
Q psy7270 1 MSSVKVAVRVRPFNNREISRDCKSIIEMTGNTTVIINPKLPPESKDTHKNFNFDYSYYSHDPSASNFATQAMVYSDIGEE 80 (459)
Q Consensus 1 m~~vkV~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~f~FD~vf~~~d~~~~~~~sQ~~vy~~~~~p 80 (459)
|.+|+|+|||||++..|...+..+++.+.+++.+.+... ...+.|.||+||++. ++|++||+.++.|
T Consensus 1 ~~~i~V~vRvRP~~~~e~~~~~~~~v~~~~~~~v~~~~~------~~~~~f~FD~vf~~~-------~~q~~vy~~~~~~ 67 (325)
T cd01369 1 ECNIKVVCRFRPLNEKEELRGSKSIVKFPGEDTVSIAGS------DDGKTFSFDRVFPPN-------TTQEDVYNFVAKP 67 (325)
T ss_pred CCCeEEEEEcCcCChhhhccCCceEEEEcCCCEEEecCC------CCceEEEcCeEECCC-------CCHHHHHHHHHHH
Confidence 578999999999999998788888888888866666543 235789999999875 8999999999999
Q ss_pred HHHHhhcCCceEEEeecCCCCCcceeeccCCCCCCCCChHHHHHHHHHHHHhhccCC---------------cceec--c
Q psy7270 81 MLEHAFEGYNVCIFAYGQTGAGKSYTMMGRQEVEGEEGIIPMICQDLFKRIKDTTND---------------KLKSR--W 143 (459)
Q Consensus 81 lv~~~l~G~n~ti~aYGqTgSGKT~Tm~G~~~~~~~~Giipr~~~~lF~~i~~~~~~---------------~~~~~--~ 143 (459)
+|+++++|+|+||||||+|||||||||+|+......+||+||++++||+.+.+.... .+.++ .
T Consensus 68 ~v~~~~~G~n~~i~ayG~tgSGKT~Tm~G~~~~~~~~Giipr~~~~Lf~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~ 147 (325)
T cd01369 68 IVDDVLNGYNGTIFAYGQTGSGKTYTMEGPPGDPELKGIIPRIVHDIFEHISSMDENLEFHVKVSYLEIYMEKIRDLLDV 147 (325)
T ss_pred HHHHHHcCccceEEEeCCCCCCceEEecCCCCccccCChHHHHHHHHHHHHhhccCCceEEEEEEEEEEECCChhhcccC
Confidence 999999999999999999999999999999876668999999999999998765322 11111 2
Q ss_pred cCCcceEeeeCCCCceecCCccccccCHHHHHHHHHHHhhccccccccCCCCCCCceEEEEEEEEEeeecCCCCccceeE
Q psy7270 144 KNSNLRVREHPLLGPYVEDLSKLAVTCYRDIHDLIDEGNKARTVAATNMNETSSRSHAVFTIFFTQQAVDDMTDLTTEKV 223 (459)
Q Consensus 144 ~~~~l~i~e~~~~g~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~~~~~~~ 223 (459)
....+.+++++..|++++|++++.|.|++|++.+|..|.++|.+++|.+|..|||||+||+|+|.+..... .....
T Consensus 148 ~~~~l~i~~~~~~~~~v~gl~~~~v~s~~e~~~~i~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~----~~~~~ 223 (325)
T cd01369 148 SKDNLQVHEDKNRGVYVKGLTERFVSSPEEVLEVINEGKSNRAVASTNMNEESSRSHSIFLITLKQENVET----GSKKR 223 (325)
T ss_pred ccCCceEEEcCCCCEEEcCCEEEEcCCHHHHHHHHHHHHhhcccccCcCCCccccccEEEEEEEEEEecCC----CCEEE
Confidence 34678999999999999999999999999999999999999999999999999999999999999875432 33467
Q ss_pred eceeeeccCCCccccCCCCcccchhhhhhhhHhHHHHHHHHHHHHhhhhhhhhhhhcCCCCCccCCCCcchhhhhhccCC
Q psy7270 224 SKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEISAVQHVAKKKKKADFIPYRDSVLTWLLRENLGG 303 (459)
Q Consensus 224 s~L~~VDLAGsEr~~~~~~~g~r~~E~~~IN~SL~~L~~vI~aL~~~~~~~~~~~~~~~~~~ipyRdSkLT~lL~dsLgG 303 (459)
|+|+||||||||+..++++.|.+++|+..||+||++|++||.+|++. ...||||||||||+||+|+|||
T Consensus 224 s~l~~VDLAGsE~~~~~~~~~~~~~e~~~in~sl~~L~~vi~aL~~~-----------~~~~vpyR~S~LT~lL~~~L~g 292 (325)
T cd01369 224 GKLFLVDLAGSEKVSKTGAEGQTLEEAKKINKSLSALGNVINALTDG-----------KSTHIPYRDSKLTRILQDSLGG 292 (325)
T ss_pred EEEEEEECCCCCcccccCCcchhHHHHHHHhHHHHHHHHHHHHHHcC-----------CCCcCCCccCHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999863 3489999999999999999999
Q ss_pred CcceeeeeccCCCCCCHHHHHHHHHHHHHhhcc
Q psy7270 304 NSKTAMIAAISPADINYDETLSTLRYADRAKQI 336 (459)
Q Consensus 304 ns~t~~I~~isp~~~~~~eTlsTL~fa~rak~I 336 (459)
||+|+||+||||+..+++||++||+||+|||+|
T Consensus 293 ~s~t~~I~~vsp~~~~~~eTl~TL~~a~r~~~i 325 (325)
T cd01369 293 NSRTTLIICCSPSSYNESETLSTLRFGARAKTI 325 (325)
T ss_pred CCeEEEEEEeCCccccHHHHHHHHHHHHHhhcC
Confidence 999999999999999999999999999999986
No 16
>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through
Probab=100.00 E-value=9.3e-73 Score=565.26 Aligned_cols=298 Identities=39% Similarity=0.568 Sum_probs=260.2
Q ss_pred CcEEEEEcCCCCccccccCCceEEEEcCC------eEEEECCCCCCCCCCCCceeecceeecCCCCCCCCCCCHHHHHHH
Q psy7270 3 SVKVAVRVRPFNNREISRDCKSIIEMTGN------TTVIINPKLPPESKDTHKNFNFDYSYYSHDPSASNFATQAMVYSD 76 (459)
Q Consensus 3 ~vkV~vRvRP~~~~E~~~~~~~~v~~~~~------~~~~~~~~~~~~~~~~~~~f~FD~vf~~~d~~~~~~~sQ~~vy~~ 76 (459)
+|+|+|||||+.+.|. +...++...+. .+.+.++.. ....+.|.||+||++. ++|++||+.
T Consensus 1 ~i~V~vRvRP~~~~e~--~~~~~v~~~~~~~~~~~~v~~~~~~~----~~~~~~f~FD~vf~~~-------~~q~~vy~~ 67 (319)
T cd01376 1 NVRVVVRVRPFLDCEE--DSSSCVRGIDSDQGQAKSVEIENPRN----RGETKKYQFDAFYGTE-------CTQEDIFSR 67 (319)
T ss_pred CcEEEEEeCcCCcccc--CCCceEEEeCCCCCcceEEEEeCCCC----CCCccEEecCeEECCC-------CCHHHHHHH
Confidence 6999999999998883 33344444332 444444421 2235789999999765 899999999
Q ss_pred HHHHHHHHhhcCCceEEEeecCCCCCcceeeccCCCCCCCCChHHHHHHHHHHHHhhccC-------------Ccceecc
Q psy7270 77 IGEEMLEHAFEGYNVCIFAYGQTGAGKSYTMMGRQEVEGEEGIIPMICQDLFKRIKDTTN-------------DKLKSRW 143 (459)
Q Consensus 77 ~~~plv~~~l~G~n~ti~aYGqTgSGKT~Tm~G~~~~~~~~Giipr~~~~lF~~i~~~~~-------------~~~~~~~ 143 (459)
++.|+|+.+++|||+||||||||||||||||+|+.. ++|||||++++||+.+..... +.+.++.
T Consensus 68 ~~~plv~~~~~G~n~~i~ayG~tgSGKTyTm~G~~~---~~Glipr~~~~Lf~~~~~~~~~~~v~~S~~EIy~e~v~DLL 144 (319)
T cd01376 68 EVKPIVPHLLSGQNATVFAYGSTGAGKTHTMLGDPN---EPGLIPRTLSDLLRMGRKQAWTGAFSMSYYEIYNEKVYDLL 144 (319)
T ss_pred HHHHHHHHHhCCCceEEEEECCCCCCCcEEEeCCcC---ccchHHHHHHHHHHHHhhccccceEEEEEEEEECCEeeEcc
Confidence 999999999999999999999999999999999865 699999999999998865421 1222222
Q ss_pred --cCCcceEeeeCCCCceecCCccccccCHHHHHHHHHHHhhccccccccCCCCCCCceEEEEEEEEEeeecCCCCccce
Q psy7270 144 --KNSNLRVREHPLLGPYVEDLSKLAVTCYRDIHDLIDEGNKARTVAATNMNETSSRSHAVFTIFFTQQAVDDMTDLTTE 221 (459)
Q Consensus 144 --~~~~l~i~e~~~~g~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~~~~~ 221 (459)
....+.+++++.+++++.|++++.|.+++|+..+|..|.++|.+++|.+|..|||||+||+|+|.+.... ..
T Consensus 145 ~~~~~~l~i~~~~~~~~~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~------~~ 218 (319)
T cd01376 145 EPAKKELPIREDKDGNILIVGLTSKPIKSMAEFEEAYIPASKNRTVAATKLNDNSSRSHAVLRIKVTQPASN------IQ 218 (319)
T ss_pred CCCCCCceEEEcCCCCEEeeCCEEEEeCCHHHHHHHHHHHHhhhccccCcCCCccCCCeEEEEEEEEEECCC------ce
Confidence 2467999999999999999999999999999999999999999999999999999999999999886432 24
Q ss_pred eEeceeeeccCCCccccCCCCcccchhhhhhhhHhHHHHHHHHHHHHhhhhhhhhhhhcCCCCCccCCCCcchhhhhhcc
Q psy7270 222 KVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEISAVQHVAKKKKKADFIPYRDSVLTWLLRENL 301 (459)
Q Consensus 222 ~~s~L~~VDLAGsEr~~~~~~~g~r~~E~~~IN~SL~~L~~vI~aL~~~~~~~~~~~~~~~~~~ipyRdSkLT~lL~dsL 301 (459)
..|+|+||||||||+...++..|.+++|+..||+||++|++||.+|+. +..|||||+||||+||+|+|
T Consensus 219 ~~s~l~~VDLAGsE~~~~~~~~g~~~~e~~~iN~Sl~~L~~vi~aL~~------------~~~~ipyr~S~LT~lL~~~L 286 (319)
T cd01376 219 LEGKLNLIDLAGSEDNRRTGNEGIRLKESAAINSSLFVLSKVVDALNK------------GLPRIPYRESKLTRLLQDSL 286 (319)
T ss_pred EEEEEEEEECCCCCcccccCCccchhhhhhhhhhhHHHHHHHHHHHhc------------CCCcCCCccCHHHHHHHHhc
Confidence 579999999999999999999999999999999999999999999986 46899999999999999999
Q ss_pred CCCcceeeeeccCCCCCCHHHHHHHHHHHHHhh
Q psy7270 302 GGNSKTAMIAAISPADINYDETLSTLRYADRAK 334 (459)
Q Consensus 302 gGns~t~~I~~isp~~~~~~eTlsTL~fa~rak 334 (459)
||||+|+||+||||+..+++||++||+||+|||
T Consensus 287 ~g~s~t~~i~~vsp~~~~~~eTl~TL~fa~r~~ 319 (319)
T cd01376 287 GGGSRCIMVANIAPERSFYQDTLSTLNFASRSK 319 (319)
T ss_pred CCCccEEEEEEeCCchhhHHHHHHHHHHHHhhC
Confidence 999999999999999999999999999999986
No 17
>cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to
Probab=100.00 E-value=1.5e-72 Score=564.61 Aligned_cols=305 Identities=44% Similarity=0.676 Sum_probs=269.5
Q ss_pred CcEEEEEcCCCCccccccCCceEEEEcCCeEEEECCCCCCCCCCCCceeecceeecCCCCCCCCCCCHHHHHHHHHHHHH
Q psy7270 3 SVKVAVRVRPFNNREISRDCKSIIEMTGNTTVIINPKLPPESKDTHKNFNFDYSYYSHDPSASNFATQAMVYSDIGEEML 82 (459)
Q Consensus 3 ~vkV~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~f~FD~vf~~~d~~~~~~~sQ~~vy~~~~~plv 82 (459)
+|+|+||+||+...|.. +..+++.++++..+++.+. ...+.|.||+||++. ++|++||+.++.|+|
T Consensus 1 ~V~V~vRvRP~~~~e~~-~~~~~~~~~~~~~v~~~~~------~~~~~f~fd~vf~~~-------~~q~~vy~~~~~p~v 66 (321)
T cd01374 1 KIKVSVRVRPLNPRESD-NEQVAWSIDNDNTISLEES------TPGQSFTFDRVFGGE-------STNREVYERIAKPVV 66 (321)
T ss_pred CeEEEEEcCcCCccccc-CCcceEEECCCCEEEEcCC------CCCeEEecCeEECCC-------CCHHHHHHHHHHHHH
Confidence 69999999999998874 4567888887755555432 246899999999876 899999999999999
Q ss_pred HHhhcCCceEEEeecCCCCCcceeeccCCCCCCCCChHHHHHHHHHHHHhhccCCcce--------------ec--ccCC
Q psy7270 83 EHAFEGYNVCIFAYGQTGAGKSYTMMGRQEVEGEEGIIPMICQDLFKRIKDTTNDKLK--------------SR--WKNS 146 (459)
Q Consensus 83 ~~~l~G~n~ti~aYGqTgSGKT~Tm~G~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~--------------~~--~~~~ 146 (459)
+++++|+|+||||||||||||||||+|+.. ++|||||++++||..+.+.....+. ++ ....
T Consensus 67 ~~~l~G~n~~i~ayG~tgSGKT~T~~G~~~---~~Gli~r~~~~lf~~~~~~~~~~~~v~~S~~Eiy~e~v~DLL~~~~~ 143 (321)
T cd01374 67 RSALEGYNGTIFAYGQTSSGKTFTMSGDEQ---EPGIIPLAVRDIFQRIQDTPDREFLLRVSYLEIYNEKIKDLLSPSPQ 143 (321)
T ss_pred HHHHCCCceeEEeecCCCCCCceeccCCCC---CCchHHHHHHHHHHHHhcccCceEEEEEEEEEEEcCEeEEccCCCCC
Confidence 999999999999999999999999999864 5999999999999999765543221 11 2236
Q ss_pred cceEeeeCCCCceecCCccccccCHHHHHHHHHHHhhccccccccCCCCCCCceEEEEEEEEEeeecCCCCccceeEece
Q psy7270 147 NLRVREHPLLGPYVEDLSKLAVTCYRDIHDLIDEGNKARTVAATNMNETSSRSHAVFTIFFTQQAVDDMTDLTTEKVSKI 226 (459)
Q Consensus 147 ~l~i~e~~~~g~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~~~~~~~s~L 226 (459)
.+.+++++..|+++.|++++.|.|++|++.+|..|.++|.+++|.+|..|||||+||+|+|.+...... .......|+|
T Consensus 144 ~l~i~~~~~~~~~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~-~~~~~~~s~l 222 (321)
T cd01374 144 ELRIREDPNKGVVVAGLTEEIVTSPEHLLQLIARGEKNRHVGETDFNERSSRSHTIFQLTIESRERGDS-ESGTVRVSTL 222 (321)
T ss_pred CceEEECCCCCEEeCCceEEEeCCHHHHHHHHHHHHhccccccCcCCCccccccEEEEEEEEEEecCCC-CCCcEEEEEE
Confidence 899999999999999999999999999999999999999999999999999999999999998764431 2234567999
Q ss_pred eeeccCCCccccCCCCcccchhhhhhhhHhHHHHHHHHHHHHhhhhhhhhhhhcCCCCCccCCCCcchhhhhhccCCCcc
Q psy7270 227 SLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEISAVQHVAKKKKKADFIPYRDSVLTWLLRENLGGNSK 306 (459)
Q Consensus 227 ~~VDLAGsEr~~~~~~~g~r~~E~~~IN~SL~~L~~vI~aL~~~~~~~~~~~~~~~~~~ipyRdSkLT~lL~dsLgGns~ 306 (459)
+||||||||+....+ .+.+++|+.+||+||++|++||.+|++. .+..|||||+||||+||+|+|||||+
T Consensus 223 ~~vDLAGsE~~~~~~-~~~~~~e~~~iN~Sl~~L~~vi~al~~~----------~~~~~vpyR~SkLT~lL~~~L~g~s~ 291 (321)
T cd01374 223 NLIDLAGSERASQTG-AGERRKEGSFINKSLLTLGTVISKLSEG----------KNSGHIPYRDSKLTRILQPSLSGNAR 291 (321)
T ss_pred EEEECCCCCccccCC-CCccccccchhhhHHHHHHHHHHHHHhc----------CCCCcCCCcCCHHHHHHHHhcCCCce
Confidence 999999999999998 8999999999999999999999999973 12689999999999999999999999
Q ss_pred eeeeeccCCCCCCHHHHHHHHHHHHHhhcc
Q psy7270 307 TAMIAAISPADINYDETLSTLRYADRAKQI 336 (459)
Q Consensus 307 t~~I~~isp~~~~~~eTlsTL~fa~rak~I 336 (459)
|+||+||||...+++||++||+||+||++|
T Consensus 292 t~~i~~vsp~~~~~~eTl~TL~~a~r~~~i 321 (321)
T cd01374 292 TAIICTISPASSHVEETLNTLKFASRAKKV 321 (321)
T ss_pred EEEEEEeCCccccHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999986
No 18
>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain,
Probab=100.00 E-value=1.3e-72 Score=570.05 Aligned_cols=311 Identities=43% Similarity=0.682 Sum_probs=271.9
Q ss_pred CCcEEEEEcCCCCccccccCCceEEEEcCC-eEEEECCCCCCCCCCCCceeecceeecCCCCCCCCCCCHHHHHHHHHHH
Q psy7270 2 SSVKVAVRVRPFNNREISRDCKSIIEMTGN-TTVIINPKLPPESKDTHKNFNFDYSYYSHDPSASNFATQAMVYSDIGEE 80 (459)
Q Consensus 2 ~~vkV~vRvRP~~~~E~~~~~~~~v~~~~~-~~~~~~~~~~~~~~~~~~~f~FD~vf~~~d~~~~~~~sQ~~vy~~~~~p 80 (459)
.+|+|+||+||++..|...+...++.+.+. ..+++.+ .+.|.||+||+++ ++|++||+.++.|
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~~---------~~~f~FD~vf~~~-------~~q~~vy~~~~~p 64 (341)
T cd01372 1 SSVRVAVRVRPLLPKELLEGCQVCVSVVPGEPQVTVGT---------DKSFTFDYVFDPS-------TSQEEVYNTCVAP 64 (341)
T ss_pred CCeEEEEECCCCCchhcccCCCeEEEEeCCCCEEEecC---------CcEEeccccCCCC-------CCHHHHHHHHHHH
Confidence 379999999999999988777777776554 3333322 4789999999875 8999999999999
Q ss_pred HHHHhhcCCceEEEeecCCCCCcceeeccCCCC---CCCCChHHHHHHHHHHHHhhccC-C--------------cceec
Q psy7270 81 MLEHAFEGYNVCIFAYGQTGAGKSYTMMGRQEV---EGEEGIIPMICQDLFKRIKDTTN-D--------------KLKSR 142 (459)
Q Consensus 81 lv~~~l~G~n~ti~aYGqTgSGKT~Tm~G~~~~---~~~~Giipr~~~~lF~~i~~~~~-~--------------~~~~~ 142 (459)
+|+.+++|||+||||||||||||||||+|+... ..++|||||++++||+.+..... . .+.++
T Consensus 65 lv~~~~~G~n~~i~ayG~tgSGKT~Tm~G~~~~~~~~~~~Giipr~~~~LF~~~~~~~~~~~~~v~vS~~EIy~e~v~DL 144 (341)
T cd01372 65 LVDGLFEGYNATVLAYGQTGSGKTYTMGTAFTASEDEEEVGIIPRAIQHIFKKIDEKKDEPDFQLKVSFLELYNEEVRDL 144 (341)
T ss_pred HHHHHhCCCccceeeecCCCCCCcEEecCCCccccccccCChHHHHHHHHHHHHHhccccceEEEEEEEEEeECCeeecC
Confidence 999999999999999999999999999998642 46799999999999999986543 1 11111
Q ss_pred cc-----CCcceEeeeCCCCceecCCccccccCHHHHHHHHHHHhhccccccccCCCCCCCceEEEEEEEEEeeecCCC-
Q psy7270 143 WK-----NSNLRVREHPLLGPYVEDLSKLAVTCYRDIHDLIDEGNKARTVAATNMNETSSRSHAVFTIFFTQQAVDDMT- 216 (459)
Q Consensus 143 ~~-----~~~l~i~e~~~~g~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~- 216 (459)
.. ...+.+++++.++++|.|++++.|.+++|++.+|..|.++|.+++|.+|..|||||+||+|+|.+.......
T Consensus 145 L~~~~~~~~~l~i~e~~~~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~~~~~ 224 (341)
T cd01372 145 LSPSTSEKSPIQIREDSKGNIIIVGLTEVTVNSAQEVMSCLEQGSLSRTTASTAMNSQSSRSHAIFTITLEQTRKNGPIA 224 (341)
T ss_pred CCCcccCCCCceEEECCCCCEecCCCEEEEECCHHHHHHHHHHHHHhcccccccCCCccCcCcEEEEEEEEEEecCCccc
Confidence 11 457999999999999999999999999999999999999999999999999999999999999998764211
Q ss_pred -----CccceeEeceeeeccCCCccccCCCCcccchhhhhhhhHhHHHHHHHHHHHHhhhhhhhhhhhcCCCCCccCCCC
Q psy7270 217 -----DLTTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEISAVQHVAKKKKKADFIPYRDS 291 (459)
Q Consensus 217 -----~~~~~~~s~L~~VDLAGsEr~~~~~~~g~r~~E~~~IN~SL~~L~~vI~aL~~~~~~~~~~~~~~~~~~ipyRdS 291 (459)
.......|+|+||||||||+..++++.|.+++|+..||+||++|++||.+|+... ++..|||||+|
T Consensus 225 ~~~~~~~~~~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~in~sl~aL~~vi~al~~~~---------~~~~~ipyR~S 295 (341)
T cd01372 225 PMSGDDKNSTLTSKFHFVDLAGSERLKKTGATGDRLKEGISINSGLLALGNVISALGDES---------KKGSHVPYRDS 295 (341)
T ss_pred cccccCCCceeeEEEEEEECCCCcccccccCchhHhHHHHHHhHHHHHHHHHHHHHHhcC---------CCCCCCCCccc
Confidence 2234567999999999999999999999999999999999999999999998641 14589999999
Q ss_pred cchhhhhhccCCCcceeeeeccCCCCCCHHHHHHHHHHHHHhhccc
Q psy7270 292 VLTWLLRENLGGNSKTAMIAAISPADINYDETLSTLRYADRAKQIV 337 (459)
Q Consensus 292 kLT~lL~dsLgGns~t~~I~~isp~~~~~~eTlsTL~fa~rak~I~ 337 (459)
|||+||+|+|||||+|+||+||||+..+++||++||+||+|||+|+
T Consensus 296 ~LT~lL~~~Lgg~s~t~~I~~vsp~~~~~~eTl~tL~~a~~~~~ik 341 (341)
T cd01372 296 KLTRLLQDSLGGNSHTLMIACVSPADSNFEETLNTLKYANRARNIK 341 (341)
T ss_pred HHHHHHHHhcCCCceEEEEEEeCCChhhHHHHHHHHHHHHHhccCC
Confidence 9999999999999999999999999999999999999999999985
No 19
>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80
Probab=100.00 E-value=3.5e-71 Score=557.05 Aligned_cols=308 Identities=38% Similarity=0.545 Sum_probs=261.4
Q ss_pred CcEEEEEcCCCCccccccCCceEEEEcCCeEEEECCCCCCC----CCCCCceeecceeecCCCCCCCCCCCHHHHHHHHH
Q psy7270 3 SVKVAVRVRPFNNREISRDCKSIIEMTGNTTVIINPKLPPE----SKDTHKNFNFDYSYYSHDPSASNFATQAMVYSDIG 78 (459)
Q Consensus 3 ~vkV~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~~~~~----~~~~~~~f~FD~vf~~~d~~~~~~~sQ~~vy~~~~ 78 (459)
+|||+||+||+...+. ....+..++..+.+..|..... .....+.|.||+||+ + ++|++||+.++
T Consensus 1 ~i~V~vRvRP~~~~~~---~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~f~FD~vf~-------~-~~q~~vy~~~~ 69 (334)
T cd01375 1 TIQVFVRVRPTPTKQG---SSIKLGPDGKSVSSNLPKDLVRGVVNNQQEDFSFKFDGVFH-------N-ASQEEVYETVA 69 (334)
T ss_pred CeEEEEECCCCCCCCC---ccEEEcCCCCEEEEecccccccccccCCcCceEEEcCcccC-------C-CCHHHHHHHHH
Confidence 5899999999997432 1222333344445544443211 122346799999995 3 79999999999
Q ss_pred HHHHHHhhcCCceEEEeecCCCCCcceeeccCCCCCCCCChHHHHHHHHHHHHhhccCCcc--------------eecc-
Q psy7270 79 EEMLEHAFEGYNVCIFAYGQTGAGKSYTMMGRQEVEGEEGIIPMICQDLFKRIKDTTNDKL--------------KSRW- 143 (459)
Q Consensus 79 ~plv~~~l~G~n~ti~aYGqTgSGKT~Tm~G~~~~~~~~Giipr~~~~lF~~i~~~~~~~~--------------~~~~- 143 (459)
.|+|+++++|+|+||||||||||||||||+|+.....++|||||++++||+.+.......+ .++.
T Consensus 70 ~p~v~~~~~G~n~~i~ayG~tgSGKTyTm~G~~~~~~~~Glipr~~~~lf~~~~~~~~~~~~v~~S~~Eiy~e~v~DLL~ 149 (334)
T cd01375 70 KPVVDSALDGYNGTIFAYGQTGAGKTFTMTGGTESYKDRGLIPRALEQVFREVAMRATKTYTVHVSYLEIYNEQLYDLLG 149 (334)
T ss_pred HHHHHHHhCCCccceeeecCCCCCCeEEccCCCCcccCCchHHHHHHHHHHHHHhccCcceEEEEEEEEEECCEeecCCC
Confidence 9999999999999999999999999999999876556799999999999999976553321 1111
Q ss_pred -------cCCcceEeeeCCCCceecCCccccccCHHHHHHHHHHHhhccccccccCCCCCCCceEEEEEEEEEeeecCCC
Q psy7270 144 -------KNSNLRVREHPLLGPYVEDLSKLAVTCYRDIHDLIDEGNKARTVAATNMNETSSRSHAVFTIFFTQQAVDDMT 216 (459)
Q Consensus 144 -------~~~~l~i~e~~~~g~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~ 216 (459)
....+.+++++..+++|+|++++.|.+++|++.+|..|.++|.+++|.+|..|||||+||+|+|.+......
T Consensus 150 ~~~~~~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~~~~g~~~R~~~~t~~n~~sSRSH~i~~l~v~~~~~~~~- 228 (334)
T cd01375 150 DTPEALESLPAVTILEDSEQNIHVKGLSLHSATTEEEALNLLFLGETNRTIAETSMNQASSRSHCIFTIHLESRSREAG- 228 (334)
T ss_pred CCccccccCCceEEEEcCCCCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccCcCcCCcCcCeEEEEEEEEEEecCCC-
Confidence 124689999999999999999999999999999999999999999999999999999999999998754332
Q ss_pred CccceeEeceeeeccCCCccccCCCCcccchhhhhhhhHhHHHHHHHHHHHHhhhhhhhhhhhcCCCCCccCCCCcchhh
Q psy7270 217 DLTTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEISAVQHVAKKKKKADFIPYRDSVLTWL 296 (459)
Q Consensus 217 ~~~~~~~s~L~~VDLAGsEr~~~~~~~g~r~~E~~~IN~SL~~L~~vI~aL~~~~~~~~~~~~~~~~~~ipyRdSkLT~l 296 (459)
......|+|+|||||||||..+++..+.+++|+..||+||++|++||.+|++. ...||||||||||+|
T Consensus 229 -~~~~~~s~l~~VDLAGsEr~~~~~~~~~~~~e~~~iN~SL~~L~~vi~~l~~~-----------~~~~ipyRdSkLT~l 296 (334)
T cd01375 229 -SEVVRLSKLNLVDLAGSERVSKTGVSGQVLKEAKYINKSLSFLEQVINALSEK-----------ARTHVPYRNSKLTHV 296 (334)
T ss_pred -CCceEEEEEEEEECCCCCccccccCchhhhhhhhhhhhhHHHHHHHHHHHHhC-----------CCCCCCCcccHHHHH
Confidence 23456799999999999999999999999999999999999999999999863 348999999999999
Q ss_pred hhhccCCCcceeeeeccCCCCCCHHHHHHHHHHHHHhh
Q psy7270 297 LRENLGGNSKTAMIAAISPADINYDETLSTLRYADRAK 334 (459)
Q Consensus 297 L~dsLgGns~t~~I~~isp~~~~~~eTlsTL~fa~rak 334 (459)
|+|+|||||+|+||+||||+..+++||++||+||+|++
T Consensus 297 L~d~Lgg~~~t~~I~~vsp~~~~~~eTl~TL~fa~r~~ 334 (334)
T cd01375 297 LRDSLGGNCKTVMLATIWVEPSNLDETLSTLRFAQRVA 334 (334)
T ss_pred HHHhcCCCceEEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999985
No 20
>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for mi
Probab=100.00 E-value=1e-69 Score=546.33 Aligned_cols=304 Identities=41% Similarity=0.680 Sum_probs=267.4
Q ss_pred CCcEEEEEcCCCCccccccCCceEEEEcCC--eEEEECCCCCCCCCCCCceeecceeecCCCCCCCCCCCHHHHHHHHHH
Q psy7270 2 SSVKVAVRVRPFNNREISRDCKSIIEMTGN--TTVIINPKLPPESKDTHKNFNFDYSYYSHDPSASNFATQAMVYSDIGE 79 (459)
Q Consensus 2 ~~vkV~vRvRP~~~~E~~~~~~~~v~~~~~--~~~~~~~~~~~~~~~~~~~f~FD~vf~~~d~~~~~~~sQ~~vy~~~~~ 79 (459)
|+|+|+||+||+...|. ....+++.+.++ ..+.+... ....+.|.||+||++. ++|++||+.+ .
T Consensus 2 ~~i~V~vRirP~~~~e~-~~~~~~~~~~~~~~~~i~~~~~-----~~~~~~f~fD~vf~~~-------~~q~~v~~~v-~ 67 (329)
T cd01366 2 GNIRVFCRVRPLLPSES-TEYSSVISFPDEDGGTIELSKG-----TGKKKSFSFDRVFDPD-------ASQEDVFEEV-S 67 (329)
T ss_pred CCEEEEEEcCcCCcccc-CCCccEEEEcCCCceEEEEeCC-----CCCceEEecCEEECCC-------CCHHHHHHHH-H
Confidence 68999999999998876 344456666654 55554332 2345789999999765 8999999985 8
Q ss_pred HHHHHhhcCCceEEEeecCCCCCcceeeccCCCCCCCCChHHHHHHHHHHHHhhccCCc----------------ceecc
Q psy7270 80 EMLEHAFEGYNVCIFAYGQTGAGKSYTMMGRQEVEGEEGIIPMICQDLFKRIKDTTNDK----------------LKSRW 143 (459)
Q Consensus 80 plv~~~l~G~n~ti~aYGqTgSGKT~Tm~G~~~~~~~~Giipr~~~~lF~~i~~~~~~~----------------~~~~~ 143 (459)
|+|+++++|+|+||||||+|||||||||+|+.. ++||+||++++||+.+....... +.++.
T Consensus 68 p~v~~~~~G~~~~i~ayG~tgSGKT~tl~G~~~---~~Gli~r~~~~lf~~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL 144 (329)
T cd01366 68 PLVQSALDGYNVCIFAYGQTGSGKTYTMEGPPE---NPGIIPRALEQLFNTAEELKEKGWSYTITASMLEIYNETIRDLL 144 (329)
T ss_pred HHHHHHhCCCceEEEEeCCCCCCCcEEecCCCC---CCCcHHHHHHHHHHHHHhhhccCceEEEEEEEEEEECCEeEECC
Confidence 999999999999999999999999999999864 59999999999999987665311 11111
Q ss_pred -----cCCcceEeeeCCCCceecCCccccccCHHHHHHHHHHHhhccccccccCCCCCCCceEEEEEEEEEeeecCCCCc
Q psy7270 144 -----KNSNLRVREHPLLGPYVEDLSKLAVTCYRDIHDLIDEGNKARTVAATNMNETSSRSHAVFTIFFTQQAVDDMTDL 218 (459)
Q Consensus 144 -----~~~~l~i~e~~~~g~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~~ 218 (459)
....+.+++++.+++++.|++++.|.|++|+..+|..|.++|.+++|.+|..|||||+||+|+|.+.....
T Consensus 145 ~~~~~~~~~l~i~~~~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~~---- 220 (329)
T cd01366 145 ATKPAPKKKLEIKHDSKGETYVTNLTEVPVSSPEEVTRLLNLGSKNRSVASTNMNEHSSRSHAVFQLKIRGTNLQT---- 220 (329)
T ss_pred CCCcCCCCceEEEECCCCCEEecCCEEEEeCCHHHHHHHHHHHHhhcccccccccCCCCCccEEEEEEEEEEcCCC----
Confidence 25679999999999999999999999999999999999999999999999999999999999999875432
Q ss_pred cceeEeceeeeccCCCccccCCCCcccchhhhhhhhHhHHHHHHHHHHHHhhhhhhhhhhhcCCCCCccCCCCcchhhhh
Q psy7270 219 TTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEISAVQHVAKKKKKADFIPYRDSVLTWLLR 298 (459)
Q Consensus 219 ~~~~~s~L~~VDLAGsEr~~~~~~~g~r~~E~~~IN~SL~~L~~vI~aL~~~~~~~~~~~~~~~~~~ipyRdSkLT~lL~ 298 (459)
.....|+|+||||||||+..+.++.+.+++|+..||+||++|++||.+|+. +..|||||+||||+||+
T Consensus 221 ~~~~~s~l~~VDLaGsE~~~~~~~~~~~~~e~~~in~Sl~~L~~vl~~l~~------------~~~~ipyr~S~LT~lL~ 288 (329)
T cd01366 221 GEQTRGKLNLVDLAGSERLKKSGATGDRLKEAQAINKSLSALGDVISALRS------------KDSHVPYRNSKLTYLLQ 288 (329)
T ss_pred CcEEEEEEEEEECCCCcccccccccchhhHhHhhhhhHHHHHHHHHHHHhc------------CCCcCCCcccHhHHHHH
Confidence 335679999999999999999999999999999999999999999999986 57899999999999999
Q ss_pred hccCCCcceeeeeccCCCCCCHHHHHHHHHHHHHhhcccc
Q psy7270 299 ENLGGNSKTAMIAAISPADINYDETLSTLRYADRAKQIVC 338 (459)
Q Consensus 299 dsLgGns~t~~I~~isp~~~~~~eTlsTL~fa~rak~I~n 338 (459)
|+|||||+|+||+||||...+++||++||+||+||++|++
T Consensus 289 ~~l~g~~~t~~i~~vsp~~~~~~etl~tL~~a~~~~~i~~ 328 (329)
T cd01366 289 DSLGGNSKTLMFVNISPLESNLSETLCSLRFASRVRSVEL 328 (329)
T ss_pred HhcCCCceEEEEEEeCCchhhHHHHHHHHHHHHHhhcccC
Confidence 9999999999999999999999999999999999999986
No 21
>KOG0239|consensus
Probab=100.00 E-value=2.1e-70 Score=584.62 Aligned_cols=312 Identities=38% Similarity=0.558 Sum_probs=269.0
Q ss_pred CCcEEEEEcCCCCccccccCCceEEEEcCC-eEEEECCCCCCCCCCCCceeecceeecCCCCCCCCCCCHHHHHHHHHHH
Q psy7270 2 SSVKVAVRVRPFNNREISRDCKSIIEMTGN-TTVIINPKLPPESKDTHKNFNFDYSYYSHDPSASNFATQAMVYSDIGEE 80 (459)
Q Consensus 2 ~~vkV~vRvRP~~~~E~~~~~~~~v~~~~~-~~~~~~~~~~~~~~~~~~~f~FD~vf~~~d~~~~~~~sQ~~vy~~~~~p 80 (459)
|+|||+|||||+.+.+.......++...+. .+.+..+... ....++.|.||+||.+. ++|++||.++ .|
T Consensus 314 GnIRV~CRvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~f~fdkVf~p~-------~sQ~~VF~e~-~~ 383 (670)
T KOG0239|consen 314 GNIRVFCRVRPLLPSEKQRLQSKVIDTEEQGEVQVDSPDKG--DKLEPQSFKFDKVFGPL-------ASQDDVFEEV-SP 383 (670)
T ss_pred cCceEEEEecCCCccccccccccccccCCcceeEeecCCCC--CCCccccceeeeecCCc-------ccHHHHHHHH-HH
Confidence 799999999999999887644444444443 2333333322 22233479999999765 9999999997 89
Q ss_pred HHHHhhcCCceEEEeecCCCCCcceeeccCCCCCCCCChHHHHHHHHHHHHhhccCCcceec----------------c-
Q psy7270 81 MLEHAFEGYNVCIFAYGQTGAGKSYTMMGRQEVEGEEGIIPMICQDLFKRIKDTTNDKLKSR----------------W- 143 (459)
Q Consensus 81 lv~~~l~G~n~ti~aYGqTgSGKT~Tm~G~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~~----------------~- 143 (459)
+|.++|+|||+||||||||||||||||.|+ .+.++|||||++++||..+..... .+.|. .
T Consensus 384 lv~S~lDGYnVCIFAYGQTGSGKTyTM~G~--~~~~~Giipral~~lF~~~~~~~~-g~~y~~~~s~~EIYNe~i~DlL~ 460 (670)
T KOG0239|consen 384 LVQSALDGYNVCIFAYGQTGSGKTYTMSGP--TPEDPGIIPRALEKLFRTITSLKS-GWKYDKTVSMLEIYNEAIRDLLS 460 (670)
T ss_pred HHHHHhcCcceeEEEecccCCCccccccCC--CcccCCccHHHHHHHHHHHHhhcc-CceEEeeeehhHHHHHHHHHhcc
Confidence 999999999999999999999999999996 345799999999999999887665 33222 1
Q ss_pred ---cCCcceEeeeCCCCceecCCccccccCHHHHHHHHHHHhhccccccccCCCCCCCceEEEEEEEEEeeecCCCCccc
Q psy7270 144 ---KNSNLRVREHPLLGPYVEDLSKLAVTCYRDIHDLIDEGNKARTVAATNMNETSSRSHAVFTIFFTQQAVDDMTDLTT 220 (459)
Q Consensus 144 ---~~~~l~i~e~~~~g~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~~~~ 220 (459)
....+.|+.++.++.+|.+++.+.|.+.+++..+++.|..+|++++|.+|.+|||||+||+|+|....... ..
T Consensus 461 ~~~~~~k~~I~~~~~~~~~V~~~t~~~V~s~~~v~~ll~~g~~nRsv~~T~~Ne~SSRSH~v~~v~v~g~~~~t----~~ 536 (670)
T KOG0239|consen 461 DESYVGKLEIVDDAEGNLMVPLLTVIKVGSSEEVDILLEIGLSNRSVASTASNERSSRSHLVFRVRIRGINELT----GI 536 (670)
T ss_pred ccccccceeEEEcCCCceecccceEEecCCHHHHHHHHHHhhccccccccccchhhhccceEEEEEEeccccCc----cc
Confidence 13568899999999999999999999999999999999999999999999999999999999998763222 33
Q ss_pred eeEeceeeeccCCCccccCCCCcccchhhhhhhhHhHHHHHHHHHHHHhhhhhhhhhhhcCCCCCccCCCCcchhhhhhc
Q psy7270 221 EKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEISAVQHVAKKKKKADFIPYRDSVLTWLLREN 300 (459)
Q Consensus 221 ~~~s~L~~VDLAGsEr~~~~~~~g~r~~E~~~IN~SL~~L~~vI~aL~~~~~~~~~~~~~~~~~~ipyRdSkLT~lL~ds 300 (459)
...+.|+|||||||||+++++..|+|++|+.+||+||++||+||.||+. +..||||||||||+||+|+
T Consensus 537 ~~~g~l~LVDLAGSER~~~s~~tG~RlkE~Q~INkSLS~LgdVi~AL~~------------k~~HiPyRNSKLT~lLq~s 604 (670)
T KOG0239|consen 537 RVTGVLNLVDLAGSERVSKSGVTGERLKEAQNINKSLSALGDVISALAS------------KRSHIPYRNSKLTQLLQDS 604 (670)
T ss_pred ccccceeEeecccCcccCcCCCchhhhHHHHHhchhhhhhHHHHHHHhh------------cCCCCcccccchHHHhHhh
Confidence 3459999999999999999999999999999999999999999999986 7899999999999999999
Q ss_pred cCCCcceeeeeccCCCCCCHHHHHHHHHHHHHhhccccccee
Q psy7270 301 LGGNSKTAMIAAISPADINYDETLSTLRYADRAKQIVCKAIV 342 (459)
Q Consensus 301 LgGns~t~~I~~isp~~~~~~eTlsTL~fa~rak~I~n~~~~ 342 (459)
|||++||+|+++|||...++.||+++|+||.|++.+...+-.
T Consensus 605 LGG~sKTLmfv~isP~~~~~~Etl~sL~FA~rv~~~~lG~a~ 646 (670)
T KOG0239|consen 605 LGGDSKTLMFVNISPAAAALFETLCSLRFATRVRSVELGSAR 646 (670)
T ss_pred hCCccceeeEEEeCccHHHHhhhhhccchHHHhhceeccccc
Confidence 999999999999999999999999999999999999776544
No 22
>smart00129 KISc Kinesin motor, catalytic domain. ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.
Probab=100.00 E-value=1.1e-68 Score=540.29 Aligned_cols=315 Identities=50% Similarity=0.753 Sum_probs=278.6
Q ss_pred CcEEEEEcCCCCccccccCCceEEEEcCC---eEEEECCCCCCCCCCCCceeecceeecCCCCCCCCCCCHHHHHHHHHH
Q psy7270 3 SVKVAVRVRPFNNREISRDCKSIIEMTGN---TTVIINPKLPPESKDTHKNFNFDYSYYSHDPSASNFATQAMVYSDIGE 79 (459)
Q Consensus 3 ~vkV~vRvRP~~~~E~~~~~~~~v~~~~~---~~~~~~~~~~~~~~~~~~~f~FD~vf~~~d~~~~~~~sQ~~vy~~~~~ 79 (459)
+|+|+|||||+...|...+..+++.+.++ .+.+.++. .....+.|.||+||.+. ++|++||+.++.
T Consensus 1 ~v~v~vRvrP~~~~e~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~~~f~fD~vf~~~-------~~q~~v~~~~~~ 69 (335)
T smart00129 1 NIRVVVRVRPLNKREKSRKSPSVVPFDDKDGKTLNVNSPK----NRKEEKKFTFDKVFGAT-------ASQEDVFEETAA 69 (335)
T ss_pred CcEEEEEcCcCCccchhcCCceEEEEcCCCCCEEEEeCCC----CCCCCeEEecCEEECCC-------CChHHHHHHHHH
Confidence 68999999999999988888888888765 34444332 23456899999999665 899999999999
Q ss_pred HHHHHhhcCCceEEEeecCCCCCcceeeccCCCCCCCCChHHHHHHHHHHHHhhccCC---------------cceec--
Q psy7270 80 EMLEHAFEGYNVCIFAYGQTGAGKSYTMMGRQEVEGEEGIIPMICQDLFKRIKDTTND---------------KLKSR-- 142 (459)
Q Consensus 80 plv~~~l~G~n~ti~aYGqTgSGKT~Tm~G~~~~~~~~Giipr~~~~lF~~i~~~~~~---------------~~~~~-- 142 (459)
|+|+.+++|+|+||||||+|||||||||+|+.. ++||+|+++++||+.+.+.... .+.++
T Consensus 70 p~v~~~~~G~~~~i~~yG~tgSGKT~tl~G~~~---~~Gli~~~~~~Lf~~~~~~~~~~~~~v~~S~~ei~~e~v~DLL~ 146 (335)
T smart00129 70 PLVDSVLEGYNATIFAYGQTGSGKTYTMSGTPD---SPGIIPRALKDLFEKIDKLEEGWQFQVKVSYLEIYNEKIRDLLN 146 (335)
T ss_pred HHHHHHhcCCceeEEEeCCCCCCCceEecCCCC---CCCHHHHHHHHHHHHhhhcccCceEEEEEEEEEEECCEEEECcC
Confidence 999999999999999999999999999999864 5899999999999999765421 11111
Q ss_pred ccCCcceEeeeCCCCceecCCccccccCHHHHHHHHHHHhhccccccccCCCCCCCceEEEEEEEEEeeecCCCCcccee
Q psy7270 143 WKNSNLRVREHPLLGPYVEDLSKLAVTCYRDIHDLIDEGNKARTVAATNMNETSSRSHAVFTIFFTQQAVDDMTDLTTEK 222 (459)
Q Consensus 143 ~~~~~l~i~e~~~~g~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~~~~~~ 222 (459)
.....+.+++++.+++++.|++++.|.|++|+..+|..|.++|.+++|.+|..|||||+||+|+|.+..... ......
T Consensus 147 ~~~~~l~i~~~~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRsH~i~~l~v~~~~~~~--~~~~~~ 224 (335)
T smart00129 147 PSPKKLEIREDKKGGVYVKGLTEISVSSFEEVYNLLEKGNKNRTVAATKMNEESSRSHAVFTITVESKIKNS--SSGSGK 224 (335)
T ss_pred CCCCCcEEEECCCCCEEecCCEEEEeCCHHHHHHHHHHHHhccccccCCCCCCCCcceEEEEEEEEEEecCC--CCCCEE
Confidence 245678999999999999999999999999999999999999999999999999999999999999763332 223456
Q ss_pred EeceeeeccCCCccccCCCCcccchhhhhhhhHhHHHHHHHHHHHHhhhhhhhhhhhcCCCCCccCCCCcchhhhhhccC
Q psy7270 223 VSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEISAVQHVAKKKKKADFIPYRDSVLTWLLRENLG 302 (459)
Q Consensus 223 ~s~L~~VDLAGsEr~~~~~~~g~r~~E~~~IN~SL~~L~~vI~aL~~~~~~~~~~~~~~~~~~ipyRdSkLT~lL~dsLg 302 (459)
.|+|+||||||+|+....++.|.+++|+..||+||.+|++||.+|++. .+..|||||+|+||+||+++||
T Consensus 225 ~s~l~~VDLaGse~~~~~~~~~~~~~e~~~in~sl~~L~~~l~~l~~~----------~~~~~ip~r~S~LT~lL~~~L~ 294 (335)
T smart00129 225 ASKLNLVDLAGSERASKTGAEGDRLKEAGNINKSLSALGNVINALADG----------QKSRHIPYRDSKLTRLLQDSLG 294 (335)
T ss_pred EEEEEEEECCCCCccccccChhHHHHhhchhhhHHHHHHHHHHHHHhc----------CCCCCCCCcCcHhHHHHHHHcC
Confidence 799999999999999999999999999999999999999999999863 2578999999999999999999
Q ss_pred CCcceeeeeccCCCCCCHHHHHHHHHHHHHhhcccccceec
Q psy7270 303 GNSKTAMIAAISPADINYDETLSTLRYADRAKQIVCKAIVN 343 (459)
Q Consensus 303 Gns~t~~I~~isp~~~~~~eTlsTL~fa~rak~I~n~~~~n 343 (459)
|+++|+||+||||...+++||++||+||+++++|+|+|++|
T Consensus 295 g~~~~~~i~~vsp~~~~~~eTl~tL~~a~~~~~i~~~p~~~ 335 (335)
T smart00129 295 GNSKTLMIANISPSLSNLEETLSTLRFASRAKEIKNKAIVN 335 (335)
T ss_pred CCCeEEEEEEcCCCccchHHHHHHHHHHHHHhhcccCCCcC
Confidence 99999999999999999999999999999999999999875
No 23
>cd00106 KISc Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coil
Probab=100.00 E-value=5e-67 Score=526.86 Aligned_cols=307 Identities=50% Similarity=0.725 Sum_probs=268.6
Q ss_pred CcEEEEEcCCCCccccccCCceEEEEcC-CeEEEECCCCCCCCCCCCceeecceeecCCCCCCCCCCCHHHHHHHHHHHH
Q psy7270 3 SVKVAVRVRPFNNREISRDCKSIIEMTG-NTTVIINPKLPPESKDTHKNFNFDYSYYSHDPSASNFATQAMVYSDIGEEM 81 (459)
Q Consensus 3 ~vkV~vRvRP~~~~E~~~~~~~~v~~~~-~~~~~~~~~~~~~~~~~~~~f~FD~vf~~~d~~~~~~~sQ~~vy~~~~~pl 81 (459)
+|+|+||+||+...| ..+...++.+.+ +.+.+.++... .....+.|.||+||+++ ++|++||+.++.|+
T Consensus 1 ~i~V~vRvrP~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~f~fd~vf~~~-------~~q~~v~~~~~~~~ 70 (328)
T cd00106 1 NIRVVVRIRPLNGRE-SKSEESCITVDDNKTVTLTPPKDG--RKAGPKSFTFDHVFDPN-------STQEDVYETTAKPL 70 (328)
T ss_pred CeEEEEEcCCCCccc-ccCCCcEEEECCCCEEEEecCccc--cCcCceEEECCeEEcCC-------CCHHHHHHHHHHHH
Confidence 699999999999877 345667888888 45555444321 23446899999999876 89999999999999
Q ss_pred HHHhhcCCceEEEeecCCCCCcceeeccCCCCCCCCChHHHHHHHHHHHHhhccC--C--------------cceec--c
Q psy7270 82 LEHAFEGYNVCIFAYGQTGAGKSYTMMGRQEVEGEEGIIPMICQDLFKRIKDTTN--D--------------KLKSR--W 143 (459)
Q Consensus 82 v~~~l~G~n~ti~aYGqTgSGKT~Tm~G~~~~~~~~Giipr~~~~lF~~i~~~~~--~--------------~~~~~--~ 143 (459)
|+++++|+|+||||||+|||||||||+|+.. ++|||||++++||..+..... . .+.++ .
T Consensus 71 v~~~~~G~~~~i~~yG~tgSGKT~tl~G~~~---~~Gli~~~~~~Lf~~~~~~~~~~~~~~v~~S~~Ei~~e~v~DLL~~ 147 (328)
T cd00106 71 VESVLEGYNGTIFAYGQTGSGKTYTMFGSPK---DPGIIPRALEDLFNLIDERKEKNKSFSVSVSYLEIYNEKVYDLLSP 147 (328)
T ss_pred HHHHhCCCceeEEEecCCCCCCeEEecCCCC---CCchHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCEeEECCCC
Confidence 9999999999999999999999999999864 599999999999999987642 1 11111 2
Q ss_pred c--CCcceEeeeCCCCceecCCccccccCHHHHHHHHHHHhhccccccccCCCCCCCceEEEEEEEEEeeecCCCCccce
Q psy7270 144 K--NSNLRVREHPLLGPYVEDLSKLAVTCYRDIHDLIDEGNKARTVAATNMNETSSRSHAVFTIFFTQQAVDDMTDLTTE 221 (459)
Q Consensus 144 ~--~~~l~i~e~~~~g~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~~~~~ 221 (459)
. ...+.+++++.+++++.|++++.|.|++|++.+|..|.++|.+++|.+|..|||||+||+|+|.+........ ..
T Consensus 148 ~~~~~~l~i~~~~~~~~~v~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~--~~ 225 (328)
T cd00106 148 EPPSKPLSLREDPKGGVYVKGLTEVEVGSAEDALSLLQKGLKNRTTASTAMNERSSRSHAIFTIHVEQRNTTNDGR--SI 225 (328)
T ss_pred CCCCCCcEEEEcCCCCEEEeCCEEEEeCCHHHHHHHHHHHHhhcCcccCcCCCCcCcCcEEEEEEEEEEecCCCCc--cE
Confidence 2 6789999999999999999999999999999999999999999999999999999999999999886544221 35
Q ss_pred eEeceeeeccCCCccccCCCCcccchhhhhhhhHhHHHHHHHHHHHHhhhhhhhhhhhcCCCCCccCCCCcchhhhhhcc
Q psy7270 222 KVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEISAVQHVAKKKKKADFIPYRDSVLTWLLRENL 301 (459)
Q Consensus 222 ~~s~L~~VDLAGsEr~~~~~~~g~r~~E~~~IN~SL~~L~~vI~aL~~~~~~~~~~~~~~~~~~ipyRdSkLT~lL~dsL 301 (459)
..|+|+||||||+|+....+..+.+++|+..||+||.+|++||.+|+.. .+..|||||+||||+||+|+|
T Consensus 226 ~~s~l~~VDLaGse~~~~~~~~~~~~~e~~~in~sl~~L~~vl~~l~~~----------~~~~~ip~r~SkLT~lL~~~l 295 (328)
T cd00106 226 KSSKLNLVDLAGSERAKKTGAEGDRLKEAKNINKSLSALGNVISALSSG----------QKKKHIPYRDSKLTRLLQDSL 295 (328)
T ss_pred EEEEEEEEECCCCCcccccCCchhhhHhHHhhhhhHHHHHHHHHHHHhc----------CCCCcCCCcCcHHHHHHHHhc
Confidence 6799999999999999999999999999999999999999999999863 114899999999999999999
Q ss_pred CCCcceeeeeccCCCCCCHHHHHHHHHHHHHhh
Q psy7270 302 GGNSKTAMIAAISPADINYDETLSTLRYADRAK 334 (459)
Q Consensus 302 gGns~t~~I~~isp~~~~~~eTlsTL~fa~rak 334 (459)
||+|+|+||+||+|...+++||++||+||+|||
T Consensus 296 ~g~~~t~~I~~vsp~~~~~~eTl~tL~~a~r~~ 328 (328)
T cd00106 296 GGNSKTLMIANISPSSENYDETLSTLRFASRAK 328 (328)
T ss_pred CCCCeEEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999986
No 24
>PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. The kinesin motor domain is located in the N-terminal part of most of the above proteins, with the exception of KAR3, klpA, and ncd where it is located in the C-terminal section. The kinesin motor domain contains about 330 amino acids. An ATP-binding motif of type A is found near position 80 to 90, the C-terminal half of the domain is involved in microtubule-binding.; GO: 0003777 microtubule motor activity, 0005524 ATP binding, 0007018 microtubule-based movement; PDB: 3NWN_A 2Y5W_A 2Y65_C 3BFN_A 2WBE_C 2ZFL_A 2ZFI_A 1I6I_A 2ZFM_A 1IA0_K ....
Probab=100.00 E-value=5.9e-68 Score=535.12 Aligned_cols=310 Identities=42% Similarity=0.686 Sum_probs=261.1
Q ss_pred EcCCCCccccccCCceEEEEcCCeEEEECCCCCCCCCCCCceeecceeecCCCCCCCCCCCHHHHHHHHHHHHHHHhhcC
Q psy7270 9 RVRPFNNREISRDCKSIIEMTGNTTVIINPKLPPESKDTHKNFNFDYSYYSHDPSASNFATQAMVYSDIGEEMLEHAFEG 88 (459)
Q Consensus 9 RvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~f~FD~vf~~~d~~~~~~~sQ~~vy~~~~~plv~~~l~G 88 (459)
||||++..|...+...++.+....................+.|.||+||++. ++|++||+.++.|+|+++++|
T Consensus 1 RvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~vf~~~-------~~q~~vy~~~~~~~v~~~l~G 73 (335)
T PF00225_consen 1 RVRPLNESEKESSAESIVSVDNQDSNQNKQSVNSNNSQKEKSFRFDRVFDED-------ATQEDVYEEVVSPLVDSVLDG 73 (335)
T ss_dssp EEES-CHHHHHTTTEBCEEEETTETEEEEEETTEEETTEEEEEEESEEEETT-------STHHHHHHHHTHHHHHHHHTT
T ss_pred CcCCCCHHHHhCCCcEEEEecCCccccccccccccCCCCceEEEcCeEECCC-------CCHHHHHHHHHHHHHHHhhcC
Confidence 9999999999888887776653111111111111223456899999999876 899999999999999999999
Q ss_pred CceEEEeecCCCCCcceeeccCCCCCCCCChHHHHHHHHHHHHhhccCC---c--------------ceeccc------C
Q psy7270 89 YNVCIFAYGQTGAGKSYTMMGRQEVEGEEGIIPMICQDLFKRIKDTTND---K--------------LKSRWK------N 145 (459)
Q Consensus 89 ~n~ti~aYGqTgSGKT~Tm~G~~~~~~~~Giipr~~~~lF~~i~~~~~~---~--------------~~~~~~------~ 145 (459)
+|+||||||+|||||||||+|+ ....++||+||++++||..+...... . +.++.. .
T Consensus 74 ~n~~i~ayG~tgSGKT~Tm~G~-~~~~~~Gli~~~~~~lf~~~~~~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~ 152 (335)
T PF00225_consen 74 YNATIFAYGQTGSGKTYTMFGS-NDPSEPGLIPRALRDLFSQIEERKEKSGYEFSVSVSYLEIYNEKVYDLLSPNNSKSR 152 (335)
T ss_dssp -EEEEEEEESTTSSHHHHHTBS-TSTTTBSHHHHHHHHHHHHHHHHTTTSTEEEEEEEEEEEEETTEEEETTSTTSSSTT
T ss_pred CceEEEeecccccccccccccc-ccccccchhhhHHHHHhhhhccccccccccccccccchhhhhhhhhhhcCccccccc
Confidence 9999999999999999999998 22346999999999999999875442 1 111111 2
Q ss_pred CcceEeeeCCCC-ceecCCccccccCHHHHHHHHHHHhhccccccccCCCCCCCceEEEEEEEEEeeecCCCCccceeEe
Q psy7270 146 SNLRVREHPLLG-PYVEDLSKLAVTCYRDIHDLIDEGNKARTVAATNMNETSSRSHAVFTIFFTQQAVDDMTDLTTEKVS 224 (459)
Q Consensus 146 ~~l~i~e~~~~g-~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~~~~~~~s 224 (459)
..+.+++++..| +++.|++++.|.++++++.+|..|.++|.++.|.+|..|||||+||+|+|.+..............|
T Consensus 153 ~~l~i~~~~~~g~~~i~~l~~~~v~s~~~~~~~l~~~~~~R~~~~t~~n~~sSRSH~i~~i~v~~~~~~~~~~~~~~~~s 232 (335)
T PF00225_consen 153 KPLKIREDSNKGSVYIKGLTEVEVKSAEEALQLLKKGQKNRRTASTKMNARSSRSHAIFTIHVEQKDRDPSDDEESVKHS 232 (335)
T ss_dssp SEBEEEEETTTEEEEETTSEEEEESSHHHHHHHHHHHHHHHTCTSSSCTHHGGGSEEEEEEEEEEEETTTTTEEEEEEEE
T ss_pred cccceeeccccccceeeccccccccccccccccccchhhccccccccccccccccccccccccccccccccccccceeec
Confidence 469999999877 9999999999999999999999999999999999999999999999999999876553322235679
Q ss_pred ceeeeccCCCccccCCCCc-ccchhhhhhhhHhHHHHHHHHHHHHhhhhhhhhhhhcCCCCCccCCCCcchhhhhhccCC
Q psy7270 225 KISLVDLAGSERADSTGAK-GTRLKEGANINKSLTTLGKVISALAEISAVQHVAKKKKKADFIPYRDSVLTWLLRENLGG 303 (459)
Q Consensus 225 ~L~~VDLAGsEr~~~~~~~-g~r~~E~~~IN~SL~~L~~vI~aL~~~~~~~~~~~~~~~~~~ipyRdSkLT~lL~dsLgG 303 (459)
+|+||||||+|+..+.++. +.+++|+..||+||.+|++||.+|+.. ....|||||+||||+||+|+|||
T Consensus 233 ~l~~vDLaGsE~~~~~~~~~~~~~~e~~~in~Sl~~L~~vi~~L~~~----------~~~~~vpyr~SkLT~lL~d~l~g 302 (335)
T PF00225_consen 233 RLTFVDLAGSERLKKSGASDGQRLKESSNINKSLSALGNVIRALAQG----------SKQSHVPYRDSKLTRLLKDSLGG 302 (335)
T ss_dssp EEEEEEEEESTGGCGCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHCT----------TSTSSSCGGGSHHHHHTGGGTSS
T ss_pred ceeeeecccccccccccccccccccccceecchhhhhhhhHhhhhcc----------ccchhhhhhcccccceecccccc
Confidence 9999999999999998864 788999999999999999999999873 25889999999999999999999
Q ss_pred CcceeeeeccCCCCCCHHHHHHHHHHHHHhhcc
Q psy7270 304 NSKTAMIAAISPADINYDETLSTLRYADRAKQI 336 (459)
Q Consensus 304 ns~t~~I~~isp~~~~~~eTlsTL~fa~rak~I 336 (459)
||+|+||+||||+..+++||++||+||++||+|
T Consensus 303 ~s~t~~I~~vsp~~~~~~eTl~tL~fa~~~~~I 335 (335)
T PF00225_consen 303 NSKTILIVCVSPSSEDYEETLSTLRFASRAREI 335 (335)
T ss_dssp SSEEEEEEEE-SBGGGHHHHHHHHHHHHHHTTE
T ss_pred cccceeEEEcCCccccHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999999987
No 25
>KOG0244|consensus
Probab=100.00 E-value=2e-68 Score=564.85 Aligned_cols=331 Identities=42% Similarity=0.601 Sum_probs=288.5
Q ss_pred cCCCCccccccCCceEEEEcCCeEEEECCCCCCCCCCCCceeecceeecCCCCCCCCCCCHHHHHHHHHHHHHHHhhcCC
Q psy7270 10 VRPFNNREISRDCKSIIEMTGNTTVIINPKLPPESKDTHKNFNFDYSYYSHDPSASNFATQAMVYSDIGEEMLEHAFEGY 89 (459)
Q Consensus 10 vRP~~~~E~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~f~FD~vf~~~d~~~~~~~sQ~~vy~~~~~plv~~~l~G~ 89 (459)
|||+...|...+|..|+.+.++...+. ...+..|+||+||... .+|.++|+.++.|+++.+|.||
T Consensus 1 vRpl~~~e~~~g~~~c~~~~~~~pqv~--------ig~~~s~t~d~v~~~~-------~~Q~~~~e~~V~~l~~~lf~gy 65 (913)
T KOG0244|consen 1 VRPLKQMEEEQGCRRCTEVSPRTPQVA--------IGKDASFTYDKVFLDL-------ESQKEVYESCVRPLREKLFAGY 65 (913)
T ss_pred CCCccchHHHhcchhhcccCCCCCcee--------ecCCcceeeeeeccCc-------hHHHHHHHHHHHHHHHHHhhhh
Confidence 699999999999998887554433332 1235789999999754 6799999999999999999999
Q ss_pred ceEEEeecCCCCCcceeeccCCCCCCC-CChHHHHHHHHHHHHhhccCCcce--------------ecc----cCCcceE
Q psy7270 90 NVCIFAYGQTGAGKSYTMMGRQEVEGE-EGIIPMICQDLFKRIKDTTNDKLK--------------SRW----KNSNLRV 150 (459)
Q Consensus 90 n~ti~aYGqTgSGKT~Tm~G~~~~~~~-~Giipr~~~~lF~~i~~~~~~~~~--------------~~~----~~~~l~i 150 (459)
|+|++|||||||||||||.+......+ .|+|||+++++|.++.+.....+. ... ...++.+
T Consensus 66 natvlaygQtgsgkTytmgt~~~~~~~~~Gvipr~v~~~f~~i~~~~~~~f~i~vs~vely~e~v~dl~~~~~~~~~i~~ 145 (913)
T KOG0244|consen 66 NATVLAYGQTGSGKTYTMGTNDAPAQDTVGVIPRAVSTLFTRIGKTESFVFRITVSFVELYNEEVLDLLKPSRLKANIKL 145 (913)
T ss_pred cceeeeecccCCCceeecccccccccccCCcCcchHHHHHHHHHhhhccceeeeeeeeeccchhhhhhcChhhhhhceec
Confidence 999999999999999999888544444 499999999999999876542111 111 1234677
Q ss_pred eeeCCCCceecCCccccccCHHHHHHHHHHHhhccccccccCCCCCCCceEEEEEEEEEeeecCCCCccceeEeceeeec
Q psy7270 151 REHPLLGPYVEDLSKLAVTCYRDIHDLIDEGNKARTVAATNMNETSSRSHAVFTIFFTQQAVDDMTDLTTEKVSKISLVD 230 (459)
Q Consensus 151 ~e~~~~g~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~~~~~~~s~L~~VD 230 (459)
++ +.+++.+.|++++.|.+..++...|..|...|++++|.||..|||||+||++.+++...... .....+||+|||
T Consensus 146 ~e-~~g~it~~glte~tv~~~~q~~~~L~~g~~~RtvasTnMN~qssRshAifti~lkq~kk~~~---~s~~~sKlhlVD 221 (913)
T KOG0244|consen 146 RE-PKGEITIRGLTEKTVRMKLQLLSRLEKGSLERTVASTNMNAQSSRSHAIFTITLKQRKKLSK---RSSFCSKLHLVD 221 (913)
T ss_pred cc-cCCceEEEeehHHHHHHHHHHHHHHHhchHHHHHHHHhcchhhhhhhHHHHHHHHHHHHhhc---cchhhhhhheee
Confidence 77 77889999999999999999999999999999999999999999999999999988644332 223458999999
Q ss_pred cCCCccccCCCCcccchhhhhhhhHhHHHHHHHHHHHHhhhhhhhhhhhcCCCCCccCCCCcchhhhhhccCCCcceeee
Q psy7270 231 LAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEISAVQHVAKKKKKADFIPYRDSVLTWLLRENLGGNSKTAMI 310 (459)
Q Consensus 231 LAGsEr~~~~~~~g~r~~E~~~IN~SL~~L~~vI~aL~~~~~~~~~~~~~~~~~~ipyRdSkLT~lL~dsLgGns~t~~I 310 (459)
||||||.++|++.|+|++||.+||.+|++||+||.||.+. ++..|||||||||||||||+||||+.|+||
T Consensus 222 LAGSER~kkT~a~gdrlKEgInIN~gLL~LgnVIsaLg~~----------kk~~~vpyRdSkltrlLQdslgGns~tlmi 291 (913)
T KOG0244|consen 222 LAGSERVKKTKAEGDRLKEGININGGLLALGNVISALGEA----------KKGGEVPYRDSKLTRLLQDSLGGNSDTLMI 291 (913)
T ss_pred ccccccccccccchhhhhhccCcchHHHHHHHHHHHHHhh----------hcCCcccchHHHHHHHHHHHhcCCcceeee
Confidence 9999999999999999999999999999999999999874 347799999999999999999999999999
Q ss_pred eccCCCCCCHHHHHHHHHHHHHhhcccccceecccchHHHHHHHHHHHHHHHHHHHhhc
Q psy7270 311 AAISPADINYDETLSTLRYADRAKQIVCKAIVNEDANAKLIRELKEEIQRLRDLLKQEG 369 (459)
Q Consensus 311 ~~isp~~~~~~eTlsTL~fa~rak~I~n~~~~n~~~~~~~i~~l~~ei~~L~~~l~~~~ 369 (459)
+||||+..+.+||++||+||.||++|+|+|++|.++....+..|+.+|+.|+..|...+
T Consensus 292 aCiSpadsn~~EtlnTl~ya~Rak~iknk~vvN~d~~~~~~~~lK~ql~~l~~ell~~~ 350 (913)
T KOG0244|consen 292 ACISPADSNAQETLNTLRYADRAKQIKNKPVVNQDPKSFEMLKLKAQLEPLQVELLSKA 350 (913)
T ss_pred eecChhhhhhhhHHHHHHHhhHHHHhcccccccccHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999998886653
No 26
>KOG0246|consensus
Probab=100.00 E-value=7.5e-66 Score=517.33 Aligned_cols=311 Identities=37% Similarity=0.555 Sum_probs=267.4
Q ss_pred CcEEEEEcCCCCccccccCCceEEEEcCCeEEEECC-CCCCCC--CCCCceeecceeecCCCCCCCCCCCHHHHHHHHHH
Q psy7270 3 SVKVAVRVRPFNNREISRDCKSIIEMTGNTTVIINP-KLPPES--KDTHKNFNFDYSYYSHDPSASNFATQAMVYSDIGE 79 (459)
Q Consensus 3 ~vkV~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~~~-~~~~~~--~~~~~~f~FD~vf~~~d~~~~~~~sQ~~vy~~~~~ 79 (459)
.|.||||-||++..|.......++.+....+++++. +....- .-..+.|.||++|+.. ++.+.||..+++
T Consensus 209 rI~VCVRKRPLnkkE~~~keiDvisvps~~~l~vHEpk~kVDLtkYlEn~~F~FDyaFDe~-------~sNe~VYrfTa~ 281 (676)
T KOG0246|consen 209 RICVCVRKRPLNKKELTKKEIDVISVPSKNVLVVHEPKLKVDLTKYLENQKFRFDYAFDES-------ASNELVYRFTAK 281 (676)
T ss_pred eEEEEeecCCCCchhccccccceEeccccceEEeeccccccchHHHHhhceEEEeeecccc-------cchHHHHHHhhh
Confidence 588999999999999998888899997766666654 221111 1224689999999754 899999999999
Q ss_pred HHHHHhhcCCceEEEeecCCCCCcceeeccCCC---CCCCCChHHHHHHHHHHHHhhccCCcc----------------e
Q psy7270 80 EMLEHAFEGYNVCIFAYGQTGAGKSYTMMGRQE---VEGEEGIIPMICQDLFKRIKDTTNDKL----------------K 140 (459)
Q Consensus 80 plv~~~l~G~n~ti~aYGqTgSGKT~Tm~G~~~---~~~~~Giipr~~~~lF~~i~~~~~~~~----------------~ 140 (459)
|+|..+|+|--+|+||||||||||||||-|.-. .+...||..++.+|+|..+..-....+ .
T Consensus 282 PlV~~IF~~G~ATCFAYGQTGSGKT~TMggdfsgk~q~~s~giya~aa~Dvf~~L~~p~Y~~~~l~v~~tFFEIYgGKvf 361 (676)
T KOG0246|consen 282 PLVKTIFEGGMATCFAYGQTGSGKTYTMGGDFSGKAQDCSKGIYALAARDVFRLLRQPTYRKLDLKVYVTFFEIYGGKVY 361 (676)
T ss_pred HHHHHHHhCCceeeeeeccCCCCceeecccccCcccccccccchhhhhhHHHHHhcccchhhcceEEEEEEEEEeCcchh
Confidence 999999999999999999999999999988643 234679999999999998875332211 1
Q ss_pred -ecccCCcceEeeeCCCCceecCCccccccCHHHHHHHHHHHhhccccccccCCCCCCCceEEEEEEEEEeeecCCCCcc
Q psy7270 141 -SRWKNSNLRVREHPLLGPYVEDLSKLAVTCYRDIHDLIDEGNKARTVAATNMNETSSRSHAVFTIFFTQQAVDDMTDLT 219 (459)
Q Consensus 141 -~~~~~~~l~i~e~~~~g~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~~~ 219 (459)
.+.....|.+.+|....+.|.||++..|.+.+|++++|+.|++.|.++.|..|..|||||+||+|.+.... .
T Consensus 362 DLL~~k~KLrvLEDg~QQVqVVGLqE~~v~~~eeVl~lIe~Gns~RtsG~TsANs~SSRSHAvfQIilr~~~-------~ 434 (676)
T KOG0246|consen 362 DLLNDKKKLRVLEDGNQQVQVVGLQEEEVSGVEEVLELIEKGNSCRTSGQTSANSNSSRSHAVFQIILRKHG-------E 434 (676)
T ss_pred hhhccccceEEeecCCceEEEeeceeeeccCHHHHHHHHHhcccccccCcccCcccccccceeEeeeeecCC-------c
Confidence 11346789999999999999999999999999999999999999999999999999999999999887532 2
Q ss_pred ceeEeceeeeccCCCccccCC-CCcccchhhhhhhhHhHHHHHHHHHHHHhhhhhhhhhhhcCCCCCccCCCCcchhhhh
Q psy7270 220 TEKVSKISLVDLAGSERADST-GAKGTRLKEGANINKSLTTLGKVISALAEISAVQHVAKKKKKADFIPYRDSVLTWLLR 298 (459)
Q Consensus 220 ~~~~s~L~~VDLAGsEr~~~~-~~~g~r~~E~~~IN~SL~~L~~vI~aL~~~~~~~~~~~~~~~~~~ipyRdSkLT~lL~ 298 (459)
....|++.||||||+||...| .+..++..||+.||+||+||..||.||.. ...|+|||.||||.+|+
T Consensus 435 ~k~hGKfSlIDLAGnERGaDts~adRqtRlEGAEINKSLLALKECIRaLg~------------nk~H~PFR~SKLTqVLR 502 (676)
T KOG0246|consen 435 FKLHGKFSLIDLAGNERGADTSSADRQTRLEGAEINKSLLALKECIRALGR------------NKSHLPFRGSKLTQVLR 502 (676)
T ss_pred ceeEeEEEEEEccCCccCCcccccchhhhhhhhhhhHHHHHHHHHHHHhcC------------CCCCCCchhhhHHHHHH
Confidence 355799999999999997655 45567778999999999999999999975 67899999999999999
Q ss_pred hccCC-CcceeeeeccCCCCCCHHHHHHHHHHHHHhhccccc
Q psy7270 299 ENLGG-NSKTAMIAAISPADINYDETLSTLRYADRAKQIVCK 339 (459)
Q Consensus 299 dsLgG-ns~t~~I~~isp~~~~~~eTlsTL~fa~rak~I~n~ 339 (459)
|||-| ||+|+||+||||...+.+.||+|||||.|+|.....
T Consensus 503 DSFIGenSrTcMIA~ISPg~~ScEhTLNTLRYAdRVKeLsv~ 544 (676)
T KOG0246|consen 503 DSFIGENSRTCMIATISPGISSCEHTLNTLRYADRVKELSVD 544 (676)
T ss_pred HhhcCCCCceEEEEEeCCCcchhhhhHHHHHHHHHHHhhcCC
Confidence 99988 999999999999999999999999999999997544
No 27
>KOG0247|consensus
Probab=100.00 E-value=3.9e-65 Score=525.42 Aligned_cols=321 Identities=34% Similarity=0.523 Sum_probs=268.0
Q ss_pred CCCcEEEEEcCCCCccccccCCceEEEEcCCeEEEEC-CCCC-----CCCCCCCceeecceeecCCCCCCCCCCCHHHHH
Q psy7270 1 MSSVKVAVRVRPFNNREISRDCKSIIEMTGNTTVIIN-PKLP-----PESKDTHKNFNFDYSYYSHDPSASNFATQAMVY 74 (459)
Q Consensus 1 m~~vkV~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~~-~~~~-----~~~~~~~~~f~FD~vf~~~d~~~~~~~sQ~~vy 74 (459)
+..|.|+||+||+.+. .+..+++.+.+..+++.. |... .+.....+.|.|..||++. ++|.+||
T Consensus 30 ~d~v~v~~rvrP~~~~---~~~~g~l~v~n~~tivL~~P~d~~~~~~~n~~q~e~~fsFt~VF~p~-------~tQ~dvF 99 (809)
T KOG0247|consen 30 KDPVLVVCRVRPLSDA---SEDEGCLRVINEETIVLETPEDSFARRSVNGGQMEKKFSFTKVFGPS-------VTQADVF 99 (809)
T ss_pred hcchheeEeecCCCCC---ccccceEEEeccceeEeeCcHHHHhhhccCccceeeEeeeeeecCCC-------ccHHHHH
Confidence 3578999999999862 344455555555554443 4321 1222345789999999765 9999999
Q ss_pred HHHHHHHHHHhhcCCceEEEeecCCCCCcceeeccCCCCCCCCChHHHHHHHHHHHHhhccCCcc---------------
Q psy7270 75 SDIGEEMLEHAFEGYNVCIFAYGQTGAGKSYTMMGRQEVEGEEGIIPMICQDLFKRIKDTTNDKL--------------- 139 (459)
Q Consensus 75 ~~~~~plv~~~l~G~n~ti~aYGqTgSGKT~Tm~G~~~~~~~~Giipr~~~~lF~~i~~~~~~~~--------------- 139 (459)
+.++.|+|.+++.|.|..+|+||.|||||||||+|++. .+||+||+++-||+.|.+......
T Consensus 100 ~~~~~plV~dlLkgqn~LlFTyGVTgSGKTYTm~G~~~---~~GIlPR~Ld~iF~siq~~~~~k~~~kp~~s~~~e~~~~ 176 (809)
T KOG0247|consen 100 DTTVAPLVKDLLKGQNSLLFTYGVTGSGKTYTMTGTPD---RPGILPRALDVIFNSIQGRQAKKPVFKPLRSNLFEIKAE 176 (809)
T ss_pred HHHhHHHHHHHHcccceeEEEeeccCCCceEEeecCCC---CCCchHHHHHHHHHHhhceeccCceeccccchHHHHHHH
Confidence 99999999999999999999999999999999999865 589999999999998864221100
Q ss_pred ------------------------------------------------eec-----------------------ccCC-c
Q psy7270 140 ------------------------------------------------KSR-----------------------WKNS-N 147 (459)
Q Consensus 140 ------------------------------------------------~~~-----------------------~~~~-~ 147 (459)
.|. .... .
T Consensus 177 ~~alL~lkr~~~~nd~~~ts~~~~~~~~e~~e~~~~~e~~~~~l~~d~~ysV~VSf~EIYN~~iYDLLe~~s~q~~~~~~ 256 (809)
T KOG0247|consen 177 EDALLQLKREAMLNDRKSTSKAHRQSTPEYAEHIHVIEQPALELDEDIVYSVFVSFVEIYNNYIYDLLEDASFQGKLQKL 256 (809)
T ss_pred HHHHHhhhhhhccccccCcchhhccccHHHHhhcchhcccccccCcCcEEEEEeeHHHHHHHHHHHhhccccccchhhhh
Confidence 000 0011 1
Q ss_pred ceEeeeCCCCceecCCccccccCHHHHHHHHHHHhhccccccccCCCCCCCceEEEEEEEEEeeecCCCCccceeEecee
Q psy7270 148 LRVREHPLLGPYVEDLSKLAVTCYRDIHDLIDEGNKARTVAATNMNETSSRSHAVFTIFFTQQAVDDMTDLTTEKVSKIS 227 (459)
Q Consensus 148 l~i~e~~~~g~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~~~~~~~s~L~ 227 (459)
..+++|..+..||.|+++|.|.+.+|++++|..|.++|+.++|..|..|||||+||+|.+.+...+. +.....+|.|.
T Consensus 257 ~ll~~d~~~~~~Vkgl~~V~VssseEA~~l~~lGqk~r~~asT~lN~~SSRSHsVFtIkl~q~~~~~--~s~~i~vSqls 334 (809)
T KOG0247|consen 257 KLLREDTNGNMYVKGLTEVEVSSSEEALELFQLGQKRRRVASTKLNANSSRSHSVFTIKLVQAPRSQ--DSNQITVSQLS 334 (809)
T ss_pred hhhhhccCCCeeeccccEEEeccHHHHHHHHHHHHhhhhhhheeccccccccceeEEEEeeeccccc--ccCceeEEeee
Confidence 4567788889999999999999999999999999999999999999999999999999999976652 22445679999
Q ss_pred eeccCCCccccCCCCcccchhhhhhhhHhHHHHHHHHHHHHhhhhhhhhhhhcCCCCCccCCCCcchhhhhhccCCCcce
Q psy7270 228 LVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEISAVQHVAKKKKKADFIPYRDSVLTWLLRENLGGNSKT 307 (459)
Q Consensus 228 ~VDLAGsEr~~~~~~~g~r~~E~~~IN~SL~~L~~vI~aL~~~~~~~~~~~~~~~~~~ipyRdSkLT~lL~dsLgGns~t 307 (459)
|||||||||..++.++|.|++|+++||.||++||+||.+|.+.+. .+.+.+|||||||||++++.+|.|+.+.
T Consensus 335 LvDLAGSERt~rtq~sG~RLrEagNINtSLmTLg~Cie~LR~nqk-------~ks~~~VPyRdSKLThlfq~~f~G~gki 407 (809)
T KOG0247|consen 335 LVDLAGSERTNRTQNSGERLREAGNINTSLMTLRRCIDVLRENQK-------SKSQKIVPYRDSKLTHLFKNYFDGKGKI 407 (809)
T ss_pred eeecccchhcccccchhHHHHhhccccHHHHHHHHHHHHHHHHhh-------hhccccCcchHHHHHHHHHHhcCCCCcE
Confidence 999999999999999999999999999999999999999987533 3455899999999999999999999999
Q ss_pred eeeeccCCCCCCHHHHHHHHHHHHHhhcccccceec
Q psy7270 308 AMIAAISPADINYDETLSTLRYADRAKQIVCKAIVN 343 (459)
Q Consensus 308 ~~I~~isp~~~~~~eTlsTL~fa~rak~I~n~~~~n 343 (459)
+||.||+|.+.+|+|+++.|+||.-|..|.+.+-++
T Consensus 408 ~MIV~vnp~~e~YdEnl~vlkFaeiaq~v~v~~~~~ 443 (809)
T KOG0247|consen 408 RMIVCVNPKAEDYDENLNVLKFAEIAQEVEVARPVI 443 (809)
T ss_pred EEEEecCCchhhHHHHHHHHHHHHhcccccccCccc
Confidence 999999999999999999999999999998765553
No 28
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=3.7e-58 Score=488.30 Aligned_cols=273 Identities=46% Similarity=0.711 Sum_probs=245.5
Q ss_pred CceeecceeecCCCCCCCCCCCHHHHHHHHHHHHHHHhhcCCceEEEeecCCCCCcceeeccCCCCCCCCChHHHHHHHH
Q psy7270 48 HKNFNFDYSYYSHDPSASNFATQAMVYSDIGEEMLEHAFEGYNVCIFAYGQTGAGKSYTMMGRQEVEGEEGIIPMICQDL 127 (459)
Q Consensus 48 ~~~f~FD~vf~~~d~~~~~~~sQ~~vy~~~~~plv~~~l~G~n~ti~aYGqTgSGKT~Tm~G~~~~~~~~Giipr~~~~l 127 (459)
...|.||.||.+. ++|++||+.++.|+++.++.||||||||||||||||||||.|.. ..+||||+++.+|
T Consensus 55 ~~~~~fdkvf~~~-------~~q~~v~e~~~~~l~~~~l~g~N~TvfayGqTgsgKtyt~~G~~---~~~Gii~~~l~~l 124 (568)
T COG5059 55 EGTYAFDKVFGPS-------ATQEDVYEETIKPLIDSLLLGYNCTVFAYGQTGSGKTYTMSGTE---EEPGIIPLSLKEL 124 (568)
T ss_pred ceEEEEeeccCCC-------CcHHHHHHHhhhhHHHHHHhcccceEEEEcccCCCceeEeecCc---cccchHHHHHHHH
Confidence 4679999999765 89999999999999999999999999999999999999999986 3699999999999
Q ss_pred HHHHhhccCCc---c--ee----------cccCC--cceEeeeCCCCceecCCccccccCHHHHHHHHHHHhhccccccc
Q psy7270 128 FKRIKDTTNDK---L--KS----------RWKNS--NLRVREHPLLGPYVEDLSKLAVTCYRDIHDLIDEGNKARTVAAT 190 (459)
Q Consensus 128 F~~i~~~~~~~---~--~~----------~~~~~--~l~i~e~~~~g~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~t 190 (459)
|+.+....... + .+ +.... .+.++++...++.|.|+++..+.+++|++.+|..|..+|.++.|
T Consensus 125 f~~l~~~~~~~~~~v~is~lEiYnEk~~DLl~~~~~~~~~~~~~~~~v~v~~l~~~~~~s~ee~l~~l~~~~~nr~~~~t 204 (568)
T COG5059 125 FSKLEDLSMTKDFAVSISYLEIYNEKIYDLLSPNEESLNIREDSLLGVKVAGLTEKHVSSKEEILDLLRKGEKNRTTAST 204 (568)
T ss_pred HHHHHhcccCcceeeEeehhHHHhhHHHhhccCccccccccccCCCceEeecceEEecCChHHHHHHHHHhhhhcccccc
Confidence 99987665321 1 11 11111 25688999999999999999999999999999999999999999
Q ss_pred cCCCCCCCceEEEEEEEEEeeecCCCCccceeEeceeeeccCCCccccCCCCcccchhhhhhhhHhHHHHHHHHHHHHhh
Q psy7270 191 NMNETSSRSHAVFTIFFTQQAVDDMTDLTTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEI 270 (459)
Q Consensus 191 ~~n~~SSRSH~if~i~v~~~~~~~~~~~~~~~~s~L~~VDLAGsEr~~~~~~~g~r~~E~~~IN~SL~~L~~vI~aL~~~ 270 (459)
.+|..|||||+||++++.+....... ...++|+||||||||++..++..+.|++|+..||+||++||+||.+|.+.
T Consensus 205 e~n~~ssRshsi~~i~~~~~~~~~~~----~~~~~l~lvDLagSE~~~~~~~~~~r~~E~~~iN~sLl~Lg~vI~~L~~~ 280 (568)
T COG5059 205 EINDESSRSHSIFQIELASKNKVSGT----SETSKLSLVDLAGSERAARTGNRGTRLKEGASINKSLLTLGNVINALGDK 280 (568)
T ss_pred hhccccccceEEEEEEEEEeccCccc----eecceEEEEeeccccccchhhcccchhhhhhhhHhhHHHHHHHHHHHhcc
Confidence 99999999999999999987644322 22379999999999999999999999999999999999999999999862
Q ss_pred hhhhhhhhhcCCCCCccCCCCcchhhhhhccCCCcceeeeeccCCCCCCHHHHHHHHHHHHHhhcccccceecc
Q psy7270 271 SAVQHVAKKKKKADFIPYRDSVLTWLLRENLGGNSKTAMIAAISPADINYDETLSTLRYADRAKQIVCKAIVNE 344 (459)
Q Consensus 271 ~~~~~~~~~~~~~~~ipyRdSkLT~lL~dsLgGns~t~~I~~isp~~~~~~eTlsTL~fa~rak~I~n~~~~n~ 344 (459)
++..|||||+|||||+|+++|||+|+|+|||||+|+..++++|.+||+||+||+.|+|++..|.
T Consensus 281 ----------~~~~~ipyReskLTRlLq~sLgG~~~~~~i~~Isp~~~~~~et~~tL~~a~rak~I~~~~~~~~ 344 (568)
T COG5059 281 ----------KKSGHIPYRESKLTRLLQDSLGGNCNTRVICTISPSSNSFEETINTLKFASRAKSIKNKIQVNS 344 (568)
T ss_pred ----------ccCCccchhhhHHHHHHHHhcCCCccEEEEEEEcCCCCchHHHHHHHHHHHHHhhcCCcccccC
Confidence 4688999999999999999999999999999999999999999999999999999999999994
No 29
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=100.00 E-value=3.5e-54 Score=399.07 Aligned_cols=179 Identities=60% Similarity=0.930 Sum_probs=166.3
Q ss_pred HHHHHHHHHHHHhhcCCceEEEeecCCCCCcceeeccCCCCCCCCChHHHHHHHHHHHHhhccCCcceecccCCcceEee
Q psy7270 73 VYSDIGEEMLEHAFEGYNVCIFAYGQTGAGKSYTMMGRQEVEGEEGIIPMICQDLFKRIKDTTNDKLKSRWKNSNLRVRE 152 (459)
Q Consensus 73 vy~~~~~plv~~~l~G~n~ti~aYGqTgSGKT~Tm~G~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~~~~~~~l~i~e 152 (459)
||+.++ |+|+.+++|||+||||||||||||||||+|+.. ++||+|+++++
T Consensus 8 vf~~~~-~~v~~~~~G~n~~i~~yG~tGsGKT~Tm~G~~~---~~Giip~~~~~-------------------------- 57 (186)
T cd01363 8 VFRDVG-PLLQSALDGYNVCIFAYGQTGSGKTYTMEGKRE---GAGIIPRTVTD-------------------------- 57 (186)
T ss_pred HHHHHH-HHHHHHhCCcceeEEEECCCCCcceEecCCCCC---CCCcchHHHHH--------------------------
Confidence 899999 999999999999999999999999999999864 58999999988
Q ss_pred eCCCCceecCCccccccCHHHHHHHHHHHhhccccccccCCCCCCCceEEEEEEEEEeeecCCCCccceeEeceeeeccC
Q psy7270 153 HPLLGPYVEDLSKLAVTCYRDIHDLIDEGNKARTVAATNMNETSSRSHAVFTIFFTQQAVDDMTDLTTEKVSKISLVDLA 232 (459)
Q Consensus 153 ~~~~g~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~~~~~~~s~L~~VDLA 232 (459)
++.++..|.++|..+.|.+|..|||||+||+|++.+...... .......|+|+|||||
T Consensus 58 ---------------------~~~ll~~g~~~R~~~~t~~N~~SSRsH~i~~i~v~~~~~~~~-~~~~~~~s~l~lVDLA 115 (186)
T cd01363 58 ---------------------VIDLMDKGNANRTTAATAMNEHSSRSHSVFRIHFGGKNALAS-ATEQPKVGKINLVDLA 115 (186)
T ss_pred ---------------------HHHHHhhccccccccccCCCCccCcccEEEEEEEEEeecCCC-CccceeeeeEEEEEcc
Confidence 889999999999999999999999999999999998765432 2234567999999999
Q ss_pred CCccccCCCCcccchhhhhhhhHhHHHHHHHHHHHHhhhhhhhhhhhcCCCCCccCCCCcchhhhhhccCCCcceeeeec
Q psy7270 233 GSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEISAVQHVAKKKKKADFIPYRDSVLTWLLRENLGGNSKTAMIAA 312 (459)
Q Consensus 233 GsEr~~~~~~~g~r~~E~~~IN~SL~~L~~vI~aL~~~~~~~~~~~~~~~~~~ipyRdSkLT~lL~dsLgGns~t~~I~~ 312 (459)
|||+..+++..+.+++|+..||+||.+|++||.+|++ +..||||||||||+||+|+|||||+|+||+|
T Consensus 116 GsE~~~~~~~~~~~~~e~~~in~sl~~L~~~i~~l~~------------~~~~vpyr~SkLT~lL~~~L~g~~~t~~i~~ 183 (186)
T cd01363 116 GSERIDFSGAEGSRLTETANINKSLSTLGNVISALAE------------RDSHVPYRESKLTRLLQDSLGGNSRTLMVAC 183 (186)
T ss_pred ccccccccCCchhhHHHHHHHhhHHHHHHHHHHHHhc------------CCCCCCCcccHHHHHHHHhcCCCCeEEEEEE
Confidence 9999999999999999999999999999999999986 5689999999999999999999999999999
Q ss_pred cCC
Q psy7270 313 ISP 315 (459)
Q Consensus 313 isp 315 (459)
|||
T Consensus 184 vsP 186 (186)
T cd01363 184 ISP 186 (186)
T ss_pred eCc
Confidence 998
No 30
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=97.97 E-value=1.4e-07 Score=101.39 Aligned_cols=193 Identities=31% Similarity=0.380 Sum_probs=119.0
Q ss_pred CceeecceeecCCCCCCCCCCCHHHHHHHHHHHHHHHhhcCCceEEEeecCCCCCcceeeccCCCCCCCCChHHHHHHHH
Q psy7270 48 HKNFNFDYSYYSHDPSASNFATQAMVYSDIGEEMLEHAFEGYNVCIFAYGQTGAGKSYTMMGRQEVEGEEGIIPMICQDL 127 (459)
Q Consensus 48 ~~~f~FD~vf~~~d~~~~~~~sQ~~vy~~~~~plv~~~l~G~n~ti~aYGqTgSGKT~Tm~G~~~~~~~~Giipr~~~~l 127 (459)
...|.||.+|+.. ..+..++... ..+++..++| +++||++++|+++||.-. ..++..-.+...
T Consensus 352 ~~~~~~d~~~~~~-------~~~~~~~~~~-~~~~~~~~~~----~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~ 414 (568)
T COG5059 352 IEEIKFDLSEDRS-------EIEILVFREQ-SQLSQSSLSG----IFAYMQSLKKETETLKSR-----IDLIMKSIISGT 414 (568)
T ss_pred HHHHHhhhhhhhh-------hhhhHHHHHH-Hhhhhhhhhh----HHHHHhhhhhhhhcccch-----hhhhhhhhhhhh
Confidence 4568888888654 4556666554 5677777788 999999999999999432 345555555666
Q ss_pred HHHHhhccCCcceecccCCcceEe--------ee-------------CCCCceecCCccccccCHHHHHHHHHHHhhccc
Q psy7270 128 FKRIKDTTNDKLKSRWKNSNLRVR--------EH-------------PLLGPYVEDLSKLAVTCYRDIHDLIDEGNKART 186 (459)
Q Consensus 128 F~~i~~~~~~~~~~~~~~~~l~i~--------e~-------------~~~g~~v~~l~~~~v~s~~e~~~ll~~g~~~R~ 186 (459)
|..+.......+.+......+.+. .. .........++. ......+.... ..+...+.
T Consensus 415 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~ 492 (568)
T COG5059 415 FERKKLLKEEGWKYKSTLQFLRIEIDRLLLLREEELSKKKTKIHKLNKLRHDLSSLLSS-IPEETSDRVES-EKASKLRS 492 (568)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhhhh-cchhhhhhhhh-hhhccchh
Confidence 766544332222111000000000 00 000000000000 00111111111 14567788
Q ss_pred cccccCCCCCCCceEEEEEEEEEeeecCCCCccceeEeceeeeccCCCccccCCCCcccchhhhhhhhHhHHHHHHHHHH
Q psy7270 187 VAATNMNETSSRSHAVFTIFFTQQAVDDMTDLTTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISA 266 (459)
Q Consensus 187 ~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~~~~~~~s~L~~VDLAGsEr~~~~~~~g~r~~E~~~IN~SL~~L~~vI~a 266 (459)
.+.+..|..++++|++|..+........ .. .. ++.|||||+||. .....|.++++..++|++|..++.+|.+
T Consensus 493 ~~~~~~n~~~~~~~~~~~~~~~~~~~~~-----~~-~~-~n~~~~~~~e~~-~s~~~~~~l~~~~~~~k~l~~~~d~~~~ 564 (568)
T COG5059 493 SASTKLNLRSSRSHSKFRDHLNGSNSST-----KE-LS-LNQVDLAGSERK-VSQSVGELLRETQSLNKSLSSLGDVIHA 564 (568)
T ss_pred hcccchhhhhcccchhhhhcccchhhhh-----HH-HH-hhhhhccccccc-hhhhhHHHHHhhHhhhhccccchhhhhh
Confidence 8899999999999999987554322111 01 11 799999999999 8889999999999999999999999987
Q ss_pred H
Q psy7270 267 L 267 (459)
Q Consensus 267 L 267 (459)
+
T Consensus 565 ~ 565 (568)
T COG5059 565 L 565 (568)
T ss_pred c
Confidence 5
No 31
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.16 E-value=0.011 Score=57.98 Aligned_cols=29 Identities=31% Similarity=0.383 Sum_probs=27.5
Q ss_pred HHHHHHhhcCCceEEEeecCCCCCcceee
Q psy7270 79 EEMLEHAFEGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 79 ~plv~~~l~G~n~ti~aYGqTgSGKT~Tm 107 (459)
.|++..+++--++.|+.-|+||||||.||
T Consensus 114 P~i~~~~~~~~~GLILVTGpTGSGKSTTl 142 (353)
T COG2805 114 PPIVRELAESPRGLILVTGPTGSGKSTTL 142 (353)
T ss_pred CHHHHHHHhCCCceEEEeCCCCCcHHHHH
Confidence 68889999999999999999999999998
No 32
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=94.55 E-value=0.02 Score=54.42 Aligned_cols=50 Identities=26% Similarity=0.524 Sum_probs=29.5
Q ss_pred ceeecceeecCCCCCCCCCCCHHHHHHHHHHHHHHHhhcCCceEEEeecCCCCCcceeec
Q psy7270 49 KNFNFDYSYYSHDPSASNFATQAMVYSDIGEEMLEHAFEGYNVCIFAYGQTGAGKSYTMM 108 (459)
Q Consensus 49 ~~f~FD~vf~~~d~~~~~~~sQ~~vy~~~~~plv~~~l~G~n~ti~aYGqTgSGKT~Tm~ 108 (459)
..|+||.-.-. .+++..|..+ ..+.+.--..+|. +|-||++|+||||-|.
T Consensus 3 ~~~tFdnfv~g--------~~N~~a~~~~-~~ia~~~~~~~~~-l~l~G~~G~GKTHLL~ 52 (219)
T PF00308_consen 3 PKYTFDNFVVG--------ESNELAYAAA-KAIAENPGERYNP-LFLYGPSGLGKTHLLQ 52 (219)
T ss_dssp TT-SCCCS--T--------TTTHHHHHHH-HHHHHSTTTSSSE-EEEEESTTSSHHHHHH
T ss_pred CCCccccCCcC--------CcHHHHHHHH-HHHHhcCCCCCCc-eEEECCCCCCHHHHHH
Confidence 35788866532 3456666443 4444442223444 7889999999999763
No 33
>PRK06620 hypothetical protein; Validated
Probab=93.34 E-value=0.063 Score=50.79 Aligned_cols=50 Identities=20% Similarity=0.260 Sum_probs=32.8
Q ss_pred CceeecceeecCCCCCCCCCCCHHHHHHHHHHHHHHHhhcCCc---eEEEeecCCCCCcceeec
Q psy7270 48 HKNFNFDYSYYSHDPSASNFATQAMVYSDIGEEMLEHAFEGYN---VCIFAYGQTGAGKSYTMM 108 (459)
Q Consensus 48 ~~~f~FD~vf~~~d~~~~~~~sQ~~vy~~~~~plv~~~l~G~n---~ti~aYGqTgSGKT~Tm~ 108 (459)
...|+||...-. .++...|..+. .+.+. -|+| -.++-||++||||||.+.
T Consensus 10 ~~~~tfd~Fvvg--------~~N~~a~~~~~-~~~~~--~~~~~~~~~l~l~Gp~G~GKThLl~ 62 (214)
T PRK06620 10 SSKYHPDEFIVS--------SSNDQAYNIIK-NWQCG--FGVNPYKFTLLIKGPSSSGKTYLTK 62 (214)
T ss_pred CCCCCchhhEec--------ccHHHHHHHHH-HHHHc--cccCCCcceEEEECCCCCCHHHHHH
Confidence 345778876643 35667776653 23321 1444 358999999999999984
No 34
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=93.22 E-value=0.044 Score=57.46 Aligned_cols=31 Identities=26% Similarity=0.288 Sum_probs=26.6
Q ss_pred HHHHHHhhcCCceEEEeecCCCCCcceeecc
Q psy7270 79 EEMLEHAFEGYNVCIFAYGQTGAGKSYTMMG 109 (459)
Q Consensus 79 ~plv~~~l~G~n~ti~aYGqTgSGKT~Tm~G 109 (459)
...+..++..-++.|+.-|+||||||.||+.
T Consensus 247 ~~~~~~~~~~p~GliLvTGPTGSGKTTTLY~ 277 (500)
T COG2804 247 LARLLRLLNRPQGLILVTGPTGSGKTTTLYA 277 (500)
T ss_pred HHHHHHHHhCCCeEEEEeCCCCCCHHHHHHH
Confidence 3456677888999999999999999999965
No 35
>PRK06893 DNA replication initiation factor; Validated
Probab=93.21 E-value=0.081 Score=50.50 Aligned_cols=27 Identities=15% Similarity=0.283 Sum_probs=21.6
Q ss_pred HHhhcCCceEEEeecCCCCCcceeecc
Q psy7270 83 EHAFEGYNVCIFAYGQTGAGKSYTMMG 109 (459)
Q Consensus 83 ~~~l~G~n~ti~aYGqTgSGKT~Tm~G 109 (459)
..+-.++|..++-||++|+||||-+.+
T Consensus 32 ~~~~~~~~~~l~l~G~~G~GKThL~~a 58 (229)
T PRK06893 32 KNFIDLQQPFFYIWGGKSSGKSHLLKA 58 (229)
T ss_pred HHhhccCCCeEEEECCCCCCHHHHHHH
Confidence 334457888899999999999998844
No 36
>PRK06526 transposase; Provisional
Probab=93.12 E-value=0.048 Score=53.03 Aligned_cols=37 Identities=16% Similarity=0.216 Sum_probs=23.7
Q ss_pred CCHHHHHHHHHHHHHHHhhcCCceEEEeecCCCCCcceeecc
Q psy7270 68 ATQAMVYSDIGEEMLEHAFEGYNVCIFAYGQTGAGKSYTMMG 109 (459)
Q Consensus 68 ~sQ~~vy~~~~~plv~~~l~G~n~ti~aYGqTgSGKT~Tm~G 109 (459)
.++..+..-...+.++ .+.| |+.||++|+||||.+.+
T Consensus 81 ~~~~~~~~l~~~~fi~---~~~n--lll~Gp~GtGKThLa~a 117 (254)
T PRK06526 81 LKRDTIAHLGTLDFVT---GKEN--VVFLGPPGTGKTHLAIG 117 (254)
T ss_pred cchHHHHHHhcCchhh---cCce--EEEEeCCCCchHHHHHH
Confidence 4455444433333333 3444 79999999999999854
No 37
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=92.76 E-value=0.32 Score=46.85 Aligned_cols=54 Identities=15% Similarity=0.270 Sum_probs=33.5
Q ss_pred cccCHHHHHHHHHHHhhccccccccCCCCCCCceEEEEEEEEEeeecCCCCccceeEeceeeeccCCCccc
Q psy7270 167 AVTCYRDIHDLIDEGNKARTVAATNMNETSSRSHAVFTIFFTQQAVDDMTDLTTEKVSKISLVDLAGSERA 237 (459)
Q Consensus 167 ~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~~~~~~~s~L~~VDLAGsEr~ 237 (459)
.+.+++++...+...... ..+. ...-|.-++.|.|..+.. ..|+||||+|-.+.
T Consensus 85 ~~~~~~~v~~~i~~~~~~-~~~~-----~~~~s~~~i~l~i~~p~~-----------~~ltLIDlPGl~~~ 138 (240)
T smart00053 85 KFTDFDEVRNEIEAETDR-VTGT-----NKGISPVPINLRVYSPHV-----------LNLTLIDLPGITKV 138 (240)
T ss_pred ccCCHHHHHHHHHHHHHH-hcCC-----CCcccCcceEEEEeCCCC-----------CceEEEeCCCcccc
Confidence 446788888888765432 1111 123355677777765421 46899999998543
No 38
>PRK08181 transposase; Validated
Probab=92.46 E-value=0.14 Score=50.19 Aligned_cols=45 Identities=24% Similarity=0.372 Sum_probs=26.7
Q ss_pred cCCceEEEeecCCCCCcceeeccCCCCCCCCC--hHHHHHHHHHHHHhh
Q psy7270 87 EGYNVCIFAYGQTGAGKSYTMMGRQEVEGEEG--IIPMICQDLFKRIKD 133 (459)
Q Consensus 87 ~G~n~ti~aYGqTgSGKT~Tm~G~~~~~~~~G--iipr~~~~lF~~i~~ 133 (459)
.|.| |+-||++|+||||-+.+-...-...| ++...+.+|+..+..
T Consensus 105 ~~~n--lll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~ 151 (269)
T PRK08181 105 KGAN--LLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQV 151 (269)
T ss_pred cCce--EEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHH
Confidence 4555 89999999999998765321000122 333345666666643
No 39
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=92.32 E-value=0.12 Score=56.14 Aligned_cols=38 Identities=24% Similarity=0.466 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHhhcCCceEEEeecCCCCCcceeecc
Q psy7270 70 QAMVYSDIGEEMLEHAFEGYNVCIFAYGQTGAGKSYTMMG 109 (459)
Q Consensus 70 Q~~vy~~~~~plv~~~l~G~n~ti~aYGqTgSGKT~Tm~G 109 (459)
...+|. .+..+++..-.+||. ||-||.+|+||||-+..
T Consensus 296 N~~A~a-aa~avae~~~~~~Np-L~LyG~sGsGKTHLL~A 333 (617)
T PRK14086 296 NRFAHA-AAVAVAEAPAKAYNP-LFIYGESGLGKTHLLHA 333 (617)
T ss_pred cHHHHH-HHHHHHhCccccCCc-EEEECCCCCCHHHHHHH
Confidence 344553 334555543446776 89999999999998754
No 40
>PRK06835 DNA replication protein DnaC; Validated
Probab=92.20 E-value=0.18 Score=50.86 Aligned_cols=37 Identities=19% Similarity=0.346 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHhhcCCceEEEeecCCCCCcceeecc
Q psy7270 71 AMVYSDIGEEMLEHAFEGYNVCIFAYGQTGAGKSYTMMG 109 (459)
Q Consensus 71 ~~vy~~~~~plv~~~l~G~n~ti~aYGqTgSGKT~Tm~G 109 (459)
..+++. +...++.+-.+. -.|+-||++|+||||.+.+
T Consensus 166 ~~~~~~-~~~f~~~f~~~~-~~Lll~G~~GtGKThLa~a 202 (329)
T PRK06835 166 EKILEK-CKNFIENFDKNN-ENLLFYGNTGTGKTFLSNC 202 (329)
T ss_pred HHHHHH-HHHHHHHHhccC-CcEEEECCCCCcHHHHHHH
Confidence 344433 355777776555 5699999999999998744
No 41
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=91.60 E-value=0.12 Score=46.34 Aligned_cols=37 Identities=16% Similarity=0.188 Sum_probs=24.5
Q ss_pred CHHHHHHHHHHHHHHHhhcC-CceEEEeecCCCCCcceeecc
Q psy7270 69 TQAMVYSDIGEEMLEHAFEG-YNVCIFAYGQTGAGKSYTMMG 109 (459)
Q Consensus 69 sQ~~vy~~~~~plv~~~l~G-~n~ti~aYGqTgSGKT~Tm~G 109 (459)
-|.++...+ ++.+-.+ .+..++..++||||||++|..
T Consensus 7 ~Q~~ai~~i----~~~~~~~~~~~~~ll~~~tGsGKT~~~~~ 44 (184)
T PF04851_consen 7 YQQEAIARI----INSLENKKEERRVLLNAPTGSGKTIIALA 44 (184)
T ss_dssp HHHHHHHHH----HHHHHTTSGCSEEEEEESTTSSHHHHHHH
T ss_pred HHHHHHHHH----HHHHHhcCCCCCEEEEECCCCCcChhhhh
Confidence 355555443 4444444 456667778999999999975
No 42
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=91.40 E-value=2 Score=47.72 Aligned_cols=28 Identities=25% Similarity=0.370 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchhHHHH
Q psy7270 348 AKLIRELKEEIQRLRDLLKQEGIEVQEA 375 (459)
Q Consensus 348 ~~~i~~l~~ei~~L~~~l~~~~~~~~~~ 375 (459)
...+.+|..+|.+||.+|.......++.
T Consensus 417 ~~a~~rLE~dvkkLraeLq~~Rq~E~EL 444 (697)
T PF09726_consen 417 PDAISRLEADVKKLRAELQSSRQSEQEL 444 (697)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 4466789999999999987654443333
No 43
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=91.26 E-value=0.15 Score=53.71 Aligned_cols=39 Identities=28% Similarity=0.342 Sum_probs=26.3
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcCCceEEEeecCCCCCcceeecc
Q psy7270 66 NFATQAMVYSDIGEEMLEHAFEGYNVCIFAYGQTGAGKSYTMMG 109 (459)
Q Consensus 66 ~~~sQ~~vy~~~~~plv~~~l~G~n~ti~aYGqTgSGKT~Tm~G 109 (459)
|..+|-.- ...+|+.+-.|.-.-+ -.|.|||||||||--
T Consensus 13 PaGDQP~A----I~~Lv~gi~~g~~~Qt-LLGvTGSGKTfT~An 51 (663)
T COG0556 13 PAGDQPEA----IAELVEGIENGLKHQT-LLGVTGSGKTFTMAN 51 (663)
T ss_pred CCCCcHHH----HHHHHHHHhcCceeeE-EeeeccCCchhHHHH
Confidence 33556432 3567777777766544 359999999999943
No 44
>PRK09087 hypothetical protein; Validated
Probab=90.85 E-value=0.23 Score=47.36 Aligned_cols=47 Identities=15% Similarity=0.120 Sum_probs=29.7
Q ss_pred ceeecceeecCCCCCCCCCCCHHHHHHHHHHHHHHHhhcCCceEEEeecCCCCCcceeec
Q psy7270 49 KNFNFDYSYYSHDPSASNFATQAMVYSDIGEEMLEHAFEGYNVCIFAYGQTGAGKSYTMM 108 (459)
Q Consensus 49 ~~f~FD~vf~~~d~~~~~~~sQ~~vy~~~~~plv~~~l~G~n~ti~aYGqTgSGKT~Tm~ 108 (459)
..|+||..+-. .+...+|..+ .....-.+..++-||++||||||-+.
T Consensus 16 ~~~~~~~Fi~~--------~~N~~a~~~l-----~~~~~~~~~~l~l~G~~GsGKThLl~ 62 (226)
T PRK09087 16 PAYGRDDLLVT--------ESNRAAVSLV-----DHWPNWPSPVVVLAGPVGSGKTHLAS 62 (226)
T ss_pred CCCChhceeec--------CchHHHHHHH-----HhcccCCCCeEEEECCCCCCHHHHHH
Confidence 34667765532 2345677643 22222235568999999999999885
No 45
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=90.51 E-value=0.22 Score=51.09 Aligned_cols=34 Identities=24% Similarity=0.303 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHhhcCCceEEEeecCCCCCcceee
Q psy7270 74 YSDIGEEMLEHAFEGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 74 y~~~~~plv~~~l~G~n~ti~aYGqTgSGKT~Tm 107 (459)
++.++.-+...+-.|-...++.||.||||||.|+
T Consensus 26 i~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~ 59 (366)
T COG1474 26 INQLASFLAPALRGERPSNIIIYGPTGTGKTATV 59 (366)
T ss_pred HHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHH
Confidence 4444333333334444455999999999999876
No 46
>PRK12377 putative replication protein; Provisional
Probab=90.48 E-value=0.27 Score=47.55 Aligned_cols=39 Identities=18% Similarity=0.288 Sum_probs=28.5
Q ss_pred CHHHHHHHHHHHHHHHhhcCCceEEEeecCCCCCcceeecc
Q psy7270 69 TQAMVYSDIGEEMLEHAFEGYNVCIFAYGQTGAGKSYTMMG 109 (459)
Q Consensus 69 sQ~~vy~~~~~plv~~~l~G~n~ti~aYGqTgSGKT~Tm~G 109 (459)
.|..++.. +..++..+..+. ..++-||++|+||||.+.+
T Consensus 82 ~~~~a~~~-a~~~a~~~~~~~-~~l~l~G~~GtGKThLa~A 120 (248)
T PRK12377 82 GQRYALSQ-AKSIADELMTGC-TNFVFSGKPGTGKNHLAAA 120 (248)
T ss_pred hHHHHHHH-HHHHHHHHHhcC-CeEEEECCCCCCHHHHHHH
Confidence 45556654 466777776654 4688899999999998854
No 47
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=90.43 E-value=0.22 Score=42.32 Aligned_cols=27 Identities=22% Similarity=0.235 Sum_probs=18.8
Q ss_pred HHHHhhcCCceEEEeecCCCCCcceee
Q psy7270 81 MLEHAFEGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 81 lv~~~l~G~n~ti~aYGqTgSGKT~Tm 107 (459)
+...+.......++-+|++|+|||+.+
T Consensus 10 i~~~~~~~~~~~v~i~G~~G~GKT~l~ 36 (151)
T cd00009 10 LREALELPPPKNLLLYGPPGTGKTTLA 36 (151)
T ss_pred HHHHHhCCCCCeEEEECCCCCCHHHHH
Confidence 333333434456889999999999765
No 48
>PRK05642 DNA replication initiation factor; Validated
Probab=90.42 E-value=0.23 Score=47.56 Aligned_cols=19 Identities=26% Similarity=0.607 Sum_probs=16.0
Q ss_pred eEEEeecCCCCCcceeecc
Q psy7270 91 VCIFAYGQTGAGKSYTMMG 109 (459)
Q Consensus 91 ~ti~aYGqTgSGKT~Tm~G 109 (459)
..++-||++|+||||-+..
T Consensus 46 ~~l~l~G~~G~GKTHLl~a 64 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQA 64 (234)
T ss_pred CeEEEECCCCCCHHHHHHH
Confidence 4688999999999998743
No 49
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=90.41 E-value=0.25 Score=50.28 Aligned_cols=39 Identities=21% Similarity=0.400 Sum_probs=26.2
Q ss_pred CCHHHHHHHHHHHHHHHhhc-CCceEEEeecCCCCCcceee
Q psy7270 68 ATQAMVYSDIGEEMLEHAFE-GYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 68 ~sQ~~vy~~~~~plv~~~l~-G~n~ti~aYGqTgSGKT~Tm 107 (459)
...++-++.+.. .+..++. +....++-||++|+|||+++
T Consensus 18 ~gRe~e~~~l~~-~l~~~~~~~~~~~i~I~G~~GtGKT~l~ 57 (365)
T TIGR02928 18 VHRDEQIEELAK-ALRPILRGSRPSNVFIYGKTGTGKTAVT 57 (365)
T ss_pred CCcHHHHHHHHH-HHHHHHcCCCCCcEEEECCCCCCHHHHH
Confidence 344555555533 3444444 45568999999999999886
No 50
>PF13245 AAA_19: Part of AAA domain
Probab=90.25 E-value=0.15 Score=39.82 Aligned_cols=26 Identities=23% Similarity=0.360 Sum_probs=17.7
Q ss_pred HHHhhcCCceEEEeecCCCCCcceeec
Q psy7270 82 LEHAFEGYNVCIFAYGQTGAGKSYTMM 108 (459)
Q Consensus 82 v~~~l~G~n~ti~aYGqTgSGKT~Tm~ 108 (459)
|...+. -+..++..|+.|||||+|+.
T Consensus 3 v~~al~-~~~~~vv~g~pGtGKT~~~~ 28 (76)
T PF13245_consen 3 VRRALA-GSPLFVVQGPPGTGKTTTLA 28 (76)
T ss_pred HHHHHh-hCCeEEEECCCCCCHHHHHH
Confidence 444455 33344558999999999973
No 51
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=90.05 E-value=0.3 Score=50.32 Aligned_cols=39 Identities=21% Similarity=0.377 Sum_probs=25.7
Q ss_pred CCHHHHHHHHHHHHHHHhhc-CCceEEEeecCCCCCcceee
Q psy7270 68 ATQAMVYSDIGEEMLEHAFE-GYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 68 ~sQ~~vy~~~~~plv~~~l~-G~n~ti~aYGqTgSGKT~Tm 107 (459)
..-++-++.+.. .+...+. +....++-||++|+|||+++
T Consensus 33 ~~Re~e~~~l~~-~l~~~~~~~~~~~~lI~G~~GtGKT~l~ 72 (394)
T PRK00411 33 PHREEQIEELAF-ALRPALRGSRPLNVLIYGPPGTGKTTTV 72 (394)
T ss_pred CCHHHHHHHHHH-HHHHHhCCCCCCeEEEECCCCCCHHHHH
Confidence 344555555543 3334443 45567899999999999986
No 52
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=90.00 E-value=4.7 Score=34.48 Aligned_cols=93 Identities=25% Similarity=0.273 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHhhchhHHHHHHHHHhhhhcCCCCCCCcchhHHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHH
Q psy7270 350 LIRELKEEIQRLRDLLKQEGIEVQEASELIMSKMAETPNAGENVDWDFAQVELLEKQGVDLKQEMQQRLRDLEEQYKREK 429 (459)
Q Consensus 350 ~i~~l~~ei~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (459)
.|+.+.-|+..|+.++.............+...+.+. +.......++..|+.+..++...++.-+.-+.++
T Consensus 24 ~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~----e~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK----- 94 (120)
T PF12325_consen 24 QLRRLEGELASLQEELARLEAERDELREEIVKLMEEN----EELRALKKEVEELEQELEELQQRYQTLLELLGEK----- 94 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch-----
Confidence 3455566666666666655555555555554444332 1111112233333333333333333222222221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy7270 430 NEADQAFEQQRKSSLRRISKQMKLSI 455 (459)
Q Consensus 430 ~e~~~~~~~~~~~~~~~~~~~~~~~~ 455 (459)
.+.-++++.+++.+++-++..+
T Consensus 95 ----~E~veEL~~Dv~DlK~myr~Qi 116 (120)
T PF12325_consen 95 ----SEEVEELRADVQDLKEMYREQI 116 (120)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHH
Confidence 1123466777777777776655
No 53
>PRK07952 DNA replication protein DnaC; Validated
Probab=89.72 E-value=0.38 Score=46.48 Aligned_cols=39 Identities=18% Similarity=0.175 Sum_probs=26.5
Q ss_pred CHHHHHHHHHHHHHHHhhcCCceEEEeecCCCCCcceeecc
Q psy7270 69 TQAMVYSDIGEEMLEHAFEGYNVCIFAYGQTGAGKSYTMMG 109 (459)
Q Consensus 69 sQ~~vy~~~~~plv~~~l~G~n~ti~aYGqTgSGKT~Tm~G 109 (459)
.|..++..+ ...++.+..|. ..++-||.+|+||||.+.+
T Consensus 80 ~q~~al~~a-~~~~~~~~~~~-~~~~l~G~~GtGKThLa~a 118 (244)
T PRK07952 80 GQMNALSKA-RQYVEEFDGNI-ASFIFSGKPGTGKNHLAAA 118 (244)
T ss_pred hHHHHHHHH-HHHHHhhccCC-ceEEEECCCCCCHHHHHHH
Confidence 455566554 44555554443 3688999999999998744
No 54
>PRK08084 DNA replication initiation factor; Provisional
Probab=89.62 E-value=0.32 Score=46.59 Aligned_cols=37 Identities=16% Similarity=0.355 Sum_probs=23.6
Q ss_pred CHHHHHHHHHHHHHHHhhcCCceEEEeecCCCCCcceeecc
Q psy7270 69 TQAMVYSDIGEEMLEHAFEGYNVCIFAYGQTGAGKSYTMMG 109 (459)
Q Consensus 69 sQ~~vy~~~~~plv~~~l~G~n~ti~aYGqTgSGKT~Tm~G 109 (459)
.+...+..+ ..+.. ..-...++-||++|+||||.+.+
T Consensus 28 ~n~~a~~~l-~~~~~---~~~~~~l~l~Gp~G~GKThLl~a 64 (235)
T PRK08084 28 DNDSLLAAL-QNALR---QEHSGYIYLWSREGAGRSHLLHA 64 (235)
T ss_pred ccHHHHHHH-HHHHh---CCCCCeEEEECCCCCCHHHHHHH
Confidence 445566444 22322 22234789999999999999843
No 55
>PRK08116 hypothetical protein; Validated
Probab=89.43 E-value=0.29 Score=47.98 Aligned_cols=40 Identities=23% Similarity=0.367 Sum_probs=27.8
Q ss_pred CCHHHHHHHHHHHHHHHhhc--CCceEEEeecCCCCCcceeec
Q psy7270 68 ATQAMVYSDIGEEMLEHAFE--GYNVCIFAYGQTGAGKSYTMM 108 (459)
Q Consensus 68 ~sQ~~vy~~~~~plv~~~l~--G~n~ti~aYGqTgSGKT~Tm~ 108 (459)
..+...|.. +...++.+.+ ..|..++-||++|+||||.+.
T Consensus 91 ~~~~~a~~~-a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~ 132 (268)
T PRK08116 91 KGSEKAYKI-ARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAA 132 (268)
T ss_pred hHHHHHHHH-HHHHHHHHHhhccCCceEEEECCCCCCHHHHHH
Confidence 345555544 4667776654 345569999999999999873
No 56
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=89.33 E-value=0.26 Score=51.91 Aligned_cols=38 Identities=26% Similarity=0.479 Sum_probs=24.9
Q ss_pred CHHHHHHHHHHHHHHHhhcCCceEEEeecCCCCCcceeecc
Q psy7270 69 TQAMVYSDIGEEMLEHAFEGYNVCIFAYGQTGAGKSYTMMG 109 (459)
Q Consensus 69 sQ~~vy~~~~~plv~~~l~G~n~ti~aYGqTgSGKT~Tm~G 109 (459)
++...|..+ ..+.+. -..||. +|-||++|+||||-|..
T Consensus 112 ~n~~a~~~~-~~~~~~-~~~~n~-l~lyG~~G~GKTHLl~a 149 (440)
T PRK14088 112 GNSFAYHAA-LEVAKN-PGRYNP-LFIYGGVGLGKTHLLQS 149 (440)
T ss_pred chHHHHHHH-HHHHhC-cCCCCe-EEEEcCCCCcHHHHHHH
Confidence 455566543 333332 122675 99999999999999854
No 57
>PRK10436 hypothetical protein; Provisional
Probab=89.30 E-value=0.18 Score=53.22 Aligned_cols=28 Identities=29% Similarity=0.437 Sum_probs=23.4
Q ss_pred HHHHhhcCCceEEEeecCCCCCcceeec
Q psy7270 81 MLEHAFEGYNVCIFAYGQTGAGKSYTMM 108 (459)
Q Consensus 81 lv~~~l~G~n~ti~aYGqTgSGKT~Tm~ 108 (459)
.+..++..-++.|+..|+||||||.||.
T Consensus 209 ~l~~~~~~~~GliLvtGpTGSGKTTtL~ 236 (462)
T PRK10436 209 QFRQALQQPQGLILVTGPTGSGKTVTLY 236 (462)
T ss_pred HHHHHHHhcCCeEEEECCCCCChHHHHH
Confidence 4555667778999999999999999984
No 58
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=89.25 E-value=0.26 Score=51.98 Aligned_cols=39 Identities=23% Similarity=0.408 Sum_probs=23.9
Q ss_pred CHHHHHHHHHHHHHHHhhcCCceEEEeecCCCCCcceeecc
Q psy7270 69 TQAMVYSDIGEEMLEHAFEGYNVCIFAYGQTGAGKSYTMMG 109 (459)
Q Consensus 69 sQ~~vy~~~~~plv~~~l~G~n~ti~aYGqTgSGKT~Tm~G 109 (459)
.+...|..+ ..+.+.--..+| .++-||++|+||||.+..
T Consensus 129 ~n~~a~~~~-~~~~~~~~~~~~-~l~l~G~~G~GKThL~~a 167 (450)
T PRK00149 129 SNRLAHAAA-LAVAENPGKAYN-PLFIYGGVGLGKTHLLHA 167 (450)
T ss_pred CcHHHHHHH-HHHHhCcCccCC-eEEEECCCCCCHHHHHHH
Confidence 344455443 334433212344 478899999999998844
No 59
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=88.84 E-value=0.21 Score=54.32 Aligned_cols=28 Identities=21% Similarity=0.390 Sum_probs=23.8
Q ss_pred HHHHhhcCCceEEEeecCCCCCcceeec
Q psy7270 81 MLEHAFEGYNVCIFAYGQTGAGKSYTMM 108 (459)
Q Consensus 81 lv~~~l~G~n~ti~aYGqTgSGKT~Tm~ 108 (459)
.+..++..-++.|+..|+||||||.||.
T Consensus 307 ~l~~~~~~~~Glilv~G~tGSGKTTtl~ 334 (564)
T TIGR02538 307 LFLEAIHKPQGMVLVTGPTGSGKTVSLY 334 (564)
T ss_pred HHHHHHHhcCCeEEEECCCCCCHHHHHH
Confidence 4566777788999999999999999984
No 60
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=88.81 E-value=0.31 Score=50.57 Aligned_cols=39 Identities=23% Similarity=0.408 Sum_probs=23.3
Q ss_pred CHHHHHHHHHHHHHHHhhcCCceEEEeecCCCCCcceeecc
Q psy7270 69 TQAMVYSDIGEEMLEHAFEGYNVCIFAYGQTGAGKSYTMMG 109 (459)
Q Consensus 69 sQ~~vy~~~~~plv~~~l~G~n~ti~aYGqTgSGKT~Tm~G 109 (459)
.+...|..+ ..+...--..+| .++-||++|+||||.+..
T Consensus 117 ~n~~a~~~~-~~~~~~~~~~~n-~l~l~G~~G~GKThL~~a 155 (405)
T TIGR00362 117 SNRLAHAAA-LAVAENPGKAYN-PLFIYGGVGLGKTHLLHA 155 (405)
T ss_pred cHHHHHHHH-HHHHhCcCccCC-eEEEECCCCCcHHHHHHH
Confidence 444455433 344433111234 478899999999998743
No 61
>PRK08727 hypothetical protein; Validated
Probab=88.65 E-value=0.43 Score=45.62 Aligned_cols=19 Identities=21% Similarity=0.448 Sum_probs=16.1
Q ss_pred eEEEeecCCCCCcceeecc
Q psy7270 91 VCIFAYGQTGAGKSYTMMG 109 (459)
Q Consensus 91 ~ti~aYGqTgSGKT~Tm~G 109 (459)
-.|+-||++|+||||-+..
T Consensus 42 ~~l~l~G~~G~GKThL~~a 60 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALA 60 (233)
T ss_pred CeEEEECCCCCCHHHHHHH
Confidence 3599999999999998743
No 62
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=88.55 E-value=0.25 Score=52.65 Aligned_cols=28 Identities=29% Similarity=0.391 Sum_probs=23.5
Q ss_pred HHHHhhcCCceEEEeecCCCCCcceeec
Q psy7270 81 MLEHAFEGYNVCIFAYGQTGAGKSYTMM 108 (459)
Q Consensus 81 lv~~~l~G~n~ti~aYGqTgSGKT~Tm~ 108 (459)
.+..++..-++.|+..|+||||||.||.
T Consensus 233 ~l~~~~~~~~GlilitGptGSGKTTtL~ 260 (486)
T TIGR02533 233 RFERLIRRPHGIILVTGPTGSGKTTTLY 260 (486)
T ss_pred HHHHHHhcCCCEEEEEcCCCCCHHHHHH
Confidence 4556677778889999999999999994
No 63
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=88.28 E-value=0.18 Score=42.36 Aligned_cols=17 Identities=24% Similarity=0.429 Sum_probs=14.8
Q ss_pred EEeecCCCCCcceeecc
Q psy7270 93 IFAYGQTGAGKSYTMMG 109 (459)
Q Consensus 93 i~aYGqTgSGKT~Tm~G 109 (459)
++.+|+||||||+++..
T Consensus 3 ~~i~~~~G~GKT~~~~~ 19 (144)
T cd00046 3 VLLAAPTGSGKTLAALL 19 (144)
T ss_pred EEEECCCCCchhHHHHH
Confidence 57899999999999855
No 64
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=87.99 E-value=0.29 Score=50.22 Aligned_cols=26 Identities=23% Similarity=0.275 Sum_probs=19.7
Q ss_pred HHHHhhcCCceEEEeecCCCCCcceee
Q psy7270 81 MLEHAFEGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 81 lv~~~l~G~n~ti~aYGqTgSGKT~Tm 107 (459)
+++.++. .++.|+..|+||||||+||
T Consensus 141 ~~~~l~~-~~GlilI~G~TGSGKTT~l 166 (372)
T TIGR02525 141 LFNSLLP-AAGLGLICGETGSGKSTLA 166 (372)
T ss_pred HHHHHHh-cCCEEEEECCCCCCHHHHH
Confidence 3444443 4667889999999999998
No 65
>KOG0989|consensus
Probab=87.95 E-value=0.45 Score=47.01 Aligned_cols=35 Identities=23% Similarity=0.257 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHhhcC-CceEEEeecCCCCCcceee
Q psy7270 73 VYSDIGEEMLEHAFEG-YNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 73 vy~~~~~plv~~~l~G-~n~ti~aYGqTgSGKT~Tm 107 (459)
++++.+..++.+.+.+ .---.+-||+.|+|||.|.
T Consensus 39 ~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTSta 74 (346)
T KOG0989|consen 39 AGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTA 74 (346)
T ss_pred cchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHH
Confidence 3334333444444444 4456789999999999985
No 66
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=87.70 E-value=0.3 Score=49.63 Aligned_cols=29 Identities=34% Similarity=0.379 Sum_probs=22.0
Q ss_pred HHHHHhhcCCceEEEeecCCCCCcceeec
Q psy7270 80 EMLEHAFEGYNVCIFAYGQTGAGKSYTMM 108 (459)
Q Consensus 80 plv~~~l~G~n~ti~aYGqTgSGKT~Tm~ 108 (459)
|.+..++.--.+.|+-.|+||||||.||.
T Consensus 112 ~~l~~~~~~~~g~ili~G~tGSGKTT~l~ 140 (343)
T TIGR01420 112 PVLRELAERPRGLILVTGPTGSGKSTTLA 140 (343)
T ss_pred HHHHHHHhhcCcEEEEECCCCCCHHHHHH
Confidence 34555554445789999999999999983
No 67
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=87.53 E-value=0.34 Score=42.98 Aligned_cols=27 Identities=26% Similarity=0.449 Sum_probs=20.4
Q ss_pred HHHHhhcCCceEEEeecCCCCCcceeecc
Q psy7270 81 MLEHAFEGYNVCIFAYGQTGAGKSYTMMG 109 (459)
Q Consensus 81 lv~~~l~G~n~ti~aYGqTgSGKT~Tm~G 109 (459)
++..+.+|.| ++..|+||||||+....
T Consensus 7 ~~~~i~~~~~--~li~aptGsGKT~~~~~ 33 (169)
T PF00270_consen 7 AIEAIISGKN--VLISAPTGSGKTLAYIL 33 (169)
T ss_dssp HHHHHHTTSE--EEEECSTTSSHHHHHHH
T ss_pred HHHHHHcCCC--EEEECCCCCccHHHHHH
Confidence 3445556766 78899999999998754
No 68
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=87.52 E-value=0.22 Score=46.32 Aligned_cols=18 Identities=39% Similarity=0.571 Sum_probs=16.0
Q ss_pred ceEEEeecCCCCCcceee
Q psy7270 90 NVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 90 n~ti~aYGqTgSGKT~Tm 107 (459)
++.|+-.|+||||||.++
T Consensus 1 ~GlilI~GptGSGKTTll 18 (198)
T cd01131 1 RGLVLVTGPTGSGKSTTL 18 (198)
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 367889999999999998
No 69
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=87.32 E-value=0.33 Score=49.62 Aligned_cols=23 Identities=35% Similarity=0.468 Sum_probs=19.1
Q ss_pred hhcCCceEEEeecCCCCCcceee
Q psy7270 85 AFEGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 85 ~l~G~n~ti~aYGqTgSGKT~Tm 107 (459)
++.--++.|+-.|+||||||.||
T Consensus 129 ~~~~~~glilI~GpTGSGKTTtL 151 (358)
T TIGR02524 129 AIAPQEGIVFITGATGSGKSTLL 151 (358)
T ss_pred HHhccCCEEEEECCCCCCHHHHH
Confidence 34445789999999999999998
No 70
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=87.28 E-value=0.29 Score=47.67 Aligned_cols=28 Identities=25% Similarity=0.348 Sum_probs=20.1
Q ss_pred HHHHHhhcCC---ceEEEeecCCCCCcceee
Q psy7270 80 EMLEHAFEGY---NVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 80 plv~~~l~G~---n~ti~aYGqTgSGKT~Tm 107 (459)
+.+..++... .+.|+-.|.||||||.+|
T Consensus 114 ~~~~~~l~~~v~~~~~ili~G~tGSGKTT~l 144 (270)
T PF00437_consen 114 EEIAEFLRSAVRGRGNILISGPTGSGKTTLL 144 (270)
T ss_dssp HHHHHHHHHCHHTTEEEEEEESTTSSHHHHH
T ss_pred HHHHHHHhhccccceEEEEECCCccccchHH
Confidence 3444444444 667788899999999987
No 71
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=87.02 E-value=0.66 Score=45.08 Aligned_cols=39 Identities=18% Similarity=0.313 Sum_probs=27.6
Q ss_pred CCHHHHHHHHHHHHHHHhhcCCceEEEeecCCCCCcceeecc
Q psy7270 68 ATQAMVYSDIGEEMLEHAFEGYNVCIFAYGQTGAGKSYTMMG 109 (459)
Q Consensus 68 ~sQ~~vy~~~~~plv~~~l~G~n~ti~aYGqTgSGKT~Tm~G 109 (459)
..+..+|... ..+++.+-+|. .++-||++|+||||-..+
T Consensus 86 ~~~~~~l~~~-~~~~~~~~~~~--nl~l~G~~G~GKThLa~A 124 (254)
T COG1484 86 GIDKKALEDL-ASLVEFFERGE--NLVLLGPPGVGKTHLAIA 124 (254)
T ss_pred chhHHHHHHH-HHHHHHhccCC--cEEEECCCCCcHHHHHHH
Confidence 4677788766 45665555444 457899999999998744
No 72
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=87.02 E-value=0.2 Score=42.61 Aligned_cols=18 Identities=22% Similarity=0.420 Sum_probs=12.8
Q ss_pred ceEEEeecCCCCCcceee
Q psy7270 90 NVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 90 n~ti~aYGqTgSGKT~Tm 107 (459)
..+++.+|++|+|||.++
T Consensus 4 ~~~~~i~G~~G~GKT~~~ 21 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLI 21 (131)
T ss_dssp ---EEEEE-TTSSHHHHH
T ss_pred CcccEEEcCCCCCHHHHH
Confidence 357899999999999876
No 73
>PRK08939 primosomal protein DnaI; Reviewed
Probab=86.83 E-value=0.44 Score=47.63 Aligned_cols=40 Identities=25% Similarity=0.359 Sum_probs=28.2
Q ss_pred CHHHHHHHHHHHHHHHhhcC-CceEEEeecCCCCCcceeecc
Q psy7270 69 TQAMVYSDIGEEMLEHAFEG-YNVCIFAYGQTGAGKSYTMMG 109 (459)
Q Consensus 69 sQ~~vy~~~~~plv~~~l~G-~n~ti~aYGqTgSGKT~Tm~G 109 (459)
.+..++..+ ...++....| ..-.++-||++|+||||-+.+
T Consensus 135 ~~~~~~~~~-~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~A 175 (306)
T PRK08939 135 DRLDALMAA-LDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAA 175 (306)
T ss_pred HHHHHHHHH-HHHHHHhhccCCCCeEEEECCCCCCHHHHHHH
Confidence 456666643 5566665543 234699999999999998855
No 74
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=86.81 E-value=0.63 Score=44.03 Aligned_cols=20 Identities=20% Similarity=0.506 Sum_probs=16.8
Q ss_pred CCceEEEeecCCCCCcceee
Q psy7270 88 GYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 88 G~n~ti~aYGqTgSGKT~Tm 107 (459)
+.+..++-||++|+||||-+
T Consensus 40 ~~~~~~~l~G~~G~GKT~La 59 (227)
T PRK08903 40 VADRFFYLWGEAGSGRSHLL 59 (227)
T ss_pred CCCCeEEEECCCCCCHHHHH
Confidence 34557899999999999986
No 75
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=86.29 E-value=0.29 Score=41.07 Aligned_cols=19 Identities=26% Similarity=0.398 Sum_probs=15.9
Q ss_pred eEEEeecCCCCCcceeecc
Q psy7270 91 VCIFAYGQTGAGKSYTMMG 109 (459)
Q Consensus 91 ~ti~aYGqTgSGKT~Tm~G 109 (459)
..++-+|++|||||+++..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~ 21 (148)
T smart00382 3 EVILIVGPPGSGKTTLARA 21 (148)
T ss_pred CEEEEECCCCCcHHHHHHH
Confidence 4678899999999998843
No 76
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=86.28 E-value=0.51 Score=43.26 Aligned_cols=19 Identities=26% Similarity=0.520 Sum_probs=15.6
Q ss_pred eEEEeecCCCCCcceeecc
Q psy7270 91 VCIFAYGQTGAGKSYTMMG 109 (459)
Q Consensus 91 ~ti~aYGqTgSGKT~Tm~G 109 (459)
-.++-||++|+||||...+
T Consensus 48 ~~l~l~G~~G~GKThLa~a 66 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVA 66 (178)
T ss_dssp -EEEEEESTTSSHHHHHHH
T ss_pred eEEEEEhhHhHHHHHHHHH
Confidence 4589999999999998744
No 77
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=86.27 E-value=0.4 Score=44.56 Aligned_cols=27 Identities=15% Similarity=0.235 Sum_probs=19.2
Q ss_pred HHHHhhcCCceEEEeecCCCCCcceee
Q psy7270 81 MLEHAFEGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 81 lv~~~l~G~n~ti~aYGqTgSGKT~Tm 107 (459)
.|..++...+..++..|+.||||||+|
T Consensus 9 a~~~~l~~~~~~~~l~G~aGtGKT~~l 35 (196)
T PF13604_consen 9 AVRAILTSGDRVSVLQGPAGTGKTTLL 35 (196)
T ss_dssp HHHHHHHCTCSEEEEEESTTSTHHHHH
T ss_pred HHHHHHhcCCeEEEEEECCCCCHHHHH
Confidence 344555555445566899999999987
No 78
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=86.22 E-value=0.43 Score=46.66 Aligned_cols=28 Identities=29% Similarity=0.451 Sum_probs=21.6
Q ss_pred HHHHhhcCCceEEEeecCCCCCcceeec
Q psy7270 81 MLEHAFEGYNVCIFAYGQTGAGKSYTMM 108 (459)
Q Consensus 81 lv~~~l~G~n~ti~aYGqTgSGKT~Tm~ 108 (459)
.+..++..-.+.|+-.|+||||||.||.
T Consensus 71 ~l~~~~~~~~GlilisG~tGSGKTT~l~ 98 (264)
T cd01129 71 IFRKLLEKPHGIILVTGPTGSGKTTTLY 98 (264)
T ss_pred HHHHHHhcCCCEEEEECCCCCcHHHHHH
Confidence 3455566556778889999999999983
No 79
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=85.90 E-value=0.53 Score=49.69 Aligned_cols=39 Identities=21% Similarity=0.411 Sum_probs=23.9
Q ss_pred CHHHHHHHHHHHHHHHhhcCCceEEEeecCCCCCcceeecc
Q psy7270 69 TQAMVYSDIGEEMLEHAFEGYNVCIFAYGQTGAGKSYTMMG 109 (459)
Q Consensus 69 sQ~~vy~~~~~plv~~~l~G~n~ti~aYGqTgSGKT~Tm~G 109 (459)
+.+..|.. +..+...-=..|| .+|-||++|+||||.|..
T Consensus 122 ~n~~A~~a-a~~~a~~~~~~~n-pl~i~G~~G~GKTHLl~A 160 (450)
T PRK14087 122 SNEQAFIA-VQTVSKNPGISYN-PLFIYGESGMGKTHLLKA 160 (450)
T ss_pred cHHHHHHH-HHHHHhCcCcccC-ceEEECCCCCcHHHHHHH
Confidence 44556633 3444332111244 478999999999998854
No 80
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=85.79 E-value=2.1 Score=47.81 Aligned_cols=35 Identities=20% Similarity=0.285 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHh-hcCCceEEEeecCCCCCcceee
Q psy7270 72 MVYSDIGEEMLEHA-FEGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 72 ~vy~~~~~plv~~~-l~G~n~ti~aYGqTgSGKT~Tm 107 (459)
.||...-. ....+ ..+-|-||+-.|.+|||||.|+
T Consensus 67 Hif~~a~~-A~~~m~~~~~~Q~IiisGeSGsGKTe~~ 102 (689)
T PF00063_consen 67 HIFAVAQR-AYRQMLRTRQNQSIIISGESGSGKTETS 102 (689)
T ss_dssp SHHHHHHH-HHHHHHHHTSEEEEEEEESTTSSHHHHH
T ss_pred ccchhhhc-ccccccccccccceeeccccccccccch
Confidence 36754433 33333 4689999999999999999985
No 81
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=85.76 E-value=0.51 Score=48.82 Aligned_cols=71 Identities=15% Similarity=0.319 Sum_probs=38.2
Q ss_pred CceeecceeecCCCCCCCCCCCHHHHHHHHHHHHHHHhhcCCceEEEeecCCCCCcceeecc--CC--CCCCCCChHHHH
Q psy7270 48 HKNFNFDYSYYSHDPSASNFATQAMVYSDIGEEMLEHAFEGYNVCIFAYGQTGAGKSYTMMG--RQ--EVEGEEGIIPMI 123 (459)
Q Consensus 48 ~~~f~FD~vf~~~d~~~~~~~sQ~~vy~~~~~plv~~~l~G~n~ti~aYGqTgSGKT~Tm~G--~~--~~~~~~Giipr~ 123 (459)
...|+||...-. .+..-.|... . .+...-.+.---||-||++|+||||-|.. .. .......+++..
T Consensus 81 ~~~ytFdnFv~g--------~~N~~A~aa~-~-~va~~~g~~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~ 150 (408)
T COG0593 81 NPKYTFDNFVVG--------PSNRLAYAAA-K-AVAENPGGAYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLT 150 (408)
T ss_pred CCCCchhheeeC--------CchHHHHHHH-H-HHHhccCCcCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEecc
Confidence 456778765532 3445555332 1 22222222233589999999999999843 21 111234555555
Q ss_pred HHHHH
Q psy7270 124 CQDLF 128 (459)
Q Consensus 124 ~~~lF 128 (459)
.++.+
T Consensus 151 se~f~ 155 (408)
T COG0593 151 SEDFT 155 (408)
T ss_pred HHHHH
Confidence 55544
No 82
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=85.62 E-value=0.57 Score=45.48 Aligned_cols=34 Identities=29% Similarity=0.426 Sum_probs=26.9
Q ss_pred HHHHH-HHHHHHhhcCCceEEEeecCCCCCcceee
Q psy7270 74 YSDIG-EEMLEHAFEGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 74 y~~~~-~plv~~~l~G~n~ti~aYGqTgSGKT~Tm 107 (459)
|++.. .|+++++.--.-+.|+-.|+|||||+.||
T Consensus 110 ~eeL~LPevlk~la~~kRGLviiVGaTGSGKSTtm 144 (375)
T COG5008 110 FEELKLPEVLKDLALAKRGLVIIVGATGSGKSTTM 144 (375)
T ss_pred HHhcCCcHHHHHhhcccCceEEEECCCCCCchhhH
Confidence 44443 56777777777888999999999999987
No 83
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=85.19 E-value=0.65 Score=52.30 Aligned_cols=20 Identities=35% Similarity=0.620 Sum_probs=16.9
Q ss_pred CCceEEEeecCCCCCcceee
Q psy7270 88 GYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 88 G~n~ti~aYGqTgSGKT~Tm 107 (459)
|-+.+||-||+||+|||.|+
T Consensus 779 gpnnvLYIyG~PGTGKTATV 798 (1164)
T PTZ00112 779 GSNQILYISGMPGTGKTATV 798 (1164)
T ss_pred CCCceEEEECCCCCCHHHHH
Confidence 44567889999999999987
No 84
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=85.15 E-value=0.32 Score=46.04 Aligned_cols=15 Identities=53% Similarity=0.833 Sum_probs=12.8
Q ss_pred EEeecCCCCCcceee
Q psy7270 93 IFAYGQTGAGKSYTM 107 (459)
Q Consensus 93 i~aYGqTgSGKT~Tm 107 (459)
+.-+|.||||||+|+
T Consensus 26 ~~I~G~TGsGKS~~~ 40 (229)
T PF01935_consen 26 IAIFGTTGSGKSNTV 40 (229)
T ss_pred EEEECCCCCCHHHHH
Confidence 346699999999998
No 85
>PF12846 AAA_10: AAA-like domain
Probab=84.75 E-value=0.36 Score=47.16 Aligned_cols=19 Identities=32% Similarity=0.511 Sum_probs=16.1
Q ss_pred ceEEEeecCCCCCcceeec
Q psy7270 90 NVCIFAYGQTGAGKSYTMM 108 (459)
Q Consensus 90 n~ti~aYGqTgSGKT~Tm~ 108 (459)
|..++..|.||||||++|.
T Consensus 1 n~h~~i~G~tGsGKT~~~~ 19 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLK 19 (304)
T ss_pred CCeEEEECCCCCcHHHHHH
Confidence 4567889999999999873
No 86
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=84.54 E-value=0.9 Score=42.67 Aligned_cols=21 Identities=24% Similarity=0.526 Sum_probs=18.4
Q ss_pred cCCceEEEeecCCCCCcceee
Q psy7270 87 EGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 87 ~G~n~ti~aYGqTgSGKT~Tm 107 (459)
.+....|+-||++|+||||.+
T Consensus 35 ~~~~~~lll~G~~G~GKT~la 55 (226)
T TIGR03420 35 GKGDRFLYLWGESGSGKSHLL 55 (226)
T ss_pred cCCCCeEEEECCCCCCHHHHH
Confidence 566778999999999999987
No 87
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=84.49 E-value=1.9 Score=41.50 Aligned_cols=28 Identities=25% Similarity=0.475 Sum_probs=21.8
Q ss_pred HHHhhcCCce-EEEeecCCCCCcceeecc
Q psy7270 82 LEHAFEGYNV-CIFAYGQTGAGKSYTMMG 109 (459)
Q Consensus 82 v~~~l~G~n~-ti~aYGqTgSGKT~Tm~G 109 (459)
...+++|..+ -++-||..|||||.++-.
T Consensus 43 t~~Fl~G~pannvLL~G~rGtGKSSlVka 71 (249)
T PF05673_consen 43 TEQFLQGLPANNVLLWGARGTGKSSLVKA 71 (249)
T ss_pred HHHHHcCCCCcceEEecCCCCCHHHHHHH
Confidence 3677888765 377799999999988743
No 88
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=83.75 E-value=1.8 Score=41.24 Aligned_cols=41 Identities=22% Similarity=0.361 Sum_probs=27.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHhhc-C-CceEEEeecCCCCCccee
Q psy7270 65 SNFATQAMVYSDIGEEMLEHAFE-G-YNVCIFAYGQTGAGKSYT 106 (459)
Q Consensus 65 ~~~~sQ~~vy~~~~~plv~~~l~-G-~n~ti~aYGqTgSGKT~T 106 (459)
+++..|+.+-... +.+++.+.. | .=..++-||+.|.|||.-
T Consensus 24 ~efiGQ~~l~~~l-~i~i~aa~~r~~~l~h~lf~GPPG~GKTTL 66 (233)
T PF05496_consen 24 DEFIGQEHLKGNL-KILIRAAKKRGEALDHMLFYGPPGLGKTTL 66 (233)
T ss_dssp CCS-S-HHHHHHH-HHHHHHHHCTTS---EEEEESSTTSSHHHH
T ss_pred HHccCcHHHHhhh-HHHHHHHHhcCCCcceEEEECCCccchhHH
Confidence 3457899998764 677777764 2 234688899999999853
No 89
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=83.50 E-value=0.42 Score=44.55 Aligned_cols=16 Identities=44% Similarity=0.613 Sum_probs=14.4
Q ss_pred EEEeecCCCCCcceee
Q psy7270 92 CIFAYGQTGAGKSYTM 107 (459)
Q Consensus 92 ti~aYGqTgSGKT~Tm 107 (459)
.|+-.|+||+|||.|+
T Consensus 3 vi~lvGptGvGKTTt~ 18 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTI 18 (196)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCchHhHH
Confidence 4778899999999997
No 90
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=83.29 E-value=21 Score=38.92 Aligned_cols=25 Identities=28% Similarity=0.264 Sum_probs=15.2
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhhc
Q psy7270 345 DANAKLIRELKEEIQRLRDLLKQEG 369 (459)
Q Consensus 345 ~~~~~~i~~l~~ei~~L~~~l~~~~ 369 (459)
+....++.....++..|...|....
T Consensus 247 ~~~~~~i~~a~~~i~~L~~~l~~l~ 271 (582)
T PF09731_consen 247 SDLNSLIAHAKERIDALQKELAELK 271 (582)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566666777777766665433
No 91
>PRK10884 SH3 domain-containing protein; Provisional
Probab=83.17 E-value=15 Score=34.60 Aligned_cols=24 Identities=17% Similarity=0.290 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchh
Q psy7270 348 AKLIRELKEEIQRLRDLLKQEGIE 371 (459)
Q Consensus 348 ~~~i~~l~~ei~~L~~~l~~~~~~ 371 (459)
...+.+++.|++.|+.+|.....+
T Consensus 92 ~~rlp~le~el~~l~~~l~~~~~~ 115 (206)
T PRK10884 92 RTRVPDLENQVKTLTDKLNNIDNT 115 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhH
Confidence 446678888999998888765443
No 92
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=82.88 E-value=1 Score=43.55 Aligned_cols=23 Identities=26% Similarity=0.406 Sum_probs=17.7
Q ss_pred hhcCCceEEEeecCCCCCcceee
Q psy7270 85 AFEGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 85 ~l~G~n~ti~aYGqTgSGKT~Tm 107 (459)
.+....+.++-+|++|+|||+.+
T Consensus 38 ~~~~~~~~~~l~G~~G~GKTtl~ 60 (269)
T TIGR03015 38 GLSQREGFILITGEVGAGKTTLI 60 (269)
T ss_pred HHhcCCCEEEEEcCCCCCHHHHH
Confidence 34444567888999999999876
No 93
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins. Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of
Probab=82.85 E-value=6 Score=44.31 Aligned_cols=34 Identities=21% Similarity=0.304 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHhh-cCCceEEEeecCCCCCcceee
Q psy7270 73 VYSDIGEEMLEHAF-EGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 73 vy~~~~~plv~~~l-~G~n~ti~aYGqTgSGKT~Tm 107 (459)
||.-. ......++ .|.|.||+.-|.+|||||.|.
T Consensus 74 ifaiA-~~Ay~~m~~~~~~QsIiisGESGaGKTes~ 108 (717)
T cd01382 74 VFAIA-DKAYRDMKVLKMSQSIIVSGESGAGKTENT 108 (717)
T ss_pred HHHHH-HHHHHHHHhcCCCCeEEEecCCCCChhHHH
Confidence 56433 33344433 699999999999999999986
No 94
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=82.80 E-value=0.65 Score=46.25 Aligned_cols=27 Identities=30% Similarity=0.425 Sum_probs=20.5
Q ss_pred HHHHHhhcCCceEEEeecCCCCCcceee
Q psy7270 80 EMLEHAFEGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 80 plv~~~l~G~n~ti~aYGqTgSGKT~Tm 107 (459)
.++..++.+ ...|+-.|+||||||.+|
T Consensus 123 ~~L~~~v~~-~~~ilI~G~tGSGKTTll 149 (299)
T TIGR02782 123 DVLREAVLA-RKNILVVGGTGSGKTTLA 149 (299)
T ss_pred HHHHHHHHc-CCeEEEECCCCCCHHHHH
Confidence 455555654 456788999999999987
No 95
>PRK09183 transposase/IS protein; Provisional
Probab=82.67 E-value=0.74 Score=44.86 Aligned_cols=21 Identities=29% Similarity=0.469 Sum_probs=16.2
Q ss_pred cCCceEEEeecCCCCCcceeecc
Q psy7270 87 EGYNVCIFAYGQTGAGKSYTMMG 109 (459)
Q Consensus 87 ~G~n~ti~aYGqTgSGKT~Tm~G 109 (459)
.|.| |+-+|++|+||||-+.+
T Consensus 101 ~~~~--v~l~Gp~GtGKThLa~a 121 (259)
T PRK09183 101 RNEN--IVLLGPSGVGKTHLAIA 121 (259)
T ss_pred cCCe--EEEEeCCCCCHHHHHHH
Confidence 4554 56799999999998744
No 96
>PF13479 AAA_24: AAA domain
Probab=82.31 E-value=0.61 Score=43.94 Aligned_cols=20 Identities=30% Similarity=0.562 Sum_probs=16.6
Q ss_pred ceEEEeecCCCCCcceeecc
Q psy7270 90 NVCIFAYGQTGAGKSYTMMG 109 (459)
Q Consensus 90 n~ti~aYGqTgSGKT~Tm~G 109 (459)
+..++-||++|+|||++...
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~ 22 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAAS 22 (213)
T ss_pred ceEEEEECCCCCCHHHHHHh
Confidence 45789999999999987644
No 97
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=82.13 E-value=0.56 Score=39.60 Aligned_cols=15 Identities=33% Similarity=0.527 Sum_probs=13.1
Q ss_pred EEeecCCCCCcceee
Q psy7270 93 IFAYGQTGAGKSYTM 107 (459)
Q Consensus 93 i~aYGqTgSGKT~Tm 107 (459)
|+-||+.|+|||+..
T Consensus 1 ill~G~~G~GKT~l~ 15 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLA 15 (132)
T ss_dssp EEEESSTTSSHHHHH
T ss_pred CEEECcCCCCeeHHH
Confidence 678999999999865
No 98
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=81.87 E-value=1.1 Score=44.86 Aligned_cols=21 Identities=19% Similarity=0.316 Sum_probs=16.6
Q ss_pred cCCceEEEeecCCCCCcceee
Q psy7270 87 EGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 87 ~G~n~ti~aYGqTgSGKT~Tm 107 (459)
.|....++-||++|+|||+++
T Consensus 33 ~~~~~~lll~Gp~GtGKT~la 53 (337)
T PRK12402 33 SPNLPHLLVQGPPGSGKTAAV 53 (337)
T ss_pred CCCCceEEEECCCCCCHHHHH
Confidence 444345888999999999876
No 99
>PRK06921 hypothetical protein; Provisional
Probab=81.80 E-value=0.99 Score=44.15 Aligned_cols=32 Identities=22% Similarity=0.270 Sum_probs=22.3
Q ss_pred HHHHHHHhhc---CCceEEEeecCCCCCcceeecc
Q psy7270 78 GEEMLEHAFE---GYNVCIFAYGQTGAGKSYTMMG 109 (459)
Q Consensus 78 ~~plv~~~l~---G~n~ti~aYGqTgSGKT~Tm~G 109 (459)
+...++++-. +....++-||++|+||||.+..
T Consensus 102 ~~~~~~~f~~~~~~~~~~l~l~G~~G~GKThLa~a 136 (266)
T PRK06921 102 AVEYVKDFEKIQESRKNSIALLGQPGSGKTHLLTA 136 (266)
T ss_pred HHHHHHHHHHhcccCCCeEEEECCCCCcHHHHHHH
Confidence 3456665532 2345688999999999998844
No 100
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=81.73 E-value=0.84 Score=45.92 Aligned_cols=27 Identities=30% Similarity=0.420 Sum_probs=19.6
Q ss_pred HHHHHhhcCCceEEEeecCCCCCcceee
Q psy7270 80 EMLEHAFEGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 80 plv~~~l~G~n~ti~aYGqTgSGKT~Tm 107 (459)
.++..++.+ ...|+-.|.||||||++|
T Consensus 139 ~~L~~~v~~-~~~ilI~G~tGSGKTTll 165 (319)
T PRK13894 139 EAIIAAVRA-HRNILVIGGTGSGKTTLV 165 (319)
T ss_pred HHHHHHHHc-CCeEEEECCCCCCHHHHH
Confidence 455666665 355667799999999776
No 101
>PHA00729 NTP-binding motif containing protein
Probab=81.55 E-value=1.3 Score=42.12 Aligned_cols=30 Identities=17% Similarity=0.282 Sum_probs=22.3
Q ss_pred HHHHHHHhhcCCceEEEeecCCCCCcceee
Q psy7270 78 GEEMLEHAFEGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 78 ~~plv~~~l~G~n~ti~aYGqTgSGKT~Tm 107 (459)
++-++..+..|-=..|+.+|.+|+||||-.
T Consensus 5 ~k~~~~~l~~~~f~nIlItG~pGvGKT~LA 34 (226)
T PHA00729 5 AKKIVSAYNNNGFVSAVIFGKQGSGKTTYA 34 (226)
T ss_pred HHHHHHHHhcCCeEEEEEECCCCCCHHHHH
Confidence 445666665543357999999999999875
No 102
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=81.39 E-value=0.8 Score=42.67 Aligned_cols=26 Identities=23% Similarity=0.434 Sum_probs=16.2
Q ss_pred HHHhhcCCceEEEeecCCCCCcceeec
Q psy7270 82 LEHAFEGYNVCIFAYGQTGAGKSYTMM 108 (459)
Q Consensus 82 v~~~l~G~n~ti~aYGqTgSGKT~Tm~ 108 (459)
|..++.--. ..+..|+.|||||+|+.
T Consensus 10 i~~~~~~~~-~~~i~GpPGTGKT~~l~ 35 (236)
T PF13086_consen 10 IQSALSSNG-ITLIQGPPGTGKTTTLA 35 (236)
T ss_dssp HHHHCTSSE--EEEE-STTSSHHHHHH
T ss_pred HHHHHcCCC-CEEEECCCCCChHHHHH
Confidence 344443333 45668999999999873
No 103
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=81.19 E-value=0.78 Score=42.76 Aligned_cols=28 Identities=29% Similarity=0.450 Sum_probs=20.3
Q ss_pred HHHHHhhcCCceEEEeecCCCCCcceee
Q psy7270 80 EMLEHAFEGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 80 plv~~~l~G~n~ti~aYGqTgSGKT~Tm 107 (459)
.+.+.+-.|.+..++-||+.|+|||+.|
T Consensus 10 ~l~~~l~~~~~~~~~l~G~rg~GKTsLl 37 (234)
T PF01637_consen 10 KLKELLESGPSQHILLYGPRGSGKTSLL 37 (234)
T ss_dssp HHHHCHHH--SSEEEEEESTTSSHHHHH
T ss_pred HHHHHHHhhcCcEEEEEcCCcCCHHHHH
Confidence 3444444566889999999999999876
No 104
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=80.63 E-value=1.7 Score=44.92 Aligned_cols=18 Identities=33% Similarity=0.529 Sum_probs=16.2
Q ss_pred ceEEEeecCCCCCcceee
Q psy7270 90 NVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 90 n~ti~aYGqTgSGKT~Tm 107 (459)
...|+.+|+||+|||.|+
T Consensus 174 ~~vi~lvGptGvGKTTT~ 191 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTI 191 (388)
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 467889999999999997
No 105
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=80.54 E-value=1.4 Score=45.19 Aligned_cols=36 Identities=25% Similarity=0.443 Sum_probs=27.5
Q ss_pred CCHHHHHHHHHHHHHHHhhcCCceEEEeecCCCCCcceee
Q psy7270 68 ATQAMVYSDIGEEMLEHAFEGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 68 ~sQ~~vy~~~~~plv~~~l~G~n~ti~aYGqTgSGKT~Tm 107 (459)
..|..+|+.+...+. ......+|.-|+.|+||||.+
T Consensus 4 ~eQ~~~~~~v~~~~~----~~~~~~~fv~G~~GtGKs~l~ 39 (364)
T PF05970_consen 4 EEQRRVFDTVIEAIE----NEEGLNFFVTGPAGTGKSFLI 39 (364)
T ss_pred HHHHHHHHHHHHHHH----ccCCcEEEEEcCCCCChhHHH
Confidence 469999988865443 234456788999999999986
No 106
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=80.43 E-value=0.93 Score=45.64 Aligned_cols=27 Identities=26% Similarity=0.448 Sum_probs=19.0
Q ss_pred HHHHHhhcCCceEEEeecCCCCCcceee
Q psy7270 80 EMLEHAFEGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 80 plv~~~l~G~n~ti~aYGqTgSGKT~Tm 107 (459)
.++..++.+ ...|+-.|.||||||.+|
T Consensus 135 ~~L~~~v~~-~~nilI~G~tGSGKTTll 161 (323)
T PRK13833 135 SVIRSAIDS-RLNIVISGGTGSGKTTLA 161 (323)
T ss_pred HHHHHHHHc-CCeEEEECCCCCCHHHHH
Confidence 344444443 235788899999999988
No 107
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=80.39 E-value=1.1 Score=41.95 Aligned_cols=19 Identities=26% Similarity=0.517 Sum_probs=13.7
Q ss_pred CceEEEeecCCCCCcceee
Q psy7270 89 YNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 89 ~n~ti~aYGqTgSGKT~Tm 107 (459)
.+-.+++.|+.||||||.-
T Consensus 18 ~~~~v~~~G~AGTGKT~LA 36 (205)
T PF02562_consen 18 NNDLVIVNGPAGTGKTFLA 36 (205)
T ss_dssp H-SEEEEE--TTSSTTHHH
T ss_pred hCCeEEEECCCCCcHHHHH
Confidence 5558999999999999865
No 108
>KOG0926|consensus
Probab=80.34 E-value=1.1 Score=49.42 Aligned_cols=30 Identities=27% Similarity=0.574 Sum_probs=21.3
Q ss_pred ceEEEeecCCCCCcceee--------ccCCCCCCCCChH
Q psy7270 90 NVCIFAYGQTGAGKSYTM--------MGRQEVEGEEGII 120 (459)
Q Consensus 90 n~ti~aYGqTgSGKT~Tm--------~G~~~~~~~~Gii 120 (459)
|-.|+.+|+||||||.-+ ||....+ ++|+|
T Consensus 271 n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~~-~~gmI 308 (1172)
T KOG0926|consen 271 NPVVIICGETGSGKTTQVPQFLYEAGFASEQSS-SPGMI 308 (1172)
T ss_pred CCeEEEecCCCCCccccchHHHHHcccCCccCC-CCCee
Confidence 445777899999999876 5554433 37776
No 109
>cd01378 MYSc_type_I Myosin motor domain, type I myosins. Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon
Probab=80.28 E-value=6.8 Score=43.57 Aligned_cols=34 Identities=26% Similarity=0.492 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHhh-cCCceEEEeecCCCCCcceee
Q psy7270 73 VYSDIGEEMLEHAF-EGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 73 vy~~~~~plv~~~l-~G~n~ti~aYGqTgSGKT~Tm 107 (459)
||.-. ......++ .|.|-||+.-|.+|||||.|.
T Consensus 69 ifaiA-~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 103 (674)
T cd01378 69 IYALA-DNAYRSMKSENENQCVIISGESGAGKTEAA 103 (674)
T ss_pred HHHHH-HHHHHHHHHcCCCceEEEEcCCCCCcchHH
Confidence 66433 33333333 599999999999999999986
No 110
>PHA02244 ATPase-like protein
Probab=80.27 E-value=1.8 Score=44.26 Aligned_cols=37 Identities=16% Similarity=0.213 Sum_probs=23.6
Q ss_pred CHHHHHHHHHHHHHHHhhcCCceEEEeecCCCCCcceee
Q psy7270 69 TQAMVYSDIGEEMLEHAFEGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 69 sQ~~vy~~~~~plv~~~l~G~n~ti~aYGqTgSGKT~Tm 107 (459)
.+...+......+...+-.|.+. +-+|+||+|||+-.
T Consensus 100 g~sp~~~~~~~ri~r~l~~~~PV--LL~GppGtGKTtLA 136 (383)
T PHA02244 100 ASNPTFHYETADIAKIVNANIPV--FLKGGAGSGKNHIA 136 (383)
T ss_pred CCCHHHHHHHHHHHHHHhcCCCE--EEECCCCCCHHHHH
Confidence 33445544444555555567665 45899999999765
No 111
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=79.93 E-value=1.5 Score=43.43 Aligned_cols=40 Identities=25% Similarity=0.296 Sum_probs=26.0
Q ss_pred CCCHHHHHHHHHHHHHHHhhc--CCceEEEeecCCCCCcceee
Q psy7270 67 FATQAMVYSDIGEEMLEHAFE--GYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 67 ~~sQ~~vy~~~~~plv~~~l~--G~n~ti~aYGqTgSGKT~Tm 107 (459)
+..|+++.+.+ ..++..... +....++-||++|+|||+..
T Consensus 6 ~iG~~~~~~~l-~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la 47 (305)
T TIGR00635 6 FIGQEKVKEQL-QLFIEAAKMRQEALDHLLLYGPPGLGKTTLA 47 (305)
T ss_pred HcCHHHHHHHH-HHHHHHHHhcCCCCCeEEEECCCCCCHHHHH
Confidence 36788888765 334433322 22234677999999999876
No 112
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=79.85 E-value=1.1 Score=45.06 Aligned_cols=27 Identities=30% Similarity=0.389 Sum_probs=20.4
Q ss_pred HHHHHhhcCCceEEEeecCCCCCcceee
Q psy7270 80 EMLEHAFEGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 80 plv~~~l~G~n~ti~aYGqTgSGKT~Tm 107 (459)
.++..+..+. +.|+-.|.||||||.++
T Consensus 164 ~~L~~av~~r-~NILisGGTGSGKTTlL 190 (355)
T COG4962 164 KFLRRAVGIR-CNILISGGTGSGKTTLL 190 (355)
T ss_pred HHHHHHHhhc-eeEEEeCCCCCCHHHHH
Confidence 3444555555 78899999999999876
No 113
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=79.64 E-value=1.2 Score=40.82 Aligned_cols=27 Identities=33% Similarity=0.384 Sum_probs=18.9
Q ss_pred HHHHHhhcCCceEEEeecCCCCCcceee
Q psy7270 80 EMLEHAFEGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 80 plv~~~l~G~n~ti~aYGqTgSGKT~Tm 107 (459)
+++..++.. ...++-.|+||||||.+|
T Consensus 16 ~~l~~~v~~-g~~i~I~G~tGSGKTTll 42 (186)
T cd01130 16 AYLWLAVEA-RKNILISGGTGSGKTTLL 42 (186)
T ss_pred HHHHHHHhC-CCEEEEECCCCCCHHHHH
Confidence 444455543 345677899999999876
No 114
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=79.50 E-value=0.79 Score=44.39 Aligned_cols=18 Identities=28% Similarity=0.551 Sum_probs=15.1
Q ss_pred ceEEEeecCCCCCcceee
Q psy7270 90 NVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 90 n~ti~aYGqTgSGKT~Tm 107 (459)
.-+|+-||++|+|||++-
T Consensus 151 PknVLFyGppGTGKTm~A 168 (368)
T COG1223 151 PKNVLFYGPPGTGKTMMA 168 (368)
T ss_pred cceeEEECCCCccHHHHH
Confidence 347899999999998764
No 115
>smart00242 MYSc Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Probab=79.48 E-value=8.3 Score=42.95 Aligned_cols=36 Identities=22% Similarity=0.266 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHhhcCCceEEEeecCCCCCcceee
Q psy7270 72 MVYSDIGEEMLEHAFEGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 72 ~vy~~~~~plv~~~l~G~n~ti~aYGqTgSGKT~Tm 107 (459)
.||.-.-.....-+-.|.|.||+.-|.+|||||.|.
T Consensus 74 HifavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 109 (677)
T smart00242 74 HVFAIADNAYRNMLNDKENQSIIISGESGAGKTENT 109 (677)
T ss_pred CHHHHHHHHHHHHHhcCCCceEEEecCCCCcchHHH
Confidence 366444333333333699999999999999999986
No 116
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=79.31 E-value=0.88 Score=38.11 Aligned_cols=16 Identities=38% Similarity=0.513 Sum_probs=13.6
Q ss_pred EEEeecCCCCCcceee
Q psy7270 92 CIFAYGQTGAGKSYTM 107 (459)
Q Consensus 92 ti~aYGqTgSGKT~Tm 107 (459)
.|+-.|++|||||+..
T Consensus 1 vI~I~G~~gsGKST~a 16 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLA 16 (121)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred CEEEECCCCCCHHHHH
Confidence 4788999999999764
No 117
>cd00124 MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila
Probab=79.23 E-value=10 Score=42.28 Aligned_cols=34 Identities=24% Similarity=0.428 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHhh-cCCceEEEeecCCCCCcceee
Q psy7270 73 VYSDIGEEMLEHAF-EGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 73 vy~~~~~plv~~~l-~G~n~ti~aYGqTgSGKT~Tm 107 (459)
||.- +.....+++ .|.|.||+.-|.+|||||.|.
T Consensus 69 ifav-A~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 103 (679)
T cd00124 69 VFAI-ADRAYRNMLRDRRNQSIIISGESGAGKTENT 103 (679)
T ss_pred HHHH-HHHHHHHHHhcCCCceEEEecCCCCCchHHH
Confidence 6643 344444444 599999999999999999886
No 118
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=79.09 E-value=4.6 Score=41.25 Aligned_cols=17 Identities=29% Similarity=0.608 Sum_probs=14.9
Q ss_pred eEEEeecCCCCCcceee
Q psy7270 91 VCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 91 ~ti~aYGqTgSGKT~Tm 107 (459)
..|+-||++|+|||+..
T Consensus 157 ~gvLL~GppGtGKT~la 173 (364)
T TIGR01242 157 KGVLLYGPPGTGKTLLA 173 (364)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 45899999999999876
No 119
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=78.89 E-value=1.3 Score=39.58 Aligned_cols=26 Identities=23% Similarity=0.335 Sum_probs=17.8
Q ss_pred HHhhcCCceEEEeecCCCCCcceeecc
Q psy7270 83 EHAFEGYNVCIFAYGQTGAGKSYTMMG 109 (459)
Q Consensus 83 ~~~l~G~n~ti~aYGqTgSGKT~Tm~G 109 (459)
..++.+. ..++..|+||||||.++..
T Consensus 18 ~~~~~~~-~~~~i~~~~GsGKT~~~~~ 43 (201)
T smart00487 18 EALLSGL-RDVILAAPTGSGKTLAALL 43 (201)
T ss_pred HHHHcCC-CcEEEECCCCCchhHHHHH
Confidence 3444442 3457778999999998754
No 120
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=78.81 E-value=2.2 Score=42.13 Aligned_cols=17 Identities=41% Similarity=0.569 Sum_probs=14.4
Q ss_pred EEEeecCCCCCcceeec
Q psy7270 92 CIFAYGQTGAGKSYTMM 108 (459)
Q Consensus 92 ti~aYGqTgSGKT~Tm~ 108 (459)
.|+-.|+||+|||+|+.
T Consensus 196 vi~~vGptGvGKTTt~~ 212 (282)
T TIGR03499 196 VIALVGPTGVGKTTTLA 212 (282)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 56677999999999983
No 121
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=78.57 E-value=0.87 Score=44.71 Aligned_cols=21 Identities=19% Similarity=0.328 Sum_probs=16.4
Q ss_pred CceEEEeecCCCCCcceeecc
Q psy7270 89 YNVCIFAYGQTGAGKSYTMMG 109 (459)
Q Consensus 89 ~n~ti~aYGqTgSGKT~Tm~G 109 (459)
.++.++..|..|||||+||..
T Consensus 12 ~~~~~lV~a~AGSGKT~~l~~ 32 (315)
T PF00580_consen 12 TEGPLLVNAGAGSGKTTTLLE 32 (315)
T ss_dssp -SSEEEEEE-TTSSHHHHHHH
T ss_pred CCCCEEEEeCCCCCchHHHHH
Confidence 677888889999999999843
No 122
>cd01377 MYSc_type_II Myosin motor domain, type II myosins. Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro
Probab=78.55 E-value=11 Score=42.05 Aligned_cols=35 Identities=20% Similarity=0.393 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHhh-cCCceEEEeecCCCCCcceee
Q psy7270 72 MVYSDIGEEMLEHAF-EGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 72 ~vy~~~~~plv~~~l-~G~n~ti~aYGqTgSGKT~Tm 107 (459)
.||.. +......++ .|.|-||+.-|.+|||||.|.
T Consensus 73 Hiyai-A~~Ay~~m~~~~~~QsIiiSGESGAGKTes~ 108 (693)
T cd01377 73 HIFAI-ADNAYRSMLQDRENQSILITGESGAGKTENT 108 (693)
T ss_pred CHHHH-HHHHHHHHHhcCCCceEEEEcCCCCCchHHH
Confidence 36643 344444444 599999999999999999885
No 123
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=78.45 E-value=1 Score=41.01 Aligned_cols=17 Identities=24% Similarity=0.354 Sum_probs=14.7
Q ss_pred eEEEeecCCCCCcceee
Q psy7270 91 VCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 91 ~ti~aYGqTgSGKT~Tm 107 (459)
+.++-+|+||+|||++.
T Consensus 4 ~~~ll~GpsGvGKT~la 20 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELA 20 (171)
T ss_dssp EEEEEESSTTSSHHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 56889999999999864
No 124
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=78.36 E-value=0.77 Score=41.33 Aligned_cols=26 Identities=27% Similarity=0.463 Sum_probs=14.3
Q ss_pred HHHhhcCCceEEEeecCCCCCcceee
Q psy7270 82 LEHAFEGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 82 v~~~l~G~n~ti~aYGqTgSGKT~Tm 107 (459)
++....|-..+++-+|.+|+|||+.+
T Consensus 16 l~~~~~~~~~~~ll~G~~G~GKT~ll 41 (185)
T PF13191_consen 16 LDAAQSGSPRNLLLTGESGSGKTSLL 41 (185)
T ss_dssp TGGTSS-----EEE-B-TTSSHHHHH
T ss_pred HHHHHcCCCcEEEEECCCCCCHHHHH
Confidence 33334566778999999999999875
No 125
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=78.31 E-value=1.9 Score=45.44 Aligned_cols=51 Identities=20% Similarity=0.306 Sum_probs=29.7
Q ss_pred ceeecceeecCCCCCCCCCCCHHHHHHHHHHHHHHHh--hcC--CceEEEeecCCCCCcceeecc
Q psy7270 49 KNFNFDYSYYSHDPSASNFATQAMVYSDIGEEMLEHA--FEG--YNVCIFAYGQTGAGKSYTMMG 109 (459)
Q Consensus 49 ~~f~FD~vf~~~d~~~~~~~sQ~~vy~~~~~plv~~~--l~G--~n~ti~aYGqTgSGKT~Tm~G 109 (459)
..|+||.-.-. .+....|.. +..+.... ..| ||. ++-||++|+||||-+..
T Consensus 106 ~~~tFdnFv~g--------~~N~~a~~~-a~~~a~~~~~~~~~~~np-l~L~G~~G~GKTHLl~A 160 (445)
T PRK12422 106 PLMTFANFLVT--------PENDLPHRI-LQEFTKVSEQGKGFPFNP-IYLFGPEGSGKTHLMQA 160 (445)
T ss_pred ccccccceeeC--------CcHHHHHHH-HHHHHhccccccCCCCce-EEEEcCCCCCHHHHHHH
Confidence 45677754421 344444533 34444332 223 454 67899999999998744
No 126
>KOG0340|consensus
Probab=78.26 E-value=2.2 Score=43.00 Aligned_cols=30 Identities=20% Similarity=0.379 Sum_probs=24.5
Q ss_pred HHHHHHhhcCCceEEEeecCCCCCcceeeccC
Q psy7270 79 EEMLEHAFEGYNVCIFAYGQTGAGKSYTMMGR 110 (459)
Q Consensus 79 ~plv~~~l~G~n~ti~aYGqTgSGKT~Tm~G~ 110 (459)
..+|..+|+|.+| +....||||||..+-++
T Consensus 35 ~~cIpkILeGrdc--ig~AkTGsGKT~AFaLP 64 (442)
T KOG0340|consen 35 QACIPKILEGRDC--IGCAKTGSGKTAAFALP 64 (442)
T ss_pred hhhhHHHhccccc--ccccccCCCcchhhhHH
Confidence 3567888999998 56778999999988664
No 127
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act
Probab=77.88 E-value=12 Score=41.68 Aligned_cols=34 Identities=29% Similarity=0.472 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHhh-cCCceEEEeecCCCCCcceee
Q psy7270 73 VYSDIGEEMLEHAF-EGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 73 vy~~~~~plv~~~l-~G~n~ti~aYGqTgSGKT~Tm 107 (459)
||... .....+++ .|.|.||+.-|.+|||||.|.
T Consensus 71 ifaiA-~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 105 (674)
T cd01384 71 VFAIA-DAAYRAMINEGKSQSILVSGESGAGKTETT 105 (674)
T ss_pred HHHHH-HHHHHHHHHcCCCceEEEECCCCCCchhHH
Confidence 55433 33333333 599999999999999999986
No 128
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=77.84 E-value=0.94 Score=39.07 Aligned_cols=15 Identities=40% Similarity=0.570 Sum_probs=13.3
Q ss_pred EEeecCCCCCcceee
Q psy7270 93 IFAYGQTGAGKSYTM 107 (459)
Q Consensus 93 i~aYGqTgSGKT~Tm 107 (459)
|+..|++|||||+-.
T Consensus 2 ii~~G~pgsGKSt~a 16 (143)
T PF13671_consen 2 IILCGPPGSGKSTLA 16 (143)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 788999999999864
No 129
>KOG0971|consensus
Probab=77.47 E-value=33 Score=38.75 Aligned_cols=43 Identities=21% Similarity=0.428 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Q psy7270 409 DLKQEMQQRLRDLEEQYKREKNEADQAF--EQQRKSSLRRISKQM 451 (459)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~--~~~~~~~~~~~~~~~ 451 (459)
+.+.++.++..+|+.++.+.+.|.+++. .++.+.++...++.|
T Consensus 269 EfkSkim~qqa~Lqrel~raR~e~keaqe~ke~~k~emad~ad~i 313 (1243)
T KOG0971|consen 269 EFKSKIMEQQADLQRELKRARKEAKEAQEAKERYKEEMADTADAI 313 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555555554444443332 234444444444444
No 130
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=77.29 E-value=1.6 Score=40.07 Aligned_cols=23 Identities=26% Similarity=0.511 Sum_probs=17.3
Q ss_pred HHHhhcCCceEEEeecCCCCCccee
Q psy7270 82 LEHAFEGYNVCIFAYGQTGAGKSYT 106 (459)
Q Consensus 82 v~~~l~G~n~ti~aYGqTgSGKT~T 106 (459)
++.++.|.| ++..++||+|||.+
T Consensus 30 ~~~~~~~~~--~li~~~TG~GKT~~ 52 (203)
T cd00268 30 IPPLLSGRD--VIGQAQTGSGKTAA 52 (203)
T ss_pred HHHHhcCCc--EEEECCCCCcHHHH
Confidence 344455877 57788999999977
No 131
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=77.28 E-value=0.76 Score=38.18 Aligned_cols=27 Identities=41% Similarity=0.674 Sum_probs=19.7
Q ss_pred EEeecCCCCCcceeeccCCCCCCCCChHHHHHHHHHHHHh
Q psy7270 93 IFAYGQTGAGKSYTMMGRQEVEGEEGIIPMICQDLFKRIK 132 (459)
Q Consensus 93 i~aYGqTgSGKT~Tm~G~~~~~~~~Giipr~~~~lF~~i~ 132 (459)
|+-||++|.|||+.+ -.++.+|.+.+.
T Consensus 1 I~i~G~~G~GKS~l~-------------~~l~~~l~~~~~ 27 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLA-------------KELAKDLLKHIG 27 (107)
T ss_pred CEEECCCCCCHHHHH-------------HHHHHHHHHHhc
Confidence 578999999999876 235666666653
No 132
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=77.17 E-value=6.1 Score=40.32 Aligned_cols=59 Identities=17% Similarity=0.179 Sum_probs=37.5
Q ss_pred CHHHHHHHHHHHHHHHhhcC---CceEEEeecCCCCCcce---------------------eecc----CCCCCCCCChH
Q psy7270 69 TQAMVYSDIGEEMLEHAFEG---YNVCIFAYGQTGAGKSY---------------------TMMG----RQEVEGEEGII 120 (459)
Q Consensus 69 sQ~~vy~~~~~plv~~~l~G---~n~ti~aYGqTgSGKT~---------------------Tm~G----~~~~~~~~Gii 120 (459)
.+++.-+.++. .+.....| -+-.+.-.|++|||||. |+-| ++-.+..-||+
T Consensus 55 G~~~~i~~lv~-~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~~~~~sp~~e~Pl~l~ 133 (361)
T smart00763 55 GMEEAIERFVN-YFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKWNGEESPMHEDPLHLF 133 (361)
T ss_pred CcHHHHHHHHH-HHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEecCCCCCCccCCcccC
Confidence 45666666654 33444444 34668889999999984 3334 33333446888
Q ss_pred HHHHHHHH
Q psy7270 121 PMICQDLF 128 (459)
Q Consensus 121 pr~~~~lF 128 (459)
|....+.|
T Consensus 134 p~~~r~~~ 141 (361)
T smart00763 134 PDELREDL 141 (361)
T ss_pred CHHHHHHH
Confidence 88877777
No 133
>PRK13764 ATPase; Provisional
Probab=77.01 E-value=1.3 Score=48.29 Aligned_cols=20 Identities=35% Similarity=0.316 Sum_probs=16.8
Q ss_pred CCceEEEeecCCCCCcceee
Q psy7270 88 GYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 88 G~n~ti~aYGqTgSGKT~Tm 107 (459)
.....|+..|+||||||+++
T Consensus 255 ~~~~~ILIsG~TGSGKTTll 274 (602)
T PRK13764 255 ERAEGILIAGAPGAGKSTFA 274 (602)
T ss_pred hcCCEEEEECCCCCCHHHHH
Confidence 34455899999999999998
No 134
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=77.00 E-value=0.98 Score=45.90 Aligned_cols=27 Identities=22% Similarity=0.351 Sum_probs=18.8
Q ss_pred HHHHHhhcCCceEEEeecCCCCCcceee
Q psy7270 80 EMLEHAFEGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 80 plv~~~l~G~n~ti~aYGqTgSGKT~Tm 107 (459)
.++..++. ....|+..|+||||||++|
T Consensus 153 ~~l~~~v~-~~~nilI~G~tGSGKTTll 179 (344)
T PRK13851 153 AFLHACVV-GRLTMLLCGPTGSGKTTMS 179 (344)
T ss_pred HHHHHHHH-cCCeEEEECCCCccHHHHH
Confidence 34444443 2345788899999999987
No 135
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=76.62 E-value=1.7 Score=44.04 Aligned_cols=27 Identities=37% Similarity=0.389 Sum_probs=19.0
Q ss_pred HHHHHhhcCCceEEEeecCCCCCcceee
Q psy7270 80 EMLEHAFEGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 80 plv~~~l~G~n~ti~aYGqTgSGKT~Tm 107 (459)
.++..++.+. ..|+..|+||||||.+|
T Consensus 151 ~~L~~~v~~~-~nili~G~tgSGKTTll 177 (332)
T PRK13900 151 EFLEHAVISK-KNIIISGGTSTGKTTFT 177 (332)
T ss_pred HHHHHHHHcC-CcEEEECCCCCCHHHHH
Confidence 4444444432 44778899999999987
No 136
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=76.53 E-value=0.9 Score=42.24 Aligned_cols=16 Identities=38% Similarity=0.598 Sum_probs=12.5
Q ss_pred EEEeecCCCCCcceee
Q psy7270 92 CIFAYGQTGAGKSYTM 107 (459)
Q Consensus 92 ti~aYGqTgSGKT~Tm 107 (459)
-++.+|+||||||.+|
T Consensus 40 h~li~G~tgsGKS~~l 55 (205)
T PF01580_consen 40 HLLIAGATGSGKSTLL 55 (205)
T ss_dssp SEEEE--TTSSHHHHH
T ss_pred eEEEEcCCCCCccHHH
Confidence 4789999999999987
No 137
>PRK06547 hypothetical protein; Provisional
Probab=76.46 E-value=2.4 Score=38.53 Aligned_cols=28 Identities=18% Similarity=0.305 Sum_probs=19.2
Q ss_pred HHHHHhhcCCceEEEeecCCCCCcceee
Q psy7270 80 EMLEHAFEGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 80 plv~~~l~G~n~ti~aYGqTgSGKT~Tm 107 (459)
.++..+..+.---|.-+|.+|||||+..
T Consensus 5 ~~~~~~~~~~~~~i~i~G~~GsGKTt~a 32 (172)
T PRK06547 5 LIAARLCGGGMITVLIDGRSGSGKTTLA 32 (172)
T ss_pred HHHHHhhcCCCEEEEEECCCCCCHHHHH
Confidence 3444555555556677799999999764
No 138
>PRK13342 recombination factor protein RarA; Reviewed
Probab=76.17 E-value=1.4 Score=45.84 Aligned_cols=39 Identities=18% Similarity=0.280 Sum_probs=25.1
Q ss_pred CCHHHHHHHHHHHHHHHhhcCCceEEEeecCCCCCcceee
Q psy7270 68 ATQAMVYSDIGEEMLEHAFEGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 68 ~sQ~~vy~~~~~plv~~~l~G~n~ti~aYGqTgSGKT~Tm 107 (459)
..|+.+... ..++...+-.+.-..++-||++|+|||+..
T Consensus 15 vGq~~~v~~-~~~L~~~i~~~~~~~ilL~GppGtGKTtLA 53 (413)
T PRK13342 15 VGQEHLLGP-GKPLRRMIEAGRLSSMILWGPPGTGKTTLA 53 (413)
T ss_pred cCcHHHhCc-chHHHHHHHcCCCceEEEECCCCCCHHHHH
Confidence 456666543 233444444555557777999999999876
No 139
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=75.99 E-value=3.8 Score=43.07 Aligned_cols=16 Identities=31% Similarity=0.661 Sum_probs=14.0
Q ss_pred EEEeecCCCCCcceee
Q psy7270 92 CIFAYGQTGAGKSYTM 107 (459)
Q Consensus 92 ti~aYGqTgSGKT~Tm 107 (459)
.|+-||++|+|||++.
T Consensus 219 gVLL~GPPGTGKT~LA 234 (438)
T PTZ00361 219 GVILYGPPGTGKTLLA 234 (438)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788999999999876
No 140
>PTZ00424 helicase 45; Provisional
Probab=75.58 E-value=1.7 Score=44.67 Aligned_cols=26 Identities=27% Similarity=0.580 Sum_probs=19.9
Q ss_pred HHHHHhhcCCceEEEeecCCCCCcceee
Q psy7270 80 EMLEHAFEGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 80 plv~~~l~G~n~ti~aYGqTgSGKT~Tm 107 (459)
..+..+++|.|. +..++||||||.+.
T Consensus 57 ~ai~~i~~~~d~--ii~apTGsGKT~~~ 82 (401)
T PTZ00424 57 RGIKPILDGYDT--IGQAQSGTGKTATF 82 (401)
T ss_pred HHHHHHhCCCCE--EEECCCCChHHHHH
Confidence 345667789985 46789999999764
No 141
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=75.26 E-value=1.8 Score=45.63 Aligned_cols=23 Identities=30% Similarity=0.541 Sum_probs=18.3
Q ss_pred HHHhhcCCceEEEeecCCCCCccee
Q psy7270 82 LEHAFEGYNVCIFAYGQTGAGKSYT 106 (459)
Q Consensus 82 v~~~l~G~n~ti~aYGqTgSGKT~T 106 (459)
+..+++|.| +++.++||||||.+
T Consensus 35 i~~~l~g~d--vi~~a~TGsGKT~a 57 (460)
T PRK11776 35 LPAILAGKD--VIAQAKTGSGKTAA 57 (460)
T ss_pred HHHHhcCCC--EEEECCCCCcHHHH
Confidence 445678888 67788999999965
No 142
>KOG0742|consensus
Probab=74.54 E-value=4.2 Score=41.96 Aligned_cols=41 Identities=29% Similarity=0.546 Sum_probs=26.0
Q ss_pred EEEeecCCCCCcce-------------e-eccCCCCC-CCCChHHHHHHHHHHHHhhc
Q psy7270 92 CIFAYGQTGAGKSY-------------T-MMGRQEVE-GEEGIIPMICQDLFKRIKDT 134 (459)
Q Consensus 92 ti~aYGqTgSGKT~-------------T-m~G~~~~~-~~~Giipr~~~~lF~~i~~~ 134 (459)
.|+-||+.|+|||- . |.|.+-.| +..|+ -.++.||+.....
T Consensus 386 NilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPlG~qaV--TkiH~lFDWakkS 441 (630)
T KOG0742|consen 386 NILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPLGAQAV--TKIHKLFDWAKKS 441 (630)
T ss_pred heeeeCCCCCCchHHHHHHHhhcCCceehhcCCCccccchHHH--HHHHHHHHHHhhc
Confidence 58999999999983 2 34432211 11222 3688999987654
No 143
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=74.49 E-value=2.9 Score=43.42 Aligned_cols=18 Identities=28% Similarity=0.549 Sum_probs=15.5
Q ss_pred ceEEEeecCCCCCcceee
Q psy7270 90 NVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 90 n~ti~aYGqTgSGKT~Tm 107 (459)
...|+-||++|+|||+..
T Consensus 179 pkgvLL~GppGTGKT~LA 196 (398)
T PTZ00454 179 PRGVLLYGPPGTGKTMLA 196 (398)
T ss_pred CceEEEECCCCCCHHHHH
Confidence 357899999999999876
No 144
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=74.38 E-value=2 Score=46.10 Aligned_cols=29 Identities=31% Similarity=0.539 Sum_probs=22.4
Q ss_pred HHHHHHhhcCCc--eEEEeecCCCCCcceee
Q psy7270 79 EEMLEHAFEGYN--VCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 79 ~plv~~~l~G~n--~ti~aYGqTgSGKT~Tm 107 (459)
+..++..+.|.. ..++-+||+|+|||.|+
T Consensus 32 ~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv 62 (519)
T PF03215_consen 32 RSWLEEMFSGSSPKRILLLTGPSGCGKTTTV 62 (519)
T ss_pred HHHHHHHhccCCCcceEEEECCCCCCHHHHH
Confidence 556666666653 46788999999999997
No 145
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=74.36 E-value=1.3 Score=45.44 Aligned_cols=18 Identities=33% Similarity=0.396 Sum_probs=15.9
Q ss_pred ceEEEeecCCCCCcceee
Q psy7270 90 NVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 90 n~ti~aYGqTgSGKT~Tm 107 (459)
...++-+|+||+|||+|+
T Consensus 137 g~ii~lvGptGvGKTTti 154 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTT 154 (374)
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 457788999999999998
No 146
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=74.31 E-value=2.5 Score=43.51 Aligned_cols=37 Identities=27% Similarity=0.321 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHhhcC----CceEEEeecCCCCCcceee
Q psy7270 71 AMVYSDIGEEMLEHAFEG----YNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 71 ~~vy~~~~~plv~~~l~G----~n~ti~aYGqTgSGKT~Tm 107 (459)
...|.....-+...+.+- ...-|.-.||||.|||.|+
T Consensus 180 ~~~~~~~l~~~~~~~~~~~~~~~~~vi~LVGPTGVGKTTTl 220 (407)
T COG1419 180 LRYFSEKLRKLLLSLIENLIVEQKRVIALVGPTGVGKTTTL 220 (407)
T ss_pred hhhHHHHHHHHHHhhccccccccCcEEEEECCCCCcHHHHH
Confidence 344444444444444444 2667778899999999998
No 147
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=73.90 E-value=2 Score=44.83 Aligned_cols=24 Identities=25% Similarity=0.529 Sum_probs=19.3
Q ss_pred HHHHhhcCCceEEEeecCCCCCccee
Q psy7270 81 MLEHAFEGYNVCIFAYGQTGAGKSYT 106 (459)
Q Consensus 81 lv~~~l~G~n~ti~aYGqTgSGKT~T 106 (459)
.+..+++|-| +++.++||||||.+
T Consensus 31 ai~~~~~g~d--~l~~apTGsGKT~~ 54 (434)
T PRK11192 31 AIPPALDGRD--VLGSAPTGTGKTAA 54 (434)
T ss_pred HHHHHhCCCC--EEEECCCCChHHHH
Confidence 3455678887 78889999999986
No 148
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=73.83 E-value=1.2 Score=38.51 Aligned_cols=15 Identities=27% Similarity=0.532 Sum_probs=13.2
Q ss_pred EEeecCCCCCcceee
Q psy7270 93 IFAYGQTGAGKSYTM 107 (459)
Q Consensus 93 i~aYGqTgSGKT~Tm 107 (459)
|+-+|++|+|||+.+
T Consensus 2 vlL~G~~G~GKt~l~ 16 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLA 16 (139)
T ss_dssp EEEEESSSSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 688999999998765
No 149
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=73.72 E-value=1.5 Score=43.68 Aligned_cols=16 Identities=38% Similarity=0.625 Sum_probs=13.9
Q ss_pred ceEEEeecCCCCCcce
Q psy7270 90 NVCIFAYGQTGAGKSY 105 (459)
Q Consensus 90 n~ti~aYGqTgSGKT~ 105 (459)
-+.|+..||||||||+
T Consensus 97 KSNILLiGPTGsGKTl 112 (408)
T COG1219 97 KSNILLIGPTGSGKTL 112 (408)
T ss_pred eccEEEECCCCCcHHH
Confidence 3568999999999996
No 150
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=73.46 E-value=2.5 Score=42.56 Aligned_cols=39 Identities=23% Similarity=0.281 Sum_probs=25.0
Q ss_pred CCHHHHHHHHHHHHHHHhhc--CCceEEEeecCCCCCcceee
Q psy7270 68 ATQAMVYSDIGEEMLEHAFE--GYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 68 ~sQ~~vy~~~~~plv~~~l~--G~n~ti~aYGqTgSGKT~Tm 107 (459)
..|+++-+.+ ..++..... +....++-||++|+|||+..
T Consensus 28 vG~~~~~~~l-~~~l~~~~~~~~~~~~~ll~GppG~GKT~la 68 (328)
T PRK00080 28 IGQEKVKENL-KIFIEAAKKRGEALDHVLLYGPPGLGKTTLA 68 (328)
T ss_pred cCcHHHHHHH-HHHHHHHHhcCCCCCcEEEECCCCccHHHHH
Confidence 5677766554 334443322 22245778999999999876
No 151
>PRK10536 hypothetical protein; Provisional
Probab=73.44 E-value=2.2 Score=41.46 Aligned_cols=18 Identities=39% Similarity=0.717 Sum_probs=15.7
Q ss_pred ceEEEeecCCCCCcceee
Q psy7270 90 NVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 90 n~ti~aYGqTgSGKT~Tm 107 (459)
+.-|+..|++||||||..
T Consensus 74 ~~lV~i~G~aGTGKT~La 91 (262)
T PRK10536 74 KQLIFATGEAGCGKTWIS 91 (262)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 348899999999999975
No 152
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=73.02 E-value=3.6 Score=39.91 Aligned_cols=18 Identities=22% Similarity=0.385 Sum_probs=15.2
Q ss_pred ceEEEeecCCCCCcceee
Q psy7270 90 NVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 90 n~ti~aYGqTgSGKT~Tm 107 (459)
...++-||++|+|||++.
T Consensus 42 ~~~vll~GppGtGKTtlA 59 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVA 59 (261)
T ss_pred cceEEEEcCCCCCHHHHH
Confidence 345788999999999886
No 153
>PF06048 DUF927: Domain of unknown function (DUF927); InterPro: IPR009270 This entry is represented by Bacteriophage PT1028, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=72.87 E-value=3.2 Score=41.00 Aligned_cols=33 Identities=18% Similarity=0.335 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHhhcCCceEEEeecCCCCCcceee
Q psy7270 74 YSDIGEEMLEHAFEGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 74 y~~~~~plv~~~l~G~n~ti~aYGqTgSGKT~Tm 107 (459)
+...+.|++ ..+.--+..|--||+|++|||.++
T Consensus 178 ~~afa~pLL-~~l~~~~~~~hl~G~Ss~GKTt~~ 210 (286)
T PF06048_consen 178 CAAFAAPLL-SLLGVEGFGFHLYGQSSSGKTTAL 210 (286)
T ss_pred HHHHHHHHH-HHhCCCceEEEEEeCCCCCHHHHH
Confidence 344456666 556667778999999999999865
No 154
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=72.78 E-value=1.5 Score=36.68 Aligned_cols=15 Identities=33% Similarity=0.372 Sum_probs=12.9
Q ss_pred EEeecCCCCCcceee
Q psy7270 93 IFAYGQTGAGKSYTM 107 (459)
Q Consensus 93 i~aYGqTgSGKT~Tm 107 (459)
|+-.|.+|||||+..
T Consensus 1 I~i~G~~GsGKtTia 15 (129)
T PF13238_consen 1 IGISGIPGSGKTTIA 15 (129)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred CEEECCCCCCHHHHH
Confidence 677899999999865
No 155
>KOG0736|consensus
Probab=72.67 E-value=5.1 Score=44.46 Aligned_cols=35 Identities=26% Similarity=0.391 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHH--HHhhcCCc--eEEEeecCCCCCcce
Q psy7270 71 AMVYSDIGEEML--EHAFEGYN--VCIFAYGQTGAGKSY 105 (459)
Q Consensus 71 ~~vy~~~~~plv--~~~l~G~n--~ti~aYGqTgSGKT~ 105 (459)
.+|-+.+.-|+- +-+-.|.- +.|+-||+.|+|||-
T Consensus 682 ~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTL 720 (953)
T KOG0736|consen 682 TEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTL 720 (953)
T ss_pred HHHHHHhcCcccChhhhhccccccceeEEECCCCCchHH
Confidence 344444444443 22234544 679999999999994
No 156
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=72.43 E-value=3.9 Score=41.94 Aligned_cols=36 Identities=14% Similarity=0.313 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHhhc----CCceEEEeecCCCCCccee
Q psy7270 71 AMVYSDIGEEMLEHAFE----GYNVCIFAYGQTGAGKSYT 106 (459)
Q Consensus 71 ~~vy~~~~~plv~~~l~----G~n~ti~aYGqTgSGKT~T 106 (459)
..+.+.++..++.+++. -.---+.-||+.|+|||+.
T Consensus 125 p~f~dk~~~hi~kn~l~~~~ik~PlgllL~GPPGcGKTll 164 (413)
T PLN00020 125 PAFMDKVAVHIAKNFLALPNIKVPLILGIWGGKGQGKSFQ 164 (413)
T ss_pred HHHHHHHHHHHHhhhhhccCCCCCeEEEeeCCCCCCHHHH
Confidence 55667777778888774 2334678899999999975
No 157
>KOG2129|consensus
Probab=71.90 E-value=54 Score=33.79 Aligned_cols=34 Identities=29% Similarity=0.357 Sum_probs=22.1
Q ss_pred ccccceecccch---HHHHHHHHHHHHHHHHHHHhhc
Q psy7270 336 IVCKAIVNEDAN---AKLIRELKEEIQRLRDLLKQEG 369 (459)
Q Consensus 336 I~n~~~~n~~~~---~~~i~~l~~ei~~L~~~l~~~~ 369 (459)
|.+.|-+..|.. ...|+.|+.||++||..|....
T Consensus 237 ia~~~~~~gD~a~~~~~hi~~l~~EveRlrt~l~~Aq 273 (552)
T KOG2129|consen 237 IAKIPDVHGDEAAAEKLHIDKLQAEVERLRTYLSRAQ 273 (552)
T ss_pred hhcCccccCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444433 2357889999999999986543
No 158
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=71.56 E-value=2.4 Score=44.16 Aligned_cols=25 Identities=32% Similarity=0.489 Sum_probs=18.7
Q ss_pred HHHHhhcCCceEEEeecCCCCCcceee
Q psy7270 81 MLEHAFEGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 81 lv~~~l~G~n~ti~aYGqTgSGKT~Tm 107 (459)
.+..++.|.|. ++-++||||||.+.
T Consensus 38 aip~il~g~dv--i~~ApTGsGKTla~ 62 (423)
T PRK04837 38 ALPLTLAGRDV--AGQAQTGTGKTMAF 62 (423)
T ss_pred HHHHHhCCCcE--EEECCCCchHHHHH
Confidence 34556789884 66779999999753
No 159
>KOG2373|consensus
Probab=71.52 E-value=3.9 Score=41.23 Aligned_cols=27 Identities=26% Similarity=0.567 Sum_probs=20.6
Q ss_pred HHHHHhhcCCc---eEEEeecCCCCCcceee
Q psy7270 80 EMLEHAFEGYN---VCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 80 plv~~~l~G~n---~ti~aYGqTgSGKT~Tm 107 (459)
|++...+.|.- -|||+ |+||||||.-|
T Consensus 261 pvLNk~LkGhR~GElTvlT-GpTGsGKTTFl 290 (514)
T KOG2373|consen 261 PVLNKYLKGHRPGELTVLT-GPTGSGKTTFL 290 (514)
T ss_pred hHHHHHhccCCCCceEEEe-cCCCCCceeEe
Confidence 66777777765 46665 99999999755
No 160
>PLN03025 replication factor C subunit; Provisional
Probab=71.34 E-value=3.3 Score=41.49 Aligned_cols=21 Identities=24% Similarity=0.477 Sum_probs=15.7
Q ss_pred CCceEEEeecCCCCCcceeec
Q psy7270 88 GYNVCIFAYGQTGAGKSYTMM 108 (459)
Q Consensus 88 G~n~ti~aYGqTgSGKT~Tm~ 108 (459)
|.-..++-||++|+|||++..
T Consensus 32 ~~~~~lll~Gp~G~GKTtla~ 52 (319)
T PLN03025 32 GNMPNLILSGPPGTGKTTSIL 52 (319)
T ss_pred CCCceEEEECCCCCCHHHHHH
Confidence 333346679999999998864
No 161
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=70.97 E-value=1.8 Score=40.12 Aligned_cols=19 Identities=37% Similarity=0.399 Sum_probs=14.3
Q ss_pred CceEEEeecCCCCCcceee
Q psy7270 89 YNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 89 ~n~ti~aYGqTgSGKT~Tm 107 (459)
....||..|+.|||||+.+
T Consensus 14 ~P~~~i~aG~~GsGKSt~~ 32 (199)
T PF06414_consen 14 KPTLIIIAGQPGSGKSTLA 32 (199)
T ss_dssp S-EEEEEES-TTSTTHHHH
T ss_pred CCEEEEEeCCCCCCHHHHH
Confidence 3457899999999998876
No 162
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=70.89 E-value=2.7 Score=47.02 Aligned_cols=39 Identities=18% Similarity=0.247 Sum_probs=24.0
Q ss_pred CHHHHHHHHHHHHHHHhhcCCceEEEeecCCCCCcceeec
Q psy7270 69 TQAMVYSDIGEEMLEHAFEGYNVCIFAYGQTGAGKSYTMM 108 (459)
Q Consensus 69 sQ~~vy~~~~~plv~~~l~G~n~ti~aYGqTgSGKT~Tm~ 108 (459)
.|+.+-.. ...+...+-.|.-..++-||++|+|||++..
T Consensus 32 GQe~ii~~-~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~ 70 (725)
T PRK13341 32 GQDHILGE-GRLLRRAIKADRVGSLILYGPPGVGKTTLAR 70 (725)
T ss_pred CcHHHhhh-hHHHHHHHhcCCCceEEEECCCCCCHHHHHH
Confidence 45555432 1223333334555578889999999998763
No 163
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=70.78 E-value=2.8 Score=44.00 Aligned_cols=30 Identities=23% Similarity=0.303 Sum_probs=21.0
Q ss_pred cCCCcceeeeeccCCCCCCHHHHHHHHHHHHHhh
Q psy7270 301 LGGNSKTAMIAAISPADINYDETLSTLRYADRAK 334 (459)
Q Consensus 301 LgGns~t~~I~~isp~~~~~~eTlsTL~fa~rak 334 (459)
+.-.....+|||++..+.. +..|.+|-+=|
T Consensus 320 f~iP~Nl~IIgTMNt~Drs----~~~lD~AlrRR 349 (459)
T PRK11331 320 FYVPENVYIIGLMNTADRS----LAVVDYALRRR 349 (459)
T ss_pred ccCCCCeEEEEecCccccc----hhhccHHHHhh
Confidence 4556789999999988753 44566665433
No 164
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=70.41 E-value=2.2 Score=43.82 Aligned_cols=38 Identities=18% Similarity=0.323 Sum_probs=28.6
Q ss_pred CCHHHHHHHHHHHHHHHhhcCCceEEEeecCCCCCccee
Q psy7270 68 ATQAMVYSDIGEEMLEHAFEGYNVCIFAYGQTGAGKSYT 106 (459)
Q Consensus 68 ~sQ~~vy~~~~~plv~~~l~G~n~ti~aYGqTgSGKT~T 106 (459)
..|+.+... +.|+-..+-.|.=.+.+-||+.|+|||.-
T Consensus 27 vGQ~HLlg~-~~~lrr~v~~~~l~SmIl~GPPG~GKTTl 64 (436)
T COG2256 27 VGQEHLLGE-GKPLRRAVEAGHLHSMILWGPPGTGKTTL 64 (436)
T ss_pred cChHhhhCC-CchHHHHHhcCCCceeEEECCCCCCHHHH
Confidence 467777755 35665556667778889999999999963
No 165
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=70.23 E-value=2.9 Score=44.15 Aligned_cols=24 Identities=33% Similarity=0.547 Sum_probs=18.9
Q ss_pred HHHHhhcCCceEEEeecCCCCCccee
Q psy7270 81 MLEHAFEGYNVCIFAYGQTGAGKSYT 106 (459)
Q Consensus 81 lv~~~l~G~n~ti~aYGqTgSGKT~T 106 (459)
.+..+++|.| |++-.+||||||.+
T Consensus 31 ai~~il~g~d--vlv~apTGsGKTla 54 (456)
T PRK10590 31 AIPAVLEGRD--LMASAQTGTGKTAG 54 (456)
T ss_pred HHHHHhCCCC--EEEECCCCCcHHHH
Confidence 3455678987 67778999999976
No 166
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=70.08 E-value=3.4 Score=46.53 Aligned_cols=25 Identities=36% Similarity=0.492 Sum_probs=20.5
Q ss_pred HHHHhhcCCceEEEeecCCCCCcceee
Q psy7270 81 MLEHAFEGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 81 lv~~~l~G~n~ti~aYGqTgSGKT~Tm 107 (459)
.+..+.+|.|+.|.| |||||||-+-
T Consensus 30 a~~~i~~G~nvLiiA--PTGsGKTeAA 54 (814)
T COG1201 30 AIPEIHSGENVLIIA--PTGSGKTEAA 54 (814)
T ss_pred HHHHHhCCCceEEEc--CCCCChHHHH
Confidence 455667999998887 9999999763
No 167
>KOG2543|consensus
Probab=70.08 E-value=2 Score=43.85 Aligned_cols=19 Identities=32% Similarity=0.740 Sum_probs=15.8
Q ss_pred CceEEEeecCCCCCcceee
Q psy7270 89 YNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 89 ~n~ti~aYGqTgSGKT~Tm 107 (459)
+-+.|+-||.+||||||++
T Consensus 29 ~PS~~~iyG~sgTGKT~~~ 47 (438)
T KOG2543|consen 29 IPSIVHIYGHSGTGKTYLV 47 (438)
T ss_pred cceeEEEeccCCCchhHHH
Confidence 3445699999999999986
No 168
>KOG1532|consensus
Probab=69.70 E-value=1.2e+02 Score=30.01 Aligned_cols=35 Identities=26% Similarity=0.509 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy7270 419 RDLEEQYKREKNEADQAFEQQRKSSLRRISKQMKL 453 (459)
Q Consensus 419 ~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 453 (459)
.+-...+++.+++.+.+.+++.+.++..+.+-|-.
T Consensus 268 ~~ykp~~Ek~k~~k~~~ee~~k~k~le~l~kdm~~ 302 (366)
T KOG1532|consen 268 EEYKPEYEKKKAEKRLAEEERKKKQLEKLMKDMHV 302 (366)
T ss_pred HHhhhHHHHHHHHHHHHHHHhhhhhHHHHHhccCc
Confidence 33444555666666677777888888887776644
No 169
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=69.69 E-value=3.7 Score=40.58 Aligned_cols=21 Identities=24% Similarity=0.305 Sum_probs=16.4
Q ss_pred cCCceEEEeecCCCCCcceee
Q psy7270 87 EGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 87 ~G~n~ti~aYGqTgSGKT~Tm 107 (459)
.|...-++-||+.|+|||+++
T Consensus 35 ~~~~~~~ll~G~~G~GKt~~~ 55 (319)
T PRK00440 35 EKNMPHLLFAGPPGTGKTTAA 55 (319)
T ss_pred CCCCCeEEEECCCCCCHHHHH
Confidence 454445788999999999875
No 170
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=69.39 E-value=3.6 Score=40.90 Aligned_cols=21 Identities=19% Similarity=0.298 Sum_probs=16.4
Q ss_pred cCC-ceEEEeecCCCCCcceee
Q psy7270 87 EGY-NVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 87 ~G~-n~ti~aYGqTgSGKT~Tm 107 (459)
.|. ...++-||++|+|||+.+
T Consensus 39 ~~~~~~~lll~G~~G~GKT~la 60 (316)
T PHA02544 39 KGRIPNMLLHSPSPGTGKTTVA 60 (316)
T ss_pred cCCCCeEEEeeCcCCCCHHHHH
Confidence 454 456677999999999876
No 171
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=69.37 E-value=2.7 Score=49.34 Aligned_cols=34 Identities=26% Similarity=0.326 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhcCCceEEEeecCCCCCcceeecc
Q psy7270 75 SDIGEEMLEHAFEGYNVCIFAYGQTGAGKSYTMMG 109 (459)
Q Consensus 75 ~~~~~plv~~~l~G~n~ti~aYGqTgSGKT~Tm~G 109 (459)
...+..+++.+.+|....++. .+||||||+||.+
T Consensus 419 ~~AI~ai~~a~~~g~r~~Ll~-maTGSGKT~tai~ 452 (1123)
T PRK11448 419 EDAIQAVEKAIVEGQREILLA-MATGTGKTRTAIA 452 (1123)
T ss_pred HHHHHHHHHHHHhccCCeEEE-eCCCCCHHHHHHH
No 172
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=69.23 E-value=3.4 Score=45.89 Aligned_cols=31 Identities=19% Similarity=0.195 Sum_probs=21.2
Q ss_pred HHHHHHHhhc-----CCceEEEeecCCCCCcceeecc
Q psy7270 78 GEEMLEHAFE-----GYNVCIFAYGQTGAGKSYTMMG 109 (459)
Q Consensus 78 ~~plv~~~l~-----G~n~ti~aYGqTgSGKT~Tm~G 109 (459)
+..+++++.. |.+..++.. +||||||+||..
T Consensus 247 v~~~~~~~~~~~~~~~~~~gli~~-~TGsGKT~t~~~ 282 (667)
T TIGR00348 247 VKKIVESITRKTWGKDERGGLIWH-TQGSGKTLTMLF 282 (667)
T ss_pred HHHHHHHHHhcccCCCCceeEEEE-ecCCCccHHHHH
Confidence 3556666665 344555444 999999999954
No 173
>KOG0727|consensus
Probab=69.16 E-value=4.1 Score=39.39 Aligned_cols=66 Identities=20% Similarity=0.365 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHhhc---CCc--eEEEeecCCCCCcceee--------------ccCCCCCCCCChHHHHHHHHHHH
Q psy7270 70 QAMVYSDIGEEMLEHAFE---GYN--VCIFAYGQTGAGKSYTM--------------MGRQEVEGEEGIIPMICQDLFKR 130 (459)
Q Consensus 70 Q~~vy~~~~~plv~~~l~---G~n--~ti~aYGqTgSGKT~Tm--------------~G~~~~~~~~Giipr~~~~lF~~ 130 (459)
-++|-+.+--|+...=+- |++ -.|+.||+.|+|||--. .|+.-.....|==||.+.++|..
T Consensus 164 kqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvqkylgegprmvrdvfrl 243 (408)
T KOG0727|consen 164 KQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRL 243 (408)
T ss_pred HHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHhccCcHHHHHHHHH
Confidence 345555554565554331 443 35899999999998432 22110011245569999999988
Q ss_pred Hhhcc
Q psy7270 131 IKDTT 135 (459)
Q Consensus 131 i~~~~ 135 (459)
..+..
T Consensus 244 akena 248 (408)
T KOG0727|consen 244 AKENA 248 (408)
T ss_pred HhccC
Confidence 77654
No 174
>PRK04195 replication factor C large subunit; Provisional
Probab=69.06 E-value=4.3 Score=43.22 Aligned_cols=37 Identities=22% Similarity=0.416 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHhhcCC-ceEEEeecCCCCCcceee
Q psy7270 70 QAMVYSDIGEEMLEHAFEGY-NVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 70 Q~~vy~~~~~plv~~~l~G~-n~ti~aYGqTgSGKT~Tm 107 (459)
|.++-..+ ..++.....|. .-.++-||++|+|||++.
T Consensus 19 ~~~~~~~l-~~~l~~~~~g~~~~~lLL~GppG~GKTtla 56 (482)
T PRK04195 19 NEKAKEQL-REWIESWLKGKPKKALLLYGPPGVGKTSLA 56 (482)
T ss_pred CHHHHHHH-HHHHHHHhcCCCCCeEEEECCCCCCHHHHH
Confidence 34444332 45555555665 457888999999999876
No 175
>PRK04328 hypothetical protein; Provisional
Probab=68.51 E-value=3.8 Score=39.53 Aligned_cols=28 Identities=25% Similarity=0.388 Sum_probs=22.8
Q ss_pred HHHHHHHhhcC---CceEEEeecCCCCCcce
Q psy7270 78 GEEMLEHAFEG---YNVCIFAYGQTGAGKSY 105 (459)
Q Consensus 78 ~~plv~~~l~G---~n~ti~aYGqTgSGKT~ 105 (459)
+-+-+|.++.| ..++++-+|++|||||.
T Consensus 8 Gi~~LD~lL~GGip~gs~ili~G~pGsGKT~ 38 (249)
T PRK04328 8 GIPGMDEILYGGIPERNVVLLSGGPGTGKSI 38 (249)
T ss_pred CchhHHHHhcCCCcCCcEEEEEcCCCCCHHH
Confidence 34567888876 57889999999999974
No 176
>PRK11637 AmiB activator; Provisional
Probab=68.48 E-value=52 Score=34.40 Aligned_cols=17 Identities=6% Similarity=0.339 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy7270 350 LIRELKEEIQRLRDLLK 366 (459)
Q Consensus 350 ~i~~l~~ei~~L~~~l~ 366 (459)
.+.+++++|..++..+.
T Consensus 48 ~l~~l~~qi~~~~~~i~ 64 (428)
T PRK11637 48 QLKSIQQDIAAKEKSVR 64 (428)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444445544444443
No 177
>PRK11637 AmiB activator; Provisional
Probab=68.26 E-value=1e+02 Score=32.18 Aligned_cols=11 Identities=18% Similarity=0.416 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q psy7270 355 KEEIQRLRDLL 365 (459)
Q Consensus 355 ~~ei~~L~~~l 365 (459)
+.+|..++.++
T Consensus 102 ~~ei~~l~~eI 112 (428)
T PRK11637 102 NKQIDELNASI 112 (428)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 178
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=68.09 E-value=30 Score=38.61 Aligned_cols=25 Identities=40% Similarity=0.462 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7270 414 MQQRLRDLEEQYKREKNEADQAFEQ 438 (459)
Q Consensus 414 ~~~~~~~~~~~~~~~~~e~~~~~~~ 438 (459)
..++.++||.++++.+.|+..-.|+
T Consensus 543 ~r~r~~~lE~E~~~lr~elk~kee~ 567 (697)
T PF09726_consen 543 CRQRRRQLESELKKLRRELKQKEEQ 567 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666666666665555544
No 179
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=68.08 E-value=4.3 Score=44.65 Aligned_cols=27 Identities=26% Similarity=0.486 Sum_probs=21.7
Q ss_pred HHHHhhcCCceEEEeecCCCCCcceee
Q psy7270 81 MLEHAFEGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 81 lv~~~l~G~n~ti~aYGqTgSGKT~Tm 107 (459)
++..+..++...++-||++|+|||+..
T Consensus 166 l~~~ia~~~~~~vlL~Gp~GtGKTTLA 192 (615)
T TIGR02903 166 LLAKVASPFPQHIILYGPPGVGKTTAA 192 (615)
T ss_pred HHHHHhcCCCCeEEEECCCCCCHHHHH
Confidence 445556688888999999999999864
No 180
>KOG1029|consensus
Probab=67.67 E-value=72 Score=35.61 Aligned_cols=16 Identities=13% Similarity=0.434 Sum_probs=12.7
Q ss_pred HHHHHHHHHhhcCCce
Q psy7270 76 DIGEEMLEHAFEGYNV 91 (459)
Q Consensus 76 ~~~~plv~~~l~G~n~ 91 (459)
.++-.|+...|.|+..
T Consensus 72 SIAmkLi~lkLqG~~l 87 (1118)
T KOG1029|consen 72 SIAMKLIKLKLQGIQL 87 (1118)
T ss_pred HHHHHHHHHHhcCCcC
Confidence 5667789999999875
No 181
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=67.64 E-value=2.3 Score=40.45 Aligned_cols=20 Identities=30% Similarity=0.479 Sum_probs=16.7
Q ss_pred ceEEEeecCCCCCcceeecc
Q psy7270 90 NVCIFAYGQTGAGKSYTMMG 109 (459)
Q Consensus 90 n~ti~aYGqTgSGKT~Tm~G 109 (459)
...++-||++|+|||++.-+
T Consensus 12 ~~~~liyG~~G~GKtt~a~~ 31 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKY 31 (220)
T ss_pred CcEEEEECCCCCCHHHHHHh
Confidence 35689999999999998744
No 182
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=67.53 E-value=5.7 Score=38.62 Aligned_cols=30 Identities=27% Similarity=0.389 Sum_probs=20.2
Q ss_pred HHHHHHHHHhhcCCceEEEeecCCCCCcceee
Q psy7270 76 DIGEEMLEHAFEGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 76 ~~~~plv~~~l~G~n~ti~aYGqTgSGKT~Tm 107 (459)
.+.+.++..+..|.+. +-+|++|+|||...
T Consensus 9 ~l~~~~l~~l~~g~~v--LL~G~~GtGKT~lA 38 (262)
T TIGR02640 9 RVTSRALRYLKSGYPV--HLRGPAGTGKTTLA 38 (262)
T ss_pred HHHHHHHHHHhcCCeE--EEEcCCCCCHHHHH
Confidence 3334455556666655 56899999999754
No 183
>KOG0971|consensus
Probab=67.52 E-value=1.7e+02 Score=33.56 Aligned_cols=20 Identities=20% Similarity=0.449 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHhhhccC
Q psy7270 439 QRKSSLRRISKQMKLSIGRR 458 (459)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~ 458 (459)
..++.+..++++++..++.+
T Consensus 428 ~aEs~iadlkEQVDAAlGAE 447 (1243)
T KOG0971|consen 428 QAESTIADLKEQVDAALGAE 447 (1243)
T ss_pred HHHHHHHHHHHHHHHhhcHH
Confidence 45566666777766666544
No 184
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=67.45 E-value=49 Score=35.62 Aligned_cols=10 Identities=50% Similarity=0.793 Sum_probs=3.9
Q ss_pred HHHHHHHHHH
Q psy7270 356 EEIQRLRDLL 365 (459)
Q Consensus 356 ~ei~~L~~~l 365 (459)
+|+...+.++
T Consensus 58 eE~~~~R~El 67 (514)
T TIGR03319 58 EEVHKLRAEL 67 (514)
T ss_pred HHHHHHHHHH
Confidence 3333334333
No 185
>KOG3850|consensus
Probab=67.36 E-value=53 Score=33.51 Aligned_cols=8 Identities=13% Similarity=0.497 Sum_probs=3.7
Q ss_pred HHHHHHHH
Q psy7270 124 CQDLFKRI 131 (459)
Q Consensus 124 ~~~lF~~i 131 (459)
++..|+..
T Consensus 85 Ikq~FEkk 92 (455)
T KOG3850|consen 85 IKQVFEKK 92 (455)
T ss_pred HHHHHHHh
Confidence 34455443
No 186
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=67.27 E-value=7.4 Score=40.91 Aligned_cols=18 Identities=33% Similarity=0.451 Sum_probs=15.9
Q ss_pred ceEEEeecCCCCCcceee
Q psy7270 90 NVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 90 n~ti~aYGqTgSGKT~Tm 107 (459)
...|+-+|.+|+|||+|.
T Consensus 95 p~vI~lvG~~GsGKTTta 112 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTA 112 (437)
T ss_pred CeEEEEECCCCCcHHHHH
Confidence 467888999999999997
No 187
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=66.93 E-value=3.4 Score=40.57 Aligned_cols=26 Identities=19% Similarity=0.422 Sum_probs=18.7
Q ss_pred HHHHhhcCCceEEEeecCCCCCcceee
Q psy7270 81 MLEHAFEGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 81 lv~~~l~G~n~ti~aYGqTgSGKT~Tm 107 (459)
+++..+.. +--++-.|++|||||-++
T Consensus 25 ll~~l~~~-~~pvLl~G~~GtGKT~li 50 (272)
T PF12775_consen 25 LLDLLLSN-GRPVLLVGPSGTGKTSLI 50 (272)
T ss_dssp HHHHHHHC-TEEEEEESSTTSSHHHHH
T ss_pred HHHHHHHc-CCcEEEECCCCCchhHHH
Confidence 44444443 556788999999999776
No 188
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=66.84 E-value=2.6 Score=41.85 Aligned_cols=16 Identities=44% Similarity=0.642 Sum_probs=13.3
Q ss_pred EEEeecCCCCCcceee
Q psy7270 92 CIFAYGQTGAGKSYTM 107 (459)
Q Consensus 92 ti~aYGqTgSGKT~Tm 107 (459)
-...||+|||||++-+
T Consensus 89 I~~VYGPTG~GKSqLl 104 (369)
T PF02456_consen 89 IGVVYGPTGSGKSQLL 104 (369)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3566999999999865
No 189
>PRK12704 phosphodiesterase; Provisional
Probab=66.37 E-value=53 Score=35.43 Aligned_cols=10 Identities=50% Similarity=0.840 Sum_probs=4.0
Q ss_pred HHHHHHHHHH
Q psy7270 356 EEIQRLRDLL 365 (459)
Q Consensus 356 ~ei~~L~~~l 365 (459)
+|+...+.++
T Consensus 64 eE~~~~R~El 73 (520)
T PRK12704 64 EEIHKLRNEF 73 (520)
T ss_pred HHHHHHHHHH
Confidence 3344444333
No 190
>KOG0953|consensus
Probab=66.31 E-value=4.9 Score=42.90 Aligned_cols=43 Identities=19% Similarity=0.411 Sum_probs=30.6
Q ss_pred EEEeecCCCCCcceeec---cCCCCCCCCChHHHHHHHHHHHHhhc
Q psy7270 92 CIFAYGQTGAGKSYTMM---GRQEVEGEEGIIPMICQDLFKRIKDT 134 (459)
Q Consensus 92 ti~aYGqTgSGKT~Tm~---G~~~~~~~~Giipr~~~~lF~~i~~~ 134 (459)
-||..|+|.|||||--. +.....-..|-+-....++|++....
T Consensus 193 Ii~H~GPTNSGKTy~ALqrl~~aksGvycGPLrLLA~EV~~r~na~ 238 (700)
T KOG0953|consen 193 IIMHVGPTNSGKTYRALQRLKSAKSGVYCGPLRLLAHEVYDRLNAL 238 (700)
T ss_pred EEEEeCCCCCchhHHHHHHHhhhccceecchHHHHHHHHHHHhhhc
Confidence 48999999999999753 22222224566777888999987643
No 191
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=66.28 E-value=6.8 Score=43.75 Aligned_cols=39 Identities=26% Similarity=0.386 Sum_probs=29.5
Q ss_pred HHHHHHHHH-HHHHHHhhcCCceEEEeecCCCCCcceeecc
Q psy7270 70 QAMVYSDIG-EEMLEHAFEGYNVCIFAYGQTGAGKSYTMMG 109 (459)
Q Consensus 70 Q~~vy~~~~-~plv~~~l~G~n~ti~aYGqTgSGKT~Tm~G 109 (459)
...-|+..+ ..+++++-+|.+-.+++. .||||||+|-+-
T Consensus 165 ~~RyyQ~~AI~rv~Eaf~~g~~raLlvM-ATGTGKTrTAia 204 (875)
T COG4096 165 GPRYYQIIAIRRVIEAFSKGQNRALLVM-ATGTGKTRTAIA 204 (875)
T ss_pred cchHHHHHHHHHHHHHHhcCCceEEEEE-ecCCCcceeHHH
Confidence 344565554 788899999999965554 799999999643
No 192
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=66.26 E-value=4 Score=43.26 Aligned_cols=25 Identities=28% Similarity=0.454 Sum_probs=18.9
Q ss_pred HHHHhhcCCceEEEeecCCCCCcceee
Q psy7270 81 MLEHAFEGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 81 lv~~~l~G~n~ti~aYGqTgSGKT~Tm 107 (459)
.+..+++|.++ ++..+||||||.+.
T Consensus 19 ai~~~l~g~dv--lv~apTGsGKTl~y 43 (470)
T TIGR00614 19 VINAVLLGRDC--FVVMPTGGGKSLCY 43 (470)
T ss_pred HHHHHHcCCCE--EEEcCCCCcHhHHH
Confidence 45567789874 66679999999763
No 193
>PRK14974 cell division protein FtsY; Provisional
Probab=65.97 E-value=7.9 Score=39.25 Aligned_cols=18 Identities=39% Similarity=0.564 Sum_probs=16.0
Q ss_pred ceEEEeecCCCCCcceee
Q psy7270 90 NVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 90 n~ti~aYGqTgSGKT~Tm 107 (459)
...|+-.|++|+|||.|+
T Consensus 140 ~~vi~~~G~~GvGKTTti 157 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTI 157 (336)
T ss_pred CeEEEEEcCCCCCHHHHH
Confidence 467889999999999987
No 194
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=65.86 E-value=2.7 Score=31.51 Aligned_cols=15 Identities=33% Similarity=0.554 Sum_probs=12.3
Q ss_pred EEeecCCCCCcceee
Q psy7270 93 IFAYGQTGAGKSYTM 107 (459)
Q Consensus 93 i~aYGqTgSGKT~Tm 107 (459)
.+-+|++|||||.-|
T Consensus 26 tli~G~nGsGKSTll 40 (62)
T PF13555_consen 26 TLITGPNGSGKSTLL 40 (62)
T ss_pred EEEECCCCCCHHHHH
Confidence 466799999999655
No 195
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=65.61 E-value=2.9 Score=42.36 Aligned_cols=35 Identities=23% Similarity=0.443 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHH-hhc--CCc--eEEEeecCCCCCcce
Q psy7270 71 AMVYSDIGEEMLEH-AFE--GYN--VCIFAYGQTGAGKSY 105 (459)
Q Consensus 71 ~~vy~~~~~plv~~-~l~--G~n--~ti~aYGqTgSGKT~ 105 (459)
+++.+.+--|+.+- .|+ |+. -.|+-||+.|+|||-
T Consensus 161 ~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTL 200 (406)
T COG1222 161 QEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTL 200 (406)
T ss_pred HHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHH
Confidence 55666665666532 333 555 368999999999974
No 196
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=65.55 E-value=4.9 Score=39.76 Aligned_cols=35 Identities=17% Similarity=0.168 Sum_probs=23.8
Q ss_pred CCHHHHHHHHHHHHHHHhhcCCceEEEeecCCCCCcceeec
Q psy7270 68 ATQAMVYSDIGEEMLEHAFEGYNVCIFAYGQTGAGKSYTMM 108 (459)
Q Consensus 68 ~sQ~~vy~~~~~plv~~~l~G~n~ti~aYGqTgSGKT~Tm~ 108 (459)
-.|.++-+.+ .+.+-+|-+ ++.=.|||+|||.+.+
T Consensus 11 ~~Q~~~m~~v----~~~~~~~~~--~~~eapTGtGKTl~~L 45 (289)
T smart00489 11 PIQYEFMEEL----KRVLDRGKI--GILESPTGTGKTLSLL 45 (289)
T ss_pred HHHHHHHHHH----HHHHHcCCc--EEEECCCCcchhHHHH
Confidence 4677765544 445556755 4666799999998763
No 197
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=65.55 E-value=4.9 Score=39.76 Aligned_cols=35 Identities=17% Similarity=0.168 Sum_probs=23.8
Q ss_pred CCHHHHHHHHHHHHHHHhhcCCceEEEeecCCCCCcceeec
Q psy7270 68 ATQAMVYSDIGEEMLEHAFEGYNVCIFAYGQTGAGKSYTMM 108 (459)
Q Consensus 68 ~sQ~~vy~~~~~plv~~~l~G~n~ti~aYGqTgSGKT~Tm~ 108 (459)
-.|.++-+.+ .+.+-+|-+ ++.=.|||+|||.+.+
T Consensus 11 ~~Q~~~m~~v----~~~~~~~~~--~~~eapTGtGKTl~~L 45 (289)
T smart00488 11 PIQYEFMEEL----KRVLDRGKI--GILESPTGTGKTLSLL 45 (289)
T ss_pred HHHHHHHHHH----HHHHHcCCc--EEEECCCCcchhHHHH
Confidence 4677765544 445556755 4666799999998763
No 198
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=65.11 E-value=77 Score=32.88 Aligned_cols=18 Identities=33% Similarity=0.359 Sum_probs=9.6
Q ss_pred cCCccccccCHHHHHHHH
Q psy7270 161 EDLSKLAVTCYRDIHDLI 178 (459)
Q Consensus 161 ~~l~~~~v~s~~e~~~ll 178 (459)
.|++...+.-+.|+..++
T Consensus 114 sg~s~~v~skPrEfA~li 131 (395)
T PF10267_consen 114 SGLSGAVVSKPREFAHLI 131 (395)
T ss_pred cchhHHHHhCcHHHHhcc
Confidence 344444555556666655
No 199
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=64.93 E-value=3.7 Score=38.76 Aligned_cols=30 Identities=23% Similarity=0.428 Sum_probs=23.1
Q ss_pred HHHHHHHhhcC---CceEEEeecCCCCCcceee
Q psy7270 78 GEEMLEHAFEG---YNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 78 ~~plv~~~l~G---~n~ti~aYGqTgSGKT~Tm 107 (459)
+-+-+|.++.| ....+.-+|++|||||.-+
T Consensus 4 G~~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~ 36 (235)
T cd01123 4 GSKALDELLGGGIETGSITEIFGEFGSGKTQLC 36 (235)
T ss_pred CchhhHhhccCCCCCCeEEEEECCCCCCHHHHH
Confidence 34567888875 4567899999999999754
No 200
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=64.88 E-value=2.5 Score=36.70 Aligned_cols=15 Identities=40% Similarity=0.782 Sum_probs=12.9
Q ss_pred EEeecCCCCCcceee
Q psy7270 93 IFAYGQTGAGKSYTM 107 (459)
Q Consensus 93 i~aYGqTgSGKT~Tm 107 (459)
++-+|++|+|||+.+
T Consensus 2 ~~i~G~~G~GKT~l~ 16 (165)
T cd01120 2 ILVFGPTGSGKTTLA 16 (165)
T ss_pred eeEeCCCCCCHHHHH
Confidence 467999999999876
No 201
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=64.57 E-value=4.2 Score=42.75 Aligned_cols=31 Identities=29% Similarity=0.471 Sum_probs=21.0
Q ss_pred HhhcCCceEEEeecCCCCCcceeeccCCCCCCCCChHHH
Q psy7270 84 HAFEGYNVCIFAYGQTGAGKSYTMMGRQEVEGEEGIIPM 122 (459)
Q Consensus 84 ~~l~G~n~ti~aYGqTgSGKT~Tm~G~~~~~~~~Giipr 122 (459)
++.-|.| +|.||+.|||||...- .-+||+|-
T Consensus 194 AAAGgHn--Ll~~GpPGtGKTmla~------Rl~~lLPp 224 (490)
T COG0606 194 AAAGGHN--LLLVGPPGTGKTMLAS------RLPGLLPP 224 (490)
T ss_pred HHhcCCc--EEEecCCCCchHHhhh------hhcccCCC
Confidence 3334444 5889999999988752 23677763
No 202
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=64.48 E-value=2.7 Score=40.74 Aligned_cols=39 Identities=28% Similarity=0.361 Sum_probs=24.6
Q ss_pred CcceeeeeccCCCCCCHHHHHHHHHHHHHhhcccccceecccchHHH
Q psy7270 304 NSKTAMIAAISPADINYDETLSTLRYADRAKQIVCKAIVNEDANAKL 350 (459)
Q Consensus 304 ns~t~~I~~isp~~~~~~eTlsTL~fa~rak~I~n~~~~n~~~~~~~ 350 (459)
-++|++.+| .+.+|. ++.|.|.--+....++..+..+.+
T Consensus 185 l~kTivfVT-----HDidEA---~kLadri~vm~~G~i~Q~~~P~~i 223 (309)
T COG1125 185 LGKTIVFVT-----HDIDEA---LKLADRIAVMDAGEIVQYDTPDEI 223 (309)
T ss_pred hCCEEEEEe-----cCHHHH---HhhhceEEEecCCeEEEeCCHHHH
Confidence 357777765 355655 688888877766666665554443
No 203
>PF05729 NACHT: NACHT domain
Probab=64.44 E-value=3 Score=36.49 Aligned_cols=16 Identities=31% Similarity=0.654 Sum_probs=14.0
Q ss_pred EEEeecCCCCCcceee
Q psy7270 92 CIFAYGQTGAGKSYTM 107 (459)
Q Consensus 92 ti~aYGqTgSGKT~Tm 107 (459)
.++-+|..|+|||..|
T Consensus 2 ~l~I~G~~G~GKStll 17 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLL 17 (166)
T ss_pred EEEEECCCCCChHHHH
Confidence 4788999999999877
No 204
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=64.23 E-value=4.3 Score=44.86 Aligned_cols=18 Identities=28% Similarity=0.516 Sum_probs=15.3
Q ss_pred EEEeecCCCCCcceeecc
Q psy7270 92 CIFAYGQTGAGKSYTMMG 109 (459)
Q Consensus 92 ti~aYGqTgSGKT~Tm~G 109 (459)
.++-.|++|||||||+..
T Consensus 175 ~~lI~GpPGTGKT~t~~~ 192 (637)
T TIGR00376 175 LFLIHGPPGTGKTRTLVE 192 (637)
T ss_pred eEEEEcCCCCCHHHHHHH
Confidence 467899999999999854
No 205
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=64.19 E-value=4.2 Score=37.71 Aligned_cols=25 Identities=24% Similarity=0.420 Sum_probs=18.2
Q ss_pred HHhhcCC---ceEEEeecCCCCCcceee
Q psy7270 83 EHAFEGY---NVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 83 ~~~l~G~---n~ti~aYGqTgSGKT~Tm 107 (459)
|.++.|= ...+.-||++|||||.-.
T Consensus 2 D~~l~GGi~~g~i~~i~G~~GsGKT~l~ 29 (209)
T TIGR02237 2 DELLGGGVERGTITQIYGPPGSGKTNIC 29 (209)
T ss_pred hhhhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 3445443 567899999999998653
No 206
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f
Probab=64.08 E-value=7.2 Score=43.37 Aligned_cols=34 Identities=29% Similarity=0.457 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHhh-cCCceEEEeecCCCCCcceee
Q psy7270 73 VYSDIGEEMLEHAF-EGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 73 vy~~~~~plv~~~l-~G~n~ti~aYGqTgSGKT~Tm 107 (459)
||... ......++ .|.|-||+.-|.+|||||.|.
T Consensus 75 ifaiA-~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 109 (677)
T cd01383 75 VYAIA-DTAYNEMMRDEVNQSIIISGESGAGKTETA 109 (677)
T ss_pred HHHHH-HHHHHHHHHcCCCceEEEecCCCCCcchHH
Confidence 66433 33444444 599999999999999999875
No 207
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=64.07 E-value=17 Score=39.51 Aligned_cols=62 Identities=19% Similarity=0.239 Sum_probs=39.2
Q ss_pred CHHHHHHHHHHHHHHHhh--cCCceEEEeecCCCCCcc---------------eeecc----CCCCCCCCChH-HHHHHH
Q psy7270 69 TQAMVYSDIGEEMLEHAF--EGYNVCIFAYGQTGAGKS---------------YTMMG----RQEVEGEEGII-PMICQD 126 (459)
Q Consensus 69 sQ~~vy~~~~~plv~~~l--~G~n~ti~aYGqTgSGKT---------------~Tm~G----~~~~~~~~Gii-pr~~~~ 126 (459)
.++++=+.++..+..++. ..-...++-.||+|+||| |++-| ++-.....||+ |.-...
T Consensus 80 Glee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~kg~~~~sP~~e~PL~L~p~~~~~~ 159 (644)
T PRK15455 80 GMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMERVPIYVLKANGERSPVNESPLGLFDPDEDGP 159 (644)
T ss_pred CcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHHhCcceeecCCCCCCCCCCCCCCCCChhhhHH
Confidence 567787787766644443 334457888899999999 67766 33333446777 333444
Q ss_pred HHHH
Q psy7270 127 LFKR 130 (459)
Q Consensus 127 lF~~ 130 (459)
+|..
T Consensus 160 ~le~ 163 (644)
T PRK15455 160 ILEE 163 (644)
T ss_pred HHHH
Confidence 4443
No 208
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=64.04 E-value=2.9 Score=43.80 Aligned_cols=17 Identities=35% Similarity=0.501 Sum_probs=14.6
Q ss_pred eEEEeecCCCCCcceee
Q psy7270 91 VCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 91 ~ti~aYGqTgSGKT~Tm 107 (459)
..|+-.|+||+|||+|+
T Consensus 222 ~~i~~vGptGvGKTTt~ 238 (424)
T PRK05703 222 GVVALVGPTGVGKTTTL 238 (424)
T ss_pred cEEEEECCCCCCHHHHH
Confidence 36677799999999997
No 209
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=63.84 E-value=8.3 Score=33.28 Aligned_cols=15 Identities=33% Similarity=0.523 Sum_probs=12.0
Q ss_pred EEeecCCCCCcceee
Q psy7270 93 IFAYGQTGAGKSYTM 107 (459)
Q Consensus 93 i~aYGqTgSGKT~Tm 107 (459)
+--.|+||+||||+-
T Consensus 56 lSfHG~tGtGKn~v~ 70 (127)
T PF06309_consen 56 LSFHGWTGTGKNFVS 70 (127)
T ss_pred EEeecCCCCcHHHHH
Confidence 445699999999973
No 210
>PRK09039 hypothetical protein; Validated
Probab=63.62 E-value=57 Score=33.15 Aligned_cols=25 Identities=16% Similarity=0.234 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7270 414 MQQRLRDLEEQYKREKNEADQAFEQ 438 (459)
Q Consensus 414 ~~~~~~~~~~~~~~~~~e~~~~~~~ 438 (459)
+++++..|+.++.....+++.+.++
T Consensus 142 L~~qI~aLr~Qla~le~~L~~ae~~ 166 (343)
T PRK09039 142 LNQQIAALRRQLAALEAALDASEKR 166 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555544433
No 211
>PRK00106 hypothetical protein; Provisional
Probab=63.57 E-value=66 Score=34.75 Aligned_cols=10 Identities=30% Similarity=0.601 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q psy7270 356 EEIQRLRDLL 365 (459)
Q Consensus 356 ~ei~~L~~~l 365 (459)
+|+...+.++
T Consensus 79 eEi~~~R~El 88 (535)
T PRK00106 79 EEARKYREEI 88 (535)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 212
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=63.36 E-value=4.6 Score=44.57 Aligned_cols=25 Identities=28% Similarity=0.616 Sum_probs=19.4
Q ss_pred HHHHhhcCCceEEEeecCCCCCcceee
Q psy7270 81 MLEHAFEGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 81 lv~~~l~G~n~ti~aYGqTgSGKT~Tm 107 (459)
.+..++.|.+ |++.+|||||||.+.
T Consensus 36 ai~~ll~g~d--vl~~ApTGsGKT~af 60 (629)
T PRK11634 36 CIPHLLNGRD--VLGMAQTGSGKTAAF 60 (629)
T ss_pred HHHHHHcCCC--EEEEcCCCCcHHHHH
Confidence 4455678876 688889999999764
No 213
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins. Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr
Probab=63.29 E-value=7.5 Score=43.22 Aligned_cols=34 Identities=26% Similarity=0.483 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHhh-cCCceEEEeecCCCCCcceee
Q psy7270 73 VYSDIGEEMLEHAF-EGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 73 vy~~~~~plv~~~l-~G~n~ti~aYGqTgSGKT~Tm 107 (459)
||... ......++ .|.|-||+.-|.+|||||.|.
T Consensus 69 ifavA-~~Ay~~m~~~~~~QsIiisGESGaGKTes~ 103 (671)
T cd01381 69 IFAIS-DNAYTNMQREKKNQCIIISGESGAGKTEST 103 (671)
T ss_pred HHHHH-HHHHHHHHHcCCCceEEEEcCCCCCeehHH
Confidence 66433 33344433 599999999999999999875
No 214
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=63.16 E-value=3 Score=41.13 Aligned_cols=19 Identities=37% Similarity=0.775 Sum_probs=17.3
Q ss_pred cCCceEEEeecCCCCCcce
Q psy7270 87 EGYNVCIFAYGQTGAGKSY 105 (459)
Q Consensus 87 ~G~n~ti~aYGqTgSGKT~ 105 (459)
.|++-+||..|++|+|||.
T Consensus 1 kg~~fnImVvG~sG~GKTT 19 (281)
T PF00735_consen 1 KGFNFNIMVVGESGLGKTT 19 (281)
T ss_dssp HEEEEEEEEEECTTSSHHH
T ss_pred CCceEEEEEECCCCCCHHH
Confidence 4889999999999999986
No 215
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus
Probab=62.76 E-value=7.3 Score=43.34 Aligned_cols=34 Identities=18% Similarity=0.425 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHhh-cCCceEEEeecCCCCCcceee
Q psy7270 73 VYSDIGEEMLEHAF-EGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 73 vy~~~~~plv~~~l-~G~n~ti~aYGqTgSGKT~Tm 107 (459)
||... ......++ .|.|-||+.-|.+|||||.|.
T Consensus 70 ifavA-~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 104 (677)
T cd01387 70 LFAIA-NLAFAKMLDAKQNQCVIISGESGSGKTEAT 104 (677)
T ss_pred HHHHH-HHHHHHHHhcCCCceEEEEcCCCCCeehHH
Confidence 66443 33344444 699999999999999999875
No 216
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=62.68 E-value=7.2 Score=43.49 Aligned_cols=35 Identities=20% Similarity=0.425 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHhh-cCCceEEEeecCCCCCcceee
Q psy7270 72 MVYSDIGEEMLEHAF-EGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 72 ~vy~~~~~plv~~~l-~G~n~ti~aYGqTgSGKT~Tm 107 (459)
.||... ......++ .|.|-||+.-|.+|||||.|.
T Consensus 76 Hiy~iA-~~Ay~~m~~~~~~QsIiisGESGAGKTet~ 111 (692)
T cd01385 76 HIFAIA-DVAYYNMLRKKVNQCIVISGESGSGKTEST 111 (692)
T ss_pred CHHHHH-HHHHHHHHhcCCCceEEEecCCCCCchHHH
Confidence 366433 33334433 589999999999999999875
No 217
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=62.56 E-value=3.2 Score=42.93 Aligned_cols=18 Identities=28% Similarity=0.558 Sum_probs=15.0
Q ss_pred ceEEEeecCCCCCcceee
Q psy7270 90 NVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 90 n~ti~aYGqTgSGKT~Tm 107 (459)
...|+-||++|+|||+..
T Consensus 165 p~gvLL~GppGtGKT~lA 182 (389)
T PRK03992 165 PKGVLLYGPPGTGKTLLA 182 (389)
T ss_pred CCceEEECCCCCChHHHH
Confidence 346899999999999765
No 218
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=62.35 E-value=5.6 Score=39.76 Aligned_cols=27 Identities=26% Similarity=0.234 Sum_probs=21.0
Q ss_pred HHHhhcCCceEEEeecCCCCCcceeec
Q psy7270 82 LEHAFEGYNVCIFAYGQTGAGKSYTMM 108 (459)
Q Consensus 82 v~~~l~G~n~ti~aYGqTgSGKT~Tm~ 108 (459)
.+.--..-+.-++-||+.|||||.+|.
T Consensus 15 ~~~~~~~~~~r~vL~G~~GsGKS~~L~ 41 (309)
T PF10236_consen 15 KEADKSSKNNRYVLTGERGSGKSVLLA 41 (309)
T ss_pred HHhcccCCceEEEEECCCCCCHHHHHH
Confidence 333345677789999999999999983
No 219
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=62.23 E-value=3.6 Score=37.18 Aligned_cols=14 Identities=36% Similarity=0.759 Sum_probs=12.5
Q ss_pred EEeecCCCCCccee
Q psy7270 93 IFAYGQTGAGKSYT 106 (459)
Q Consensus 93 i~aYGqTgSGKT~T 106 (459)
|+.+|++|||||+.
T Consensus 2 i~i~G~pGsGKst~ 15 (183)
T TIGR01359 2 VFVLGGPGSGKGTQ 15 (183)
T ss_pred EEEECCCCCCHHHH
Confidence 78899999999875
No 220
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=62.21 E-value=3.6 Score=35.92 Aligned_cols=15 Identities=40% Similarity=0.554 Sum_probs=12.6
Q ss_pred EEeecCCCCCcceee
Q psy7270 93 IFAYGQTGAGKSYTM 107 (459)
Q Consensus 93 i~aYGqTgSGKT~Tm 107 (459)
|+-.|++|||||+.-
T Consensus 2 i~l~G~~GsGKST~a 16 (150)
T cd02021 2 IVVMGVSGSGKSTVG 16 (150)
T ss_pred EEEEcCCCCCHHHHH
Confidence 677899999998763
No 221
>PRK00131 aroK shikimate kinase; Reviewed
Probab=61.91 E-value=4 Score=36.28 Aligned_cols=17 Identities=41% Similarity=0.335 Sum_probs=14.4
Q ss_pred eEEEeecCCCCCcceee
Q psy7270 91 VCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 91 ~ti~aYGqTgSGKT~Tm 107 (459)
-.|+-+|.+|||||+.-
T Consensus 5 ~~i~l~G~~GsGKstla 21 (175)
T PRK00131 5 PNIVLIGFMGAGKSTIG 21 (175)
T ss_pred CeEEEEcCCCCCHHHHH
Confidence 36899999999998763
No 222
>PHA02624 large T antigen; Provisional
Probab=61.81 E-value=7.2 Score=42.46 Aligned_cols=28 Identities=18% Similarity=0.224 Sum_probs=22.4
Q ss_pred HHHHHhhcCCce--EEEeecCCCCCcceee
Q psy7270 80 EMLEHAFEGYNV--CIFAYGQTGAGKSYTM 107 (459)
Q Consensus 80 plv~~~l~G~n~--ti~aYGqTgSGKT~Tm 107 (459)
.++..++.|... ||+-||+.|||||+-.
T Consensus 419 ~~lk~~l~giPKk~~il~~GPpnTGKTtf~ 448 (647)
T PHA02624 419 DILKLIVENVPKRRYWLFKGPVNSGKTTLA 448 (647)
T ss_pred HHHHHHHhcCCCCeEEEEECCCCCCHHHHH
Confidence 446677788776 9999999999998643
No 223
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=61.70 E-value=5.1 Score=43.68 Aligned_cols=25 Identities=32% Similarity=0.476 Sum_probs=19.3
Q ss_pred HHHHhhcCCceEEEeecCCCCCcceee
Q psy7270 81 MLEHAFEGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 81 lv~~~l~G~n~ti~aYGqTgSGKT~Tm 107 (459)
.+..+++|.| |++.++||||||.+.
T Consensus 39 ~ip~~l~G~D--vi~~ApTGSGKTlaf 63 (572)
T PRK04537 39 TLPVALPGGD--VAGQAQTGTGKTLAF 63 (572)
T ss_pred HHHHHhCCCC--EEEEcCCCCcHHHHH
Confidence 3456789998 566789999999763
No 224
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=61.62 E-value=6.9 Score=40.01 Aligned_cols=35 Identities=17% Similarity=0.193 Sum_probs=23.0
Q ss_pred CHHHHHHHHHHHHHHHhhcC-CceEEEeecCCCCCcceee
Q psy7270 69 TQAMVYSDIGEEMLEHAFEG-YNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 69 sQ~~vy~~~~~plv~~~l~G-~n~ti~aYGqTgSGKT~Tm 107 (459)
.|+.+-+. +...+-.| ..-.++-||+.|+|||++.
T Consensus 20 Gq~~~~~~----l~~~~~~~~~~h~~L~~Gp~G~GKTtla 55 (363)
T PRK14961 20 GQKHIVTA----ISNGLSLGRIHHAWLLSGTRGVGKTTIA 55 (363)
T ss_pred ChHHHHHH----HHHHHHcCCCCeEEEEecCCCCCHHHHH
Confidence 55655543 33333344 4567899999999999864
No 225
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=61.59 E-value=6.5 Score=39.25 Aligned_cols=28 Identities=32% Similarity=0.424 Sum_probs=20.1
Q ss_pred HHHHHHhhcCCceEEEeecCCCCCcceee
Q psy7270 79 EEMLEHAFEGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 79 ~plv~~~l~G~n~ti~aYGqTgSGKT~Tm 107 (459)
.+++..++.+- ..|+-.|+||||||..|
T Consensus 134 ~~~l~~~v~~~-~~ili~G~tGsGKTTll 161 (308)
T TIGR02788 134 KEFLRLAIASR-KNIIISGGTGSGKTTFL 161 (308)
T ss_pred HHHHHHHhhCC-CEEEEECCCCCCHHHHH
Confidence 45566666544 45667799999999865
No 226
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=61.56 E-value=4.5 Score=41.63 Aligned_cols=16 Identities=19% Similarity=0.509 Sum_probs=14.0
Q ss_pred EEeecCCCCCcceeec
Q psy7270 93 IFAYGQTGAGKSYTMM 108 (459)
Q Consensus 93 i~aYGqTgSGKT~Tm~ 108 (459)
++..|+||||||+++.
T Consensus 2 ~lv~g~tGsGKt~~~v 17 (384)
T cd01126 2 VLVFAPTRSGKGVGFV 17 (384)
T ss_pred eeEecCCCCCCccEEE
Confidence 5789999999999874
No 227
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=61.44 E-value=1e+02 Score=28.43 Aligned_cols=12 Identities=17% Similarity=0.457 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHh
Q psy7270 258 TTLGKVISALAE 269 (459)
Q Consensus 258 ~~L~~vI~aL~~ 269 (459)
.+...|+.+|.+
T Consensus 30 ~~VKdvlq~LvD 41 (188)
T PF03962_consen 30 MSVKDVLQSLVD 41 (188)
T ss_pred hhHHHHHHHHhc
Confidence 445566666654
No 228
>KOG1803|consensus
Probab=61.34 E-value=3.4 Score=44.47 Aligned_cols=17 Identities=29% Similarity=0.489 Sum_probs=14.3
Q ss_pred eEEEeecCCCCCcceee
Q psy7270 91 VCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 91 ~ti~aYGqTgSGKT~Tm 107 (459)
-..+-.||+|+|||||+
T Consensus 202 ~l~~I~GPPGTGKT~Tl 218 (649)
T KOG1803|consen 202 DLLIIHGPPGTGKTRTL 218 (649)
T ss_pred CceEeeCCCCCCceeeH
Confidence 34567899999999997
No 229
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=61.12 E-value=9.9 Score=38.21 Aligned_cols=17 Identities=35% Similarity=0.624 Sum_probs=14.7
Q ss_pred eEEEeecCCCCCcceee
Q psy7270 91 VCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 91 ~ti~aYGqTgSGKT~Tm 107 (459)
..|.-.|++|+|||.|+
T Consensus 115 ~vi~lvGpnGsGKTTt~ 131 (318)
T PRK10416 115 FVILVVGVNGVGKTTTI 131 (318)
T ss_pred eEEEEECCCCCcHHHHH
Confidence 46777899999999997
No 230
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=61.11 E-value=6 Score=40.29 Aligned_cols=43 Identities=21% Similarity=0.248 Sum_probs=29.2
Q ss_pred eeecceeecCCCCCCCCCCCHHHHHHHHHHHHHHHhhcCCceEEEeecCCCCCcceee
Q psy7270 50 NFNFDYSYYSHDPSASNFATQAMVYSDIGEEMLEHAFEGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 50 ~f~FD~vf~~~d~~~~~~~sQ~~vy~~~~~plv~~~l~G~n~ti~aYGqTgSGKT~Tm 107 (459)
.|.|+.+- .|+++=.. ++..+.+-.-+.|+-+|.+|||||+.+
T Consensus 13 ~~pf~~iv-----------Gq~~~k~a----l~~~~~~p~~~~vli~G~~GtGKs~~a 55 (350)
T CHL00081 13 VFPFTAIV-----------GQEEMKLA----LILNVIDPKIGGVMIMGDRGTGKSTTI 55 (350)
T ss_pred CCCHHHHh-----------ChHHHHHH----HHHhccCCCCCeEEEEcCCCCCHHHHH
Confidence 56777664 56665443 444555533356889999999999986
No 231
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=61.11 E-value=8.4 Score=40.00 Aligned_cols=17 Identities=41% Similarity=0.552 Sum_probs=15.3
Q ss_pred eEEEeecCCCCCcceee
Q psy7270 91 VCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 91 ~ti~aYGqTgSGKT~Tm 107 (459)
..|+-.|++|+|||+|+
T Consensus 242 ~vI~LVGptGvGKTTTi 258 (436)
T PRK11889 242 QTIALIGPTGVGKTTTL 258 (436)
T ss_pred cEEEEECCCCCcHHHHH
Confidence 57888999999999997
No 232
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=60.96 E-value=3.5 Score=43.84 Aligned_cols=17 Identities=35% Similarity=0.411 Sum_probs=15.2
Q ss_pred eEEEeecCCCCCcceee
Q psy7270 91 VCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 91 ~ti~aYGqTgSGKT~Tm 107 (459)
..|.-.|+||+|||.|+
T Consensus 257 ~Vi~LvGpnGvGKTTTi 273 (484)
T PRK06995 257 GVFALMGPTGVGKTTTT 273 (484)
T ss_pred cEEEEECCCCccHHHHH
Confidence 46888899999999998
No 233
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=60.79 E-value=6.1 Score=43.78 Aligned_cols=41 Identities=24% Similarity=0.319 Sum_probs=28.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhhcCCceEEEeecCCCCCcceeecc
Q psy7270 64 ASNFATQAMVYSDIGEEMLEHAFEGYNVCIFAYGQTGAGKSYTMMG 109 (459)
Q Consensus 64 ~~~~~sQ~~vy~~~~~plv~~~l~G~n~ti~aYGqTgSGKT~Tm~G 109 (459)
|.|...|..-+.. +++.+-+|...- ..+|.|||||||||-.
T Consensus 8 ~~~~~~Q~~ai~~----l~~~~~~~~~~~-~l~Gvtgs~kt~~~a~ 48 (655)
T TIGR00631 8 FQPAGDQPKAIAK----LVEGLTDGEKHQ-TLLGVTGSGKTFTMAN 48 (655)
T ss_pred CCCChHHHHHHHH----HHHhhhcCCCcE-EEECCCCcHHHHHHHH
Confidence 3455788777754 455555664332 3789999999999865
No 234
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=60.65 E-value=3.8 Score=37.18 Aligned_cols=17 Identities=35% Similarity=0.518 Sum_probs=14.2
Q ss_pred eEEEeecCCCCCcceee
Q psy7270 91 VCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 91 ~ti~aYGqTgSGKT~Tm 107 (459)
+..+-||++|+|||..|
T Consensus 20 g~~vi~G~Ng~GKStil 36 (202)
T PF13476_consen 20 GLNVIYGPNGSGKSTIL 36 (202)
T ss_dssp EEEEEEESTTSSHHHHH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 45678899999999876
No 235
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=60.60 E-value=1.3e+02 Score=27.26 Aligned_cols=38 Identities=13% Similarity=0.145 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7270 410 LKQEMQQRLRDLEEQYKREKNEADQAFEQQRKSSLRRIS 448 (459)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~ 448 (459)
....+..+++++..++..+...++..+| ..|++.-+|-
T Consensus 121 e~~~~~~ki~e~~~ki~~ei~~lr~~iE-~~K~~~lr~~ 158 (177)
T PF07798_consen 121 EQAKQELKIQELNNKIDTEIANLRTEIE-SLKWDTLRWL 158 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 3344555566666555555555444444 3555555553
No 236
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=60.49 E-value=5.4 Score=37.86 Aligned_cols=29 Identities=34% Similarity=0.532 Sum_probs=22.1
Q ss_pred HHHHHHHhhc-CC--ceEEEeecCCCCCccee
Q psy7270 78 GEEMLEHAFE-GY--NVCIFAYGQTGAGKSYT 106 (459)
Q Consensus 78 ~~plv~~~l~-G~--n~ti~aYGqTgSGKT~T 106 (459)
+-|-++.++. |+ .++++.+|.+|||||+-
T Consensus 10 Gi~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l 41 (234)
T PRK06067 10 GNEELDRKLGGGIPFPSLILIEGDHGTGKSVL 41 (234)
T ss_pred CCHHHHHhhCCCCcCCcEEEEECCCCCChHHH
Confidence 4466788876 43 57788889999999864
No 237
>CHL00181 cbbX CbbX; Provisional
Probab=60.47 E-value=9.7 Score=37.64 Aligned_cols=15 Identities=27% Similarity=0.408 Sum_probs=13.2
Q ss_pred EEeecCCCCCcceee
Q psy7270 93 IFAYGQTGAGKSYTM 107 (459)
Q Consensus 93 i~aYGqTgSGKT~Tm 107 (459)
|+-||++|+|||+..
T Consensus 62 ill~G~pGtGKT~lA 76 (287)
T CHL00181 62 MSFTGSPGTGKTTVA 76 (287)
T ss_pred EEEECCCCCCHHHHH
Confidence 778999999999875
No 238
>PRK07261 topology modulation protein; Provisional
Probab=60.32 E-value=4.1 Score=36.88 Aligned_cols=15 Identities=40% Similarity=0.499 Sum_probs=12.5
Q ss_pred EEeecCCCCCcceee
Q psy7270 93 IFAYGQTGAGKSYTM 107 (459)
Q Consensus 93 i~aYGqTgSGKT~Tm 107 (459)
|+-.|++|||||+-.
T Consensus 3 i~i~G~~GsGKSTla 17 (171)
T PRK07261 3 IAIIGYSGSGKSTLA 17 (171)
T ss_pred EEEEcCCCCCHHHHH
Confidence 678899999998643
No 239
>PRK10884 SH3 domain-containing protein; Provisional
Probab=60.31 E-value=45 Score=31.30 Aligned_cols=22 Identities=14% Similarity=0.255 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHhhchhHHH
Q psy7270 353 ELKEEIQRLRDLLKQEGIEVQE 374 (459)
Q Consensus 353 ~l~~ei~~L~~~l~~~~~~~~~ 374 (459)
.++..+..|+.++++...++.+
T Consensus 90 ~~~~rlp~le~el~~l~~~l~~ 111 (206)
T PRK10884 90 SLRTRVPDLENQVKTLTDKLNN 111 (206)
T ss_pred cHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777888877665544444
No 240
>KOG0729|consensus
Probab=60.27 E-value=4.6 Score=39.32 Aligned_cols=21 Identities=29% Similarity=0.589 Sum_probs=16.4
Q ss_pred cCCc--eEEEeecCCCCCcceee
Q psy7270 87 EGYN--VCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 87 ~G~n--~ti~aYGqTgSGKT~Tm 107 (459)
-|+. -.|+.||+.|+|||..-
T Consensus 206 lgidppkgvllygppgtgktl~a 228 (435)
T KOG0729|consen 206 LGIDPPKGVLLYGPPGTGKTLCA 228 (435)
T ss_pred cCCCCCCceEEeCCCCCchhHHH
Confidence 3665 35899999999998653
No 241
>PHA02653 RNA helicase NPH-II; Provisional
Probab=60.25 E-value=7 Score=43.44 Aligned_cols=33 Identities=24% Similarity=0.255 Sum_probs=23.2
Q ss_pred CCHHHHHHHHHHHHHHHhhcCCceEEEeecCCCCCccee
Q psy7270 68 ATQAMVYSDIGEEMLEHAFEGYNVCIFAYGQTGAGKSYT 106 (459)
Q Consensus 68 ~sQ~~vy~~~~~plv~~~l~G~n~ti~aYGqTgSGKT~T 106 (459)
+-|.++=+. ++..+++|.+ |+..|+||||||..
T Consensus 163 ~~~~~iQ~q----il~~i~~gkd--vIv~A~TGSGKTtq 195 (675)
T PHA02653 163 SLQPDVQLK----IFEAWISRKP--VVLTGGTGVGKTSQ 195 (675)
T ss_pred chhHHHHHH----HHHHHHhCCC--EEEECCCCCCchhH
Confidence 455555543 4556667765 48899999999975
No 242
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=60.04 E-value=7.2 Score=39.77 Aligned_cols=26 Identities=31% Similarity=0.316 Sum_probs=21.1
Q ss_pred HHHhhcCCceEEEeecCCCCCcceee
Q psy7270 82 LEHAFEGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 82 v~~~l~G~n~ti~aYGqTgSGKT~Tm 107 (459)
++.+.+|-+..++..++||||||...
T Consensus 6 ~~~~~~~~~~~~~i~apTGsGKT~~~ 31 (357)
T TIGR03158 6 FEALQSKDADIIFNTAPTGAGKTLAW 31 (357)
T ss_pred HHHHHcCCCCEEEEECCCCCCHHHHH
Confidence 35557888878888999999999863
No 243
>cd01380 MYSc_type_V Myosin motor domain, type V myosins. Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act
Probab=59.87 E-value=8.7 Score=42.87 Aligned_cols=34 Identities=26% Similarity=0.451 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHhh-cCCceEEEeecCCCCCcceee
Q psy7270 73 VYSDIGEEMLEHAF-EGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 73 vy~~~~~plv~~~l-~G~n~ti~aYGqTgSGKT~Tm 107 (459)
||.-. .....+++ .|.|-||+.-|.+|||||.|.
T Consensus 69 ifaiA-~~Ay~~m~~~~~~QsIiiSGESGaGKTes~ 103 (691)
T cd01380 69 IFAIA-EEAYKQMTRDEKNQSIIVSGESGAGKTVSA 103 (691)
T ss_pred HHHHH-HHHHHHHHhcCCCceEEEEcCCCCCchHHH
Confidence 56333 33333333 699999999999999999874
No 244
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=59.87 E-value=9.1 Score=40.00 Aligned_cols=17 Identities=35% Similarity=0.686 Sum_probs=14.7
Q ss_pred eEEEeecCCCCCcceee
Q psy7270 91 VCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 91 ~ti~aYGqTgSGKT~Tm 107 (459)
..|+..|++|+|||+|+
T Consensus 224 ~vi~lvGptGvGKTTta 240 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSI 240 (432)
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45778899999999987
No 245
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=59.72 E-value=8.2 Score=43.04 Aligned_cols=38 Identities=18% Similarity=0.142 Sum_probs=25.2
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcCCceEEEeecCCCCCcceee
Q psy7270 66 NFATQAMVYSDIGEEMLEHAFEGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 66 ~~~sQ~~vy~~~~~plv~~~l~G~n~ti~aYGqTgSGKT~Tm 107 (459)
+...|..+...+. .+.-.+...-++..|+||||||.+.
T Consensus 262 lt~~Q~~ai~~I~----~d~~~~~~~~~Ll~~~TGSGKT~va 299 (681)
T PRK10917 262 LTGAQKRVVAEIL----ADLASPKPMNRLLQGDVGSGKTVVA 299 (681)
T ss_pred CCHHHHHHHHHHH----HhhhccCCceEEEECCCCCcHHHHH
Confidence 3355666554443 3334555567899999999999764
No 246
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=59.71 E-value=6.1 Score=40.14 Aligned_cols=28 Identities=21% Similarity=0.407 Sum_probs=21.8
Q ss_pred HHHHHHhhcCCceEEEeecCCCCCcceee
Q psy7270 79 EEMLEHAFEGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 79 ~plv~~~l~G~n~ti~aYGqTgSGKT~Tm 107 (459)
.+++..++.+. +.|+-.|.||||||.+|
T Consensus 168 ~~~L~~~v~~~-~~ili~G~tGsGKTTll 195 (340)
T TIGR03819 168 ARLLRAIVAAR-LAFLISGGTGSGKTTLL 195 (340)
T ss_pred HHHHHHHHhCC-CeEEEECCCCCCHHHHH
Confidence 45666666654 68889999999999876
No 247
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=59.49 E-value=4 Score=35.53 Aligned_cols=15 Identities=40% Similarity=0.530 Sum_probs=13.0
Q ss_pred EEEeecCCCCCccee
Q psy7270 92 CIFAYGQTGAGKSYT 106 (459)
Q Consensus 92 ti~aYGqTgSGKT~T 106 (459)
+|+.+|.+|||||+.
T Consensus 1 ~i~l~G~~GsGKstl 15 (154)
T cd00464 1 NIVLIGMMGAGKTTV 15 (154)
T ss_pred CEEEEcCCCCCHHHH
Confidence 478899999999875
No 248
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=59.38 E-value=1.5e+02 Score=27.59 Aligned_cols=18 Identities=39% Similarity=0.612 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy7270 349 KLIRELKEEIQRLRDLLK 366 (459)
Q Consensus 349 ~~i~~l~~ei~~L~~~l~ 366 (459)
.+|+.|+++|..++....
T Consensus 27 ~lIksLKeei~emkk~e~ 44 (201)
T PF13851_consen 27 ELIKSLKEEIAEMKKKEE 44 (201)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455556666555554443
No 249
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=59.36 E-value=3.6 Score=43.95 Aligned_cols=17 Identities=24% Similarity=0.434 Sum_probs=14.7
Q ss_pred eEEEeecCCCCCcceee
Q psy7270 91 VCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 91 ~ti~aYGqTgSGKT~Tm 107 (459)
-.|+-||++|+|||+..
T Consensus 89 ~giLL~GppGtGKT~la 105 (495)
T TIGR01241 89 KGVLLVGPPGTGKTLLA 105 (495)
T ss_pred CcEEEECCCCCCHHHHH
Confidence 35889999999999875
No 250
>KOG0652|consensus
Probab=59.32 E-value=4.6 Score=39.25 Aligned_cols=14 Identities=36% Similarity=0.838 Sum_probs=12.5
Q ss_pred EEEeecCCCCCcce
Q psy7270 92 CIFAYGQTGAGKSY 105 (459)
Q Consensus 92 ti~aYGqTgSGKT~ 105 (459)
.++.||+.|+|||.
T Consensus 207 GvLmYGPPGTGKTl 220 (424)
T KOG0652|consen 207 GVLMYGPPGTGKTL 220 (424)
T ss_pred ceEeeCCCCCcHHH
Confidence 58999999999974
No 251
>PF13173 AAA_14: AAA domain
Probab=58.88 E-value=4.2 Score=34.72 Aligned_cols=16 Identities=31% Similarity=0.513 Sum_probs=14.3
Q ss_pred EEEeecCCCCCcceee
Q psy7270 92 CIFAYGQTGAGKSYTM 107 (459)
Q Consensus 92 ti~aYGqTgSGKT~Tm 107 (459)
.++-+|+.|+|||+.|
T Consensus 4 ~~~l~G~R~vGKTtll 19 (128)
T PF13173_consen 4 IIILTGPRGVGKTTLL 19 (128)
T ss_pred eEEEECCCCCCHHHHH
Confidence 5788999999999987
No 252
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=58.88 E-value=11 Score=35.72 Aligned_cols=36 Identities=22% Similarity=0.139 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHhhc-CCceEEEeecCCCCCcceee
Q psy7270 72 MVYSDIGEEMLEHAFE-GYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 72 ~vy~~~~~plv~~~l~-G~n~ti~aYGqTgSGKT~Tm 107 (459)
.+|..++..+...+-. +..-.|.-.|++|||||+.+
T Consensus 14 ~~~~~l~~~~~~~~~~~~~~~iigi~G~~GsGKTTl~ 50 (229)
T PRK09270 14 AVHKPLLRRLAALQAEPQRRTIVGIAGPPGAGKSTLA 50 (229)
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHH
Confidence 3444444443333323 44456666799999999865
No 253
>PRK08118 topology modulation protein; Reviewed
Probab=58.83 E-value=4.5 Score=36.48 Aligned_cols=13 Identities=46% Similarity=0.682 Sum_probs=11.6
Q ss_pred EEeecCCCCCcce
Q psy7270 93 IFAYGQTGAGKSY 105 (459)
Q Consensus 93 i~aYGqTgSGKT~ 105 (459)
|+-.|++|||||+
T Consensus 4 I~I~G~~GsGKST 16 (167)
T PRK08118 4 IILIGSGGSGKST 16 (167)
T ss_pred EEEECCCCCCHHH
Confidence 7888999999985
No 254
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=58.79 E-value=9.5 Score=32.74 Aligned_cols=17 Identities=35% Similarity=0.471 Sum_probs=15.0
Q ss_pred eEEEeecCCCCCcceee
Q psy7270 91 VCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 91 ~ti~aYGqTgSGKT~Tm 107 (459)
..|+-+|.-|||||+-.
T Consensus 16 ~vi~L~GdLGaGKTtf~ 32 (123)
T PF02367_consen 16 DVILLSGDLGAGKTTFV 32 (123)
T ss_dssp EEEEEEESTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 56899999999999866
No 255
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=58.77 E-value=83 Score=28.28 Aligned_cols=28 Identities=32% Similarity=0.404 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhchhHHHHH
Q psy7270 349 KLIRELKEEIQRLRDLLKQEGIEVQEAS 376 (459)
Q Consensus 349 ~~i~~l~~ei~~L~~~l~~~~~~~~~~~ 376 (459)
..+..+..+|..|+.++.+...+.....
T Consensus 72 eel~~ld~ei~~L~~el~~l~~~~k~l~ 99 (169)
T PF07106_consen 72 EELAELDAEIKELREELAELKKEVKSLE 99 (169)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555566666666555444444333
No 256
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=58.69 E-value=5.9 Score=41.98 Aligned_cols=26 Identities=27% Similarity=0.455 Sum_probs=19.7
Q ss_pred HHHHHhhcCCceEEEeecCCCCCcceee
Q psy7270 80 EMLEHAFEGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 80 plv~~~l~G~n~ti~aYGqTgSGKT~Tm 107 (459)
..+..+++|.|.. ...+||||||.+.
T Consensus 116 ~ai~~~~~G~dvi--~~apTGSGKTlay 141 (475)
T PRK01297 116 QVLGYTLAGHDAI--GRAQTGTGKTAAF 141 (475)
T ss_pred HHHHHHhCCCCEE--EECCCCChHHHHH
Confidence 4566788998865 4569999999654
No 257
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=58.63 E-value=7.1 Score=41.97 Aligned_cols=24 Identities=25% Similarity=0.505 Sum_probs=18.5
Q ss_pred HHHHhhcCCceEEEeecCCCCCccee
Q psy7270 81 MLEHAFEGYNVCIFAYGQTGAGKSYT 106 (459)
Q Consensus 81 lv~~~l~G~n~ti~aYGqTgSGKT~T 106 (459)
.+..++.|.| +++..+||||||.+
T Consensus 151 aip~il~g~d--viv~ApTGSGKTla 174 (518)
T PLN00206 151 AIPAALSGRS--LLVSADTGSGKTAS 174 (518)
T ss_pred HHHHHhcCCC--EEEEecCCCCccHH
Confidence 3566778887 47777999999965
No 258
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=58.62 E-value=4 Score=40.27 Aligned_cols=16 Identities=25% Similarity=0.366 Sum_probs=13.9
Q ss_pred EEEeecCCCCCcceee
Q psy7270 92 CIFAYGQTGAGKSYTM 107 (459)
Q Consensus 92 ti~aYGqTgSGKT~Tm 107 (459)
-|+-+|++|||||+..
T Consensus 60 ~vll~G~pGTGKT~lA 75 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVA 75 (284)
T ss_pred eEEEEcCCCCCHHHHH
Confidence 5888999999999764
No 259
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=58.47 E-value=4.7 Score=39.62 Aligned_cols=21 Identities=33% Similarity=0.669 Sum_probs=18.4
Q ss_pred cCCceEEEeecCCCCCcceee
Q psy7270 87 EGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 87 ~G~n~ti~aYGqTgSGKT~Tm 107 (459)
.|++-+|+..|++|+|||..+
T Consensus 1 ~g~~f~I~vvG~sg~GKSTli 21 (276)
T cd01850 1 KGFQFNIMVVGESGLGKSTFI 21 (276)
T ss_pred CCcEEEEEEEcCCCCCHHHHH
Confidence 489999999999999998654
No 260
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=58.37 E-value=86 Score=28.59 Aligned_cols=12 Identities=33% Similarity=0.711 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHH
Q psy7270 353 ELKEEIQRLRDL 364 (459)
Q Consensus 353 ~l~~ei~~L~~~ 364 (459)
++.+|+..+...
T Consensus 92 ~l~~el~~l~~~ 103 (191)
T PF04156_consen 92 QLQEELDQLQER 103 (191)
T ss_pred HHHHHHHHHHHH
Confidence 333444444333
No 261
>PRK05580 primosome assembly protein PriA; Validated
Probab=58.16 E-value=6.6 Score=43.75 Aligned_cols=35 Identities=29% Similarity=0.364 Sum_probs=22.2
Q ss_pred CCCHHHHHHHHHHHHHHHhhcCCceEEEeecCCCCCcceeec
Q psy7270 67 FATQAMVYSDIGEEMLEHAFEGYNVCIFAYGQTGAGKSYTMM 108 (459)
Q Consensus 67 ~~sQ~~vy~~~~~plv~~~l~G~n~ti~aYGqTgSGKT~Tm~ 108 (459)
...|.++++.+.. .. ++ ..++.+|+||||||.+.+
T Consensus 146 t~~Q~~ai~~i~~----~~--~~-~~~Ll~~~TGSGKT~v~l 180 (679)
T PRK05580 146 NPEQAAAVEAIRA----AA--GF-SPFLLDGVTGSGKTEVYL 180 (679)
T ss_pred CHHHHHHHHHHHh----cc--CC-CcEEEECCCCChHHHHHH
Confidence 3456655544432 21 23 448999999999997653
No 262
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=58.01 E-value=7.6 Score=36.51 Aligned_cols=30 Identities=30% Similarity=0.596 Sum_probs=22.7
Q ss_pred HHHHHHHhhc-CC--ceEEEeecCCCCCcceee
Q psy7270 78 GEEMLEHAFE-GY--NVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 78 ~~plv~~~l~-G~--n~ti~aYGqTgSGKT~Tm 107 (459)
+-|-++.++. |+ ...++-||++|||||...
T Consensus 8 Gi~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~ 40 (225)
T PRK09361 8 GCKMLDELLGGGFERGTITQIYGPPGSGKTNIC 40 (225)
T ss_pred CcHHHHHHhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 3456788886 43 457899999999998764
No 263
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=57.95 E-value=3.9 Score=36.26 Aligned_cols=14 Identities=36% Similarity=0.539 Sum_probs=11.0
Q ss_pred EEeecCCCCCccee
Q psy7270 93 IFAYGQTGAGKSYT 106 (459)
Q Consensus 93 i~aYGqTgSGKT~T 106 (459)
|+-.|++|||||+.
T Consensus 1 i~l~G~~GsGKSTl 14 (163)
T TIGR01313 1 FVLMGVAGSGKSTI 14 (163)
T ss_pred CEEECCCCCCHHHH
Confidence 35679999999854
No 264
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=57.91 E-value=4.3 Score=38.42 Aligned_cols=23 Identities=26% Similarity=0.593 Sum_probs=15.9
Q ss_pred hhcCCceE------EEeecCCCCCcceee
Q psy7270 85 AFEGYNVC------IFAYGQTGAGKSYTM 107 (459)
Q Consensus 85 ~l~G~n~t------i~aYGqTgSGKT~Tm 107 (459)
+|+|+|-+ +.-.|++|||||.-+
T Consensus 17 VLkgi~l~v~~Gevv~iiGpSGSGKSTlL 45 (240)
T COG1126 17 VLKGISLSVEKGEVVVIIGPSGSGKSTLL 45 (240)
T ss_pred EecCcceeEcCCCEEEEECCCCCCHHHHH
Confidence 45555543 455799999999754
No 265
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=57.44 E-value=4.9 Score=36.56 Aligned_cols=15 Identities=33% Similarity=0.592 Sum_probs=12.7
Q ss_pred EEeecCCCCCcceee
Q psy7270 93 IFAYGQTGAGKSYTM 107 (459)
Q Consensus 93 i~aYGqTgSGKT~Tm 107 (459)
|+.+|++|||||+..
T Consensus 2 I~i~G~pGsGKst~a 16 (194)
T cd01428 2 ILLLGPPGSGKGTQA 16 (194)
T ss_pred EEEECCCCCCHHHHH
Confidence 788999999998643
No 266
>PRK06696 uridine kinase; Validated
Probab=57.06 E-value=12 Score=35.34 Aligned_cols=36 Identities=17% Similarity=0.163 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHhhcCCceEEEeecCCCCCcceee
Q psy7270 71 AMVYSDIGEEMLEHAFEGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 71 ~~vy~~~~~plv~~~l~G~n~ti~aYGqTgSGKT~Tm 107 (459)
.++.+.++..++. .-.+....|.-.|.+|||||+..
T Consensus 4 ~~~~~~la~~~~~-~~~~~~~iI~I~G~sgsGKSTlA 39 (223)
T PRK06696 4 KQLIKELAEHILT-LNLTRPLRVAIDGITASGKTTFA 39 (223)
T ss_pred HHHHHHHHHHHHH-hCCCCceEEEEECCCCCCHHHHH
Confidence 3444444433332 12455667888899999998754
No 267
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=57.05 E-value=4.6 Score=41.65 Aligned_cols=18 Identities=44% Similarity=0.575 Sum_probs=15.3
Q ss_pred eEEEeecCCCCCcceeec
Q psy7270 91 VCIFAYGQTGAGKSYTMM 108 (459)
Q Consensus 91 ~ti~aYGqTgSGKT~Tm~ 108 (459)
-.|+-.|++|+|||+|+.
T Consensus 207 ~ii~lvGptGvGKTTt~a 224 (407)
T PRK12726 207 RIISLIGQTGVGKTTTLV 224 (407)
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 457788999999999983
No 268
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=57.04 E-value=4.9 Score=33.63 Aligned_cols=17 Identities=29% Similarity=0.495 Sum_probs=13.8
Q ss_pred eEEEeecCCCCCcceee
Q psy7270 91 VCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 91 ~ti~aYGqTgSGKT~Tm 107 (459)
-.+.-.|++|||||.++
T Consensus 16 e~v~I~GpSGsGKSTLl 32 (107)
T cd00820 16 VGVLITGDSGIGKTELA 32 (107)
T ss_pred EEEEEEcCCCCCHHHHH
Confidence 34677899999999876
No 269
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=57.03 E-value=9.1 Score=40.58 Aligned_cols=28 Identities=32% Similarity=0.534 Sum_probs=20.9
Q ss_pred HHHhhcCCce------EEEeecCCCCCcceeecc
Q psy7270 82 LEHAFEGYNV------CIFAYGQTGAGKSYTMMG 109 (459)
Q Consensus 82 v~~~l~G~n~------ti~aYGqTgSGKT~Tm~G 109 (459)
+..+++|.+. .|+-.|++|||||+.|-+
T Consensus 18 l~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr~ 51 (504)
T TIGR03238 18 LERILVKFNKELPSSSLLFLCGSSGDGKSEILAE 51 (504)
T ss_pred HHHHHhCCceeecCCCEEEEECCCCCCHHHHHhc
Confidence 3456677554 477899999999998864
No 270
>KOG3859|consensus
Probab=57.03 E-value=6.1 Score=38.70 Aligned_cols=25 Identities=36% Similarity=0.573 Sum_probs=21.4
Q ss_pred HHhhcCCceEEEeecCCCCCcceee
Q psy7270 83 EHAFEGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 83 ~~~l~G~n~ti~aYGqTgSGKT~Tm 107 (459)
.++-+||.-.|+|.|.||.|||.-|
T Consensus 35 ksv~~GF~FNilCvGETg~GKsTLm 59 (406)
T KOG3859|consen 35 KSVSQGFCFNILCVGETGLGKSTLM 59 (406)
T ss_pred HHHhcCceEEEEEeccCCccHHHHH
Confidence 4556899999999999999998744
No 271
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=56.75 E-value=4.3 Score=42.30 Aligned_cols=17 Identities=29% Similarity=0.520 Sum_probs=14.5
Q ss_pred eEEEeecCCCCCcceee
Q psy7270 91 VCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 91 ~ti~aYGqTgSGKT~Tm 107 (459)
--++.+|+||||||..|
T Consensus 43 ~h~~i~g~tGsGKt~~i 59 (410)
T cd01127 43 AHTMIIGTTGTGKTTQI 59 (410)
T ss_pred ccEEEEcCCCCCHHHHH
Confidence 45789999999999876
No 272
>PRK10865 protein disaggregation chaperone; Provisional
Probab=56.72 E-value=9.5 Score=43.70 Aligned_cols=38 Identities=18% Similarity=0.270 Sum_probs=24.6
Q ss_pred CHHHHHHHHHHHHHHHhhcCCc------eEEEeecCCCCCcceee
Q psy7270 69 TQAMVYSDIGEEMLEHAFEGYN------VCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 69 sQ~~vy~~~~~plv~~~l~G~n------~ti~aYGqTgSGKT~Tm 107 (459)
.|...-..+.. .|..+..|.+ +.++-+|+||+|||++.
T Consensus 572 GQ~~ai~~l~~-~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA 615 (857)
T PRK10865 572 GQNEAVEAVSN-AIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELC 615 (857)
T ss_pred CCHHHHHHHHH-HHHHHHhcccCCCCCCceEEEECCCCCCHHHHH
Confidence 45565555533 3334444433 57888899999999975
No 273
>CHL00195 ycf46 Ycf46; Provisional
Probab=56.65 E-value=4.8 Score=42.97 Aligned_cols=17 Identities=35% Similarity=0.475 Sum_probs=14.9
Q ss_pred eEEEeecCCCCCcceee
Q psy7270 91 VCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 91 ~ti~aYGqTgSGKT~Tm 107 (459)
-.|+-||++|+|||++.
T Consensus 260 kGILL~GPpGTGKTllA 276 (489)
T CHL00195 260 RGLLLVGIQGTGKSLTA 276 (489)
T ss_pred ceEEEECCCCCcHHHHH
Confidence 56999999999999765
No 274
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=56.45 E-value=5.8 Score=41.37 Aligned_cols=84 Identities=15% Similarity=0.152 Sum_probs=42.8
Q ss_pred hcCCceEEEeecCCCCCcceeeccCCCC-CCCCChHHHHHHHHHHHHhhccCCcceecccCCcceEeeeCCCCceecCCc
Q psy7270 86 FEGYNVCIFAYGQTGAGKSYTMMGRQEV-EGEEGIIPMICQDLFKRIKDTTNDKLKSRWKNSNLRVREHPLLGPYVEDLS 164 (459)
Q Consensus 86 l~G~n~ti~aYGqTgSGKT~Tm~G~~~~-~~~~Giipr~~~~lF~~i~~~~~~~~~~~~~~~~l~i~e~~~~g~~v~~l~ 164 (459)
=.++|. +-.|++|+||||.-.+-... .-..| -...+..||..+....-.. .... .-+.+..+.
T Consensus 207 e~~~Nl--i~lGp~GTGKThla~~l~~~~a~~sG-~f~T~a~Lf~~L~~~~lg~----v~~~---------DlLI~DEvg 270 (449)
T TIGR02688 207 EPNYNL--IELGPKGTGKSYIYNNLSPYVILISG-GTITVAKLFYNISTRQIGL----VGRW---------DVVAFDEVA 270 (449)
T ss_pred hcCCcE--EEECCCCCCHHHHHHHHhHHHHHHcC-CcCcHHHHHHHHHHHHHhh----hccC---------CEEEEEcCC
Confidence 356665 56799999999876542110 01123 2234566666665411000 0011 112334444
Q ss_pred cccccCHHHHHHHHHHHhhcc
Q psy7270 165 KLAVTCYRDIHDLIDEGNKAR 185 (459)
Q Consensus 165 ~~~v~s~~e~~~ll~~g~~~R 185 (459)
-++....+|+...|.....+-
T Consensus 271 ylp~~~~~~~v~imK~yMesg 291 (449)
T TIGR02688 271 TLKFAKPKELIGILKNYMESG 291 (449)
T ss_pred CCcCCchHHHHHHHHHHHHhC
Confidence 455566677777776655543
No 275
>PRK09039 hypothetical protein; Validated
Probab=56.35 E-value=1.6e+02 Score=29.94 Aligned_cols=54 Identities=20% Similarity=0.271 Sum_probs=29.2
Q ss_pred HHHHHHHHHHchHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7270 397 FAQVELLEKQGVDLKQEM---QQRLRDLEEQYKREKNEADQAFEQQRKSSLRRISKQM 451 (459)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~ 451 (459)
..|++.|++|+..+..++ +++..+...++.....+++.++.+ ...+|+++..+.
T Consensus 143 ~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~-~~~~l~~~~~~~ 199 (343)
T PRK09039 143 NQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALAQ-RVQELNRYRSEF 199 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhHHHH
Confidence 345566666655544433 344455555555555555544433 456777777666
No 276
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=56.31 E-value=4.8 Score=36.30 Aligned_cols=16 Identities=38% Similarity=0.696 Sum_probs=13.9
Q ss_pred EEEeecCCCCCcceee
Q psy7270 92 CIFAYGQTGAGKSYTM 107 (459)
Q Consensus 92 ti~aYGqTgSGKT~Tm 107 (459)
.|+-.|++|||||..+
T Consensus 3 ~~~i~G~sGsGKttl~ 18 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLL 18 (179)
T ss_pred EEEEECCCCCCHHHHH
Confidence 5778899999999876
No 277
>KOG0335|consensus
Probab=56.28 E-value=4 Score=42.92 Aligned_cols=22 Identities=32% Similarity=0.525 Sum_probs=17.4
Q ss_pred cCCceEEEeecCCCCCcceeeccC
Q psy7270 87 EGYNVCIFAYGQTGAGKSYTMMGR 110 (459)
Q Consensus 87 ~G~n~ti~aYGqTgSGKT~Tm~G~ 110 (459)
+|.+ ++|++|||||||+...++
T Consensus 110 ~Grd--l~acAqTGsGKT~aFLiP 131 (482)
T KOG0335|consen 110 GGRD--LMACAQTGSGKTAAFLIP 131 (482)
T ss_pred cCCc--eEEEccCCCcchHHHHHH
Confidence 4444 599999999999987664
No 278
>KOG0739|consensus
Probab=56.23 E-value=5.3 Score=39.63 Aligned_cols=65 Identities=20% Similarity=0.346 Sum_probs=39.1
Q ss_pred HHHHHHHHHHH-HHHhhcCCc---eEEEeecCCCCCcceee-----------ccCCCCC---CCCChHHHHHHHHHHHHh
Q psy7270 71 AMVYSDIGEEM-LEHAFEGYN---VCIFAYGQTGAGKSYTM-----------MGRQEVE---GEEGIIPMICQDLFKRIK 132 (459)
Q Consensus 71 ~~vy~~~~~pl-v~~~l~G~n---~ti~aYGqTgSGKT~Tm-----------~G~~~~~---~~~Giipr~~~~lF~~i~ 132 (459)
+.+=+.+.-|+ ...+|.|.- ..|+-||+.|+||+|-- |--..++ .=-|=-...+..||....
T Consensus 143 eALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWmGESEkLVknLFemAR 222 (439)
T KOG0739|consen 143 EALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKNLFEMAR 222 (439)
T ss_pred HHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHHhccHHHHHHHHHHHHH
Confidence 34444444554 456777765 67999999999999943 2211100 001334567889998776
Q ss_pred hcc
Q psy7270 133 DTT 135 (459)
Q Consensus 133 ~~~ 135 (459)
+..
T Consensus 223 e~k 225 (439)
T KOG0739|consen 223 ENK 225 (439)
T ss_pred hcC
Confidence 554
No 279
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=56.19 E-value=6.8 Score=43.15 Aligned_cols=39 Identities=23% Similarity=0.319 Sum_probs=23.9
Q ss_pred CCHHHHHHHHHHHHHHHhhcCC--ceEEEeecCCCCCcceee
Q psy7270 68 ATQAMVYSDIGEEMLEHAFEGY--NVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 68 ~sQ~~vy~~~~~plv~~~l~G~--n~ti~aYGqTgSGKT~Tm 107 (459)
+-|......+ ..++..+.-+. +-.++-||++|+|||.++
T Consensus 87 ~~~~~ki~~l-~~~l~~~~~~~~~~~illL~GP~GsGKTTl~ 127 (637)
T TIGR00602 87 AVHKKKIEEV-ETWLKAQVLENAPKRILLITGPSGCGKSTTI 127 (637)
T ss_pred cCcHHHHHHH-HHHHHhcccccCCCcEEEEECCCCCCHHHHH
Confidence 4555555443 33444443332 124788999999999986
No 280
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=56.14 E-value=8.1 Score=36.98 Aligned_cols=41 Identities=22% Similarity=0.267 Sum_probs=24.4
Q ss_pred EeecCCCCCcceeec------cCCC--CCCCCChHHHHHHHHHHHHhhc
Q psy7270 94 FAYGQTGAGKSYTMM------GRQE--VEGEEGIIPMICQDLFKRIKDT 134 (459)
Q Consensus 94 ~aYGqTgSGKT~Tm~------G~~~--~~~~~Giipr~~~~lF~~i~~~ 134 (459)
..+|++|||||.|+- |..- -...+++=...+..||.-+...
T Consensus 36 ~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~~~~l~ril~G~~~~ 84 (231)
T PF12774_consen 36 ALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMDYQSLSRILKGLAQS 84 (231)
T ss_dssp EEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-HHHHHHHHHHHHHH
T ss_pred CCcCCCCCCchhHHHHHHHHhCCeEEEecccccccHHHHHHHHHHHhhc
Confidence 469999999999973 3210 0123455566666676665543
No 281
>KOG0354|consensus
Probab=55.93 E-value=8.9 Score=42.57 Aligned_cols=24 Identities=38% Similarity=0.649 Sum_probs=19.7
Q ss_pred HHHHHhhcCCceEEEeecCCCCCccee
Q psy7270 80 EMLEHAFEGYNVCIFAYGQTGAGKSYT 106 (459)
Q Consensus 80 plv~~~l~G~n~ti~aYGqTgSGKT~T 106 (459)
.++.-+| |.|+.|.+ |||+|||+.
T Consensus 69 eivq~AL-gkNtii~l--PTG~GKTfI 92 (746)
T KOG0354|consen 69 ELVQPAL-GKNTIIAL--PTGSGKTFI 92 (746)
T ss_pred HHhHHhh-cCCeEEEe--ecCCCccch
Confidence 4678888 99986655 999999985
No 282
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=55.77 E-value=9.6 Score=40.52 Aligned_cols=35 Identities=17% Similarity=0.134 Sum_probs=22.4
Q ss_pred CHHHHHHHHHHHHHHHhhcCCc-eEEEeecCCCCCcceee
Q psy7270 69 TQAMVYSDIGEEMLEHAFEGYN-VCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 69 sQ~~vy~~~~~plv~~~l~G~n-~ti~aYGqTgSGKT~Tm 107 (459)
.|+.+- ..+-..+-.|.- ..++-||+.|+|||++.
T Consensus 18 Gq~~i~----~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA 53 (472)
T PRK14962 18 GQDHVK----KLIINALKKNSISHAYIFAGPRGTGKTTVA 53 (472)
T ss_pred CcHHHH----HHHHHHHHcCCCCeEEEEECCCCCCHHHHH
Confidence 566652 233333344433 45889999999999875
No 283
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=55.59 E-value=4.8 Score=43.16 Aligned_cols=16 Identities=31% Similarity=0.694 Sum_probs=13.7
Q ss_pred EEEeecCCCCCcceee
Q psy7270 92 CIFAYGQTGAGKSYTM 107 (459)
Q Consensus 92 ti~aYGqTgSGKT~Tm 107 (459)
.|+-||++|+|||+..
T Consensus 218 GILLyGPPGTGKT~LA 233 (512)
T TIGR03689 218 GVLLYGPPGCGKTLIA 233 (512)
T ss_pred ceEEECCCCCcHHHHH
Confidence 4888999999998754
No 284
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=55.58 E-value=7.8 Score=42.36 Aligned_cols=26 Identities=35% Similarity=0.622 Sum_probs=19.4
Q ss_pred HHHHHhhcCCceEEEeecCCCCCcceee
Q psy7270 80 EMLEHAFEGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 80 plv~~~l~G~n~ti~aYGqTgSGKT~Tm 107 (459)
.++..+++|.|+ ++..+||+|||.+.
T Consensus 20 ~~i~~il~g~dv--lv~~PTG~GKTl~y 45 (591)
T TIGR01389 20 EIISHVLDGRDV--LVVMPTGGGKSLCY 45 (591)
T ss_pred HHHHHHHcCCCE--EEEcCCCccHhHHH
Confidence 345566789885 55569999999863
No 285
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=55.54 E-value=5.1 Score=41.86 Aligned_cols=18 Identities=33% Similarity=0.355 Sum_probs=15.8
Q ss_pred ceEEEeecCCCCCcceee
Q psy7270 90 NVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 90 n~ti~aYGqTgSGKT~Tm 107 (459)
+..|...|++|+|||.|+
T Consensus 191 g~vi~lvGpnG~GKTTtl 208 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTT 208 (420)
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 356888999999999998
No 286
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=55.50 E-value=1.3e+02 Score=32.31 Aligned_cols=23 Identities=22% Similarity=0.408 Sum_probs=15.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhc
Q psy7270 347 NAKLIRELKEEIQRLRDLLKQEG 369 (459)
Q Consensus 347 ~~~~i~~l~~ei~~L~~~l~~~~ 369 (459)
....+.+|+++|..|+.+++...
T Consensus 69 ~~~~~~~l~~~l~~l~~~~~~~~ 91 (525)
T TIGR02231 69 DPERLAELRKQIRELEAELRDLE 91 (525)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHH
Confidence 34466777777777777776544
No 287
>PF05055 DUF677: Protein of unknown function (DUF677); InterPro: IPR007749 This entry contains proteins belonging to the UPF0496 family, found in plants. This family includes AT14A like proteins from Arabidopsis thaliana. At14a contains a small domain that has sequence similarities to integrins from fungi, insects and humans. Transcripts of At14a are found in all Arabidopsis tissues and the protein localises partly to the plasma membrane [].
Probab=55.38 E-value=1.6e+02 Score=29.92 Aligned_cols=65 Identities=15% Similarity=0.203 Sum_probs=36.6
Q ss_pred HhHHHHHHHHHHHHhhhhhhhhhhhcCCCCCccCCCCcchhhhhhccCCCcceeeeeccCCCCCCHHHHHHHHHHHHHhh
Q psy7270 255 KSLTTLGKVISALAEISAVQHVAKKKKKADFIPYRDSVLTWLLRENLGGNSKTAMIAAISPADINYDETLSTLRYADRAK 334 (459)
Q Consensus 255 ~SL~~L~~vI~aL~~~~~~~~~~~~~~~~~~ipyRdSkLT~lL~dsLgGns~t~~I~~isp~~~~~~eTlsTL~fa~rak 334 (459)
.|+..+..|...|-+.....-..-- ....--+.+..|++|+-++| +.|+.|++|+...-
T Consensus 28 ~s~~s~~~~t~~Lle~~Qevv~~il--e~~~di~~~~~L~~Lv~~YF-------------------d~S~~a~~~C~~L~ 86 (336)
T PF05055_consen 28 LSFDSLKEVTECLLEMNQEVVKVIL--ECKKDIWKNPELFRLVSDYF-------------------DSSLEASDFCEALL 86 (336)
T ss_pred CChHHHHHHHHHHhCCChHHHHHHH--HHHHHhhcChhHHHHHHHHH-------------------HhhHHHHHHHHHHH
Confidence 3466666666666653210000000 00001256889999998776 77788888887766
Q ss_pred cccccc
Q psy7270 335 QIVCKA 340 (459)
Q Consensus 335 ~I~n~~ 340 (459)
+-..+.
T Consensus 87 k~I~~a 92 (336)
T PF05055_consen 87 KCIHRA 92 (336)
T ss_pred HHHHHH
Confidence 554333
No 288
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=55.27 E-value=1.6e+02 Score=26.85 Aligned_cols=15 Identities=40% Similarity=0.714 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHh
Q psy7270 353 ELKEEIQRLRDLLKQ 367 (459)
Q Consensus 353 ~l~~ei~~L~~~l~~ 367 (459)
+.+..+..+.+++.+
T Consensus 85 ~~~~~l~~l~~el~~ 99 (191)
T PF04156_consen 85 ELQQQLQQLQEELDQ 99 (191)
T ss_pred hHHHHHHHHHHHHHH
Confidence 344444444444433
No 289
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=55.04 E-value=11 Score=42.37 Aligned_cols=38 Identities=21% Similarity=0.245 Sum_probs=25.4
Q ss_pred CHHHHHHHHHHHHHHHhhcCC------ceEEEeecCCCCCcceee
Q psy7270 69 TQAMVYSDIGEEMLEHAFEGY------NVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 69 sQ~~vy~~~~~plv~~~l~G~------n~ti~aYGqTgSGKT~Tm 107 (459)
.|++.-+.+.. .|.....|. .++++-+|+||+|||+..
T Consensus 462 GQ~~ai~~l~~-~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lA 505 (758)
T PRK11034 462 GQDKAIEALTE-AIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVT 505 (758)
T ss_pred CcHHHHHHHHH-HHHHHhccccCCCCCcceEEEECCCCCCHHHHH
Confidence 45565555533 344444454 367999999999999875
No 290
>PF15294 Leu_zip: Leucine zipper
Probab=55.04 E-value=93 Score=30.59 Aligned_cols=90 Identities=21% Similarity=0.302 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhchh---HHHHHHHHHhhhhcCCC------CCCCcchhHHHHHHHHHHchHHHHHHHHHHH
Q psy7270 349 KLIRELKEEIQRLRDLLKQEGIE---VQEASELIMSKMAETPN------AGENVDWDFAQVELLEKQGVDLKQEMQQRLR 419 (459)
Q Consensus 349 ~~i~~l~~ei~~L~~~l~~~~~~---~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (459)
..|.+|++|.+.|+..|...... ..+....+...+.+... ........-.++..|+.+...++.++++.+.
T Consensus 132 kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~~~~~~k~~~~~~~q~l~dLE~k~a~lK~e~ek~~~ 211 (278)
T PF15294_consen 132 KEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQDEQGDQKGKKDLSFKAQDLSDLENKMAALKSELEKALQ 211 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccchhhHHHHHHHHHHHHHHHHH
Confidence 46788899999998877543211 11111112222211111 0011112334556677777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy7270 420 DLEEQYKREKNEADQAFEQ 438 (459)
Q Consensus 420 ~~~~~~~~~~~e~~~~~~~ 438 (459)
+.+....-.+..+..+..+
T Consensus 212 d~~~~~k~L~e~L~~~Khe 230 (278)
T PF15294_consen 212 DKESQQKALEETLQSCKHE 230 (278)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7777666666666665544
No 291
>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the
Probab=55.00 E-value=11 Score=42.66 Aligned_cols=34 Identities=24% Similarity=0.382 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHhh-cCCceEEEeecCCCCCcceee
Q psy7270 73 VYSDIGEEMLEHAF-EGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 73 vy~~~~~plv~~~l-~G~n~ti~aYGqTgSGKT~Tm 107 (459)
||... .....+++ .|.|-||+.-|.+|||||.|.
T Consensus 69 ifaiA-~~Ay~~m~~~~~~QsIiiSGESGAGKTe~t 103 (767)
T cd01386 69 IYSLA-QTAYRALLETRRDQSIIFLGRSGAGKTTSC 103 (767)
T ss_pred HHHHH-HHHHHHHHHcCCCceEEEecCCCCCcHHHH
Confidence 56433 33333433 699999999999999999874
No 292
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=54.97 E-value=7.7 Score=39.43 Aligned_cols=24 Identities=33% Similarity=0.714 Sum_probs=21.3
Q ss_pred cCCceEEEeecCCCCCcce---eeccC
Q psy7270 87 EGYNVCIFAYGQTGAGKSY---TMMGR 110 (459)
Q Consensus 87 ~G~n~ti~aYGqTgSGKT~---Tm~G~ 110 (459)
.|+.-+|+..|+.|+|||. ||+|.
T Consensus 20 ~Gi~f~im~~G~sG~GKttfiNtL~~~ 46 (373)
T COG5019 20 KGIDFTIMVVGESGLGKTTFINTLFGT 46 (373)
T ss_pred cCCceEEEEecCCCCchhHHHHhhhHh
Confidence 5999999999999999996 66665
No 293
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=54.93 E-value=9.3 Score=35.66 Aligned_cols=29 Identities=24% Similarity=0.406 Sum_probs=21.9
Q ss_pred HHHHHHhhc-CCc--eEEEeecCCCCCcceee
Q psy7270 79 EEMLEHAFE-GYN--VCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 79 ~plv~~~l~-G~n--~ti~aYGqTgSGKT~Tm 107 (459)
-+-+|.++. |+. ..+..+|++|||||...
T Consensus 5 i~~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~ 36 (218)
T cd01394 5 CKGLDELLGGGVERGTVTQVYGPPGTGKTNIA 36 (218)
T ss_pred hhHHHHHhcCCccCCeEEEEECCCCCCHHHHH
Confidence 355788886 554 45889999999999764
No 294
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=54.89 E-value=2.3e+02 Score=28.29 Aligned_cols=52 Identities=31% Similarity=0.477 Sum_probs=28.1
Q ss_pred HHHHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7270 400 VELLEKQGVDLKQEMQQRLRDLEEQYKREKNEADQAFEQQRKSSLRRISKQMK 452 (459)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 452 (459)
+..|.+++..+..+....-..+ +++.+++-++....++..+.-..++-++|.
T Consensus 137 V~kL~k~i~~Le~e~~~~q~~l-e~Lr~EKVdlEn~LE~EQE~lvN~L~Kqm~ 188 (310)
T PF09755_consen 137 VNKLQKKIERLEKEKSAKQEEL-ERLRREKVDLENTLEQEQEALVNRLWKQMD 188 (310)
T ss_pred HHHHHHHHHHHHHHHHHhHHHH-HHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555444444332222222 356667777777777766666666666554
No 295
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=54.88 E-value=12 Score=39.10 Aligned_cols=18 Identities=33% Similarity=0.519 Sum_probs=15.1
Q ss_pred ceEEEeecCCCCCcceee
Q psy7270 90 NVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 90 n~ti~aYGqTgSGKT~Tm 107 (459)
...|+-+|+||+|||+..
T Consensus 108 ~~~iLl~Gp~GtGKT~lA 125 (412)
T PRK05342 108 KSNILLIGPTGSGKTLLA 125 (412)
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 367999999999999754
No 296
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=54.87 E-value=4.7 Score=40.42 Aligned_cols=17 Identities=29% Similarity=0.446 Sum_probs=14.7
Q ss_pred eEEEeecCCCCCcceee
Q psy7270 91 VCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 91 ~ti~aYGqTgSGKT~Tm 107 (459)
.+|+-.|.||||||+.|
T Consensus 144 ~siii~G~t~sGKTt~l 160 (312)
T COG0630 144 KSIIICGGTASGKTTLL 160 (312)
T ss_pred CcEEEECCCCCCHHHHH
Confidence 35688899999999988
No 297
>PRK14531 adenylate kinase; Provisional
Probab=54.87 E-value=5.8 Score=36.17 Aligned_cols=15 Identities=33% Similarity=0.536 Sum_probs=13.0
Q ss_pred EEEeecCCCCCccee
Q psy7270 92 CIFAYGQTGAGKSYT 106 (459)
Q Consensus 92 ti~aYGqTgSGKT~T 106 (459)
-|+.+|++|||||+.
T Consensus 4 ~i~i~G~pGsGKsT~ 18 (183)
T PRK14531 4 RLLFLGPPGAGKGTQ 18 (183)
T ss_pred EEEEECCCCCCHHHH
Confidence 478899999999875
No 298
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=54.85 E-value=5.7 Score=35.82 Aligned_cols=15 Identities=27% Similarity=0.394 Sum_probs=12.6
Q ss_pred EEeecCCCCCcceee
Q psy7270 93 IFAYGQTGAGKSYTM 107 (459)
Q Consensus 93 i~aYGqTgSGKT~Tm 107 (459)
++-+|++|||||...
T Consensus 2 ~li~G~~G~GKT~l~ 16 (187)
T cd01124 2 TLLSGGPGTGKTTFA 16 (187)
T ss_pred EEEEcCCCCCHHHHH
Confidence 678999999998743
No 299
>PF12004 DUF3498: Domain of unknown function (DUF3498); InterPro: IPR021887 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 433 to 538 amino acids in length. This domain is found associated with PF00616 from PFAM, PF00168 from PFAM. This domain has two conserved sequence motifs: DLQ and PLSFQNP. ; PDB: 3BXJ_B.
Probab=54.81 E-value=4 Score=43.25 Aligned_cols=21 Identities=24% Similarity=0.385 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhhch
Q psy7270 350 LIRELKEEIQRLRDLLKQEGI 370 (459)
Q Consensus 350 ~i~~l~~ei~~L~~~l~~~~~ 370 (459)
..++|++||..||+.|.....
T Consensus 370 ~~e~YEqEI~~LkErL~~S~r 390 (495)
T PF12004_consen 370 EVEKYEQEIQSLKERLRMSHR 390 (495)
T ss_dssp ---------------------
T ss_pred hhhhHHHHHHHHHHHHHHHHH
Confidence 345688889999888765443
No 300
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=54.72 E-value=5.5 Score=44.62 Aligned_cols=17 Identities=35% Similarity=0.429 Sum_probs=15.2
Q ss_pred eEEEeecCCCCCcceee
Q psy7270 91 VCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 91 ~ti~aYGqTgSGKT~Tm 107 (459)
..|.-.|+||+|||+|+
T Consensus 186 ~Vi~lVGpnGvGKTTTi 202 (767)
T PRK14723 186 GVLALVGPTGVGKTTTT 202 (767)
T ss_pred eEEEEECCCCCcHHHHH
Confidence 57788999999999997
No 301
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=54.65 E-value=6.2 Score=38.73 Aligned_cols=17 Identities=35% Similarity=0.532 Sum_probs=14.1
Q ss_pred eEEEeecCCCCCcceee
Q psy7270 91 VCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 91 ~ti~aYGqTgSGKT~Tm 107 (459)
.+|...|++|+|||.|.
T Consensus 73 ~vi~l~G~~G~GKTTt~ 89 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTI 89 (272)
T ss_pred eEEEEECCCCCcHHHHH
Confidence 45666699999999987
No 302
>KOG4807|consensus
Probab=54.44 E-value=1.3e+02 Score=30.89 Aligned_cols=18 Identities=33% Similarity=0.389 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHhh
Q psy7270 351 IRELKEEIQRLRDLLKQE 368 (459)
Q Consensus 351 i~~l~~ei~~L~~~l~~~ 368 (459)
..-|+++|+.|+.+|..-
T Consensus 293 ~~~L~k~vQ~L~AQle~~ 310 (593)
T KOG4807|consen 293 HEALEKEVQALRAQLEAW 310 (593)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 455777777777777543
No 303
>cd01379 MYSc_type_III Myosin motor domain, type III myosins. Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the
Probab=54.40 E-value=11 Score=41.65 Aligned_cols=35 Identities=17% Similarity=0.404 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHhh-cCCceEEEeecCCCCCcceee
Q psy7270 72 MVYSDIGEEMLEHAF-EGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 72 ~vy~~~~~plv~~~l-~G~n~ti~aYGqTgSGKT~Tm 107 (459)
.||... ......++ .+.|-||+.-|.+|||||.|+
T Consensus 68 HifavA-~~Ay~~m~~~~~~QsIiisGESGsGKTet~ 103 (653)
T cd01379 68 HIFAIA-DAAYQSLVTYNQDQCIVISGESGSGKTESA 103 (653)
T ss_pred cHHHHH-HHHHHHHHhcCCCceEEEecCCCCCchHHH
Confidence 366432 33333433 589999999999999999986
No 304
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=54.37 E-value=1.4e+02 Score=26.25 Aligned_cols=41 Identities=20% Similarity=0.363 Sum_probs=19.1
Q ss_pred CCCCCCCcchhHHHHHHHHHHchHHHHHHHHHHHHHHHHHH
Q psy7270 386 TPNAGENVDWDFAQVELLEKQGVDLKQEMQQRLRDLEEQYK 426 (459)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (459)
.|.....-+.....+..|++++....+++.+.+++.++.+.
T Consensus 92 LPg~~~see~Q~~~i~~L~~E~~~~~~el~~~v~e~e~ll~ 132 (144)
T PF11221_consen 92 LPGIEVSEEEQLKRIKELEEENEEAEEELQEAVKEAEELLK 132 (144)
T ss_dssp STTSSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444333334445555555555555555555544444443
No 305
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=54.36 E-value=11 Score=41.63 Aligned_cols=38 Identities=18% Similarity=0.163 Sum_probs=24.0
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcCCceEEEeecCCCCCcceee
Q psy7270 66 NFATQAMVYSDIGEEMLEHAFEGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 66 ~~~sQ~~vy~~~~~plv~~~l~G~n~ti~aYGqTgSGKT~Tm 107 (459)
+...|..+...+. .+.-......++..|+||||||...
T Consensus 236 lt~~Q~~ai~~I~----~~~~~~~~~~~Ll~g~TGSGKT~va 273 (630)
T TIGR00643 236 LTRAQKRVVKEIL----QDLKSDVPMNRLLQGDVGSGKTLVA 273 (630)
T ss_pred CCHHHHHHHHHHH----HHhccCCCccEEEECCCCCcHHHHH
Confidence 3345666654443 3333344456799999999999864
No 306
>PRK10867 signal recognition particle protein; Provisional
Probab=54.33 E-value=15 Score=38.68 Aligned_cols=18 Identities=39% Similarity=0.521 Sum_probs=15.5
Q ss_pred ceEEEeecCCCCCcceee
Q psy7270 90 NVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 90 n~ti~aYGqTgSGKT~Tm 107 (459)
...|+..|++|||||.|.
T Consensus 100 p~vI~~vG~~GsGKTTta 117 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTA 117 (433)
T ss_pred CEEEEEECCCCCcHHHHH
Confidence 357888899999999986
No 307
>KOG3990|consensus
Probab=54.21 E-value=71 Score=30.72 Aligned_cols=25 Identities=48% Similarity=0.636 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHhhchhHHH
Q psy7270 350 LIRELKEEIQRLRDLLKQEGIEVQE 374 (459)
Q Consensus 350 ~i~~l~~ei~~L~~~l~~~~~~~~~ 374 (459)
.|..|++||++|+..|.+....+.+
T Consensus 226 ~i~~lkeeia~Lkk~L~qkdq~ile 250 (305)
T KOG3990|consen 226 KIQKLKEEIARLKKLLHQKDQLILE 250 (305)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHh
Confidence 5678999999999999876544433
No 308
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=54.12 E-value=32 Score=35.02 Aligned_cols=58 Identities=22% Similarity=0.336 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHhhcCCce---EEEeecCCCCCcc---------------eeeccCCCCCCCCChHHHHHHHHHH
Q psy7270 71 AMVYSDIGEEMLEHAFEGYNV---CIFAYGQTGAGKS---------------YTMMGRQEVEGEEGIIPMICQDLFK 129 (459)
Q Consensus 71 ~~vy~~~~~plv~~~l~G~n~---ti~aYGqTgSGKT---------------~Tm~G~~~~~~~~Giipr~~~~lF~ 129 (459)
++.-+.++. .+.++-.|+.. .++-.||+|+||| ||+.|++-....-+|+|.-+...|.
T Consensus 67 ~~~i~~lV~-~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~y~~Y~l~~~Pm~e~PL~L~P~~~r~~~~ 142 (358)
T PF08298_consen 67 EETIERLVN-YFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGLEEYPIYTLKGCPMHEEPLHLFPKELRREFE 142 (358)
T ss_pred HHHHHHHHH-HHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHhheEEEEEecCCccccChhhhCCHhHHHHHH
Confidence 444445544 55666666653 6888999999998 7888887666667999988887764
No 309
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=54.12 E-value=11 Score=36.01 Aligned_cols=27 Identities=22% Similarity=0.384 Sum_probs=20.5
Q ss_pred HHHHHHhhc-CC--ceEEEeecCCCCCcce
Q psy7270 79 EEMLEHAFE-GY--NVCIFAYGQTGAGKSY 105 (459)
Q Consensus 79 ~plv~~~l~-G~--n~ti~aYGqTgSGKT~ 105 (459)
-+-++.++. |+ ..+++-+|++|||||.
T Consensus 7 i~~LD~~l~GG~~~gs~~lI~G~pGsGKT~ 36 (237)
T TIGR03877 7 IPGMDEILHGGIPERNVVLLSGGPGTGKSI 36 (237)
T ss_pred cHhHHHHhcCCCcCCeEEEEEcCCCCCHHH
Confidence 345677665 54 4788999999999985
No 310
>TIGR03744 traC_PFL_4706 conjugative transfer ATPase, PFL_4706 family. Members of this protein family are predicted ATP-binding proteins apparently associated with DNA conjugal transfer. Members are found both in plasmids and in bacterial chromosomal regions that appear to derive from integrative elements such as conjugative transposons. More distant homologs, outside the scope of this family, include type IV secretion/conjugal transfer proteins such as TraC, VirB4 and TrsE. The granularity of this protein family definition is chosen so as to represent one distinctive clade and act as a marker through which to define and recognize the class of mobile element it serves.
Probab=53.89 E-value=5 Score=46.21 Aligned_cols=20 Identities=45% Similarity=0.607 Sum_probs=17.3
Q ss_pred CCceEEEeecCCCCCcceee
Q psy7270 88 GYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 88 G~n~ti~aYGqTgSGKT~Tm 107 (459)
.-|+-.+..|+||||||++|
T Consensus 473 ~~n~n~~I~G~TGSGKS~l~ 492 (893)
T TIGR03744 473 KKNAHLLILGPTGAGKSATL 492 (893)
T ss_pred CCcccEEEECCCCCCHHHHH
Confidence 34777889999999999987
No 311
>TIGR02746 TraC-F-type type-IV secretion system protein TraC. The protein family described here is common among the F, P and I-like type IV secretion systems. Gene symbols include TraC (F-type), TrbE/VirB4 (P-type) and TraU (I-type). The protein conyains the Walker A and B motifs and so is a putative nucleotide triphosphatase.
Probab=53.72 E-value=5 Score=45.48 Aligned_cols=18 Identities=50% Similarity=0.683 Sum_probs=15.2
Q ss_pred ceEEEeecCCCCCcceee
Q psy7270 90 NVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 90 n~ti~aYGqTgSGKT~Tm 107 (459)
|..++..|.||||||++|
T Consensus 430 n~n~~I~G~tGsGKS~~~ 447 (797)
T TIGR02746 430 NYNIAVVGGSGAGKSFFM 447 (797)
T ss_pred ccceEEEcCCCCCHHHHH
Confidence 445678899999999998
No 312
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=53.66 E-value=9.7 Score=41.84 Aligned_cols=24 Identities=25% Similarity=0.437 Sum_probs=17.8
Q ss_pred HHHHhhcCCceEEEeecCCCCCccee
Q psy7270 81 MLEHAFEGYNVCIFAYGQTGAGKSYT 106 (459)
Q Consensus 81 lv~~~l~G~n~ti~aYGqTgSGKT~T 106 (459)
++..++.|.|+. +.++||||||.+
T Consensus 33 ai~~il~g~dvl--v~apTGsGKTl~ 56 (607)
T PRK11057 33 IIDAVLSGRDCL--VVMPTGGGKSLC 56 (607)
T ss_pred HHHHHHcCCCEE--EEcCCCchHHHH
Confidence 345567898875 457999999974
No 313
>PRK06217 hypothetical protein; Validated
Probab=53.38 E-value=6.2 Score=35.94 Aligned_cols=14 Identities=29% Similarity=0.520 Sum_probs=12.2
Q ss_pred EEeecCCCCCccee
Q psy7270 93 IFAYGQTGAGKSYT 106 (459)
Q Consensus 93 i~aYGqTgSGKT~T 106 (459)
|+-.|.+|||||+-
T Consensus 4 I~i~G~~GsGKSTl 17 (183)
T PRK06217 4 IHITGASGSGTTTL 17 (183)
T ss_pred EEEECCCCCCHHHH
Confidence 78889999999864
No 314
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=53.22 E-value=6.5 Score=33.80 Aligned_cols=14 Identities=43% Similarity=0.546 Sum_probs=12.0
Q ss_pred EEeecCCCCCccee
Q psy7270 93 IFAYGQTGAGKSYT 106 (459)
Q Consensus 93 i~aYGqTgSGKT~T 106 (459)
|+-.|++|||||..
T Consensus 2 I~i~G~~GsGKst~ 15 (147)
T cd02020 2 IAIDGPAGSGKSTV 15 (147)
T ss_pred EEEECCCCCCHHHH
Confidence 67789999999874
No 315
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=53.12 E-value=1.9e+02 Score=27.75 Aligned_cols=30 Identities=27% Similarity=0.396 Sum_probs=18.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhchhHHHHH
Q psy7270 347 NAKLIRELKEEIQRLRDLLKQEGIEVQEAS 376 (459)
Q Consensus 347 ~~~~i~~l~~ei~~L~~~l~~~~~~~~~~~ 376 (459)
....+..+++.|.+|...|........+..
T Consensus 32 ee~r~~~i~e~i~~Le~~l~~E~k~R~E~~ 61 (247)
T PF06705_consen 32 EEQRFQDIKEQIQKLEKALEAEVKRRVESN 61 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566777778888777765544443333
No 316
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=52.79 E-value=13 Score=37.46 Aligned_cols=35 Identities=17% Similarity=0.219 Sum_probs=23.2
Q ss_pred CHHHHHHHHHHHHHHHhhcC-CceEEEeecCCCCCcceee
Q psy7270 69 TQAMVYSDIGEEMLEHAFEG-YNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 69 sQ~~vy~~~~~plv~~~l~G-~n~ti~aYGqTgSGKT~Tm 107 (459)
.|+.+.+.. ...+-.| ....++-||+.|+|||.+.
T Consensus 18 g~~~~~~~l----~~~~~~~~~~~~~Ll~G~~G~GKt~~a 53 (355)
T TIGR02397 18 GQEHIVQTL----KNAIKNGRIAHAYLFSGPRGTGKTSIA 53 (355)
T ss_pred CcHHHHHHH----HHHHHcCCCCeEEEEECCCCCCHHHHH
Confidence 456665443 3333345 3457899999999999765
No 317
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=52.73 E-value=11 Score=40.54 Aligned_cols=36 Identities=22% Similarity=0.206 Sum_probs=22.3
Q ss_pred CHHHHHHHHHHHHHHHhhcCCceEEEeecCCCCCcceee
Q psy7270 69 TQAMVYSDIGEEMLEHAFEGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 69 sQ~~vy~~~~~plv~~~l~G~n~ti~aYGqTgSGKT~Tm 107 (459)
.|+.+...+ ...+.. ......++-||+.|+|||.+.
T Consensus 18 Gq~~v~~~L-~~~i~~--~~l~ha~Lf~GppGtGKTTlA 53 (504)
T PRK14963 18 GQEHVKEVL-LAALRQ--GRLGHAYLFSGPRGVGKTTTA 53 (504)
T ss_pred ChHHHHHHH-HHHHHc--CCCCeEEEEECCCCCCHHHHH
Confidence 567765443 222221 123345799999999999765
No 318
>PRK01172 ski2-like helicase; Provisional
Probab=52.58 E-value=9.8 Score=42.31 Aligned_cols=21 Identities=29% Similarity=0.328 Sum_probs=16.3
Q ss_pred HhhcCCceEEEeecCCCCCccee
Q psy7270 84 HAFEGYNVCIFAYGQTGAGKSYT 106 (459)
Q Consensus 84 ~~l~G~n~ti~aYGqTgSGKT~T 106 (459)
.+.+|-| ++..++||||||..
T Consensus 33 ~l~~~~n--vlv~apTGSGKTl~ 53 (674)
T PRK01172 33 QLRKGEN--VIVSVPTAAGKTLI 53 (674)
T ss_pred HHhcCCc--EEEECCCCchHHHH
Confidence 3467776 57778999999975
No 319
>PRK08233 hypothetical protein; Provisional
Probab=52.53 E-value=6.5 Score=35.25 Aligned_cols=16 Identities=25% Similarity=0.268 Sum_probs=12.3
Q ss_pred EEEeecCCCCCcceee
Q psy7270 92 CIFAYGQTGAGKSYTM 107 (459)
Q Consensus 92 ti~aYGqTgSGKT~Tm 107 (459)
.|+--|++|||||+..
T Consensus 5 iI~I~G~~GsGKtTla 20 (182)
T PRK08233 5 IITIAAVSGGGKTTLT 20 (182)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3555799999999754
No 320
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=52.23 E-value=13 Score=41.83 Aligned_cols=38 Identities=18% Similarity=0.215 Sum_probs=24.4
Q ss_pred CHHHHHHHHHHHHHHHhhcCC------ceEEEeecCCCCCcceee
Q psy7270 69 TQAMVYSDIGEEMLEHAFEGY------NVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 69 sQ~~vy~~~~~plv~~~l~G~------n~ti~aYGqTgSGKT~Tm 107 (459)
.|+++-+.+... +.....|+ .++++-+|+||+|||++.
T Consensus 458 GQ~~ai~~l~~~-i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA 501 (731)
T TIGR02639 458 GQDEAIDSLVSS-IKRSRAGLGNPNKPVGSFLFTGPTGVGKTELA 501 (731)
T ss_pred CcHHHHHHHHHH-HHHHhcCCCCCCCCceeEEEECCCCccHHHHH
Confidence 455555555433 33334454 356889999999999765
No 321
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=51.91 E-value=5.8 Score=36.52 Aligned_cols=15 Identities=33% Similarity=0.419 Sum_probs=12.2
Q ss_pred EEeecCCCCCcceee
Q psy7270 93 IFAYGQTGAGKSYTM 107 (459)
Q Consensus 93 i~aYGqTgSGKT~Tm 107 (459)
|.-.|++|||||+.-
T Consensus 2 IgI~G~sgSGKTTla 16 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLA 16 (194)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 566799999999763
No 322
>PRK14532 adenylate kinase; Provisional
Probab=51.88 E-value=7.5 Score=35.40 Aligned_cols=15 Identities=27% Similarity=0.525 Sum_probs=12.8
Q ss_pred EEEeecCCCCCccee
Q psy7270 92 CIFAYGQTGAGKSYT 106 (459)
Q Consensus 92 ti~aYGqTgSGKT~T 106 (459)
.|+..|++|||||+.
T Consensus 2 ~i~~~G~pGsGKsT~ 16 (188)
T PRK14532 2 NLILFGPPAAGKGTQ 16 (188)
T ss_pred EEEEECCCCCCHHHH
Confidence 378899999999864
No 323
>KOG1029|consensus
Probab=51.87 E-value=3.6e+02 Score=30.48 Aligned_cols=25 Identities=32% Similarity=0.433 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHhhchhHHHH
Q psy7270 351 IRELKEEIQRLRDLLKQEGIEVQEA 375 (459)
Q Consensus 351 i~~l~~ei~~L~~~l~~~~~~~~~~ 375 (459)
|.+|+++|..++..|.....+.+..
T Consensus 488 i~qlqarikE~q~kl~~l~~Ekq~l 512 (1118)
T KOG1029|consen 488 IDQLQARIKELQEKLQKLAPEKQEL 512 (1118)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 4455555555555554443343333
No 324
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=51.83 E-value=11 Score=42.90 Aligned_cols=27 Identities=30% Similarity=0.278 Sum_probs=19.5
Q ss_pred HHHHHHhhcCCceEEEeecCCCCCcceee
Q psy7270 79 EEMLEHAFEGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 79 ~plv~~~l~G~n~ti~aYGqTgSGKT~Tm 107 (459)
..+++.+-++- .|+..|+||||||..+
T Consensus 11 ~~i~~~l~~~~--~vvv~A~TGSGKTt~~ 37 (812)
T PRK11664 11 PELLTALKTAP--QVLLKAPTGAGKSTWL 37 (812)
T ss_pred HHHHHHHHhCC--CEEEEcCCCCCHHHHH
Confidence 45666655543 4678999999999765
No 325
>PHA01747 putative ATP-dependent protease
Probab=51.64 E-value=6.9 Score=39.99 Aligned_cols=29 Identities=21% Similarity=0.308 Sum_probs=25.1
Q ss_pred HHHHHHhhcCCceEEEeecCCCCCcceee
Q psy7270 79 EEMLEHAFEGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 79 ~plv~~~l~G~n~ti~aYGqTgSGKT~Tm 107 (459)
-|+|+.-..+-|.-++=.|+-||||||+.
T Consensus 179 iPlVE~~~~~~NyNliELgPRGTGKS~~f 207 (425)
T PHA01747 179 LPLFTSPVSKRPVHIIELSNRGTGKTTTF 207 (425)
T ss_pred hhheeccCCCCCeeEEEecCCCCChhhHH
Confidence 57787666788999999999999999985
No 326
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=51.59 E-value=13 Score=40.08 Aligned_cols=27 Identities=19% Similarity=0.294 Sum_probs=20.0
Q ss_pred HHHHhhcCCceEEEeecCCCCCcceee
Q psy7270 81 MLEHAFEGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 81 lv~~~l~G~n~ti~aYGqTgSGKT~Tm 107 (459)
+...+..+....|+-||++|+|||+.-
T Consensus 77 l~~al~~~~~~~vLi~Ge~GtGKt~lA 103 (531)
T TIGR02902 77 LKAALCGPNPQHVIIYGPPGVGKTAAA 103 (531)
T ss_pred HHHHHhCCCCceEEEECCCCCCHHHHH
Confidence 334455666677888999999998754
No 327
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=51.54 E-value=9.1 Score=38.81 Aligned_cols=38 Identities=18% Similarity=0.208 Sum_probs=28.1
Q ss_pred CCHHHHHHHHHHHHHHHhhcCCceEEEeecCCCCCcceeecc
Q psy7270 68 ATQAMVYSDIGEEMLEHAFEGYNVCIFAYGQTGAGKSYTMMG 109 (459)
Q Consensus 68 ~sQ~~vy~~~~~plv~~~l~G~n~ti~aYGqTgSGKT~Tm~G 109 (459)
..|+++= .-++-.+++..-+-|+-.|.+|+|||..+-+
T Consensus 7 vgq~~~~----~al~~~~~~~~~g~vli~G~~G~gKttl~r~ 44 (337)
T TIGR02030 7 VGQDEMK----LALLLNVIDPKIGGVMVMGDRGTGKSTAVRA 44 (337)
T ss_pred ccHHHHH----HHHHHHhcCCCCCeEEEEcCCCCCHHHHHHH
Confidence 4566653 4456677777777789999999999987633
No 328
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=51.48 E-value=11 Score=35.38 Aligned_cols=30 Identities=23% Similarity=0.430 Sum_probs=22.5
Q ss_pred HHHHHHHhhc-CC--ceEEEeecCCCCCcceee
Q psy7270 78 GEEMLEHAFE-GY--NVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 78 ~~plv~~~l~-G~--n~ti~aYGqTgSGKT~Tm 107 (459)
+-|-+|.++. |+ ...+.-+|++|||||..+
T Consensus 4 G~~~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~ 36 (226)
T cd01393 4 GSKALDELLGGGIPTGRITEIFGEFGSGKTQLC 36 (226)
T ss_pred CcHHHHHHhCCCCcCCcEEEEeCCCCCChhHHH
Confidence 3466788886 44 356788999999999754
No 329
>PRK13767 ATP-dependent helicase; Provisional
Probab=51.36 E-value=8.5 Score=44.24 Aligned_cols=23 Identities=39% Similarity=0.496 Sum_probs=17.2
Q ss_pred HHhhcCCceEEEeecCCCCCcceee
Q psy7270 83 EHAFEGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 83 ~~~l~G~n~ti~aYGqTgSGKT~Tm 107 (459)
..+++|.|+.| ..+||||||.+.
T Consensus 42 ~~il~g~nvli--~APTGSGKTlaa 64 (876)
T PRK13767 42 PLIHEGKNVLI--SSPTGSGKTLAA 64 (876)
T ss_pred HHHHcCCCEEE--ECCCCCcHHHHH
Confidence 34578988655 569999999863
No 330
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=51.36 E-value=17 Score=35.21 Aligned_cols=30 Identities=17% Similarity=0.185 Sum_probs=22.9
Q ss_pred HHHHHHHhhc--CCceEEEeecCCCCCcceee
Q psy7270 78 GEEMLEHAFE--GYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 78 ~~plv~~~l~--G~n~ti~aYGqTgSGKT~Tm 107 (459)
+..+.+.+.+ .-...|.-||..|+|||...
T Consensus 5 ~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA 36 (287)
T PF00931_consen 5 IEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLA 36 (287)
T ss_dssp HHHHHHHHHTTTTSSEEEEEEESTTSSHHHHH
T ss_pred HHHHHHHhhCCCCCeEEEEEEcCCcCCcceee
Confidence 3456666666 66778999999999999754
No 331
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=51.11 E-value=6 Score=36.39 Aligned_cols=15 Identities=33% Similarity=0.430 Sum_probs=12.4
Q ss_pred EEeecCCCCCcceee
Q psy7270 93 IFAYGQTGAGKSYTM 107 (459)
Q Consensus 93 i~aYGqTgSGKT~Tm 107 (459)
|.--|++|||||+++
T Consensus 2 igi~G~~GsGKSTl~ 16 (198)
T cd02023 2 IGIAGGSGSGKTTVA 16 (198)
T ss_pred EEEECCCCCCHHHHH
Confidence 455799999999876
No 332
>KOG4657|consensus
Probab=50.80 E-value=1.6e+02 Score=28.00 Aligned_cols=14 Identities=21% Similarity=0.271 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHH
Q psy7270 439 QRKSSLRRISKQMK 452 (459)
Q Consensus 439 ~~~~~~~~~~~~~~ 452 (459)
.++++..+..+.+.
T Consensus 139 kRkQdsa~~~e~a~ 152 (246)
T KOG4657|consen 139 KRKQDSADIHEAAS 152 (246)
T ss_pred HHHhhhhccHHHHH
Confidence 44555554444333
No 333
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=50.77 E-value=7.2 Score=36.55 Aligned_cols=16 Identities=44% Similarity=0.546 Sum_probs=13.7
Q ss_pred EEEeecCCCCCcceee
Q psy7270 92 CIFAYGQTGAGKSYTM 107 (459)
Q Consensus 92 ti~aYGqTgSGKT~Tm 107 (459)
.|+-.|.||||||.+.
T Consensus 2 ~IlllG~tGsGKSs~~ 17 (212)
T PF04548_consen 2 RILLLGKTGSGKSSLG 17 (212)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 6889999999999753
No 334
>PRK04040 adenylate kinase; Provisional
Probab=50.76 E-value=7.1 Score=36.00 Aligned_cols=16 Identities=25% Similarity=0.532 Sum_probs=13.8
Q ss_pred EEEeecCCCCCcceee
Q psy7270 92 CIFAYGQTGAGKSYTM 107 (459)
Q Consensus 92 ti~aYGqTgSGKT~Tm 107 (459)
.|+.+|.+|||||+..
T Consensus 4 ~i~v~G~pG~GKtt~~ 19 (188)
T PRK04040 4 VVVVTGVPGVGKTTVL 19 (188)
T ss_pred EEEEEeCCCCCHHHHH
Confidence 4788999999999865
No 335
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=50.72 E-value=7.4 Score=35.11 Aligned_cols=16 Identities=38% Similarity=0.600 Sum_probs=13.4
Q ss_pred EEEeecCCCCCcceee
Q psy7270 92 CIFAYGQTGAGKSYTM 107 (459)
Q Consensus 92 ti~aYGqTgSGKT~Tm 107 (459)
.|+..|+.|||||+..
T Consensus 5 ii~i~G~~GsGKsTl~ 20 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQC 20 (188)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4677999999999864
No 336
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=50.59 E-value=1.6e+02 Score=27.46 Aligned_cols=55 Identities=31% Similarity=0.421 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhhcccccceecccchHHHHHHHHHHHHHHHHHHHhhchhHHHHHH
Q psy7270 323 TLSTLRYADRAKQIVCKAIVNEDANAKLIRELKEEIQRLRDLLKQEGIEVQEASE 377 (459)
Q Consensus 323 TlsTL~fa~rak~I~n~~~~n~~~~~~~i~~l~~ei~~L~~~l~~~~~~~~~~~~ 377 (459)
|.+-|..=...|.=...-..++......+.++..|+.+|..-|.....++.+...
T Consensus 22 T~~NL~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k 76 (201)
T PF13851_consen 22 TLNNLELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRK 76 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 4444544444443333333344555667777788888887777665555544433
No 337
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=50.37 E-value=7.1 Score=30.38 Aligned_cols=15 Identities=33% Similarity=0.521 Sum_probs=12.1
Q ss_pred EEeecCCCCCcceee
Q psy7270 93 IFAYGQTGAGKSYTM 107 (459)
Q Consensus 93 i~aYGqTgSGKT~Tm 107 (459)
++.+|..|+|||.+.
T Consensus 2 ~~~~g~~G~Gktt~~ 16 (99)
T cd01983 2 IVVTGKGGVGKTTLA 16 (99)
T ss_pred EEEECCCCCCHHHHH
Confidence 466788899999876
No 338
>PTZ00110 helicase; Provisional
Probab=50.34 E-value=9.3 Score=41.38 Aligned_cols=24 Identities=25% Similarity=0.508 Sum_probs=18.6
Q ss_pred HHHhhcCCceEEEeecCCCCCcceee
Q psy7270 82 LEHAFEGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 82 v~~~l~G~n~ti~aYGqTgSGKT~Tm 107 (459)
+..++.|.|. ++.++||||||.+.
T Consensus 161 ip~~l~G~dv--I~~ApTGSGKTlay 184 (545)
T PTZ00110 161 WPIALSGRDM--IGIAETGSGKTLAF 184 (545)
T ss_pred HHHHhcCCCE--EEEeCCCChHHHHH
Confidence 4557889876 56679999999763
No 339
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=50.10 E-value=4.8 Score=38.10 Aligned_cols=12 Identities=42% Similarity=0.476 Sum_probs=10.7
Q ss_pred ecCCCCCcceee
Q psy7270 96 YGQTGAGKSYTM 107 (459)
Q Consensus 96 YGqTgSGKT~Tm 107 (459)
-|++|||||+++
T Consensus 5 ~G~sGSGKTTla 16 (220)
T cd02025 5 AGSVAVGKSTTA 16 (220)
T ss_pred eCCCCCCHHHHH
Confidence 499999999886
No 340
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=50.03 E-value=12 Score=41.19 Aligned_cols=32 Identities=25% Similarity=0.282 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHhhcCCceEEEeecCCCCCcceee
Q psy7270 70 QAMVYSDIGEEMLEHAFEGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 70 Q~~vy~~~~~plv~~~l~G~n~ti~aYGqTgSGKT~Tm 107 (459)
|.++|+.+...+ -+| ..+++-.+||||||+..
T Consensus 2 Q~~~~~~i~~al----~~~--~~lliEA~TGtGKTlAY 33 (636)
T TIGR03117 2 QALFYLNCLTSL----RQK--RIGMLEASTGVGKTLAM 33 (636)
T ss_pred HHHHHHHHHHHH----hcC--CeEEEEcCCCCcHHHHH
Confidence 777876654333 333 56788999999999654
No 341
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=49.96 E-value=11 Score=35.36 Aligned_cols=29 Identities=28% Similarity=0.433 Sum_probs=21.7
Q ss_pred HHHHHHhhc-CC--ceEEEeecCCCCCcceee
Q psy7270 79 EEMLEHAFE-GY--NVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 79 ~plv~~~l~-G~--n~ti~aYGqTgSGKT~Tm 107 (459)
-+-++.++. |+ ..+++-+|++|+|||+..
T Consensus 6 i~~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~ 37 (229)
T TIGR03881 6 VEGLDKLLEGGIPRGFFVAVTGEPGTGKTIFC 37 (229)
T ss_pred hhhHHHhhcCCCcCCeEEEEECCCCCChHHHH
Confidence 345677774 55 467888999999998754
No 342
>KOG0745|consensus
Probab=49.94 E-value=7.8 Score=40.37 Aligned_cols=15 Identities=33% Similarity=0.645 Sum_probs=13.0
Q ss_pred eEEEeecCCCCCcce
Q psy7270 91 VCIFAYGQTGAGKSY 105 (459)
Q Consensus 91 ~ti~aYGqTgSGKT~ 105 (459)
+.|+..|+||||||+
T Consensus 227 SNvLllGPtGsGKTl 241 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTL 241 (564)
T ss_pred ccEEEECCCCCchhH
Confidence 457889999999997
No 343
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=49.93 E-value=12 Score=36.24 Aligned_cols=24 Identities=25% Similarity=0.534 Sum_probs=17.7
Q ss_pred HHHhhcC---CceEEEeecCCCCCcce
Q psy7270 82 LEHAFEG---YNVCIFAYGQTGAGKSY 105 (459)
Q Consensus 82 v~~~l~G---~n~ti~aYGqTgSGKT~ 105 (459)
++.++.| .+..++-||.+|||||.
T Consensus 12 lD~~l~GG~p~g~~~lI~G~pGsGKT~ 38 (260)
T COG0467 12 LDEILGGGLPRGSVVLITGPPGTGKTI 38 (260)
T ss_pred hHHHhcCCCcCCcEEEEEcCCCCcHHH
Confidence 4555553 34678999999999984
No 344
>PRK13531 regulatory ATPase RavA; Provisional
Probab=49.76 E-value=13 Score=39.61 Aligned_cols=27 Identities=30% Similarity=0.400 Sum_probs=19.2
Q ss_pred HHHHHHhhcCCceEEEeecCCCCCcceee
Q psy7270 79 EEMLEHAFEGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 79 ~plv~~~l~G~n~ti~aYGqTgSGKT~Tm 107 (459)
.-++..++.|-| |+-+|++|+|||+..
T Consensus 30 ~lll~aalag~h--VLL~GpPGTGKT~LA 56 (498)
T PRK13531 30 RLCLLAALSGES--VFLLGPPGIAKSLIA 56 (498)
T ss_pred HHHHHHHccCCC--EEEECCCChhHHHHH
Confidence 344455555555 588999999999864
No 345
>PRK06762 hypothetical protein; Provisional
Probab=49.69 E-value=8.4 Score=34.22 Aligned_cols=14 Identities=36% Similarity=0.638 Sum_probs=11.9
Q ss_pred EEEeecCCCCCcce
Q psy7270 92 CIFAYGQTGAGKSY 105 (459)
Q Consensus 92 ti~aYGqTgSGKT~ 105 (459)
.|+-.|.+|||||+
T Consensus 4 li~i~G~~GsGKST 17 (166)
T PRK06762 4 LIIIRGNSGSGKTT 17 (166)
T ss_pred EEEEECCCCCCHHH
Confidence 56778999999987
No 346
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=49.68 E-value=15 Score=37.49 Aligned_cols=28 Identities=18% Similarity=0.275 Sum_probs=19.7
Q ss_pred HHHHHhhcCC-ceEEEeecCCCCCcceee
Q psy7270 80 EMLEHAFEGY-NVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 80 plv~~~l~G~-n~ti~aYGqTgSGKT~Tm 107 (459)
.+...+-.|. ...++-||+.|+|||++.
T Consensus 28 ~l~~~i~~~~~~~~~L~~G~~G~GKt~~a 56 (367)
T PRK14970 28 TLLNAIENNHLAQALLFCGPRGVGKTTCA 56 (367)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHH
Confidence 3444444564 457888999999999765
No 347
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=49.58 E-value=8.8 Score=31.64 Aligned_cols=15 Identities=33% Similarity=0.678 Sum_probs=12.5
Q ss_pred EEeecCCCCCcceee
Q psy7270 93 IFAYGQTGAGKSYTM 107 (459)
Q Consensus 93 i~aYGqTgSGKT~Tm 107 (459)
|+..|..|+|||.-+
T Consensus 2 I~V~G~~g~GKTsLi 16 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLI 16 (119)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECcCCCCHHHHH
Confidence 678899999998654
No 348
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=49.52 E-value=13 Score=36.81 Aligned_cols=20 Identities=35% Similarity=0.419 Sum_probs=17.6
Q ss_pred CCceEEEeecCCCCCcceee
Q psy7270 88 GYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 88 G~n~ti~aYGqTgSGKT~Tm 107 (459)
.-+.+|.-||+=|||||+-|
T Consensus 18 ~~~~~IgL~G~WGsGKSs~l 37 (325)
T PF07693_consen 18 DDPFVIGLYGEWGSGKSSFL 37 (325)
T ss_pred CCCeEEEEECCCCCCHHHHH
Confidence 56789999999999999876
No 349
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=49.39 E-value=8.1 Score=40.29 Aligned_cols=17 Identities=35% Similarity=0.534 Sum_probs=15.1
Q ss_pred eEEEeecCCCCCcceee
Q psy7270 91 VCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 91 ~ti~aYGqTgSGKT~Tm 107 (459)
+.|+-+|+||+|||+..
T Consensus 117 ~~iLL~GP~GsGKT~lA 133 (413)
T TIGR00382 117 SNILLIGPTGSGKTLLA 133 (413)
T ss_pred ceEEEECCCCcCHHHHH
Confidence 57999999999999865
No 350
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=49.36 E-value=17 Score=41.63 Aligned_cols=38 Identities=26% Similarity=0.338 Sum_probs=24.6
Q ss_pred CHHHHHHHHHHHHHHHhhcCCc------eEEEeecCCCCCcceee
Q psy7270 69 TQAMVYSDIGEEMLEHAFEGYN------VCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 69 sQ~~vy~~~~~plv~~~l~G~n------~ti~aYGqTgSGKT~Tm 107 (459)
.|++.-..++. .|..+..|.+ ++++-.|+||+|||+..
T Consensus 570 GQ~~Av~~v~~-~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA 613 (852)
T TIGR03345 570 GQDHALEAIAE-RIRTARAGLEDPRKPLGVFLLVGPSGVGKTETA 613 (852)
T ss_pred ChHHHHHHHHH-HHHHHhcCCCCCCCCceEEEEECCCCCCHHHHH
Confidence 45555555443 3334444554 57899999999999864
No 351
>PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein. It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A.
Probab=49.23 E-value=5.9 Score=40.92 Aligned_cols=16 Identities=38% Similarity=0.677 Sum_probs=12.3
Q ss_pred EEEeecCCCCCcceee
Q psy7270 92 CIFAYGQTGAGKSYTM 107 (459)
Q Consensus 92 ti~aYGqTgSGKT~Tm 107 (459)
-++..|.||||||.+|
T Consensus 17 ~~li~G~~GsGKT~~i 32 (386)
T PF10412_consen 17 HILIIGATGSGKTQAI 32 (386)
T ss_dssp -EEEEE-TTSSHHHHH
T ss_pred cEEEECCCCCCHHHHH
Confidence 4688899999999876
No 352
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=49.19 E-value=7.8 Score=36.67 Aligned_cols=15 Identities=33% Similarity=0.503 Sum_probs=11.5
Q ss_pred EEeecCCCCCcceee
Q psy7270 93 IFAYGQTGAGKSYTM 107 (459)
Q Consensus 93 i~aYGqTgSGKT~Tm 107 (459)
++-+|+||||||..-
T Consensus 4 ~~i~GpT~tGKt~~a 18 (233)
T PF01745_consen 4 YLIVGPTGTGKTALA 18 (233)
T ss_dssp EEEE-STTSSHHHHH
T ss_pred EEEECCCCCChhHHH
Confidence 567899999999763
No 353
>KOG1547|consensus
Probab=49.07 E-value=21 Score=34.35 Aligned_cols=20 Identities=40% Similarity=0.662 Sum_probs=18.1
Q ss_pred hcCCceEEEeecCCCCCcce
Q psy7270 86 FEGYNVCIFAYGQTGAGKSY 105 (459)
Q Consensus 86 l~G~n~ti~aYGqTgSGKT~ 105 (459)
-.||.-.|+..||+|.|||.
T Consensus 42 k~GF~FNIMVVgqSglgkst 61 (336)
T KOG1547|consen 42 KTGFDFNIMVVGQSGLGKST 61 (336)
T ss_pred hccCceEEEEEecCCCCchh
Confidence 36999999999999999974
No 354
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=48.98 E-value=12 Score=39.58 Aligned_cols=18 Identities=28% Similarity=0.628 Sum_probs=15.6
Q ss_pred eEEEeecCCCCCcceeec
Q psy7270 91 VCIFAYGQTGAGKSYTMM 108 (459)
Q Consensus 91 ~ti~aYGqTgSGKT~Tm~ 108 (459)
.-++.+|+||||||.++.
T Consensus 45 ~h~lvig~tgSGKt~~~v 62 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFV 62 (469)
T ss_pred eEEEEEeCCCCCccceee
Confidence 568999999999998873
No 355
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=48.92 E-value=8.6 Score=33.23 Aligned_cols=21 Identities=24% Similarity=0.347 Sum_probs=16.6
Q ss_pred cCCceEEEeecCCCCCcceee
Q psy7270 87 EGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 87 ~G~n~ti~aYGqTgSGKT~Tm 107 (459)
...+..|+-+|..||||++..
T Consensus 18 a~~~~pvli~GE~GtGK~~~A 38 (138)
T PF14532_consen 18 AKSSSPVLITGEPGTGKSLLA 38 (138)
T ss_dssp HCSSS-EEEECCTTSSHHHHH
T ss_pred hCCCCcEEEEcCCCCCHHHHH
Confidence 367778899999999999753
No 356
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=48.89 E-value=8.9 Score=34.47 Aligned_cols=16 Identities=38% Similarity=0.520 Sum_probs=13.2
Q ss_pred EEEeecCCCCCcceee
Q psy7270 92 CIFAYGQTGAGKSYTM 107 (459)
Q Consensus 92 ti~aYGqTgSGKT~Tm 107 (459)
.|+-.|++|||||..+
T Consensus 3 ii~l~G~~GsGKsTl~ 18 (180)
T TIGR03263 3 LIVISGPSGVGKSTLV 18 (180)
T ss_pred EEEEECCCCCCHHHHH
Confidence 5778899999998743
No 357
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=48.86 E-value=9.1 Score=38.14 Aligned_cols=15 Identities=40% Similarity=0.729 Sum_probs=12.9
Q ss_pred EEEeecCCCCCccee
Q psy7270 92 CIFAYGQTGAGKSYT 106 (459)
Q Consensus 92 ti~aYGqTgSGKT~T 106 (459)
.|+-.|+||||||--
T Consensus 6 ii~I~GpTasGKS~L 20 (300)
T PRK14729 6 IVFIFGPTAVGKSNI 20 (300)
T ss_pred EEEEECCCccCHHHH
Confidence 578899999999863
No 358
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=48.64 E-value=8.3 Score=34.19 Aligned_cols=16 Identities=31% Similarity=0.436 Sum_probs=13.3
Q ss_pred EEEeecCCCCCcceee
Q psy7270 92 CIFAYGQTGAGKSYTM 107 (459)
Q Consensus 92 ti~aYGqTgSGKT~Tm 107 (459)
.|.-+|++|||||+..
T Consensus 2 iI~i~G~~GSGKstia 17 (171)
T TIGR02173 2 IITISGPPGSGKTTVA 17 (171)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4778999999998754
No 359
>KOG0735|consensus
Probab=48.52 E-value=8.1 Score=42.65 Aligned_cols=20 Identities=30% Similarity=0.547 Sum_probs=16.5
Q ss_pred CCceEEEeecCCCCCcceee
Q psy7270 88 GYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 88 G~n~ti~aYGqTgSGKT~Tm 107 (459)
-....|+-||+.|+||||-.
T Consensus 699 r~~~giLLyGppGcGKT~la 718 (952)
T KOG0735|consen 699 RLRTGILLYGPPGCGKTLLA 718 (952)
T ss_pred ccccceEEECCCCCcHHHHH
Confidence 34467999999999999964
No 360
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=48.29 E-value=2e+02 Score=32.27 Aligned_cols=44 Identities=20% Similarity=0.238 Sum_probs=23.6
Q ss_pred CHHHHHHHHHHHHHhhcccccceecccchHHHHHHHHHHHHHHHHHHHhhc
Q psy7270 319 NYDETLSTLRYADRAKQIVCKAIVNEDANAKLIRELKEEIQRLRDLLKQEG 369 (459)
Q Consensus 319 ~~~eTlsTL~fa~rak~I~n~~~~n~~~~~~~i~~l~~ei~~L~~~l~~~~ 369 (459)
.++..++.|-+......|.... +-.+..|+.|+.+|+..|.-.+
T Consensus 364 EvE~cislLPav~g~tniq~EI-------ALA~QplrsENaqLrRrLriln 407 (861)
T PF15254_consen 364 EVEACISLLPAVSGSTNIQVEI-------ALAMQPLRSENAQLRRRLRILN 407 (861)
T ss_pred HHHHHHHhhhhhhccccchhhh-------HhhhhhhhhhhHHHHHHHHHHH
Confidence 4566666666555544443211 1124567777777776665433
No 361
>PRK03839 putative kinase; Provisional
Probab=48.20 E-value=8.3 Score=34.84 Aligned_cols=14 Identities=36% Similarity=0.520 Sum_probs=12.0
Q ss_pred EEeecCCCCCccee
Q psy7270 93 IFAYGQTGAGKSYT 106 (459)
Q Consensus 93 i~aYGqTgSGKT~T 106 (459)
|+-.|.+|||||+.
T Consensus 3 I~l~G~pGsGKsT~ 16 (180)
T PRK03839 3 IAITGTPGVGKTTV 16 (180)
T ss_pred EEEECCCCCCHHHH
Confidence 67789999999864
No 362
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=48.16 E-value=9.3 Score=35.94 Aligned_cols=26 Identities=23% Similarity=0.424 Sum_probs=19.4
Q ss_pred HHHHHhhc-C--CceEEEeecCCCCCcce
Q psy7270 80 EMLEHAFE-G--YNVCIFAYGQTGAGKSY 105 (459)
Q Consensus 80 plv~~~l~-G--~n~ti~aYGqTgSGKT~ 105 (459)
|-+|.++. | .+++++.+|++|||||.
T Consensus 6 ~~LD~~l~GGip~gs~~li~G~~GsGKT~ 34 (226)
T PF06745_consen 6 PGLDELLGGGIPKGSVVLISGPPGSGKTT 34 (226)
T ss_dssp TTHHHHTTTSEETTSEEEEEESTTSSHHH
T ss_pred hhHHHhhcCCCCCCcEEEEEeCCCCCcHH
Confidence 34566674 3 35789999999999974
No 363
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=48.15 E-value=19 Score=37.68 Aligned_cols=18 Identities=33% Similarity=0.453 Sum_probs=16.0
Q ss_pred ceEEEeecCCCCCcceee
Q psy7270 90 NVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 90 n~ti~aYGqTgSGKT~Tm 107 (459)
...|+-.|.+|+|||+|.
T Consensus 100 ~~vi~lvG~~GvGKTTta 117 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTC 117 (429)
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 467899999999999997
No 364
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=48.11 E-value=2.3e+02 Score=30.06 Aligned_cols=30 Identities=20% Similarity=0.364 Sum_probs=13.0
Q ss_pred HHHHHchHHHHHHHHHHHHHHHHHHHHHHH
Q psy7270 402 LLEKQGVDLKQEMQQRLRDLEEQYKREKNE 431 (459)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 431 (459)
.|++....+.+++++.+.....++.++.++
T Consensus 91 ~L~~r~~~id~~i~~av~~~~~~~~~~~~q 120 (472)
T TIGR03752 91 RLQKREQSIDQQIQQAVQSETQELTKEIEQ 120 (472)
T ss_pred HHHHhhhhHHHHHHHHHHhhhHHHHHHHHH
Confidence 334433444444555544444444433333
No 365
>PHA02774 E1; Provisional
Probab=47.89 E-value=13 Score=40.43 Aligned_cols=27 Identities=30% Similarity=0.567 Sum_probs=20.0
Q ss_pred HHHHhhcCCc--eEEEeecCCCCCcceee
Q psy7270 81 MLEHAFEGYN--VCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 81 lv~~~l~G~n--~ti~aYGqTgSGKT~Tm 107 (459)
.+..++.|.- .|++-||+.|+||||--
T Consensus 423 ~lk~~l~~~PKknciv~~GPP~TGKS~fa 451 (613)
T PHA02774 423 ALKDFLKGIPKKNCLVIYGPPDTGKSMFC 451 (613)
T ss_pred HHHHHHhcCCcccEEEEECCCCCCHHHHH
Confidence 3455566644 58999999999998753
No 366
>PRK14527 adenylate kinase; Provisional
Probab=47.84 E-value=9.4 Score=34.97 Aligned_cols=17 Identities=29% Similarity=0.456 Sum_probs=14.1
Q ss_pred eEEEeecCCCCCcceee
Q psy7270 91 VCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 91 ~ti~aYGqTgSGKT~Tm 107 (459)
-.|+.+|++|||||...
T Consensus 7 ~~i~i~G~pGsGKsT~a 23 (191)
T PRK14527 7 KVVIFLGPPGAGKGTQA 23 (191)
T ss_pred cEEEEECCCCCCHHHHH
Confidence 46899999999998743
No 367
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=47.73 E-value=3.4e+02 Score=29.69 Aligned_cols=15 Identities=27% Similarity=0.295 Sum_probs=7.6
Q ss_pred ccCCCCCCHHHHHHH
Q psy7270 312 AISPADINYDETLST 326 (459)
Q Consensus 312 ~isp~~~~~~eTlsT 326 (459)
.++++.+|.-++|..
T Consensus 335 ~~~~~ddH~RDALAA 349 (652)
T COG2433 335 KISVSDDHERDALAA 349 (652)
T ss_pred CCCCCCchHHHHHHH
Confidence 345555555555443
No 368
>PRK04296 thymidine kinase; Provisional
Probab=47.48 E-value=6.8 Score=36.10 Aligned_cols=19 Identities=32% Similarity=0.527 Sum_probs=15.1
Q ss_pred eEEEeecCCCCCcceeecc
Q psy7270 91 VCIFAYGQTGAGKSYTMMG 109 (459)
Q Consensus 91 ~ti~aYGqTgSGKT~Tm~G 109 (459)
..++-+|+.|+|||..+.+
T Consensus 3 ~i~litG~~GsGKTT~~l~ 21 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQ 21 (190)
T ss_pred EEEEEECCCCCHHHHHHHH
Confidence 3567899999999977644
No 369
>PTZ00014 myosin-A; Provisional
Probab=47.42 E-value=18 Score=41.08 Aligned_cols=33 Identities=27% Similarity=0.423 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHhh-cCCceEEEeecCCCCCccee
Q psy7270 73 VYSDIGEEMLEHAF-EGYNVCIFAYGQTGAGKSYT 106 (459)
Q Consensus 73 vy~~~~~plv~~~l-~G~n~ti~aYGqTgSGKT~T 106 (459)
||... .....+++ .+.|-||+.-|.+|||||.|
T Consensus 166 ifavA-~~Ay~~m~~~~~~QsIiiSGESGAGKTe~ 199 (821)
T PTZ00014 166 VFTTA-RRALENLHGVKKSQTIIVSGESGAGKTEA 199 (821)
T ss_pred HHHHH-HHHHHHHHhcCCCceEEEEcCCCCCchHH
Confidence 55332 33344444 69999999999999999965
No 370
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=47.40 E-value=16 Score=36.37 Aligned_cols=29 Identities=21% Similarity=0.362 Sum_probs=21.5
Q ss_pred HHHHHHhhcCC---ceEEEeecCCCCCcceee
Q psy7270 79 EEMLEHAFEGY---NVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 79 ~plv~~~l~G~---n~ti~aYGqTgSGKT~Tm 107 (459)
.+-++.++.|- ...+.-||++|||||.-+
T Consensus 81 ~~~lD~~l~GGi~~g~i~ei~G~~g~GKT~l~ 112 (310)
T TIGR02236 81 SKELDELLGGGIETQAITEVFGEFGSGKTQIC 112 (310)
T ss_pred CHHHHHHhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 45577777743 456789999999999753
No 371
>KOG4360|consensus
Probab=47.35 E-value=1.5e+02 Score=31.49 Aligned_cols=16 Identities=25% Similarity=0.592 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHH
Q psy7270 413 EMQQRLRDLEEQYKRE 428 (459)
Q Consensus 413 ~~~~~~~~~~~~~~~~ 428 (459)
+++..++++++++.+.
T Consensus 272 ql~aE~~EleDkyAE~ 287 (596)
T KOG4360|consen 272 QLTAELEELEDKYAEC 287 (596)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444455555544433
No 372
>PRK00300 gmk guanylate kinase; Provisional
Probab=47.32 E-value=8.3 Score=35.54 Aligned_cols=18 Identities=39% Similarity=0.538 Sum_probs=14.0
Q ss_pred ceEEEeecCCCCCcceee
Q psy7270 90 NVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 90 n~ti~aYGqTgSGKT~Tm 107 (459)
+..|.-.|++|||||..+
T Consensus 5 g~~i~i~G~sGsGKstl~ 22 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLV 22 (205)
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 346788899999998644
No 373
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=47.28 E-value=7.5 Score=39.59 Aligned_cols=13 Identities=31% Similarity=0.634 Sum_probs=11.5
Q ss_pred eecCCCCCcceee
Q psy7270 95 AYGQTGAGKSYTM 107 (459)
Q Consensus 95 aYGqTgSGKT~Tm 107 (459)
-.|++|||||++|
T Consensus 36 lLGPSGcGKTTlL 48 (352)
T COG3842 36 LLGPSGCGKTTLL 48 (352)
T ss_pred EECCCCCCHHHHH
Confidence 4699999999986
No 374
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=47.15 E-value=10 Score=34.24 Aligned_cols=20 Identities=25% Similarity=0.476 Sum_probs=16.5
Q ss_pred cCCceEEEeecCCCCCccee
Q psy7270 87 EGYNVCIFAYGQTGAGKSYT 106 (459)
Q Consensus 87 ~G~n~ti~aYGqTgSGKT~T 106 (459)
..++..|+-+|.+||||+..
T Consensus 19 a~~~~pVlI~GE~GtGK~~l 38 (168)
T PF00158_consen 19 ASSDLPVLITGETGTGKELL 38 (168)
T ss_dssp TTSTS-EEEECSTTSSHHHH
T ss_pred hCCCCCEEEEcCCCCcHHHH
Confidence 47889999999999999864
No 375
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=47.02 E-value=8.2 Score=41.52 Aligned_cols=17 Identities=47% Similarity=0.558 Sum_probs=14.3
Q ss_pred eEEEeecCCCCCcceee
Q psy7270 91 VCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 91 ~ti~aYGqTgSGKT~Tm 107 (459)
..|.-.|++|+|||+|+
T Consensus 351 ~vIaLVGPtGvGKTTta 367 (559)
T PRK12727 351 GVIALVGPTGAGKTTTI 367 (559)
T ss_pred CEEEEECCCCCCHHHHH
Confidence 45666699999999997
No 376
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=46.88 E-value=8.5 Score=33.90 Aligned_cols=14 Identities=43% Similarity=0.672 Sum_probs=11.7
Q ss_pred EEeecCCCCCccee
Q psy7270 93 IFAYGQTGAGKSYT 106 (459)
Q Consensus 93 i~aYGqTgSGKT~T 106 (459)
|+-.|.+|||||+.
T Consensus 2 i~i~G~~GsGKSTl 15 (149)
T cd02027 2 IWLTGLSGSGKSTI 15 (149)
T ss_pred EEEEcCCCCCHHHH
Confidence 67789999999764
No 377
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=46.69 E-value=7.8 Score=39.25 Aligned_cols=15 Identities=33% Similarity=0.636 Sum_probs=12.9
Q ss_pred EEeecCCCCCcceee
Q psy7270 93 IFAYGQTGAGKSYTM 107 (459)
Q Consensus 93 i~aYGqTgSGKT~Tm 107 (459)
+.-.|++|||||.+|
T Consensus 32 ~vllGPSGcGKSTlL 46 (338)
T COG3839 32 VVLLGPSGCGKSTLL 46 (338)
T ss_pred EEEECCCCCCHHHHH
Confidence 556799999999986
No 378
>KOG0741|consensus
Probab=46.67 E-value=10 Score=40.48 Aligned_cols=14 Identities=43% Similarity=0.847 Sum_probs=12.9
Q ss_pred EEEeecCCCCCcce
Q psy7270 92 CIFAYGQTGAGKSY 105 (459)
Q Consensus 92 ti~aYGqTgSGKT~ 105 (459)
.|+-|||.|+|||-
T Consensus 258 GiLLyGPPGTGKTL 271 (744)
T KOG0741|consen 258 GILLYGPPGTGKTL 271 (744)
T ss_pred eEEEECCCCCChhH
Confidence 58999999999996
No 379
>KOG4673|consensus
Probab=46.65 E-value=1.6e+02 Score=32.55 Aligned_cols=36 Identities=25% Similarity=0.415 Sum_probs=20.5
Q ss_pred HHhhcccccceecc---cchHHHHHHHHHHHHHHHHHHH
Q psy7270 331 DRAKQIVCKAIVNE---DANAKLIRELKEEIQRLRDLLK 366 (459)
Q Consensus 331 ~rak~I~n~~~~n~---~~~~~~i~~l~~ei~~L~~~l~ 366 (459)
..+|+++-+-+-++ .....+|..|+.|.++|+.-|.
T Consensus 474 ~iIkKLRAk~ke~etl~~K~ge~i~~L~sE~~~lk~il~ 512 (961)
T KOG4673|consen 474 AIIKKLRAKIKEAETLEEKKGELITKLQSEENKLKSILR 512 (961)
T ss_pred HHHHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHhh
Confidence 34444444444443 1233477788888888876663
No 380
>PRK14530 adenylate kinase; Provisional
Probab=46.48 E-value=9.2 Score=35.80 Aligned_cols=15 Identities=40% Similarity=0.587 Sum_probs=12.7
Q ss_pred EEEeecCCCCCccee
Q psy7270 92 CIFAYGQTGAGKSYT 106 (459)
Q Consensus 92 ti~aYGqTgSGKT~T 106 (459)
.|+-.|++|||||+-
T Consensus 5 ~I~i~G~pGsGKsT~ 19 (215)
T PRK14530 5 RILLLGAPGAGKGTQ 19 (215)
T ss_pred EEEEECCCCCCHHHH
Confidence 477899999999864
No 381
>PF10923 DUF2791: P-loop Domain of unknown function (DUF2791); InterPro: IPR021228 This is a family of proteins found in archaea and bacteria. Some of the proteins in this family are annotated as being methyl-accepting chemotaxis proteins and ATP/GTP binding proteins.
Probab=46.42 E-value=18 Score=37.72 Aligned_cols=38 Identities=18% Similarity=0.345 Sum_probs=29.0
Q ss_pred CHHHHHHHHHHHHHHHhhcCCceEEEeecCCCCCcceee
Q psy7270 69 TQAMVYSDIGEEMLEHAFEGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 69 sQ~~vy~~~~~plv~~~l~G~n~ti~aYGqTgSGKT~Tm 107 (459)
..+..-+.+.. -++.+-+|-...-|..|.-||||||.+
T Consensus 29 Gr~~e~~~l~~-~l~~v~~G~s~~kfi~G~YGsGKTf~l 66 (416)
T PF10923_consen 29 GREREIEALDR-DLDRVADGGSSFKFIRGEYGSGKTFFL 66 (416)
T ss_pred chHHHHHHHHH-HHHHHhCCCCeEEEEEeCCCCcHHHHH
Confidence 33444444434 468888999999999999999999975
No 382
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=46.33 E-value=9.4 Score=35.58 Aligned_cols=14 Identities=29% Similarity=0.577 Sum_probs=12.1
Q ss_pred EEeecCCCCCccee
Q psy7270 93 IFAYGQTGAGKSYT 106 (459)
Q Consensus 93 i~aYGqTgSGKT~T 106 (459)
|+.+|++|||||+.
T Consensus 2 I~i~G~pGsGKsT~ 15 (210)
T TIGR01351 2 LVLLGPPGSGKGTQ 15 (210)
T ss_pred EEEECCCCCCHHHH
Confidence 67899999999863
No 383
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=46.25 E-value=8.7 Score=35.08 Aligned_cols=16 Identities=31% Similarity=0.630 Sum_probs=13.0
Q ss_pred EEEeecCCCCCcceee
Q psy7270 92 CIFAYGQTGAGKSYTM 107 (459)
Q Consensus 92 ti~aYGqTgSGKT~Tm 107 (459)
.|+-.|++|||||..+
T Consensus 4 ~i~l~G~sGsGKsTl~ 19 (186)
T PRK10078 4 LIWLMGPSGSGKDSLL 19 (186)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4667899999998764
No 384
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=46.24 E-value=16 Score=34.32 Aligned_cols=26 Identities=27% Similarity=0.494 Sum_probs=19.3
Q ss_pred HHHHhhc-CC--ceEEEeecCCCCCccee
Q psy7270 81 MLEHAFE-GY--NVCIFAYGQTGAGKSYT 106 (459)
Q Consensus 81 lv~~~l~-G~--n~ti~aYGqTgSGKT~T 106 (459)
-++.++. |+ ...++-+|.+|+|||.-
T Consensus 4 ~LD~~l~gGi~~g~~~li~G~~G~GKt~~ 32 (224)
T TIGR03880 4 GLDEMLGGGFPEGHVIVVIGEYGTGKTTF 32 (224)
T ss_pred hhHHHhcCCCCCCeEEEEECCCCCCHHHH
Confidence 4567775 54 56777899999999864
No 385
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=46.21 E-value=8.1 Score=32.70 Aligned_cols=16 Identities=31% Similarity=0.399 Sum_probs=13.3
Q ss_pred EEEeecCCCCCcceee
Q psy7270 92 CIFAYGQTGAGKSYTM 107 (459)
Q Consensus 92 ti~aYGqTgSGKT~Tm 107 (459)
-|..+|.+|||||..+
T Consensus 3 ki~~~G~~~~GKstl~ 18 (161)
T TIGR00231 3 KIVIVGDPNVGKSTLL 18 (161)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678899999999754
No 386
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=46.04 E-value=14 Score=37.27 Aligned_cols=30 Identities=30% Similarity=0.401 Sum_probs=23.6
Q ss_pred HHHHHHHHhhc--CCc--eEEEeecCCCCCccee
Q psy7270 77 IGEEMLEHAFE--GYN--VCIFAYGQTGAGKSYT 106 (459)
Q Consensus 77 ~~~plv~~~l~--G~n--~ti~aYGqTgSGKT~T 106 (459)
++-|-+|.+|. |+. ..+.-||++|||||.-
T Consensus 38 TGi~~LD~~Lg~GGlp~G~iteI~G~~GsGKTtL 71 (321)
T TIGR02012 38 TGSLSLDLALGVGGLPRGRIIEIYGPESSGKTTL 71 (321)
T ss_pred CCCHHHHHHhcCCCCcCCeEEEEECCCCCCHHHH
Confidence 34577888885 665 4788999999999865
No 387
>TIGR00929 VirB4_CagE type IV secretion/conjugal transfer ATPase, VirB4 family. Type IV secretion systems are found in Gram-negative pathogens. They export proteins, DNA, or complexes in different systems and are related to plasmid conjugation systems. This model represents related ATPases that include VirB4 in Agrobacterium tumefaciens (DNA export) CagE in Helicobacter pylori (protein export) and plasmid TraB (conjugation).
Probab=46.04 E-value=8.3 Score=43.58 Aligned_cols=18 Identities=28% Similarity=0.475 Sum_probs=16.3
Q ss_pred ceEEEeecCCCCCcceee
Q psy7270 90 NVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 90 n~ti~aYGqTgSGKT~Tm 107 (459)
|+-++..|+||||||++|
T Consensus 434 ~~n~~I~G~tGsGKS~~~ 451 (785)
T TIGR00929 434 LGHTLIFGPTGSGKTTLL 451 (785)
T ss_pred CceEEEECCCCCCHHHHH
Confidence 777889999999999987
No 388
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=46.03 E-value=8.1 Score=36.83 Aligned_cols=15 Identities=33% Similarity=0.581 Sum_probs=12.4
Q ss_pred EEeecCCCCCcceee
Q psy7270 93 IFAYGQTGAGKSYTM 107 (459)
Q Consensus 93 i~aYGqTgSGKT~Tm 107 (459)
|.-.|++|||||.-|
T Consensus 34 vaI~GpSGSGKSTLL 48 (226)
T COG1136 34 VAIVGPSGSGKSTLL 48 (226)
T ss_pred EEEECCCCCCHHHHH
Confidence 566899999999754
No 389
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=45.95 E-value=14 Score=43.85 Aligned_cols=24 Identities=25% Similarity=0.455 Sum_probs=16.9
Q ss_pred HHhhcCCceEEEeecCCCCCcceee
Q psy7270 83 EHAFEGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 83 ~~~l~G~n~ti~aYGqTgSGKT~Tm 107 (459)
-..+.+.. .|+..|+||||||.-+
T Consensus 83 l~ai~~~~-VviI~GeTGSGKTTql 106 (1294)
T PRK11131 83 LEAIRDHQ-VVIVAGETGSGKTTQL 106 (1294)
T ss_pred HHHHHhCC-eEEEECCCCCCHHHHH
Confidence 34455544 5677799999999854
No 390
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=45.94 E-value=12 Score=42.15 Aligned_cols=28 Identities=21% Similarity=0.323 Sum_probs=20.2
Q ss_pred HHHHhhcCCceEEEeecCCCCCcceeecc
Q psy7270 81 MLEHAFEGYNVCIFAYGQTGAGKSYTMMG 109 (459)
Q Consensus 81 lv~~~l~G~n~ti~aYGqTgSGKT~Tm~G 109 (459)
.|..++.+ +..++-.|..|+||||+|-+
T Consensus 360 Av~~i~~s-~~~~il~G~aGTGKTtll~~ 387 (744)
T TIGR02768 360 AVRHVTGS-GDIAVVVGRAGTGKSTMLKA 387 (744)
T ss_pred HHHHHhcC-CCEEEEEecCCCCHHHHHHH
Confidence 34555555 34567889999999998844
No 391
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=45.93 E-value=8.9 Score=36.02 Aligned_cols=16 Identities=31% Similarity=0.436 Sum_probs=13.2
Q ss_pred EEEeecCCCCCcceee
Q psy7270 92 CIFAYGQTGAGKSYTM 107 (459)
Q Consensus 92 ti~aYGqTgSGKT~Tm 107 (459)
.+.-.|+.|||||.+|
T Consensus 27 i~~ivGpNGaGKSTll 42 (212)
T cd03274 27 FSAIVGPNGSGKSNVI 42 (212)
T ss_pred eEEEECCCCCCHHHHH
Confidence 3456799999999987
No 392
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=45.91 E-value=17 Score=36.71 Aligned_cols=27 Identities=19% Similarity=0.233 Sum_probs=18.6
Q ss_pred HHHHHHhhcCCceEEEeecCCCCCcceee
Q psy7270 79 EEMLEHAFEGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 79 ~plv~~~l~G~n~ti~aYGqTgSGKT~Tm 107 (459)
..++..+.. +.-|+-.|++|+|||...
T Consensus 55 ~~vl~~l~~--~~~ilL~G~pGtGKTtla 81 (327)
T TIGR01650 55 KAICAGFAY--DRRVMVQGYHGTGKSTHI 81 (327)
T ss_pred HHHHHHHhc--CCcEEEEeCCCChHHHHH
Confidence 334444433 445889999999999764
No 393
>PRK06851 hypothetical protein; Provisional
Probab=45.65 E-value=11 Score=38.55 Aligned_cols=27 Identities=30% Similarity=0.470 Sum_probs=22.3
Q ss_pred HHHHhhcCCceEEEeecCCCCCcceee
Q psy7270 81 MLEHAFEGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 81 lv~~~l~G~n~ti~aYGqTgSGKT~Tm 107 (459)
+.+.+++|.+-.++-.|.+|+|||++|
T Consensus 21 ~~~~~~~~~~~~~il~G~pGtGKStl~ 47 (367)
T PRK06851 21 LYDSIIDGANRIFILKGGPGTGKSTLM 47 (367)
T ss_pred hhhhhccccceEEEEECCCCCCHHHHH
Confidence 445566778888999999999999987
No 394
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=45.64 E-value=13 Score=43.22 Aligned_cols=27 Identities=30% Similarity=0.458 Sum_probs=20.9
Q ss_pred HHHHhhcCCceEEEeecCCCCCcceeec
Q psy7270 81 MLEHAFEGYNVCIFAYGQTGAGKSYTMM 108 (459)
Q Consensus 81 lv~~~l~G~n~ti~aYGqTgSGKT~Tm~ 108 (459)
.|..++.|.+.+ +..|..||||||+|-
T Consensus 354 Av~~il~s~~v~-vv~G~AGTGKTT~l~ 380 (988)
T PRK13889 354 ALAHVTDGRDLG-VVVGYAGTGKSAMLG 380 (988)
T ss_pred HHHHHhcCCCeE-EEEeCCCCCHHHHHH
Confidence 566677776654 588999999999863
No 395
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=45.50 E-value=14 Score=43.36 Aligned_cols=26 Identities=42% Similarity=0.760 Sum_probs=20.4
Q ss_pred HHHHHHhhcCCceEEEeecCCCCCccee
Q psy7270 79 EEMLEHAFEGYNVCIFAYGQTGAGKSYT 106 (459)
Q Consensus 79 ~plv~~~l~G~n~ti~aYGqTgSGKT~T 106 (459)
..+|..++.|.++ ++.-+||+|||.+
T Consensus 466 ~eaI~aiL~GrDV--LVimPTGSGKSLc 491 (1195)
T PLN03137 466 REIINATMSGYDV--FVLMPTGGGKSLT 491 (1195)
T ss_pred HHHHHHHHcCCCE--EEEcCCCccHHHH
Confidence 4467788999996 4555999999976
No 396
>KOG0330|consensus
Probab=45.45 E-value=13 Score=38.15 Aligned_cols=25 Identities=28% Similarity=0.426 Sum_probs=18.9
Q ss_pred HHHHhhcCCceEEEeecCCCCCcceee
Q psy7270 81 MLEHAFEGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 81 lv~~~l~G~n~ti~aYGqTgSGKT~Tm 107 (459)
.+..++.|-++..+ -+||||||-+.
T Consensus 91 aiP~~L~g~dvIgl--AeTGSGKT~af 115 (476)
T KOG0330|consen 91 AIPVALGGRDVIGL--AETGSGKTGAF 115 (476)
T ss_pred hcchhhCCCcEEEE--eccCCCchhhh
Confidence 45667889887544 59999999664
No 397
>KOG1514|consensus
Probab=45.10 E-value=28 Score=38.47 Aligned_cols=52 Identities=25% Similarity=0.351 Sum_probs=35.2
Q ss_pred CCCCccCCCCcchhhhhhccCCCc-----ce----eeeeccCCCCCCHHHHHHHHHHHHHhhccccc
Q psy7270 282 KADFIPYRDSVLTWLLRENLGGNS-----KT----AMIAAISPADINYDETLSTLRYADRAKQIVCK 339 (459)
Q Consensus 282 ~~~~ipyRdSkLT~lL~dsLgGns-----~t----~~I~~isp~~~~~~eTlsTL~fa~rak~I~n~ 339 (459)
.-.+-||-..-|-.++...|.|-. -+ -=||.||- ++-..|.++.||.+|.-+
T Consensus 570 Ri~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSG------DaRraldic~RA~Eia~~ 630 (767)
T KOG1514|consen 570 RICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSG------DARRALDICRRAAEIAEE 630 (767)
T ss_pred eeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccc------cHHHHHHHHHHHHHHhhh
Confidence 345778888888888888887751 00 12445554 356788999999988543
No 398
>KOG0977|consensus
Probab=45.04 E-value=2e+02 Score=31.11 Aligned_cols=19 Identities=37% Similarity=0.608 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q psy7270 350 LIRELKEEIQRLRDLLKQE 368 (459)
Q Consensus 350 ~i~~l~~ei~~L~~~l~~~ 368 (459)
.|.+|+.|+..|+..+...
T Consensus 114 ei~kl~~e~~elr~~~~~~ 132 (546)
T KOG0977|consen 114 EITKLREELKELRKKLEKA 132 (546)
T ss_pred HHHHhHHHHHHHHHHHHHH
Confidence 4556666666666666443
No 399
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=45.03 E-value=11 Score=32.67 Aligned_cols=14 Identities=43% Similarity=0.582 Sum_probs=10.9
Q ss_pred EEeecCCCCCccee
Q psy7270 93 IFAYGQTGAGKSYT 106 (459)
Q Consensus 93 i~aYGqTgSGKT~T 106 (459)
|.-.|+||||||.-
T Consensus 2 i~i~GpsGsGKstl 15 (137)
T cd00071 2 IVLSGPSGVGKSTL 15 (137)
T ss_pred EEEECCCCCCHHHH
Confidence 45579999999853
No 400
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=44.91 E-value=9.2 Score=37.51 Aligned_cols=17 Identities=41% Similarity=0.552 Sum_probs=15.0
Q ss_pred eEEEeecCCCCCcceee
Q psy7270 91 VCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 91 ~ti~aYGqTgSGKT~Tm 107 (459)
-.+.-+|++|+|||.++
T Consensus 76 ~~i~~~G~~g~GKTtl~ 92 (270)
T PRK06731 76 QTIALIGPTGVGKTTTL 92 (270)
T ss_pred CEEEEECCCCCcHHHHH
Confidence 47888999999999987
No 401
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=44.88 E-value=12 Score=39.38 Aligned_cols=18 Identities=33% Similarity=0.501 Sum_probs=15.6
Q ss_pred ceEEEeecCCCCCcceee
Q psy7270 90 NVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 90 n~ti~aYGqTgSGKT~Tm 107 (459)
...|+..|.+|||||.|.
T Consensus 99 p~vi~~vG~~GsGKTTta 116 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTC 116 (428)
T ss_pred CEEEEEECCCCCcHHHHH
Confidence 457888999999999986
No 402
>PRK10689 transcription-repair coupling factor; Provisional
Probab=44.81 E-value=18 Score=42.76 Aligned_cols=38 Identities=16% Similarity=0.184 Sum_probs=25.1
Q ss_pred CCCCCHHHHHHHHHHHHHHHhhcCCceEEEeecCCCCCccee
Q psy7270 65 SNFATQAMVYSDIGEEMLEHAFEGYNVCIFAYGQTGAGKSYT 106 (459)
Q Consensus 65 ~~~~sQ~~vy~~~~~plv~~~l~G~n~ti~aYGqTgSGKT~T 106 (459)
.+...|..++..+..+ .-.+...-++++|+||||||-+
T Consensus 600 ~~T~~Q~~aI~~il~d----~~~~~~~d~Ll~a~TGsGKT~v 637 (1147)
T PRK10689 600 ETTPDQAQAINAVLSD----MCQPLAMDRLVCGDVGFGKTEV 637 (1147)
T ss_pred CCCHHHHHHHHHHHHH----hhcCCCCCEEEEcCCCcCHHHH
Confidence 4556777776554333 2234445589999999999964
No 403
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=44.67 E-value=16 Score=36.70 Aligned_cols=30 Identities=20% Similarity=0.359 Sum_probs=22.7
Q ss_pred HHHHHHHHhhcC-Cc--eEEEeecCCCCCccee
Q psy7270 77 IGEEMLEHAFEG-YN--VCIFAYGQTGAGKSYT 106 (459)
Q Consensus 77 ~~~plv~~~l~G-~n--~ti~aYGqTgSGKT~T 106 (459)
++-+-+|.+|.| +. ..+.-||++|||||.-
T Consensus 80 TG~~~LD~lLgGGi~~G~iteI~G~~GsGKTql 112 (313)
T TIGR02238 80 TGSQALDGILGGGIESMSITEVFGEFRCGKTQL 112 (313)
T ss_pred CCCHHHHHHhCCCCcCCeEEEEECCCCCCcCHH
Confidence 345678888885 33 4677999999999964
No 404
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=44.64 E-value=10 Score=39.60 Aligned_cols=17 Identities=35% Similarity=0.472 Sum_probs=14.4
Q ss_pred eEEEeecCCCCCcceee
Q psy7270 91 VCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 91 ~ti~aYGqTgSGKT~Tm 107 (459)
.-|+-+|+||+|||+..
T Consensus 48 ~~ILLiGppG~GKT~lA 64 (441)
T TIGR00390 48 KNILMIGPTGVGKTEIA 64 (441)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 56899999999999753
No 405
>KOG0336|consensus
Probab=44.52 E-value=18 Score=37.29 Aligned_cols=20 Identities=35% Similarity=0.561 Sum_probs=16.0
Q ss_pred hhcCCceEEEeecCCCCCccee
Q psy7270 85 AFEGYNVCIFAYGQTGAGKSYT 106 (459)
Q Consensus 85 ~l~G~n~ti~aYGqTgSGKT~T 106 (459)
+|+|.+.+-.| |||+|||-.
T Consensus 254 ~LQG~DliGVA--QTgtgKtL~ 273 (629)
T KOG0336|consen 254 LLQGIDLIGVA--QTGTGKTLA 273 (629)
T ss_pred eecCcceEEEE--ecCCCcCHH
Confidence 57899986655 999999954
No 406
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=44.39 E-value=2.1e+02 Score=24.64 Aligned_cols=107 Identities=19% Similarity=0.315 Sum_probs=58.5
Q ss_pred HHHHHHHHHHhhcccccceecccchHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHhhhhcCCCCCCCcchhHHHHHH
Q psy7270 323 TLSTLRYADRAKQIVCKAIVNEDANAKLIRELKEEIQRLRDLLKQEGIEVQEASELIMSKMAETPNAGENVDWDFAQVEL 402 (459)
Q Consensus 323 TlsTL~fa~rak~I~n~~~~n~~~~~~~i~~l~~ei~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (459)
..+.-.||+.+=...|.+-.....-...+.+|..-|+.+.++|...- ....+.+... ...++.
T Consensus 7 dFd~~~fan~ll~~~~~~~~~~ld~~~~l~kL~~~i~eld~~i~~~v---~~~~~~LL~q--------------~~~~~~ 69 (132)
T PF10392_consen 7 DFDPVQFANDLLKSTNNNSDSELDISTPLKKLNFDIQELDKRIRSQV---TSNHEDLLSQ--------------ASSIEE 69 (132)
T ss_pred CCCHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHHHHHHHHHHHHH---HhCHHHHHHH--------------HHhHHH
Confidence 34566788877776665544444445567777777777777765421 1111111111 111222
Q ss_pred HHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Q psy7270 403 LEKQGVDLKQEMQQRLRDLEEQYKREKNEADQAFEQ--QRKSSLRRISKQ 450 (459)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~--~~~~~~~~~~~~ 450 (459)
++. .-..+...+..+...++|.+.++-.=+++ .....|+++-.-
T Consensus 70 ~~~----~l~~v~~~v~~L~~s~~RL~~eV~~Py~~~~~~~~~L~rl~~t 115 (132)
T PF10392_consen 70 LES----VLQAVRSSVESLQSSYERLRSEVIEPYEKIQKLTSQLERLHQT 115 (132)
T ss_pred HHH----HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 222 33456677777777777777777666665 334444444433
No 407
>PF14723 SSFA2_C: Sperm-specific antigen 2 C-terminus
Probab=44.31 E-value=1.8e+02 Score=26.38 Aligned_cols=23 Identities=30% Similarity=0.382 Sum_probs=14.5
Q ss_pred HchHHHHHHHHHHHHHHHHHHHH
Q psy7270 406 QGVDLKQEMQQRLRDLEEQYKRE 428 (459)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~ 428 (459)
++..|...+.++++|||.++...
T Consensus 149 QLQsLR~avRqElqELE~QL~DR 171 (179)
T PF14723_consen 149 QLQSLRSAVRQELQELEFQLEDR 171 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666667777777666643
No 408
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=44.29 E-value=13 Score=40.71 Aligned_cols=25 Identities=24% Similarity=0.356 Sum_probs=17.6
Q ss_pred HHHhhcCCceEEEeecCCCCCcceeec
Q psy7270 82 LEHAFEGYNVCIFAYGQTGAGKSYTMM 108 (459)
Q Consensus 82 v~~~l~G~n~ti~aYGqTgSGKT~Tm~ 108 (459)
|..++. +...+-.|..|||||||+.
T Consensus 154 ~~~al~--~~~~vitGgpGTGKTt~v~ 178 (586)
T TIGR01447 154 VALALK--SNFSLITGGPGTGKTTTVA 178 (586)
T ss_pred HHHHhh--CCeEEEEcCCCCCHHHHHH
Confidence 444455 3445668999999999963
No 409
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=44.27 E-value=16 Score=41.12 Aligned_cols=24 Identities=33% Similarity=0.376 Sum_probs=18.3
Q ss_pred HHHHhhcCCceEEEeecCCCCCccee
Q psy7270 81 MLEHAFEGYNVCIFAYGQTGAGKSYT 106 (459)
Q Consensus 81 lv~~~l~G~n~ti~aYGqTgSGKT~T 106 (459)
.+..+++|.|..+ --+||||||.+
T Consensus 44 ai~~il~G~nvvv--~apTGSGKTla 67 (742)
T TIGR03817 44 AAELAHAGRHVVV--ATGTASGKSLA 67 (742)
T ss_pred HHHHHHCCCCEEE--ECCCCCcHHHH
Confidence 3456689999655 45899999976
No 410
>KOG2035|consensus
Probab=44.21 E-value=34 Score=33.76 Aligned_cols=38 Identities=26% Similarity=0.456 Sum_probs=23.4
Q ss_pred HHHHHHhhc-CCceEEEeecCCCCCcceeeccCCCCCCCCChHHHHHHHHHH
Q psy7270 79 EEMLEHAFE-GYNVCIFAYGQTGAGKSYTMMGRQEVEGEEGIIPMICQDLFK 129 (459)
Q Consensus 79 ~plv~~~l~-G~n~ti~aYGqTgSGKT~Tm~G~~~~~~~~Giipr~~~~lF~ 129 (459)
.+.+.++.. |-=--++.||++|+||-. .+-..+++||-
T Consensus 22 ~~~Lksl~~~~d~PHll~yGPSGaGKKT-------------rimclL~elYG 60 (351)
T KOG2035|consen 22 ANLLKSLSSTGDFPHLLVYGPSGAGKKT-------------RIMCLLRELYG 60 (351)
T ss_pred HHHHHHhcccCCCCeEEEECCCCCCchh-------------hHHHHHHHHhC
Confidence 344444443 533457899999999843 33446677775
No 411
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=43.95 E-value=22 Score=40.33 Aligned_cols=39 Identities=21% Similarity=0.189 Sum_probs=22.8
Q ss_pred CHHHHHHHHHHHHHHHhhcC-Cc-eEEEeecCCCCCcceee
Q psy7270 69 TQAMVYSDIGEEMLEHAFEG-YN-VCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 69 sQ~~vy~~~~~plv~~~l~G-~n-~ti~aYGqTgSGKT~Tm 107 (459)
.|+++-+.+..-+....+.| .. ..++-||++|+|||+..
T Consensus 324 G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lA 364 (775)
T TIGR00763 324 GLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLG 364 (775)
T ss_pred ChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHH
Confidence 45666666543222222222 22 25778999999999764
No 412
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=43.84 E-value=13 Score=28.08 Aligned_cols=15 Identities=40% Similarity=0.516 Sum_probs=11.4
Q ss_pred EEeecCCCCCcceee
Q psy7270 93 IFAYGQTGAGKSYTM 107 (459)
Q Consensus 93 i~aYGqTgSGKT~Tm 107 (459)
|+-.|..|||||..+
T Consensus 2 i~i~G~~gsGKst~~ 16 (69)
T cd02019 2 IAITGGSGSGKSTVA 16 (69)
T ss_pred EEEECCCCCCHHHHH
Confidence 445699999997654
No 413
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=43.79 E-value=10 Score=42.06 Aligned_cols=20 Identities=15% Similarity=0.247 Sum_probs=16.6
Q ss_pred ceEEEeecCCCCCcceeecc
Q psy7270 90 NVCIFAYGQTGAGKSYTMMG 109 (459)
Q Consensus 90 n~ti~aYGqTgSGKT~Tm~G 109 (459)
.+-++..|..|||||.||..
T Consensus 14 ~~~~~V~Ag~GSGKT~~L~~ 33 (664)
T TIGR01074 14 TGPCLVLAGAGSGKTRVITN 33 (664)
T ss_pred CCCEEEEecCCCCHHHHHHH
Confidence 34578889999999999855
No 414
>PRK00279 adk adenylate kinase; Reviewed
Probab=43.77 E-value=11 Score=35.28 Aligned_cols=15 Identities=33% Similarity=0.539 Sum_probs=12.8
Q ss_pred EEEeecCCCCCccee
Q psy7270 92 CIFAYGQTGAGKSYT 106 (459)
Q Consensus 92 ti~aYGqTgSGKT~T 106 (459)
.|+.+|+.|||||..
T Consensus 2 ~I~v~G~pGsGKsT~ 16 (215)
T PRK00279 2 RLILLGPPGAGKGTQ 16 (215)
T ss_pred EEEEECCCCCCHHHH
Confidence 378899999999964
No 415
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=43.71 E-value=12 Score=35.99 Aligned_cols=16 Identities=31% Similarity=0.567 Sum_probs=13.6
Q ss_pred EEEeecCCCCCcceee
Q psy7270 92 CIFAYGQTGAGKSYTM 107 (459)
Q Consensus 92 ti~aYGqTgSGKT~Tm 107 (459)
.++.+|++|||||.-+
T Consensus 32 ~~~i~G~nGsGKSTL~ 47 (235)
T COG1122 32 RVLLIGPNGSGKSTLL 47 (235)
T ss_pred EEEEECCCCCCHHHHH
Confidence 6788999999999754
No 416
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=43.64 E-value=10 Score=35.44 Aligned_cols=18 Identities=44% Similarity=0.573 Sum_probs=14.3
Q ss_pred ceEEEeecCCCCCcceee
Q psy7270 90 NVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 90 n~ti~aYGqTgSGKT~Tm 107 (459)
+..+.-.|++|||||..|
T Consensus 28 ~~~~~i~G~NGsGKSTll 45 (213)
T cd03279 28 NGLFLICGPTGAGKSTIL 45 (213)
T ss_pred cCEEEEECCCCCCHHHHH
Confidence 345667899999999765
No 417
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=43.42 E-value=21 Score=38.36 Aligned_cols=36 Identities=14% Similarity=0.123 Sum_probs=23.5
Q ss_pred CCHHHHHHHHHHHHHHHhhcCC-ceEEEeecCCCCCcceee
Q psy7270 68 ATQAMVYSDIGEEMLEHAFEGY-NVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 68 ~sQ~~vy~~~~~plv~~~l~G~-n~ti~aYGqTgSGKT~Tm 107 (459)
..|+.+... +-..+..|- ...++-||+.|+|||.+.
T Consensus 24 iGq~~vv~~----L~~ai~~~ri~~a~Lf~Gp~G~GKTT~A 60 (507)
T PRK06645 24 QGQEVLVKV----LSYTILNDRLAGGYLLTGIRGVGKTTSA 60 (507)
T ss_pred cCcHHHHHH----HHHHHHcCCCCceEEEECCCCCCHHHHH
Confidence 356665543 223344454 357899999999999874
No 418
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=43.32 E-value=16 Score=41.99 Aligned_cols=13 Identities=38% Similarity=0.680 Sum_probs=11.2
Q ss_pred CCCCCcceeeccC
Q psy7270 98 QTGAGKSYTMMGR 110 (459)
Q Consensus 98 qTgSGKT~Tm~G~ 110 (459)
.|||||||||.+.
T Consensus 67 ~TGtGKT~~~~~~ 79 (986)
T PRK15483 67 ETGTGKTYVYTRL 79 (986)
T ss_pred CCCCCHHHHHHHH
Confidence 7999999988664
No 419
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=43.19 E-value=10 Score=33.90 Aligned_cols=15 Identities=40% Similarity=0.592 Sum_probs=12.4
Q ss_pred EEeecCCCCCcceee
Q psy7270 93 IFAYGQTGAGKSYTM 107 (459)
Q Consensus 93 i~aYGqTgSGKT~Tm 107 (459)
++-.|++|+|||.+.
T Consensus 3 ~~~~G~~G~GKTt~~ 17 (173)
T cd03115 3 ILLVGLQGVGKTTTA 17 (173)
T ss_pred EEEECCCCCCHHHHH
Confidence 456699999999875
No 420
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=43.19 E-value=18 Score=38.65 Aligned_cols=27 Identities=22% Similarity=0.370 Sum_probs=21.5
Q ss_pred HHHHHHhhcC---CceEEEeecCCCCCcce
Q psy7270 79 EEMLEHAFEG---YNVCIFAYGQTGAGKSY 105 (459)
Q Consensus 79 ~plv~~~l~G---~n~ti~aYGqTgSGKT~ 105 (459)
-|=+|.++.| .+.+++-+|++|||||.
T Consensus 7 I~gLD~il~GGlp~g~~~Li~G~pGsGKT~ 36 (484)
T TIGR02655 7 IEGFDDISHGGLPIGRSTLVSGTSGTGKTL 36 (484)
T ss_pred chhHHHhcCCCCCCCeEEEEEcCCCCCHHH
Confidence 3556777874 46889999999999984
No 421
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=43.14 E-value=15 Score=37.48 Aligned_cols=34 Identities=26% Similarity=0.399 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHhhcCCceEEEeecCCCCCcceeec
Q psy7270 74 YSDIGEEMLEHAFEGYNVCIFAYGQTGAGKSYTMM 108 (459)
Q Consensus 74 y~~~~~plv~~~l~G~n~ti~aYGqTgSGKT~Tm~ 108 (459)
|...+.+.++......+- +.-.|.||||||++|.
T Consensus 126 wr~~~~~~~~~~~~~~~~-ivl~G~TGsGKT~iL~ 159 (345)
T PRK11784 126 YRRFVIDTLEEAPAQFPL-VVLGGNTGSGKTELLQ 159 (345)
T ss_pred HHHhhHHHHhhhcccCce-EecCCCCcccHHHHHH
Confidence 444444555544344444 4577899999998883
No 422
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=42.97 E-value=17 Score=38.86 Aligned_cols=28 Identities=25% Similarity=0.377 Sum_probs=22.0
Q ss_pred HHHHHHHhhcC---CceEEEeecCCCCCcce
Q psy7270 78 GEEMLEHAFEG---YNVCIFAYGQTGAGKSY 105 (459)
Q Consensus 78 ~~plv~~~l~G---~n~ti~aYGqTgSGKT~ 105 (459)
+-|-++.++.| ....++-+|.+|||||.
T Consensus 16 GI~~LD~~l~GG~p~Gs~~li~G~pGsGKT~ 46 (509)
T PRK09302 16 GIEGFDDITHGGLPKGRPTLVSGTAGTGKTL 46 (509)
T ss_pred CchhHHHhhcCCCCCCcEEEEEeCCCCCHHH
Confidence 34567788864 45789999999999985
No 423
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=42.89 E-value=12 Score=34.74 Aligned_cols=17 Identities=29% Similarity=0.384 Sum_probs=13.1
Q ss_pred eEEEeecCCCCCcceee
Q psy7270 91 VCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 91 ~ti~aYGqTgSGKT~Tm 107 (459)
..|.-.|++|||||+.+
T Consensus 7 ~vi~I~G~sGsGKSTl~ 23 (207)
T TIGR00235 7 IIIGIGGGSGSGKTTVA 23 (207)
T ss_pred EEEEEECCCCCCHHHHH
Confidence 34667899999999643
No 424
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=42.87 E-value=17 Score=33.15 Aligned_cols=25 Identities=20% Similarity=0.246 Sum_probs=18.4
Q ss_pred HHhhcC-CceEEEeecCCCCCcceee
Q psy7270 83 EHAFEG-YNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 83 ~~~l~G-~n~ti~aYGqTgSGKT~Tm 107 (459)
..+-.| ...+++-||+.|+|||...
T Consensus 6 ~~i~~~~~~~~~L~~G~~G~gkt~~a 31 (188)
T TIGR00678 6 RALEKGRLAHAYLFAGPEGVGKELLA 31 (188)
T ss_pred HHHHcCCCCeEEEEECCCCCCHHHHH
Confidence 333455 5567888999999999765
No 425
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=42.80 E-value=17 Score=36.74 Aligned_cols=31 Identities=32% Similarity=0.461 Sum_probs=23.8
Q ss_pred HHHHHHHHHhhc--CCc--eEEEeecCCCCCccee
Q psy7270 76 DIGEEMLEHAFE--GYN--VCIFAYGQTGAGKSYT 106 (459)
Q Consensus 76 ~~~~plv~~~l~--G~n--~ti~aYGqTgSGKT~T 106 (459)
.++-+-++.+|. |+. ..+.-||++|||||.-
T Consensus 37 sTGi~~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtL 71 (325)
T cd00983 37 PTGSLSLDIALGIGGYPKGRIIEIYGPESSGKTTL 71 (325)
T ss_pred cCCCHHHHHHhcCCCccCCeEEEEECCCCCCHHHH
Confidence 345678888887 554 4678999999999954
No 426
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=42.73 E-value=12 Score=42.13 Aligned_cols=17 Identities=29% Similarity=0.608 Sum_probs=14.6
Q ss_pred eEEEeecCCCCCcceee
Q psy7270 91 VCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 91 ~ti~aYGqTgSGKT~Tm 107 (459)
-.|+-||++|||||+.+
T Consensus 213 ~giLL~GppGtGKT~la 229 (733)
T TIGR01243 213 KGVLLYGPPGTGKTLLA 229 (733)
T ss_pred ceEEEECCCCCChHHHH
Confidence 46899999999999764
No 427
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=42.62 E-value=16 Score=37.10 Aligned_cols=29 Identities=24% Similarity=0.440 Sum_probs=22.5
Q ss_pred HHHHHHHHhhcC-C--ceEEEeecCCCCCcce
Q psy7270 77 IGEEMLEHAFEG-Y--NVCIFAYGQTGAGKSY 105 (459)
Q Consensus 77 ~~~plv~~~l~G-~--n~ti~aYGqTgSGKT~ 105 (459)
++-+-+|.+|.| + ...+.-||++|||||.
T Consensus 110 TG~~~LD~lLgGGi~~G~ItEI~G~~GsGKTq 141 (344)
T PLN03187 110 TGSQALDELLGGGIETRCITEAFGEFRSGKTQ 141 (344)
T ss_pred CCcHhHHhhcCCCCCCCeEEEEecCCCCChhH
Confidence 456778888885 2 3566799999999996
No 428
>CHL00176 ftsH cell division protein; Validated
Probab=42.50 E-value=9.7 Score=42.07 Aligned_cols=16 Identities=25% Similarity=0.497 Sum_probs=14.3
Q ss_pred EEEeecCCCCCcceee
Q psy7270 92 CIFAYGQTGAGKSYTM 107 (459)
Q Consensus 92 ti~aYGqTgSGKT~Tm 107 (459)
.|+-||++|+|||+..
T Consensus 218 gVLL~GPpGTGKT~LA 233 (638)
T CHL00176 218 GVLLVGPPGTGKTLLA 233 (638)
T ss_pred eEEEECCCCCCHHHHH
Confidence 5899999999999874
No 429
>KOG0161|consensus
Probab=42.36 E-value=2.9e+02 Score=34.69 Aligned_cols=19 Identities=37% Similarity=0.564 Sum_probs=14.4
Q ss_pred cCCceEEEeecCCCCCcce
Q psy7270 87 EGYNVCIFAYGQTGAGKSY 105 (459)
Q Consensus 87 ~G~n~ti~aYGqTgSGKT~ 105 (459)
++-|-+|++.|-+|+|||-
T Consensus 165 ~renQSiLiTGESGAGKTe 183 (1930)
T KOG0161|consen 165 DRENQSILITGESGAGKTE 183 (1930)
T ss_pred cCCCceEeeecCCCCCcch
Confidence 5777777888888888874
No 430
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=42.33 E-value=2.3e+02 Score=24.59 Aligned_cols=35 Identities=40% Similarity=0.547 Sum_probs=23.6
Q ss_pred ccccceecccchHHHHHHHHHHHHHHHHHHHhhch
Q psy7270 336 IVCKAIVNEDANAKLIRELKEEIQRLRDLLKQEGI 370 (459)
Q Consensus 336 I~n~~~~n~~~~~~~i~~l~~ei~~L~~~l~~~~~ 370 (459)
|.-+.++-+.-...+.++|.+.+..+..+|++...
T Consensus 7 V~VK~ivTe~~K~~l~~~l~~~i~~~d~el~QLef 41 (131)
T PF11068_consen 7 VTVKAIVTEKWKEELLQELQEQIQQLDQELQQLEF 41 (131)
T ss_dssp EEEEEE--HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455666667777888888888888887766443
No 431
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=42.33 E-value=12 Score=34.19 Aligned_cols=13 Identities=54% Similarity=0.790 Sum_probs=11.1
Q ss_pred EEeecCCCCCcce
Q psy7270 93 IFAYGQTGAGKSY 105 (459)
Q Consensus 93 i~aYGqTgSGKT~ 105 (459)
|+-.|++|||||+
T Consensus 3 iiilG~pGaGK~T 15 (178)
T COG0563 3 ILILGPPGAGKST 15 (178)
T ss_pred EEEECCCCCCHHH
Confidence 6778999999975
No 432
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=42.27 E-value=11 Score=35.18 Aligned_cols=16 Identities=38% Similarity=0.586 Sum_probs=14.1
Q ss_pred EEEeecCCCCCcceee
Q psy7270 92 CIFAYGQTGAGKSYTM 107 (459)
Q Consensus 92 ti~aYGqTgSGKT~Tm 107 (459)
+++-+|++|||||..+
T Consensus 24 ~~~i~G~NGsGKTTLl 39 (204)
T cd03240 24 LTLIVGQNGAGKTTII 39 (204)
T ss_pred eEEEECCCCCCHHHHH
Confidence 7788999999999765
No 433
>PRK09354 recA recombinase A; Provisional
Probab=42.13 E-value=18 Score=36.82 Aligned_cols=31 Identities=26% Similarity=0.376 Sum_probs=23.9
Q ss_pred HHHHHHHHhhc--CCc--eEEEeecCCCCCcceee
Q psy7270 77 IGEEMLEHAFE--GYN--VCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 77 ~~~plv~~~l~--G~n--~ti~aYGqTgSGKT~Tm 107 (459)
++-|-++.+|. |+- ..+.-||++|||||.-.
T Consensus 43 TGi~~LD~~LG~GGip~G~IteI~G~~GsGKTtLa 77 (349)
T PRK09354 43 TGSLALDIALGIGGLPRGRIVEIYGPESSGKTTLA 77 (349)
T ss_pred CCcHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHH
Confidence 45678888887 443 47889999999998643
No 434
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=42.03 E-value=14 Score=36.98 Aligned_cols=16 Identities=31% Similarity=0.360 Sum_probs=13.5
Q ss_pred EEEeecCCCCCcceee
Q psy7270 92 CIFAYGQTGAGKSYTM 107 (459)
Q Consensus 92 ti~aYGqTgSGKT~Tm 107 (459)
.|+-+|+|+||||...
T Consensus 5 ~i~I~GPTAsGKT~la 20 (308)
T COG0324 5 LIVIAGPTASGKTALA 20 (308)
T ss_pred EEEEECCCCcCHHHHH
Confidence 4788999999999764
No 435
>PF03195 DUF260: Protein of unknown function DUF260; InterPro: IPR004883 The lateral organ boundaries (LOB) gene is expressed at the adaxial base of initiating lateral organs and encodes a plant-specific protein of unknown function. The N-terminal one half of the LOB protein contains a conserved approximately 100-amino acid domain (the LOB domain) that is present in 42 other Arabidopsis thaliana proteins and in proteins from a variety of other plant species. Genes encoding LOB domain (LBD) proteins are expressed in a variety of temporal- and tissue-specific patterns, suggesting that they may function in diverse processes [] The LOB domain contains conserved blocks of amino acids that identify the LBD gene family. In particular, a conserved C-x(2)-C-x(6)-C-x(3)-C motif, which is defining feature of the LOB domain, is present in all LBD proteins. It is possible that this motif forms a new zinc finger [].
Probab=41.99 E-value=32 Score=28.44 Aligned_cols=78 Identities=15% Similarity=0.313 Sum_probs=56.8
Q ss_pred CCccCCCCcchhhhhhccCCCcceeeeeccCCCCCCHHHHHHHHHHHHHhhcccccceecccchHHHHHHHHHHHHHHHH
Q psy7270 284 DFIPYRDSVLTWLLRENLGGNSKTAMIAAISPADINYDETLSTLRYADRAKQIVCKAIVNEDANAKLIRELKEEIQRLRD 363 (459)
Q Consensus 284 ~~ipyRdSkLT~lL~dsLgGns~t~~I~~isp~~~~~~eTlsTL~fa~rak~I~n~~~~n~~~~~~~i~~l~~ei~~L~~ 363 (459)
++.|..+..-+......||-..-+-|+-.+.|. .-+++++||-|-+.++.. .|+- --...|..|+.++..++.
T Consensus 20 PyFP~~~~~~F~~vhkvFG~sni~k~L~~~~~~--~R~~a~~Sl~yEA~~R~~--dPv~---Gc~G~i~~L~~ql~~~~~ 92 (101)
T PF03195_consen 20 PYFPADQPQRFANVHKVFGVSNISKMLQELPPE--QREDAMRSLVYEANARAR--DPVY---GCVGIISQLQQQLQQLQA 92 (101)
T ss_pred CCCChhHHHHHHHHHHHHchhHHHHHHHhCCcc--chhhHHHHHHHHHHhhcc--CCCc---chHHHHHHHHHHHHHHHH
Confidence 344556666666777777777777788888765 479999999999998854 1221 235678889999999988
Q ss_pred HHHhh
Q psy7270 364 LLKQE 368 (459)
Q Consensus 364 ~l~~~ 368 (459)
+|...
T Consensus 93 el~~~ 97 (101)
T PF03195_consen 93 ELALV 97 (101)
T ss_pred HHHHH
Confidence 88653
No 436
>PTZ00301 uridine kinase; Provisional
Probab=41.92 E-value=9 Score=36.07 Aligned_cols=15 Identities=40% Similarity=0.426 Sum_probs=11.3
Q ss_pred EEeecCCCCCcceee
Q psy7270 93 IFAYGQTGAGKSYTM 107 (459)
Q Consensus 93 i~aYGqTgSGKT~Tm 107 (459)
|---|++|||||+.-
T Consensus 6 IgIaG~SgSGKTTla 20 (210)
T PTZ00301 6 IGISGASGSGKSSLS 20 (210)
T ss_pred EEEECCCcCCHHHHH
Confidence 344689999998753
No 437
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=41.88 E-value=14 Score=33.99 Aligned_cols=15 Identities=27% Similarity=0.561 Sum_probs=11.4
Q ss_pred eEEEeecCCCCCcce
Q psy7270 91 VCIFAYGQTGAGKSY 105 (459)
Q Consensus 91 ~ti~aYGqTgSGKT~ 105 (459)
-+|+-.|+.|||||.
T Consensus 4 ~~vlL~Gps~SGKTa 18 (181)
T PF09439_consen 4 PTVLLVGPSGSGKTA 18 (181)
T ss_dssp -EEEEE-STTSSHHH
T ss_pred ceEEEEcCCCCCHHH
Confidence 468889999999985
No 438
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=41.78 E-value=24 Score=40.45 Aligned_cols=38 Identities=18% Similarity=0.255 Sum_probs=24.8
Q ss_pred CHHHHHHHHHHHHHHHhhcCC------ceEEEeecCCCCCcceee
Q psy7270 69 TQAMVYSDIGEEMLEHAFEGY------NVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 69 sQ~~vy~~~~~plv~~~l~G~------n~ti~aYGqTgSGKT~Tm 107 (459)
.|...-+.+.. .|..+..|. .++++-+|+||+|||++.
T Consensus 569 GQ~~av~~v~~-~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA 612 (852)
T TIGR03346 569 GQDEAVEAVSD-AIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELA 612 (852)
T ss_pred CChHHHHHHHH-HHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHH
Confidence 45666555543 333444443 367888999999999864
No 439
>PRK13853 type IV secretion system protein VirB4; Provisional
Probab=41.77 E-value=9.3 Score=43.37 Aligned_cols=18 Identities=28% Similarity=0.357 Sum_probs=15.1
Q ss_pred ceEEEeecCCCCCcceee
Q psy7270 90 NVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 90 n~ti~aYGqTgSGKT~Tm 107 (459)
.+-.+.+|+||||||+.+
T Consensus 426 ~g~~~I~G~tGsGKS~l~ 443 (789)
T PRK13853 426 VGMTAIFGPIGRGKTTLM 443 (789)
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 345788999999999986
No 440
>PRK13721 conjugal transfer ATP-binding protein TraC; Provisional
Probab=41.77 E-value=10 Score=43.43 Aligned_cols=18 Identities=33% Similarity=0.488 Sum_probs=15.1
Q ss_pred ceEEEeecCCCCCcceee
Q psy7270 90 NVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 90 n~ti~aYGqTgSGKT~Tm 107 (459)
|.-++..|.||||||++|
T Consensus 449 N~N~~I~G~sGsGKS~l~ 466 (844)
T PRK13721 449 NYNMAVCGTSGAGKTGLI 466 (844)
T ss_pred cccEEEEcCCCCCHHHHH
Confidence 445778899999999987
No 441
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=41.74 E-value=17 Score=32.72 Aligned_cols=26 Identities=35% Similarity=0.507 Sum_probs=19.1
Q ss_pred HHHHHhhcCCceEEEeecCCCCCcceee
Q psy7270 80 EMLEHAFEGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 80 plv~~~l~G~n~ti~aYGqTgSGKT~Tm 107 (459)
+-+...+.| -+++-.|++|.|||..+
T Consensus 27 ~~l~~~l~~--k~~vl~G~SGvGKSSLi 52 (161)
T PF03193_consen 27 EELKELLKG--KTSVLLGQSGVGKSSLI 52 (161)
T ss_dssp HHHHHHHTT--SEEEEECSTTSSHHHHH
T ss_pred HHHHHHhcC--CEEEEECCCCCCHHHHH
Confidence 445677778 45666799999998654
No 442
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=41.73 E-value=14 Score=35.79 Aligned_cols=16 Identities=31% Similarity=0.316 Sum_probs=13.8
Q ss_pred ceEEEeecCCCCCcce
Q psy7270 90 NVCIFAYGQTGAGKSY 105 (459)
Q Consensus 90 n~ti~aYGqTgSGKT~ 105 (459)
..+++-+|++|+|||.
T Consensus 36 gs~~lI~G~pGtGKT~ 51 (259)
T TIGR03878 36 YSVINITGVSDTGKSL 51 (259)
T ss_pred CcEEEEEcCCCCCHHH
Confidence 4678899999999985
No 443
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=41.71 E-value=22 Score=35.53 Aligned_cols=29 Identities=24% Similarity=0.391 Sum_probs=21.2
Q ss_pred HHHHHHhhcC-C--ceEEEeecCCCCCcceee
Q psy7270 79 EEMLEHAFEG-Y--NVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 79 ~plv~~~l~G-~--n~ti~aYGqTgSGKT~Tm 107 (459)
.+-++.++.| + ...+.-||++|||||...
T Consensus 88 ~~~lD~~l~GGi~~g~vtei~G~~GsGKT~l~ 119 (317)
T PRK04301 88 SKELDELLGGGIETQSITEFYGEFGSGKTQIC 119 (317)
T ss_pred CHHHHHHhcCCccCCcEEEEECCCCCCHhHHH
Confidence 3556777764 3 456788999999999643
No 444
>KOG0987|consensus
Probab=41.69 E-value=26 Score=38.00 Aligned_cols=35 Identities=34% Similarity=0.597 Sum_probs=26.2
Q ss_pred CCHHHHHHHHHHHHHHHhhcCCceEEEeecCCCCCcceee
Q psy7270 68 ATQAMVYSDIGEEMLEHAFEGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 68 ~sQ~~vy~~~~~plv~~~l~G~n~ti~aYGqTgSGKT~Tm 107 (459)
..|..||+. ++..+.+-.-..+| ||.-|+||||-.
T Consensus 120 ~eqk~v~d~----~~~~v~~~~g~~ff-~g~~gtgKt~l~ 154 (540)
T KOG0987|consen 120 PEQKRVYDA----ILEAVENNLGGVFF-YGFGGTGKTYLL 154 (540)
T ss_pred HHHHHHHHH----HHHHHhccccceee-eccCCccceeeH
Confidence 468888873 34556666667777 999999999853
No 445
>PRK02496 adk adenylate kinase; Provisional
Probab=41.63 E-value=12 Score=33.83 Aligned_cols=15 Identities=33% Similarity=0.547 Sum_probs=12.4
Q ss_pred EEeecCCCCCcceee
Q psy7270 93 IFAYGQTGAGKSYTM 107 (459)
Q Consensus 93 i~aYGqTgSGKT~Tm 107 (459)
|+-.|+.|||||...
T Consensus 4 i~i~G~pGsGKst~a 18 (184)
T PRK02496 4 LIFLGPPGAGKGTQA 18 (184)
T ss_pred EEEECCCCCCHHHHH
Confidence 677899999998753
No 446
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=41.49 E-value=13 Score=37.20 Aligned_cols=15 Identities=33% Similarity=0.457 Sum_probs=12.7
Q ss_pred EEEeecCCCCCccee
Q psy7270 92 CIFAYGQTGAGKSYT 106 (459)
Q Consensus 92 ti~aYGqTgSGKT~T 106 (459)
.|+..|+||||||.-
T Consensus 6 ~i~i~GptgsGKt~l 20 (307)
T PRK00091 6 VIVIVGPTASGKTAL 20 (307)
T ss_pred EEEEECCCCcCHHHH
Confidence 578899999999853
No 447
>PLN02200 adenylate kinase family protein
Probab=41.40 E-value=12 Score=35.68 Aligned_cols=16 Identities=31% Similarity=0.567 Sum_probs=13.8
Q ss_pred eEEEeecCCCCCccee
Q psy7270 91 VCIFAYGQTGAGKSYT 106 (459)
Q Consensus 91 ~ti~aYGqTgSGKT~T 106 (459)
..|+..|++|||||+-
T Consensus 44 ~ii~I~G~PGSGKsT~ 59 (234)
T PLN02200 44 FITFVLGGPGSGKGTQ 59 (234)
T ss_pred EEEEEECCCCCCHHHH
Confidence 4689999999999875
No 448
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=41.40 E-value=20 Score=32.22 Aligned_cols=28 Identities=21% Similarity=0.348 Sum_probs=21.6
Q ss_pred HHHHHhhc-CCceEEEeecCCCCCcceee
Q psy7270 80 EMLEHAFE-GYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 80 plv~~~l~-G~n~ti~aYGqTgSGKT~Tm 107 (459)
.++..+.. .-...|+..|..|||||.-+
T Consensus 3 ~~~~~~~~~~~~~~ililGl~~sGKTtll 31 (175)
T PF00025_consen 3 SVLSKLKSKKKEIKILILGLDGSGKTTLL 31 (175)
T ss_dssp HHHHHCTTTTSEEEEEEEESTTSSHHHHH
T ss_pred HHHHHhcccCcEEEEEEECCCccchHHHH
Confidence 35556665 77789999999999999543
No 449
>PRK14528 adenylate kinase; Provisional
Probab=41.31 E-value=13 Score=34.11 Aligned_cols=16 Identities=38% Similarity=0.497 Sum_probs=13.2
Q ss_pred EEEeecCCCCCcceee
Q psy7270 92 CIFAYGQTGAGKSYTM 107 (459)
Q Consensus 92 ti~aYGqTgSGKT~Tm 107 (459)
.|+..|++|||||+..
T Consensus 3 ~i~i~G~pGsGKtt~a 18 (186)
T PRK14528 3 NIIFMGPPGAGKGTQA 18 (186)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3788999999998753
No 450
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=41.29 E-value=13 Score=41.94 Aligned_cols=17 Identities=24% Similarity=0.556 Sum_probs=14.1
Q ss_pred eEEEeecCCCCCcceee
Q psy7270 91 VCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 91 ~ti~aYGqTgSGKT~Tm 107 (459)
..|+-||++|+|||+..
T Consensus 488 ~giLL~GppGtGKT~la 504 (733)
T TIGR01243 488 KGVLLFGPPGTGKTLLA 504 (733)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 35788999999999764
No 451
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=41.26 E-value=2.8e+02 Score=31.58 Aligned_cols=11 Identities=18% Similarity=0.428 Sum_probs=5.6
Q ss_pred cCCCCCcceee
Q psy7270 97 GQTGAGKSYTM 107 (459)
Q Consensus 97 GqTgSGKT~Tm 107 (459)
+++.||.|.-+
T Consensus 214 ~~s~sg~t~y~ 224 (782)
T PRK00409 214 DQSSSGATLYI 224 (782)
T ss_pred eEECCCCEEEE
Confidence 45555555444
No 452
>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional
Probab=41.15 E-value=95 Score=32.38 Aligned_cols=40 Identities=25% Similarity=0.283 Sum_probs=30.3
Q ss_pred HHHHHHHHhhcccccceecccchHHHHHHHHHHHHHHHHH
Q psy7270 325 STLRYADRAKQIVCKAIVNEDANAKLIRELKEEIQRLRDL 364 (459)
Q Consensus 325 sTL~fa~rak~I~n~~~~n~~~~~~~i~~l~~ei~~L~~~ 364 (459)
-.|+|.++.+-++++|..+.-.-..-|.+|...|+.|+..
T Consensus 56 ~~~~~~~~~~~~~~~~~~~~l~fe~pi~ele~ki~el~~~ 95 (431)
T PLN03230 56 GALKILNRFKPLKNKPKPVTLPFEKPIVDLENRIDEVREL 95 (431)
T ss_pred cHHHHHHhcCCCCCCCCCCccchhhHHHHHHHHHHHHHhh
Confidence 4589999999999999977655555567777777777654
No 453
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=41.07 E-value=25 Score=37.39 Aligned_cols=35 Identities=17% Similarity=0.277 Sum_probs=23.2
Q ss_pred CHHHHHHHHHHHHHHHhhcCC-ceEEEeecCCCCCcceee
Q psy7270 69 TQAMVYSDIGEEMLEHAFEGY-NVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 69 sQ~~vy~~~~~plv~~~l~G~-n~ti~aYGqTgSGKT~Tm 107 (459)
.|+.+... +...+-.|. ...++-||+.|+|||.+.
T Consensus 22 GQe~iv~~----L~~~i~~~ri~ha~Lf~GP~GtGKTTlA 57 (484)
T PRK14956 22 HQDLAIGA----LQNALKSGKIGHAYIFFGPRGVGKTTIA 57 (484)
T ss_pred ChHHHHHH----HHHHHHcCCCCeEEEEECCCCCCHHHHH
Confidence 56666543 333334444 346899999999999764
No 454
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=41.03 E-value=13 Score=33.56 Aligned_cols=16 Identities=38% Similarity=0.418 Sum_probs=13.4
Q ss_pred EEEeecCCCCCcceee
Q psy7270 92 CIFAYGQTGAGKSYTM 107 (459)
Q Consensus 92 ti~aYGqTgSGKT~Tm 107 (459)
.|+..|++|||||...
T Consensus 4 ~i~l~G~~gsGKst~a 19 (175)
T cd00227 4 IIILNGGSSAGKSSIA 19 (175)
T ss_pred EEEEECCCCCCHHHHH
Confidence 5788999999998653
No 455
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=40.97 E-value=13 Score=36.03 Aligned_cols=37 Identities=30% Similarity=0.338 Sum_probs=23.6
Q ss_pred CCHHHHHHHHHHHHHHHhhcCCceEEEeecCCCCCcceee
Q psy7270 68 ATQAMVYSDIGEEMLEHAFEGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 68 ~sQ~~vy~~~~~plv~~~l~G~n~ti~aYGqTgSGKT~Tm 107 (459)
++|....+..+ .+-+ ..-...+|+..|.||+|||.++
T Consensus 12 ~~~~~~~~~~~-~~~~--~~~~~~~IllvG~tGvGKSSli 48 (249)
T cd01853 12 AAQTKALELEA-KGKE--ELDFSLTILVLGKTGVGKSSTI 48 (249)
T ss_pred HHHHHHHHHHH-Hhhh--hccCCeEEEEECCCCCcHHHHH
Confidence 56655544432 2222 2345568889999999998775
No 456
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=40.94 E-value=13 Score=37.54 Aligned_cols=14 Identities=29% Similarity=0.378 Sum_probs=12.0
Q ss_pred EEeecCCCCCccee
Q psy7270 93 IFAYGQTGAGKSYT 106 (459)
Q Consensus 93 i~aYGqTgSGKT~T 106 (459)
|+..++||||||.+
T Consensus 2 vvi~apTGsGKT~~ 15 (358)
T TIGR01587 2 LVIEAPTGYGKTEA 15 (358)
T ss_pred EEEEeCCCCCHHHH
Confidence 56789999999975
No 457
>PRK13873 conjugal transfer ATPase TrbE; Provisional
Probab=40.92 E-value=12 Score=42.66 Aligned_cols=16 Identities=44% Similarity=0.613 Sum_probs=13.8
Q ss_pred EEEeecCCCCCcceee
Q psy7270 92 CIFAYGQTGAGKSYTM 107 (459)
Q Consensus 92 ti~aYGqTgSGKT~Tm 107 (459)
-.+..|+||||||+.|
T Consensus 443 n~~I~G~tGsGKS~l~ 458 (811)
T PRK13873 443 HTLVVGPTGAGKSVLL 458 (811)
T ss_pred eEEEECCCCCCHHHHH
Confidence 4567899999999987
No 458
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=40.91 E-value=16 Score=41.07 Aligned_cols=38 Identities=13% Similarity=0.124 Sum_probs=25.4
Q ss_pred CCHHHHHHHHHHHHHHHhhcCCceEEEeecCCCCCcceeecc
Q psy7270 68 ATQAMVYSDIGEEMLEHAFEGYNVCIFAYGQTGAGKSYTMMG 109 (459)
Q Consensus 68 ~sQ~~vy~~~~~plv~~~l~G~n~ti~aYGqTgSGKT~Tm~G 109 (459)
..|++... .++.-+..+....++-||++|+|||+...|
T Consensus 185 igr~~ei~----~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~ 222 (731)
T TIGR02639 185 IGREDELE----RTIQVLCRRKKNNPLLVGEPGVGKTAIAEG 222 (731)
T ss_pred cCcHHHHH----HHHHHHhcCCCCceEEECCCCCCHHHHHHH
Confidence 44555554 344444455555678999999999998755
No 459
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=40.82 E-value=1.7e+02 Score=25.61 Aligned_cols=12 Identities=33% Similarity=0.340 Sum_probs=6.8
Q ss_pred hhhhhHhHHHHH
Q psy7270 250 GANINKSLTTLG 261 (459)
Q Consensus 250 ~~~IN~SL~~L~ 261 (459)
..+||..|.++|
T Consensus 4 ~~yiN~~L~s~G 15 (151)
T PF11559_consen 4 IEYINQQLLSRG 15 (151)
T ss_pred HHHHHHHHHHCC
Confidence 345666666554
No 460
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=40.74 E-value=21 Score=39.99 Aligned_cols=59 Identities=19% Similarity=0.244 Sum_probs=34.7
Q ss_pred CCHHHHHHHHHHHHHHHhhcCCceEEEeecCCCCCcceeeccC-------CC----CCCCCChHHHHHHHHHHHHh
Q psy7270 68 ATQAMVYSDIGEEMLEHAFEGYNVCIFAYGQTGAGKSYTMMGR-------QE----VEGEEGIIPMICQDLFKRIK 132 (459)
Q Consensus 68 ~sQ~~vy~~~~~plv~~~l~G~n~ti~aYGqTgSGKT~Tm~G~-------~~----~~~~~Giipr~~~~lF~~i~ 132 (459)
..|...++.+. .++ .|++ +.+-+|.||||||-..+.- +. --.+-++.|++++.+-.+..
T Consensus 201 ~~Q~~a~~~i~----~~~-~~~~-~~Ll~GvTGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg 270 (730)
T COG1198 201 QEQQAAVEAIL----SSL-GGFA-PFLLDGVTGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFG 270 (730)
T ss_pred HHHHHHHHHHH----Hhc-cccc-ceeEeCCCCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhC
Confidence 35666665443 333 4444 5567899999999544331 00 01246888888777665554
No 461
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=40.43 E-value=13 Score=33.86 Aligned_cols=15 Identities=27% Similarity=0.379 Sum_probs=12.3
Q ss_pred EEeecCCCCCcceee
Q psy7270 93 IFAYGQTGAGKSYTM 107 (459)
Q Consensus 93 i~aYGqTgSGKT~Tm 107 (459)
|.-.|.+|||||+..
T Consensus 2 i~i~G~sgsGKttla 16 (179)
T cd02028 2 VGIAGPSGSGKTTFA 16 (179)
T ss_pred EEEECCCCCCHHHHH
Confidence 566799999999764
No 462
>PF14282 FlxA: FlxA-like protein
Probab=40.41 E-value=1.9e+02 Score=23.92 Aligned_cols=21 Identities=24% Similarity=0.488 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q psy7270 348 AKLIRELKEEIQRLRDLLKQE 368 (459)
Q Consensus 348 ~~~i~~l~~ei~~L~~~l~~~ 368 (459)
+..|..|++.|..|..+|...
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~~l 38 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQEL 38 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 667888999999998888653
No 463
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=40.36 E-value=14 Score=36.58 Aligned_cols=14 Identities=50% Similarity=0.679 Sum_probs=12.0
Q ss_pred EEeecCCCCCccee
Q psy7270 93 IFAYGQTGAGKSYT 106 (459)
Q Consensus 93 i~aYGqTgSGKT~T 106 (459)
|+..|+||||||.-
T Consensus 2 i~i~G~t~~GKs~l 15 (287)
T TIGR00174 2 IFIMGPTAVGKSQL 15 (287)
T ss_pred EEEECCCCCCHHHH
Confidence 67889999999864
No 464
>PF04642 DUF601: Protein of unknown function, DUF601; InterPro: IPR006736 This family consists of several uncharacterised plant proteins which share a conserved region.
Probab=40.29 E-value=2.3e+02 Score=27.37 Aligned_cols=13 Identities=23% Similarity=0.593 Sum_probs=9.4
Q ss_pred HHHHHHHHhhccc
Q psy7270 325 STLRYADRAKQIV 337 (459)
Q Consensus 325 sTL~fa~rak~I~ 337 (459)
+-||||.+.-+++
T Consensus 162 nylrfa~KLG~~~ 174 (311)
T PF04642_consen 162 NYLRFAGKLGKLI 174 (311)
T ss_pred hhhhhHHHHHHHH
Confidence 4589998887753
No 465
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=40.26 E-value=24 Score=40.78 Aligned_cols=38 Identities=13% Similarity=0.097 Sum_probs=23.7
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcCCceEEEeecCCCCCcceee
Q psy7270 66 NFATQAMVYSDIGEEMLEHAFEGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 66 ~~~sQ~~vy~~~~~plv~~~l~G~n~ti~aYGqTgSGKT~Tm 107 (459)
+...|...... +..+.-.|...-++..|+||||||-+.
T Consensus 452 ~T~~Q~~aI~~----I~~d~~~~~~~d~Ll~adTGsGKT~va 489 (926)
T TIGR00580 452 ETPDQLKAIEE----IKADMESPRPMDRLVCGDVGFGKTEVA 489 (926)
T ss_pred CCHHHHHHHHH----HHhhhcccCcCCEEEECCCCccHHHHH
Confidence 33455554433 344444455455789999999999754
No 466
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=40.00 E-value=15 Score=35.00 Aligned_cols=17 Identities=29% Similarity=0.370 Sum_probs=14.8
Q ss_pred ceEEEeecCCCCCccee
Q psy7270 90 NVCIFAYGQTGAGKSYT 106 (459)
Q Consensus 90 n~ti~aYGqTgSGKT~T 106 (459)
+..++-+|++|+|||..
T Consensus 24 g~~~~i~G~~G~GKTtl 40 (230)
T PRK08533 24 GSLILIEGDESTGKSIL 40 (230)
T ss_pred CcEEEEECCCCCCHHHH
Confidence 34789999999999987
No 467
>KOG0994|consensus
Probab=39.99 E-value=4.6e+02 Score=31.15 Aligned_cols=19 Identities=21% Similarity=0.368 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q psy7270 350 LIRELKEEIQRLRDLLKQE 368 (459)
Q Consensus 350 ~i~~l~~ei~~L~~~l~~~ 368 (459)
.+.+|...++.||.+..+.
T Consensus 1620 ~~~eL~~~~e~lk~~~~qn 1638 (1758)
T KOG0994|consen 1620 QLGELETRMEELKHKAAQN 1638 (1758)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 4555555555555554433
No 468
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=39.98 E-value=25 Score=37.59 Aligned_cols=24 Identities=21% Similarity=0.171 Sum_probs=17.7
Q ss_pred HhhcCCce-EEEeecCCCCCcceee
Q psy7270 84 HAFEGYNV-CIFAYGQTGAGKSYTM 107 (459)
Q Consensus 84 ~~l~G~n~-ti~aYGqTgSGKT~Tm 107 (459)
.+-.|.-. .++-||+.|+|||.+.
T Consensus 28 a~~~~ri~ha~Lf~Gp~G~GKTT~A 52 (491)
T PRK14964 28 AFTLNKIPQSILLVGASGVGKTTCA 52 (491)
T ss_pred HHHcCCCCceEEEECCCCccHHHHH
Confidence 33345544 7999999999999853
No 469
>TIGR02759 TraD_Ftype type IV conjugative transfer system coupling protein TraD. The TraD protein performs an essential coupling function in conjugative type IV secretion systems. This protein sits at the inner membrane in contact with the assembled pilus and its scaffold as well as the relaxosome-plasmid DNA complex (through TraM).
Probab=39.97 E-value=11 Score=41.01 Aligned_cols=16 Identities=44% Similarity=0.677 Sum_probs=13.1
Q ss_pred EEEeecCCCCCcceee
Q psy7270 92 CIFAYGQTGAGKSYTM 107 (459)
Q Consensus 92 ti~aYGqTgSGKT~Tm 107 (459)
-++.+|.||||||..|
T Consensus 178 h~li~G~tGsGKs~~i 193 (566)
T TIGR02759 178 HILIHGTTGSGKSVAI 193 (566)
T ss_pred ceEEEcCCCCCHHHHH
Confidence 4689999999998543
No 470
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=39.95 E-value=12 Score=42.76 Aligned_cols=18 Identities=44% Similarity=0.625 Sum_probs=15.6
Q ss_pred ceEEEeecCCCCCcceee
Q psy7270 90 NVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 90 n~ti~aYGqTgSGKT~Tm 107 (459)
++-.+..|+||||||+.|
T Consensus 488 ~gh~~I~G~tGsGKS~l~ 505 (852)
T PRK13891 488 LGHTFMFGPTGAGKSTHL 505 (852)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 556789999999999987
No 471
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=39.88 E-value=14 Score=36.30 Aligned_cols=15 Identities=40% Similarity=0.532 Sum_probs=12.9
Q ss_pred EEEeecCCCCCccee
Q psy7270 92 CIFAYGQTGAGKSYT 106 (459)
Q Consensus 92 ti~aYGqTgSGKT~T 106 (459)
.|+..|.+|||||+-
T Consensus 4 liil~G~pGSGKSTl 18 (300)
T PHA02530 4 IILTVGVPGSGKSTW 18 (300)
T ss_pred EEEEEcCCCCCHHHH
Confidence 578899999999865
No 472
>PRK11546 zraP zinc resistance protein; Provisional
Probab=39.81 E-value=1.2e+02 Score=26.71 Aligned_cols=21 Identities=19% Similarity=0.289 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhc
Q psy7270 349 KLIRELKEEIQRLRDLLKQEG 369 (459)
Q Consensus 349 ~~i~~l~~ei~~L~~~l~~~~ 369 (459)
.+.+++..+...||.+|-...
T Consensus 54 ~I~~~f~~~t~~LRqqL~aKr 74 (143)
T PRK11546 54 KIHNDFYAQTSALRQQLVSKR 74 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345667778888887775543
No 473
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=39.78 E-value=2.1e+02 Score=28.30 Aligned_cols=17 Identities=18% Similarity=0.571 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy7270 414 MQQRLRDLEEQYKREKN 430 (459)
Q Consensus 414 ~~~~~~~~~~~~~~~~~ 430 (459)
+++.+..|.+++..++.
T Consensus 241 ~ee~~~~L~ekme~e~~ 257 (297)
T PF02841_consen 241 YEEHIKQLKEKMEEERE 257 (297)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444333
No 474
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=39.77 E-value=12 Score=35.41 Aligned_cols=16 Identities=31% Similarity=0.445 Sum_probs=13.1
Q ss_pred EEEeecCCCCCcceee
Q psy7270 92 CIFAYGQTGAGKSYTM 107 (459)
Q Consensus 92 ti~aYGqTgSGKT~Tm 107 (459)
.+.-.|+.|||||..|
T Consensus 25 ~~~i~GpNGsGKStll 40 (243)
T cd03272 25 HNVVVGRNGSGKSNFF 40 (243)
T ss_pred cEEEECCCCCCHHHHH
Confidence 4446799999999886
No 475
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=39.72 E-value=11 Score=37.24 Aligned_cols=17 Identities=35% Similarity=0.567 Sum_probs=14.7
Q ss_pred EEEeecCCCCCcceeec
Q psy7270 92 CIFAYGQTGAGKSYTMM 108 (459)
Q Consensus 92 ti~aYGqTgSGKT~Tm~ 108 (459)
.|+-.|.+|||||..+-
T Consensus 8 ~i~i~G~~GsGKtt~~~ 24 (288)
T PRK05416 8 LVIVTGLSGAGKSVALR 24 (288)
T ss_pred EEEEECCCCCcHHHHHH
Confidence 57889999999998763
No 476
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=39.66 E-value=13 Score=35.60 Aligned_cols=15 Identities=40% Similarity=0.450 Sum_probs=12.9
Q ss_pred EEeecCCCCCcceee
Q psy7270 93 IFAYGQTGAGKSYTM 107 (459)
Q Consensus 93 i~aYGqTgSGKT~Tm 107 (459)
|+-.|..|||||+..
T Consensus 2 Ivl~G~pGSGKST~a 16 (249)
T TIGR03574 2 IILTGLPGVGKSTFS 16 (249)
T ss_pred EEEEcCCCCCHHHHH
Confidence 678899999999754
No 477
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=39.65 E-value=32 Score=36.08 Aligned_cols=17 Identities=35% Similarity=0.468 Sum_probs=14.6
Q ss_pred ceEEEeecCCCCCccee
Q psy7270 90 NVCIFAYGQTGAGKSYT 106 (459)
Q Consensus 90 n~ti~aYGqTgSGKT~T 106 (459)
...|+-+|+||+|||+.
T Consensus 50 ~~~ILliGp~G~GKT~L 66 (443)
T PRK05201 50 PKNILMIGPTGVGKTEI 66 (443)
T ss_pred CceEEEECCCCCCHHHH
Confidence 36799999999999964
No 478
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=39.62 E-value=1.2e+02 Score=26.50 Aligned_cols=7 Identities=0% Similarity=-0.097 Sum_probs=2.6
Q ss_pred HHHHHHH
Q psy7270 320 YDETLST 326 (459)
Q Consensus 320 ~~eTlsT 326 (459)
...++++
T Consensus 33 ~~~vin~ 39 (151)
T PF11559_consen 33 DVRVINC 39 (151)
T ss_pred HHHHHHH
Confidence 3333333
No 479
>PRK01184 hypothetical protein; Provisional
Probab=39.54 E-value=14 Score=33.47 Aligned_cols=15 Identities=33% Similarity=0.344 Sum_probs=12.7
Q ss_pred EEEeecCCCCCccee
Q psy7270 92 CIFAYGQTGAGKSYT 106 (459)
Q Consensus 92 ti~aYGqTgSGKT~T 106 (459)
.|+-.|+.|||||+.
T Consensus 3 ~i~l~G~~GsGKsT~ 17 (184)
T PRK01184 3 IIGVVGMPGSGKGEF 17 (184)
T ss_pred EEEEECCCCCCHHHH
Confidence 467899999999984
No 480
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=39.49 E-value=13 Score=39.69 Aligned_cols=20 Identities=25% Similarity=0.434 Sum_probs=16.4
Q ss_pred CCceEEEeecCCCCCcceee
Q psy7270 88 GYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 88 G~n~ti~aYGqTgSGKT~Tm 107 (459)
+....|+-||+.|+|||+.-
T Consensus 274 ~~~~giLl~GpPGtGKT~lA 293 (494)
T COG0464 274 RPPKGVLLYGPPGTGKTLLA 293 (494)
T ss_pred CCCCeeEEECCCCCCHHHHH
Confidence 44557999999999999864
No 481
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=39.48 E-value=2e+02 Score=29.46 Aligned_cols=28 Identities=4% Similarity=0.279 Sum_probs=15.5
Q ss_pred CcceeeccCCCCCCCCChHHHHHHHHHHHHhhcc
Q psy7270 102 GKSYTMMGRQEVEGEEGIIPMICQDLFKRIKDTT 135 (459)
Q Consensus 102 GKT~Tm~G~~~~~~~~Giipr~~~~lF~~i~~~~ 135 (459)
|+.|-..+..+ +|. .++..|+..+....
T Consensus 57 g~~f~~p~e~D---DPn---~~~~~Il~~lr~~g 84 (359)
T PF10498_consen 57 GRKFEQPQEYD---DPN---ATISNILDELRKLG 84 (359)
T ss_pred CCCCCCCcccC---CHH---HHHHHHHHHHHccC
Confidence 55555544322 222 46777887776544
No 482
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=39.35 E-value=11 Score=31.14 Aligned_cols=15 Identities=27% Similarity=0.430 Sum_probs=12.0
Q ss_pred EEeecCCCCCcceee
Q psy7270 93 IFAYGQTGAGKSYTM 107 (459)
Q Consensus 93 i~aYGqTgSGKT~Tm 107 (459)
|+-.|.+|+|||.-+
T Consensus 2 V~iiG~~~~GKSTli 16 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLI 16 (116)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 567899999998644
No 483
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=39.22 E-value=8.7 Score=34.40 Aligned_cols=12 Identities=42% Similarity=0.645 Sum_probs=10.6
Q ss_pred ecCCCCCcceee
Q psy7270 96 YGQTGAGKSYTM 107 (459)
Q Consensus 96 YGqTgSGKT~Tm 107 (459)
.|.+|||||+.+
T Consensus 1 ~G~sGsGKSTla 12 (163)
T PRK11545 1 MGVSGSGKSAVA 12 (163)
T ss_pred CCCCCCcHHHHH
Confidence 499999999876
No 484
>PRK05541 adenylylsulfate kinase; Provisional
Probab=39.13 E-value=15 Score=32.98 Aligned_cols=16 Identities=31% Similarity=0.549 Sum_probs=13.1
Q ss_pred EEEeecCCCCCcceee
Q psy7270 92 CIFAYGQTGAGKSYTM 107 (459)
Q Consensus 92 ti~aYGqTgSGKT~Tm 107 (459)
.|+-.|.+|||||+..
T Consensus 9 ~I~i~G~~GsGKst~a 24 (176)
T PRK05541 9 VIWITGLAGSGKTTIA 24 (176)
T ss_pred EEEEEcCCCCCHHHHH
Confidence 6788999999997643
No 485
>PRK13880 conjugal transfer coupling protein TraG; Provisional
Probab=39.10 E-value=17 Score=40.14 Aligned_cols=18 Identities=22% Similarity=0.475 Sum_probs=15.3
Q ss_pred eEEEeecCCCCCcceeec
Q psy7270 91 VCIFAYGQTGAGKSYTMM 108 (459)
Q Consensus 91 ~ti~aYGqTgSGKT~Tm~ 108 (459)
.-++++|+||||||.++.
T Consensus 176 ~HvlviapTgSGKgvg~V 193 (636)
T PRK13880 176 EHVLTYAPTRSGKGVGLV 193 (636)
T ss_pred ceEEEEecCCCCCceEEE
Confidence 348999999999999774
No 486
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=39.05 E-value=3.5e+02 Score=30.76 Aligned_cols=11 Identities=9% Similarity=0.549 Sum_probs=5.0
Q ss_pred cCCCCCcceee
Q psy7270 97 GQTGAGKSYTM 107 (459)
Q Consensus 97 GqTgSGKT~Tm 107 (459)
+++.||.|.-+
T Consensus 209 ~~S~sg~t~~~ 219 (771)
T TIGR01069 209 DTSSSGETFYI 219 (771)
T ss_pred EEeCCCCEEEE
Confidence 34455544433
No 487
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=39.04 E-value=24 Score=33.12 Aligned_cols=34 Identities=21% Similarity=0.218 Sum_probs=19.9
Q ss_pred CCHHHHHHHHHHHHHHHhhcCCceEEEeecCCCCCcceee
Q psy7270 68 ATQAMVYSDIGEEMLEHAFEGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 68 ~sQ~~vy~~~~~plv~~~l~G~n~ti~aYGqTgSGKT~Tm 107 (459)
..|+..-.. +.-++..| .-|+-+|+.|||||...
T Consensus 6 ~GQe~aKrA----L~iAAaG~--h~lLl~GppGtGKTmlA 39 (206)
T PF01078_consen 6 VGQEEAKRA----LEIAAAGG--HHLLLIGPPGTGKTMLA 39 (206)
T ss_dssp SSTHHHHHH----HHHHHHCC----EEEES-CCCTHHHHH
T ss_pred cCcHHHHHH----HHHHHcCC--CCeEEECCCCCCHHHHH
Confidence 456555433 33344444 36789999999998664
No 488
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=38.89 E-value=16 Score=34.39 Aligned_cols=14 Identities=43% Similarity=0.548 Sum_probs=11.5
Q ss_pred EeecCCCCCcceee
Q psy7270 94 FAYGQTGAGKSYTM 107 (459)
Q Consensus 94 ~aYGqTgSGKT~Tm 107 (459)
=-.||.|+|||.|.
T Consensus 34 GLLGPNGAGKTT~F 47 (243)
T COG1137 34 GLLGPNGAGKTTTF 47 (243)
T ss_pred EEECCCCCCceeEE
Confidence 34699999999775
No 489
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=38.85 E-value=12 Score=33.26 Aligned_cols=14 Identities=21% Similarity=0.337 Sum_probs=11.4
Q ss_pred EeecCCCCCcceee
Q psy7270 94 FAYGQTGAGKSYTM 107 (459)
Q Consensus 94 ~aYGqTgSGKT~Tm 107 (459)
.-.|.+|||||+.+
T Consensus 3 ~i~G~~gsGKTtl~ 16 (155)
T TIGR00176 3 QIVGPKNSGKTTLI 16 (155)
T ss_pred EEECCCCCCHHHHH
Confidence 44599999999875
No 490
>PRK09401 reverse gyrase; Reviewed
Probab=38.81 E-value=23 Score=42.10 Aligned_cols=24 Identities=25% Similarity=0.374 Sum_probs=18.4
Q ss_pred HHHHHhhcCCceEEEeecCCCCCcce
Q psy7270 80 EMLEHAFEGYNVCIFAYGQTGAGKSY 105 (459)
Q Consensus 80 plv~~~l~G~n~ti~aYGqTgSGKT~ 105 (459)
..+..++.|.|..+. ++||||||.
T Consensus 87 ~~i~~il~g~dv~i~--ApTGsGKT~ 110 (1176)
T PRK09401 87 TWAKRLLLGESFAII--APTGVGKTT 110 (1176)
T ss_pred HHHHHHHCCCcEEEE--cCCCCCHHH
Confidence 345677899887555 599999995
No 491
>KOG0346|consensus
Probab=38.79 E-value=18 Score=37.71 Aligned_cols=24 Identities=33% Similarity=0.558 Sum_probs=18.8
Q ss_pred HHHHhhcCCceEEEeecCCCCCccee
Q psy7270 81 MLEHAFEGYNVCIFAYGQTGAGKSYT 106 (459)
Q Consensus 81 lv~~~l~G~n~ti~aYGqTgSGKT~T 106 (459)
.|.-+|+|.+ |+|-..||||||-+
T Consensus 49 aIplaLEgKD--vvarArTGSGKT~A 72 (569)
T KOG0346|consen 49 AIPLALEGKD--VVARARTGSGKTAA 72 (569)
T ss_pred ccchhhcCcc--eeeeeccCCCchHH
Confidence 3455789995 57888999999965
No 492
>PRK05973 replicative DNA helicase; Provisional
Probab=38.67 E-value=21 Score=34.32 Aligned_cols=25 Identities=20% Similarity=0.295 Sum_probs=18.7
Q ss_pred HHHhhcCCc--eEEEeecCCCCCccee
Q psy7270 82 LEHAFEGYN--VCIFAYGQTGAGKSYT 106 (459)
Q Consensus 82 v~~~l~G~n--~ti~aYGqTgSGKT~T 106 (459)
.+.+..|+. ..++-+|.+|+|||.-
T Consensus 54 ~~~l~GGl~~Gsl~LIaG~PG~GKT~l 80 (237)
T PRK05973 54 AEELFSQLKPGDLVLLGARPGHGKTLL 80 (237)
T ss_pred HHHhcCCCCCCCEEEEEeCCCCCHHHH
Confidence 455667776 3678899999999863
No 493
>KOG0344|consensus
Probab=38.52 E-value=19 Score=38.65 Aligned_cols=25 Identities=24% Similarity=0.444 Sum_probs=17.6
Q ss_pred HHHHhhcCCceEEEeecCCCCCcceee
Q psy7270 81 MLEHAFEGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 81 lv~~~l~G~n~ti~aYGqTgSGKT~Tm 107 (459)
.+.-++.+-+ ++|+++||||||+..
T Consensus 166 aipvfl~~r~--~lAcapTGsgKtlaf 190 (593)
T KOG0344|consen 166 AIPVFLEKRD--VLACAPTGSGKTLAF 190 (593)
T ss_pred hhhhhhcccc--eEEeccCCCcchhhh
Confidence 3344444444 599999999998764
No 494
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=38.50 E-value=16 Score=33.02 Aligned_cols=17 Identities=47% Similarity=0.505 Sum_probs=14.2
Q ss_pred eEEEeecCCCCCcceee
Q psy7270 91 VCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 91 ~ti~aYGqTgSGKT~Tm 107 (459)
..|+-.|++|||||...
T Consensus 5 ~~I~liG~~GaGKStl~ 21 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIG 21 (172)
T ss_pred CEEEEECCCCcCHHHHH
Confidence 35889999999998764
No 495
>PRK05480 uridine/cytidine kinase; Provisional
Probab=38.37 E-value=15 Score=34.12 Aligned_cols=17 Identities=29% Similarity=0.419 Sum_probs=13.6
Q ss_pred eEEEeecCCCCCcceee
Q psy7270 91 VCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 91 ~ti~aYGqTgSGKT~Tm 107 (459)
-.|.--|.+|||||+..
T Consensus 7 ~iI~I~G~sGsGKTTl~ 23 (209)
T PRK05480 7 IIIGIAGGSGSGKTTVA 23 (209)
T ss_pred EEEEEECCCCCCHHHHH
Confidence 35677899999999664
No 496
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=38.29 E-value=4.7e+02 Score=31.41 Aligned_cols=21 Identities=38% Similarity=0.623 Sum_probs=12.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHh
Q psy7270 347 NAKLIRELKEEIQRLRDLLKQ 367 (459)
Q Consensus 347 ~~~~i~~l~~ei~~L~~~l~~ 367 (459)
+...|..|+.+|..|.++|+.
T Consensus 769 D~~~I~~l~~~i~~L~~~l~~ 789 (1201)
T PF12128_consen 769 DPERIQQLKQEIEQLEKELKR 789 (1201)
T ss_pred CHHHHHHHHHHHHHHHHHHHH
Confidence 344566666666666666543
No 497
>TIGR03783 Bac_Flav_CT_G Bacteroides conjugation system ATPase, TraG family. Members of this family include the predicted ATPase, TraG, encoded by transfer region genes of conjugative transposons of Bacteroides, such as CTnDOT, found on the main chromosome. Members also include TraG homologs borne on plasmids in Bacteroides. The protein family is related to the conjugative transfer system ATPase VirB4.
Probab=38.20 E-value=12 Score=42.69 Aligned_cols=19 Identities=37% Similarity=0.564 Sum_probs=16.5
Q ss_pred CceEEEeecCCCCCcceee
Q psy7270 89 YNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 89 ~n~ti~aYGqTgSGKT~Tm 107 (459)
.|+-.+..|+||||||+.|
T Consensus 437 ~n~N~~I~G~sGsGKS~l~ 455 (829)
T TIGR03783 437 TNRNKFILGPSGSGKSFFT 455 (829)
T ss_pred ccCceEEECCCCCCHHHHH
Confidence 3677889999999999987
No 498
>PRK13949 shikimate kinase; Provisional
Probab=37.91 E-value=15 Score=33.05 Aligned_cols=16 Identities=44% Similarity=0.509 Sum_probs=13.3
Q ss_pred EEEeecCCCCCcceee
Q psy7270 92 CIFAYGQTGAGKSYTM 107 (459)
Q Consensus 92 ti~aYGqTgSGKT~Tm 107 (459)
.|+-.|+.|||||...
T Consensus 3 ~I~liG~~GsGKstl~ 18 (169)
T PRK13949 3 RIFLVGYMGAGKTTLG 18 (169)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788999999998653
No 499
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=37.85 E-value=26 Score=40.03 Aligned_cols=18 Identities=28% Similarity=0.335 Sum_probs=14.7
Q ss_pred ceEEEeecCCCCCcceee
Q psy7270 90 NVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 90 n~ti~aYGqTgSGKT~Tm 107 (459)
|..++..|+||||||..+
T Consensus 17 ~~~vIi~a~TGSGKTT~v 34 (819)
T TIGR01970 17 HPQVVLEAPPGAGKSTAV 34 (819)
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 456788999999999754
No 500
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=37.79 E-value=24 Score=34.61 Aligned_cols=31 Identities=10% Similarity=0.158 Sum_probs=0.0
Q ss_pred HHHHHHHHhh-cCCceEEEeecCCCCCcceee
Q psy7270 77 IGEEMLEHAF-EGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 77 ~~~plv~~~l-~G~n~ti~aYGqTgSGKT~Tm 107 (459)
....++..++ .|--..+.-+|++|||||..+
T Consensus 97 ~~~~~l~~l~~~~~~~~~~i~g~~g~GKttl~ 128 (270)
T TIGR02858 97 AADKLLPYLVRNNRVLNTLIISPPQCGKTTLL 128 (270)
T ss_pred cHHHHHHHHHhCCCeeEEEEEcCCCCCHHHHH
Done!