Query psy7270
Match_columns 459
No_of_seqs 306 out of 1918
Neff 7.8
Searched_HMMs 29240
Date Fri Aug 16 22:25:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7270.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7270hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2zfi_A Kinesin-like protein KI 100.0 2E-89 6.8E-94 692.3 29.4 341 1-345 3-363 (366)
2 3b6u_A Kinesin-like protein KI 100.0 2E-89 6.8E-94 691.1 23.8 333 2-355 21-372 (372)
3 2y65_A Kinesin, kinesin heavy 100.0 1.8E-88 6E-93 683.9 25.2 331 2-364 11-362 (365)
4 2owm_A Nckin3-434, related to 100.0 1.6E-87 5.4E-92 692.2 28.8 345 2-351 38-429 (443)
5 2vvg_A Kinesin-2; motor protei 100.0 7.4E-88 2.5E-92 675.8 24.2 324 2-349 4-348 (350)
6 3cob_A Kinesin heavy chain-lik 100.0 3.7E-87 1.3E-91 674.5 27.5 329 2-364 5-353 (369)
7 1goj_A Kinesin, kinesin heavy 100.0 1.2E-86 4.2E-91 668.7 29.6 320 2-349 6-343 (355)
8 3gbj_A KIF13B protein; kinesin 100.0 1.6E-86 5.4E-91 668.3 29.0 325 2-335 1-349 (354)
9 3bfn_A Kinesin-like protein KI 100.0 3.1E-87 1.1E-91 677.1 22.4 326 2-356 21-367 (388)
10 1t5c_A CENP-E protein, centrom 100.0 2.5E-86 8.7E-91 665.1 25.8 318 1-349 3-341 (349)
11 3lre_A Kinesin-like protein KI 100.0 5.5E-86 1.9E-90 664.6 27.6 315 2-336 10-355 (355)
12 1x88_A Kinesin-like protein KI 100.0 1.2E-86 4.1E-91 670.3 19.6 322 2-345 8-359 (359)
13 1bg2_A Kinesin; motor protein, 100.0 1.1E-85 3.8E-90 655.0 24.3 302 2-336 7-325 (325)
14 2wbe_C Bipolar kinesin KRP-130 100.0 9.3E-86 3.2E-90 666.5 24.0 322 2-346 23-371 (373)
15 4a14_A Kinesin, kinesin-like p 100.0 4.2E-84 1.4E-88 649.4 24.5 309 2-334 11-344 (344)
16 3nwn_A Kinesin-like protein KI 100.0 3.3E-83 1.1E-87 644.1 23.8 309 2-336 24-359 (359)
17 1ry6_A Internal kinesin; kines 100.0 3.8E-83 1.3E-87 644.0 23.0 317 3-345 1-340 (360)
18 2h58_A Kinesin-like protein KI 100.0 3E-82 1E-86 631.6 26.5 303 2-337 4-329 (330)
19 2heh_A KIF2C protein; kinesin, 100.0 6.6E-83 2.3E-87 645.2 21.6 310 2-339 51-385 (387)
20 3t0q_A AGR253WP; kinesin, alph 100.0 4.2E-82 1.4E-86 635.5 26.7 310 2-340 5-348 (349)
21 2rep_A Kinesin-like protein KI 100.0 2.3E-82 7.7E-87 641.1 24.8 311 2-336 22-376 (376)
22 1v8k_A Kinesin-like protein KI 100.0 9.5E-83 3.2E-87 647.8 21.4 312 2-341 71-407 (410)
23 2nr8_A Kinesin-like protein KI 100.0 5.2E-82 1.8E-86 635.2 24.1 308 2-336 23-358 (358)
24 1f9v_A Kinesin-like protein KA 100.0 2.9E-81 1E-85 628.4 23.7 308 2-341 3-346 (347)
25 3u06_A Protein claret segregat 100.0 8.3E-81 2.8E-85 636.7 25.6 307 2-339 59-385 (412)
26 4etp_A Kinesin-like protein KA 100.0 5.7E-80 1.9E-84 630.7 26.0 310 2-341 59-402 (403)
27 3dc4_A Kinesin-like protein NO 100.0 3.4E-80 1.2E-84 618.9 23.2 300 2-341 22-340 (344)
28 4h1g_A Maltose binding protein 100.0 3.3E-74 1.1E-78 632.1 25.4 306 1-337 373-712 (715)
29 2kin_B Kinesin; motor protein, 100.0 6E-34 2E-38 232.6 6.4 98 250-358 1-99 (100)
30 3kin_B Kinesin heavy chain; mo 100.0 3.9E-31 1.3E-35 223.4 9.4 97 254-361 1-98 (117)
31 2o0a_A S.cerevisiae chromosome 99.8 4.5E-19 1.5E-23 168.4 6.2 249 2-343 24-296 (298)
32 3ec2_A DNA replication protein 94.2 0.015 5E-07 51.5 1.6 38 69-107 18-55 (180)
33 2qgz_A Helicase loader, putati 93.4 0.033 1.1E-06 54.2 2.7 39 69-108 132-170 (308)
34 2w58_A DNAI, primosome compone 93.4 0.033 1.1E-06 50.0 2.6 38 69-107 33-71 (202)
35 3oja_B Anopheles plasmodium-re 92.3 3.5 0.00012 43.2 16.8 36 350-385 457-492 (597)
36 4b4t_K 26S protease regulatory 91.2 0.6 2E-05 47.5 8.8 45 91-135 207-265 (428)
37 1jbk_A CLPB protein; beta barr 91.1 0.11 3.9E-06 45.0 3.0 29 79-107 32-60 (195)
38 3te6_A Regulatory protein SIR3 90.7 0.084 2.9E-06 51.6 1.9 33 75-107 30-62 (318)
39 2p65_A Hypothetical protein PF 90.0 0.13 4.3E-06 44.7 2.3 29 79-107 32-60 (187)
40 4b4t_M 26S protease regulatory 89.6 1.2 4.2E-05 45.2 9.5 65 71-135 191-274 (434)
41 3t15_A Ribulose bisphosphate c 89.0 0.18 6.2E-06 48.4 2.7 37 71-107 13-53 (293)
42 4b4t_I 26S protease regulatory 88.4 1.8 6.2E-05 43.9 9.6 45 91-135 217-275 (437)
43 3ghg_A Fibrinogen alpha chain; 88.0 4.7 0.00016 41.2 12.2 19 352-370 60-78 (562)
44 1g8p_A Magnesium-chelatase 38 87.2 0.21 7.2E-06 48.5 1.9 44 49-107 19-62 (350)
45 1qde_A EIF4A, translation init 87.1 0.27 9.1E-06 44.6 2.4 24 81-106 44-67 (224)
46 1d2n_A N-ethylmaleimide-sensit 87.0 0.44 1.5E-05 44.8 3.9 39 69-107 37-81 (272)
47 4b4t_J 26S protease regulatory 86.7 1.9 6.5E-05 43.4 8.6 65 71-135 158-241 (405)
48 4b4t_L 26S protease subunit RP 86.6 3.2 0.00011 42.2 10.3 45 91-135 216-274 (437)
49 2gxq_A Heat resistant RNA depe 86.4 0.31 1.1E-05 43.4 2.5 23 82-106 32-54 (207)
50 1vec_A ATP-dependent RNA helic 86.1 0.36 1.2E-05 43.0 2.7 25 81-107 33-57 (206)
51 1l8q_A Chromosomal replication 85.6 0.33 1.1E-05 46.9 2.3 18 90-107 37-54 (324)
52 3h4m_A Proteasome-activating n 85.5 0.47 1.6E-05 44.7 3.3 19 89-107 50-68 (285)
53 2chg_A Replication factor C sm 85.4 0.39 1.3E-05 42.6 2.6 35 69-107 21-55 (226)
54 1p9r_A General secretion pathw 85.3 0.39 1.3E-05 48.7 2.8 28 80-107 157-184 (418)
55 3bos_A Putative DNA replicatio 85.1 0.46 1.6E-05 43.0 3.0 20 88-107 50-69 (242)
56 3dkp_A Probable ATP-dependent 85.0 0.39 1.3E-05 44.2 2.5 24 81-106 59-82 (245)
57 3uk6_A RUVB-like 2; hexameric 85.0 0.35 1.2E-05 47.4 2.2 38 69-107 48-87 (368)
58 2bjv_A PSP operon transcriptio 84.8 0.42 1.4E-05 44.7 2.5 18 90-107 29-46 (265)
59 3bor_A Human initiation factor 84.7 0.25 8.5E-06 45.5 1.0 25 81-107 60-84 (237)
60 2v1u_A Cell division control p 83.9 0.23 7.8E-06 48.7 0.3 39 68-107 22-61 (387)
61 3jvv_A Twitching mobility prot 83.8 0.43 1.5E-05 47.3 2.2 27 81-107 114-140 (356)
62 2pl3_A Probable ATP-dependent 83.6 0.49 1.7E-05 43.2 2.5 24 81-106 55-78 (236)
63 2fxo_A Myosin heavy chain, car 83.2 8 0.00027 32.2 9.6 113 340-452 4-121 (129)
64 2kjq_A DNAA-related protein; s 83.1 0.36 1.2E-05 41.4 1.2 17 91-107 37-53 (149)
65 2r62_A Cell division protease 83.1 0.52 1.8E-05 44.0 2.4 18 90-107 44-61 (268)
66 2qz4_A Paraplegin; AAA+, SPG7, 82.9 0.93 3.2E-05 41.8 4.1 19 89-107 38-56 (262)
67 1t6n_A Probable ATP-dependent 82.8 0.56 1.9E-05 42.3 2.5 25 81-107 44-68 (220)
68 1lv7_A FTSH; alpha/beta domain 82.6 0.83 2.8E-05 42.4 3.6 18 90-107 45-62 (257)
69 3ly5_A ATP-dependent RNA helic 82.5 0.4 1.4E-05 45.0 1.4 24 81-106 84-107 (262)
70 3iuy_A Probable ATP-dependent 82.4 0.59 2E-05 42.4 2.4 25 81-107 50-74 (228)
71 3cf0_A Transitional endoplasmi 82.1 0.58 2E-05 44.9 2.4 18 90-107 49-66 (301)
72 3syl_A Protein CBBX; photosynt 82.1 0.84 2.9E-05 43.4 3.5 20 88-107 65-84 (309)
73 3b6e_A Interferon-induced heli 82.0 0.29 1E-05 43.7 0.2 23 83-107 43-65 (216)
74 1wrb_A DJVLGB; RNA helicase, D 81.9 0.62 2.1E-05 43.1 2.4 25 81-107 53-77 (253)
75 1fnn_A CDC6P, cell division co 81.7 1.3 4.4E-05 43.4 4.8 39 68-107 20-61 (389)
76 1u0j_A DNA replication protein 81.5 0.77 2.6E-05 43.6 3.0 29 79-107 90-121 (267)
77 3fmo_B ATP-dependent RNA helic 81.0 0.61 2.1E-05 44.8 2.1 26 81-106 122-147 (300)
78 3oja_B Anopheles plasmodium-re 80.9 8.2 0.00028 40.4 11.0 25 310-334 391-415 (597)
79 2z4s_A Chromosomal replication 80.8 0.58 2E-05 47.7 1.9 17 91-107 131-147 (440)
80 2c9o_A RUVB-like 1; hexameric 80.7 1.3 4.3E-05 45.3 4.5 39 68-107 40-80 (456)
81 2oxc_A Probable ATP-dependent 80.7 0.73 2.5E-05 42.0 2.4 23 82-106 55-77 (230)
82 3fe2_A Probable ATP-dependent 80.5 0.63 2.2E-05 42.8 1.9 23 82-106 60-82 (242)
83 3ber_A Probable ATP-dependent 80.3 0.77 2.6E-05 42.6 2.5 25 81-107 73-97 (249)
84 1tue_A Replication protein E1; 80.1 0.56 1.9E-05 42.8 1.4 26 82-107 48-75 (212)
85 3llm_A ATP-dependent RNA helic 80.1 0.63 2.2E-05 42.7 1.8 26 80-107 68-93 (235)
86 3b9p_A CG5977-PA, isoform A; A 79.9 1.1 3.9E-05 42.3 3.6 18 90-107 54-71 (297)
87 2eyu_A Twitching motility prot 79.9 0.67 2.3E-05 43.7 1.9 19 89-107 24-42 (261)
88 2qby_B CDC6 homolog 3, cell di 79.4 1.2 4E-05 43.7 3.6 39 68-107 23-62 (384)
89 3co5_A Putative two-component 79.2 1 3.4E-05 38.0 2.6 28 81-109 19-46 (143)
90 3n70_A Transport activator; si 79.2 0.77 2.6E-05 38.8 1.9 20 88-107 22-41 (145)
91 3eiq_A Eukaryotic initiation f 79.1 0.85 2.9E-05 45.0 2.5 25 80-106 69-93 (414)
92 1ixz_A ATP-dependent metallopr 78.9 0.77 2.6E-05 42.5 2.0 16 92-107 51-66 (254)
93 1q0u_A Bstdead; DEAD protein, 78.7 0.54 1.8E-05 42.5 0.8 23 82-106 35-57 (219)
94 3i00_A HIP-I, huntingtin-inter 78.2 27 0.00092 28.7 11.1 29 343-371 9-37 (120)
95 3pfi_A Holliday junction ATP-d 78.1 1.4 4.7E-05 42.6 3.6 39 68-107 32-72 (338)
96 1hqc_A RUVB; extended AAA-ATPa 77.8 1.3 4.4E-05 42.4 3.3 38 69-107 16-55 (324)
97 2dfs_A Myosin-5A; myosin-V, in 77.6 9.9 0.00034 43.1 10.8 20 87-106 153-172 (1080)
98 3fmp_B ATP-dependent RNA helic 77.5 0.97 3.3E-05 46.1 2.4 26 81-106 122-147 (479)
99 1sxj_C Activator 1 40 kDa subu 77.4 1.1 3.7E-05 43.6 2.6 35 69-107 29-63 (340)
100 3d8b_A Fidgetin-like protein 1 77.2 1.5 5.1E-05 43.1 3.6 20 88-107 115-134 (357)
101 1njg_A DNA polymerase III subu 76.8 1.2 4.2E-05 39.7 2.7 17 91-107 46-62 (250)
102 1gvn_B Zeta; postsegregational 76.4 2.4 8.1E-05 40.4 4.7 32 76-107 14-50 (287)
103 1ofh_A ATP-dependent HSL prote 76.4 1.1 3.7E-05 42.4 2.3 18 90-107 50-67 (310)
104 3fht_A ATP-dependent RNA helic 76.3 1.1 3.7E-05 44.2 2.3 26 81-106 55-80 (412)
105 2j0s_A ATP-dependent RNA helic 76.0 1.1 3.7E-05 44.4 2.2 25 81-107 67-91 (410)
106 4fcw_A Chaperone protein CLPB; 75.8 1.1 3.6E-05 42.7 2.0 38 69-107 21-64 (311)
107 2fz4_A DNA repair protein RAD2 75.6 1 3.6E-05 41.5 1.9 24 82-107 102-125 (237)
108 3bas_A Myosin heavy chain, str 75.6 13 0.00046 28.7 8.0 31 338-368 3-33 (89)
109 3pvs_A Replication-associated 75.5 0.97 3.3E-05 46.1 1.8 39 68-107 29-67 (447)
110 2oap_1 GSPE-2, type II secreti 75.3 1.3 4.4E-05 46.1 2.6 20 86-107 258-277 (511)
111 1iqp_A RFCS; clamp loader, ext 75.2 1.4 4.7E-05 42.0 2.7 36 68-107 28-63 (327)
112 3pey_A ATP-dependent RNA helic 75.0 1.2 4.2E-05 43.4 2.3 27 81-107 35-61 (395)
113 4b4t_H 26S protease regulatory 75.0 2.5 8.4E-05 43.3 4.6 46 90-135 243-302 (467)
114 1sxj_D Activator 1 41 kDa subu 74.3 1.1 3.6E-05 43.4 1.6 27 81-107 49-75 (353)
115 3h1t_A Type I site-specific re 74.3 1.4 4.9E-05 46.2 2.7 27 81-108 190-216 (590)
116 3u61_B DNA polymerase accessor 74.2 2 7E-05 41.1 3.6 36 68-107 29-65 (324)
117 2z0m_A 337AA long hypothetical 74.2 1.3 4.4E-05 42.2 2.2 24 82-107 25-48 (337)
118 1s2m_A Putative ATP-dependent 74.1 1.3 4.4E-05 43.6 2.2 24 82-107 52-75 (400)
119 3vfd_A Spastin; ATPase, microt 74.0 2.4 8.1E-05 42.1 4.1 18 90-107 148-165 (389)
120 2qby_A CDC6 homolog 1, cell di 74.0 0.81 2.8E-05 44.6 0.7 39 68-107 23-62 (386)
121 2ewv_A Twitching motility prot 73.9 0.89 3.1E-05 45.2 1.0 27 81-107 127-153 (372)
122 2r44_A Uncharacterized protein 73.6 1.2 4.1E-05 43.0 1.8 34 68-107 30-63 (331)
123 1iy2_A ATP-dependent metallopr 73.5 1.3 4.6E-05 41.6 2.1 16 92-107 75-90 (278)
124 2i4i_A ATP-dependent RNA helic 72.4 1.5 5.1E-05 43.3 2.2 24 82-107 46-69 (417)
125 4b3f_X DNA-binding protein smu 71.3 1.6 5.4E-05 46.6 2.2 27 81-108 197-223 (646)
126 3eie_A Vacuolar protein sortin 71.2 1.1 3.7E-05 43.4 0.8 17 91-107 52-68 (322)
127 1in4_A RUVB, holliday junction 71.2 2.1 7E-05 41.6 2.9 16 92-107 53-68 (334)
128 1xwi_A SKD1 protein; VPS4B, AA 70.8 1.1 3.8E-05 43.4 0.8 17 91-107 46-62 (322)
129 1jr3_A DNA polymerase III subu 70.7 3 0.0001 40.5 4.0 36 68-107 19-55 (373)
130 2chq_A Replication factor C sm 70.6 1.3 4.5E-05 42.0 1.2 35 69-107 21-55 (319)
131 1rif_A DAR protein, DNA helica 70.5 1.3 4.3E-05 41.8 1.1 23 83-107 123-145 (282)
132 3oiy_A Reverse gyrase helicase 70.2 1.9 6.4E-05 42.9 2.4 24 81-106 29-52 (414)
133 3i5x_A ATP-dependent RNA helic 69.4 2.3 8E-05 44.1 3.0 26 81-106 102-127 (563)
134 1n0w_A DNA repair protein RAD5 68.7 1.9 6.6E-05 39.0 1.9 29 79-107 10-41 (243)
135 2x8a_A Nuclear valosin-contain 68.7 2 6.8E-05 40.6 2.1 15 93-107 47-61 (274)
136 1w5s_A Origin recognition comp 68.5 3 0.0001 41.1 3.4 25 83-107 40-69 (412)
137 3fho_A ATP-dependent RNA helic 68.4 1.9 6.4E-05 44.5 1.9 25 82-106 150-174 (508)
138 1xti_A Probable ATP-dependent 68.0 2.2 7.6E-05 41.6 2.3 25 81-107 38-62 (391)
139 2dfs_A Myosin-5A; myosin-V, in 67.8 20 0.00067 40.7 10.2 15 412-426 1019-1033(1080)
140 3pxg_A Negative regulator of g 67.7 2.6 8.9E-05 43.1 2.9 37 68-108 183-219 (468)
141 2v1x_A ATP-dependent DNA helic 67.0 2.7 9.3E-05 44.4 2.9 24 81-106 52-75 (591)
142 2p5t_B PEZT; postsegregational 66.9 2.5 8.5E-05 39.2 2.3 30 77-106 14-48 (253)
143 1w36_D RECD, exodeoxyribonucle 66.6 2.2 7.5E-05 45.3 2.1 19 90-108 164-182 (608)
144 4a2p_A RIG-I, retinoic acid in 66.4 2.5 8.7E-05 43.4 2.5 25 81-107 15-39 (556)
145 1hv8_A Putative ATP-dependent 66.3 2.2 7.5E-05 41.0 1.9 25 82-107 37-61 (367)
146 1sxj_B Activator 1 37 kDa subu 65.9 2.4 8.3E-05 40.1 2.1 36 68-107 24-59 (323)
147 1um8_A ATP-dependent CLP prote 65.6 2.4 8.1E-05 41.8 2.0 18 90-107 72-89 (376)
148 1fuu_A Yeast initiation factor 65.0 1.6 5.6E-05 42.6 0.6 24 81-106 51-74 (394)
149 2db3_A ATP-dependent RNA helic 64.9 3.3 0.00011 41.7 2.9 24 81-106 86-109 (434)
150 3oja_A Leucine-rich immune mol 64.7 1.1E+02 0.0038 30.7 14.6 9 225-233 238-246 (487)
151 3upu_A ATP-dependent DNA helic 64.3 3.7 0.00013 41.8 3.2 35 68-107 28-62 (459)
152 2ce7_A Cell division protein F 64.3 4.7 0.00016 41.4 4.0 43 91-133 50-106 (476)
153 2w0m_A SSO2452; RECA, SSPF, un 64.3 2.5 8.6E-05 37.8 1.7 28 80-107 10-40 (235)
154 3tbk_A RIG-I helicase domain; 64.2 3 0.0001 42.7 2.5 23 82-106 13-35 (555)
155 1ojl_A Transcriptional regulat 64.0 3.3 0.00011 39.7 2.6 20 88-107 23-42 (304)
156 2cvh_A DNA repair and recombin 64.0 2.8 9.6E-05 37.3 2.0 28 80-107 7-37 (220)
157 3c8u_A Fructokinase; YP_612366 63.6 4 0.00014 36.4 2.9 29 79-107 9-39 (208)
158 4gp7_A Metallophosphoesterase; 63.5 1.9 6.6E-05 37.3 0.8 17 92-108 11-27 (171)
159 2gk6_A Regulator of nonsense t 63.5 2.8 9.5E-05 44.6 2.1 18 91-108 196-213 (624)
160 3b85_A Phosphate starvation-in 63.1 3.1 0.00011 37.6 2.1 26 80-107 14-39 (208)
161 2qp9_X Vacuolar protein sortin 63.1 1.8 6.3E-05 42.5 0.6 17 91-107 85-101 (355)
162 3sqw_A ATP-dependent RNA helic 63.0 3.7 0.00013 43.0 3.0 26 81-106 51-76 (579)
163 2fwr_A DNA repair protein RAD2 62.9 2.9 9.9E-05 42.3 2.1 24 82-107 102-125 (472)
164 1rz3_A Hypothetical protein rb 62.8 4.4 0.00015 35.9 3.1 28 80-107 9-39 (201)
165 1deq_A Fibrinogen (alpha chain 62.4 57 0.002 32.0 10.9 14 401-414 116-129 (390)
166 4gl2_A Interferon-induced heli 62.2 3.2 0.00011 44.3 2.3 25 81-107 15-39 (699)
167 1sxj_E Activator 1 40 kDa subu 62.2 2.2 7.7E-05 41.2 1.1 15 93-107 39-53 (354)
168 3hu3_A Transitional endoplasmi 61.9 5.1 0.00017 41.3 3.7 20 88-107 236-255 (489)
169 3hws_A ATP-dependent CLP prote 61.9 2 6.8E-05 42.1 0.6 18 90-107 51-68 (363)
170 3lw7_A Adenylate kinase relate 61.7 2.6 8.9E-05 35.7 1.3 16 92-107 3-18 (179)
171 4a74_A DNA repair and recombin 61.4 3.5 0.00012 36.9 2.1 28 80-107 12-42 (231)
172 3t34_A Dynamin-related protein 61.1 30 0.001 33.5 9.2 16 92-107 36-51 (360)
173 1e9r_A Conjugal transfer prote 60.9 1.8 6.2E-05 43.6 0.1 18 90-107 53-70 (437)
174 3nbx_X ATPase RAVA; AAA+ ATPas 60.9 4.3 0.00015 42.0 3.0 25 81-107 34-58 (500)
175 2b8t_A Thymidine kinase; deoxy 60.4 2.2 7.5E-05 39.2 0.6 20 90-109 12-31 (223)
176 3e70_C DPA, signal recognition 60.0 5.7 0.00019 38.6 3.5 18 90-107 129-146 (328)
177 2zan_A Vacuolar protein sortin 59.9 2.4 8.1E-05 43.1 0.8 17 91-107 168-184 (444)
178 2r8r_A Sensor protein; KDPD, P 59.7 2.3 7.8E-05 39.3 0.5 19 91-109 7-25 (228)
179 3vkg_A Dynein heavy chain, cyt 59.6 26 0.00091 44.2 9.9 15 93-107 1307-1321(3245)
180 3pxi_A Negative regulator of g 59.5 5.1 0.00017 43.5 3.4 38 69-107 495-538 (758)
181 3tau_A Guanylate kinase, GMP k 58.9 2.6 8.9E-05 37.8 0.8 17 91-107 9-25 (208)
182 1wp9_A ATP-dependent RNA helic 58.5 3.5 0.00012 40.9 1.8 25 81-108 17-41 (494)
183 1sxj_A Activator 1 95 kDa subu 58.5 5 0.00017 41.5 3.0 18 90-107 77-94 (516)
184 1qvr_A CLPB protein; coiled co 58.4 6.1 0.00021 43.6 3.8 38 69-107 562-605 (854)
185 1r6b_X CLPA protein; AAA+, N-t 58.1 6.5 0.00022 42.6 3.9 38 69-107 462-505 (758)
186 2qag_C Septin-7; cell cycle, c 57.9 2.8 9.4E-05 42.4 0.8 27 85-111 26-55 (418)
187 2gza_A Type IV secretion syste 57.7 4.5 0.00016 39.8 2.4 21 85-107 172-192 (361)
188 4ag6_A VIRB4 ATPase, type IV s 57.7 2.4 8.2E-05 42.1 0.4 17 91-107 36-52 (392)
189 3tr0_A Guanylate kinase, GMP k 57.7 2.8 9.6E-05 36.9 0.8 16 92-107 9-24 (205)
190 3pxi_A Negative regulator of g 57.6 6.5 0.00022 42.7 3.8 37 68-108 183-219 (758)
191 1kgd_A CASK, peripheral plasma 57.6 2.8 9.6E-05 36.6 0.7 16 92-107 7-22 (180)
192 3cf2_A TER ATPase, transitiona 57.5 8.8 0.0003 42.1 4.8 62 71-132 214-294 (806)
193 2ykg_A Probable ATP-dependent 57.5 5.1 0.00017 42.7 2.9 23 82-106 22-44 (696)
194 2orw_A Thymidine kinase; TMTK, 57.2 2.1 7.2E-05 37.8 -0.1 18 92-109 5-22 (184)
195 1ly1_A Polynucleotide kinase; 56.6 3.5 0.00012 35.3 1.2 16 91-106 3-18 (181)
196 3a00_A Guanylate kinase, GMP k 56.6 2.6 9E-05 36.9 0.4 15 93-107 4-18 (186)
197 3trf_A Shikimate kinase, SK; a 56.5 3.6 0.00012 35.6 1.3 15 92-106 7-21 (185)
198 3o0z_A RHO-associated protein 56.4 99 0.0034 26.8 12.0 18 413-430 94-111 (168)
199 1qhx_A CPT, protein (chloramph 56.3 3.6 0.00012 35.3 1.2 17 91-107 4-20 (178)
200 2dhr_A FTSH; AAA+ protein, hex 55.9 8 0.00027 39.9 3.9 16 92-107 66-81 (499)
201 3lfu_A DNA helicase II; SF1 he 55.8 3.3 0.00011 43.8 1.0 21 89-109 21-41 (647)
202 1r6b_X CLPA protein; AAA+, N-t 55.6 5 0.00017 43.5 2.5 36 68-107 189-224 (758)
203 2dr3_A UPF0273 protein PH0284; 55.4 4 0.00014 36.9 1.4 26 82-107 12-40 (247)
204 2jlq_A Serine protease subunit 55.4 3.1 0.00011 42.2 0.8 24 82-106 12-35 (451)
205 2xzl_A ATP-dependent helicase 55.3 4.4 0.00015 44.5 1.9 18 91-108 376-393 (802)
206 1f5n_A Interferon-induced guan 55.2 41 0.0014 35.4 9.3 20 87-106 35-54 (592)
207 1lkx_A Myosin IE heavy chain; 55.2 7.2 0.00025 42.0 3.6 22 86-107 90-111 (697)
208 1rj9_A FTSY, signal recognitio 55.0 3.6 0.00012 39.6 1.1 17 91-107 103-119 (304)
209 2qnr_A Septin-2, protein NEDD5 55.0 2.9 0.0001 40.0 0.4 24 84-107 12-35 (301)
210 2wjy_A Regulator of nonsense t 54.8 4.8 0.00016 44.2 2.1 19 91-109 372-390 (800)
211 1xx6_A Thymidine kinase; NESG, 54.8 2.6 9E-05 37.6 0.1 18 92-109 10-27 (191)
212 1lvg_A Guanylate kinase, GMP k 54.7 2.9 9.8E-05 37.2 0.3 16 92-107 6-21 (198)
213 3iij_A Coilin-interacting nucl 54.5 3.7 0.00013 35.4 1.0 16 92-107 13-28 (180)
214 1ye8_A Protein THEP1, hypothet 54.4 3.1 0.00011 36.5 0.5 15 93-107 3-17 (178)
215 1zp6_A Hypothetical protein AT 54.4 3.5 0.00012 35.8 0.9 17 91-107 10-26 (191)
216 3e1s_A Exodeoxyribonuclease V, 54.4 4.7 0.00016 42.4 2.0 19 90-108 204-222 (574)
217 1deq_A Fibrinogen (alpha chain 54.4 51 0.0017 32.4 9.0 44 408-451 112-157 (390)
218 3vkg_A Dynein heavy chain, cyt 53.8 1.1E+02 0.0037 38.9 13.8 22 347-368 1932-1953(3245)
219 1yke_B RNA polymerase II holoe 53.8 73 0.0025 27.1 9.1 47 384-430 78-124 (151)
220 3b9q_A Chloroplast SRP recepto 53.7 3.5 0.00012 39.6 0.8 17 91-107 101-117 (302)
221 1w9i_A Myosin II heavy chain; 53.6 7.9 0.00027 42.2 3.6 21 87-107 169-189 (770)
222 4dci_A Uncharacterized protein 53.2 1E+02 0.0035 26.2 9.8 38 336-373 16-53 (150)
223 3sop_A Neuronal-specific septi 52.8 3.6 0.00012 38.8 0.7 19 89-107 1-19 (270)
224 4a2w_A RIG-I, retinoic acid in 52.5 5.3 0.00018 44.6 2.1 25 81-107 256-280 (936)
225 4a2q_A RIG-I, retinoic acid in 52.4 6 0.00021 43.2 2.5 25 81-107 256-280 (797)
226 1gm5_A RECG; helicase, replica 52.4 6.6 0.00023 42.9 2.8 36 68-107 371-406 (780)
227 2oca_A DAR protein, ATP-depend 52.3 4.8 0.00016 41.1 1.6 24 83-108 123-146 (510)
228 1oyw_A RECQ helicase, ATP-depe 52.3 3.4 0.00012 42.9 0.5 25 81-107 33-57 (523)
229 2v26_A Myosin VI; calmodulin-b 52.3 8.4 0.00029 42.1 3.5 20 87-106 137-156 (784)
230 2bdt_A BH3686; alpha-beta prot 52.0 3.9 0.00013 35.6 0.8 16 92-107 4-19 (189)
231 1odf_A YGR205W, hypothetical 3 51.8 8.9 0.00031 36.5 3.3 37 71-107 10-48 (290)
232 1qvr_A CLPB protein; coiled co 51.6 4.7 0.00016 44.5 1.4 38 68-109 173-210 (854)
233 2px0_A Flagellar biosynthesis 51.4 3.7 0.00013 39.3 0.5 17 91-107 106-122 (296)
234 2j41_A Guanylate kinase; GMP, 51.3 4.2 0.00014 35.8 0.8 16 92-107 8-23 (207)
235 2ehv_A Hypothetical protein PH 51.2 4.1 0.00014 37.0 0.7 16 92-107 32-47 (251)
236 1ykh_B RNA polymerase II holoe 50.9 1.1E+02 0.0036 25.4 9.7 43 385-427 79-121 (132)
237 1kk8_A Myosin heavy chain, str 50.7 8.6 0.00029 42.3 3.3 20 87-106 166-185 (837)
238 3vaa_A Shikimate kinase, SK; s 50.4 5.2 0.00018 35.3 1.3 16 92-107 27-42 (199)
239 3lnc_A Guanylate kinase, GMP k 50.3 4.9 0.00017 36.4 1.1 16 92-107 29-44 (231)
240 4db1_A Myosin-7; S1DC, cardiac 50.2 9.5 0.00033 41.6 3.5 21 87-107 168-188 (783)
241 1g8x_A Myosin II heavy chain f 50.1 8.7 0.0003 43.2 3.3 20 87-106 169-188 (1010)
242 2ze6_A Isopentenyl transferase 50.1 5.1 0.00017 37.2 1.2 15 92-106 3-17 (253)
243 1w7j_A Myosin VA; motor protei 50.0 9.6 0.00033 41.7 3.5 20 87-106 153-172 (795)
244 1uaa_A REP helicase, protein ( 50.0 4.8 0.00016 43.0 1.2 21 89-109 14-34 (673)
245 3ghg_A Fibrinogen alpha chain; 49.9 19 0.00066 36.8 5.4 15 348-362 63-77 (562)
246 4a4z_A Antiviral helicase SKI2 49.9 7.9 0.00027 43.5 3.0 24 81-106 47-70 (997)
247 1kht_A Adenylate kinase; phosp 49.9 4.9 0.00017 34.7 1.1 16 92-107 5-20 (192)
248 3kl4_A SRP54, signal recogniti 49.8 15 0.0005 37.2 4.7 17 91-107 98-114 (433)
249 2pt7_A CAG-ALFA; ATPase, prote 49.6 3.7 0.00013 39.9 0.2 21 85-107 168-188 (330)
250 1kag_A SKI, shikimate kinase I 49.6 5 0.00017 34.2 1.1 16 92-107 6-21 (173)
251 2ycu_A Non muscle myosin 2C, a 49.5 9.4 0.00032 42.9 3.5 20 87-106 143-162 (995)
252 1znw_A Guanylate kinase, GMP k 49.2 4.6 0.00016 36.0 0.8 16 92-107 22-37 (207)
253 1c4o_A DNA nucleotide excision 49.1 11 0.00038 40.3 3.8 40 65-109 8-47 (664)
254 2ga8_A Hypothetical 39.9 kDa p 48.9 13 0.00044 36.6 4.0 21 87-107 21-41 (359)
255 3uie_A Adenylyl-sulfate kinase 48.8 6.8 0.00023 34.6 1.8 19 89-107 24-42 (200)
256 2i3b_A HCR-ntpase, human cance 48.8 4.4 0.00015 36.0 0.5 16 92-107 3-18 (189)
257 3kb2_A SPBC2 prophage-derived 48.7 5.7 0.00019 33.6 1.2 16 92-107 3-18 (173)
258 2v6i_A RNA helicase; membrane, 48.6 5.7 0.00019 40.0 1.4 16 92-107 4-19 (431)
259 2qen_A Walker-type ATPase; unk 47.9 8.2 0.00028 36.7 2.4 17 91-107 32-48 (350)
260 2og2_A Putative signal recogni 47.9 5.4 0.00019 39.3 1.1 17 91-107 158-174 (359)
261 1gku_B Reverse gyrase, TOP-RG; 47.8 8.3 0.00028 43.6 2.7 23 81-105 64-86 (1054)
262 1a5t_A Delta prime, HOLB; zinc 47.5 11 0.00037 36.4 3.2 35 69-107 6-41 (334)
263 2yhs_A FTSY, cell division pro 47.4 9.2 0.00031 39.5 2.7 16 92-107 295-310 (503)
264 4anj_A Unconventional myosin-V 47.3 11 0.00038 42.5 3.5 21 87-107 141-161 (1052)
265 3zvr_A Dynamin-1; hydrolase, D 47.2 21 0.00071 38.9 5.6 108 92-237 53-163 (772)
266 1i84_S Smooth muscle myosin he 46.8 17 0.00058 41.6 5.2 20 87-106 166-185 (1184)
267 1z6g_A Guanylate kinase; struc 46.6 4.6 0.00016 36.5 0.3 15 93-107 26-40 (218)
268 1vma_A Cell division protein F 46.4 5.3 0.00018 38.5 0.7 17 91-107 105-121 (306)
269 3kta_A Chromosome segregation 46.3 5 0.00017 34.6 0.5 16 92-107 28-43 (182)
270 2z83_A Helicase/nucleoside tri 46.2 6.7 0.00023 39.8 1.5 15 92-106 23-37 (459)
271 2qor_A Guanylate kinase; phosp 46.1 6.1 0.00021 35.0 1.1 16 92-107 14-29 (204)
272 1f2t_A RAD50 ABC-ATPase; DNA d 46.1 6.2 0.00021 33.4 1.0 16 92-107 25-40 (149)
273 1y63_A LMAJ004144AAA protein; 46.0 6.1 0.00021 34.4 1.0 15 92-106 12-26 (184)
274 3cm0_A Adenylate kinase; ATP-b 45.9 6.7 0.00023 33.8 1.3 15 92-106 6-20 (186)
275 3dm5_A SRP54, signal recogniti 45.8 18 0.00061 36.7 4.6 18 90-107 100-117 (443)
276 2rhm_A Putative kinase; P-loop 45.8 5.7 0.0002 34.4 0.8 17 91-107 6-22 (193)
277 3rc3_A ATP-dependent RNA helic 45.5 5.9 0.0002 42.6 1.0 47 85-134 152-202 (677)
278 1yks_A Genome polyprotein [con 45.5 6.3 0.00022 39.8 1.2 21 85-107 5-25 (440)
279 1v5w_A DMC1, meiotic recombina 45.2 11 0.00037 36.6 2.8 29 79-107 108-139 (343)
280 3lay_A Zinc resistance-associa 44.9 40 0.0014 29.5 6.1 22 398-419 113-134 (175)
281 1tev_A UMP-CMP kinase; ploop, 44.8 7 0.00024 33.7 1.2 16 91-106 4-19 (196)
282 1htw_A HI0065; nucleotide-bind 44.7 17 0.00058 31.1 3.7 17 91-107 34-50 (158)
283 2r2a_A Uncharacterized protein 44.1 6.7 0.00023 35.1 1.0 16 92-107 7-22 (199)
284 1e6c_A Shikimate kinase; phosp 43.7 6.9 0.00024 33.2 1.0 16 92-107 4-19 (173)
285 2i1q_A DNA repair and recombin 43.6 11 0.00038 36.0 2.6 30 78-107 83-115 (322)
286 3crm_A TRNA delta(2)-isopenten 43.6 8.8 0.0003 37.3 1.8 16 91-106 6-21 (323)
287 1svm_A Large T antigen; AAA+ f 43.6 11 0.00039 37.3 2.7 17 91-107 170-186 (377)
288 1knq_A Gluconate kinase; ALFA/ 43.5 7.8 0.00027 33.1 1.3 17 91-107 9-25 (175)
289 1uf9_A TT1252 protein; P-loop, 43.3 8.5 0.00029 33.5 1.6 20 87-106 5-24 (203)
290 3m6a_A ATP-dependent protease 43.1 6.3 0.00022 41.1 0.8 39 69-107 85-125 (543)
291 2fna_A Conserved hypothetical 42.6 7.4 0.00025 37.1 1.1 17 91-107 31-47 (357)
292 1nks_A Adenylate kinase; therm 42.5 7 0.00024 33.7 0.8 16 92-107 3-18 (194)
293 2zj8_A DNA helicase, putative 42.4 6.9 0.00024 42.1 0.9 21 85-107 36-56 (720)
294 2qmh_A HPR kinase/phosphorylas 42.3 8.2 0.00028 34.9 1.3 21 87-107 31-51 (205)
295 1via_A Shikimate kinase; struc 42.2 7.7 0.00026 33.2 1.1 15 92-106 6-20 (175)
296 1w4r_A Thymidine kinase; type 42.1 9.6 0.00033 34.2 1.7 24 81-104 11-34 (195)
297 3t5d_A Septin-7; GTP-binding p 42.1 6.7 0.00023 36.6 0.7 22 86-107 4-25 (274)
298 2iyv_A Shikimate kinase, SK; t 42.1 7.6 0.00026 33.5 1.0 15 92-106 4-18 (184)
299 2z43_A DNA repair and recombin 42.0 11 0.00037 36.2 2.2 29 79-107 93-124 (324)
300 2xgj_A ATP-dependent RNA helic 42.0 11 0.00036 42.6 2.4 21 84-106 97-117 (1010)
301 3crv_A XPD/RAD3 related DNA he 41.7 13 0.00043 38.7 2.8 33 69-107 7-39 (551)
302 3t61_A Gluconokinase; PSI-biol 41.7 7.9 0.00027 34.0 1.1 17 91-107 19-35 (202)
303 3ol1_A Vimentin; structural ge 41.6 91 0.0031 25.3 7.5 13 420-432 87-99 (119)
304 3l9o_A ATP-dependent RNA helic 41.6 9.8 0.00034 43.3 2.1 24 81-106 192-215 (1108)
305 4ddu_A Reverse gyrase; topoiso 41.6 11 0.00039 42.7 2.6 24 81-106 86-109 (1104)
306 2p6r_A Afuhel308 helicase; pro 41.5 7 0.00024 41.9 0.8 30 68-107 28-57 (702)
307 2vli_A Antibiotic resistance p 41.4 8.5 0.00029 33.0 1.2 16 91-106 6-21 (183)
308 2pt5_A Shikimate kinase, SK; a 41.3 8.8 0.0003 32.4 1.3 15 92-106 2-16 (168)
309 1j8m_F SRP54, signal recogniti 41.0 25 0.00086 33.4 4.6 16 92-107 100-115 (297)
310 2iut_A DNA translocase FTSK; n 41.0 6.6 0.00023 41.2 0.5 17 91-107 215-231 (574)
311 2eyq_A TRCF, transcription-rep 40.7 18 0.00061 41.3 4.0 26 81-106 615-640 (1151)
312 2bbw_A Adenylate kinase 4, AK4 40.7 7.4 0.00025 35.6 0.7 17 91-107 28-44 (246)
313 4eun_A Thermoresistant glucoki 40.5 7.7 0.00026 34.2 0.8 16 92-107 31-46 (200)
314 1pzn_A RAD51, DNA repair and r 40.4 15 0.00052 35.8 3.0 29 79-107 117-148 (349)
315 2bwj_A Adenylate kinase 5; pho 40.4 8.3 0.00028 33.5 1.0 15 92-106 14-28 (199)
316 1g41_A Heat shock protein HSLU 40.3 8.1 0.00028 39.3 1.0 16 91-106 51-66 (444)
317 2va8_A SSO2462, SKI2-type heli 40.3 11 0.00037 40.4 2.1 20 86-107 44-63 (715)
318 2xau_A PRE-mRNA-splicing facto 40.3 10 0.00035 41.3 1.9 24 82-106 102-125 (773)
319 3a8t_A Adenylate isopentenyltr 40.0 9.7 0.00033 37.2 1.5 16 91-106 41-56 (339)
320 3k1j_A LON protease, ATP-depen 40.0 12 0.00041 39.4 2.4 26 80-107 52-77 (604)
321 3asz_A Uridine kinase; cytidin 39.9 7.3 0.00025 34.4 0.5 16 92-107 8-23 (211)
322 1s96_A Guanylate kinase, GMP k 39.9 7.9 0.00027 35.1 0.8 16 92-107 18-33 (219)
323 2qag_A Septin-2, protein NEDD5 39.9 7.9 0.00027 38.0 0.8 24 84-107 31-54 (361)
324 3a4m_A L-seryl-tRNA(SEC) kinas 39.7 9.2 0.00031 35.4 1.2 17 91-107 5-21 (260)
325 2gno_A DNA polymerase III, gam 39.7 11 0.00039 36.0 1.9 28 80-107 8-35 (305)
326 2vhj_A Ntpase P4, P4; non- hyd 39.7 10 0.00035 36.9 1.5 17 91-107 124-140 (331)
327 1ukz_A Uridylate kinase; trans 39.4 9.6 0.00033 33.4 1.3 16 91-106 16-31 (203)
328 3ol1_A Vimentin; structural ge 39.3 1.5E+02 0.0052 23.9 8.8 13 414-426 88-100 (119)
329 1xjc_A MOBB protein homolog; s 39.1 8.2 0.00028 33.7 0.7 16 92-107 6-21 (169)
330 1zd8_A GTP:AMP phosphotransfer 39.1 8.2 0.00028 34.7 0.8 16 92-107 9-24 (227)
331 1aky_A Adenylate kinase; ATP:A 39.0 8.9 0.00031 34.2 1.0 15 92-106 6-20 (220)
332 3foz_A TRNA delta(2)-isopenten 39.0 10 0.00036 36.6 1.5 16 91-106 11-26 (316)
333 3sr0_A Adenylate kinase; phosp 38.9 9.1 0.00031 34.4 1.0 13 93-105 3-15 (206)
334 2yvu_A Probable adenylyl-sulfa 38.8 11 0.00037 32.6 1.5 18 90-107 13-30 (186)
335 3tif_A Uncharacterized ABC tra 38.8 8.4 0.00029 35.3 0.8 16 92-107 33-48 (235)
336 1moz_A ARL1, ADP-ribosylation 38.7 11 0.00038 31.9 1.5 27 81-107 8-35 (183)
337 3umf_A Adenylate kinase; rossm 38.7 9.2 0.00031 34.8 1.0 14 92-105 31-44 (217)
338 3tnu_A Keratin, type I cytoske 38.7 1.6E+02 0.0055 24.1 8.8 15 351-365 40-54 (131)
339 3fb4_A Adenylate kinase; psych 38.7 9.2 0.00031 33.9 1.0 14 93-106 3-16 (216)
340 1pjr_A PCRA; DNA repair, DNA r 38.5 8.1 0.00028 41.8 0.7 21 89-109 23-43 (724)
341 1qf9_A UMP/CMP kinase, protein 38.4 8.7 0.0003 33.0 0.8 15 92-106 8-22 (194)
342 1zu4_A FTSY; GTPase, signal re 38.3 8.5 0.00029 37.2 0.8 16 92-107 107-122 (320)
343 2ius_A DNA translocase FTSK; n 38.1 7.8 0.00027 40.1 0.5 16 92-107 169-184 (512)
344 2w00_A HSDR, R.ECOR124I; ATP-b 38.0 8.8 0.0003 43.3 0.9 16 93-108 303-318 (1038)
345 3vem_A Helicase protein MOM1; 38.0 1.6E+02 0.0054 23.7 10.9 33 404-436 67-99 (115)
346 1m1j_A Fibrinogen alpha subuni 37.8 3.2E+02 0.011 27.4 11.9 14 353-366 62-75 (491)
347 2c95_A Adenylate kinase 1; tra 37.7 9.7 0.00033 32.9 1.0 15 92-106 11-25 (196)
348 2zr9_A Protein RECA, recombina 37.7 14 0.00048 36.1 2.3 29 79-107 46-78 (349)
349 3exa_A TRNA delta(2)-isopenten 37.6 11 0.00036 36.7 1.3 15 92-106 5-19 (322)
350 1cr0_A DNA primase/helicase; R 37.2 8.9 0.00031 36.1 0.7 27 81-107 24-52 (296)
351 3ney_A 55 kDa erythrocyte memb 37.1 9.2 0.00031 34.3 0.7 16 92-107 21-36 (197)
352 3dl0_A Adenylate kinase; phosp 37.1 10 0.00035 33.7 1.0 14 93-106 3-16 (216)
353 1ak2_A Adenylate kinase isoenz 37.0 10 0.00034 34.4 1.0 16 91-106 17-32 (233)
354 1f5n_A Interferon-induced guan 37.0 2.3E+02 0.0079 29.6 11.6 13 95-107 66-78 (592)
355 1c9k_A COBU, adenosylcobinamid 36.8 10 0.00035 33.5 1.0 13 93-105 2-14 (180)
356 2cdn_A Adenylate kinase; phosp 36.7 13 0.00043 32.6 1.6 19 88-106 18-36 (201)
357 3iox_A AGI/II, PA; alpha helix 36.1 3.6E+02 0.012 27.4 13.3 19 347-365 7-25 (497)
358 2jaq_A Deoxyguanosine kinase; 36.1 11 0.00037 32.8 1.1 15 92-106 2-16 (205)
359 1sq5_A Pantothenate kinase; P- 36.0 20 0.0007 34.0 3.1 17 91-107 81-97 (308)
360 3qks_A DNA double-strand break 35.9 11 0.00037 33.6 1.0 16 92-107 25-40 (203)
361 2d7d_A Uvrabc system protein B 35.9 25 0.00087 37.4 4.1 41 64-109 11-51 (661)
362 2pbr_A DTMP kinase, thymidylat 35.8 11 0.00038 32.4 1.1 15 92-106 2-16 (195)
363 1zuh_A Shikimate kinase; alpha 35.5 12 0.00041 31.6 1.2 15 92-106 9-23 (168)
364 3o8b_A HCV NS3 protease/helica 35.4 15 0.00051 39.3 2.1 17 92-108 234-250 (666)
365 3vem_A Helicase protein MOM1; 35.3 1.7E+02 0.006 23.5 9.3 23 413-435 65-87 (115)
366 3aez_A Pantothenate kinase; tr 35.0 10 0.00036 36.4 0.8 17 91-107 91-107 (312)
367 1ypw_A Transitional endoplasmi 34.8 9.6 0.00033 41.8 0.6 17 91-107 239-255 (806)
368 2plr_A DTMP kinase, probable t 34.8 11 0.00039 32.8 1.0 17 91-107 5-21 (213)
369 2if2_A Dephospho-COA kinase; a 34.8 11 0.00036 33.1 0.8 15 92-106 3-17 (204)
370 2v3c_C SRP54, signal recogniti 34.6 12 0.0004 37.9 1.1 16 92-107 101-116 (432)
371 2whx_A Serine protease/ntpase/ 34.5 12 0.0004 39.7 1.2 23 82-106 180-202 (618)
372 3hr8_A Protein RECA; alpha and 34.3 16 0.00056 35.8 2.1 29 79-107 46-78 (356)
373 1zak_A Adenylate kinase; ATP:A 34.3 11 0.00038 33.7 0.8 16 92-107 7-22 (222)
374 3tqc_A Pantothenate kinase; bi 34.0 22 0.00077 34.3 3.0 16 92-107 94-109 (321)
375 1ex7_A Guanylate kinase; subst 33.9 12 0.00042 33.1 1.0 15 93-107 4-18 (186)
376 1jjv_A Dephospho-COA kinase; P 33.8 14 0.00046 32.5 1.3 16 92-107 4-19 (206)
377 1cke_A CK, MSSA, protein (cyti 33.8 13 0.00045 33.0 1.2 17 91-107 6-22 (227)
378 3f9v_A Minichromosome maintena 33.7 13 0.00044 39.2 1.3 17 92-108 329-345 (595)
379 2ged_A SR-beta, signal recogni 33.7 11 0.00039 32.3 0.7 19 89-107 47-65 (193)
380 3auy_A DNA double-strand break 33.6 14 0.00049 36.2 1.5 17 91-107 26-42 (371)
381 4etp_B Spindle POLE BODY-assoc 33.5 1.3E+02 0.0044 28.9 8.0 46 48-99 91-137 (333)
382 1np6_A Molybdopterin-guanine d 33.5 12 0.0004 32.7 0.8 16 92-107 8-23 (174)
383 3qf7_A RAD50; ABC-ATPase, ATPa 33.4 14 0.00049 36.2 1.5 15 93-107 26-40 (365)
384 2v9p_A Replication protein E1; 32.9 12 0.0004 36.0 0.8 17 91-107 127-143 (305)
385 3fgh_A Transcription factor A, 32.7 55 0.0019 23.2 4.3 38 418-455 30-67 (67)
386 3p32_A Probable GTPase RV1496/ 32.7 27 0.00093 33.9 3.4 30 78-107 65-96 (355)
387 1e4v_A Adenylate kinase; trans 32.7 12 0.00042 33.2 0.8 14 93-106 3-16 (214)
388 2ce2_X GTPase HRAS; signaling 32.6 10 0.00035 31.1 0.3 16 92-107 5-20 (166)
389 4a15_A XPD helicase, ATP-depen 32.5 20 0.00067 38.0 2.5 34 68-107 6-39 (620)
390 2pcj_A ABC transporter, lipopr 32.2 12 0.00039 34.1 0.6 15 93-107 33-47 (224)
391 2z0h_A DTMP kinase, thymidylat 32.1 14 0.00047 32.0 1.0 15 93-107 3-17 (197)
392 2onk_A Molybdate/tungstate ABC 31.9 12 0.00043 34.3 0.7 16 92-107 26-41 (240)
393 3be4_A Adenylate kinase; malar 31.9 13 0.00043 33.2 0.8 15 92-106 7-21 (217)
394 1nlf_A Regulatory protein REPA 31.8 12 0.0004 35.0 0.5 17 91-107 31-47 (279)
395 3d3q_A TRNA delta(2)-isopenten 31.6 16 0.00055 35.7 1.5 15 92-106 9-23 (340)
396 3gfo_A Cobalt import ATP-bindi 31.4 13 0.00044 35.1 0.7 15 93-107 37-51 (275)
397 2cbz_A Multidrug resistance-as 31.4 13 0.00044 34.1 0.8 16 92-107 33-48 (237)
398 3tlx_A Adenylate kinase 2; str 31.3 14 0.00048 33.8 1.0 17 90-106 29-45 (243)
399 2pez_A Bifunctional 3'-phospho 31.2 17 0.00059 31.0 1.5 16 92-107 7-22 (179)
400 3u4q_A ATP-dependent helicase/ 31.1 12 0.00042 43.0 0.7 20 90-109 23-42 (1232)
401 2xb4_A Adenylate kinase; ATP-b 31.1 15 0.0005 33.1 1.1 14 93-106 3-16 (223)
402 1u94_A RECA protein, recombina 31.1 23 0.00077 34.7 2.5 29 79-107 48-80 (356)
403 2vl7_A XPD; helicase, unknown 31.0 27 0.00093 36.1 3.2 34 68-107 10-43 (540)
404 1ji0_A ABC transporter; ATP bi 31.0 13 0.00045 34.0 0.8 15 93-107 35-49 (240)
405 1ltq_A Polynucleotide kinase; 31.0 15 0.00052 34.3 1.2 16 91-106 3-18 (301)
406 1sgw_A Putative ABC transporte 30.9 12 0.00042 33.8 0.5 15 93-107 38-52 (214)
407 2qt1_A Nicotinamide riboside k 30.8 15 0.00051 32.3 1.0 16 92-107 23-38 (207)
408 1g6h_A High-affinity branched- 30.7 13 0.00046 34.4 0.8 15 93-107 36-50 (257)
409 3fvq_A Fe(3+) IONS import ATP- 30.6 12 0.00043 36.7 0.5 15 93-107 33-47 (359)
410 2yyz_A Sugar ABC transporter, 30.6 13 0.00046 36.5 0.8 15 93-107 32-46 (359)
411 3rlf_A Maltose/maltodextrin im 30.2 14 0.00047 36.8 0.7 15 93-107 32-46 (381)
412 2yz2_A Putative ABC transporte 30.2 14 0.00047 34.5 0.8 16 92-107 35-50 (266)
413 2grj_A Dephospho-COA kinase; T 30.1 17 0.00059 32.1 1.3 17 90-106 12-28 (192)
414 2ff7_A Alpha-hemolysin translo 30.0 14 0.00048 34.1 0.8 15 93-107 38-52 (247)
415 1b0u_A Histidine permease; ABC 30.0 14 0.00048 34.4 0.7 15 93-107 35-49 (262)
416 1z63_A Helicase of the SNF2/RA 30.0 23 0.0008 35.7 2.5 20 87-108 55-74 (500)
417 3oja_A Leucine-rich immune mol 30.0 4.2E+02 0.014 26.3 12.2 10 225-234 215-224 (487)
418 3cf2_A TER ATPase, transitiona 29.9 13 0.00043 40.8 0.5 44 91-134 512-569 (806)
419 1vht_A Dephospho-COA kinase; s 29.9 17 0.00058 32.2 1.3 16 91-106 5-20 (218)
420 1z47_A CYSA, putative ABC-tran 29.9 14 0.00048 36.3 0.8 15 93-107 44-58 (355)
421 2ghi_A Transport protein; mult 29.8 14 0.00049 34.3 0.8 16 92-107 48-63 (260)
422 1mv5_A LMRA, multidrug resista 29.8 16 0.00053 33.6 1.0 16 92-107 30-45 (243)
423 1m1j_A Fibrinogen alpha subuni 29.7 2.7E+02 0.0091 28.0 9.8 14 349-362 65-78 (491)
424 2wwf_A Thymidilate kinase, put 29.7 15 0.0005 32.3 0.8 17 91-107 11-27 (212)
425 1m7g_A Adenylylsulfate kinase; 29.6 19 0.00065 31.8 1.6 17 91-107 26-42 (211)
426 2jeo_A Uridine-cytidine kinase 29.3 15 0.0005 33.5 0.8 16 92-107 27-42 (245)
427 2it1_A 362AA long hypothetical 29.3 14 0.00049 36.3 0.7 15 93-107 32-46 (362)
428 1g29_1 MALK, maltose transport 29.3 15 0.0005 36.4 0.8 15 93-107 32-46 (372)
429 2zts_A Putative uncharacterize 29.2 19 0.00065 32.3 1.5 25 82-106 19-46 (251)
430 4g1u_C Hemin import ATP-bindin 29.1 15 0.00051 34.4 0.8 15 93-107 40-54 (266)
431 2olj_A Amino acid ABC transpor 28.9 15 0.00051 34.3 0.7 16 92-107 52-67 (263)
432 2v54_A DTMP kinase, thymidylat 28.8 17 0.00057 31.7 1.0 16 92-107 6-21 (204)
433 1nrj_B SR-beta, signal recogni 28.8 17 0.00057 32.0 1.0 21 87-107 9-29 (218)
434 2wsm_A Hydrogenase expression/ 28.7 26 0.00088 30.8 2.3 19 89-107 29-47 (221)
435 2o5v_A DNA replication and rep 28.7 17 0.00057 35.8 1.0 16 92-107 28-43 (359)
436 1vpl_A ABC transporter, ATP-bi 28.5 15 0.00053 34.1 0.7 15 93-107 44-58 (256)
437 2dyk_A GTP-binding protein; GT 28.5 19 0.00064 29.5 1.2 16 92-107 3-18 (161)
438 2pze_A Cystic fibrosis transme 28.3 16 0.00053 33.3 0.7 15 93-107 37-51 (229)
439 3dmq_A RNA polymerase-associat 28.3 20 0.0007 40.0 1.8 26 82-107 162-187 (968)
440 1v43_A Sugar-binding transport 28.3 15 0.00053 36.2 0.7 15 93-107 40-54 (372)
441 3qkt_A DNA double-strand break 28.2 17 0.00058 35.1 1.0 15 93-107 26-40 (339)
442 3bh0_A DNAB-like replicative h 28.2 31 0.0011 32.9 2.9 28 79-106 55-84 (315)
443 2nq2_C Hypothetical ABC transp 28.1 16 0.00054 33.9 0.7 15 93-107 34-48 (253)
444 4dzn_A Coiled-coil peptide CC- 27.9 99 0.0034 18.3 3.9 17 351-367 4-20 (33)
445 1xp8_A RECA protein, recombina 27.9 22 0.00075 35.0 1.8 30 78-107 58-91 (366)
446 3lda_A DNA repair protein RAD5 27.8 22 0.00074 35.5 1.7 30 79-108 164-196 (400)
447 2zu0_C Probable ATP-dependent 27.7 16 0.00055 34.1 0.7 16 92-107 48-63 (267)
448 2ihy_A ABC transporter, ATP-bi 27.5 16 0.00056 34.4 0.7 15 93-107 50-64 (279)
449 2pjz_A Hypothetical protein ST 27.5 16 0.00056 34.1 0.7 16 92-107 32-47 (263)
450 2d2e_A SUFC protein; ABC-ATPas 27.4 17 0.00057 33.6 0.8 15 93-107 32-46 (250)
451 2f9l_A RAB11B, member RAS onco 27.3 16 0.00056 31.7 0.7 18 90-107 5-22 (199)
452 2qi9_C Vitamin B12 import ATP- 27.3 17 0.00057 33.7 0.7 15 93-107 29-43 (249)
453 1g5t_A COB(I)alamin adenosyltr 27.3 12 0.0004 33.6 -0.4 20 90-109 28-47 (196)
454 2ixe_A Antigen peptide transpo 27.2 17 0.00057 34.1 0.8 15 93-107 48-62 (271)
455 2j37_W Signal recognition part 27.2 52 0.0018 33.8 4.5 16 92-107 103-118 (504)
456 3tnu_A Keratin, type I cytoske 27.2 2.5E+02 0.0087 22.8 8.7 22 351-372 33-54 (131)
457 2wv9_A Flavivirin protease NS2 27.2 19 0.00064 38.6 1.2 18 87-106 240-257 (673)
458 1nn5_A Similar to deoxythymidy 27.1 17 0.00059 31.8 0.8 16 92-107 11-26 (215)
459 1zj6_A ADP-ribosylation factor 26.9 44 0.0015 28.3 3.5 23 85-107 11-33 (187)
460 3r2p_A Apolipoprotein A-I; amp 26.9 1.2E+02 0.0041 26.4 6.4 100 348-449 81-184 (185)
461 2obl_A ESCN; ATPase, hydrolase 26.9 21 0.00071 34.9 1.4 28 80-107 60-88 (347)
462 3io5_A Recombination and repai 26.9 32 0.0011 33.4 2.7 28 79-106 11-44 (333)
463 3ake_A Cytidylate kinase; CMP 26.8 21 0.00071 31.1 1.3 15 92-106 4-18 (208)
464 2v71_A Nuclear distribution pr 26.7 3.3E+02 0.011 24.0 9.8 16 352-367 20-35 (189)
465 2f1r_A Molybdopterin-guanine d 26.6 8.2 0.00028 33.6 -1.5 16 92-107 4-19 (171)
466 3s84_A Apolipoprotein A-IV; fo 26.5 3.9E+02 0.013 24.8 11.0 11 355-365 43-53 (273)
467 1z2a_A RAS-related protein RAB 26.4 22 0.00074 29.3 1.3 18 90-107 5-22 (168)
468 2eqz_A High mobility group pro 26.3 56 0.0019 24.5 3.5 38 418-455 49-86 (86)
469 3vkw_A Replicase large subunit 26.2 16 0.00053 37.2 0.3 19 92-110 163-181 (446)
470 4e22_A Cytidylate kinase; P-lo 25.8 18 0.00063 33.2 0.7 17 91-107 28-44 (252)
471 1tf7_A KAIC; homohexamer, hexa 25.8 18 0.00062 37.3 0.7 28 80-107 26-56 (525)
472 2r6a_A DNAB helicase, replicat 25.7 36 0.0012 34.3 3.0 28 80-107 191-220 (454)
473 3r20_A Cytidylate kinase; stru 25.5 22 0.00076 32.6 1.2 17 91-107 10-26 (233)
474 1e69_A Chromosome segregation 25.5 27 0.00092 33.3 1.9 16 92-107 26-41 (322)
475 2j9r_A Thymidine kinase; TK1, 25.4 16 0.00053 33.3 0.1 18 92-109 30-47 (214)
476 3eph_A TRNA isopentenyltransfe 25.4 20 0.0007 35.9 1.0 15 92-106 4-18 (409)
477 3tnu_B Keratin, type II cytosk 25.3 2.7E+02 0.0093 22.5 9.6 17 350-366 37-53 (129)
478 1f6b_A SAR1; gtpases, N-termin 25.2 25 0.00086 30.5 1.5 27 81-107 15-42 (198)
479 2xtp_A GTPase IMAP family memb 24.9 20 0.0007 32.7 0.9 19 89-107 21-39 (260)
480 3d31_A Sulfate/molybdate ABC t 24.9 13 0.00044 36.4 -0.6 16 92-107 28-43 (348)
481 1u8z_A RAS-related protein RAL 24.8 24 0.00082 28.9 1.3 17 91-107 5-21 (168)
482 1ksh_A ARF-like protein 2; sma 24.8 30 0.001 29.3 1.9 20 88-107 16-35 (186)
483 1pui_A ENGB, probable GTP-bind 24.8 18 0.00063 31.4 0.5 16 92-107 28-43 (210)
484 1uj2_A Uridine-cytidine kinase 24.8 23 0.0008 32.3 1.3 16 91-106 23-38 (252)
485 1ky3_A GTP-binding protein YPT 24.7 24 0.00082 29.5 1.2 18 90-107 8-25 (182)
486 2lkc_A Translation initiation 24.7 19 0.00064 30.2 0.5 17 91-107 9-25 (178)
487 3zvl_A Bifunctional polynucleo 24.6 23 0.00079 35.3 1.2 19 88-106 256-274 (416)
488 1svi_A GTP-binding protein YSX 24.5 17 0.00058 31.1 0.2 17 91-107 24-40 (195)
489 3gd7_A Fusion complex of cysti 24.4 19 0.00064 35.9 0.5 15 93-107 50-64 (390)
490 1ls1_A Signal recognition part 24.4 20 0.00069 34.0 0.7 16 92-107 100-115 (295)
491 1ek0_A Protein (GTP-binding pr 24.3 25 0.00085 28.9 1.3 16 92-107 5-20 (170)
492 2q6t_A DNAB replication FORK h 24.2 37 0.0013 34.0 2.8 28 80-107 188-217 (444)
493 3lxx_A GTPase IMAP family memb 24.1 19 0.00066 32.4 0.5 19 89-107 28-46 (239)
494 1i84_S Smooth muscle myosin he 24.1 98 0.0034 35.3 6.5 20 348-367 856-875 (1184)
495 2hf9_A Probable hydrogenase ni 24.0 41 0.0014 29.6 2.7 20 88-107 36-55 (226)
496 2qm8_A GTPase/ATPase; G protei 23.9 40 0.0014 32.5 2.8 28 80-107 43-72 (337)
497 2ffh_A Protein (FFH); SRP54, s 23.9 62 0.0021 32.4 4.3 16 92-107 100-115 (425)
498 1z0j_A RAB-22, RAS-related pro 23.9 25 0.00087 28.9 1.2 17 91-107 7-23 (170)
499 3pqc_A Probable GTP-binding pr 23.8 18 0.00061 30.8 0.2 15 93-107 26-40 (195)
500 3lay_A Zinc resistance-associa 23.8 2.8E+02 0.0094 24.1 7.9 74 347-420 69-142 (175)
No 1
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=100.00 E-value=2e-89 Score=692.30 Aligned_cols=341 Identities=77% Similarity=1.126 Sum_probs=275.8
Q ss_pred CCCcEEEEEcCCCCccccccCCceEEEEcCCeEEEECCCCCCCCCCCCceeecceeecCC-CCCCCCCCCHHHHHHHHHH
Q psy7270 1 MSSVKVAVRVRPFNNREISRDCKSIIEMTGNTTVIINPKLPPESKDTHKNFNFDYSYYSH-DPSASNFATQAMVYSDIGE 79 (459)
Q Consensus 1 m~~vkV~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~f~FD~vf~~~-d~~~~~~~sQ~~vy~~~~~ 79 (459)
|++|+|+|||||++..|...+..+++.+.++.+++.++... ....+.|.||+||+++ ++...++++|++||+.++.
T Consensus 3 ~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~i~~~~~~---~~~~~~f~FD~vf~~~~~~~~~~~asQ~~Vy~~~~~ 79 (366)
T 2zfi_A 3 GASVKVAVRVRPFNSREMSRDSKCIIQMSGSTTTIVNPKQP---KETPKSFSFDYSYWSHTSPEDINYASQKQVYRDIGE 79 (366)
T ss_dssp -CCEEEEEEECCCCHHHHHTTCCBCEEEETTEEEECCTTCT---TSCCEEEECSEEEECSSCTTSSSCCCHHHHHHHTHH
T ss_pred CCCcEEEEECCCCChhhccCCCCeEEEECCCcEEEeccCCC---CCCceEEecceEeecCccccccccCcHHHHHHHHHH
Confidence 57999999999999999988889999999998888766432 2346899999999986 3344456899999999999
Q ss_pred HHHHHhhcCCceEEEeecCCCCCcceeeccCCCCCCCCChHHHHHHHHHHHHhhccCCc----------------ceecc
Q psy7270 80 EMLEHAFEGYNVCIFAYGQTGAGKSYTMMGRQEVEGEEGIIPMICQDLFKRIKDTTNDK----------------LKSRW 143 (459)
Q Consensus 80 plv~~~l~G~n~ti~aYGqTgSGKT~Tm~G~~~~~~~~Giipr~~~~lF~~i~~~~~~~----------------~~~~~ 143 (459)
|+|+++++|||+||||||||||||||||+|+.. ...+|||||++++||+.+.+..... +.++.
T Consensus 80 plv~~~l~G~N~tifAYGqTGSGKTyTm~G~~~-~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~v~DLL 158 (366)
T 2zfi_A 80 EMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQE-KDQQGIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLL 158 (366)
T ss_dssp HHHHHHHTTCCEEEEEECSTTSSHHHHHTBCSG-GGCBCHHHHHHHHHHHHHHTCCCTTEEEEEEEEEEEEETTEEEETT
T ss_pred HHHHHHhcCCeeEEEEeCCCCCCCceEeeCCCc-cCCCccHHHHHHHHHHHHhhcccCCeeEEEEEEEEEeeCCeEEEcc
Confidence 999999999999999999999999999999754 2468999999999999998654322 11222
Q ss_pred ---cCCcceEeeeCCCCceecCCccccccCHHHHHHHHHHHhhccccccccCCCCCCCceEEEEEEEEEeeecCCCCccc
Q psy7270 144 ---KNSNLRVREHPLLGPYVEDLSKLAVTCYRDIHDLIDEGNKARTVAATNMNETSSRSHAVFTIFFTQQAVDDMTDLTT 220 (459)
Q Consensus 144 ---~~~~l~i~e~~~~g~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~~~~ 220 (459)
....+.+++++..|++|.||+++.|.+++|++.+|..|.++|.+++|.+|..|||||+||+|+|.+...+...+...
T Consensus 159 ~~~~~~~l~ire~~~~g~~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~ 238 (366)
T 2zfi_A 159 NPKNKGNLRVREHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNKPRTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITT 238 (366)
T ss_dssp CTTTCSCBCEEEETTTEEEETTCCCEECCSHHHHHHHHHHHHHHHTSGGGGTTTHHHHSEEEEEEEEEEEEECTTTTCEE
T ss_pred ccccCCCceEEEcCCCCEEEeCCEEEEECCHHHHHHHHHHHhhccccccccCCCCCCcceEEEEEEEEEecccCCCCccc
Confidence 23579999999999999999999999999999999999999999999999999999999999999876655444445
Q ss_pred eeEeceeeeccCCCccccCCCCcccchhhhhhhhHhHHHHHHHHHHHHhhhhhhhhhhhcCCCCCccCCCCcchhhhhhc
Q psy7270 221 EKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEISAVQHVAKKKKKADFIPYRDSVLTWLLREN 300 (459)
Q Consensus 221 ~~~s~L~~VDLAGsEr~~~~~~~g~r~~E~~~IN~SL~~L~~vI~aL~~~~~~~~~~~~~~~~~~ipyRdSkLT~lL~ds 300 (459)
...|+|+|||||||||..++++.|.|++|+.+||+||++||+||.+|++.........+.++..||||||||||+||||+
T Consensus 239 ~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~~~~~~~~~~hvPyRdSkLT~lLqds 318 (366)
T 2zfi_A 239 EKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLREN 318 (366)
T ss_dssp EEEEEEEEEECCCGGGC------CCCHHHHHHHHHHHHHHHHHHHHHHHHC--------------CCGGGSHHHHHTGGG
T ss_pred eeEeEEEEEeCCCCccccccCCCccchhhhhhHhHHHHHHHHHHHHHHhcccccccccccccCCcccccccHHHHHHHHH
Confidence 67899999999999999999999999999999999999999999999975432222223345789999999999999999
Q ss_pred cCCCcceeeeeccCCCCCCHHHHHHHHHHHHHhhcccccceeccc
Q psy7270 301 LGGNSKTAMIAAISPADINYDETLSTLRYADRAKQIVCKAIVNED 345 (459)
Q Consensus 301 LgGns~t~~I~~isp~~~~~~eTlsTL~fa~rak~I~n~~~~n~~ 345 (459)
|||||+|+|||||||+..+++||++||+||+|||+|+|+|+++..
T Consensus 319 LgGnskt~mIa~isP~~~~~~ETlsTLrfA~rak~I~~~~~~~~~ 363 (366)
T 2zfi_A 319 LGGNSRTAMVAALSPADINYDETLSTLRYADRAKQIRNTVSVNHH 363 (366)
T ss_dssp SSTTCEEEEEEEECCBGGGHHHHHHHHHHHHHTC-----------
T ss_pred hCCCceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccCCCCCCCC
Confidence 999999999999999999999999999999999999999998753
No 2
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=100.00 E-value=2e-89 Score=691.05 Aligned_cols=333 Identities=43% Similarity=0.671 Sum_probs=271.7
Q ss_pred CCcEEEEEcCCCCccccccCCceEEEEcC--CeEEEECCCCCCCCCCCCceeecceeecCCCCCCCCCCCHHHHHHHHHH
Q psy7270 2 SSVKVAVRVRPFNNREISRDCKSIIEMTG--NTTVIINPKLPPESKDTHKNFNFDYSYYSHDPSASNFATQAMVYSDIGE 79 (459)
Q Consensus 2 ~~vkV~vRvRP~~~~E~~~~~~~~v~~~~--~~~~~~~~~~~~~~~~~~~~f~FD~vf~~~d~~~~~~~sQ~~vy~~~~~ 79 (459)
++|+|+|||||++..|...++..++.+.. +.+.+.++... .....+.|.||+||++. ++|++||+.++.
T Consensus 21 ~~irV~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~v~~~~~~--~~~~~~~F~FD~Vf~~~-------~~Q~~Vy~~~~~ 91 (372)
T 3b6u_A 21 ESVRVVVRCRPMNGKEKAASYDKVVDVDVKLGQVSVKNPKGT--AHEMPKTFTFDAVYDWN-------AKQFELYDETFR 91 (372)
T ss_dssp CBCEEEEEECCCCHHHHHTTCCBCEEEETTTTEEEECCTTCT--TTCCCEEEECSEEECTT-------CCHHHHHHHTHH
T ss_pred CCeEEEEEcCCCChhhhccCCceEEEEeCCCCEEEEECCCCC--CCCCceEEEcCeEeCCc-------CchHHHHHHHHH
Confidence 58999999999999999888888877754 45555544321 23446899999999765 899999999999
Q ss_pred HHHHHhhcCCceEEEeecCCCCCcceeeccCCCCCCCCChHHHHHHHHHHHHhhccCCc--------------ceecc--
Q psy7270 80 EMLEHAFEGYNVCIFAYGQTGAGKSYTMMGRQEVEGEEGIIPMICQDLFKRIKDTTNDK--------------LKSRW-- 143 (459)
Q Consensus 80 plv~~~l~G~n~ti~aYGqTgSGKT~Tm~G~~~~~~~~Giipr~~~~lF~~i~~~~~~~--------------~~~~~-- 143 (459)
|+|+++++|||+||||||||||||||||+|....+..+|||||++++||..+....... +.++.
T Consensus 92 plv~~~l~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~v~vS~~EIYnE~i~DLL~~ 171 (372)
T 3b6u_A 92 PLVDSVLQGFNGTIFAYGQTGTGKTYTMEGIRGDPEKRGVIPNSFDHIFTHISRSQNQQYLVRASYLEIYQEEIRDLLSK 171 (372)
T ss_dssp HHHHHHHTTCCEEEEEEESTTSSHHHHHTBCTTSGGGBCHHHHHHHHHHHHHHTCSSCEEEEEEEEEEEETTEEEETTSS
T ss_pred HHHHHHhCCCeeeEEeecCCCCCCCEeEecCCCCcccCCcHHHHHHHHHHHhhhccCCceEEEEEEEEEeCCEEEECCCC
Confidence 99999999999999999999999999999987666678999999999999998644322 12222
Q ss_pred -cCCcceEeeeCCCCceecCCccccccCHHHHHHHHHHHhhccccccccCCCCCCCceEEEEEEEEEeeecCCCCcccee
Q psy7270 144 -KNSNLRVREHPLLGPYVEDLSKLAVTCYRDIHDLIDEGNKARTVAATNMNETSSRSHAVFTIFFTQQAVDDMTDLTTEK 222 (459)
Q Consensus 144 -~~~~l~i~e~~~~g~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~~~~~~ 222 (459)
....+.+++++.+|++|.||+++.|.+++|++.+|..|.++|.+++|.+|..|||||+||+|+|.+..... .+.....
T Consensus 172 ~~~~~l~i~e~~~~~v~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~-~~~~~~~ 250 (372)
T 3b6u_A 172 DQTKRLELKERPDTGVYVKDLSSFVTKSVKEIEHVMNVGNQNRSVGATNMNEHSSRSHAIFVITIECSEVGL-DGENHIR 250 (372)
T ss_dssp CTTCCBCEEEETTTEEEETTCCCEECCSHHHHHHHHHHHHHHHTTTCSSHHHHHHTSEEEEEEEEEEEC------CCCEE
T ss_pred CCCCCceEEECCCCcEecCCCEEEEecCHHHHHHHHHHHHHhcCcccccCCCCCCcceEEEEEEEEEeecCC-CCCcceE
Confidence 23578999999999999999999999999999999999999999999999999999999999999865322 1223456
Q ss_pred EeceeeeccCCCccccCCCCcccchhhhhhhhHhHHHHHHHHHHHHhhhhhhhhhhhcCCCCCccCCCCcchhhhhhccC
Q psy7270 223 VSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEISAVQHVAKKKKKADFIPYRDSVLTWLLRENLG 302 (459)
Q Consensus 223 ~s~L~~VDLAGsEr~~~~~~~g~r~~E~~~IN~SL~~L~~vI~aL~~~~~~~~~~~~~~~~~~ipyRdSkLT~lL~dsLg 302 (459)
.|+|+|||||||||..++++.|.|++|+.+||+||++||+||.+|++. +..||||||||||+||||+||
T Consensus 251 ~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~-----------~~~hvPyRdSkLT~lLqdsLg 319 (372)
T 3b6u_A 251 VGKLNLVDLAGSERQAKTGAQGERLKEATKINLSLSALGNVISALVDG-----------KSTHIPYRDSKLTRLLQDSLG 319 (372)
T ss_dssp EEEEEEEECCCCCE----------EEEGGGCCHHHHHHHHHHHHHHCC--------------CCCGGGSHHHHHTTTTTT
T ss_pred EEEEEEEECCCCccccccCcchhhhhhHhhhhhhHHHHHHHHHHHhcC-----------CCCCCcccccHHHHHHHHhcC
Confidence 799999999999999999999999999999999999999999999863 456999999999999999999
Q ss_pred CCcceeeeeccCCCCCCHHHHHHHHHHHHHhhcccccceecccchHHHHHHHH
Q psy7270 303 GNSKTAMIAAISPADINYDETLSTLRYADRAKQIVCKAIVNEDANAKLIRELK 355 (459)
Q Consensus 303 Gns~t~~I~~isp~~~~~~eTlsTL~fa~rak~I~n~~~~n~~~~~~~i~~l~ 355 (459)
|||+|+|||||||+..+++||++||+||+|||+|+|+|++|+++.++++++|+
T Consensus 320 Gnskt~mIa~vsP~~~~~~ETlsTLrfA~rak~I~n~~~~n~~~~~~~~~~~~ 372 (372)
T 3b6u_A 320 GNAKTVMVANVGPASYNVEETLTTLRYANRAKNIKNKPRVNEDPKDALLREFQ 372 (372)
T ss_dssp SSSEEEEEEEECCBGGGHHHHHHHHHHHHHHTTCBCCCCCCC-----------
T ss_pred CCccEEEEEEeCCcccCHHHHHHHHHHHHHHhhccccceecCChHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999988888764
No 3
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=100.00 E-value=1.8e-88 Score=683.91 Aligned_cols=331 Identities=40% Similarity=0.595 Sum_probs=268.8
Q ss_pred CCcEEEEEcCCCCccccccCCceEEEEcC---CeEEEECCCCCCCCCCCCceeecceeecCCCCCCCCCCCHHHHHHHHH
Q psy7270 2 SSVKVAVRVRPFNNREISRDCKSIIEMTG---NTTVIINPKLPPESKDTHKNFNFDYSYYSHDPSASNFATQAMVYSDIG 78 (459)
Q Consensus 2 ~~vkV~vRvRP~~~~E~~~~~~~~v~~~~---~~~~~~~~~~~~~~~~~~~~f~FD~vf~~~d~~~~~~~sQ~~vy~~~~ 78 (459)
++|+|+|||||+++.|...+...++.+.+ ...+.+. .+.|.||+||++. ++|++||+.++
T Consensus 11 ~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~i~~~----------~~~f~FD~Vf~~~-------~~Q~~Vy~~~~ 73 (365)
T 2y65_A 11 DSIKVVCRFRPLNDSEEKAGSKFVVKFPNNVEENCISIA----------GKVYLFDKVFKPN-------ASQEKVYNEAA 73 (365)
T ss_dssp EECEEEEEECCCCHHHHHTTCCBCEECCSSSTTCEEEET----------TEEEECSEEECTT-------CCHHHHHHHHT
T ss_pred CCeEEEEEcCcCChhHhccCCceEEEeCCCCCCcEEEEC----------CEEEeCceEecCC-------CCHHHHHHHhh
Confidence 47999999999999998888877777654 2333321 3689999999765 89999999999
Q ss_pred HHHHHHhhcCCceEEEeecCCCCCcceeeccCCCCCCCCChHHHHHHHHHHHHhhccCC---------------cceec-
Q psy7270 79 EEMLEHAFEGYNVCIFAYGQTGAGKSYTMMGRQEVEGEEGIIPMICQDLFKRIKDTTND---------------KLKSR- 142 (459)
Q Consensus 79 ~plv~~~l~G~n~ti~aYGqTgSGKT~Tm~G~~~~~~~~Giipr~~~~lF~~i~~~~~~---------------~~~~~- 142 (459)
.|+|+++++|||+||||||||||||||||+|...++..+|||||++++||+.+...... .+.++
T Consensus 74 ~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL 153 (365)
T 2y65_A 74 KSIVTDVLAGYNGTIFAYGQTSSGKTHTMEGVIGDSVKQGIIPRIVNDIFNHIYAMEVNLEFHIKVSYYEIYMDKIRDLL 153 (365)
T ss_dssp HHHHHHHHTTCCEEEEEECSTTSSHHHHHTBSTTCTTTBCHHHHHHHHHHHHHHHCCSCEEEEEEEEEEEEETTEEEETT
T ss_pred hhHHHHHhCCCceEEEeecCCCCCCceEEecCCCCcccCChHHHHHHHHHHHHHhccCCceEEEEEEEEEEECCeeeecc
Confidence 99999999999999999999999999999998776678999999999999999754321 11122
Q ss_pred -ccCCcceEeeeCCCCceecCCccccccCHHHHHHHHHHHhhccccccccCCCCCCCceEEEEEEEEEeeecCCCCccce
Q psy7270 143 -WKNSNLRVREHPLLGPYVEDLSKLAVTCYRDIHDLIDEGNKARTVAATNMNETSSRSHAVFTIFFTQQAVDDMTDLTTE 221 (459)
Q Consensus 143 -~~~~~l~i~e~~~~g~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~~~~~ 221 (459)
.....+.+++++.++++|.|++++.|.|++|++.+|..|.++|++++|.+|..|||||+||+|+|.+..... ...
T Consensus 154 ~~~~~~l~i~e~~~~~~~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~----~~~ 229 (365)
T 2y65_A 154 DVSKVNLSVHEDKNRVPYVKGATERFVSSPEDVFEVIEEGKSNRHIAVTNMNEHSSRSHSVFLINVKQENLEN----QKK 229 (365)
T ss_dssp CTTCCSBCEEECSSSCEEETTCCCEEECSHHHHHHHHHHHHHHHTTTCSCHHHHHHTSEEEEEEEEEEEETTT----CCE
T ss_pred cCCcCCceEEECCCCCEEecCCEEEecCCHHHHHHHHHHHHhhcccccccCCCCCCCceEEEEEEEEEEecCC----CCE
Confidence 234578999999999999999999999999999999999999999999999999999999999999875432 334
Q ss_pred eEeceeeeccCCCccccCCCCcccchhhhhhhhHhHHHHHHHHHHHHhhhhhhhhhhhcCCCCCccCCCCcchhhhhhcc
Q psy7270 222 KVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEISAVQHVAKKKKKADFIPYRDSVLTWLLRENL 301 (459)
Q Consensus 222 ~~s~L~~VDLAGsEr~~~~~~~g~r~~E~~~IN~SL~~L~~vI~aL~~~~~~~~~~~~~~~~~~ipyRdSkLT~lL~dsL 301 (459)
..|+|+|||||||||..++++.|.+++|+.+||+||++||+||.+|++. +..||||||||||+||||+|
T Consensus 230 ~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~-----------~~~hvPyRdSkLT~lLqdsL 298 (365)
T 2y65_A 230 LSGKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSALGNVISALADG-----------NKTHIPYRDSKLTRILQESL 298 (365)
T ss_dssp EEEEEEEEECCCCCC----------------CCHHHHHHHHHHHHHHHC-----------CCSCCCGGGCHHHHHTGGGT
T ss_pred eEEEEEEEECCCCCcchhcCCcchhHHHHHHHHHHHHHHHHHHHHHhcC-----------CCCCCccccCHHHHHHHhhc
Confidence 5799999999999999999999999999999999999999999999862 45799999999999999999
Q ss_pred CCCcceeeeeccCCCCCCHHHHHHHHHHHHHhhcccccceecccchH-HHHHHHHHHHHHHHHH
Q psy7270 302 GGNSKTAMIAAISPADINYDETLSTLRYADRAKQIVCKAIVNEDANA-KLIRELKEEIQRLRDL 364 (459)
Q Consensus 302 gGns~t~~I~~isp~~~~~~eTlsTL~fa~rak~I~n~~~~n~~~~~-~~i~~l~~ei~~L~~~ 364 (459)
||||+|+||+||||+..+++||++||+||+|||+|+|+|++|+++.. .+++++++|+++++.+
T Consensus 299 gGnskt~mI~~isP~~~~~~ETl~TL~fA~rak~I~n~~~~n~~~~~~~~~~~~~~e~~~~~~L 362 (365)
T 2y65_A 299 GGNARTTIVICCSPASFNESETKSTLDFGRRAKTVKNVVCVNEELTAEEWKRRYEKEKEKNARL 362 (365)
T ss_dssp TSSSEEEEEEEECCBGGGHHHHHHHHHHHHHHTTCEEECCCEEECCSHHHHHC-----------
T ss_pred CCCccEEEEEEecCccCCHHHHHHHHHHHHHHhcccCcceeCCCCCHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999998765 4666688877776643
No 4
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=100.00 E-value=1.6e-87 Score=692.17 Aligned_cols=345 Identities=52% Similarity=0.805 Sum_probs=265.8
Q ss_pred CCcEEEEEcCCCCccccccCCceEEEEcCC--eEEEECCCCCCC---------CCCCCceeecceeecCCCCCCCCCCCH
Q psy7270 2 SSVKVAVRVRPFNNREISRDCKSIIEMTGN--TTVIINPKLPPE---------SKDTHKNFNFDYSYYSHDPSASNFATQ 70 (459)
Q Consensus 2 ~~vkV~vRvRP~~~~E~~~~~~~~v~~~~~--~~~~~~~~~~~~---------~~~~~~~f~FD~vf~~~d~~~~~~~sQ 70 (459)
++|||+|||||+++.|...+..+++.+++. .+.+..+..... .....+.|.||+|||+++...+++++|
T Consensus 38 ~~vrV~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~F~FD~vF~~~~~~~~~~asQ 117 (443)
T 2owm_A 38 ANVRVVVRVRAFLPRELERNAECIVEMDPATERTSLLVPQETDFADARGARSRRVLEEKSFTFDKSFWSHNTEDEHYATQ 117 (443)
T ss_dssp EECEEEEEEECCCHHHHHTTCCCCEEECSSSCEEEECCCC---------------CCCEEEECSEEEEESCTTSTTCCCH
T ss_pred CCeEEEEEeCCCChHHhhcCCceEEEEcCCCccEEEecCCCcccccccccccccccCCceEecCeEeCCCCcCCccCCCH
Confidence 589999999999999998888888888753 344444321110 012357999999999988777788999
Q ss_pred HHHHHHHHHHHHHHhhcCCceEEEeecCCCCCcceeeccCCCCCCCCChHHHHHHHHHHHHhhccC----C---------
Q psy7270 71 AMVYSDIGEEMLEHAFEGYNVCIFAYGQTGAGKSYTMMGRQEVEGEEGIIPMICQDLFKRIKDTTN----D--------- 137 (459)
Q Consensus 71 ~~vy~~~~~plv~~~l~G~n~ti~aYGqTgSGKT~Tm~G~~~~~~~~Giipr~~~~lF~~i~~~~~----~--------- 137 (459)
++||+.++.|+|+++|+|||+||||||||||||||||+|+.. ++|||||++++||..|..... .
T Consensus 118 ~~Vy~~~~~plv~~~l~GyN~tIfAYGQTGSGKTyTM~G~~~---~~GIipr~~~~lF~~i~~~~~~~~~~~~~V~vS~l 194 (443)
T 2owm_A 118 EHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTMMGTPD---QPGLIPRTCEDLFQRIASAQDETPNISYNVKVSYF 194 (443)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEEESSTTSSHHHHHTCCTT---SCCHHHHHHHHHHHHHHHTTTTSTTCEEEEEEEEE
T ss_pred HHHHHhhhhhHHHHhhcCCceEEEEeCCCCCCCCEEeecCCC---CCchHHHHHHHHHHHHHhhhcccCCceEEEEEEEE
Confidence 999999999999999999999999999999999999999754 599999999999999976421 1
Q ss_pred -----cceeccc-------CCcceEeeeCCCCceecCCccccccCHHHHHHHHHHHhhccccccccCCCCCCCceEEEEE
Q psy7270 138 -----KLKSRWK-------NSNLRVREHPLLGPYVEDLSKLAVTCYRDIHDLIDEGNKARTVAATNMNETSSRSHAVFTI 205 (459)
Q Consensus 138 -----~~~~~~~-------~~~l~i~e~~~~g~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i 205 (459)
.+.++.. ...+.+++++.+|++|.||+++.|.+++|++.+|..|.++|.+++|.||..|||||+||+|
T Consensus 195 EIYnE~i~DLL~~~~~~~~~~~l~ire~~~~g~~V~gl~e~~V~s~~e~~~ll~~G~~~R~~~~T~~N~~SSRSH~Ifti 274 (443)
T 2owm_A 195 EVYNEHVRDLLAPVVPNKPPYYLKVRESPTEGPYVKDLTEVPVRGLEEIIRWMRIGDGSRTVASTKMNDTSSRSHAVFTI 274 (443)
T ss_dssp EEETTEEEETTSCCCSSCCCCCCEEEEETTTEEEEETCCCEECCSHHHHHHHHHHHHTTSCBCSSSSSCBCTTEEEEEEE
T ss_pred EEECCEeeEccCccccCCcccccceeECCCCCEeccCCEEEEcCCHHHHHHHHHHHHhhCCcccCcCCCccCCCeEEEEE
Confidence 1112221 2358999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeeecCCCCccceeEeceeeeccCCCccccCCCCcccchhhhhhhhHhHHHHHHHHHHHHhhhhhhh----------
Q psy7270 206 FFTQQAVDDMTDLTTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEISAVQH---------- 275 (459)
Q Consensus 206 ~v~~~~~~~~~~~~~~~~s~L~~VDLAGsEr~~~~~~~g~r~~E~~~IN~SL~~L~~vI~aL~~~~~~~~---------- 275 (459)
+|.+...+...+......|+|+|||||||||..++++.|.|++|+.+||+||++||+||.+|++......
T Consensus 275 ~v~~~~~~~~~~~~~~~~skL~lVDLAGSER~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~~~~~~~~~~~~~~~g~ 354 (443)
T 2owm_A 275 MLKQIHHDLETDDTTERSSRIRLVDLAGSERAKSTEATGQRLREGSNINKSLTTLGRVIAALADPKSSASRPSSPVKSGR 354 (443)
T ss_dssp EEEEEC-------CCEEEEEEEEEECCCCCC--------------CCSSHHHHHHHHHHHHHCC----------------
T ss_pred EEEEeecccCCCCcceEEEEEEEEECCCCccccccCCccccccchhhhcHHHHHHHHHHHHHhccccccccccccccccc
Confidence 9998654332333445679999999999999999999999999999999999999999999987532100
Q ss_pred hhhhcCCCCCccCCCCcchhhhhhccCCCcceeeeeccCCCCCCHHHHHHHHHHHHHhhcccccceecc-cchHHHH
Q psy7270 276 VAKKKKKADFIPYRDSVLTWLLRENLGGNSKTAMIAAISPADINYDETLSTLRYADRAKQIVCKAIVNE-DANAKLI 351 (459)
Q Consensus 276 ~~~~~~~~~~ipyRdSkLT~lL~dsLgGns~t~~I~~isp~~~~~~eTlsTL~fa~rak~I~n~~~~n~-~~~~~~i 351 (459)
.....++..||||||||||+||||+|||||+|+|||||||+ +++||++||+||+|||+|+|+|++|+ ++..+..
T Consensus 355 ~~~~~~~~~hVPYRdSkLTrLLqdsLgGnskT~mIa~iSP~--~~~ETlsTLrfA~rak~I~n~~~vN~~d~~~~~~ 429 (443)
T 2owm_A 355 GRTPGPANSVVPYRDSVLTWLLKDSLGGNSKTAMIACISPT--DYDETLSTLRYADQAKRIRTRAVVNQVDGVSAAE 429 (443)
T ss_dssp ---------CCCGGGSHHHHHSTTTTTSSCEEEEEEEECSS--CHHHHHHHHHHHHHHTTCEECCCCCCC-------
T ss_pred ccccccCCCcccCcccHhHHHHHHhhCCCCcEEEEEEeccc--cHHHHHHHHHHHHHHhhccccceecccCCccHHH
Confidence 00012245699999999999999999999999999999997 59999999999999999999999998 6554443
No 5
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=100.00 E-value=7.4e-88 Score=675.79 Aligned_cols=324 Identities=45% Similarity=0.668 Sum_probs=254.5
Q ss_pred CCcEEEEEcCCCCccccccCCceEEEEcC--CeEEEECCCCCC---CCCCCCceeecceeecCCCCCCCCCCCHHHHHHH
Q psy7270 2 SSVKVAVRVRPFNNREISRDCKSIIEMTG--NTTVIINPKLPP---ESKDTHKNFNFDYSYYSHDPSASNFATQAMVYSD 76 (459)
Q Consensus 2 ~~vkV~vRvRP~~~~E~~~~~~~~v~~~~--~~~~~~~~~~~~---~~~~~~~~f~FD~vf~~~d~~~~~~~sQ~~vy~~ 76 (459)
++|||+|||||++..|...++..++.+.+ ..+.+.+|.... ......+.|.||+||++. ++|++||+.
T Consensus 4 ~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~v~~~~~~~~~~~~~~~~~~f~FD~Vf~~~-------~~Q~~Vy~~ 76 (350)
T 2vvg_A 4 DNIKVIVRCRPLNARETRENALNIIRMDEASAQVIVDPPEQEKSATQAKKVPRTFTFDAVYDQT-------SCNYGIFQA 76 (350)
T ss_dssp CBCEEEEEECCCCHHHHHTTCCBCEEEEGGGTEEEECC--------------EEEECSEEECTT-------CCHHHHHHH
T ss_pred CCeEEEEEeCCCChhhhccCCceEEEEcCCCCEEEEeeccccccccccCCCceEeeCCEEECCC-------cchhHHHHH
Confidence 68999999999999999888888887754 344443332111 112346899999999765 899999999
Q ss_pred HHHHHHHHhhcCCceEEEeecCCCCCcceeeccCCCCCCCCChHHHHHHHHHHHHhhccCC---------------ccee
Q psy7270 77 IGEEMLEHAFEGYNVCIFAYGQTGAGKSYTMMGRQEVEGEEGIIPMICQDLFKRIKDTTND---------------KLKS 141 (459)
Q Consensus 77 ~~~plv~~~l~G~n~ti~aYGqTgSGKT~Tm~G~~~~~~~~Giipr~~~~lF~~i~~~~~~---------------~~~~ 141 (459)
++.|+|+++++|||+||||||||||||||||+|+.. ++|||||++++||+.+...... .+.+
T Consensus 77 ~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~---~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~D 153 (350)
T 2vvg_A 77 SFKPLIDAVLEGFNSTIFAYGQTGAGKTWTMGGNKE---EPGAIPNSFKHLFDAINSSSSNQNFLVIGSYLELYNEEIRD 153 (350)
T ss_dssp TTHHHHHHHHTTCCEEEEEECSTTSSHHHHHTBCSS---SBCHHHHHHHHHHHHHHTCCTTEEEEEEEEEEEEETTEEEE
T ss_pred HHHHHHHHHhCCCceeEEeecCCCCCCCEEeecCCc---cCchHHHHHHHHHHHHHhhccCCcEEEEEEEEEEeCCEEEE
Confidence 999999999999999999999999999999999864 5999999999999999743221 1111
Q ss_pred c-ccCCcceEeeeCCCCceecCCccccccCHHHHHHHHHHHhhccccccccCCCCCCCceEEEEEEEEEeeecCCCCccc
Q psy7270 142 R-WKNSNLRVREHPLLGPYVEDLSKLAVTCYRDIHDLIDEGNKARTVAATNMNETSSRSHAVFTIFFTQQAVDDMTDLTT 220 (459)
Q Consensus 142 ~-~~~~~l~i~e~~~~g~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~~~~ 220 (459)
+ .....+.+++++.+|++|.||+++.|.+++|++.+|..|.++|++++|.+|..|||||+||+|+|.+..... +...
T Consensus 154 LL~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~--~~~~ 231 (350)
T 2vvg_A 154 LIKNNTKLPLKEDKTRGIYVDGLSMHRVTTAAELSALMDKGFANRHVAATQMNDTSSRSHSIFMVRIECSEVIE--NKEV 231 (350)
T ss_dssp TTTTEEEECEEEETTTEEEETTCCCEEESSHHHHHHHHHHHHHHC----------CTTCEEEEEEEEEEEEC------CE
T ss_pred cccCCcCceeeEcCCCCEEecCCEEEEcCCHHHHHHHHHHHHhccccccccCCCCCCcceEEEEEEEEEeeccC--CCcc
Confidence 1 234568899999999999999999999999999999999999999999999999999999999999875432 2233
Q ss_pred eeEeceeeeccCCCccccCCCCcccchhhhhhhhHhHHHHHHHHHHHHhhhhhhhhhhhcCCCCCccCCCCcchhhhhhc
Q psy7270 221 EKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEISAVQHVAKKKKKADFIPYRDSVLTWLLREN 300 (459)
Q Consensus 221 ~~~s~L~~VDLAGsEr~~~~~~~g~r~~E~~~IN~SL~~L~~vI~aL~~~~~~~~~~~~~~~~~~ipyRdSkLT~lL~ds 300 (459)
...|+|+|||||||||..++++.|.+++|+.+||+||++||+||.+|++ +..||||||||||+||||+
T Consensus 232 ~~~skl~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~------------~~~hvPyRdSkLT~lLqds 299 (350)
T 2vvg_A 232 IRVGKLNLVDLAGSERQSKTGATGETLVEGAKINLSLSALGLVISKLVE------------GATHIPYRDSKLTRLLQDS 299 (350)
T ss_dssp EEEEEEEEEECCCCCC---------------CTTHHHHHHHHHHHHHHH------------TCSSCCGGGCHHHHHTTTT
T ss_pred EEEEEEEEEeCCCCCccccccccHHHHHHHHHHhHHHHHHHHHHHHHHc------------CCCCCCccccHHHHHHHHh
Confidence 5679999999999999999999999999999999999999999999987 4579999999999999999
Q ss_pred cCCCcceeeeeccCCCCCCHHHHHHHHHHHHHhhcccccceecccchHH
Q psy7270 301 LGGNSKTAMIAAISPADINYDETLSTLRYADRAKQIVCKAIVNEDANAK 349 (459)
Q Consensus 301 LgGns~t~~I~~isp~~~~~~eTlsTL~fa~rak~I~n~~~~n~~~~~~ 349 (459)
|||||+|+||+||||+..+++||++||+||+|||+|+|+|++|+++.++
T Consensus 300 LgGnskt~mI~~isP~~~~~~ETl~TL~fA~rak~i~n~~~~n~~~~~~ 348 (350)
T 2vvg_A 300 LGGNSKTLMCANISPASTNYDETMSTLRYADRAKQIKNKPRINEDPKDA 348 (350)
T ss_dssp TTSSSEEEEEEEECCBGGGHHHHHHHHHHHHHHTTCBCCCCCCBSCTTC
T ss_pred cCCCccEEEEEEeCCccccHHHHHHHHHHHHHHhhccccceecCCchhc
Confidence 9999999999999999999999999999999999999999999998754
No 6
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=100.00 E-value=3.7e-87 Score=674.51 Aligned_cols=329 Identities=36% Similarity=0.582 Sum_probs=281.5
Q ss_pred CCcEEEEEcCCCCccccccCCceEEEEcCCeEEEECCCCCCCCCCCCceeecceeecCCCCCCCCCCCHHHHHHHHHHHH
Q psy7270 2 SSVKVAVRVRPFNNREISRDCKSIIEMTGNTTVIINPKLPPESKDTHKNFNFDYSYYSHDPSASNFATQAMVYSDIGEEM 81 (459)
Q Consensus 2 ~~vkV~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~f~FD~vf~~~d~~~~~~~sQ~~vy~~~~~pl 81 (459)
++|+|+|||||++..|...+...++...+...+..... ....+.|.||+||++. ++|++||+. +.|+
T Consensus 5 ~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~~v~~~~~-----~~~~~~f~FD~Vf~~~-------~~Q~~Vy~~-~~~l 71 (369)
T 3cob_A 5 GKIRVYCRLRPLCEKEIIAKERNAIRSVDEFTVEHLWK-----DDKAKQHMYDRVFDGN-------ATQDDVFED-TKYL 71 (369)
T ss_dssp CBCEEEEEECCCCHHHHHTTCCBCEEECSSSEEEEECT-----TSCEEEEECSEEECTT-------CCHHHHHHT-TTHH
T ss_pred CCeEEEEECCCCChhhccCCCcEEEEcCCcEEEEecCC-----CCCceEEecCEEECCC-------CCcceehhh-hhhh
Confidence 68999999999999998766554444444433332111 1234899999999765 899999999 6899
Q ss_pred HHHhhcCCceEEEeecCCCCCcceeeccCCCCCCCCChHHHHHHHHHHHHhhccCC---------------cceecc---
Q psy7270 82 LEHAFEGYNVCIFAYGQTGAGKSYTMMGRQEVEGEEGIIPMICQDLFKRIKDTTND---------------KLKSRW--- 143 (459)
Q Consensus 82 v~~~l~G~n~ti~aYGqTgSGKT~Tm~G~~~~~~~~Giipr~~~~lF~~i~~~~~~---------------~~~~~~--- 143 (459)
|+++++|||+||||||||||||||||+|++. ++|||||++++||+.+...... .+.++.
T Consensus 72 v~~~l~G~n~tifAYGqTGSGKTyTM~G~~~---~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~ 148 (369)
T 3cob_A 72 VQSAVDGYNVCIFAYGQTGSGKTFTIYGADS---NPGLTPRAMSELFRIMKKDSNKFSFSLKAYMVELYQDTLVDLLLPK 148 (369)
T ss_dssp HHHHHTTCEEEEEEEECTTSSHHHHHTBCSS---SBCHHHHHHHHHHHHHHHTTTTEEEEEEEEEEEECSSCEEESSCCS
T ss_pred hHhhhcCCceEEEEECCCCCCCeEeecCCCC---CCchhHHHHHHHHHHHHhhccCceeEEEEEEEEEeCceeeecCCCc
Confidence 9999999999999999999999999999864 5999999999999999765432 112222
Q ss_pred --cCCcceEeeeCCCCceecCCccccccCHHHHHHHHHHHhhccccccccCCCCCCCceEEEEEEEEEeeecCCCCccce
Q psy7270 144 --KNSNLRVREHPLLGPYVEDLSKLAVTCYRDIHDLIDEGNKARTVAATNMNETSSRSHAVFTIFFTQQAVDDMTDLTTE 221 (459)
Q Consensus 144 --~~~~l~i~e~~~~g~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~~~~~ 221 (459)
....+.+++++.++++|.|++++.|.+++|++.+|..|.++|++++|.+|..|||||+||+|+|.+..... ...
T Consensus 149 ~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~----~~~ 224 (369)
T 3cob_A 149 QAKRLKLDIKKDSKGMVSVENVTVVSISTYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIESTNLQT----QAI 224 (369)
T ss_dssp SSCCCCCEEEECTTSCEEEETCCCEEECSHHHHHHHHHHHHHHTCCCSCCTTCHHHHSEEEEEEEEEEEETTT----CCE
T ss_pred ccCCcceEEEECCCCCEEccCCEEEEeCCHHHHHHHHHHHhhcceeecccCCCCCCcceEEEEEEEEEecCCC----CcE
Confidence 13578999999999999999999999999999999999999999999999999999999999999875432 345
Q ss_pred eEeceeeeccCCCccccCCCCcccchhhhhhhhHhHHHHHHHHHHHHhhhhhhhhhhhcCCCCCccCCCCcchhhhhhcc
Q psy7270 222 KVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEISAVQHVAKKKKKADFIPYRDSVLTWLLRENL 301 (459)
Q Consensus 222 ~~s~L~~VDLAGsEr~~~~~~~g~r~~E~~~IN~SL~~L~~vI~aL~~~~~~~~~~~~~~~~~~ipyRdSkLT~lL~dsL 301 (459)
..|+|+|||||||||..++++.|.+++|+.+||+||++||+||.+|++ +..||||||||||+||+|+|
T Consensus 225 ~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~------------~~~hvPyRdSkLT~lLqdsL 292 (369)
T 3cob_A 225 ARGKLSFVDLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVISALSS------------GNQHIPYRNHKLTMLMSDSL 292 (369)
T ss_dssp EEEEEEEEECCCSSCCCCCSSCSHHHHHHHHHTHHHHHHHHHHHHHHT------------TCSCCCGGGCHHHHHTTTTT
T ss_pred EEEEEEEEeCCCCCcccccCccchhhHHHHHHHHHHHHHHHHHHHHhc------------CCCcCCCcCCHHHHHHHHhc
Confidence 679999999999999999999999999999999999999999999986 46799999999999999999
Q ss_pred CCCcceeeeeccCCCCCCHHHHHHHHHHHHHhhcccccceecccchHHHHHHHHHHHHHHHHH
Q psy7270 302 GGNSKTAMIAAISPADINYDETLSTLRYADRAKQIVCKAIVNEDANAKLIRELKEEIQRLRDL 364 (459)
Q Consensus 302 gGns~t~~I~~isp~~~~~~eTlsTL~fa~rak~I~n~~~~n~~~~~~~i~~l~~ei~~L~~~ 364 (459)
||||+|+|||||||+..+++||++||+||+|||+|+|+|.+|.++ ..|.+|++++..|+++
T Consensus 293 gGnskt~mIa~isP~~~~~~ETl~TLrfA~rak~i~~~~~~n~~~--~ei~~L~~~l~~~~~~ 353 (369)
T 3cob_A 293 GGNAKTLMFVNISPAESNLDETHNSLTYASRVRSIVNDPSKNVSS--KEVARLKKLVSYWKEQ 353 (369)
T ss_dssp TSSSEEEEEEEECCBGGGHHHHHHHHHHHHHHHTCBCCCCCCEEC--HHHHHHHHHTTCC---
T ss_pred CCCccEEEEEEeCCccccHHHHHHHHHHHHHHhhcccCCcccCCH--HHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999988 3444555555444433
No 7
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=100.00 E-value=1.2e-86 Score=668.75 Aligned_cols=320 Identities=42% Similarity=0.636 Sum_probs=285.9
Q ss_pred CCcEEEEEcCCCCccccccCCceEEEEcCCeEEEECCCCCCCCCCCCceeecceeecCCCCCCCCCCCHHHHHHHHHHHH
Q psy7270 2 SSVKVAVRVRPFNNREISRDCKSIIEMTGNTTVIINPKLPPESKDTHKNFNFDYSYYSHDPSASNFATQAMVYSDIGEEM 81 (459)
Q Consensus 2 ~~vkV~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~f~FD~vf~~~d~~~~~~~sQ~~vy~~~~~pl 81 (459)
++|+|+|||||++..|...+..+++.+.++..+.+... ...+.|.||+||++. ++|++||+.++.|+
T Consensus 6 ~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~------~~~~~f~FD~Vf~~~-------~~Q~~Vy~~~~~pl 72 (355)
T 1goj_A 6 NSIKVVARFRPQNRVEIESGGQPIVTFQGPDTCTVDSK------EAQGSFTFDRVFDMS-------CKQSDIFDFSIKPT 72 (355)
T ss_dssp CBCEEEEEECCCCHHHHTTTCCBCEEECSTTEEEECST------TCCEEEECSEEECTT-------CCHHHHHHHHTHHH
T ss_pred CCeEEEEECCCCChHHhhcCCceEEEEcCCCeEEEccC------CCccEEeeCeEECCC-------CccHHHHHHHHHHH
Confidence 58999999999999999888888888887766665432 235789999999765 89999999999999
Q ss_pred HHHhhcCCceEEEeecCCCCCcceeeccCCC-CCCCCChHHHHHHHHHHHHhhccCC---------------cceec--c
Q psy7270 82 LEHAFEGYNVCIFAYGQTGAGKSYTMMGRQE-VEGEEGIIPMICQDLFKRIKDTTND---------------KLKSR--W 143 (459)
Q Consensus 82 v~~~l~G~n~ti~aYGqTgSGKT~Tm~G~~~-~~~~~Giipr~~~~lF~~i~~~~~~---------------~~~~~--~ 143 (459)
|+++++|||+||||||||||||||||+|+.. .+..+|||||++++||..+...... .+.++ .
T Consensus 73 v~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~ 152 (355)
T 1goj_A 73 VDDILNGYNGTVFAYGQTGAGKSYTMMGTSIDDPDGRGVIPRIVEQIFTSILSSAANIEYTVRVSYMEIYMERIRDLLAP 152 (355)
T ss_dssp HHHHTTTCCEEEEEECSTTSSHHHHHTBSCTTSTTTBCHHHHHHHHHHHHHHTSCTTEEEEEEEEEEEEETTEEEETTST
T ss_pred HHHHhCCCcceEEEECCCCCCcceEeecCCCCCcccCCchHHHHHHHHHHHHhcccCceEEEEEEEEEEECCEEEEcccC
Confidence 9999999999999999999999999999743 3457899999999999999764322 11222 2
Q ss_pred cCCcceEeeeCCCCceecCCccccccCHHHHHHHHHHHhhccccccccCCCCCCCceEEEEEEEEEeeecCCCCccceeE
Q psy7270 144 KNSNLRVREHPLLGPYVEDLSKLAVTCYRDIHDLIDEGNKARTVAATNMNETSSRSHAVFTIFFTQQAVDDMTDLTTEKV 223 (459)
Q Consensus 144 ~~~~l~i~e~~~~g~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~~~~~~~ 223 (459)
....+.+++++.+|++|.||+++.|.+++|++.+|..|.++|++++|.+|..|||||+||+|+|.+..... .....
T Consensus 153 ~~~~l~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~----~~~~~ 228 (355)
T 1goj_A 153 QNDNLPVHEEKNRGVYVKGLLEIYVSSVQEVYEVMRRGGNARAVAATNMNQESSRSHSIFVITITQKNVET----GSAKS 228 (355)
T ss_dssp TCCSCCEEEETTTEEEETTCCCEECCSHHHHHHHHHHHHHHHHHHHHHTTCCGGGCEEEEEEEEEEEETTT----TEEEE
T ss_pred ccCCceeEEcCCCCEeecCCEEEeCCCHHHHHHHHHHHHhhcCcccccCCCCCCCceEEEEEEEEEeccCC----Cceee
Confidence 34578999999999999999999999999999999999999999999999999999999999999875432 34567
Q ss_pred eceeeeccCCCccccCCCCcccchhhhhhhhHhHHHHHHHHHHHHhhhhhhhhhhhcCCCCCccCCCCcchhhhhhccCC
Q psy7270 224 SKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEISAVQHVAKKKKKADFIPYRDSVLTWLLRENLGG 303 (459)
Q Consensus 224 s~L~~VDLAGsEr~~~~~~~g~r~~E~~~IN~SL~~L~~vI~aL~~~~~~~~~~~~~~~~~~ipyRdSkLT~lL~dsLgG 303 (459)
|+|+|||||||||..++++.|.+++|+.+||+||++||+||.+|++. +..||||||||||+||||+|||
T Consensus 229 skL~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~-----------~~~hvPyRdSkLT~lLqdsLgG 297 (355)
T 1goj_A 229 GQLFLVDLAGSEKVGKTGASGQTLEEAKKINKSLSALGMVINALTDG-----------KSSHVPYRDSKLTRILQESLGG 297 (355)
T ss_dssp EEEEEEECCCCSCCTTSSSCCCCTTTTGGGTSHHHHHHHHHHHHHHC-----------SCSCCCGGGCHHHHHTGGGTTS
T ss_pred eEEEEEECCCCCcccccccchhhHHHHHhhhhHHHHHHHHHHHHhcC-----------CCCCCCCccCHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999863 4679999999999999999999
Q ss_pred CcceeeeeccCCCCCCHHHHHHHHHHHHHhhcccccceecccchHH
Q psy7270 304 NSKTAMIAAISPADINYDETLSTLRYADRAKQIVCKAIVNEDANAK 349 (459)
Q Consensus 304 ns~t~~I~~isp~~~~~~eTlsTL~fa~rak~I~n~~~~n~~~~~~ 349 (459)
||+|+||+||||+..+++||++||+||+|||+|+|+|++|+++...
T Consensus 298 ns~t~mI~~isP~~~~~~ETl~TL~fA~rak~I~n~~~vn~~~~~~ 343 (355)
T 1goj_A 298 NSRTTLIINCSPSSYNDAETLSTLRFGMRAKSIKNKAKVNAELSPA 343 (355)
T ss_dssp SCEEEEEEEECCBGGGHHHHHHHHHHHHHHHTCBCCCCCCSSSSCS
T ss_pred CCcEEEEEEECcccccHHHHHHHHHHHHHHhhccCCceeCCCCCHH
Confidence 9999999999999999999999999999999999999999987643
No 8
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=100.00 E-value=1.6e-86 Score=668.32 Aligned_cols=325 Identities=58% Similarity=0.905 Sum_probs=255.8
Q ss_pred CCcEEEEEcCCCCccccccCCceEEEEcCCeEEEECCCCC---CCCCCCCceeecceeecCCCCC-CCCCCCHHHHHHHH
Q psy7270 2 SSVKVAVRVRPFNNREISRDCKSIIEMTGNTTVIINPKLP---PESKDTHKNFNFDYSYYSHDPS-ASNFATQAMVYSDI 77 (459)
Q Consensus 2 ~~vkV~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~~~---~~~~~~~~~f~FD~vf~~~d~~-~~~~~sQ~~vy~~~ 77 (459)
++|+|+|||||++.+|...+..+++.++++.+++..+... .......+.|.||+|||++|+. .++.++|++||+.+
T Consensus 1 S~VkV~vRvRPl~~~E~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~k~F~FD~vF~~~d~~~~~~~a~Q~~vy~~~ 80 (354)
T 3gbj_A 1 SKVKVAVRIRPMNRRETDLHTKCVVDVDANKVILNPVNTNLSKGDARGQPKVFAYDHCFWSMDESVKEKYAGQDIVFKCL 80 (354)
T ss_dssp -CEEEEEEECCCCHHHHHHTCCBCEEEETTEEEECCC-----------CCEEEECSEEEECSCTTCTTTBCCHHHHHHHH
T ss_pred CCcEEEEECCCCChhhhccCCceEEEeCCCeEEEeCCccccccccccCCceEEEeeEEeccCccccccccccHHHHHHHh
Confidence 6899999999999999988888999998888766543221 1123456899999999987653 46789999999999
Q ss_pred HHHHHHHhhcCCceEEEeecCCCCCcceeeccCCCCCCCCChHHHHHHHHHHHHhhccCCc----------------cee
Q psy7270 78 GEEMLEHAFEGYNVCIFAYGQTGAGKSYTMMGRQEVEGEEGIIPMICQDLFKRIKDTTNDK----------------LKS 141 (459)
Q Consensus 78 ~~plv~~~l~G~n~ti~aYGqTgSGKT~Tm~G~~~~~~~~Giipr~~~~lF~~i~~~~~~~----------------~~~ 141 (459)
+.|+|+++++|||+||||||||||||||||+|+.. ++|||||++++||..+....... +.+
T Consensus 81 ~~~lv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~---~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~D 157 (354)
T 3gbj_A 81 GENILQNAFDGYNACIFAYGQTGSGKSYTMMGTAD---QPGLIPRLCSGLFERTQKEENEEQSFKVEVSYMEIYNEKVRD 157 (354)
T ss_dssp HHHHHHHHHTTCCEEEEEEECTTSSHHHHHTBCSS---SBCHHHHHHHHHHHHHHHHCBTTEEEEEEEEEEEEETTEEEE
T ss_pred hHHHHHHHhCCceeEEEeeCCCCCCCceEEecCCC---CCchhhHHHHHHHHHHHhhcccccceeeeceeEEEecCeeeE
Confidence 99999999999999999999999999999999764 58999999999999987543322 122
Q ss_pred cc----cCCcceEeeeCCCCceecCCccccccCHHHHHHHHHHHhhccccccccCCCCCCCceEEEEEEEEEeeecCCCC
Q psy7270 142 RW----KNSNLRVREHPLLGPYVEDLSKLAVTCYRDIHDLIDEGNKARTVAATNMNETSSRSHAVFTIFFTQQAVDDMTD 217 (459)
Q Consensus 142 ~~----~~~~l~i~e~~~~g~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~ 217 (459)
+. ....+.+++++..|++|.||+++.|.+++|++.+|..|.++|.+++|.+|..|||||+||+|+|.+...+...+
T Consensus 158 LL~~~~~~~~l~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~ 237 (354)
T 3gbj_A 158 LLDPKGSRQTLKVREHSVLGPYVDGLSKLAVTSYKDIESLMSEGNKSRTVAATNMNEESSRSHAVFKITLTHTLYDVKSG 237 (354)
T ss_dssp TTC------CBCBC------CCBTTCCCEEECSHHHHHHHHHHHHHCC----------CTTSEEEEEEEEEEEEECTTSC
T ss_pred ccCCCCCCcceEEEEcCCCCEEEEeeEEEecCCHHHHHHHHHHHHhcCCeeecCCCCCCCcccEEEEEEEEEEecccCCC
Confidence 22 23578999999999999999999999999999999999999999999999999999999999999875554444
Q ss_pred ccceeEeceeeeccCCCccccCCCCcccchhhhhhhhHhHHHHHHHHHHHHhhhhhhhhhhhcCCCCCccCCCCcchhhh
Q psy7270 218 LTTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEISAVQHVAKKKKKADFIPYRDSVLTWLL 297 (459)
Q Consensus 218 ~~~~~~s~L~~VDLAGsEr~~~~~~~g~r~~E~~~IN~SL~~L~~vI~aL~~~~~~~~~~~~~~~~~~ipyRdSkLT~lL 297 (459)
......|+|+|||||||||..++++.|.|++|+.+||+||++||+||.+|++... .+++..||||||||||+||
T Consensus 238 ~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~------~~~~~~hvPyRdSkLT~lL 311 (354)
T 3gbj_A 238 TSGEKVGKLSLVDLAGSERATKTGAAGDRLKEGSNINKSLTTLGLVISALADQSA------GKNKNKFVPYRDSVLTWLL 311 (354)
T ss_dssp EEEEEEEEEEEEECCCCCCCCCCC------CHHHHHHHHHHHHHHHHHHHHHC------------CCCCCGGGSHHHHHT
T ss_pred CCCeeEEEEEEEECCCCCchhhcCCccccchhHHHhhHHHHHHHHHHHHHHhhhc------ccCCCCcccccccHHHHHH
Confidence 4456779999999999999999999999999999999999999999999997422 1235689999999999999
Q ss_pred hhccCCCcceeeeeccCCCCCCHHHHHHHHHHHHHhhc
Q psy7270 298 RENLGGNSKTAMIAAISPADINYDETLSTLRYADRAKQ 335 (459)
Q Consensus 298 ~dsLgGns~t~~I~~isp~~~~~~eTlsTL~fa~rak~ 335 (459)
||+|||||+|+|||||||+..+++||++||+||.||+.
T Consensus 312 qdsLgGnskt~mIa~vsP~~~~~~ETlsTLr~a~~~~~ 349 (354)
T 3gbj_A 312 KDSLGGNSKTAMVATVSPAADNYDETLSTLRYADRAKH 349 (354)
T ss_dssp HHHHSTTCEEEEEEEECCBGGGHHHHHHHHHHHHHHC-
T ss_pred HHHhCCCCeEEEEEEeCCCcchHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999985
No 9
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=100.00 E-value=3.1e-87 Score=677.07 Aligned_cols=326 Identities=34% Similarity=0.501 Sum_probs=229.0
Q ss_pred CCcEEEEEcCCCCccccccCCceEEEEcC-CeEEEECCCCCCCCCCCCceeecceeecCCCCCCCCCCCHHHHHHHHHHH
Q psy7270 2 SSVKVAVRVRPFNNREISRDCKSIIEMTG-NTTVIINPKLPPESKDTHKNFNFDYSYYSHDPSASNFATQAMVYSDIGEE 80 (459)
Q Consensus 2 ~~vkV~vRvRP~~~~E~~~~~~~~v~~~~-~~~~~~~~~~~~~~~~~~~~f~FD~vf~~~d~~~~~~~sQ~~vy~~~~~p 80 (459)
++|+|+|||||++..|...+...|+...+ ..+.+.++.. ....+.|.||+||++. ++|++||+.++.|
T Consensus 21 ~~irV~vRvRP~~~~E~~~~~~~~v~~~~~~~~~i~~~~~----~~~~~~f~FD~Vf~~~-------~tQ~~Vy~~~~~p 89 (388)
T 3bfn_A 21 ARVRVAVRLRPFVDGTAGASDPPCVRGMDSCSLEIANWRN----HQETLKYQFDAFYGER-------STQQDIYAGSVQP 89 (388)
T ss_dssp CCCEEEEEECCCC---------------------------------CEEEEECSEEECTT-------CCHHHHHHHHTGG
T ss_pred CCEEEEEECCCCChhhhccCCCceEEecCCCeEEEecCCC----CCCeeEEEcceEecCC-------CCHhHHHHHHHHH
Confidence 68999999999999998766555555433 3333333221 1235789999999765 8999999999999
Q ss_pred HHHHhhcCCceEEEeecCCCCCcceeeccCCCCCCCCChHHHHHHHHHHHHhhccCC------------------cceec
Q psy7270 81 MLEHAFEGYNVCIFAYGQTGAGKSYTMMGRQEVEGEEGIIPMICQDLFKRIKDTTND------------------KLKSR 142 (459)
Q Consensus 81 lv~~~l~G~n~ti~aYGqTgSGKT~Tm~G~~~~~~~~Giipr~~~~lF~~i~~~~~~------------------~~~~~ 142 (459)
+|+++++|||+||||||||||||||||+|+.. ++|||||++++||+.+.+.... .+.++
T Consensus 90 lv~~~l~G~N~tifAYGqTGSGKTyTM~G~~~---~~Giipra~~~lF~~i~~~~~~~~~~~~~V~vS~lEIYnE~i~DL 166 (388)
T 3bfn_A 90 ILRHLLEGQNASVLAYGPTGAGKTHTMLGSPE---QPGVIPRALMDLLQLTREEGAEGRPWALSVTMSYLEIYQEKVLDL 166 (388)
T ss_dssp GHHHHTTTCCEEEEEESCTTSSHHHHHTBCSS---SBCHHHHHHHHHHHHHHHHTSTTCSEEEEEEEEEEEEETTEEEES
T ss_pred HHHHhhcCceeeEeeecCCCCCCCeEeecCcc---ccchhHHHHHHHHHHHHHhhccCCCceEEEEEEEEEEECCeeeeh
Confidence 99999999999999999999999999999754 5999999999999999753211 11111
Q ss_pred --ccCCcceEeeeCCCCceecCCccccccCHHHHHHHHHHHhhccccccccCCCCCCCceEEEEEEEEEeeecCCCCccc
Q psy7270 143 --WKNSNLRVREHPLLGPYVEDLSKLAVTCYRDIHDLIDEGNKARTVAATNMNETSSRSHAVFTIFFTQQAVDDMTDLTT 220 (459)
Q Consensus 143 --~~~~~l~i~e~~~~g~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~~~~ 220 (459)
.....+.+++++.++++|.||+++.|.+++|++.+|..|.++|.+++|.||..|||||+||+|+|.+..... ...
T Consensus 167 L~~~~~~l~ired~~~~v~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~---~~~ 243 (388)
T 3bfn_A 167 LDPASGDLVIREDCRGNILIPGLSQKPISSFADFERHFLPASRNRTVGATRLNQRSSRSHAVLLVKVDQRERLA---PFR 243 (388)
T ss_dssp SSCSSCBCCCEECTTSCEECTTCCCEECCSHHHHHHHHHHHTC-----------CGGGSEEEEEEEEEEEESST---TCC
T ss_pred hccCCCCceEEEcCCCCEEeccceEEEeCCHHHHHHHHHHHhhccccccccCCCCCCCCeEEEEEEEEEeccCC---CCc
Confidence 234578999999999999999999999999999999999999999999999999999999999999865332 123
Q ss_pred eeEeceeeeccCCCccccCCCCcccchhhhhhhhHhHHHHHHHHHHHHhhhhhhhhhhhcCCCCCccCCCCcchhhhhhc
Q psy7270 221 EKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEISAVQHVAKKKKKADFIPYRDSVLTWLLREN 300 (459)
Q Consensus 221 ~~~s~L~~VDLAGsEr~~~~~~~g~r~~E~~~IN~SL~~L~~vI~aL~~~~~~~~~~~~~~~~~~ipyRdSkLT~lL~ds 300 (459)
...|+|+|||||||||..++++.|.|++|+.+||+||++||+||.+|++ +..||||||||||+||||+
T Consensus 244 ~~~skL~lVDLAGSEr~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~------------~~~hVPYRdSkLTrlLqds 311 (388)
T 3bfn_A 244 QREGKLYLIDLAGSEDNRRTGNKGLRLKESGAINTSLFVLGKVVDALNQ------------GLPRVPYRDSKLTRLLQDS 311 (388)
T ss_dssp EEEEEEEEEECCCTTC--------------CCCCHHHHHHHHHHHHHHT------------TCSCCCGGGSHHHHHTTTS
T ss_pred eeEEEEEEEECCCCcccccccCccchhHHHhHhhhhHHHHHHHHHHHhc------------CCCCCcCcccHHHHHHHHh
Confidence 4679999999999999999999999999999999999999999999986 4569999999999999999
Q ss_pred cCCCcceeeeeccCCCCCCHHHHHHHHHHHHHhhcccccceecccchHHHHHHHHH
Q psy7270 301 LGGNSKTAMIAAISPADINYDETLSTLRYADRAKQIVCKAIVNEDANAKLIRELKE 356 (459)
Q Consensus 301 LgGns~t~~I~~isp~~~~~~eTlsTL~fa~rak~I~n~~~~n~~~~~~~i~~l~~ 356 (459)
|||||+|+|||||||+..+++||++||+||+|||+|+|+|++|++.+...+..++.
T Consensus 312 LgGnskT~mIa~iSP~~~~~~ETlsTLrfA~rak~I~n~p~~n~~~~~~~l~~~k~ 367 (388)
T 3bfn_A 312 LGGSAHSILIANIAPERRFYLDTVSALNFAARSKEVINRPFTNESLQPHALGPVKL 367 (388)
T ss_dssp SSTTCEEEEEEEECCSGGGHHHHHHHHHHHCSEEEEC-------------------
T ss_pred hCCCccEEEEEEECCccccHHHHHHHHHHHHHHhhCcCcCcccCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988776654443
No 10
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=100.00 E-value=2.5e-86 Score=665.05 Aligned_cols=318 Identities=41% Similarity=0.630 Sum_probs=265.7
Q ss_pred CCCcEEEEEcCCCCccccccCCceEE--EEcCCeEEEECCCCCCCCCCCCceeecceeecCCCCCCCCCCCHHHHHHHHH
Q psy7270 1 MSSVKVAVRVRPFNNREISRDCKSII--EMTGNTTVIINPKLPPESKDTHKNFNFDYSYYSHDPSASNFATQAMVYSDIG 78 (459)
Q Consensus 1 m~~vkV~vRvRP~~~~E~~~~~~~~v--~~~~~~~~~~~~~~~~~~~~~~~~f~FD~vf~~~d~~~~~~~sQ~~vy~~~~ 78 (459)
.++|+|+|||||++..|...+...++ ...++.+... ...+.|.||+||++. ++|++||+.++
T Consensus 3 ~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~i~~~---------~~~~~F~FD~Vf~~~-------~tQ~~Vy~~~~ 66 (349)
T 1t5c_A 3 EGAVAVCVRVRPLNSREESLGETAQVYWKTDNNVIYQV---------DGSKSFNFDRVFHGN-------ETTKNVYEEIA 66 (349)
T ss_dssp CCCEEEEEEECCCSCSSCTTTTCCCCCEEEETTEEEET---------TSSCEEECSCEECTT-------SCHHHHHHHTT
T ss_pred CCCEEEEEECCCCChhhhccCCCcEEEEeCCCCeEEEC---------CCCeEEECCEEECCC-------CCHHHHHHHHH
Confidence 37899999999999999876655433 2333333221 124789999999876 89999999999
Q ss_pred HHHHHHhhcCCceEEEeecCCCCCcceeeccCCCCCCCCChHHHHHHHHHHHHhhccCCc--------------ceecc-
Q psy7270 79 EEMLEHAFEGYNVCIFAYGQTGAGKSYTMMGRQEVEGEEGIIPMICQDLFKRIKDTTNDK--------------LKSRW- 143 (459)
Q Consensus 79 ~plv~~~l~G~n~ti~aYGqTgSGKT~Tm~G~~~~~~~~Giipr~~~~lF~~i~~~~~~~--------------~~~~~- 143 (459)
.|+|+++++|||+||||||||||||||||+|+.. .+|||||++++||+.+....... +.++.
T Consensus 67 ~plv~~~l~G~n~tifAYGqTGSGKTyTM~G~~~---~~Giipr~~~~lF~~i~~~~~~~~~v~vS~~EIYnE~i~DLL~ 143 (349)
T 1t5c_A 67 APIIDSAIQGYNGTIFAYGQTASGKTYTMMGSED---HLGVIPRAIHDIFQKIKKFPDREFLLRVSYMEIYNETITDLLC 143 (349)
T ss_dssp HHHHHHHHTTCCEEEEEEESTTSSHHHHHTBCSS---SBCHHHHHHHHHHHHGGGCTTEEEEEEEEEEEEETTEEEESSS
T ss_pred HHHHHHHHcCCccceeeecCCCCCCCeEEecCCC---CCchHHHHHHHHHHHHHhCcCCcEEEEEEEEEEeCCEEEEccC
Confidence 9999999999999999999999999999999764 59999999999999998654322 22222
Q ss_pred ---cCCcceEeeeCCCCceecCCccccccCHHHHHHHHHHHhhccccccccCCCCCCCceEEEEEEEEEeeecCCCC-cc
Q psy7270 144 ---KNSNLRVREHPLLGPYVEDLSKLAVTCYRDIHDLIDEGNKARTVAATNMNETSSRSHAVFTIFFTQQAVDDMTD-LT 219 (459)
Q Consensus 144 ---~~~~l~i~e~~~~g~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~-~~ 219 (459)
....+.+++++.++++|.||+++.|.+++|++.+|..|.++|.+++|.+|..|||||+||+|.|.+........ ..
T Consensus 144 ~~~~~~~l~i~ed~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~ 223 (349)
T 1t5c_A 144 GTQKMKPLIIREDVNRNVYVADLTEEVVYTSEMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESREKGEPSNCEG 223 (349)
T ss_dssp SSCTTCCEEEEETTTTEEEETTCCCEECSSHHHHHHHHHHHHHTTSSSSSSSSCTTTTCEEEEEEEEEEEECC-------
T ss_pred CCCCCCCceEEECCCCCEEecCCEEEEeCCHHHHHHHHHHhhcccccccccCCCCCCCceEEEEEEEEEeccCCCcCcCc
Confidence 23578999999999999999999999999999999999999999999999999999999999999876443211 12
Q ss_pred ceeEeceeeeccCCCccccCCCCcccchhhhhhhhHhHHHHHHHHHHHHhhhhhhhhhhhcCCCCCccCCCCcchhhhhh
Q psy7270 220 TEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEISAVQHVAKKKKKADFIPYRDSVLTWLLRE 299 (459)
Q Consensus 220 ~~~~s~L~~VDLAGsEr~~~~~~~g~r~~E~~~IN~SL~~L~~vI~aL~~~~~~~~~~~~~~~~~~ipyRdSkLT~lL~d 299 (459)
....|+|+|||||||||..++++.|.|++|+.+||+||++||+||.+|++. .+..||||||||||+||||
T Consensus 224 ~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~----------~~~~hvPyRdSkLT~lLqd 293 (349)
T 1t5c_A 224 SVKVSHLNLVDLAGSERAAQTGAAGVRLKEGCNINRSLFILGQVIKKLSDG----------QVGGFINYRDSKLTRILQN 293 (349)
T ss_dssp CEEEEEEEEEECCCGGGTC-------CCCSSSCCCHHHHHHHHHHHHHHHT----------CCTTSSCGGGSHHHHHTGG
T ss_pred cEEEEEEEEEECCCCccccccCCccccchhhhHHhHHHHHHHHHHHHHhcc----------CCCCCCcccccHHHHHHHH
Confidence 356799999999999999999999999999999999999999999999873 2346999999999999999
Q ss_pred ccCCCcceeeeeccCCCCCCHHHHHHHHHHHHHhhcccccceecccchHH
Q psy7270 300 NLGGNSKTAMIAAISPADINYDETLSTLRYADRAKQIVCKAIVNEDANAK 349 (459)
Q Consensus 300 sLgGns~t~~I~~isp~~~~~~eTlsTL~fa~rak~I~n~~~~n~~~~~~ 349 (459)
+|||||+|+|||||||+ +++||++||+||+|||+|+|+|++|+++...
T Consensus 294 sLgGnskt~mI~~isP~--~~~ETlsTL~fA~rak~I~n~~~vn~~~~~~ 341 (349)
T 1t5c_A 294 SLGGNAKTRIICTITPV--SFDETLTALQFASTAKYMKNTPYVNEVSTDE 341 (349)
T ss_dssp GTTSSSEEEEEEEECTT--CSHHHHHHHHHHHHHTTCCCCCCCCEEC---
T ss_pred hcCCCceEEEEEEeCCC--CHHHHHHHHHHHHHHhhcccCceeccCCCCC
Confidence 99999999999999997 5899999999999999999999999987654
No 11
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=100.00 E-value=5.5e-86 Score=664.64 Aligned_cols=315 Identities=42% Similarity=0.662 Sum_probs=247.1
Q ss_pred CCcEEEEEcCCCCccccccCCceEEEEcCCeEEEECCCCCCCC---------------CCCCceeecceeecCCCCCCCC
Q psy7270 2 SSVKVAVRVRPFNNREISRDCKSIIEMTGNTTVIINPKLPPES---------------KDTHKNFNFDYSYYSHDPSASN 66 (459)
Q Consensus 2 ~~vkV~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~~~~~~---------------~~~~~~f~FD~vf~~~d~~~~~ 66 (459)
++|||+|||||++.+|...++..++.+.++.+++.+|...... ....+.|.||+||++.
T Consensus 10 ~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~FD~vf~~~------ 83 (355)
T 3lre_A 10 HHMKVVVRVRPENTKEKAAGFHKVVHVVDKHILVFDPKQEEVSFFHGKKTTNQNVIKKQNKDLKFVFDAVFDET------ 83 (355)
T ss_dssp --CEEEEEECCCCHHHHHTTCCBSEEECSSSEEEEC------------------------CCEEEECSEEECTT------
T ss_pred CCCEEEEEeCcCChHHHhcCCceEEEecCCceEEecCCCCcceeecccccccccchhccCCCceEEeceEECCC------
Confidence 6899999999999999999999999999888888877532110 1234689999999765
Q ss_pred CCCHHHHHHHHHHHHHHHhhcCCceEEEeecCCCCCcceeeccCCCCCCCCChHHHHHHHHHHHHhhccCCc--------
Q psy7270 67 FATQAMVYSDIGEEMLEHAFEGYNVCIFAYGQTGAGKSYTMMGRQEVEGEEGIIPMICQDLFKRIKDTTNDK-------- 138 (459)
Q Consensus 67 ~~sQ~~vy~~~~~plv~~~l~G~n~ti~aYGqTgSGKT~Tm~G~~~~~~~~Giipr~~~~lF~~i~~~~~~~-------- 138 (459)
++|++||+.++.|+|+++++|||+||||||||||||||||+|+.. ++|||||++++||..+.+.....
T Consensus 84 -~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~---~~Giipr~~~~lf~~i~~~~~~~~~~v~vS~ 159 (355)
T 3lre_A 84 -STQSEVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTMLGSAD---EPGVMYLTMLHLYKCMDEIKEEKICSTAVSY 159 (355)
T ss_dssp -CCHHHHHHTTHHHHHHHHTTTCCEEEEEECCTTSSHHHHHTBCSS---SBCHHHHHHHHHHHHHHHTTTTEEEEEEEEE
T ss_pred -CChHHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCceeeeccCCC---CCCeeehhhhHHHHhhhhhccCceEEEEEEE
Confidence 899999999999999999999999999999999999999999765 58999999999999998654321
Q ss_pred -------ceec-ccCCcceEeeeCCCCceecCCccccccCHHHHHHHHHHHhhccccccccCCCCCCCceEEEEEEEEEe
Q psy7270 139 -------LKSR-WKNSNLRVREHPLLGPYVEDLSKLAVTCYRDIHDLIDEGNKARTVAATNMNETSSRSHAVFTIFFTQQ 210 (459)
Q Consensus 139 -------~~~~-~~~~~l~i~e~~~~g~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~ 210 (459)
+.++ .....+.+++++..|++|.||+++.|.+++|++.+|..|.++|.+++|.+|..|||||+||+|+|.+.
T Consensus 160 ~EIYnE~i~DLL~~~~~l~ire~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~ 239 (355)
T 3lre_A 160 LEVYNEQIRDLLVNSGPLAVREDTQKGVVVHGLTLHQPKSSEEILHLLDNGNKNRTQHPTDMNATSSRSHAVFQIYLRQQ 239 (355)
T ss_dssp EEEETTEEEESSSCCCCBEEEECTTSCEEEETCCCBCCCSHHHHHHHHHHHHHTSCBC-----CBCTTCEEEEEEEEEEE
T ss_pred EEEECCEEEECcCCCCCceeEEcCCCCEEeeeeeEEecCCHHHHHHHHHHHHhcCCcccccCcCCCCCCcEEEEEEEEEe
Confidence 1111 34567999999999999999999999999999999999999999999999999999999999999987
Q ss_pred eecCCCCccceeEeceeeeccCCCccccCCCCcccchhhhhhhhHhHHHHHHHHHHHHhhhhhhhhhhhcCCCCCccCCC
Q psy7270 211 AVDDMTDLTTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEISAVQHVAKKKKKADFIPYRD 290 (459)
Q Consensus 211 ~~~~~~~~~~~~~s~L~~VDLAGsEr~~~~~~~g~r~~E~~~IN~SL~~L~~vI~aL~~~~~~~~~~~~~~~~~~ipyRd 290 (459)
...... ......|+|+|||||||||..++++.|.|++|+.+||+||++||+||.||++.. ++..||||||
T Consensus 240 ~~~~~~-~~~~~~skl~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~---------~~~~hiPyRd 309 (355)
T 3lre_A 240 DKTASI-NQNVRIAKMSLIDLAGSERASTSGAKGTRFVEGTNINRSLLALGNVINALADSK---------RKNQHIPYRN 309 (355)
T ss_dssp ETTSCT-TCCCCCEEEEEEECCCCCC-----------------CHHHHHHHHHHHHHC-----------------CCGGG
T ss_pred cCCCCC-CCCEEEEEEEEEECCCCCcCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhcc---------CCCCcCCccc
Confidence 543321 223456999999999999999999999999999999999999999999998741 2457999999
Q ss_pred CcchhhhhhccCCCcceeeeeccCCCCCCHHHHHHHHHHHHHhhcc
Q psy7270 291 SVLTWLLRENLGGNSKTAMIAAISPADINYDETLSTLRYADRAKQI 336 (459)
Q Consensus 291 SkLT~lL~dsLgGns~t~~I~~isp~~~~~~eTlsTL~fa~rak~I 336 (459)
||||+||||+|||||+|+|||||||+..+++||++||+||+|||+|
T Consensus 310 SkLT~lL~dsLgGnskt~mIa~isP~~~~~~ETl~TL~fA~rak~I 355 (355)
T 3lre_A 310 SKLTRLLKDSLGGNCQTIMIAAVSPSSVFYDDTYNTLKYANRAKDI 355 (355)
T ss_dssp SHHHHHTTTTSSTTSEEEEEEEECCBGGGHHHHHHHHHHHHHTC--
T ss_pred CHHHHHHHHhcCCCceEEEEEEeCCchhhHHHHHHHHHHHHHhccC
Confidence 9999999999999999999999999999999999999999999987
No 12
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=100.00 E-value=1.2e-86 Score=670.34 Aligned_cols=322 Identities=39% Similarity=0.612 Sum_probs=258.3
Q ss_pred CCcEEEEEcCCCCccccccCCceEEEEcCC--eEEEECCCCCCCCCCCCceeecceeecCCCCCCCCCCCHHHHHHHHHH
Q psy7270 2 SSVKVAVRVRPFNNREISRDCKSIIEMTGN--TTVIINPKLPPESKDTHKNFNFDYSYYSHDPSASNFATQAMVYSDIGE 79 (459)
Q Consensus 2 ~~vkV~vRvRP~~~~E~~~~~~~~v~~~~~--~~~~~~~~~~~~~~~~~~~f~FD~vf~~~d~~~~~~~sQ~~vy~~~~~ 79 (459)
++|+|+|||||++..|...++..++.+.+. .+.+..+.. ......+.|.||+||++. ++|++||+.++.
T Consensus 8 ~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~~~~~~~--~~~~~~~~f~FD~Vf~~~-------~~Q~~Vy~~~~~ 78 (359)
T 1x88_A 8 KNIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGL--ADKSSRKTYTFDMVFGAS-------TKQIDVYRSVVC 78 (359)
T ss_dssp -CCEEEEEECCCCHHHHHTTCCCCEEEETTTTEEEEEEEEE--TTEEEEEEEECSEEECTT-------CCHHHHHHHHHH
T ss_pred CCeEEEEEeCCCChhhhhcCCceEEEEcCCCcEEEEeCCCc--cCCcCceEEeceEEEecc-------CchhHHHHHHHH
Confidence 689999999999999998888888877653 333322111 112235789999999765 899999999999
Q ss_pred HHHHHhhcCCceEEEeecCCCCCcceeeccCCCC--------CCCCChHHHHHHHHHHHHhhcc-------------CCc
Q psy7270 80 EMLEHAFEGYNVCIFAYGQTGAGKSYTMMGRQEV--------EGEEGIIPMICQDLFKRIKDTT-------------NDK 138 (459)
Q Consensus 80 plv~~~l~G~n~ti~aYGqTgSGKT~Tm~G~~~~--------~~~~Giipr~~~~lF~~i~~~~-------------~~~ 138 (459)
|+|+++++|||+||||||||||||||||+|+... ...+|||||++++||+.+.+.. ++.
T Consensus 79 plv~~~l~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~v~vS~~EIYnE~ 158 (359)
T 1x88_A 79 PILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIPRTLHQIFEKLTDNGTEFSVKVSLLEIYNEE 158 (359)
T ss_dssp HHHHHHHTTCEEEEEEEECTTSSHHHHHTBCCCGGGCSCGGGCTTBCHHHHHHHHHHHHTSSSSEEEEEEEEEEEEETTE
T ss_pred HhHHHHhCCCceEEEEeCCCCCCCceEEeccCCccccccccccccCCchHHHHHHHHHHHhccCceEEEEEEEEEEeCce
Confidence 9999999999999999999999999999997642 1247999999999999987532 111
Q ss_pred ceeccc-----CCcceEeeeCC--CCceecCCccccccCHHHHHHHHHHHhhccccccccCCCCCCCceEEEEEEEEEee
Q psy7270 139 LKSRWK-----NSNLRVREHPL--LGPYVEDLSKLAVTCYRDIHDLIDEGNKARTVAATNMNETSSRSHAVFTIFFTQQA 211 (459)
Q Consensus 139 ~~~~~~-----~~~l~i~e~~~--~g~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~ 211 (459)
+.++.. ...+.+++++. +|++|.||+++.|.+++|++.+|..|.++|.+++|.||..|||||+||+|+|.+..
T Consensus 159 i~DLL~~~~~~~~~l~i~~~~~~~~~v~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~i~~~~ 238 (359)
T 1x88_A 159 LFDLLNPSSDVSERLQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKE 238 (359)
T ss_dssp EEETTCTTSCTTCCBEEEEETTEEEEEEEETCCCEEECSGGGHHHHHHHHHHHHHHHHHHSTTHHHHCEEEEEEEEEEEE
T ss_pred eeehhcccccccccceEEeccCCCCCEEEcCCEEEEcCCHHHHHHHHHHHHhhcccccccCCCCCCCccEEEEEEEEEec
Confidence 222221 24689999984 78999999999999999999999999999999999999999999999999998765
Q ss_pred ecCCCCccceeEeceeeeccCCCccccCCCCcccchhhhhhhhHhHHHHHHHHHHHHhhhhhhhhhhhcCCCCCccCCCC
Q psy7270 212 VDDMTDLTTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEISAVQHVAKKKKKADFIPYRDS 291 (459)
Q Consensus 212 ~~~~~~~~~~~~s~L~~VDLAGsEr~~~~~~~g~r~~E~~~IN~SL~~L~~vI~aL~~~~~~~~~~~~~~~~~~ipyRdS 291 (459)
... .+......|+|+|||||||||..++++.|.|++|+.+||+||++||+||.+|++ +..|||||||
T Consensus 239 ~~~-~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~------------~~~hvPyRdS 305 (359)
T 1x88_A 239 TTI-DGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVE------------RTPHVPYRES 305 (359)
T ss_dssp ECT-TSCEEEEEEEEEEEECCCCCC---------------CCCHHHHHHHHHHHHHHT------------TCSCCCGGGS
T ss_pred ccC-CCCceEEEEEEEEEcCCCCCcccccCCcccchHHHhhhhHHHHHHHHHHHHHhc------------CCCCCccccc
Confidence 332 122345679999999999999999999999999999999999999999999986 5689999999
Q ss_pred cchhhhhhccCCCcceeeeeccCCCCCCHHHHHHHHHHHHHhhcccccceeccc
Q psy7270 292 VLTWLLRENLGGNSKTAMIAAISPADINYDETLSTLRYADRAKQIVCKAIVNED 345 (459)
Q Consensus 292 kLT~lL~dsLgGns~t~~I~~isp~~~~~~eTlsTL~fa~rak~I~n~~~~n~~ 345 (459)
|||+||||+|||||+|+|||||||+..+++||++||+||+|||+|+|+|++|++
T Consensus 306 kLT~lLqdsLgGnskt~mIa~vsP~~~~~~ETl~TLrfA~rak~I~n~p~vn~~ 359 (359)
T 1x88_A 306 KLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVNQK 359 (359)
T ss_dssp HHHHHTGGGSSSSSEEEEEEEECCCGGGHHHHHHHHHHHHHHTTCCCCCC----
T ss_pred hHHHHHHHHhCCCCeEEEEEEECCCcccHHHHHHHHHHHHHHhhccCcceeCCC
Confidence 999999999999999999999999999999999999999999999999999963
No 13
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=100.00 E-value=1.1e-85 Score=654.96 Aligned_cols=302 Identities=43% Similarity=0.659 Sum_probs=273.0
Q ss_pred CCcEEEEEcCCCCccccccCCceEEEEcCCeEEEECCCCCCCCCCCCceeecceeecCCCCCCCCCCCHHHHHHHHHHHH
Q psy7270 2 SSVKVAVRVRPFNNREISRDCKSIIEMTGNTTVIINPKLPPESKDTHKNFNFDYSYYSHDPSASNFATQAMVYSDIGEEM 81 (459)
Q Consensus 2 ~~vkV~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~f~FD~vf~~~d~~~~~~~sQ~~vy~~~~~pl 81 (459)
++|+|+|||||+++.|...+...++.+.++..+++. .+.|.||+||++. ++|++||+.++.|+
T Consensus 7 ~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~----------~~~f~FD~Vf~~~-------~sQ~~Vy~~~~~pl 69 (325)
T 1bg2_A 7 CNIKVMCRFRPLNESEVNRGDKYIAKFQGEDTVVIA----------SKPYAFDRVFQSS-------TSQEQVYNDCAKKI 69 (325)
T ss_dssp CEEEEEEEECCCCHHHHHHTCCBCCEEETTTEEEET----------TEEEECSEEECTT-------CCHHHHHHHHTHHH
T ss_pred CCEEEEEEcCCCChhHhccCCeeEEEECCCCeEEEC----------CEEEECCeEeCCC-------CCHHHHHHHHhhhh
Confidence 589999999999999998888888777776666653 3689999999775 89999999999999
Q ss_pred HHHhhcCCceEEEeecCCCCCcceeeccCCCCCCCCChHHHHHHHHHHHHhhccCC---------------cceec--cc
Q psy7270 82 LEHAFEGYNVCIFAYGQTGAGKSYTMMGRQEVEGEEGIIPMICQDLFKRIKDTTND---------------KLKSR--WK 144 (459)
Q Consensus 82 v~~~l~G~n~ti~aYGqTgSGKT~Tm~G~~~~~~~~Giipr~~~~lF~~i~~~~~~---------------~~~~~--~~ 144 (459)
|+++++|||+||||||||||||||||+|+..++..+|||||++++||+.+...... .+.++ ..
T Consensus 70 v~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~v~DLL~~~ 149 (325)
T 1bg2_A 70 VKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPEGMGIIPRIVQDIFNYIYSMDENLEFHIKVSYFEIYLDKIRDLLDVS 149 (325)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHHHTBSTTCTTTBCHHHHHHHHHHHHHHHHCSSEEEEEEEEEEEEETTEEEESSCTT
T ss_pred HHHHhCCCeEEEEEECCCCCCCceEecccCCCcccCccHHHHHHHHHHHHHhccCCceEEEEEEEEEEecCeeeecccCC
Confidence 99999999999999999999999999998777777899999999999999754321 12222 23
Q ss_pred CCcceEeeeCCCCceecCCccccccCHHHHHHHHHHHhhccccccccCCCCCCCceEEEEEEEEEeeecCCCCccceeEe
Q psy7270 145 NSNLRVREHPLLGPYVEDLSKLAVTCYRDIHDLIDEGNKARTVAATNMNETSSRSHAVFTIFFTQQAVDDMTDLTTEKVS 224 (459)
Q Consensus 145 ~~~l~i~e~~~~g~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~~~~~~~s 224 (459)
...+.+++++.++++|.|++++.|.+++|++.+|..|.++|++++|.+|..|||||+||+|+|.+..... .....|
T Consensus 150 ~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~----~~~~~s 225 (325)
T 1bg2_A 150 KTNLSVHEDKNRVPYVKGCTERFVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQT----EQKLSG 225 (325)
T ss_dssp CCSBCEEECTTSCEEETTCCCEEECSHHHHHHHHHHHHHHTTTTCSCHHHHHHHSEEEEEEEEEEEETTT----CCEEEE
T ss_pred CCCceEEECCCCCEEecCceEEeCCCHHHHHHHHHHHHhhCceeecCCCCCCCCCeEEEEEEEEEEecCC----CcEEEE
Confidence 5678999999999999999999999999999999999999999999999999999999999999875432 334579
Q ss_pred ceeeeccCCCccccCCCCcccchhhhhhhhHhHHHHHHHHHHHHhhhhhhhhhhhcCCCCCccCCCCcchhhhhhccCCC
Q psy7270 225 KISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEISAVQHVAKKKKKADFIPYRDSVLTWLLRENLGGN 304 (459)
Q Consensus 225 ~L~~VDLAGsEr~~~~~~~g~r~~E~~~IN~SL~~L~~vI~aL~~~~~~~~~~~~~~~~~~ipyRdSkLT~lL~dsLgGn 304 (459)
+|+|||||||||..++++.|.+++|+.+||+||++||+||.+|++ +..||||||||||+||||+||||
T Consensus 226 kl~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~------------~~~hvPyRdSkLT~lLqdsLgGn 293 (325)
T 1bg2_A 226 KLYLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAE------------GSTYVPYRDSKMTRILQDSLGGN 293 (325)
T ss_dssp EEEEEECCCSCCCCCCSSSCTTSCCCCCCCHHHHHHHHHHHHHHT------------TCSCCCGGGSHHHHHGGGTSSSS
T ss_pred EEEEEECCCCCcccccCCccccchHHHHHHHHHHHHHHHHHHHHc------------CCCCCcccccHHHHHHHHHhCCC
Confidence 999999999999999999999999999999999999999999986 46799999999999999999999
Q ss_pred cceeeeeccCCCCCCHHHHHHHHHHHHHhhcc
Q psy7270 305 SKTAMIAAISPADINYDETLSTLRYADRAKQI 336 (459)
Q Consensus 305 s~t~~I~~isp~~~~~~eTlsTL~fa~rak~I 336 (459)
|+|+||+||||+..+++||++||+||+|||+|
T Consensus 294 s~t~mia~vsP~~~~~~ETl~TL~fa~rak~I 325 (325)
T 1bg2_A 294 CRTTIVICCSPSSYNESETKSTLLFGQRAKTI 325 (325)
T ss_dssp CEEEEEEEECCBGGGHHHHHHHHHHHHTSCCC
T ss_pred CcEEEEEEECCccccHHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999987
No 14
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=100.00 E-value=9.3e-86 Score=666.47 Aligned_cols=322 Identities=39% Similarity=0.608 Sum_probs=261.6
Q ss_pred CCcEEEEEcCCCCccccccCCceEEEEcCCeEEEECCCCCCCCCCCCceeecceeecCCCCCCCCCCCHHHHHHHHHHHH
Q psy7270 2 SSVKVAVRVRPFNNREISRDCKSIIEMTGNTTVIINPKLPPESKDTHKNFNFDYSYYSHDPSASNFATQAMVYSDIGEEM 81 (459)
Q Consensus 2 ~~vkV~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~f~FD~vf~~~d~~~~~~~sQ~~vy~~~~~pl 81 (459)
++|+|+|||||++..|...+...++.+.+...+++.+... ....+.|.||+||++. ++|++||+.++.|+
T Consensus 23 ~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~~~---~~~~~~F~FD~vf~~~-------~~Q~~Vy~~~~~pl 92 (373)
T 2wbe_C 23 QNIQVYVRVRPLNSRERCIRSAEVVDVVGPREVVTRHTLD---SKLTKKFTFDRSFGPE-------SKQCDVYSVVVSPL 92 (373)
T ss_dssp EECEEEEEECCCCHHHHHHTCCBCEEEETTTEEEESSSSS---STTCEEEECSEEECTT-------CCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChhhhccCCCceEEEcCCCeEEEecCCC---CCCceEEeccEEeccc-------cchhHHHHHHHHHH
Confidence 4799999999999999887778888887766666654321 2346899999999765 89999999999999
Q ss_pred HHHhhcCCceEEEeecCCCCCcceeeccCCC--------CCCCCChHHHHHHHHHHHHhhccC-------------Ccce
Q psy7270 82 LEHAFEGYNVCIFAYGQTGAGKSYTMMGRQE--------VEGEEGIIPMICQDLFKRIKDTTN-------------DKLK 140 (459)
Q Consensus 82 v~~~l~G~n~ti~aYGqTgSGKT~Tm~G~~~--------~~~~~Giipr~~~~lF~~i~~~~~-------------~~~~ 140 (459)
|+++++|||+||||||||||||||||+|+.. ....+|||||++++||+.+..... +.+.
T Consensus 93 v~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~v~vS~~EIYnE~i~ 172 (373)
T 2wbe_C 93 IEEVLNGYNCTVFAYGQTGTGKTHTMVGNETAELKSSWEDDSDIGIIPRALSHLFDELRMMEVEYTMRISYLELYNEELC 172 (373)
T ss_dssp HHHHHHTCCEEEEEECSTTSSHHHHHTBSCSCCSSSCSSCTTTBCHHHHHHHHHHHHHHHCCSCEEEEEEEEEEETTEEE
T ss_pred HHHHhCCceEEEEeecCCCCCcceecccCccccccccccccCCCcChHHHHHHHHHHHHhcCceEEEEEEEEEEeCCeEE
Confidence 9999999999999999999999999999764 234689999999999999875422 1122
Q ss_pred ecc---cCCcceEeeeC--CCCceecCCccccccCHHHHHHHHHHHhhccccccccCCCCCCCceEEEEEEEEEeeecCC
Q psy7270 141 SRW---KNSNLRVREHP--LLGPYVEDLSKLAVTCYRDIHDLIDEGNKARTVAATNMNETSSRSHAVFTIFFTQQAVDDM 215 (459)
Q Consensus 141 ~~~---~~~~l~i~e~~--~~g~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~ 215 (459)
++. ....+++++++ .++++|.||+++.|.+++|++.+|..|.++|++++|.+|..|||||+||+|+|.+.....
T Consensus 173 DLL~~~~~~~l~i~~~~~~~g~v~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~- 251 (373)
T 2wbe_C 173 DLLSTDDTTKIRIFDDSTKKGSVIIQGLEEIPVHSKDDVYKLLEKGKERRKTATTLMNAQSSRSHTVFSIVVHIRENGI- 251 (373)
T ss_dssp ESSCTTSCSCCCEEECSSSSSCEEETTCCCEEESSHHHHHHHHHHHHHHHTTTCSCHHHHHHHSEEEEEEEEEECTTCT-
T ss_pred ECCCCCCCCCceeEeccCCCCcEEecCceEEccCCHHHHHHHHHHHhhhhccccccCCCCCCCccEEEEEEEEEecCCC-
Confidence 222 23457788874 567999999999999999999999999999999999999999999999999998754221
Q ss_pred CCccceeEeceeeeccCCCccccCCCCc-ccchhhhhhhhHhHHHHHHHHHHHHhhhhhhhhhhhcCCCCCccCCCCcch
Q psy7270 216 TDLTTEKVSKISLVDLAGSERADSTGAK-GTRLKEGANINKSLTTLGKVISALAEISAVQHVAKKKKKADFIPYRDSVLT 294 (459)
Q Consensus 216 ~~~~~~~~s~L~~VDLAGsEr~~~~~~~-g~r~~E~~~IN~SL~~L~~vI~aL~~~~~~~~~~~~~~~~~~ipyRdSkLT 294 (459)
.+......|+|+|||||||||..++++. |.|++|+.+||+||++||+||.+|++ +..||||||||||
T Consensus 252 ~~~~~~~~skL~lVDLAGSEr~~~t~~~~g~rl~E~~~INkSL~aLg~vI~aL~~------------~~~hvPyRdSkLT 319 (373)
T 2wbe_C 252 EGEDMLKIGKLNLVDLAGSENVSKAGNEKGIRVRETVNINQSLLTLGRVITALVD------------RAPHVPYRESKLT 319 (373)
T ss_dssp TTCCEEEEEEEEEEECCCC--------------------CHHHHHHHHHHHHHHH------------CSSCCCGGGCHHH
T ss_pred CCCcceeEEEEEEEECCCCCccccccCccccchhHHHHHHHHHHHHHHHHHHHHc------------CCCcCccccchHH
Confidence 1223346799999999999999999987 99999999999999999999999986 4679999999999
Q ss_pred hhhhhccCCCcceeeeeccCCCCCCHHHHHHHHHHHHHhhcccccceecccc
Q psy7270 295 WLLRENLGGNSKTAMIAAISPADINYDETLSTLRYADRAKQIVCKAIVNEDA 346 (459)
Q Consensus 295 ~lL~dsLgGns~t~~I~~isp~~~~~~eTlsTL~fa~rak~I~n~~~~n~~~ 346 (459)
+||||+|||||+|+|||||||+..+++||++||+||+|||+|+|+|++|++.
T Consensus 320 ~lLqdsLgGnskt~mIa~isP~~~~~~ETlsTLrfA~rak~I~n~p~vN~~~ 371 (373)
T 2wbe_C 320 RLLQESLGGRTKTSIIATISPGHKDIEETLSTLEYAHRAKNIQNKPEVNQKL 371 (373)
T ss_dssp HHTHHHHHSSSEEEEEEEECCBGGGHHHHHHHHHHHHHHHTCEECCCCCEEC
T ss_pred HHHHHHhCCCceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccccceecccc
Confidence 9999999999999999999999999999999999999999999999999864
No 15
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=100.00 E-value=4.2e-84 Score=649.39 Aligned_cols=309 Identities=39% Similarity=0.589 Sum_probs=245.3
Q ss_pred CCcEEEEEcCCCCccccccCCceEEEEcCCeEEEECCCCCCCCCCCCceeecceeecCCCCCCCCCCCHHHHHHHHHHHH
Q psy7270 2 SSVKVAVRVRPFNNREISRDCKSIIEMTGNTTVIINPKLPPESKDTHKNFNFDYSYYSHDPSASNFATQAMVYSDIGEEM 81 (459)
Q Consensus 2 ~~vkV~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~f~FD~vf~~~d~~~~~~~sQ~~vy~~~~~pl 81 (459)
++|+|+|||||+++.|...+...++.+.++...+... ..+.|.||+||++. ++|++||+.++.|+
T Consensus 11 ~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~--------~~~~f~FD~Vf~~~-------~~Q~~vy~~~~~pl 75 (344)
T 4a14_A 11 APVRVALRVRPLLPKELLHGHQSCLQVEPGLGRVTLG--------RDRHFGFHVVLAED-------AGQEAVYQACVQPL 75 (344)
T ss_dssp CCCEEEEEECCCCHHHHHTTCCBCEEEEGGGTEEEET--------TTEEEECSEEECTT-------CCHHHHHHHHTHHH
T ss_pred cceEEEEEecccchHHHhccCeeEEEEcCCCceEEec--------ccceEEEEEEEecC-------cchhHHHHHHHHHH
Confidence 5899999999999999988877777765443322211 24789999999765 89999999999999
Q ss_pred HHHhhcCCceEEEeecCCCCCcceeeccCCCC---CCCCChHHHHHHHHHHHHhhccCCc--------------ceecc-
Q psy7270 82 LEHAFEGYNVCIFAYGQTGAGKSYTMMGRQEV---EGEEGIIPMICQDLFKRIKDTTNDK--------------LKSRW- 143 (459)
Q Consensus 82 v~~~l~G~n~ti~aYGqTgSGKT~Tm~G~~~~---~~~~Giipr~~~~lF~~i~~~~~~~--------------~~~~~- 143 (459)
|+++++|||+||||||||||||||||+|.... +.++|||||++++||+.+.+..... +.++.
T Consensus 76 v~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~v~vS~~EIYnE~i~DLL~ 155 (344)
T 4a14_A 76 LEAFFEGFNATVFAYGQTGSGKTYTMGEASVASLLEDEQGIVPRAMAEAFKLIDENDLLDCLVHVSYLEVYKEEFRDLLE 155 (344)
T ss_dssp HHHHHTTCCEEEEEESSTTSSHHHHHCC--------CCCCHHHHHHHHHHHHHHHCTTSEEEEEEEEEEEETTEEEETTS
T ss_pred HHHHHhhcCeeEEEecccCCCceEeecccchhhhhhcccCCchHHHHHHHHhcccccceeeEEEEehhhhhHHHHHHHHH
Confidence 99999999999999999999999999997532 3579999999999999998654322 22222
Q ss_pred ---cCCcceEeeeCCCCceecCCccccccCHHHHHHHHHHHhhccccccccCCCCCCCceEEEEEEEEEeeecCCC----
Q psy7270 144 ---KNSNLRVREHPLLGPYVEDLSKLAVTCYRDIHDLIDEGNKARTVAATNMNETSSRSHAVFTIFFTQQAVDDMT---- 216 (459)
Q Consensus 144 ---~~~~l~i~e~~~~g~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~---- 216 (459)
....+.+++++.++++|.||+++.|.+++|++.+|..|.++|.+++|.+|..|||||+||+|+|.+.......
T Consensus 156 ~~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~ 235 (344)
T 4a14_A 156 VGTASRDIQLREDERGNVVLCGVKEVDVEGLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLEQRGRAPSRLPRP 235 (344)
T ss_dssp SCCCGGGCEEEECTTSCEEEESCCCEECCSHHHHHHHHHHHHHHHHC------CCGGGSEEEEEEEEEEEC---------
T ss_pred hccccccceeeeccCCCEEEEeeeeccccCHHHHHHHHHhcchhcccCcchhhhcccccceEEEEEeeeCCCCcccCCCc
Confidence 3457899999999999999999999999999999999999999999999999999999999999987532211
Q ss_pred CccceeEeceeeeccCCCccccCCCCcccchhhhhhhhHhHHHHHHHHHHHHhhhhhhhhhhhcCCCCCccCCCCcchhh
Q psy7270 217 DLTTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEISAVQHVAKKKKKADFIPYRDSVLTWL 296 (459)
Q Consensus 217 ~~~~~~~s~L~~VDLAGsEr~~~~~~~g~r~~E~~~IN~SL~~L~~vI~aL~~~~~~~~~~~~~~~~~~ipyRdSkLT~l 296 (459)
.......|+|+|||||||||..++++.|.|++|+.+||+||++||+||.+|++. .++..||||||||||+|
T Consensus 236 ~~~~~~~skl~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~---------~~~~~hvPyRdSkLT~l 306 (344)
T 4a14_A 236 APGQLLVSKFHFVDLAGSERVLKTGSTGERLKESIQINSSLLALGNVISALGDP---------QRRGSHIPYRDSKITRI 306 (344)
T ss_dssp ---CEEEEEEEEEECCCCCCC--------------CCCSHHHHHHHHHHHHTCT---------TTTTSCCCGGGCHHHHH
T ss_pred cccceeeeeeeEEecccchhhcccCCchhhhhhheeechhHHhhhhHHHhcCCc---------cccCCCCCcchhhHHHH
Confidence 123345799999999999999999999999999999999999999999999863 13567999999999999
Q ss_pred hhhccCCCcceeeeeccCCCCCCHHHHHHHHHHHHHhh
Q psy7270 297 LRENLGGNSKTAMIAAISPADINYDETLSTLRYADRAK 334 (459)
Q Consensus 297 L~dsLgGns~t~~I~~isp~~~~~~eTlsTL~fa~rak 334 (459)
|||+|||||+|+||+||||+..+++||++||+||+|||
T Consensus 307 LqdsLgGnskt~mI~~vsP~~~~~~ETl~TL~fA~rAk 344 (344)
T 4a14_A 307 LKDSLGGNAKTVMIACVSPSSSDFDETLNTLNYASRAQ 344 (344)
T ss_dssp TTTSSSTTSEEEEEEEECCBGGGHHHHHHHHHHHHHTC
T ss_pred hHhhcCCCcceEEEEEeCCCccchhHHhhhhhhhhhcC
Confidence 99999999999999999999999999999999999996
No 16
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=100.00 E-value=3.3e-83 Score=644.13 Aligned_cols=309 Identities=35% Similarity=0.533 Sum_probs=240.1
Q ss_pred CCcEEEEEcCCCCccccccCCceEEEEcCCeEEEE-CCCCCC----CCCCCCceeecceeecCCCCCCCCCCCHHHHHHH
Q psy7270 2 SSVKVAVRVRPFNNREISRDCKSIIEMTGNTTVII-NPKLPP----ESKDTHKNFNFDYSYYSHDPSASNFATQAMVYSD 76 (459)
Q Consensus 2 ~~vkV~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~-~~~~~~----~~~~~~~~f~FD~vf~~~d~~~~~~~sQ~~vy~~ 76 (459)
++|||+|||||+++.|.. .+...+++..+.+ .+.... ......+.|.||+||++ ++|++||+.
T Consensus 24 ~~i~V~vRvRP~~~~e~~----~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~F~FD~Vf~~--------~sQ~~Vy~~ 91 (359)
T 3nwn_A 24 KKVHAFVRVKPTDDFAHE----MIRYGDDKRSIDIHLKKDIRRGVVNNQQTDWSFKLDGVLHD--------ASQDLVYET 91 (359)
T ss_dssp CCEEEEEEECCCSSCCTT----TEEECTTSSEEEEECCCCSSHHHHTTSCCEEEEECSEEEES--------CCHHHHHHH
T ss_pred CCEEEEEEcCCCCccccc----ceeecCCCcEEEEecCCccccccccCCcCceEeecCccCCC--------CCHHHHHHH
Confidence 589999999999876532 2333334444433 332211 11234578999999952 799999999
Q ss_pred HHHHHHHHhhcCCceEEEeecCCCCCcceeeccCCCCCCCCChHHHHHHHHHHHHhhccCCcce--------------ec
Q psy7270 77 IGEEMLEHAFEGYNVCIFAYGQTGAGKSYTMMGRQEVEGEEGIIPMICQDLFKRIKDTTNDKLK--------------SR 142 (459)
Q Consensus 77 ~~~plv~~~l~G~n~ti~aYGqTgSGKT~Tm~G~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~--------------~~ 142 (459)
+++|+|+++|+|||+||||||||||||||||+|+..++.++|||||++++||+.+.......+. ++
T Consensus 92 ~~~plv~~~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~Giipra~~~lF~~~~~~~~~~~~v~vS~~EIYnE~i~DL 171 (359)
T 3nwn_A 92 VAKDVVSQALDGYNGTIMCYGQTGAGKTYTMMGATENYKHRGILPRALQQVFRMIEERPTHAITVRVSYLEIYNESLFDL 171 (359)
T ss_dssp HTHHHHHHHHTTCCEEEEEEESTTSSHHHHHTBCSSCGGGBCHHHHHHHHHHHHHHTCTTSCEEEEEEEEEEETTEEEET
T ss_pred HHHHHHHHHhCCCCEEEEEeCCCCCCccEEeCCccCCccchhhHHHHHHHHHHHhhcCCCCcEEEEEEEEEEeccccccc
Confidence 9999999999999999999999999999999998776667999999999999998866544321 11
Q ss_pred c--------cCCcceEeeeCCCCceecCCccccccCHHHHHHHHHHHhhccccccccCCCCCCCceEEEEEEEEEeeecC
Q psy7270 143 W--------KNSNLRVREHPLLGPYVEDLSKLAVTCYRDIHDLIDEGNKARTVAATNMNETSSRSHAVFTIFFTQQAVDD 214 (459)
Q Consensus 143 ~--------~~~~l~i~e~~~~g~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~ 214 (459)
. ....+.+++++ .|++|.|++++.|.+++|++.+|..|.++|.+++|.+|..|||||+||+|+|.+.....
T Consensus 172 L~~~~~~~~~~~~~~~~~~~-~g~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~i~~~~~~~ 250 (359)
T 3nwn_A 172 LSTLPYVGPSVTPMTIVENP-QGVFIKGLSVHLTSQEEDAFSLLFEGETNRIIASHTMNKNSSRSHCIFTIYLEAHSRTL 250 (359)
T ss_dssp TSSSTTSCTTTSCCEEEEET-TEEEEETCCCEECSSHHHHHHHHHHHHHHHHHHHHHHTCCGGGCEEEEEEEEEEC----
T ss_pred cccccccccccccceEEecC-CceEEeccEEEEecCHHHHHHHHHhhhhhcccccccCccccCcceEEEEEEEEeecccc
Confidence 1 23346777776 57999999999999999999999999999999999999999999999999998764332
Q ss_pred CCCccceeEeceeeeccCCCccccCCCCcccchhhhhhhhHhHHHHHHHHHHHHhhhhhhhhhhhcCCCCCccCCCCcch
Q psy7270 215 MTDLTTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEISAVQHVAKKKKKADFIPYRDSVLT 294 (459)
Q Consensus 215 ~~~~~~~~~s~L~~VDLAGsEr~~~~~~~g~r~~E~~~IN~SL~~L~~vI~aL~~~~~~~~~~~~~~~~~~ipyRdSkLT 294 (459)
. ......|+|+|||||||||..++++.|.|++|+.+||+||++||+||.+|++. +..||||||||||
T Consensus 251 ~--~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~~Lg~vI~aL~~~-----------~~~hVPYRdSkLT 317 (359)
T 3nwn_A 251 S--EEKYITSKINLVDLAGSERLGKSGSEGQVLKEATYINKSLSFLEQAIIALGDQ-----------KRDHIPFRQCKLT 317 (359)
T ss_dssp -----CCEEEEEEEEECCCCC----------------CCSTHHHHHHHHHHHHHC----------------CCGGGSHHH
T ss_pred c--CcccccccceeeeccccccccccCCchhHHHhhhhhcccHHHHHHHHHHHHhc-----------CCCcCCcccCHHH
Confidence 2 23345799999999999999999999999999999999999999999999863 4579999999999
Q ss_pred hhhhhccCCCcceeeeeccCCCCCCHHHHHHHHHHHHHhhcc
Q psy7270 295 WLLRENLGGNSKTAMIAAISPADINYDETLSTLRYADRAKQI 336 (459)
Q Consensus 295 ~lL~dsLgGns~t~~I~~isp~~~~~~eTlsTL~fa~rak~I 336 (459)
+||||+|||||+|+|||||||+..+++||++||+||+|||+|
T Consensus 318 ~lLqdsLgGnskt~mI~~isP~~~~~~ETlsTL~fA~rak~I 359 (359)
T 3nwn_A 318 HALKDSLGGNCNMVLVTNIYGEAAQLEETLSSLRFASRMKLV 359 (359)
T ss_dssp HHTHHHHSSSSEEEEEEEECCSGGGHHHHHHHHHHHTTGGGC
T ss_pred HHHHHhcCCCccEEEEEEeCCchhhHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999999999999999987
No 17
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=100.00 E-value=3.8e-83 Score=643.96 Aligned_cols=317 Identities=32% Similarity=0.457 Sum_probs=255.7
Q ss_pred CcEEEEEcCCCCccccccCCceEEEEcCCeEEEEC-CCCCCCC--CCCCceeecceeecCCCCCCCCCCCHHHHHHHHHH
Q psy7270 3 SVKVAVRVRPFNNREISRDCKSIIEMTGNTTVIIN-PKLPPES--KDTHKNFNFDYSYYSHDPSASNFATQAMVYSDIGE 79 (459)
Q Consensus 3 ~vkV~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~~-~~~~~~~--~~~~~~f~FD~vf~~~d~~~~~~~sQ~~vy~~~~~ 79 (459)
+|||+|||||++..|...+...++.+.++.+++++ |...... ....+.|.||+||++. ++|++||+.++.
T Consensus 1 ~IrV~vRvRP~~~~E~~~~~~~~v~~~~~~~i~i~~~~~~~~~~~~~~~~~F~FD~Vf~~~-------~~Q~~Vy~~~~~ 73 (360)
T 1ry6_A 1 MIKVVVRKRPLSELEKKKKDSDIITVKNNCTLYIDEPRYKVDMTKYIERHEFIVDKVFDDT-------VDNFTVYENTIK 73 (360)
T ss_dssp CEEEEEEECCCCHHHHHTTCCBCEEEEETTEEEEEEEEEETTTEEEEEEEEEECSEEECTT-------CCHHHHHHHHTH
T ss_pred CeEEEEECCCCChHHhccCCceEEEECCCCEEEEeCCccccccccccccceEEeeeEecCC-------CCHHHHHHHHhh
Confidence 69999999999999998888888877766555543 2211000 0123689999999765 899999999999
Q ss_pred HHHHHhhc-CCceEEEeecCCCCCcceeeccCCC--CCCCCChHHHHHHHHHHHHhhccCC---------------ccee
Q psy7270 80 EMLEHAFE-GYNVCIFAYGQTGAGKSYTMMGRQE--VEGEEGIIPMICQDLFKRIKDTTND---------------KLKS 141 (459)
Q Consensus 80 plv~~~l~-G~n~ti~aYGqTgSGKT~Tm~G~~~--~~~~~Giipr~~~~lF~~i~~~~~~---------------~~~~ 141 (459)
|+|+++++ |||+||||||||||||||||+|+.. ....+|||||++++||..+.....+ .+.+
T Consensus 74 plv~~~~~~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~v~D 153 (360)
T 1ry6_A 74 PLIIDLYENGCVCSCFAYGQTGSGKTYTMLGSQPYGQSDTPGIFQYAAGDIFTFLNIYDKDNTKGIFISFYEIYCGKLYD 153 (360)
T ss_dssp HHHHHHHHHCCEEEEEEECCTTSSHHHHHHBSSSTTTSSCBCHHHHHHHHHHHHHHHHCSSSCEEEEEEEEEEETTEEEE
T ss_pred hhhhhhccCCceeEEEeeCCCCCCCCEEEecCCCCCCccCCCcHHHHHHHHHHHHHhhccCCceEEEEEEEEeeCCeeEE
Confidence 99999996 9999999999999999999999753 2356999999999999999754322 1111
Q ss_pred c-ccCCcceEeeeCCCCceecCCccccccCHHHHHHHHHHHhhccccccccCCCCCCCceEEEEEEEEEeeecCCCCccc
Q psy7270 142 R-WKNSNLRVREHPLLGPYVEDLSKLAVTCYRDIHDLIDEGNKARTVAATNMNETSSRSHAVFTIFFTQQAVDDMTDLTT 220 (459)
Q Consensus 142 ~-~~~~~l~i~e~~~~g~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~~~~ 220 (459)
+ .....+.+++++..+++|.||+++.|.+++|++.+|..|.++|.+++|.||..|||||+||+|+|.+.. ..
T Consensus 154 LL~~~~~~~~~e~~~~~~~v~gl~~~~V~s~~e~~~~l~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~-------~~ 226 (360)
T 1ry6_A 154 LLQKRKMVAALENGKKEVVVKDLKILRVLTKEELILKMIDGVLLRKIGVNSQNDESSRSHAILNIDLKDIN-------KN 226 (360)
T ss_dssp SCCC-----------CCBCGGGSCCEEECSHHHHHHHHHHHHHHHHHCTTCCTTGGGGSEEEEEEEEEETT-------TT
T ss_pred cccCCccceeeEcCCCCEEEcCcEEEEeCCHHHHHHHHHHHhhhhhcccccccCCCccceEEEEEEEEecc-------CC
Confidence 1 233456788999999999999999999999999999999999999999999999999999999998742 22
Q ss_pred eeEeceeeeccCCCccccCCCCcc-cchhhhhhhhHhHHHHHHHHHHHHhhhhhhhhhhhcCCCCCccCCCCcchhhhhh
Q psy7270 221 EKVSKISLVDLAGSERADSTGAKG-TRLKEGANINKSLTTLGKVISALAEISAVQHVAKKKKKADFIPYRDSVLTWLLRE 299 (459)
Q Consensus 221 ~~~s~L~~VDLAGsEr~~~~~~~g-~r~~E~~~IN~SL~~L~~vI~aL~~~~~~~~~~~~~~~~~~ipyRdSkLT~lL~d 299 (459)
...|+|+|||||||||..++++.| .+++|+.+||+||++||+||.+|+. +..||||||||||+||||
T Consensus 227 ~~~skL~lVDLAGSEr~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL~~------------~~~hvPyRdSkLT~lLqd 294 (360)
T 1ry6_A 227 TSLGKIAFIDLAGSERGADTVSQNKQTQTDGANINRSLLALKECIRAMDS------------DKNHIPFRDSELTKVLRD 294 (360)
T ss_dssp EEEEEEEEEECCCTTGGGGGGCSSHHHHHHHHHHHHHHHHHHHHHHHHTT------------STTSCCGGGCHHHHHTGG
T ss_pred cceeEEEEEECCCCccccccccccccchHHHHHHHHHHHHHHHHHHHHhc------------CCCCCccccCHHHHHHHH
Confidence 456999999999999999998876 5789999999999999999999975 567999999999999999
Q ss_pred ccCCCcceeeeeccCCCCCCHHHHHHHHHHHHHhhcccccceeccc
Q psy7270 300 NLGGNSKTAMIAAISPADINYDETLSTLRYADRAKQIVCKAIVNED 345 (459)
Q Consensus 300 sLgGns~t~~I~~isp~~~~~~eTlsTL~fa~rak~I~n~~~~n~~ 345 (459)
+|||||+|+|||||||+..+++||++||+||+|||+|+|.|+.|..
T Consensus 295 sLgGnskt~mIa~isP~~~~~~ETlsTLrfA~rak~i~n~~~~~~~ 340 (360)
T 1ry6_A 295 IFVGKSKSIMIANISPTISCCEQTLNTLRYSSRVKNKGNSKLEGKP 340 (360)
T ss_dssp GGSSSCEEEEEEEECCBGGGHHHHHHHHHHHHHHCC----------
T ss_pred HhCCCCeEEEEEEeCCCcccHHHHHHHHHHHHHHhhcccCcccCCC
Confidence 9999999999999999999999999999999999999997665543
No 18
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=100.00 E-value=3e-82 Score=631.58 Aligned_cols=303 Identities=36% Similarity=0.606 Sum_probs=250.4
Q ss_pred CCcEEEEEcCCCCccccccC-CceEEEEc--CCeEEEECCCCCCCCCCCCceeecceeecCCCCCCCCCCCHHHHHHHHH
Q psy7270 2 SSVKVAVRVRPFNNREISRD-CKSIIEMT--GNTTVIINPKLPPESKDTHKNFNFDYSYYSHDPSASNFATQAMVYSDIG 78 (459)
Q Consensus 2 ~~vkV~vRvRP~~~~E~~~~-~~~~v~~~--~~~~~~~~~~~~~~~~~~~~~f~FD~vf~~~d~~~~~~~sQ~~vy~~~~ 78 (459)
++|+|+|||||++..|.... ..+++.++ ++.++.... ....+.|.||+||++. ++|++||+.+
T Consensus 4 ~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~f~FD~Vf~~~-------~~Q~~Vy~~v- 69 (330)
T 2h58_A 4 GNIRVIARVRPVTKEDGEGPEATNAVTFDADDDSIIHLLH------KGKPVSFELDKVFSPQ-------ASQQDVFQEV- 69 (330)
T ss_dssp -CEEEEEEECCCCGGGCSSGGGSBCEEECSSCTTEEEEEE------TTEEEEEECSEEECTT-------CCHHHHHTTT-
T ss_pred CCEEEEEEcCCCChhhcccCCCccEEEEeCCCCcEEEEcC------CCCeeEEecCeEeCCC-------CCcHhHHHHH-
Confidence 68999999999999886532 33445543 333333221 1235789999999765 8999999985
Q ss_pred HHHHHHhhcCCceEEEeecCCCCCcceeeccCCCCCCCCChHHHHHHHHHHHHhhccCC---------------cceecc
Q psy7270 79 EEMLEHAFEGYNVCIFAYGQTGAGKSYTMMGRQEVEGEEGIIPMICQDLFKRIKDTTND---------------KLKSRW 143 (459)
Q Consensus 79 ~plv~~~l~G~n~ti~aYGqTgSGKT~Tm~G~~~~~~~~Giipr~~~~lF~~i~~~~~~---------------~~~~~~ 143 (459)
.|+|+++++|||+||||||||||||||||+|+.. ++|||||++++||..+.+.... .+.++.
T Consensus 70 ~~lv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~---~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL 146 (330)
T 2h58_A 70 QALVTSCIDGFNVCIFAYGQTGAGKTYTMEGTAE---NPGINQRALQLLFSEVQEKASDWEYTITVSAAEIYNEVLRDLL 146 (330)
T ss_dssp HHHHHHHHTTCCEEEEEESSTTSSHHHHHTBCSS---SBCHHHHHHHHHHHHHHTSCTTEEEEEEEEEEEEETTEEEETT
T ss_pred HHHHHHHhCCCEEEEEeECCCCCCCcEEEecCCC---CCcHHHHHHHHHHHhhhcccCCceEEEEEEEEEEECCChhhcc
Confidence 8999999999999999999999999999999764 5999999999999999764322 112222
Q ss_pred c---CCcc--eEeeeCCCCceecCCccccccCHHHHHHHHHHHhhccccccccCCCCCCCceEEEEEEEEEeeecCCCCc
Q psy7270 144 K---NSNL--RVREHPLLGPYVEDLSKLAVTCYRDIHDLIDEGNKARTVAATNMNETSSRSHAVFTIFFTQQAVDDMTDL 218 (459)
Q Consensus 144 ~---~~~l--~i~e~~~~g~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~~ 218 (459)
. ...+ ++++++.++++|.||+++.|.|++|++.+|..|.++|++++|.+|..|||||+||+|+|.+.....
T Consensus 147 ~~~~~~~l~i~~~~~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~---- 222 (330)
T 2h58_A 147 GKEPQEKLEIRLCPDGSGQLYVPGLTEFQVQSVDDINKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVRGVDCST---- 222 (330)
T ss_dssp SCSSCCCCCCEECTTSSCCEECTTCCCEEECSHHHHHHHHHHHHHHTTCTTCCSCSCGGGSEEEEEEEEEEEETTT----
T ss_pred cccccccceEEEeecCCCCEecCCCEEEEeCCHHHHHHHHHHHHhhCCcccccCCCCcCCccEEEEEEEEEEecCC----
Confidence 1 2234 444677899999999999999999999999999999999999999999999999999998865322
Q ss_pred cceeEeceeeeccCCCccccCCCCcccchhhhhhhhHhHHHHHHHHHHHHhhhhhhhhhhhcCCCCCccCCCCcchhhhh
Q psy7270 219 TTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEISAVQHVAKKKKKADFIPYRDSVLTWLLR 298 (459)
Q Consensus 219 ~~~~~s~L~~VDLAGsEr~~~~~~~g~r~~E~~~IN~SL~~L~~vI~aL~~~~~~~~~~~~~~~~~~ipyRdSkLT~lL~ 298 (459)
.....|+|+|||||||||..++++.|.|++|+.+||+||++||+||.+|++ +..||||||||||+|||
T Consensus 223 ~~~~~skL~lVDLAGSEr~~~t~~~g~r~~E~~~IN~SL~aLg~vI~aL~~------------~~~hvPyRdSkLT~lL~ 290 (330)
T 2h58_A 223 GLRTTGKLNLVDLAGSERVGKSGAEGSRLREAQHINKSLSALGDVIAALRS------------RQGHVPFRNSKLTYLLQ 290 (330)
T ss_dssp TEEEEEEEEEEECCCCCCCC------HHHHHHHHHHHHHHHHHHHHHHHHT------------TCSCCCGGGSHHHHHTH
T ss_pred CcEEEEEEEEEeCCCCCcccccCCchhhhHHHHHhhHhHHHHHHHHHHHhc------------CCCCCcccccHHHHHHH
Confidence 334679999999999999999999999999999999999999999999986 56799999999999999
Q ss_pred hccCCCcceeeeeccCCCCCCHHHHHHHHHHHHHhhccc
Q psy7270 299 ENLGGNSKTAMIAAISPADINYDETLSTLRYADRAKQIV 337 (459)
Q Consensus 299 dsLgGns~t~~I~~isp~~~~~~eTlsTL~fa~rak~I~ 337 (459)
|+|||||+|+|||||||+..+++||++||+||+|||+|+
T Consensus 291 dsLgGns~t~mI~~isP~~~~~~ETl~TL~fA~rak~i~ 329 (330)
T 2h58_A 291 DSLSGDSKTLMVVQVSPVEKNTSETLYSLKFAERVRSVE 329 (330)
T ss_dssp HHHSTTCEEEEEEEECCBGGGHHHHHHHHHHHHHHC---
T ss_pred HHhCCCceEEEEEEeCCccccHHHHHHHHHHHHHHhhCc
Confidence 999999999999999999999999999999999999985
No 19
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=100.00 E-value=6.6e-83 Score=645.24 Aligned_cols=310 Identities=37% Similarity=0.522 Sum_probs=239.6
Q ss_pred CCcEEEEEcCCCCccccccCCceEEEEcCCeEEEE-CCCCCCCC--CCCCceeecceeecCCCCCCCCCCCHHHHHHHHH
Q psy7270 2 SSVKVAVRVRPFNNREISRDCKSIIEMTGNTTVII-NPKLPPES--KDTHKNFNFDYSYYSHDPSASNFATQAMVYSDIG 78 (459)
Q Consensus 2 ~~vkV~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~-~~~~~~~~--~~~~~~f~FD~vf~~~d~~~~~~~sQ~~vy~~~~ 78 (459)
++|+|+|||||++..|...+...++.+.++..+++ .+...... ....+.|.||+||++. ++|++||+.++
T Consensus 51 ~~I~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~v~~~~~~~~~~~~~~~~~F~FD~VF~~~-------~sQ~~Vy~~~~ 123 (387)
T 2heh_A 51 HRICVCVRKRPLNKQELAKKEIDVISIPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDET-------ASNEVVYRFTA 123 (387)
T ss_dssp CSEEEEEEECCCCHHHHHTTCCBCEECCBSSEEEEEEEEECTTCCEEEEEEEEECSEEECTT-------CCHHHHHHHTT
T ss_pred CCeEEEEECCCCChHHhccCCceEEEECCCCEEEEeCCCccccccccccccEEeeeEEEecC-------CCceeehhhhH
Confidence 68999999999999999888888887766555444 33211110 1124689999999765 89999999999
Q ss_pred HHHHHHhhcCCceEEEeecCCCCCcceeeccCCC---CCCCCChHHHHHHHHHHHHhhccC----------------Ccc
Q psy7270 79 EEMLEHAFEGYNVCIFAYGQTGAGKSYTMMGRQE---VEGEEGIIPMICQDLFKRIKDTTN----------------DKL 139 (459)
Q Consensus 79 ~plv~~~l~G~n~ti~aYGqTgSGKT~Tm~G~~~---~~~~~Giipr~~~~lF~~i~~~~~----------------~~~ 139 (459)
.|+|+++++|||+||||||||||||||||+|+.. ....+|||||++++||..+..... +.+
T Consensus 124 ~plv~~~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~~~~Giipr~~~~lF~~~~~~~~~~~~~~V~vS~~EIYnE~v 203 (387)
T 2heh_A 124 RPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKAQNASKGIYAMASRDVFLLKNQPCYRKLGLEVYVTFFEIYNGKL 203 (387)
T ss_dssp HHHHHHHHTTCEEEEEEESCTTSSHHHHHC-----------CCHHHHHHHHHHHHHTSHHHHTTTCEEEEEEEEEETTEE
T ss_pred HHHHHHHhcCCceEEEEecCCCCCCCeEeccCCCCCCcccCCceehhhHHHHHHHhhcccccCceEEEEEEEEEecCCeE
Confidence 9999999999999999999999999999999642 234689999999999999864321 111
Q ss_pred eec-ccCCcceEeeeCCCCceecCCccccccCHHHHHHHHHHHhhccccccccCCCCCCCceEEEEEEEEEeeecCCCCc
Q psy7270 140 KSR-WKNSNLRVREHPLLGPYVEDLSKLAVTCYRDIHDLIDEGNKARTVAATNMNETSSRSHAVFTIFFTQQAVDDMTDL 218 (459)
Q Consensus 140 ~~~-~~~~~l~i~e~~~~g~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~~ 218 (459)
.++ .....+.+++++.++++|.||+++.|.+++|++.+|..|.++|.+++|.+|..|||||+||+|.|.+.
T Consensus 204 ~DLL~~~~~l~i~ed~~~~v~v~gl~~~~V~s~~e~~~ll~~G~~~R~~~~T~~N~~SSRSH~Ifti~v~~~-------- 275 (387)
T 2heh_A 204 FDLLNKKAKLRVLEDGKQQVQVVGLQEHLVNSADDVIKMIDMGSACRTSGQTFANSNSSRSHACFQIILRAK-------- 275 (387)
T ss_dssp EETTTTTEECEEEECTTCCEEEETCCCEEESSHHHHHHHHHHHHHHC---------CGGGSEEEEEEEEESS--------
T ss_pred EECCCCCccceEEEcCCCCEEecCCEEEEeCCHHHHHHHHHHHHhhCCcccCcCcCCcccceEEEEEEEEEC--------
Confidence 111 23457899999999999999999999999999999999999999999999999999999999999864
Q ss_pred cceeEeceeeeccCCCccccCCC-CcccchhhhhhhhHhHHHHHHHHHHHHhhhhhhhhhhhcCCCCCccCCCCcchhhh
Q psy7270 219 TTEKVSKISLVDLAGSERADSTG-AKGTRLKEGANINKSLTTLGKVISALAEISAVQHVAKKKKKADFIPYRDSVLTWLL 297 (459)
Q Consensus 219 ~~~~~s~L~~VDLAGsEr~~~~~-~~g~r~~E~~~IN~SL~~L~~vI~aL~~~~~~~~~~~~~~~~~~ipyRdSkLT~lL 297 (459)
....|+|+|||||||||..+++ +.+.+++|+.+||+||++||+||.+|++ +..||||||||||+||
T Consensus 276 -~~~~skL~lVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL~~------------~~~hvPYRdSKLTrlL 342 (387)
T 2heh_A 276 -GRMHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQ------------NKAHTPFRESKLTQVL 342 (387)
T ss_dssp -SSEEEEEEEEECCCCC---------------CHHHHHHHHHHHHHHHHHHT------------TCSCCCGGGSHHHHHT
T ss_pred -CeeeeEEEEEECCCCccccccccccccchhhHHHHhHHHHHHHHHHHHHhc------------CCCCCCccccHHHHHH
Confidence 1346999999999999998876 4678889999999999999999999986 5689999999999999
Q ss_pred hhc-cCCCcceeeeeccCCCCCCHHHHHHHHHHHHHhhccccc
Q psy7270 298 REN-LGGNSKTAMIAAISPADINYDETLSTLRYADRAKQIVCK 339 (459)
Q Consensus 298 ~ds-LgGns~t~~I~~isp~~~~~~eTlsTL~fa~rak~I~n~ 339 (459)
||+ |||||+|+|||||||+..+++||++||+||+|||+|++.
T Consensus 343 qdsllGgnskT~mIa~isP~~~~~~ETlsTLrfA~rak~I~~~ 385 (387)
T 2heh_A 343 RDSFIGENSRTCMIATISPGISSCEYTLNTLRYADRVKELSPH 385 (387)
T ss_dssp GGGGSSTTEEEEEEEEECCBGGGHHHHHHHHHHHHHHCC----
T ss_pred hhhccCCCCeEEEEEEeCCccchHHHHHHHHHHHHHhccCcCC
Confidence 999 599999999999999999999999999999999999864
No 20
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=100.00 E-value=4.2e-82 Score=635.53 Aligned_cols=310 Identities=35% Similarity=0.587 Sum_probs=241.8
Q ss_pred CCcEEEEEcCCCCccccccCCceEEEEc----CCeEEEECCCCCCCCCCCCceeecceeecCCCCCCCCCCCHHHHHHHH
Q psy7270 2 SSVKVAVRVRPFNNREISRDCKSIIEMT----GNTTVIINPKLPPESKDTHKNFNFDYSYYSHDPSASNFATQAMVYSDI 77 (459)
Q Consensus 2 ~~vkV~vRvRP~~~~E~~~~~~~~v~~~----~~~~~~~~~~~~~~~~~~~~~f~FD~vf~~~d~~~~~~~sQ~~vy~~~ 77 (459)
++|||+|||||++..|...+...++... +...+.+... ......+.|.||+||++. ++|++||+.+
T Consensus 5 gnIrV~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~f~FD~Vf~~~-------~~Q~~vf~~v 74 (349)
T 3t0q_A 5 GNIRVYCRVRPPLLNEPQDMSHILIEKFNEAKGAQSLTINRN---EGRILSYNFQFDMIFEPS-------HTNKEIFEEI 74 (349)
T ss_dssp CEEEEEEEECCCCTTSCCCCTTEEECCCBC--CBEEEEEEEC---C--CEEEEEEESEEECTT-------CCHHHHHHHH
T ss_pred CCcEEEEEeCCCCccccccCceEEEeeccCCCCceEEEEcCC---CCcccceeeecCEEECCC-------ccHHHHHHHH
Confidence 6899999999999999877665555422 1223333211 112345789999999765 8999999986
Q ss_pred HHHHHHHhhcCCceEEEeecCCCCCcceeeccCCCCCCCCChHHHHHHHHHHHHhhccCCc----------------cee
Q psy7270 78 GEEMLEHAFEGYNVCIFAYGQTGAGKSYTMMGRQEVEGEEGIIPMICQDLFKRIKDTTNDK----------------LKS 141 (459)
Q Consensus 78 ~~plv~~~l~G~n~ti~aYGqTgSGKT~Tm~G~~~~~~~~Giipr~~~~lF~~i~~~~~~~----------------~~~ 141 (459)
.|+|+++++|||+||||||||||||||||+|+ .+|||||++++||+.+....... +.+
T Consensus 75 -~~lv~~~l~G~n~tifAYGqTGSGKTyTm~g~-----~~Giipr~~~~lF~~~~~~~~~~~~~~v~vS~~EIYnE~i~D 148 (349)
T 3t0q_A 75 -RQLVQSSLDGYNVCIFAYGQTGSGKTYTMLNA-----GDGMIPMTLSHIFKWTANLKERGWNYEMECEYIEIYNETILD 148 (349)
T ss_dssp -HHHHHGGGTTCEEEEEEECSTTSSHHHHHHST-----TTSHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEETTEEEE
T ss_pred -HHHHHHHHCCcceeEEEeCCCCCCCceEeCCC-----CCchhhHHHHHHHHHHHHhhhcCceeEEEEEEEEEEcchhhc
Confidence 69999999999999999999999999999996 36999999999999987643321 111
Q ss_pred cc-------------cCCcceEeeeCC-CCceecCCccccccCHHHHHHHHHHHhhccccccccCCCCCCCceEEEEEEE
Q psy7270 142 RW-------------KNSNLRVREHPL-LGPYVEDLSKLAVTCYRDIHDLIDEGNKARTVAATNMNETSSRSHAVFTIFF 207 (459)
Q Consensus 142 ~~-------------~~~~l~i~e~~~-~g~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v 207 (459)
+. ....+.+++++. +|++|.|++++.|.+++|++.+|..|.++|.+++|.+|..|||||+||+|+|
T Consensus 149 LL~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v 228 (349)
T 3t0q_A 149 LLRDFKSHDNIDEILDSQKHDIRHDHEKQGTYITNVTRMKMTSTSQVDTILKKASKMRSTAATRSNERSSRSHSVFMVHI 228 (349)
T ss_dssp TTC---------------CCCEEEETTTTEEEETTCCCEECCCHHHHHHHHHHC------------CTGGGSEEEEEEEE
T ss_pred cccccccccccccccccccceeEEecCCCCEEEeCCEEEEeCCHHHHHHHHHHHHHhCcccccccccccCCcceEEEEEE
Confidence 11 234567777764 5799999999999999999999999999999999999999999999999999
Q ss_pred EEeeecCCCCccceeEeceeeeccCCCccccCCCCcccchhhhhhhhHhHHHHHHHHHHHHhhhhhhhhhhhcCCCCCcc
Q psy7270 208 TQQAVDDMTDLTTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEISAVQHVAKKKKKADFIP 287 (459)
Q Consensus 208 ~~~~~~~~~~~~~~~~s~L~~VDLAGsEr~~~~~~~g~r~~E~~~IN~SL~~L~~vI~aL~~~~~~~~~~~~~~~~~~ip 287 (459)
.+..... .....|+|+|||||||||..++++.|.|++|+.+||+||++||+||.+|++.. ++..|||
T Consensus 229 ~~~~~~~----~~~~~~kL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~---------~~~~hiP 295 (349)
T 3t0q_A 229 NGRNLHT----GETSQGKLNLVDLAGSERINSSAVTGERLRETQNINKSLSCLGDVIYALNTPD---------AGKRYIP 295 (349)
T ss_dssp EEEETTT----CCEEEEEEEEEECCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHHHHHSTT---------GGGSCCC
T ss_pred EEEecCC----CCeeEEEEEEEeCCCCCccccccCccccchhHHhhhHhHHHHHHHHHHHhccc---------CCCCcCC
Confidence 9875433 23456999999999999999999999999999999999999999999998642 2346999
Q ss_pred CCCCcchhhhhhccCCCcceeeeeccCCCCCCHHHHHHHHHHHHHhhcccccc
Q psy7270 288 YRDSVLTWLLRENLGGNSKTAMIAAISPADINYDETLSTLRYADRAKQIVCKA 340 (459)
Q Consensus 288 yRdSkLT~lL~dsLgGns~t~~I~~isp~~~~~~eTlsTL~fa~rak~I~n~~ 340 (459)
|||||||+||||+|||||+|+|||||||+..+++||++||+||+|++.|+..+
T Consensus 296 yRdSkLT~lLqdsLgGnskt~mi~~vsP~~~~~~ETl~TL~fA~rv~~ik~~~ 348 (349)
T 3t0q_A 296 FRNSKLTYLLQYSLVGDSKTLMFVNIPPDPNHISETLNSLRFASKVNSTKIAK 348 (349)
T ss_dssp GGGSHHHHHHGGGSSTTCEEEEEEEECCCGGGHHHHHHHHHHHHHHHC-----
T ss_pred CcCCHHHHHHHHhcCCCceEEEEEEeCCchhhHHHHHHHHHHHHHhhhcccCC
Confidence 99999999999999999999999999999999999999999999999998654
No 21
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=100.00 E-value=2.3e-82 Score=641.13 Aligned_cols=311 Identities=34% Similarity=0.523 Sum_probs=230.7
Q ss_pred CCcEEEEEcCCCCccccccCCceEEEE-------cCCeEEEECC-CCCC------CCCCCCceeecceeecCCCCCCCCC
Q psy7270 2 SSVKVAVRVRPFNNREISRDCKSIIEM-------TGNTTVIINP-KLPP------ESKDTHKNFNFDYSYYSHDPSASNF 67 (459)
Q Consensus 2 ~~vkV~vRvRP~~~~E~~~~~~~~v~~-------~~~~~~~~~~-~~~~------~~~~~~~~f~FD~vf~~~d~~~~~~ 67 (459)
++|||+|||||+++.|...++..++.. .++..+.+.. .... ......+.|.||+||++.
T Consensus 22 ~~irV~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~FD~Vf~~~------- 94 (376)
T 2rep_A 22 GNIRVFCRVRPVLPGEPTPPPGLLLFPSGPGGPSDPPTRLSLSRSDERRGTLSGAPAPPPRHDFSFDRVFPPG------- 94 (376)
T ss_dssp -CEEEEEEECCCCTTSCCCCGGGSBCCC------CCCCEEECCC-----------------CEEECSEEECTT-------
T ss_pred CCeEEEEEcCCCChhhcccCCceEEEccCcccccCCCcEEEEecCCccccccccccCCCCceeeeecEEcCCc-------
Confidence 689999999999999977653322211 2333333322 1100 011234689999999765
Q ss_pred CCHHHHHHHHHHHHHHHhhcCCceEEEeecCCCCCcceeeccCCC-CCCCCChHHHHHHHHHHHHhhccCCc--------
Q psy7270 68 ATQAMVYSDIGEEMLEHAFEGYNVCIFAYGQTGAGKSYTMMGRQE-VEGEEGIIPMICQDLFKRIKDTTNDK-------- 138 (459)
Q Consensus 68 ~sQ~~vy~~~~~plv~~~l~G~n~ti~aYGqTgSGKT~Tm~G~~~-~~~~~Giipr~~~~lF~~i~~~~~~~-------- 138 (459)
++|++||+.+ .|+|+++|+|||+||||||||||||||||+|+.. .+..+|||||++++||+.+.+.....
T Consensus 95 ~~Q~~Vy~~v-~~lv~~~l~G~N~tifAYGqTGSGKTyTM~G~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS 173 (376)
T 2rep_A 95 SGQDEVFEEI-AMLVQSALDGYPVCIFAYGQTGSGKTFTMEGGPGGDPQLEGLIPRALRHLFSVAQELSGQGWTYSFVAS 173 (376)
T ss_dssp CCHHHHHHHH-HHHHHGGGGTCCEEEEEECSTTSSHHHHHTBCSSCCGGGBCHHHHHHHHHHHHHHHGGGGTEEEEEEEE
T ss_pred ccchhhhhhH-HHHHHHhcCCCceEEEEeCCCCCCCceEeecCCCCCcccCCcHHHHHHHHHHHHHHhhcCCeEEEEEEE
Confidence 8999999986 5899999999999999999999999999999764 23468999999999999997643221
Q ss_pred --------ceeccc-------CCcceEeee--CCCCceecCCccccccCHHHHHHHHHHHhhccccccccCCCCCCCceE
Q psy7270 139 --------LKSRWK-------NSNLRVREH--PLLGPYVEDLSKLAVTCYRDIHDLIDEGNKARTVAATNMNETSSRSHA 201 (459)
Q Consensus 139 --------~~~~~~-------~~~l~i~e~--~~~g~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~ 201 (459)
+.++.. ...+.++++ +..+++|.|++++.|.+++|++.+|..|.++|.+++|.||..|||||+
T Consensus 174 ~~EIYnE~i~DLL~~~~~~~~~~~l~ir~~~~~~~~~~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~ 253 (376)
T 2rep_A 174 YVEIYNETVRDLLATGTRKGQGGECEIRRAGPGSEELTVTNARYVPVSCEKEVDALLHLARQNRAVARTAQNERSSRSHS 253 (376)
T ss_dssp EEEEETTEEEETTCCC--------CCEEEC---CCCEEETTCCCEEECSHHHHHHHHHHHHHHHHHCC-----CGGGSEE
T ss_pred EEEEECCEeeEccccccccccCCCceEEeccCCCCCEEECCcEEEEeCCHHHHHHHHHHHHhhcccccccCCCCCCCceE
Confidence 222222 235788888 578999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEEeeecCCCCccceeEeceeeeccCCCccccCCCCcc----cchhhhhhhhHhHHHHHHHHHHHHhhhhhhhhh
Q psy7270 202 VFTIFFTQQAVDDMTDLTTEKVSKISLVDLAGSERADSTGAKG----TRLKEGANINKSLTTLGKVISALAEISAVQHVA 277 (459)
Q Consensus 202 if~i~v~~~~~~~~~~~~~~~~s~L~~VDLAGsEr~~~~~~~g----~r~~E~~~IN~SL~~L~~vI~aL~~~~~~~~~~ 277 (459)
||+|+|.+..... .....|+|+|||||||||..++++.| .|++|+.+||+||++||+||.||++
T Consensus 254 Ifti~v~~~~~~~----~~~~~skL~lVDLAGSEr~~~t~~~g~~~~~rlkE~~~INkSL~aLg~vI~aL~~-------- 321 (376)
T 2rep_A 254 VFQLQISGEHSSR----GLQCGAPLSLVDLAGSERLDPGLALGPGERERLRETQAINSSLSTLGLVIMALSN-------- 321 (376)
T ss_dssp EEEEEEEEEESSS----CCEEEEEEEEEECCCCC------------------------CHHHHHHHHHHHHT--------
T ss_pred EEEEEEEEEecCC----CcEEEeEEEEEECCCCcccccccccCccccchhhHHhHhhHHHHHHHHHHHHHhc--------
Confidence 9999999865432 23456999999999999999999999 9999999999999999999999986
Q ss_pred hhcCCCCCccCCCCcchhhhhhccCCCcceeeeeccCCCCCCHHHHHHHHHHHHHhhcc
Q psy7270 278 KKKKKADFIPYRDSVLTWLLRENLGGNSKTAMIAAISPADINYDETLSTLRYADRAKQI 336 (459)
Q Consensus 278 ~~~~~~~~ipyRdSkLT~lL~dsLgGns~t~~I~~isp~~~~~~eTlsTL~fa~rak~I 336 (459)
+..||||||||||+||||+|||||+|+|||||||+..+++||++||+||+|++++
T Consensus 322 ----~~~hVPYRdSkLT~LLqdsLgGnskT~mIa~isP~~~~~~ETlsTLrfA~Rv~~~ 376 (376)
T 2rep_A 322 ----KESHVPYRNSKLTYLLQNSLGGSAKMLMFVNISPLEENVSESLNSLRFASKVNQC 376 (376)
T ss_dssp ----TCSCCCGGGSHHHHHTGGGTSTTCEEEEEEEECCCGGGHHHHHHHHHHHHHHC--
T ss_pred ----CCCccCCcCCHHHHHHHHhhCCCCeEEEEEEeCCchhhHHHHHHHHHHHHHHhcC
Confidence 5679999999999999999999999999999999999999999999999999864
No 22
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=100.00 E-value=9.5e-83 Score=647.78 Aligned_cols=312 Identities=37% Similarity=0.525 Sum_probs=244.1
Q ss_pred CCcEEEEEcCCCCccccccCCceEEEEcCCeEEEEC-CCCCCCC--CCCCceeecceeecCCCCCCCCCCCHHHHHHHHH
Q psy7270 2 SSVKVAVRVRPFNNREISRDCKSIIEMTGNTTVIIN-PKLPPES--KDTHKNFNFDYSYYSHDPSASNFATQAMVYSDIG 78 (459)
Q Consensus 2 ~~vkV~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~~-~~~~~~~--~~~~~~f~FD~vf~~~d~~~~~~~sQ~~vy~~~~ 78 (459)
++|+|+|||||++..|...+...++.+.++..+++. +...... ....+.|.||+||++. ++|++||+.++
T Consensus 71 ~~I~V~vRvRPl~~~E~~~~~~~~v~~~~~~~v~v~~~~~~~~~~~~~~~~~F~FD~VF~~~-------~tQ~~Vy~~~~ 143 (410)
T 1v8k_A 71 HRICVCVRKRPLNKQELAKKEIDVISVPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDET-------ASNEVVYRFTA 143 (410)
T ss_dssp CCEEEEEEECCCCHHHHHTTCCBCEECCSSSEEEEEEEEECTTCCEEEEEEEEECSEEECTT-------CCHHHHHHHTT
T ss_pred CCeEEEEEeCCCChhHhhcCCccEEEECCCCEEEEecCcccccccccccceEEeeeEEEecC-------CChhhhhHHHH
Confidence 689999999999999998888888887765555543 2211100 1124689999999765 89999999999
Q ss_pred HHHHHHhhcCCceEEEeecCCCCCcceeeccCCC---CCCCCChHHHHHHHHHHHHhhccC----C------------cc
Q psy7270 79 EEMLEHAFEGYNVCIFAYGQTGAGKSYTMMGRQE---VEGEEGIIPMICQDLFKRIKDTTN----D------------KL 139 (459)
Q Consensus 79 ~plv~~~l~G~n~ti~aYGqTgSGKT~Tm~G~~~---~~~~~Giipr~~~~lF~~i~~~~~----~------------~~ 139 (459)
.|+|+++++|||+||||||||||||||||+|+.. ....+|||||++++||..+..... . .+
T Consensus 144 ~plV~~~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~~~~Giipra~~~lF~~~~~~~~~~~~~~V~vS~lEIYnE~i 223 (410)
T 1v8k_A 144 RPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQNASKGIYAMASRDVFLLKNQPRYRNLNLEVYVTFFEIYNGKV 223 (410)
T ss_dssp HHHHHHHHTTCEEEEEEEESTTSSHHHHHHCBC----CBGGGSHHHHHHHHHHHHHTSHHHHTTCCEEEEEEEEEETTEE
T ss_pred HHHHHHHhcCCceeEEeecCCCCCCCeEeecCCCCCCccccCcchhhhHHHHHHHHhhhcccCccEEEEEEEEEeeCCEE
Confidence 9999999999999999999999999999999642 224689999999999999864321 1 11
Q ss_pred eec-ccCCcceEeeeCCCCceecCCccccccCHHHHHHHHHHHhhccccccccCCCCCCCceEEEEEEEEEeeecCCCCc
Q psy7270 140 KSR-WKNSNLRVREHPLLGPYVEDLSKLAVTCYRDIHDLIDEGNKARTVAATNMNETSSRSHAVFTIFFTQQAVDDMTDL 218 (459)
Q Consensus 140 ~~~-~~~~~l~i~e~~~~g~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~~ 218 (459)
.++ .....+.+++++.++++|.||+++.|.|++|++.+|..|.++|.+++|.+|..|||||+||+|+|.+.
T Consensus 224 ~DLL~~~~~l~i~ed~~~~v~V~gl~e~~V~s~~e~~~ll~~G~~~R~~~~T~~N~~SSRSH~Ifti~v~~~-------- 295 (410)
T 1v8k_A 224 FDLLNKKAKLRVLEDSRQQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLRTK-------- 295 (410)
T ss_dssp EETTTTTEEEEEEECSSCCEEEETCCCEEESSHHHHHHHHHHHHHTCC--------CCCSSEEEEEEEEESS--------
T ss_pred EECCCCCCCceEEECCCCCeEecCCEEEEeCCHHHHHHHHHHHHhhCCcccccCCCCCCCceEEEEEEEEeC--------
Confidence 111 23456899999999999999999999999999999999999999999999999999999999999864
Q ss_pred cceeEeceeeeccCCCccccCCC-CcccchhhhhhhhHhHHHHHHHHHHHHhhhhhhhhhhhcCCCCCccCCCCcchhhh
Q psy7270 219 TTEKVSKISLVDLAGSERADSTG-AKGTRLKEGANINKSLTTLGKVISALAEISAVQHVAKKKKKADFIPYRDSVLTWLL 297 (459)
Q Consensus 219 ~~~~~s~L~~VDLAGsEr~~~~~-~~g~r~~E~~~IN~SL~~L~~vI~aL~~~~~~~~~~~~~~~~~~ipyRdSkLT~lL 297 (459)
....|+|+|||||||||..+++ +.|.+++|+.+||+||++||+||.+|+. +..||||||||||+||
T Consensus 296 -~~~~skL~lVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL~~------------~~~hIPYRdSKLTrLL 362 (410)
T 1v8k_A 296 -GRLHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQ------------NKAHTPFRESKLTQVL 362 (410)
T ss_dssp -SSEEEEEEEEECCCCCC------------TTHHHHHHHHHHHHHHHHHHTC------------------CCCCHHHHHT
T ss_pred -CcceeEEEEEECCCccccccccccccchhHHHHHHhHHHHHHHHHHHHHhc------------CCCCCCcccchhHHHH
Confidence 1346999999999999998876 4678889999999999999999999985 4679999999999999
Q ss_pred hhc-cCCCcceeeeeccCCCCCCHHHHHHHHHHHHHhhcccccce
Q psy7270 298 REN-LGGNSKTAMIAAISPADINYDETLSTLRYADRAKQIVCKAI 341 (459)
Q Consensus 298 ~ds-LgGns~t~~I~~isp~~~~~~eTlsTL~fa~rak~I~n~~~ 341 (459)
||| |||||+|+|||||||+..+++||++||+||+|||.|..+|.
T Consensus 363 qdsllGgnskT~mIa~iSP~~~~~~ETlsTLrfA~rak~i~~~~~ 407 (410)
T 1v8k_A 363 RDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRVKELSHHHH 407 (410)
T ss_dssp THHHHSSSEEEEEEEEECCBGGGHHHHHHHHHHHHHHHTTC----
T ss_pred hhcccCCCceEEEEEEeCCccccHHHHHHHHHHHHHhccCCCCCC
Confidence 999 69999999999999999999999999999999999987764
No 23
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=100.00 E-value=5.2e-82 Score=635.24 Aligned_cols=308 Identities=35% Similarity=0.540 Sum_probs=241.5
Q ss_pred CCcEEEEEcCCCCccccccCCceEEEEc--CCeEEEECCCCCC----CCCCCCceeecceeecCCCCCCCCCCCHHHHHH
Q psy7270 2 SSVKVAVRVRPFNNREISRDCKSIIEMT--GNTTVIINPKLPP----ESKDTHKNFNFDYSYYSHDPSASNFATQAMVYS 75 (459)
Q Consensus 2 ~~vkV~vRvRP~~~~E~~~~~~~~v~~~--~~~~~~~~~~~~~----~~~~~~~~f~FD~vf~~~d~~~~~~~sQ~~vy~ 75 (459)
++|||+|||||+...+ ..++.+. +..+.+..+.... ......+.|.||+||. . ++|++||+
T Consensus 23 g~IrV~vRvRP~~~~~-----~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~F~fD~Vf~-~-------~sQ~~Vy~ 89 (358)
T 2nr8_A 23 KKVHAFVRVKPTDDFA-----HEMIRYGDDKRSIDIHLKKDIRRGVVNNQQTDWSFKLDGVLH-D-------ASQDLVYE 89 (358)
T ss_dssp CCEEEEEEECCCSSCC-----TTTEEECTTSSEEEEECCCCSSHHHHTTSCCEEEEECSEEEE-S-------CCHHHHHH
T ss_pred CCeEEEEEcCCCCCCc-----cceeEECCCCCEEEEecCCccccccccCCCcceEEECCeecC-C-------cCHHHHHH
Confidence 6899999999987543 2233433 3344444443221 1123457899999994 3 79999999
Q ss_pred HHHHHHHHHhhcCCceEEEeecCCCCCcceeeccCCCCCCCCChHHHHHHHHHHHHhhccCCcc--------------ee
Q psy7270 76 DIGEEMLEHAFEGYNVCIFAYGQTGAGKSYTMMGRQEVEGEEGIIPMICQDLFKRIKDTTNDKL--------------KS 141 (459)
Q Consensus 76 ~~~~plv~~~l~G~n~ti~aYGqTgSGKT~Tm~G~~~~~~~~Giipr~~~~lF~~i~~~~~~~~--------------~~ 141 (459)
.++.|+|+++++|||+||||||||||||||||+|+......+|||||++++||+.+.+.....+ .+
T Consensus 90 ~~~~~lv~~~l~G~N~tIfAYGqTGSGKTyTM~G~~~~~~~~Giipra~~~lF~~i~~~~~~~~~v~vS~~EIYnE~i~D 169 (358)
T 2nr8_A 90 TVAKDVVSQALDGYNGTIMCYGQTGAGKTYTMMGATENYKHRGILPRALQQVFRMIEERPTHAITVRVSYLEIYNESLFD 169 (358)
T ss_dssp HHTHHHHHHHHTTCCEEEEEEESTTSSHHHHHTBCSSCGGGBCHHHHHHHHHHHHHHTCTTSCEEEEEEEEEEETTEEEE
T ss_pred HHHHHHHHHHhCCCceEEEEECCCCCCCceEecccccccccCCcHHHHHHHHHHHHhhcCCceEEEEEEEEEEeCCeeeE
Confidence 9999999999999999999999999999999999876555799999999999999987654321 12
Q ss_pred cc--------cCCcceEeeeCCCCceecCCccccccCHHHHHHHHHHHhhccccccccCCCCCCCceEEEEEEEEEeeec
Q psy7270 142 RW--------KNSNLRVREHPLLGPYVEDLSKLAVTCYRDIHDLIDEGNKARTVAATNMNETSSRSHAVFTIFFTQQAVD 213 (459)
Q Consensus 142 ~~--------~~~~l~i~e~~~~g~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~ 213 (459)
+. ....+.+++++ .|++|.||+++.|.+++|++.+|..|.++|.+++|.+|..|||||+||+|+|.+....
T Consensus 170 LL~~~~~~~~~~~~l~i~e~~-~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~ 248 (358)
T 2nr8_A 170 LLSTLPYVGPSVTPMTIVENP-QGVFIKGLSVHLTSQEEDAFSLLFEGETNRIIASHTMNKNSSRSHCIFTIYLEAHSRT 248 (358)
T ss_dssp TTSSSTTSCTTTSCCEEEEET-TEEEEETCCCEECSSHHHHHHHHHHHHHHHHHHHHHHTCCGGGCEEEEEEEEEEC---
T ss_pred CcCCccccCccCCceEEEECC-CceEecCCEEEEcCCHHHHHHHHHHHHhccccccccCCCCCCcCeEEEEEEEEEEecc
Confidence 22 23568999998 7899999999999999999999999999999999999999999999999999986433
Q ss_pred CCCCccceeEeceeeeccCCCccccCCCCcccchhhhhhhhHhHHHHHHHHHHHHhhhhhhhhhhhcCCCCCccCCCCcc
Q psy7270 214 DMTDLTTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEISAVQHVAKKKKKADFIPYRDSVL 293 (459)
Q Consensus 214 ~~~~~~~~~~s~L~~VDLAGsEr~~~~~~~g~r~~E~~~IN~SL~~L~~vI~aL~~~~~~~~~~~~~~~~~~ipyRdSkL 293 (459)
.. ......|+|+|||||||||..++++.|.+++|+.+||+||++||+||.||++. +..|||||||||
T Consensus 249 ~~--~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~-----------~~~hiPyRdSkL 315 (358)
T 2nr8_A 249 LS--EEKYITSKINLVDLAGSERLGKSGSEGQVLKEATYINKSLSFLEQAIIALGDQ-----------KRDHIPFRQCKL 315 (358)
T ss_dssp ------CCEEEEEEEEECCCCC----------------CCSTHHHHHHHHHHHHHC----------------CCGGGSHH
T ss_pred CC--CCCEEEEEEEEEECCCCCcccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhC-----------CCCcCCCccCHH
Confidence 21 12345699999999999999999999999999999999999999999999863 457999999999
Q ss_pred hhhhhhccCCCcceeeeeccCCCCCCHHHHHHHHHHHHHhhcc
Q psy7270 294 TWLLRENLGGNSKTAMIAAISPADINYDETLSTLRYADRAKQI 336 (459)
Q Consensus 294 T~lL~dsLgGns~t~~I~~isp~~~~~~eTlsTL~fa~rak~I 336 (459)
|+||||+|||||+|+|||||||+..+++||++||+||+|||.|
T Consensus 316 T~LLqdsLgGnskt~mIa~isP~~~~~~ETlsTLrfA~Rak~I 358 (358)
T 2nr8_A 316 THALKDSLGGNCNMVLVTNIYGEAAQLEETLSSLRFASRMKLV 358 (358)
T ss_dssp HHHTHHHHSSSSEEEEEEEECCSGGGHHHHHHHHHHHTTGGGC
T ss_pred HHHHHHhcCCCCeEEEEEEeCCchhhHHHHHHHHHHHHHhccC
Confidence 9999999999999999999999999999999999999999986
No 24
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=100.00 E-value=2.9e-81 Score=628.43 Aligned_cols=308 Identities=32% Similarity=0.541 Sum_probs=243.3
Q ss_pred CCcEEEEEcCCCCc-cccccCCceEEEEc------CCeEE-EECCCCCCCCCCCCceeecceeecCCCCCCCCCCCHHHH
Q psy7270 2 SSVKVAVRVRPFNN-REISRDCKSIIEMT------GNTTV-IINPKLPPESKDTHKNFNFDYSYYSHDPSASNFATQAMV 73 (459)
Q Consensus 2 ~~vkV~vRvRP~~~-~E~~~~~~~~v~~~------~~~~~-~~~~~~~~~~~~~~~~f~FD~vf~~~d~~~~~~~sQ~~v 73 (459)
++|||+|||||++. .|. ....++.+. +...+ +..+. .....+.|.||+||++. ++|++|
T Consensus 3 ~nIrV~vRvRP~~~~~e~--~~~~~~~v~~~~~~~~~~~~~~~~~~----~~~~~~~f~FD~Vf~~~-------~~Q~~V 69 (347)
T 1f9v_A 3 GNIRVYCRIRPALKNLEN--SDTSLINVNEFDDNSGVQSMEVTKIQ----NTAQVHEFKFDKIFDQQ-------DTNVDV 69 (347)
T ss_dssp CEEEEEEEECCCCTTTCC--CTTEEEEECCCBTTTTBEEEEEEEGG----GTTCEEEEEESEEECTT-------CCHHHH
T ss_pred CCeEEEEEeCCCCccccc--CCCceEEEecccCCCCceEEEEecCC----CCcCceEEeeCEEECCC-------CCHHHH
Confidence 68999999999987 442 233333332 11222 22221 12235789999999765 899999
Q ss_pred HHHHHHHHHHHhhcCCceEEEeecCCCCCcceeeccCCCCCCCCChHHHHHHHHHHHHhhccCCc---------------
Q psy7270 74 YSDIGEEMLEHAFEGYNVCIFAYGQTGAGKSYTMMGRQEVEGEEGIIPMICQDLFKRIKDTTNDK--------------- 138 (459)
Q Consensus 74 y~~~~~plv~~~l~G~n~ti~aYGqTgSGKT~Tm~G~~~~~~~~Giipr~~~~lF~~i~~~~~~~--------------- 138 (459)
|+.+ .|+|+++++|||+||||||||||||||||+|+ ++|||||++++||+.+.......
T Consensus 70 y~~v-~~lv~~~l~G~n~tifAYGqTGSGKTyTM~G~-----~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE 143 (347)
T 1f9v_A 70 FKEV-GQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNP-----GDGIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNE 143 (347)
T ss_dssp HHHH-HHHHGGGGGTCCEEEEEECCTTSSHHHHHHST-----TTSHHHHHHHHHHHHHHHHGGGTCEEEEEEEEEEEETT
T ss_pred HHHH-HHHHHHhcCCceeEEEEECCCCCCCcEeccCC-----CCCchHHHHHHHHHHHHhhhhcCCceEEEEEEEEEECC
Confidence 9986 69999999999999999999999999999995 37999999999999997543221
Q ss_pred -ceeccc-----------CCcceEeeeC-CCCceecCCccccccCHHHHHHHHHHHhhccccccccCCCCCCCceEEEEE
Q psy7270 139 -LKSRWK-----------NSNLRVREHP-LLGPYVEDLSKLAVTCYRDIHDLIDEGNKARTVAATNMNETSSRSHAVFTI 205 (459)
Q Consensus 139 -~~~~~~-----------~~~l~i~e~~-~~g~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i 205 (459)
+.++.. ...+.+++++ .++++|.|++++.|.+++|++.+|..|.++|.+++|.||..|||||+||+|
T Consensus 144 ~i~DLL~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i 223 (347)
T 1f9v_A 144 NIVDLLRSDNNNKEDTSIGLKHEIRHDQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSASHSIFII 223 (347)
T ss_dssp EEEETTC-------------CCCEEEETTTTEEEETTCCCEECSSGGGHHHHHHHHC-----------CCGGGSEEEEEE
T ss_pred eeeeccCCccccccccccCCceeEEEecCCCceEecCCEEEEcCCHHHHHHHHHHHHhccceeeccCCCCCCCceEEEEE
Confidence 111111 1246787765 578999999999999999999999999999999999999999999999999
Q ss_pred EEEEeeecCCCCccceeEeceeeeccCCCccccCCCCcccchhhhhhhhHhHHHHHHHHHHHHhhhhhhhhhhhcCCCCC
Q psy7270 206 FFTQQAVDDMTDLTTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEISAVQHVAKKKKKADF 285 (459)
Q Consensus 206 ~v~~~~~~~~~~~~~~~~s~L~~VDLAGsEr~~~~~~~g~r~~E~~~IN~SL~~L~~vI~aL~~~~~~~~~~~~~~~~~~ 285 (459)
+|.+..... .....|+|+|||||||||..++++.|.|++|+.+||+||++||+||.+|++.. .+..|
T Consensus 224 ~v~~~~~~~----~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~---------~~~~h 290 (347)
T 1f9v_A 224 HLSGSNAKT----GAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPD---------STKRH 290 (347)
T ss_dssp EEEEECC------CCEEEEEEEEEECCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHTSCC------------CC
T ss_pred EEEEecCCC----CceeeeEEEEEECCCCccccccccchhhhHHHHHHhHHHHHHHHHHHHHhccc---------CCCCc
Confidence 999865332 23467999999999999999999999999999999999999999999998631 13579
Q ss_pred ccCCCCcchhhhhhccCCCcceeeeeccCCCCCCHHHHHHHHHHHHHhhcccccce
Q psy7270 286 IPYRDSVLTWLLRENLGGNSKTAMIAAISPADINYDETLSTLRYADRAKQIVCKAI 341 (459)
Q Consensus 286 ipyRdSkLT~lL~dsLgGns~t~~I~~isp~~~~~~eTlsTL~fa~rak~I~n~~~ 341 (459)
|||||||||+||||+|||||+|+|||||||+..+++||++||+||+||++|+..+.
T Consensus 291 iPyRdSkLT~lLqdsLgGnskt~mI~~vsP~~~~~~ETl~TLrfA~r~~~i~~~~r 346 (347)
T 1f9v_A 291 IPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRLVSR 346 (347)
T ss_dssp CCGGGSHHHHHHHHHHSTTCEEEEEEEECCSGGGHHHHHHHHHHHHHHCCTTTC--
T ss_pred CccccCHHHHHHHHHhCCCccEEEEEEeCCccccHHHHHHHHHHHHHHhhhccCCC
Confidence 99999999999999999999999999999999999999999999999999987764
No 25
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=100.00 E-value=8.3e-81 Score=636.68 Aligned_cols=307 Identities=35% Similarity=0.513 Sum_probs=243.5
Q ss_pred CCcEEEEEcCCCCccccccCCceEEEEcCCeEEEECCCCCCCCCCCCceeecceeecCCCCCCCCCCCHHHHHHHHHHHH
Q psy7270 2 SSVKVAVRVRPFNNREISRDCKSIIEMTGNTTVIINPKLPPESKDTHKNFNFDYSYYSHDPSASNFATQAMVYSDIGEEM 81 (459)
Q Consensus 2 ~~vkV~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~f~FD~vf~~~d~~~~~~~sQ~~vy~~~~~pl 81 (459)
++|+|+|||||+++.|...++..+...++..+.+..+..........+.|.||+||++. ++|++||+. +.|+
T Consensus 59 gnIrV~vRvRP~~~~E~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~F~FD~VF~~~-------~~Q~~Vf~~-v~pl 130 (412)
T 3u06_A 59 DNIRVFCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPL-------SSQSDIFEM-VSPL 130 (412)
T ss_dssp CSEEEEEEECCCCGGGTTSCBCEEEEEETTEEEEECCC-------CCCEEECSEEECTT-------CCHHHHHTT-THHH
T ss_pred CCEEEEEEcCCCCchhccCcceEEEecCCCEEEEecCCcccccccCceEEeeCeEcCCC-------CCHHHHHHH-HHHH
Confidence 68999999999999887654433333445555555443332233346789999999765 899999986 4699
Q ss_pred HHHhhcCCceEEEeecCCCCCcceeeccCCCCCCCCChHHHHHHHHHHHHhhccCCc----------------ceecc--
Q psy7270 82 LEHAFEGYNVCIFAYGQTGAGKSYTMMGRQEVEGEEGIIPMICQDLFKRIKDTTNDK----------------LKSRW-- 143 (459)
Q Consensus 82 v~~~l~G~n~ti~aYGqTgSGKT~Tm~G~~~~~~~~Giipr~~~~lF~~i~~~~~~~----------------~~~~~-- 143 (459)
|+++++|||+||||||||||||||||+|.+. .+|||||++++||+.+....... +.++.
T Consensus 131 v~~~l~G~n~tifAYGqTGSGKTyTM~G~~~---~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~ 207 (412)
T 3u06_A 131 IQSALDGYNICIFAYGQTGSGKTYTMDGVPE---SVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSN 207 (412)
T ss_dssp HHHHHTTCCEEEEEESSTTSSHHHHHTEETT---EECHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEETTEEEETTCC
T ss_pred HHHHHCCCceEEEEecCCCCCCeeEecCCCC---CCccHHHHHHHHHHhhhhhcccCceEEEEEEEEEEeCCeeEEcCCC
Confidence 9999999999999999999999999999764 59999999999999997543221 11112
Q ss_pred cCCc--ceEeeeCCCCceecCCccccccCHHHHHHHHHHHhhccccccccCCCCCCCceEEEEEEEEEeeecCCCCccce
Q psy7270 144 KNSN--LRVREHPLLGPYVEDLSKLAVTCYRDIHDLIDEGNKARTVAATNMNETSSRSHAVFTIFFTQQAVDDMTDLTTE 221 (459)
Q Consensus 144 ~~~~--l~i~e~~~~g~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~~~~~ 221 (459)
.... +.+.+++.++++|.|++++.|.+++|++.+|..|.++|++++|.+|..|||||+||+|+|.+..... ...
T Consensus 208 ~~~~~~i~~~~~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~----~~~ 283 (412)
T 3u06_A 208 EQKDMEIRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEK----QEI 283 (412)
T ss_dssp SCCCCCEEECSSCTTSEEETTCCCEECCSHHHHHHHHHHHHHHCC-----CHHHHTTCEEEEEEEEEEEETTT----TEE
T ss_pred CCCCceeeeeecCCCCEEEcceEEEEeCCHHHHHHHHHHHHhcccccccCCCCCCcCceEEEEEEEEEEeCCC----CCE
Confidence 2223 4455678889999999999999999999999999999999999999999999999999999875432 335
Q ss_pred eEeceeeeccCCCccccCCCCcccchhhhhhhhHhHHHHHHHHHHHHhhhhhhhhhhhcCCCCCccCCCCcchhhhhhcc
Q psy7270 222 KVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEISAVQHVAKKKKKADFIPYRDSVLTWLLRENL 301 (459)
Q Consensus 222 ~~s~L~~VDLAGsEr~~~~~~~g~r~~E~~~IN~SL~~L~~vI~aL~~~~~~~~~~~~~~~~~~ipyRdSkLT~lL~dsL 301 (459)
..|+|+|||||||||.. .|.|++|+.+||+||++||+||.||++ +..||||||||||+||||+|
T Consensus 284 ~~~kL~lVDLAGSEr~~----~~~rl~E~~~INkSL~aLg~vI~aL~~------------~~~hiPyRdSkLT~LLqdsL 347 (412)
T 3u06_A 284 SVGSINLVDLAGSESPK----TSTRMTETKNINRSLSELTNVILALLQ------------KQDHIPYRNSKLTHLLMPSL 347 (412)
T ss_dssp EEEEEEEEECCCCCC--------------CTTTHHHHHHHHHHHHHHT------------TCSCCCGGGSHHHHHHGGGT
T ss_pred EEEEEEEEECCCCCcCC----ccchhHhHHHHhHHHHHHHHHHHHHhc------------cCCCCCccccHHHHHHHHhc
Confidence 67999999999999974 468999999999999999999999986 56799999999999999999
Q ss_pred CCCcceeeeeccCCCCCCHHHHHHHHHHHHHhhccccc
Q psy7270 302 GGNSKTAMIAAISPADINYDETLSTLRYADRAKQIVCK 339 (459)
Q Consensus 302 gGns~t~~I~~isp~~~~~~eTlsTL~fa~rak~I~n~ 339 (459)
||||+|+|||||||+..+++||++||+||+|++.|+..
T Consensus 348 gGnskt~mI~~vsP~~~~~~ETl~TLrfA~rv~~i~~~ 385 (412)
T 3u06_A 348 GGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCKMT 385 (412)
T ss_dssp STTCEEEEEEEECCBGGGHHHHHHHHHHHHHHHHHCC-
T ss_pred CCCceEEEEEEeCCChhhHHHHHHHHHHHHHHhhcccc
Confidence 99999999999999999999999999999999999844
No 26
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.7e-80 Score=630.66 Aligned_cols=310 Identities=31% Similarity=0.514 Sum_probs=247.4
Q ss_pred CCcEEEEEcCCCCcc-ccccCCceEEE-EcC---CeE-EEECCCCCCCCCCCCceeecceeecCCCCCCCCCCCHHHHHH
Q psy7270 2 SSVKVAVRVRPFNNR-EISRDCKSIIE-MTG---NTT-VIINPKLPPESKDTHKNFNFDYSYYSHDPSASNFATQAMVYS 75 (459)
Q Consensus 2 ~~vkV~vRvRP~~~~-E~~~~~~~~v~-~~~---~~~-~~~~~~~~~~~~~~~~~f~FD~vf~~~d~~~~~~~sQ~~vy~ 75 (459)
|+|||+|||||+.+. |........+. .++ ... .+.... .....+.|.||+||++. ++|++||+
T Consensus 59 gnIrV~vRvRP~~~~~e~~~~~~~~v~~~~~~~~~~~~~~~~~~----~~~~~~~F~FD~VF~~~-------~~Q~~Vf~ 127 (403)
T 4etp_A 59 GNIRVYLRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQ----NTAQVHEFKFDKIFDQQ-------DTNVDVFK 127 (403)
T ss_dssp CSEEEEEEECCCCTTTSCSCCTTEEECCCBTTTTBEEEEEEECS----SSCEEEEEEESEEECTT-------CCHHHHHH
T ss_pred CCeEEEEEeCCCCCcccccCCCeeEEeeccCCCCceEEEEecCC----CCcCceEEEcCEEECCC-------CchHHHHH
Confidence 789999999999876 33222222222 111 112 222211 12235789999999765 89999999
Q ss_pred HHHHHHHHHhhcCCceEEEeecCCCCCcceeeccCCCCCCCCChHHHHHHHHHHHHhhccCCc----------------c
Q psy7270 76 DIGEEMLEHAFEGYNVCIFAYGQTGAGKSYTMMGRQEVEGEEGIIPMICQDLFKRIKDTTNDK----------------L 139 (459)
Q Consensus 76 ~~~~plv~~~l~G~n~ti~aYGqTgSGKT~Tm~G~~~~~~~~Giipr~~~~lF~~i~~~~~~~----------------~ 139 (459)
.+ .|+|+++++|||+||||||||||||||||+|+ .+|||||++++||..+....... +
T Consensus 128 ~v-~~lv~~~l~G~N~tifAYGqTGSGKTyTM~g~-----~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i 201 (403)
T 4etp_A 128 EV-GQLVQSSLDGYNVAIFAYGQTGSGKTFTMLNP-----GDGIIPSTISHIFNWINKLKTKGWDYKVNAEFIEIYNENI 201 (403)
T ss_dssp HH-HHHHHHHHTTCCEEEEEESCTTSSHHHHHHCT-----TTSHHHHHHHHHHHHHHHHHTTTEEEEEEEEEEEEETTEE
T ss_pred HH-HHHHHHHhCCcceEEEEECCCCCCCceEeCCC-----CCccchhHHHHHHHHHHhhhccCceEEEEEEEEEEeccee
Confidence 86 58999999999999999999999999999995 36999999999999987643322 1
Q ss_pred eecc-----------cCCcceEeeeCC-CCceecCCccccccCHHHHHHHHHHHhhccccccccCCCCCCCceEEEEEEE
Q psy7270 140 KSRW-----------KNSNLRVREHPL-LGPYVEDLSKLAVTCYRDIHDLIDEGNKARTVAATNMNETSSRSHAVFTIFF 207 (459)
Q Consensus 140 ~~~~-----------~~~~l~i~e~~~-~g~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v 207 (459)
.++. ....+.+++++. ++++|.|++++.|.++++++.+|..|.++|.+++|.+|..|||||+||+|+|
T Consensus 202 ~DLL~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v 281 (403)
T 4etp_A 202 VDLLRSDNNNKEDTSIGLKHEIRHDQETKTTTITNVTSVKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHL 281 (403)
T ss_dssp EETTCC--------CCSCCCCEEEETTTTEEEETTCCCEECCCHHHHHHHHHHHC--C----CHHHHHHHTSEEEEEEEE
T ss_pred eEccCCccccccccccCcceeeEEeCCCCCEEecCcEEEEeCCHHHHHHHHHHHHHhcccccccCCcccCCcccEEEEEE
Confidence 1111 123466777764 5689999999999999999999999999999999999999999999999999
Q ss_pred EEeeecCCCCccceeEeceeeeccCCCccccCCCCcccchhhhhhhhHhHHHHHHHHHHHHhhhhhhhhhhhcCCCCCcc
Q psy7270 208 TQQAVDDMTDLTTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEISAVQHVAKKKKKADFIP 287 (459)
Q Consensus 208 ~~~~~~~~~~~~~~~~s~L~~VDLAGsEr~~~~~~~g~r~~E~~~IN~SL~~L~~vI~aL~~~~~~~~~~~~~~~~~~ip 287 (459)
.+..... .....|+|+|||||||||..++++.|.|++|+.+||+||++||+||.||++.. ++..|||
T Consensus 282 ~~~~~~~----~~~~~~kL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~---------~~~~hiP 348 (403)
T 4etp_A 282 SGSNAKT----GAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSALGDVIHALGQPD---------STKRHIP 348 (403)
T ss_dssp EEEETTT----CCEEEEEEEEEECCCCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTSSC---------TTTSCCC
T ss_pred EEeecCC----CCeeEEEEEEEECCCCccccccCChhHHHHHHHHHHHHHHHHHHHHHHHhccc---------CCCCcCC
Confidence 9875432 23456999999999999999999999999999999999999999999998631 2446999
Q ss_pred CCCCcchhhhhhccCCCcceeeeeccCCCCCCHHHHHHHHHHHHHhhcccccce
Q psy7270 288 YRDSVLTWLLRENLGGNSKTAMIAAISPADINYDETLSTLRYADRAKQIVCKAI 341 (459)
Q Consensus 288 yRdSkLT~lL~dsLgGns~t~~I~~isp~~~~~~eTlsTL~fa~rak~I~n~~~ 341 (459)
|||||||+||||+|||||+|+||+||||+..+++||++||+||+|++.|+..|.
T Consensus 349 yRdSkLT~LLqdsLgGnskt~mi~~vsP~~~~~~ETl~TL~fA~rv~~~~~~~r 402 (403)
T 4etp_A 349 FRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRLVSR 402 (403)
T ss_dssp GGGSHHHHHTGGGTSTTCEEEEEEEECCSGGGHHHHHHHHHHHHHHCCC-----
T ss_pred cccchHHHHHHHhcCCCceEEEEEEeCCchhhHHHHHHHHHHHHHHhhcccCCC
Confidence 999999999999999999999999999999999999999999999999987663
No 27
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=100.00 E-value=3.4e-80 Score=618.92 Aligned_cols=300 Identities=33% Similarity=0.527 Sum_probs=225.1
Q ss_pred CCcEEEEEcCCCCccccccCCceEEEEcC---CeEEEECCCCCCCCCCCCceeecceeecCCCCCCCCCCCHHHHHHHHH
Q psy7270 2 SSVKVAVRVRPFNNREISRDCKSIIEMTG---NTTVIINPKLPPESKDTHKNFNFDYSYYSHDPSASNFATQAMVYSDIG 78 (459)
Q Consensus 2 ~~vkV~vRvRP~~~~E~~~~~~~~v~~~~---~~~~~~~~~~~~~~~~~~~~f~FD~vf~~~d~~~~~~~sQ~~vy~~~~ 78 (459)
++|||+|||||+++.|. .++..++...+ +..++++ .+.|.||+||++. ++|++||+.++
T Consensus 22 ~~VrV~vRvRP~~~~e~-~~~~~~v~~~~~~~~~~~~~~----------~~~F~FD~Vf~~~-------~sQ~~Vy~~~~ 83 (344)
T 3dc4_A 22 SAVRIAVREAPYRQFLG-RREPSVVQFPPWSDGKSLIVD----------QNEFHFDHAFPAT-------ISQDEMYQALI 83 (344)
T ss_dssp SEEEEEEEECCCC--------CCSEECCSSSCSSEEEET----------TEEEECSEEECTT-------CCHHHHHHHHT
T ss_pred CCeEEEEECCCCCcccc-cCCceEEEecCCCCCceEEec----------CcEEEcceEECCC-------CCHHHHHHhhc
Confidence 68999999999988763 34555665543 3344432 3789999999775 89999999999
Q ss_pred HHHHHHhhcCCceEEEeecCCCCCcceeeccCCC---CCCCCChHHHHHHHHHHHHhhccCCc-ceecccCCcceEee--
Q psy7270 79 EEMLEHAFEGYNVCIFAYGQTGAGKSYTMMGRQE---VEGEEGIIPMICQDLFKRIKDTTNDK-LKSRWKNSNLRVRE-- 152 (459)
Q Consensus 79 ~plv~~~l~G~n~ti~aYGqTgSGKT~Tm~G~~~---~~~~~Giipr~~~~lF~~i~~~~~~~-~~~~~~~~~l~i~e-- 152 (459)
.|+|+++++|||+||||||||||||||||+|+.. .+..+|||||++++||+.+....... ..+...-+.++|+.
T Consensus 84 ~plv~~~l~G~N~tifAYGQTGSGKTyTM~g~~~~~~~~~~~GIipra~~~LF~~i~~~~~~~~~~~~v~vS~~EIYnE~ 163 (344)
T 3dc4_A 84 LPLVDKLLEGFQCTALAYGQTGTGKSYSMGMTPPGEILPEHLGILPRALGDIFERVTARQENNKDAIQVYASFIEIYNEK 163 (344)
T ss_dssp HHHHHHHHHTCCEEEEEESSTTSSHHHHHTCSCGGGSCGGGCCHHHHHHHHHHHHHHHSSSSCSSCCEEEEEEEEEESSC
T ss_pred cchhhHhhCCCceEEEEecCCCCCCCeEEcCCCCCCCCcccCCcHHHHHHHHHHHHHhhhhccccceEEEEEEEEEeCCe
Confidence 9999999999999999999999999999998753 23468999999999999997654321 11111111122211
Q ss_pred ----------eCCCCceecCCccccccCHHHHHHHHHHHhhccccccccCCCCCCCceEEEEEEEEEeeecCCCCcccee
Q psy7270 153 ----------HPLLGPYVEDLSKLAVTCYRDIHDLIDEGNKARTVAATNMNETSSRSHAVFTIFFTQQAVDDMTDLTTEK 222 (459)
Q Consensus 153 ----------~~~~g~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~~~~~~ 222 (459)
.+..+..+.+++++.|.+++|++.+|..|.++|++++|.+|..|||||+||+|+|.+. ..
T Consensus 164 i~DLL~~~~~~~~~~~~~~~~~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~Ifti~v~~~----------~~ 233 (344)
T 3dc4_A 164 PFDLLGSTPHMPMVAARCQRCTCLPLHSQADLHHILELGTRNRRVRPTNMNSNSSRSHAIVTIHVKSK----------TH 233 (344)
T ss_dssp EEETTSSCTTSBCCSSTTTCSCCEECSSHHHHHHHHHHHHHTCC----------CCEEEEEEEEEECS----------SC
T ss_pred eEEccCCCCCCccccccccCceecccCCHHHHHHHHHHHHhhcccccccCCCCCCCceEEEEEEEEec----------Cc
Confidence 1223445679999999999999999999999999999999999999999999999752 23
Q ss_pred EeceeeeccCCCccccCCCCcccchhhhhhhhHhHHHHHHHHHHHHhhhhhhhhhhhcCCCCCccCCCCcchhhhhhccC
Q psy7270 223 VSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEISAVQHVAKKKKKADFIPYRDSVLTWLLRENLG 302 (459)
Q Consensus 223 ~s~L~~VDLAGsEr~~~~~~~g~r~~E~~~IN~SL~~L~~vI~aL~~~~~~~~~~~~~~~~~~ipyRdSkLT~lL~dsLg 302 (459)
.|+|+|||||||||..++++.|.+++|+.+||+||++||+||.+|++ +..||||||||||+||||+||
T Consensus 234 ~skl~lVDLAGSEr~~~t~~~g~r~~E~~~INkSL~aLg~vI~aL~~------------~~~hiPyRdSkLT~lLqdsLg 301 (344)
T 3dc4_A 234 HSRMNIVDLAGSEGVRRTGHEGVARQEGVNINLGLLSINKVVMSMAA------------GHTVIPYRDSVLTTVLQASLT 301 (344)
T ss_dssp EEEEEEEECCCCCCC-------------CCSCCHHHHHHHHHHHHHT------------TCSSCCGGGSHHHHHTTTTSS
T ss_pred EEEEEEEECCCCccccccccccchhHHHHHHhHhHHHHHHHHHHHhc------------cCCcCCccccHHHHHHHHHhC
Confidence 59999999999999999999999999999999999999999999986 467999999999999999999
Q ss_pred CCcceeeeeccCCCCCCHHHHHHHHHHHHHhhcccccce
Q psy7270 303 GNSKTAMIAAISPADINYDETLSTLRYADRAKQIVCKAI 341 (459)
Q Consensus 303 Gns~t~~I~~isp~~~~~~eTlsTL~fa~rak~I~n~~~ 341 (459)
|||+|+|||||||+..+++||++||+||+||+.....|.
T Consensus 302 Gnskt~mIa~isP~~~~~~ETlsTL~fA~ra~~~~~~~~ 340 (344)
T 3dc4_A 302 AQSYLTFLACISPHQCDLSETLSTLRFGTSAKAAALEHH 340 (344)
T ss_dssp TTCEEEEEEEECCCGGGHHHHHHHHHHHHHHHHHTTTC-
T ss_pred CCCEEEEEEEeCCchhhHHHHHHHHHHHHHHhhcCCCCC
Confidence 999999999999999999999999999999999876553
No 28
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=100.00 E-value=3.3e-74 Score=632.05 Aligned_cols=306 Identities=32% Similarity=0.547 Sum_probs=229.9
Q ss_pred CCCcEEEEEcC----CCCccccccCCceEE-EE-------cCCeEEEECCCCCCCCCCCCceeecceeecCCCCCCCCCC
Q psy7270 1 MSSVKVAVRVR----PFNNREISRDCKSII-EM-------TGNTTVIINPKLPPESKDTHKNFNFDYSYYSHDPSASNFA 68 (459)
Q Consensus 1 m~~vkV~vRvR----P~~~~E~~~~~~~~v-~~-------~~~~~~~~~~~~~~~~~~~~~~f~FD~vf~~~d~~~~~~~ 68 (459)
++.+||||||| |....|...+...+. .. ..+.+++..+.. .....+.|.||+||++. +
T Consensus 373 l~~~rV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~f~fd~vf~~~-------~ 442 (715)
T 4h1g_A 373 KGNIRVFCRIRNVSSSSSSSSSSSSEDIIQYEAPQDINDESKQELVITRNIN---NNFSNLRFLFDKIFERE-------Q 442 (715)
T ss_dssp SCSEEEEEEECCCC-------------BCEEECCC-------CEEEEEEEET---TEEEEEEEECSEEECSS-------C
T ss_pred HhcCeEEEEEeccccccccccccccccceeccCCCCCCCCCCCeEEEcCCCC---CCCCCeEEEeceEeCCC-------C
Confidence 36799999999 555445444433222 21 123344443322 23346899999999765 8
Q ss_pred CHHHHHHHHHHHHHHHhhcCCceEEEeecCCCCCcceeeccCCCCCCCCChHHHHHHHHHHHHhhccCCc----------
Q psy7270 69 TQAMVYSDIGEEMLEHAFEGYNVCIFAYGQTGAGKSYTMMGRQEVEGEEGIIPMICQDLFKRIKDTTNDK---------- 138 (459)
Q Consensus 69 sQ~~vy~~~~~plv~~~l~G~n~ti~aYGqTgSGKT~Tm~G~~~~~~~~Giipr~~~~lF~~i~~~~~~~---------- 138 (459)
+|++||+.+ .|+|+++++|||+||||||||||||||||+|+ ++|||||++++||+.|.+.....
T Consensus 443 ~q~~v~~~~-~~~v~~~~~G~n~~i~ayGqtgsGKT~Tm~g~-----~~Giipr~~~~lf~~~~~~~~~~~~~~v~~s~~ 516 (715)
T 4h1g_A 443 SNDLVFEEL-SQLIQCSLDGTNVCVFAYGQTGSGKTFTMSHP-----TNGMIPLSLKKIFNDIEELKEKGWSYTVRGKFI 516 (715)
T ss_dssp CHHHHGGGT-HHHHHHHHTTCCEEEEEESSTTSSHHHHHHCT-----TTSHHHHHHHHHHHHHHHHGGGTEEEEEEEEEE
T ss_pred CHHHHHHHH-HHHHHHHhCCceEEEEccCCCCCchhhccCCC-----CCCcHHHHHHHHHHHHHHhhcCCceEEEEEEEE
Confidence 999999875 59999999999999999999999999999995 48999999999999997643322
Q ss_pred ------ceecc-----cCCcceEeeeCCCC-ceecCCccccccCHHHHHHHHHHHhhccccccccCCCCCCCceEEEEEE
Q psy7270 139 ------LKSRW-----KNSNLRVREHPLLG-PYVEDLSKLAVTCYRDIHDLIDEGNKARTVAATNMNETSSRSHAVFTIF 206 (459)
Q Consensus 139 ------~~~~~-----~~~~l~i~e~~~~g-~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~ 206 (459)
+.++. ....+.+++++..| ++|.||+++.|.|++|++.+|..|.++|++++|.+|..|||||+||+|+
T Consensus 517 Eiyne~i~DLl~~~~~~~~~~~~~~~~~~g~~~v~~l~~~~v~~~~~~~~~~~~g~~~r~~~~t~~n~~ssRSH~i~~i~ 596 (715)
T 4h1g_A 517 EIYNEAIVDLLNPKIDPNTKYEIKHDDIAGKTTVTNVSTIDIKSPEQAITILNQANKKRSTAATKSNDHSSRSHSIFIID 596 (715)
T ss_dssp EEETTEEEESSSCCCCTTCCCCEEEETTTTEEEETTCCCEECSCHHHHHHHHHHHHCC----------CGGGSEEEEEEE
T ss_pred EEECCEEEECCCCCCCCCCcceeEEecCCCCEEEeCCEEEEcCCHHHHHHHHHHHHhccCcccccccCccccccEEEEEE
Confidence 11112 23456777766555 8999999999999999999999999999999999999999999999999
Q ss_pred EEEeeecCCCCccceeEeceeeeccCCCccccCCCCcccchhhhhhhhHhHHHHHHHHHHHHhhhhhhhhhhhcCCCCCc
Q psy7270 207 FTQQAVDDMTDLTTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEISAVQHVAKKKKKADFI 286 (459)
Q Consensus 207 v~~~~~~~~~~~~~~~~s~L~~VDLAGsEr~~~~~~~g~r~~E~~~IN~SL~~L~~vI~aL~~~~~~~~~~~~~~~~~~i 286 (459)
|.+..... .....|+|+|||||||||..++++.|.|++|+.+||+||++||+||.+|+.. +..||
T Consensus 597 ~~~~~~~~----~~~~~~~l~lvDLAGsEr~~~~~~~g~~~~E~~~IN~sL~~L~~vi~al~~~-----------~~~~v 661 (715)
T 4h1g_A 597 LQGYNSLT----KESSYGTLNLIDLAGSERLNNSRAEGDRLKETQAINKSLSCLGDVIHSLNLK-----------DGSHV 661 (715)
T ss_dssp EEEEETTT----CCEEEEEEEEEECCCCCC---------CHHHHHHHHHHHHHHHHHHHHHHHC-----------SCCCC
T ss_pred EEEEecCC----CCEeEEEEEEEeCCCcccccccCChhHHHHHHHHHHHHHHHHHHHHHHHhhc-----------CCCcC
Confidence 99875432 3356799999999999999999999999999999999999999999999862 56799
Q ss_pred cCCCCcchhhhhhccCCCcceeeeeccCCCCCCHHHHHHHHHHHHHhhccc
Q psy7270 287 PYRDSVLTWLLRENLGGNSKTAMIAAISPADINYDETLSTLRYADRAKQIV 337 (459)
Q Consensus 287 pyRdSkLT~lL~dsLgGns~t~~I~~isp~~~~~~eTlsTL~fa~rak~I~ 337 (459)
|||||||||||||+|||||+|+|||||||+..+++||++||+||+|||+|+
T Consensus 662 pyR~SkLT~lL~~slggn~~t~~i~~isp~~~~~~et~~tL~fa~r~~~i~ 712 (715)
T 4h1g_A 662 PYRNSKLTYLLKHSLGGNSKTLMFVNISPLTKDLNETINSLRFATKVNNTR 712 (715)
T ss_dssp CGGGCHHHHHTGGGTSTTCEEEEEEEECCBGGGHHHHHHHHHHHHHHCC--
T ss_pred CCccCHHHHHHHhhcCCCceEEEEEEECCChhhHHHHHHHHHHHHHhccce
Confidence 999999999999999999999999999999999999999999999999996
No 29
>2kin_B Kinesin; motor protein, cytoskeleton; HET: ADP; 2.00A {Rattus norvegicus} SCOP: c.37.1.9
Probab=100.00 E-value=6e-34 Score=232.56 Aligned_cols=98 Identities=43% Similarity=0.585 Sum_probs=89.4
Q ss_pred hhhhhHhHHHHHHHHHHHHhhhhhhhhhhhcCCCCCccCCCCcchhhhhhccCCCcceeeeeccCCCCCCHHHHHHHHHH
Q psy7270 250 GANINKSLTTLGKVISALAEISAVQHVAKKKKKADFIPYRDSVLTWLLRENLGGNSKTAMIAAISPADINYDETLSTLRY 329 (459)
Q Consensus 250 ~~~IN~SL~~L~~vI~aL~~~~~~~~~~~~~~~~~~ipyRdSkLT~lL~dsLgGns~t~~I~~isp~~~~~~eTlsTL~f 329 (459)
+.+||+||++||+||.+|++. +..||||||||||+||+|+|||||+|+||+||||+..+++||++||+|
T Consensus 1 a~~IN~SL~~Lg~vI~aL~~~-----------~~~hvPyRdSkLT~lL~dsLgGnskt~mi~~vsp~~~~~~ETl~TL~f 69 (100)
T 2kin_B 1 AKNINKSLSALGNVISALAEG-----------TKTHVPYRDSKMTRILQDSLDGNCRTTIVICCSPSVFNEAETKSTLMF 69 (100)
T ss_dssp CCBSSHHHHHHHHHHHHHHHT-----------CCSSCCGGGCHHHHHTHHHHHSSEEEEEEEEECCBGGGHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHHHhc-----------CCCCCCCccchHHHHHHHHhcCCCceeEEEEeCcccchHHHHHHHHHH
Confidence 357999999999999999863 467999999999999999999999999999999999999999999999
Q ss_pred HHHhhcccccceecccchH-HHHHHHHHHH
Q psy7270 330 ADRAKQIVCKAIVNEDANA-KLIRELKEEI 358 (459)
Q Consensus 330 a~rak~I~n~~~~n~~~~~-~~i~~l~~ei 358 (459)
|+||+.|+|.|++|++.+. .++++|++|+
T Consensus 70 A~rak~i~~~~~~n~~~~~~~l~~~~~~e~ 99 (100)
T 2kin_B 70 GQRAKTIKNTVSVNLELTAEEWKKKYEKEK 99 (100)
T ss_dssp HHHHHTCEEEECCEEECCHHHHHHHHHHHH
T ss_pred HHHHHhccCcceeccCCCHHHHHHHHHHhh
Confidence 9999999999999998765 4666677765
No 30
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=99.97 E-value=3.9e-31 Score=223.40 Aligned_cols=97 Identities=42% Similarity=0.591 Sum_probs=85.8
Q ss_pred hHhHHHHHHHHHHHHhhhhhhhhhhhcCCCCCccCCCCcchhhhhhccCCCcceeeeeccCCCCCCHHHHHHHHHHHHHh
Q psy7270 254 NKSLTTLGKVISALAEISAVQHVAKKKKKADFIPYRDSVLTWLLRENLGGNSKTAMIAAISPADINYDETLSTLRYADRA 333 (459)
Q Consensus 254 N~SL~~L~~vI~aL~~~~~~~~~~~~~~~~~~ipyRdSkLT~lL~dsLgGns~t~~I~~isp~~~~~~eTlsTL~fa~ra 333 (459)
|+||++||+||.+|++. +..||||||||||+||+|+|||||+|+||+||||+..+++||++||+||+||
T Consensus 1 N~SL~~Lg~vi~aL~~~-----------~~~hvPyRdSkLT~lL~dsLggn~~t~~i~~isp~~~~~~eTl~TL~fa~ra 69 (117)
T 3kin_B 1 NKSLSALGNVISALAEG-----------TKTHVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEAETKSTLMFGQRA 69 (117)
T ss_dssp CCHHHHHHHHHHHHHHS-----------CCSSCCGGGSHHHHHTHHHHHSSSEEEEEEEECCSGGGHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhC-----------CCCCCCCcchHHHHHHHHHcCCCccceeeeeeCCCcccHHHHHHHHHHHHHh
Confidence 79999999999999873 4579999999999999999999999999999999999999999999999999
Q ss_pred hcccccceecccchHH-HHHHHHHHHHHH
Q psy7270 334 KQIVCKAIVNEDANAK-LIRELKEEIQRL 361 (459)
Q Consensus 334 k~I~n~~~~n~~~~~~-~i~~l~~ei~~L 361 (459)
+.|+|+|.+|.+.... ++++++++++.+
T Consensus 70 k~i~n~~~~n~~~~~~~l~~~~~~e~~~~ 98 (117)
T 3kin_B 70 KTIKNTVSVNLELTAEEWKKKYEKEKEKN 98 (117)
T ss_dssp TTCEEEECCCBCCCHHHHHHHHHHHHHHH
T ss_pred CcccCCceecCcCCHHHHHHHHHHHHHHH
Confidence 9999999999987654 444455444433
No 31
>2o0a_A S.cerevisiae chromosome XVI reading frame ORF YPL253C; VIK1, motor homology domain, kinesin, motor domain, microtubule-binding; 1.60A {Saccharomyces cerevisiae}
Probab=99.75 E-value=4.5e-19 Score=168.41 Aligned_cols=249 Identities=8% Similarity=0.101 Sum_probs=153.9
Q ss_pred CCcEEEEEcCCCC-ccccccCCceEEEEcCCeEEEECCCCCCCCCCCCceeecceeecCCCCCCCCCCCHH--HHHHHHH
Q psy7270 2 SSVKVAVRVRPFN-NREISRDCKSIIEMTGNTTVIINPKLPPESKDTHKNFNFDYSYYSHDPSASNFATQA--MVYSDIG 78 (459)
Q Consensus 2 ~~vkV~vRvRP~~-~~E~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~f~FD~vf~~~d~~~~~~~sQ~--~vy~~~~ 78 (459)
|+||||+||||.. + ..+.+...+..+. ++. ..+.|.||+||.+. ++|+ +||+++
T Consensus 24 GnIRVFcrvrp~~~p------~~~~v~y~~~~I~-v~~--------~~k~f~FDRVf~p~-------s~Qe~~~vf~E~- 80 (298)
T 2o0a_A 24 GTMRCYAYVMEQNLP------ENLLFDYENGVIT-QGL--------SEHVYKFNRVIPHL-------KVSEDKFFTQEY- 80 (298)
T ss_dssp TCCEEEEEECGGGSC------TTEEEETTTTEEE-ETT--------TCCEEECSEEEETT-------TSCHHHHHHHTT-
T ss_pred CceEEEEEeccccCC------ccceeecCcccee-ecC--------CCceEEeeeEECcc-------ccccHHHHHHHH-
Confidence 7899999999954 2 1233555554433 232 12789999999776 8999 999995
Q ss_pred HHHHHHhhc-CCceEEEeecCCCCCcceeeccCCCCCCCCChHHHHHHHHHHHHhh-cc--------------CCcceec
Q psy7270 79 EEMLEHAFE-GYNVCIFAYGQTGAGKSYTMMGRQEVEGEEGIIPMICQDLFKRIKD-TT--------------NDKLKSR 142 (459)
Q Consensus 79 ~plv~~~l~-G~n~ti~aYGqTgSGKT~Tm~G~~~~~~~~Giipr~~~~lF~~i~~-~~--------------~~~~~~~ 142 (459)
.++|+.+|+ |||+||||||||||||| ||++..+|..... .. +....++
T Consensus 81 ~~~i~scLd~GyNvcIfSyGQTGsGKT----------------~ral~q~f~~~~~~~~~~Y~~tlq~veLy~Ne~~~DL 144 (298)
T 2o0a_A 81 SVYHDMCLNQKKNFNLISLSTTPHGSL----------------RESLIKFLAEKDTIYQKQYVITLQFVFLSDDEFSQDM 144 (298)
T ss_dssp HHHHHHHHHTTCCEEEEEECSSCCHHH----------------HHHHHHHHHSTTSHHHHHEEEEEEEEEEECC-CEEET
T ss_pred HHHHHHHHhCCCceEEEEECCCCCCcc----------------HHHHHHHHHHhhhhcccceEEEEEEEEEecCCchHHh
Confidence 899999999 99999999999999999 9999999987733 11 1111111
Q ss_pred c----cCCcceEeeeCCCCceecCCccccccC-HHHHHHHHHHHhhccccccccCCCCCCCceEEEEEEEEEeeecCCCC
Q psy7270 143 W----KNSNLRVREHPLLGPYVEDLSKLAVTC-YRDIHDLIDEGNKARTVAATNMNETSSRSHAVFTIFFTQQAVDDMTD 217 (459)
Q Consensus 143 ~----~~~~l~i~e~~~~g~~v~~l~~~~v~s-~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~ 217 (459)
. ....++|+.+..++.+|.|++.+.|.+ ++|+..++.-+.. +..|. +.-.|..+.+.........+
T Consensus 145 L~~~~~~~k~eIk~~~~g~~iv~~s~~i~V~~~~edv~~~~~~~~~------~~~~~---~gi~i~k~~~~~~~~~~~~~ 215 (298)
T 2o0a_A 145 LLDYSHNDKDSIKLKFEKHSISLDSKLVIIENGLEDLPLNFSCDEH------PNLPH---SGMGIIKVQFFPRDSKSDGN 215 (298)
T ss_dssp TSCCC------CEEEECSSCEEEESCCEEESSGGGGSCTTTTCC----------------CEEEEEEEEEEESCC-----
T ss_pred cCCCCCCCcceEEecCCCCEEecccEEEEccccHHHHHHHhhcccc------cccCC---CCceEEEEEEecCccccccc
Confidence 1 122457888888999999999999999 8988877722211 11111 23456666665522111111
Q ss_pred ccceeEeceeeeccCCCccccCCCCcccchhhhhhhhHhHHHHHHHHHHHHhhhhhhhhhhhcCCCCCccCCCCcchhhh
Q psy7270 218 LTTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEISAVQHVAKKKKKADFIPYRDSVLTWLL 297 (459)
Q Consensus 218 ~~~~~~s~L~~VDLAGsEr~~~~~~~g~r~~E~~~IN~SL~~L~~vI~aL~~~~~~~~~~~~~~~~~~ipyRdSkLT~lL 297 (459)
.....--++|+.+.-. ++...|.+. +.. . -+-.|+++-+|
T Consensus 216 -~~~~~~d~yf~e~~~~--------------------~~~~~l~~~---~~~-------------~---~~~~spi~~il 255 (298)
T 2o0a_A 216 -NDPVPVDFYFIELNNL--------------------KSIEQFDKS---IFK-------------K---ESCETPIALVL 255 (298)
T ss_dssp ---CCCEEEEEEEECSH--------------------HHHHHHHHH---HHT-------------C----CCCSHHHHHH
T ss_pred -CCCCceEEEEEEeCCH--------------------HHHHHHHhh---ccc-------------c---cccCCcHHHHH
Confidence 0011234677776432 122233332 111 1 35578888888
Q ss_pred hhccCCCcceeeeeccCCCCCCHHHHHHHHHHHHHhhcccccceec
Q psy7270 298 RENLGGNSKTAMIAAISPADINYDETLSTLRYADRAKQIVCKAIVN 343 (459)
Q Consensus 298 ~dsLgGns~t~~I~~isp~~~~~~eTlsTL~fa~rak~I~n~~~~n 343 (459)
+.-| -..+.++++++..+..+ -.-|..++++.+++|....+
T Consensus 256 ~~ll-~~tks~~~~~l~~~~~~----~~lL~~s~~i~~~~~~~~~~ 296 (298)
T 2o0a_A 256 KKLI-SDTKSFFLLNLNDSKNV----NKLLTISEEVQTQLCKRKKK 296 (298)
T ss_dssp HHHH-HHSBCEEEEEECCGGGH----HHHHHHHHHHHHHTC-----
T ss_pred HHHH-hcCcceEEEEecCCCch----hHHHHHHHHhhcccCccccc
Confidence 8766 34688899999875432 23788888888888765443
No 32
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=94.19 E-value=0.015 Score=51.47 Aligned_cols=38 Identities=16% Similarity=0.115 Sum_probs=27.2
Q ss_pred CHHHHHHHHHHHHHHHhhcCCceEEEeecCCCCCcceee
Q psy7270 69 TQAMVYSDIGEEMLEHAFEGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 69 sQ~~vy~~~~~plv~~~l~G~n~ti~aYGqTgSGKT~Tm 107 (459)
.|..+++.+ ..++.++--.-...++-||++|||||+.+
T Consensus 18 ~~~~~~~~~-~~~~~~~~~~~g~~~~l~G~~G~GKTtL~ 55 (180)
T 3ec2_A 18 SQNRALLTI-RVFVHNFNPEEGKGLTFVGSPGVGKTHLA 55 (180)
T ss_dssp HHHHHHHHH-HHHHHSCCGGGCCEEEECCSSSSSHHHHH
T ss_pred HHHHHHHHH-HHHHHhccccCCCEEEEECCCCCCHHHHH
Confidence 577777554 55665544333456788999999999987
No 33
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=93.44 E-value=0.033 Score=54.22 Aligned_cols=39 Identities=23% Similarity=0.405 Sum_probs=26.4
Q ss_pred CHHHHHHHHHHHHHHHhhcCCceEEEeecCCCCCcceeec
Q psy7270 69 TQAMVYSDIGEEMLEHAFEGYNVCIFAYGQTGAGKSYTMM 108 (459)
Q Consensus 69 sQ~~vy~~~~~plv~~~l~G~n~ti~aYGqTgSGKT~Tm~ 108 (459)
.+..++. .+..++...-.+....|+-||++|+||||.+.
T Consensus 132 ~~~~~~~-~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~ 170 (308)
T 2qgz_A 132 SRMEAFS-AILDFVEQYPSAEQKGLYLYGDMGIGKSYLLA 170 (308)
T ss_dssp HHHHHHH-HHHHHHHHCSCSSCCEEEEECSTTSSHHHHHH
T ss_pred HHHHHHH-HHHHHHHhccccCCceEEEECCCCCCHHHHHH
Confidence 4455665 33455555444445678899999999999873
No 34
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=93.43 E-value=0.033 Score=49.98 Aligned_cols=38 Identities=18% Similarity=0.276 Sum_probs=25.4
Q ss_pred CHHHHHHHHHHHHHHHhhcCCc-eEEEeecCCCCCcceee
Q psy7270 69 TQAMVYSDIGEEMLEHAFEGYN-VCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 69 sQ~~vy~~~~~plv~~~l~G~n-~ti~aYGqTgSGKT~Tm 107 (459)
.+..+++.+ ..++...-.+.. ..|+-||++|+|||+.+
T Consensus 33 ~~~~~~~~~-~~~~~~~~~~~~~~~~~l~G~~GtGKT~la 71 (202)
T 2w58_A 33 GRIKAIRFA-ERFVAEYEPGKKMKGLYLHGSFGVGKTYLL 71 (202)
T ss_dssp HHHHHHHHH-HHHHHHCCSSCCCCEEEEECSTTSSHHHHH
T ss_pred hHHHHHHHH-HHHHHHhhhccCCCeEEEECCCCCCHHHHH
Confidence 456666643 445544433322 67889999999999976
No 35
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=92.32 E-value=3.5 Score=43.21 Aligned_cols=36 Identities=22% Similarity=0.239 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHhhchhHHHHHHHHHhhhhc
Q psy7270 350 LIRELKEEIQRLRDLLKQEGIEVQEASELIMSKMAE 385 (459)
Q Consensus 350 ~i~~l~~ei~~L~~~l~~~~~~~~~~~~~~~~~~~~ 385 (459)
.+.+++.++..|++++.+....+......+..+...
T Consensus 457 e~~~~~~~i~~l~~~~~~~~~~l~~~~~~i~~~~~~ 492 (597)
T 3oja_B 457 EVNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRR 492 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 345566667777666655544444444445444433
No 36
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.15 E-value=0.6 Score=47.48 Aligned_cols=45 Identities=24% Similarity=0.453 Sum_probs=33.4
Q ss_pred eEEEeecCCCCCcceee--------------ccCCCCCCCCChHHHHHHHHHHHHhhcc
Q psy7270 91 VCIFAYGQTGAGKSYTM--------------MGRQEVEGEEGIIPMICQDLFKRIKDTT 135 (459)
Q Consensus 91 ~ti~aYGqTgSGKT~Tm--------------~G~~~~~~~~Giipr~~~~lF~~i~~~~ 135 (459)
-.|+-||++|+|||+.. -|+.-.....|-.++.+.++|.......
T Consensus 207 rGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~~~~Ge~e~~ir~lF~~A~~~a 265 (428)
T 4b4t_K 207 RGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLGEGPRMVRDVFRLARENA 265 (428)
T ss_dssp CEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCCSSCSHHHHHHHHHHHHHHHTC
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhccccchhHHHHHHHHHHHHHcC
Confidence 45999999999999653 3333233457888999999999876543
No 37
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=91.08 E-value=0.11 Score=45.04 Aligned_cols=29 Identities=14% Similarity=0.163 Sum_probs=22.3
Q ss_pred HHHHHHhhcCCceEEEeecCCCCCcceee
Q psy7270 79 EEMLEHAFEGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 79 ~plv~~~l~G~n~ti~aYGqTgSGKT~Tm 107 (459)
..++..+..+....|+-||++|+|||+.+
T Consensus 32 ~~l~~~l~~~~~~~~ll~G~~G~GKT~l~ 60 (195)
T 1jbk_A 32 RRTIQVLQRRTKNNPVLIGEPGVGKTAIV 60 (195)
T ss_dssp HHHHHHHTSSSSCEEEEECCTTSCHHHHH
T ss_pred HHHHHHHhcCCCCceEEECCCCCCHHHHH
Confidence 34455555676778899999999999876
No 38
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=90.69 E-value=0.084 Score=51.64 Aligned_cols=33 Identities=9% Similarity=0.046 Sum_probs=24.0
Q ss_pred HHHHHHHHHHhhcCCceEEEeecCCCCCcceee
Q psy7270 75 SDIGEEMLEHAFEGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 75 ~~~~~plv~~~l~G~n~ti~aYGqTgSGKT~Tm 107 (459)
..+...+-..+-.|...+|+-||++|+|||.++
T Consensus 30 ~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v 62 (318)
T 3te6_A 30 TRIFLPIYDSLMSSQNKLFYITNADDSTKFQLV 62 (318)
T ss_dssp HHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHH
Confidence 333333444445788889999999999999876
No 39
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=90.02 E-value=0.13 Score=44.72 Aligned_cols=29 Identities=14% Similarity=0.166 Sum_probs=22.1
Q ss_pred HHHHHHhhcCCceEEEeecCCCCCcceee
Q psy7270 79 EEMLEHAFEGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 79 ~plv~~~l~G~n~ti~aYGqTgSGKT~Tm 107 (459)
..++..+..+....|+-||++|+|||+.+
T Consensus 32 ~~l~~~l~~~~~~~vll~G~~G~GKT~la 60 (187)
T 2p65_A 32 RRAIQILSRRTKNNPILLGDPGVGKTAIV 60 (187)
T ss_dssp HHHHHHHTSSSSCEEEEESCGGGCHHHHH
T ss_pred HHHHHHHhCCCCCceEEECCCCCCHHHHH
Confidence 34455555566778899999999999876
No 40
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.61 E-value=1.2 Score=45.22 Aligned_cols=65 Identities=23% Similarity=0.260 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHH-HHhhc--CC--ceEEEeecCCCCCcceee--------------ccCCCCCCCCChHHHHHHHHHHHH
Q psy7270 71 AMVYSDIGEEML-EHAFE--GY--NVCIFAYGQTGAGKSYTM--------------MGRQEVEGEEGIIPMICQDLFKRI 131 (459)
Q Consensus 71 ~~vy~~~~~plv-~~~l~--G~--n~ti~aYGqTgSGKT~Tm--------------~G~~~~~~~~Giipr~~~~lF~~i 131 (459)
+++.+.+..|+. ...+. |. .-.|+-||++|+|||++. -|+.-.....|--.+.+..+|...
T Consensus 191 ~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~~~vGese~~ir~lF~~A 270 (434)
T 4b4t_M 191 EELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMYIGEGAKLVRDAFALA 270 (434)
T ss_dssp HHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCSSCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhhcccchHHHHHHHHHHHH
Confidence 344445555554 23333 32 346899999999999653 232222335788889999999887
Q ss_pred hhcc
Q psy7270 132 KDTT 135 (459)
Q Consensus 132 ~~~~ 135 (459)
....
T Consensus 271 ~~~a 274 (434)
T 4b4t_M 271 KEKA 274 (434)
T ss_dssp HHHC
T ss_pred HhcC
Confidence 6543
No 41
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=89.00 E-value=0.18 Score=48.42 Aligned_cols=37 Identities=14% Similarity=0.302 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHhhc--CCc--eEEEeecCCCCCcceee
Q psy7270 71 AMVYSDIGEEMLEHAFE--GYN--VCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 71 ~~vy~~~~~plv~~~l~--G~n--~ti~aYGqTgSGKT~Tm 107 (459)
..+.+.++..++...+. |.. ..|+-||++|+|||+..
T Consensus 13 ~~~~~~~~~~~~k~~l~~~~~~~p~~lLl~GppGtGKT~la 53 (293)
T 3t15_A 13 PAFMDKLVVHITKNFLKLPNIKVPLILGIWGGKGQGKSFQC 53 (293)
T ss_dssp HHHHHHHHHHHHHTTSCCTTCCCCSEEEEEECTTSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 45556666667766654 222 36888999999999865
No 42
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.38 E-value=1.8 Score=43.87 Aligned_cols=45 Identities=24% Similarity=0.535 Sum_probs=33.7
Q ss_pred eEEEeecCCCCCccee--------------eccCCCCCCCCChHHHHHHHHHHHHhhcc
Q psy7270 91 VCIFAYGQTGAGKSYT--------------MMGRQEVEGEEGIIPMICQDLFKRIKDTT 135 (459)
Q Consensus 91 ~ti~aYGqTgSGKT~T--------------m~G~~~~~~~~Giipr~~~~lF~~i~~~~ 135 (459)
-.|+-||+.|+|||.. +-|+.-.....|--.+.+..+|.......
T Consensus 217 rGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~sk~vGesek~ir~lF~~Ar~~a 275 (437)
T 4b4t_I 217 KGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPRLCRQIFKVAGENA 275 (437)
T ss_dssp SEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCCSSSSHHHHHHHHHHHHHHHTC
T ss_pred CCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhhccCchHHHHHHHHHHHHHhcC
Confidence 5799999999999964 33333233457888999999999887643
No 43
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=88.01 E-value=4.7 Score=41.19 Aligned_cols=19 Identities=16% Similarity=0.324 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHhhch
Q psy7270 352 RELKEEIQRLRDLLKQEGI 370 (459)
Q Consensus 352 ~~l~~ei~~L~~~l~~~~~ 370 (459)
+.+...|+.||.++++...
T Consensus 60 rDltkrINELKnqLEdlsK 78 (562)
T 3ghg_A 60 QDFTNRINKLKNSLFEYQK 78 (562)
T ss_dssp HHHHHHHHHHHHHHTHHHH
T ss_pred CcHHHHHHHHHHHHHHHHh
Confidence 3455666666666655533
No 44
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=87.16 E-value=0.21 Score=48.55 Aligned_cols=44 Identities=23% Similarity=0.235 Sum_probs=28.3
Q ss_pred ceeecceeecCCCCCCCCCCCHHHHHHHHHHHHHHHhhcCCceEEEeecCCCCCcceee
Q psy7270 49 KNFNFDYSYYSHDPSASNFATQAMVYSDIGEEMLEHAFEGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 49 ~~f~FD~vf~~~d~~~~~~~sQ~~vy~~~~~plv~~~l~G~n~ti~aYGqTgSGKT~Tm 107 (459)
..++|+.+++ |+.+... +...++.+....|+-||++|+|||+..
T Consensus 19 ~~~~f~~i~G-----------~~~~~~~----l~~~~~~~~~~~vLl~G~~GtGKT~la 62 (350)
T 1g8p_A 19 PVFPFSAIVG-----------QEDMKLA----LLLTAVDPGIGGVLVFGDRGTGKSTAV 62 (350)
T ss_dssp CCCCGGGSCS-----------CHHHHHH----HHHHHHCGGGCCEEEECCGGGCTTHHH
T ss_pred CCCCchhccC-----------hHHHHHH----HHHHhhCCCCceEEEECCCCccHHHHH
Confidence 4567877653 3444332 333444444556999999999999875
No 45
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=87.07 E-value=0.27 Score=44.56 Aligned_cols=24 Identities=33% Similarity=0.513 Sum_probs=19.1
Q ss_pred HHHHhhcCCceEEEeecCCCCCccee
Q psy7270 81 MLEHAFEGYNVCIFAYGQTGAGKSYT 106 (459)
Q Consensus 81 lv~~~l~G~n~ti~aYGqTgSGKT~T 106 (459)
.+..+++|.| ++..++||||||.+
T Consensus 44 ~i~~~~~~~~--~lv~~pTGsGKT~~ 67 (224)
T 1qde_A 44 AIMPIIEGHD--VLAQAQSGTGKTGT 67 (224)
T ss_dssp HHHHHHTTCC--EEEECCTTSSHHHH
T ss_pred HHHHHhcCCC--EEEECCCCCcHHHH
Confidence 3456678877 67889999999987
No 46
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=86.95 E-value=0.44 Score=44.77 Aligned_cols=39 Identities=10% Similarity=0.116 Sum_probs=25.6
Q ss_pred CHHHHHHHHHHH---HHHHhh---cCCceEEEeecCCCCCcceee
Q psy7270 69 TQAMVYSDIGEE---MLEHAF---EGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 69 sQ~~vy~~~~~p---lv~~~l---~G~n~ti~aYGqTgSGKT~Tm 107 (459)
.+...++.+... ++..+. ......|+-||++|+|||+..
T Consensus 37 ~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la 81 (272)
T 1d2n_A 37 KWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALA 81 (272)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHH
Confidence 344444444332 444443 566778999999999999875
No 47
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.67 E-value=1.9 Score=43.37 Aligned_cols=65 Identities=22% Similarity=0.304 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHH-HHhhc--CC--ceEEEeecCCCCCcceee--------------ccCCCCCCCCChHHHHHHHHHHHH
Q psy7270 71 AMVYSDIGEEML-EHAFE--GY--NVCIFAYGQTGAGKSYTM--------------MGRQEVEGEEGIIPMICQDLFKRI 131 (459)
Q Consensus 71 ~~vy~~~~~plv-~~~l~--G~--n~ti~aYGqTgSGKT~Tm--------------~G~~~~~~~~Giipr~~~~lF~~i 131 (459)
+++-+.+..|+. ...+. |. .-.|+-||++|+|||... -|+.-.....|--.+.+..+|...
T Consensus 158 ~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk~vGese~~vr~lF~~A 237 (405)
T 4b4t_J 158 KEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVRELFVMA 237 (405)
T ss_dssp HHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCSSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhccccchHHHHHHHHHHHH
Confidence 344444445554 23444 33 246999999999999753 333222335688899999999988
Q ss_pred hhcc
Q psy7270 132 KDTT 135 (459)
Q Consensus 132 ~~~~ 135 (459)
....
T Consensus 238 r~~a 241 (405)
T 4b4t_J 238 REHA 241 (405)
T ss_dssp HHTC
T ss_pred HHhC
Confidence 7643
No 48
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.56 E-value=3.2 Score=42.21 Aligned_cols=45 Identities=22% Similarity=0.334 Sum_probs=32.9
Q ss_pred eEEEeecCCCCCcceee--------------ccCCCCCCCCChHHHHHHHHHHHHhhcc
Q psy7270 91 VCIFAYGQTGAGKSYTM--------------MGRQEVEGEEGIIPMICQDLFKRIKDTT 135 (459)
Q Consensus 91 ~ti~aYGqTgSGKT~Tm--------------~G~~~~~~~~Giipr~~~~lF~~i~~~~ 135 (459)
-.|+-||++|+|||++. -|+.-.....|--...+..+|.......
T Consensus 216 rGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~sk~~Gese~~ir~~F~~A~~~~ 274 (437)
T 4b4t_L 216 KGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYAKEHE 274 (437)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCCSSSSHHHHHHHHHHHHHHHSC
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhccccchHHHHHHHHHHHHHHhcC
Confidence 57999999999999753 3332223457888899999998876543
No 49
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=86.41 E-value=0.31 Score=43.36 Aligned_cols=23 Identities=35% Similarity=0.616 Sum_probs=17.9
Q ss_pred HHHhhcCCceEEEeecCCCCCccee
Q psy7270 82 LEHAFEGYNVCIFAYGQTGAGKSYT 106 (459)
Q Consensus 82 v~~~l~G~n~ti~aYGqTgSGKT~T 106 (459)
+..+++|.| ++..++||||||.+
T Consensus 32 i~~~~~~~~--~li~~~TGsGKT~~ 54 (207)
T 2gxq_A 32 LPLALEGKD--LIGQARTGTGKTLA 54 (207)
T ss_dssp HHHHHTTCC--EEEECCTTSCHHHH
T ss_pred HHHHcCCCC--EEEECCCCChHHHH
Confidence 445677876 56778999999986
No 50
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=86.08 E-value=0.36 Score=43.00 Aligned_cols=25 Identities=32% Similarity=0.468 Sum_probs=18.3
Q ss_pred HHHHhhcCCceEEEeecCCCCCcceee
Q psy7270 81 MLEHAFEGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 81 lv~~~l~G~n~ti~aYGqTgSGKT~Tm 107 (459)
.+..+++|.| ++..++||||||.+.
T Consensus 33 ~i~~~~~~~~--~lv~apTGsGKT~~~ 57 (206)
T 1vec_A 33 SIPIALSGRD--ILARAKNGTGKSGAY 57 (206)
T ss_dssp HHHHHHTTCC--EEEECCSSSTTHHHH
T ss_pred HHHHHccCCC--EEEECCCCCchHHHH
Confidence 3445567866 577889999999653
No 51
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=85.57 E-value=0.33 Score=46.93 Aligned_cols=18 Identities=39% Similarity=0.665 Sum_probs=15.5
Q ss_pred ceEEEeecCCCCCcceee
Q psy7270 90 NVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 90 n~ti~aYGqTgSGKT~Tm 107 (459)
...++-||++|+|||+.+
T Consensus 37 ~~~lll~G~~GtGKT~la 54 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLL 54 (324)
T ss_dssp CSSEEEECSSSSSHHHHH
T ss_pred CCeEEEECCCCCcHHHHH
Confidence 346889999999999987
No 52
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=85.49 E-value=0.47 Score=44.69 Aligned_cols=19 Identities=32% Similarity=0.490 Sum_probs=15.8
Q ss_pred CceEEEeecCCCCCcceee
Q psy7270 89 YNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 89 ~n~ti~aYGqTgSGKT~Tm 107 (459)
....|+-||++|+|||+.+
T Consensus 50 ~~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp CCSEEEEESSSSSSHHHHH
T ss_pred CCCeEEEECCCCCcHHHHH
Confidence 3456899999999999865
No 53
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=85.42 E-value=0.39 Score=42.61 Aligned_cols=35 Identities=20% Similarity=0.126 Sum_probs=22.1
Q ss_pred CHHHHHHHHHHHHHHHhhcCCceEEEeecCCCCCcceee
Q psy7270 69 TQAMVYSDIGEEMLEHAFEGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 69 sQ~~vy~~~~~plv~~~l~G~n~ti~aYGqTgSGKT~Tm 107 (459)
.+.++.+.+ ...+-.+-...++-||++|+|||+.+
T Consensus 21 g~~~~~~~l----~~~l~~~~~~~~ll~G~~G~GKT~l~ 55 (226)
T 2chg_A 21 GQDEVIQRL----KGYVERKNIPHLLFSGPPGTGKTATA 55 (226)
T ss_dssp SCHHHHHHH----HHHHHTTCCCCEEEECSTTSSHHHHH
T ss_pred CcHHHHHHH----HHHHhCCCCCeEEEECCCCCCHHHHH
Confidence 445555433 22223343345999999999999875
No 54
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=85.27 E-value=0.39 Score=48.71 Aligned_cols=28 Identities=29% Similarity=0.399 Sum_probs=22.5
Q ss_pred HHHHHhhcCCceEEEeecCCCCCcceee
Q psy7270 80 EMLEHAFEGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 80 plv~~~l~G~n~ti~aYGqTgSGKT~Tm 107 (459)
+++..++..-.+.|+-.|+||||||.||
T Consensus 157 ~~L~~l~~~~ggii~I~GpnGSGKTTlL 184 (418)
T 1p9r_A 157 DNFRRLIKRPHGIILVTGPTGSGKSTTL 184 (418)
T ss_dssp HHHHHHHTSSSEEEEEECSTTSCHHHHH
T ss_pred HHHHHHHHhcCCeEEEECCCCCCHHHHH
Confidence 4556666666678899999999999987
No 55
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=85.11 E-value=0.46 Score=42.98 Aligned_cols=20 Identities=15% Similarity=0.353 Sum_probs=17.0
Q ss_pred CCceEEEeecCCCCCcceee
Q psy7270 88 GYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 88 G~n~ti~aYGqTgSGKT~Tm 107 (459)
+....|+-||++|+|||+.+
T Consensus 50 ~~~~~~ll~G~~G~GKT~la 69 (242)
T 3bos_A 50 DGVQAIYLWGPVKSGRTHLI 69 (242)
T ss_dssp CSCSEEEEECSTTSSHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHH
Confidence 35677899999999999876
No 56
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=85.04 E-value=0.39 Score=44.19 Aligned_cols=24 Identities=25% Similarity=0.483 Sum_probs=19.0
Q ss_pred HHHHhhcCCceEEEeecCCCCCccee
Q psy7270 81 MLEHAFEGYNVCIFAYGQTGAGKSYT 106 (459)
Q Consensus 81 lv~~~l~G~n~ti~aYGqTgSGKT~T 106 (459)
.+..+++|.+ ++..++||||||.+
T Consensus 59 ~i~~~~~~~~--~l~~a~TGsGKT~~ 82 (245)
T 3dkp_A 59 AIPVMLHGRE--LLASAPTGSGKTLA 82 (245)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHH
T ss_pred HHHHHhCCCC--EEEECCCCCcHHHH
Confidence 3455678877 57889999999986
No 57
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=84.95 E-value=0.35 Score=47.37 Aligned_cols=38 Identities=26% Similarity=0.267 Sum_probs=27.3
Q ss_pred CHHHHHHHHHHHHHHHhhcCCce--EEEeecCCCCCcceee
Q psy7270 69 TQAMVYSDIGEEMLEHAFEGYNV--CIFAYGQTGAGKSYTM 107 (459)
Q Consensus 69 sQ~~vy~~~~~plv~~~l~G~n~--ti~aYGqTgSGKT~Tm 107 (459)
.|+.+.... ..++..+..|... .++-||++|+|||+..
T Consensus 48 G~~~~~~~l-~~l~~~~~~~~~~~~~vLl~GppGtGKT~la 87 (368)
T 3uk6_A 48 GQLAARRAA-GVVLEMIREGKIAGRAVLIAGQPGTGKTAIA 87 (368)
T ss_dssp SCHHHHHHH-HHHHHHHHTTCCTTCEEEEEESTTSSHHHHH
T ss_pred ChHHHHHHH-HHHHHHHHcCCCCCCEEEEECCCCCCHHHHH
Confidence 455665443 4566666677654 8899999999999875
No 58
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=84.76 E-value=0.42 Score=44.70 Aligned_cols=18 Identities=22% Similarity=0.464 Sum_probs=15.3
Q ss_pred ceEEEeecCCCCCcceee
Q psy7270 90 NVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 90 n~ti~aYGqTgSGKT~Tm 107 (459)
+..|+-||++|+|||+..
T Consensus 29 ~~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 29 DKPVLIIGERGTGKELIA 46 (265)
T ss_dssp CSCEEEECCTTSCHHHHH
T ss_pred CCCEEEECCCCCcHHHHH
Confidence 456888999999999865
No 59
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=84.73 E-value=0.25 Score=45.50 Aligned_cols=25 Identities=32% Similarity=0.634 Sum_probs=19.4
Q ss_pred HHHHhhcCCceEEEeecCCCCCcceee
Q psy7270 81 MLEHAFEGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 81 lv~~~l~G~n~ti~aYGqTgSGKT~Tm 107 (459)
.+..+++|.| ++..++||||||.+.
T Consensus 60 ai~~i~~~~~--~li~apTGsGKT~~~ 84 (237)
T 3bor_A 60 AIIPCIKGYD--VIAQAQSGTGKTATF 84 (237)
T ss_dssp HHHHHHTTCC--EEECCCSSHHHHHHH
T ss_pred HHHHHhCCCC--EEEECCCCCcHHHHH
Confidence 4455678877 578899999999763
No 60
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=83.89 E-value=0.23 Score=48.71 Aligned_cols=39 Identities=23% Similarity=0.324 Sum_probs=25.8
Q ss_pred CCHHHHHHHHHHHHHHHhh-cCCceEEEeecCCCCCcceee
Q psy7270 68 ATQAMVYSDIGEEMLEHAF-EGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 68 ~sQ~~vy~~~~~plv~~~l-~G~n~ti~aYGqTgSGKT~Tm 107 (459)
..++...+.+.. .+..++ .+....++-||++|+|||+.+
T Consensus 22 ~gr~~~~~~l~~-~l~~~~~~~~~~~vll~G~~G~GKT~l~ 61 (387)
T 2v1u_A 22 PHREAELRRLAE-VLAPALRGEKPSNALLYGLTGTGKTAVA 61 (387)
T ss_dssp TTCHHHHHHHHH-TTGGGTSSCCCCCEEECBCTTSSHHHHH
T ss_pred CCHHHHHHHHHH-HHHHHHcCCCCCcEEEECCCCCCHHHHH
Confidence 455666655532 333333 345568999999999999876
No 61
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=83.76 E-value=0.43 Score=47.30 Aligned_cols=27 Identities=26% Similarity=0.369 Sum_probs=20.8
Q ss_pred HHHHhhcCCceEEEeecCCCCCcceee
Q psy7270 81 MLEHAFEGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 81 lv~~~l~G~n~ti~aYGqTgSGKT~Tm 107 (459)
.+.+++.--.+.|+-.|+||||||.+|
T Consensus 114 ~l~~l~~~~~g~i~I~GptGSGKTTlL 140 (356)
T 3jvv_A 114 VFKRVSDVPRGLVLVTGPTGSGKSTTL 140 (356)
T ss_dssp HHHHHHHCSSEEEEEECSTTSCHHHHH
T ss_pred HHHHHHhCCCCEEEEECCCCCCHHHHH
Confidence 344555555568889999999999987
No 62
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=83.64 E-value=0.49 Score=43.22 Aligned_cols=24 Identities=25% Similarity=0.553 Sum_probs=18.5
Q ss_pred HHHHhhcCCceEEEeecCCCCCccee
Q psy7270 81 MLEHAFEGYNVCIFAYGQTGAGKSYT 106 (459)
Q Consensus 81 lv~~~l~G~n~ti~aYGqTgSGKT~T 106 (459)
.+..+++|.| ++..++||||||.+
T Consensus 55 ~i~~~~~~~~--~li~a~TGsGKT~~ 78 (236)
T 2pl3_A 55 TIGLALQGKD--VLGAAKTGSGKTLA 78 (236)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHH
T ss_pred HHHHHhCCCC--EEEEeCCCCcHHHH
Confidence 3455678877 46778999999986
No 63
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=83.16 E-value=8 Score=32.21 Aligned_cols=113 Identities=14% Similarity=0.247 Sum_probs=53.8
Q ss_pred ceecccchHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHhhhhcC---CCCCCCcchhHHHHHHHHHHchHHHHHHHH
Q psy7270 340 AIVNEDANAKLIRELKEEIQRLRDLLKQEGIEVQEASELIMSKMAET---PNAGENVDWDFAQVELLEKQGVDLKQEMQQ 416 (459)
Q Consensus 340 ~~~n~~~~~~~i~~l~~ei~~L~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (459)
|..+.......+..+.+++..|+..+........+........+.+. ......-.......+.....+..-+.+++.
T Consensus 4 PLL~~~~~e~E~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~ 83 (129)
T 2fxo_A 4 PLLKSAEREKEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEA 83 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 44444445566777778888887777543332222221111111100 000000000112222222333344556777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Q psy7270 417 RLRDLEEQYKREKNEADQAFEQ--QRKSSLRRISKQMK 452 (459)
Q Consensus 417 ~~~~~~~~~~~~~~e~~~~~~~--~~~~~~~~~~~~~~ 452 (459)
++.++++.+..+.+....+... .+..+...+++.++
T Consensus 84 ~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~le 121 (129)
T 2fxo_A 84 KVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDID 121 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888777776666655 33334455555443
No 64
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=83.06 E-value=0.36 Score=41.35 Aligned_cols=17 Identities=41% Similarity=0.774 Sum_probs=14.5
Q ss_pred eEEEeecCCCCCcceee
Q psy7270 91 VCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 91 ~ti~aYGqTgSGKT~Tm 107 (459)
..++-||++|+|||+.+
T Consensus 37 ~~~~l~G~~G~GKTtL~ 53 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLL 53 (149)
T ss_dssp SEEEEESSSTTTTCHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 35677999999999987
No 65
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=83.05 E-value=0.52 Score=43.99 Aligned_cols=18 Identities=22% Similarity=0.394 Sum_probs=15.2
Q ss_pred ceEEEeecCCCCCcceee
Q psy7270 90 NVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 90 n~ti~aYGqTgSGKT~Tm 107 (459)
...|+-||++|+|||+.+
T Consensus 44 ~~~vll~G~~GtGKT~la 61 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLA 61 (268)
T ss_dssp CSCCCCBCSSCSSHHHHH
T ss_pred CceEEEECCCCCcHHHHH
Confidence 345899999999999876
No 66
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=82.91 E-value=0.93 Score=41.83 Aligned_cols=19 Identities=21% Similarity=0.303 Sum_probs=16.0
Q ss_pred CceEEEeecCCCCCcceee
Q psy7270 89 YNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 89 ~n~ti~aYGqTgSGKT~Tm 107 (459)
....|+-||++|+|||+..
T Consensus 38 ~~~~vll~G~~GtGKT~la 56 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLA 56 (262)
T ss_dssp CCCEEEEESCTTSSHHHHH
T ss_pred CCceEEEECCCCCCHHHHH
Confidence 3456899999999999876
No 67
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=82.83 E-value=0.56 Score=42.27 Aligned_cols=25 Identities=20% Similarity=0.478 Sum_probs=18.7
Q ss_pred HHHHhhcCCceEEEeecCCCCCcceee
Q psy7270 81 MLEHAFEGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 81 lv~~~l~G~n~ti~aYGqTgSGKT~Tm 107 (459)
.+..+++|.| ++..++||||||.+.
T Consensus 44 ~i~~~~~~~~--~li~~~TGsGKT~~~ 68 (220)
T 1t6n_A 44 CIPQAILGMD--VLCQAKSGMGKTAVF 68 (220)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHhCCCC--EEEECCCCCchhhhh
Confidence 3456677877 566789999999764
No 68
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=82.60 E-value=0.83 Score=42.37 Aligned_cols=18 Identities=22% Similarity=0.403 Sum_probs=15.4
Q ss_pred ceEEEeecCCCCCcceee
Q psy7270 90 NVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 90 n~ti~aYGqTgSGKT~Tm 107 (459)
...|+-||++|+|||+.+
T Consensus 45 ~~~vll~G~~GtGKT~la 62 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLA 62 (257)
T ss_dssp CCEEEEECCTTSCHHHHH
T ss_pred CCeEEEECcCCCCHHHHH
Confidence 446899999999999876
No 69
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=82.54 E-value=0.4 Score=44.98 Aligned_cols=24 Identities=29% Similarity=0.573 Sum_probs=18.6
Q ss_pred HHHHhhcCCceEEEeecCCCCCccee
Q psy7270 81 MLEHAFEGYNVCIFAYGQTGAGKSYT 106 (459)
Q Consensus 81 lv~~~l~G~n~ti~aYGqTgSGKT~T 106 (459)
++..++.|.| ++..++||||||.+
T Consensus 84 ~i~~~~~~~~--~lv~a~TGsGKT~~ 107 (262)
T 3ly5_A 84 SIRPLLEGRD--LLAAAKTGSGKTLA 107 (262)
T ss_dssp HHHHHHHTCC--CEECCCTTSCHHHH
T ss_pred HHHHHhCCCc--EEEEccCCCCchHH
Confidence 4455667876 67889999999976
No 70
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=82.36 E-value=0.59 Score=42.45 Aligned_cols=25 Identities=24% Similarity=0.457 Sum_probs=18.8
Q ss_pred HHHHhhcCCceEEEeecCCCCCcceee
Q psy7270 81 MLEHAFEGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 81 lv~~~l~G~n~ti~aYGqTgSGKT~Tm 107 (459)
.+..+++|.|+ +..++||||||.+.
T Consensus 50 ~i~~~~~~~~~--l~~apTGsGKT~~~ 74 (228)
T 3iuy_A 50 AWPIILQGIDL--IVVAQTGTGKTLSY 74 (228)
T ss_dssp HHHHHHTTCCE--EEECCTTSCHHHHH
T ss_pred HHHHHhCCCCE--EEECCCCChHHHHH
Confidence 34556788775 67789999999763
No 71
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=82.13 E-value=0.58 Score=44.89 Aligned_cols=18 Identities=28% Similarity=0.569 Sum_probs=15.5
Q ss_pred ceEEEeecCCCCCcceee
Q psy7270 90 NVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 90 n~ti~aYGqTgSGKT~Tm 107 (459)
...|+-||++|+|||+.+
T Consensus 49 ~~~vLL~Gp~GtGKT~la 66 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLA 66 (301)
T ss_dssp CSEEEEECSSSSSHHHHH
T ss_pred CceEEEECCCCcCHHHHH
Confidence 456899999999999875
No 72
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=82.10 E-value=0.84 Score=43.41 Aligned_cols=20 Identities=20% Similarity=0.262 Sum_probs=16.3
Q ss_pred CCceEEEeecCCCCCcceee
Q psy7270 88 GYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 88 G~n~ti~aYGqTgSGKT~Tm 107 (459)
.....|+-||++|+|||+..
T Consensus 65 ~~~~~vll~G~~GtGKT~la 84 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVA 84 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHH
T ss_pred CCCceEEEECCCCCCHHHHH
Confidence 33447999999999999875
No 73
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=82.02 E-value=0.29 Score=43.69 Aligned_cols=23 Identities=39% Similarity=0.508 Sum_probs=17.4
Q ss_pred HHhhcCCceEEEeecCCCCCcceee
Q psy7270 83 EHAFEGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 83 ~~~l~G~n~ti~aYGqTgSGKT~Tm 107 (459)
..+++|.+ ++..++||||||.+.
T Consensus 43 ~~~~~~~~--~li~~~tGsGKT~~~ 65 (216)
T 3b6e_A 43 QPALEGKN--IIICLPTGSGKTRVA 65 (216)
T ss_dssp HHHHTTCC--EEEECSCHHHHHHHH
T ss_pred HHHhcCCC--EEEEcCCCCCHHHHH
Confidence 34456765 567899999999875
No 74
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=81.90 E-value=0.62 Score=43.11 Aligned_cols=25 Identities=32% Similarity=0.492 Sum_probs=18.4
Q ss_pred HHHHhhcCCceEEEeecCCCCCcceee
Q psy7270 81 MLEHAFEGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 81 lv~~~l~G~n~ti~aYGqTgSGKT~Tm 107 (459)
.+..+++|.| ++..++||||||.+.
T Consensus 53 ~i~~i~~~~~--~l~~a~TGsGKT~~~ 77 (253)
T 1wrb_A 53 AIPAILEHRD--IMACAQTGSGKTAAF 77 (253)
T ss_dssp HHHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHHhCCCC--EEEECCCCChHHHHH
Confidence 3455677877 466789999999763
No 75
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=81.65 E-value=1.3 Score=43.38 Aligned_cols=39 Identities=15% Similarity=0.228 Sum_probs=27.0
Q ss_pred CCHHHHHHHHHHHHHHHhhcCCc-e--EEEeecCCCCCcceee
Q psy7270 68 ATQAMVYSDIGEEMLEHAFEGYN-V--CIFAYGQTGAGKSYTM 107 (459)
Q Consensus 68 ~sQ~~vy~~~~~plv~~~l~G~n-~--ti~aYGqTgSGKT~Tm 107 (459)
..++...+.+. ..+..++.|.. . .++-||++|+|||+++
T Consensus 20 ~gr~~~~~~l~-~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~ 61 (389)
T 1fnn_A 20 PHREQQLQQLD-ILLGNWLRNPGHHYPRATLLGRPGTGKTVTL 61 (389)
T ss_dssp TTCHHHHHHHH-HHHHHHHHSTTSSCCEEEEECCTTSSHHHHH
T ss_pred CChHHHHHHHH-HHHHHHHcCCCCCCCeEEEECCCCCCHHHHH
Confidence 45566666653 45555555543 4 6899999999999876
No 76
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=81.55 E-value=0.77 Score=43.56 Aligned_cols=29 Identities=14% Similarity=0.170 Sum_probs=23.3
Q ss_pred HHHHHHhhcCC---ceEEEeecCCCCCcceee
Q psy7270 79 EEMLEHAFEGY---NVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 79 ~plv~~~l~G~---n~ti~aYGqTgSGKT~Tm 107 (459)
...+..+++|. --||+-||+.|+|||+..
T Consensus 90 ~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a 121 (267)
T 1u0j_A 90 ASVFLGWATKKFGKRNTIWLFGPATTGKTNIA 121 (267)
T ss_dssp HHHHHHHHTTCSTTCCEEEEECSTTSSHHHHH
T ss_pred HHHHHHHHhCCCCCCcEEEEECCCCCCHHHHH
Confidence 34577888887 348999999999999865
No 77
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=80.96 E-value=0.61 Score=44.79 Aligned_cols=26 Identities=23% Similarity=0.259 Sum_probs=20.0
Q ss_pred HHHHhhcCCceEEEeecCCCCCccee
Q psy7270 81 MLEHAFEGYNVCIFAYGQTGAGKSYT 106 (459)
Q Consensus 81 lv~~~l~G~n~ti~aYGqTgSGKT~T 106 (459)
.+..++.|-+-.+++.++||||||.+
T Consensus 122 ai~~il~~~~~~~l~~a~TGsGKT~a 147 (300)
T 3fmo_B 122 ALPLMLAEPPQNLIAQSQSGTGKTAA 147 (300)
T ss_dssp HHHHHTSSSCCCEEEECCTTSSHHHH
T ss_pred HHHHHHcCCCCeEEEECCCCCCccHH
Confidence 45666787444578899999999976
No 78
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=80.94 E-value=8.2 Score=40.36 Aligned_cols=25 Identities=8% Similarity=0.098 Sum_probs=12.5
Q ss_pred eeccCCCCCCHHHHHHHHHHHHHhh
Q psy7270 310 IAAISPADINYDETLSTLRYADRAK 334 (459)
Q Consensus 310 I~~isp~~~~~~eTlsTL~fa~rak 334 (459)
+||-.+........+..+.....+.
T Consensus 391 ~cc~~~~~~~~~~~~~~l~~~~~~~ 415 (597)
T 3oja_B 391 LCCKESDKPYLDRLLQYIALTSVVE 415 (597)
T ss_dssp EEEECCSSHHHHHHHHHHHHHHHHH
T ss_pred ccccCCCccchhHHHHHhhHHHHhh
Confidence 4555555555555555555444443
No 79
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=80.79 E-value=0.58 Score=47.68 Aligned_cols=17 Identities=35% Similarity=0.649 Sum_probs=15.1
Q ss_pred eEEEeecCCCCCcceee
Q psy7270 91 VCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 91 ~ti~aYGqTgSGKT~Tm 107 (459)
..++-||++|+|||+.+
T Consensus 131 ~~lll~Gp~G~GKTtLa 147 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLL 147 (440)
T ss_dssp CCEEEECSSSSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 46889999999999987
No 80
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=80.72 E-value=1.3 Score=45.29 Aligned_cols=39 Identities=15% Similarity=0.101 Sum_probs=28.2
Q ss_pred CCHHHHHHHHHHHHHHHhhcCCc--eEEEeecCCCCCcceee
Q psy7270 68 ATQAMVYSDIGEEMLEHAFEGYN--VCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 68 ~sQ~~vy~~~~~plv~~~l~G~n--~ti~aYGqTgSGKT~Tm 107 (459)
..|+++.+.+ ..++..+..|.. ..|+-||++|+|||+..
T Consensus 40 iG~~~~~~~l-~~~~~~~~~~~~~~~~iLl~GppGtGKT~la 80 (456)
T 2c9o_A 40 VGQENAREAC-GVIVELIKSKKMAGRAVLLAGPPGTGKTALA 80 (456)
T ss_dssp ESCHHHHHHH-HHHHHHHHTTCCTTCEEEEECCTTSSHHHHH
T ss_pred cCHHHHHHHH-HHHHHHHHhCCCCCCeEEEECCCcCCHHHHH
Confidence 3567776655 456677777754 36888999999999764
No 81
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=80.69 E-value=0.73 Score=42.02 Aligned_cols=23 Identities=17% Similarity=0.395 Sum_probs=17.7
Q ss_pred HHHhhcCCceEEEeecCCCCCccee
Q psy7270 82 LEHAFEGYNVCIFAYGQTGAGKSYT 106 (459)
Q Consensus 82 v~~~l~G~n~ti~aYGqTgSGKT~T 106 (459)
+..+++|.| ++..++||||||.+
T Consensus 55 i~~~~~~~~--~l~~a~TGsGKT~~ 77 (230)
T 2oxc_A 55 IPLGRCGLD--LIVQAKSGTGKTCV 77 (230)
T ss_dssp HHHHHTTCC--EEEECCTTSSHHHH
T ss_pred HHHHhCCCC--EEEECCCCCcHHHH
Confidence 445677877 46678999999976
No 82
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=80.47 E-value=0.63 Score=42.82 Aligned_cols=23 Identities=30% Similarity=0.544 Sum_probs=17.3
Q ss_pred HHHhhcCCceEEEeecCCCCCccee
Q psy7270 82 LEHAFEGYNVCIFAYGQTGAGKSYT 106 (459)
Q Consensus 82 v~~~l~G~n~ti~aYGqTgSGKT~T 106 (459)
+..+++|.|. +..++||||||.+
T Consensus 60 i~~~~~g~~~--l~~apTGsGKT~~ 82 (242)
T 3fe2_A 60 WPVALSGLDM--VGVAQTGSGKTLS 82 (242)
T ss_dssp HHHHHHTCCE--EEEECTTSCHHHH
T ss_pred HHHHhCCCCE--EEECCCcCHHHHH
Confidence 3455678764 5667999999987
No 83
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=80.28 E-value=0.77 Score=42.63 Aligned_cols=25 Identities=28% Similarity=0.537 Sum_probs=18.5
Q ss_pred HHHHhhcCCceEEEeecCCCCCcceee
Q psy7270 81 MLEHAFEGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 81 lv~~~l~G~n~ti~aYGqTgSGKT~Tm 107 (459)
.+..+++|.+ ++..++||||||.+.
T Consensus 73 ~i~~i~~~~~--~lv~a~TGsGKT~~~ 97 (249)
T 3ber_A 73 AIPLALQGRD--IIGLAETGSGKTGAF 97 (249)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHhCCCC--EEEEcCCCCCchhHh
Confidence 3455678876 466779999999763
No 84
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=80.10 E-value=0.56 Score=42.84 Aligned_cols=26 Identities=31% Similarity=0.529 Sum_probs=19.5
Q ss_pred HHHhhcCCc--eEEEeecCCCCCcceee
Q psy7270 82 LEHAFEGYN--VCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 82 v~~~l~G~n--~ti~aYGqTgSGKT~Tm 107 (459)
+..++.|.. -+++-||+.|+|||+..
T Consensus 48 l~~~~~~iPkkn~ili~GPPGtGKTt~a 75 (212)
T 1tue_A 48 LKSFLKGTPKKNCLVFCGPANTGKSYFG 75 (212)
T ss_dssp HHHHHHTCTTCSEEEEESCGGGCHHHHH
T ss_pred HHHHHhcCCcccEEEEECCCCCCHHHHH
Confidence 445555643 46999999999999875
No 85
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=80.05 E-value=0.63 Score=42.74 Aligned_cols=26 Identities=31% Similarity=0.488 Sum_probs=18.2
Q ss_pred HHHHHhhcCCceEEEeecCCCCCcceee
Q psy7270 80 EMLEHAFEGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 80 plv~~~l~G~n~ti~aYGqTgSGKT~Tm 107 (459)
.++..+..|- .++..|+||||||..+
T Consensus 68 ~~i~~i~~g~--~~~i~g~TGsGKTt~~ 93 (235)
T 3llm_A 68 EILEAISQNS--VVIIRGATGCGKTTQV 93 (235)
T ss_dssp HHHHHHHHCS--EEEEECCTTSSHHHHH
T ss_pred HHHHHHhcCC--EEEEEeCCCCCcHHhH
Confidence 3445555665 4578899999999754
No 86
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=79.94 E-value=1.1 Score=42.32 Aligned_cols=18 Identities=22% Similarity=0.497 Sum_probs=15.7
Q ss_pred ceEEEeecCCCCCcceee
Q psy7270 90 NVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 90 n~ti~aYGqTgSGKT~Tm 107 (459)
...|+-||++|+|||+.+
T Consensus 54 ~~~vll~Gp~GtGKT~la 71 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLA 71 (297)
T ss_dssp CSEEEEESSSSSCHHHHH
T ss_pred CCeEEEECcCCCCHHHHH
Confidence 467999999999999865
No 87
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=79.85 E-value=0.67 Score=43.73 Aligned_cols=19 Identities=42% Similarity=0.471 Sum_probs=16.1
Q ss_pred CceEEEeecCCCCCcceee
Q psy7270 89 YNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 89 ~n~ti~aYGqTgSGKT~Tm 107 (459)
-...+.-.|+||||||.++
T Consensus 24 ~g~~v~i~Gp~GsGKSTll 42 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTI 42 (261)
T ss_dssp SSEEEEEECSTTCSHHHHH
T ss_pred CCCEEEEECCCCccHHHHH
Confidence 4457788999999999987
No 88
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=79.44 E-value=1.2 Score=43.70 Aligned_cols=39 Identities=15% Similarity=0.236 Sum_probs=26.9
Q ss_pred CCHHHHHHHHHHHHHHHhhcC-CceEEEeecCCCCCcceee
Q psy7270 68 ATQAMVYSDIGEEMLEHAFEG-YNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 68 ~sQ~~vy~~~~~plv~~~l~G-~n~ti~aYGqTgSGKT~Tm 107 (459)
..+++..+.+. ..+..++.| ....|+-||++|+|||+.+
T Consensus 23 ~gr~~~~~~l~-~~l~~~~~~~~~~~vll~G~~G~GKT~la 62 (384)
T 2qby_B 23 PFREDILRDAA-IAIRYFVKNEVKFSNLFLGLTGTGKTFVS 62 (384)
T ss_dssp TTCHHHHHHHH-HHHHHHHTTCCCCEEEEEECTTSSHHHHH
T ss_pred CChHHHHHHHH-HHHHHHHcCCCCCcEEEECCCCCCHHHHH
Confidence 34566666653 345555544 3458999999999999875
No 89
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=79.21 E-value=1 Score=37.97 Aligned_cols=28 Identities=18% Similarity=0.110 Sum_probs=18.7
Q ss_pred HHHHhhcCCceEEEeecCCCCCcceeecc
Q psy7270 81 MLEHAFEGYNVCIFAYGQTGAGKSYTMMG 109 (459)
Q Consensus 81 lv~~~l~G~n~ti~aYGqTgSGKT~Tm~G 109 (459)
.+..+.. .+..|+-||++|+|||+..-.
T Consensus 19 ~~~~~~~-~~~~vll~G~~GtGKt~lA~~ 46 (143)
T 3co5_A 19 EVEAAAK-RTSPVFLTGEAGSPFETVARY 46 (143)
T ss_dssp HHHHHHT-CSSCEEEEEETTCCHHHHHGG
T ss_pred HHHHHhC-CCCcEEEECCCCccHHHHHHH
Confidence 3444433 334578899999999987633
No 90
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=79.16 E-value=0.77 Score=38.77 Aligned_cols=20 Identities=20% Similarity=0.572 Sum_probs=16.1
Q ss_pred CCceEEEeecCCCCCcceee
Q psy7270 88 GYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 88 G~n~ti~aYGqTgSGKT~Tm 107 (459)
..+..|+-||++|+|||+..
T Consensus 22 ~~~~~vll~G~~GtGKt~lA 41 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGA 41 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHH
Confidence 44556899999999998764
No 91
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=79.14 E-value=0.85 Score=45.04 Aligned_cols=25 Identities=32% Similarity=0.616 Sum_probs=20.2
Q ss_pred HHHHHhhcCCceEEEeecCCCCCccee
Q psy7270 80 EMLEHAFEGYNVCIFAYGQTGAGKSYT 106 (459)
Q Consensus 80 plv~~~l~G~n~ti~aYGqTgSGKT~T 106 (459)
..+..++.|.+ ++..++||||||.+
T Consensus 69 ~~i~~~~~~~~--~lv~a~TGsGKT~~ 93 (414)
T 3eiq_A 69 RAILPCIKGYD--VIAQAQSGTGKTAT 93 (414)
T ss_dssp HHHHHHHTTCC--EEECCCSCSSSHHH
T ss_pred HHhHHHhCCCC--EEEECCCCCcccHH
Confidence 34566778888 57889999999987
No 92
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=78.88 E-value=0.77 Score=42.50 Aligned_cols=16 Identities=25% Similarity=0.441 Sum_probs=14.4
Q ss_pred EEEeecCCCCCcceee
Q psy7270 92 CIFAYGQTGAGKSYTM 107 (459)
Q Consensus 92 ti~aYGqTgSGKT~Tm 107 (459)
.|+-||++|||||+.+
T Consensus 51 g~ll~G~~G~GKTtl~ 66 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLA 66 (254)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 3899999999999876
No 93
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=78.70 E-value=0.54 Score=42.47 Aligned_cols=23 Identities=30% Similarity=0.486 Sum_probs=17.4
Q ss_pred HHHhhcCCceEEEeecCCCCCccee
Q psy7270 82 LEHAFEGYNVCIFAYGQTGAGKSYT 106 (459)
Q Consensus 82 v~~~l~G~n~ti~aYGqTgSGKT~T 106 (459)
+..+++|.|+ +..++||||||.+
T Consensus 35 i~~~~~~~~~--lv~a~TGsGKT~~ 57 (219)
T 1q0u_A 35 IPGALRGESM--VGQSQTGTGKTHA 57 (219)
T ss_dssp HHHHHHTCCE--EEECCSSHHHHHH
T ss_pred HHHHhCCCCE--EEECCCCChHHHH
Confidence 4455677764 6778999999986
No 94
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=78.19 E-value=27 Score=28.65 Aligned_cols=29 Identities=34% Similarity=0.453 Sum_probs=23.0
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHhhchh
Q psy7270 343 NEDANAKLIRELKEEIQRLRDLLKQEGIE 371 (459)
Q Consensus 343 n~~~~~~~i~~l~~ei~~L~~~l~~~~~~ 371 (459)
..++.+.+|..|+.||+.|+..++....+
T Consensus 9 ~~d~rD~~Ie~Lkreie~lk~ele~l~~E 37 (120)
T 3i00_A 9 NKDEKDHLIERLYREISGLKAQLENMKTE 37 (120)
T ss_dssp -CCTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677889999999999999998765443
No 95
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=78.11 E-value=1.4 Score=42.60 Aligned_cols=39 Identities=18% Similarity=0.183 Sum_probs=26.7
Q ss_pred CCHHHHHHHHHHHHHHHhh--cCCceEEEeecCCCCCcceee
Q psy7270 68 ATQAMVYSDIGEEMLEHAF--EGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 68 ~sQ~~vy~~~~~plv~~~l--~G~n~ti~aYGqTgSGKT~Tm 107 (459)
..++.+...+ ..++..+. .+....|+-||++|+|||+..
T Consensus 32 iG~~~~~~~l-~~~l~~~~~~~~~~~~vll~G~~GtGKT~la 72 (338)
T 3pfi_A 32 IGQESIKKNL-NVFIAAAKKRNECLDHILFSGPAGLGKTTLA 72 (338)
T ss_dssp CSCHHHHHHH-HHHHHHHHHTTSCCCCEEEECSTTSSHHHHH
T ss_pred CChHHHHHHH-HHHHHHHHhcCCCCCeEEEECcCCCCHHHHH
Confidence 4566676655 34555543 244467899999999999865
No 96
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=77.82 E-value=1.3 Score=42.38 Aligned_cols=38 Identities=21% Similarity=0.233 Sum_probs=24.0
Q ss_pred CHHHHHHHHHHHHHHHhh--cCCceEEEeecCCCCCcceee
Q psy7270 69 TQAMVYSDIGEEMLEHAF--EGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 69 sQ~~vy~~~~~plv~~~l--~G~n~ti~aYGqTgSGKT~Tm 107 (459)
.+..+...+ ..++..+. .+....|+-||++|+|||+..
T Consensus 16 g~~~~~~~l-~~~l~~~~~~~~~~~~vll~G~~GtGKT~la 55 (324)
T 1hqc_A 16 GQERLKQKL-RVYLEAAKARKEPLEHLLLFGPPGLGKTTLA 55 (324)
T ss_dssp SCHHHHHHH-HHHHHHHHHHCSCCCCCEEECCTTCCCHHHH
T ss_pred CHHHHHHHH-HHHHHHHHccCCCCCcEEEECCCCCCHHHHH
Confidence 445555443 33444433 234567888999999999865
No 97
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=77.59 E-value=9.9 Score=43.12 Aligned_cols=20 Identities=35% Similarity=0.604 Sum_probs=18.5
Q ss_pred cCCceEEEeecCCCCCccee
Q psy7270 87 EGYNVCIFAYGQTGAGKSYT 106 (459)
Q Consensus 87 ~G~n~ti~aYGqTgSGKT~T 106 (459)
++.|-||+.-|.+|||||.+
T Consensus 153 ~~~~QsIiisGESGAGKTe~ 172 (1080)
T 2dfs_A 153 DERNQSIIVSGESGAGKTVS 172 (1080)
T ss_dssp HTCCEEEEEECSTTSSHHHH
T ss_pred cCCCcEEEEcCCCCCCccch
Confidence 69999999999999999965
No 98
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=77.55 E-value=0.97 Score=46.06 Aligned_cols=26 Identities=23% Similarity=0.259 Sum_probs=21.2
Q ss_pred HHHHhhcCCceEEEeecCCCCCccee
Q psy7270 81 MLEHAFEGYNVCIFAYGQTGAGKSYT 106 (459)
Q Consensus 81 lv~~~l~G~n~ti~aYGqTgSGKT~T 106 (459)
.+..++.|.+..++..|+||||||.+
T Consensus 122 ai~~il~~~~~~~l~~a~TGsGKT~~ 147 (479)
T 3fmp_B 122 ALPLMLAEPPQNLIAQSQSGTGKTAA 147 (479)
T ss_dssp HHHHHTSBSCCEEEEECCSSSSHHHH
T ss_pred HHHHHHcCCCCcEEEEcCCCCchhHH
Confidence 45666778667789999999999976
No 99
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=77.36 E-value=1.1 Score=43.63 Aligned_cols=35 Identities=29% Similarity=0.382 Sum_probs=22.1
Q ss_pred CHHHHHHHHHHHHHHHhhcCCceEEEeecCCCCCcceee
Q psy7270 69 TQAMVYSDIGEEMLEHAFEGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 69 sQ~~vy~~~~~plv~~~l~G~n~ti~aYGqTgSGKT~Tm 107 (459)
.|+.+.+. +-..+-.|--..++-||+.|+|||+++
T Consensus 29 g~~~~~~~----L~~~i~~g~~~~~ll~Gp~G~GKTtla 63 (340)
T 1sxj_C 29 GQNEVITT----VRKFVDEGKLPHLLFYGPPGTGKTSTI 63 (340)
T ss_dssp SCHHHHHH----HHHHHHTTCCCCEEEECSSSSSHHHHH
T ss_pred CcHHHHHH----HHHHHhcCCCceEEEECCCCCCHHHHH
Confidence 35555543 333334553323788999999999876
No 100
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=77.18 E-value=1.5 Score=43.12 Aligned_cols=20 Identities=30% Similarity=0.496 Sum_probs=16.8
Q ss_pred CCceEEEeecCCCCCcceee
Q psy7270 88 GYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 88 G~n~ti~aYGqTgSGKT~Tm 107 (459)
+....|+-||++|+|||+.+
T Consensus 115 ~~~~~vLl~GppGtGKT~la 134 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIG 134 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHH
T ss_pred CCCceEEEECCCCCCHHHHH
Confidence 44567999999999999876
No 101
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=76.76 E-value=1.2 Score=39.68 Aligned_cols=17 Identities=24% Similarity=0.331 Sum_probs=14.9
Q ss_pred eEEEeecCCCCCcceee
Q psy7270 91 VCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 91 ~ti~aYGqTgSGKT~Tm 107 (459)
..++-||++|+|||+.+
T Consensus 46 ~~~ll~G~~G~GKT~l~ 62 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIA 62 (250)
T ss_dssp SEEEEECSTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 47899999999999875
No 102
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=76.40 E-value=2.4 Score=40.38 Aligned_cols=32 Identities=25% Similarity=0.332 Sum_probs=22.9
Q ss_pred HHHHHHHHHhhcCC-----ceEEEeecCCCCCcceee
Q psy7270 76 DIGEEMLEHAFEGY-----NVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 76 ~~~~plv~~~l~G~-----n~ti~aYGqTgSGKT~Tm 107 (459)
.+...++..++.|+ ...|+..|++|||||+..
T Consensus 14 ~~~~~~~~~~l~~~~~~~~~~livl~G~sGsGKSTla 50 (287)
T 1gvn_B 14 NRLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLR 50 (287)
T ss_dssp HHHHHHHHHHHTTCCCCSSCEEEEEECCTTSCTHHHH
T ss_pred HHHHHHHHHHhccccCCCCCeEEEEECCCCCCHHHHH
Confidence 34456666766653 356889999999998753
No 103
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=76.36 E-value=1.1 Score=42.41 Aligned_cols=18 Identities=33% Similarity=0.429 Sum_probs=15.4
Q ss_pred ceEEEeecCCCCCcceee
Q psy7270 90 NVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 90 n~ti~aYGqTgSGKT~Tm 107 (459)
...|+-||++|+|||+..
T Consensus 50 ~~~vll~G~~GtGKT~la 67 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIA 67 (310)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 456889999999999876
No 104
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=76.26 E-value=1.1 Score=44.19 Aligned_cols=26 Identities=23% Similarity=0.259 Sum_probs=20.3
Q ss_pred HHHHhhcCCceEEEeecCCCCCccee
Q psy7270 81 MLEHAFEGYNVCIFAYGQTGAGKSYT 106 (459)
Q Consensus 81 lv~~~l~G~n~ti~aYGqTgSGKT~T 106 (459)
.+..++.|.+..++..++||||||.+
T Consensus 55 ~i~~~~~~~~~~~lv~apTGsGKT~~ 80 (412)
T 3fht_A 55 ALPLMLAEPPQNLIAQSQSGTGKTAA 80 (412)
T ss_dssp HHHHHHSSSCCCEEEECCTTSCHHHH
T ss_pred HHHHHhcCCCCeEEEECCCCchHHHH
Confidence 45666777555678889999999987
No 105
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=75.98 E-value=1.1 Score=44.41 Aligned_cols=25 Identities=28% Similarity=0.570 Sum_probs=19.3
Q ss_pred HHHHhhcCCceEEEeecCCCCCcceee
Q psy7270 81 MLEHAFEGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 81 lv~~~l~G~n~ti~aYGqTgSGKT~Tm 107 (459)
.+..+++|.| ++..++||||||.+.
T Consensus 67 ai~~i~~~~~--~lv~a~TGsGKT~~~ 91 (410)
T 2j0s_A 67 AIKQIIKGRD--VIAQSQSGTGKTATF 91 (410)
T ss_dssp HHHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHHhCCCC--EEEECCCCCCchHHH
Confidence 4556778877 577789999999753
No 106
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=75.82 E-value=1.1 Score=42.68 Aligned_cols=38 Identities=21% Similarity=0.274 Sum_probs=24.7
Q ss_pred CHHHHHHHHHHHHHHHhhcCC------ceEEEeecCCCCCcceee
Q psy7270 69 TQAMVYSDIGEEMLEHAFEGY------NVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 69 sQ~~vy~~~~~plv~~~l~G~------n~ti~aYGqTgSGKT~Tm 107 (459)
.|..+.+.+... +.....|. ...++-||++|+|||++.
T Consensus 21 G~~~~~~~l~~~-i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la 64 (311)
T 4fcw_A 21 GQDEAIRAVADA-IRRARAGLKDPNRPIGSFLFLGPTGVGKTELA 64 (311)
T ss_dssp SCHHHHHHHHHH-HHHHHHTCSCTTSCSEEEEEESCSSSSHHHHH
T ss_pred CHHHHHHHHHHH-HHHHhcCCCCCCCCceEEEEECCCCcCHHHHH
Confidence 566666655433 33333332 367999999999999875
No 107
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=75.60 E-value=1 Score=41.51 Aligned_cols=24 Identities=25% Similarity=0.138 Sum_probs=17.8
Q ss_pred HHHhhcCCceEEEeecCCCCCcceee
Q psy7270 82 LEHAFEGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 82 v~~~l~G~n~ti~aYGqTgSGKT~Tm 107 (459)
+..++++.+ ++.+|+||+|||+..
T Consensus 102 i~~~~~~~~--~ll~~~tG~GKT~~a 125 (237)
T 2fz4_A 102 LERWLVDKR--GCIVLPTGSGKTHVA 125 (237)
T ss_dssp HHHHTTTSE--EEEEESSSTTHHHHH
T ss_pred HHHHHhCCC--EEEEeCCCCCHHHHH
Confidence 344566655 667789999999875
No 108
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=75.58 E-value=13 Score=28.70 Aligned_cols=31 Identities=6% Similarity=0.237 Sum_probs=19.3
Q ss_pred ccceecccchHHHHHHHHHHHHHHHHHHHhh
Q psy7270 338 CKAIVNEDANAKLIRELKEEIQRLRDLLKQE 368 (459)
Q Consensus 338 n~~~~n~~~~~~~i~~l~~ei~~L~~~l~~~ 368 (459)
-+|..+.......+..+..++..|+..+...
T Consensus 3 VKPLL~~~~~eeEm~~~eeel~~lke~l~k~ 33 (89)
T 3bas_A 3 HMPLLSIARQEEEMKEQLKQMDKMKEDLAKT 33 (89)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 3577777767778888999999998888543
No 109
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=75.54 E-value=0.97 Score=46.15 Aligned_cols=39 Identities=18% Similarity=0.272 Sum_probs=26.4
Q ss_pred CCHHHHHHHHHHHHHHHhhcCCceEEEeecCCCCCcceee
Q psy7270 68 ATQAMVYSDIGEEMLEHAFEGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 68 ~sQ~~vy~~~~~plv~~~l~G~n~ti~aYGqTgSGKT~Tm 107 (459)
..|+.+... +.++...+-.|.-..|+-||++|+|||+..
T Consensus 29 vGq~~~~~~-~~~L~~~i~~~~~~~vLL~GppGtGKTtlA 67 (447)
T 3pvs_A 29 IGQQHLLAA-GKPLPRAIEAGHLHSMILWGPPGTGKTTLA 67 (447)
T ss_dssp CSCHHHHST-TSHHHHHHHHTCCCEEEEECSTTSSHHHHH
T ss_pred CCcHHHHhc-hHHHHHHHHcCCCcEEEEECCCCCcHHHHH
Confidence 466666632 133444444565578999999999999865
No 110
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=75.27 E-value=1.3 Score=46.09 Aligned_cols=20 Identities=25% Similarity=0.463 Sum_probs=16.2
Q ss_pred hcCCceEEEeecCCCCCcceee
Q psy7270 86 FEGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 86 l~G~n~ti~aYGqTgSGKT~Tm 107 (459)
-.|.+ |+-.|+||||||.||
T Consensus 258 ~~g~~--i~I~GptGSGKTTlL 277 (511)
T 2oap_1 258 EHKFS--AIVVGETASGKTTTL 277 (511)
T ss_dssp HTTCC--EEEEESTTSSHHHHH
T ss_pred hCCCE--EEEECCCCCCHHHHH
Confidence 35766 567899999999986
No 111
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=75.24 E-value=1.4 Score=41.97 Aligned_cols=36 Identities=17% Similarity=0.215 Sum_probs=23.8
Q ss_pred CCHHHHHHHHHHHHHHHhhcCCceEEEeecCCCCCcceee
Q psy7270 68 ATQAMVYSDIGEEMLEHAFEGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 68 ~sQ~~vy~~~~~plv~~~l~G~n~ti~aYGqTgSGKT~Tm 107 (459)
..|+++.+.+. .+ +-.|....++-||++|+|||++.
T Consensus 28 ~g~~~~~~~l~-~~---l~~~~~~~~ll~G~~G~GKT~la 63 (327)
T 1iqp_A 28 VGQEHIVKRLK-HY---VKTGSMPHLLFAGPPGVGKTTAA 63 (327)
T ss_dssp CSCHHHHHHHH-HH---HHHTCCCEEEEESCTTSSHHHHH
T ss_pred hCCHHHHHHHH-HH---HHcCCCCeEEEECcCCCCHHHHH
Confidence 45666665442 22 23454445899999999999876
No 112
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=75.04 E-value=1.2 Score=43.39 Aligned_cols=27 Identities=22% Similarity=0.273 Sum_probs=19.7
Q ss_pred HHHHhhcCCceEEEeecCCCCCcceee
Q psy7270 81 MLEHAFEGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 81 lv~~~l~G~n~ti~aYGqTgSGKT~Tm 107 (459)
.+..++.|-+..++..++||||||.+.
T Consensus 35 ~i~~~~~~~~~~~lv~a~TGsGKT~~~ 61 (395)
T 3pey_A 35 ALPLLLHNPPRNMIAQSQSGTGKTAAF 61 (395)
T ss_dssp HHHHHHCSSCCCEEEECCTTSCHHHHH
T ss_pred HHHHHHcCCCCeEEEECCCCCcHHHHH
Confidence 345567774455688899999999753
No 113
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=74.99 E-value=2.5 Score=43.30 Aligned_cols=46 Identities=24% Similarity=0.409 Sum_probs=33.3
Q ss_pred ceEEEeecCCCCCcceee--------------ccCCCCCCCCChHHHHHHHHHHHHhhcc
Q psy7270 90 NVCIFAYGQTGAGKSYTM--------------MGRQEVEGEEGIIPMICQDLFKRIKDTT 135 (459)
Q Consensus 90 n~ti~aYGqTgSGKT~Tm--------------~G~~~~~~~~Giipr~~~~lF~~i~~~~ 135 (459)
.-.|+-||++|+|||+.. -|+.-.....|--.+.+..+|.......
T Consensus 243 prGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~sk~vGesek~ir~lF~~Ar~~a 302 (467)
T 4b4t_H 243 PKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRELFEMARTKK 302 (467)
T ss_dssp CSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCCCSSSHHHHHHHHHHHHHHHTC
T ss_pred CCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhcccCCHHHHHHHHHHHHHHhcC
Confidence 357999999999999643 2332223357888899999999877543
No 114
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=74.28 E-value=1.1 Score=43.43 Aligned_cols=27 Identities=22% Similarity=0.352 Sum_probs=19.2
Q ss_pred HHHHhhcCCceEEEeecCCCCCcceee
Q psy7270 81 MLEHAFEGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 81 lv~~~l~G~n~ti~aYGqTgSGKT~Tm 107 (459)
+...+..|....++-||++|+|||+++
T Consensus 49 l~~~l~~~~~~~~ll~G~~G~GKT~la 75 (353)
T 1sxj_D 49 LKKTLKSANLPHMLFYGPPGTGKTSTI 75 (353)
T ss_dssp HHHHTTCTTCCCEEEECSTTSSHHHHH
T ss_pred HHHHHhcCCCCEEEEECCCCCCHHHHH
Confidence 344445563334889999999999875
No 115
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=74.26 E-value=1.4 Score=46.19 Aligned_cols=27 Identities=19% Similarity=0.388 Sum_probs=18.6
Q ss_pred HHHHhhcCCceEEEeecCCCCCcceeec
Q psy7270 81 MLEHAFEGYNVCIFAYGQTGAGKSYTMM 108 (459)
Q Consensus 81 lv~~~l~G~n~ti~aYGqTgSGKT~Tm~ 108 (459)
+++.+.+|.+.++++ ++||||||.+++
T Consensus 190 ~~~~~~~~~~~~ll~-~~TGsGKT~~~~ 216 (590)
T 3h1t_A 190 AVQSVLQGKKRSLIT-MATGTGKTVVAF 216 (590)
T ss_dssp HHHHHHTTCSEEEEE-ECTTSCHHHHHH
T ss_pred HHHHHhcCCCceEEE-ecCCCChHHHHH
Confidence 344444576655554 899999999863
No 116
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=74.17 E-value=2 Score=41.09 Aligned_cols=36 Identities=17% Similarity=0.162 Sum_probs=22.8
Q ss_pred CCHHHHHHHHHHHHHHHhhcCC-ceEEEeecCCCCCcceee
Q psy7270 68 ATQAMVYSDIGEEMLEHAFEGY-NVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 68 ~sQ~~vy~~~~~plv~~~l~G~-n~ti~aYGqTgSGKT~Tm 107 (459)
..|+++...+ ...+ -.|. ...++-||++|+|||+++
T Consensus 29 vg~~~~~~~l-~~~l---~~~~~~~~~L~~G~~G~GKT~la 65 (324)
T 3u61_B 29 ILPAFDKETF-KSIT---SKGKIPHIILHSPSPGTGKTTVA 65 (324)
T ss_dssp CCCHHHHHHH-HHHH---HTTCCCSEEEECSSTTSSHHHHH
T ss_pred hCcHHHHHHH-HHHH---HcCCCCeEEEeeCcCCCCHHHHH
Confidence 4556665333 2222 2343 356788999999999976
No 117
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=74.17 E-value=1.3 Score=42.18 Aligned_cols=24 Identities=25% Similarity=0.486 Sum_probs=17.6
Q ss_pred HHHhhcCCceEEEeecCCCCCcceee
Q psy7270 82 LEHAFEGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 82 v~~~l~G~n~ti~aYGqTgSGKT~Tm 107 (459)
+..+++|.+ ++..++||||||.+.
T Consensus 25 i~~i~~~~~--~lv~~~TGsGKT~~~ 48 (337)
T 2z0m_A 25 IPLMLQGKN--VVVRAKTGSGKTAAY 48 (337)
T ss_dssp HHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHhcCCC--EEEEcCCCCcHHHHH
Confidence 345567776 566789999999764
No 118
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=74.07 E-value=1.3 Score=43.63 Aligned_cols=24 Identities=29% Similarity=0.531 Sum_probs=18.0
Q ss_pred HHHhhcCCceEEEeecCCCCCcceee
Q psy7270 82 LEHAFEGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 82 v~~~l~G~n~ti~aYGqTgSGKT~Tm 107 (459)
+..++.|.+ ++..++||||||.+.
T Consensus 52 i~~i~~~~~--~li~a~TGsGKT~~~ 75 (400)
T 1s2m_A 52 IPVAITGRD--ILARAKNGTGKTAAF 75 (400)
T ss_dssp HHHHHHTCC--EEEECCTTSCHHHHH
T ss_pred HHHHhcCCC--EEEECCCCcHHHHHH
Confidence 455567776 577889999999753
No 119
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=74.01 E-value=2.4 Score=42.09 Aligned_cols=18 Identities=22% Similarity=0.488 Sum_probs=15.5
Q ss_pred ceEEEeecCCCCCcceee
Q psy7270 90 NVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 90 n~ti~aYGqTgSGKT~Tm 107 (459)
...|+-||++|+|||+..
T Consensus 148 ~~~vLL~GppGtGKT~la 165 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLA 165 (389)
T ss_dssp CSEEEEESSTTSCHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 357999999999999865
No 120
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=74.00 E-value=0.81 Score=44.60 Aligned_cols=39 Identities=28% Similarity=0.427 Sum_probs=24.1
Q ss_pred CCHHHHHHHHHHHHHHHhh-cCCceEEEeecCCCCCcceee
Q psy7270 68 ATQAMVYSDIGEEMLEHAF-EGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 68 ~sQ~~vy~~~~~plv~~~l-~G~n~ti~aYGqTgSGKT~Tm 107 (459)
..++...+.+. ..+..++ .+....++-||++|+|||+.+
T Consensus 23 ~gr~~e~~~l~-~~l~~~~~~~~~~~vli~G~~G~GKTtl~ 62 (386)
T 2qby_A 23 PHREDQIRKIA-SILAPLYREEKPNNIFIYGLTGTGKTAVV 62 (386)
T ss_dssp TTCHHHHHHHH-HSSGGGGGTCCCCCEEEEECTTSSHHHHH
T ss_pred CChHHHHHHHH-HHHHHHHcCCCCCeEEEECCCCCCHHHHH
Confidence 34455554442 2333333 234567899999999999876
No 121
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=73.89 E-value=0.89 Score=45.21 Aligned_cols=27 Identities=30% Similarity=0.276 Sum_probs=19.8
Q ss_pred HHHHhhcCCceEEEeecCCCCCcceee
Q psy7270 81 MLEHAFEGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 81 lv~~~l~G~n~ti~aYGqTgSGKT~Tm 107 (459)
++..+.-.-...|.-.|+||||||.+|
T Consensus 127 ~l~~l~~~~g~~i~ivG~~GsGKTTll 153 (372)
T 2ewv_A 127 KVLELCHRKMGLILVTGPTGSGKSTTI 153 (372)
T ss_dssp SHHHHTTSSSEEEEEECSSSSSHHHHH
T ss_pred HHHHHhhcCCCEEEEECCCCCCHHHHH
Confidence 344443344567888999999999987
No 122
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=73.62 E-value=1.2 Score=42.99 Aligned_cols=34 Identities=18% Similarity=0.173 Sum_probs=22.4
Q ss_pred CCHHHHHHHHHHHHHHHhhcCCceEEEeecCCCCCcceee
Q psy7270 68 ATQAMVYSDIGEEMLEHAFEGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 68 ~sQ~~vy~~~~~plv~~~l~G~n~ti~aYGqTgSGKT~Tm 107 (459)
..|+++-..+. ..+..|. .|+-||++|+|||+.+
T Consensus 30 ~g~~~~~~~l~----~~l~~~~--~vll~G~pGtGKT~la 63 (331)
T 2r44_A 30 VGQKYMINRLL----IGICTGG--HILLEGVPGLAKTLSV 63 (331)
T ss_dssp CSCHHHHHHHH----HHHHHTC--CEEEESCCCHHHHHHH
T ss_pred eCcHHHHHHHH----HHHHcCC--eEEEECCCCCcHHHHH
Confidence 35566554443 3333443 5788999999999876
No 123
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=73.52 E-value=1.3 Score=41.59 Aligned_cols=16 Identities=25% Similarity=0.441 Sum_probs=14.4
Q ss_pred EEEeecCCCCCcceee
Q psy7270 92 CIFAYGQTGAGKSYTM 107 (459)
Q Consensus 92 ti~aYGqTgSGKT~Tm 107 (459)
.|+-||++|||||+.+
T Consensus 75 gvll~Gp~GtGKTtl~ 90 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLA 90 (278)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCcChHHHHH
Confidence 3899999999999876
No 124
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=72.42 E-value=1.5 Score=43.31 Aligned_cols=24 Identities=29% Similarity=0.403 Sum_probs=18.2
Q ss_pred HHHhhcCCceEEEeecCCCCCcceee
Q psy7270 82 LEHAFEGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 82 v~~~l~G~n~ti~aYGqTgSGKT~Tm 107 (459)
+..+++|.|+ +..++||||||.+.
T Consensus 46 i~~i~~~~~~--lv~a~TGsGKT~~~ 69 (417)
T 2i4i_A 46 IPIIKEKRDL--MACAQTGSGKTAAF 69 (417)
T ss_dssp HHHHHTTCCE--EEECCTTSCHHHHH
T ss_pred HHHHccCCCE--EEEcCCCCHHHHHH
Confidence 4456788774 67789999999753
No 125
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=71.26 E-value=1.6 Score=46.65 Aligned_cols=27 Identities=22% Similarity=0.352 Sum_probs=18.3
Q ss_pred HHHHhhcCCceEEEeecCCCCCcceeec
Q psy7270 81 MLEHAFEGYNVCIFAYGQTGAGKSYTMM 108 (459)
Q Consensus 81 lv~~~l~G~n~ti~aYGqTgSGKT~Tm~ 108 (459)
.|..++..-.. .+-.|+.|||||+|+.
T Consensus 197 AV~~al~~~~~-~lI~GPPGTGKT~ti~ 223 (646)
T 4b3f_X 197 AVLFALSQKEL-AIIHGPPGTGKTTTVV 223 (646)
T ss_dssp HHHHHHHCSSE-EEEECCTTSCHHHHHH
T ss_pred HHHHHhcCCCc-eEEECCCCCCHHHHHH
Confidence 34455543333 4567999999999974
No 126
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=71.23 E-value=1.1 Score=43.37 Aligned_cols=17 Identities=47% Similarity=0.806 Sum_probs=14.9
Q ss_pred eEEEeecCCCCCcceee
Q psy7270 91 VCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 91 ~ti~aYGqTgSGKT~Tm 107 (459)
..|+-||++|+|||+..
T Consensus 52 ~~vLl~GppGtGKT~la 68 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLA 68 (322)
T ss_dssp CEEEEECSSSSCHHHHH
T ss_pred CeEEEECCCCCcHHHHH
Confidence 46899999999999875
No 127
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=71.18 E-value=2.1 Score=41.63 Aligned_cols=16 Identities=25% Similarity=0.412 Sum_probs=13.6
Q ss_pred EEEeecCCCCCcceee
Q psy7270 92 CIFAYGQTGAGKSYTM 107 (459)
Q Consensus 92 ti~aYGqTgSGKT~Tm 107 (459)
.++-||++|+|||+.+
T Consensus 53 ~~ll~Gp~G~GKTTLa 68 (334)
T 1in4_A 53 HVLLAGPPGLGKTTLA 68 (334)
T ss_dssp CEEEESSTTSSHHHHH
T ss_pred eEEEECCCCCcHHHHH
Confidence 4677999999999875
No 128
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=70.82 E-value=1.1 Score=43.41 Aligned_cols=17 Identities=41% Similarity=0.733 Sum_probs=14.9
Q ss_pred eEEEeecCCCCCcceee
Q psy7270 91 VCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 91 ~ti~aYGqTgSGKT~Tm 107 (459)
..|+-||++|+|||+..
T Consensus 46 ~~iLL~GppGtGKT~la 62 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLA 62 (322)
T ss_dssp SEEEEESSSSSCHHHHH
T ss_pred ceEEEECCCCccHHHHH
Confidence 46899999999999875
No 129
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=70.73 E-value=3 Score=40.46 Aligned_cols=36 Identities=22% Similarity=0.261 Sum_probs=23.7
Q ss_pred CCHHHHHHHHHHHHHHHhhcC-CceEEEeecCCCCCcceee
Q psy7270 68 ATQAMVYSDIGEEMLEHAFEG-YNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 68 ~sQ~~vy~~~~~plv~~~l~G-~n~ti~aYGqTgSGKT~Tm 107 (459)
..|+.+.+.+.. .+ -.| ....++-||+.|+|||+++
T Consensus 19 vg~~~~~~~L~~-~l---~~~~~~~~~ll~G~~G~GKT~la 55 (373)
T 1jr3_A 19 VGQEHVLTALAN-GL---SLGRIHHAYLFSGTRGVGKTSIA 55 (373)
T ss_dssp CSCHHHHHHHHH-HH---HHTCCCSEEEEESCTTSSHHHHH
T ss_pred cCcHHHHHHHHH-HH---HhCCCCeEEEEECCCCCCHHHHH
Confidence 456666654432 22 233 3457899999999999875
No 130
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=70.58 E-value=1.3 Score=41.97 Aligned_cols=35 Identities=20% Similarity=0.126 Sum_probs=22.2
Q ss_pred CHHHHHHHHHHHHHHHhhcCCceEEEeecCCCCCcceee
Q psy7270 69 TQAMVYSDIGEEMLEHAFEGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 69 sQ~~vy~~~~~plv~~~l~G~n~ti~aYGqTgSGKT~Tm 107 (459)
.|+.+.+.+ ...+-.|....++-||++|+|||++.
T Consensus 21 g~~~~~~~l----~~~l~~~~~~~~ll~G~~G~GKt~la 55 (319)
T 2chq_A 21 GQDEVIQRL----KGYVERKNIPHLLFSGPPGTGKTATA 55 (319)
T ss_dssp SCHHHHHHH----HTTTTTTCCCCEEEESSSSSSHHHHH
T ss_pred CCHHHHHHH----HHHHhCCCCCeEEEECcCCcCHHHHH
Confidence 455555432 22233454444899999999999875
No 131
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=70.54 E-value=1.3 Score=41.84 Aligned_cols=23 Identities=17% Similarity=0.046 Sum_probs=15.9
Q ss_pred HHhhcCCceEEEeecCCCCCcceee
Q psy7270 83 EHAFEGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 83 ~~~l~G~n~ti~aYGqTgSGKT~Tm 107 (459)
..++.|.++ +..++||||||.+.
T Consensus 123 ~~~l~~~~~--ll~~~tGsGKT~~~ 145 (282)
T 1rif_A 123 FEGLVNRRR--ILNLPTSAGRSLIQ 145 (282)
T ss_dssp HHHHHHSEE--EECCCTTSCHHHHH
T ss_pred HHHHhcCCe--EEEcCCCCCcHHHH
Confidence 334455444 33899999999876
No 132
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=70.24 E-value=1.9 Score=42.88 Aligned_cols=24 Identities=21% Similarity=0.275 Sum_probs=18.3
Q ss_pred HHHHhhcCCceEEEeecCCCCCccee
Q psy7270 81 MLEHAFEGYNVCIFAYGQTGAGKSYT 106 (459)
Q Consensus 81 lv~~~l~G~n~ti~aYGqTgSGKT~T 106 (459)
++..+++|.| ++..++||||||..
T Consensus 29 ~i~~i~~~~~--~lv~apTGsGKT~~ 52 (414)
T 3oiy_A 29 WAKRIVQGKS--FTMVAPTGVGKTTF 52 (414)
T ss_dssp HHHHHTTTCC--EECCSCSSSSHHHH
T ss_pred HHHHHhcCCC--EEEEeCCCCCHHHH
Confidence 3455567876 57889999999984
No 133
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=69.37 E-value=2.3 Score=44.11 Aligned_cols=26 Identities=19% Similarity=0.409 Sum_probs=20.1
Q ss_pred HHHHhhcCCceEEEeecCCCCCccee
Q psy7270 81 MLEHAFEGYNVCIFAYGQTGAGKSYT 106 (459)
Q Consensus 81 lv~~~l~G~n~ti~aYGqTgSGKT~T 106 (459)
++..++.|-+-.+++.++||||||.+
T Consensus 102 ~i~~~l~~~~~~~lv~apTGsGKTl~ 127 (563)
T 3i5x_A 102 TIKPILSSEDHDVIARAKTGTGKTFA 127 (563)
T ss_dssp HHHHHHSSSSEEEEEECCTTSCHHHH
T ss_pred HHHHHhcCCCCeEEEECCCCCCccHH
Confidence 45566666566778999999999986
No 134
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=68.70 E-value=1.9 Score=39.04 Aligned_cols=29 Identities=17% Similarity=0.313 Sum_probs=21.7
Q ss_pred HHHHHHhhcC-C--ceEEEeecCCCCCcceee
Q psy7270 79 EEMLEHAFEG-Y--NVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 79 ~plv~~~l~G-~--n~ti~aYGqTgSGKT~Tm 107 (459)
-|-++.++.| + ...+.-+|++|||||..+
T Consensus 10 ~~~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~ 41 (243)
T 1n0w_A 10 SKELDKLLQGGIETGSITEMFGEFRTGKTQIC 41 (243)
T ss_dssp CHHHHHHTTTSEETTSEEEEECCTTSSHHHHH
T ss_pred ChHHHHhhcCCCcCCeEEEEECCCCCcHHHHH
Confidence 3567778853 3 356788999999999865
No 135
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=68.67 E-value=2 Score=40.59 Aligned_cols=15 Identities=27% Similarity=0.547 Sum_probs=13.7
Q ss_pred EEeecCCCCCcceee
Q psy7270 93 IFAYGQTGAGKSYTM 107 (459)
Q Consensus 93 i~aYGqTgSGKT~Tm 107 (459)
|+-||++|||||+.+
T Consensus 47 vlL~Gp~GtGKTtLa 61 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLA 61 (274)
T ss_dssp EEEESSTTSCHHHHH
T ss_pred EEEECCCCCcHHHHH
Confidence 899999999999865
No 136
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=68.46 E-value=3 Score=41.07 Aligned_cols=25 Identities=24% Similarity=0.440 Sum_probs=19.8
Q ss_pred HHhhcC---CceEEEe--ecCCCCCcceee
Q psy7270 83 EHAFEG---YNVCIFA--YGQTGAGKSYTM 107 (459)
Q Consensus 83 ~~~l~G---~n~ti~a--YGqTgSGKT~Tm 107 (459)
..+..| -...++- ||+.|+|||+.+
T Consensus 40 ~~~~~~~~~~~~~~li~i~G~~G~GKT~L~ 69 (412)
T 1w5s_A 40 NRLLSGAGLSDVNMIYGSIGRVGIGKTTLA 69 (412)
T ss_dssp HHHHTSSCBCCEEEEEECTTCCSSSHHHHH
T ss_pred HHHhcCCCCCCCEEEEeCcCcCCCCHHHHH
Confidence 566666 4567888 999999999875
No 137
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=68.38 E-value=1.9 Score=44.55 Aligned_cols=25 Identities=20% Similarity=0.255 Sum_probs=19.2
Q ss_pred HHHhhcCCceEEEeecCCCCCccee
Q psy7270 82 LEHAFEGYNVCIFAYGQTGAGKSYT 106 (459)
Q Consensus 82 v~~~l~G~n~ti~aYGqTgSGKT~T 106 (459)
+..+++|-+..++..++||||||.+
T Consensus 150 i~~i~~~~~~~~ll~apTGsGKT~~ 174 (508)
T 3fho_A 150 LPLLLSNPPRNMIGQSQSGTGKTAA 174 (508)
T ss_dssp HHHHHCSSCCCEEEECCSSTTSHHH
T ss_pred HHHHHcCCCCCEEEECCCCccHHHH
Confidence 4566777445568889999999986
No 138
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=67.96 E-value=2.2 Score=41.56 Aligned_cols=25 Identities=20% Similarity=0.478 Sum_probs=18.7
Q ss_pred HHHHhhcCCceEEEeecCCCCCcceee
Q psy7270 81 MLEHAFEGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 81 lv~~~l~G~n~ti~aYGqTgSGKT~Tm 107 (459)
.+..+++|.+ ++..++||||||.+.
T Consensus 38 ~i~~~~~~~~--~lv~a~TGsGKT~~~ 62 (391)
T 1xti_A 38 CIPQAILGMD--VLCQAKSGMGKTAVF 62 (391)
T ss_dssp HHHHHTTTCC--EEEECSSCSSHHHHH
T ss_pred HHHHHhcCCc--EEEECCCCCcHHHHH
Confidence 4556677876 566789999999864
No 139
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=67.84 E-value=20 Score=40.68 Aligned_cols=15 Identities=33% Similarity=0.465 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHH
Q psy7270 412 QEMQQRLRDLEEQYK 426 (459)
Q Consensus 412 ~~~~~~~~~~~~~~~ 426 (459)
.++++++..|+++..
T Consensus 1019 ~~L~~kv~~L~~e~~ 1033 (1080)
T 2dfs_A 1019 HETEQLVSELKEQNT 1033 (1080)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444433
No 140
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=67.72 E-value=2.6 Score=43.09 Aligned_cols=37 Identities=14% Similarity=0.087 Sum_probs=24.9
Q ss_pred CCHHHHHHHHHHHHHHHhhcCCceEEEeecCCCCCcceeec
Q psy7270 68 ATQAMVYSDIGEEMLEHAFEGYNVCIFAYGQTGAGKSYTMM 108 (459)
Q Consensus 68 ~sQ~~vy~~~~~plv~~~l~G~n~ti~aYGqTgSGKT~Tm~ 108 (459)
..+++.... ++..+-.+....++-||++|+|||+...
T Consensus 183 iGr~~~i~~----l~~~l~r~~~~~~LL~G~pG~GKT~la~ 219 (468)
T 3pxg_A 183 IGRSKEIQR----VIEVLSRRTKNNPVLIGEPGVGKTAIAE 219 (468)
T ss_dssp CCCHHHHHH----HHHHHHCSSSCEEEEESCTTTTTHHHHH
T ss_pred cCcHHHHHH----HHHHHhccCCCCeEEECCCCCCHHHHHH
Confidence 455555443 3444444556678899999999998763
No 141
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=67.02 E-value=2.7 Score=44.40 Aligned_cols=24 Identities=29% Similarity=0.472 Sum_probs=18.8
Q ss_pred HHHHhhcCCceEEEeecCCCCCccee
Q psy7270 81 MLEHAFEGYNVCIFAYGQTGAGKSYT 106 (459)
Q Consensus 81 lv~~~l~G~n~ti~aYGqTgSGKT~T 106 (459)
+|..++.|.+ +++.++||||||.+
T Consensus 52 ~i~~il~g~d--~lv~~pTGsGKTl~ 75 (591)
T 2v1x_A 52 TINVTMAGKE--VFLVMPTGGGKSLC 75 (591)
T ss_dssp HHHHHHTTCC--EEEECCTTSCTTHH
T ss_pred HHHHHHcCCC--EEEEECCCChHHHH
Confidence 3455677888 57788999999975
No 142
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=66.91 E-value=2.5 Score=39.21 Aligned_cols=30 Identities=30% Similarity=0.362 Sum_probs=19.9
Q ss_pred HHHHHHHHhhcCCc-----eEEEeecCCCCCccee
Q psy7270 77 IGEEMLEHAFEGYN-----VCIFAYGQTGAGKSYT 106 (459)
Q Consensus 77 ~~~plv~~~l~G~n-----~ti~aYGqTgSGKT~T 106 (459)
+...++..++.|+. ..|+-.|++|||||+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKSTl 48 (253)
T 2p5t_B 14 ALARNLRSLTRGKKSSKQPIAILLGGQSGAGKTTI 48 (253)
T ss_dssp HHHHHHHHHHTTCCCCSSCEEEEEESCGGGTTHHH
T ss_pred HHHHHHHHHHccCCcccCCeEEEEECCCCCCHHHH
Confidence 33444445554433 4688999999999874
No 143
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=66.60 E-value=2.2 Score=45.29 Aligned_cols=19 Identities=26% Similarity=0.326 Sum_probs=15.8
Q ss_pred ceEEEeecCCCCCcceeec
Q psy7270 90 NVCIFAYGQTGAGKSYTMM 108 (459)
Q Consensus 90 n~ti~aYGqTgSGKT~Tm~ 108 (459)
+..++..|++|||||+|+.
T Consensus 164 ~~~~vi~G~pGTGKTt~l~ 182 (608)
T 1w36_D 164 RRISVISGGPGTGKTTTVA 182 (608)
T ss_dssp BSEEEEECCTTSTHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHH
Confidence 3567889999999999863
No 144
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=66.38 E-value=2.5 Score=43.38 Aligned_cols=25 Identities=28% Similarity=0.537 Sum_probs=18.7
Q ss_pred HHHHhhcCCceEEEeecCCCCCcceee
Q psy7270 81 MLEHAFEGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 81 lv~~~l~G~n~ti~aYGqTgSGKT~Tm 107 (459)
.+..++.|.| ++..++||||||.+.
T Consensus 15 ~i~~~~~~~~--~l~~~~tGsGKT~~~ 39 (556)
T 4a2p_A 15 LAQPAINGKN--ALICAPTGSGKTFVS 39 (556)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHHcCCC--EEEEcCCCChHHHHH
Confidence 3455577877 466789999999763
No 145
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=66.29 E-value=2.2 Score=41.03 Aligned_cols=25 Identities=24% Similarity=0.327 Sum_probs=17.3
Q ss_pred HHHhhcCCceEEEeecCCCCCcceee
Q psy7270 82 LEHAFEGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 82 v~~~l~G~n~ti~aYGqTgSGKT~Tm 107 (459)
+..+++|.. .++..++||||||.+.
T Consensus 37 i~~~~~~~~-~~l~~~~TGsGKT~~~ 61 (367)
T 1hv8_A 37 IPLFLNDEY-NIVAQARTGSGKTASF 61 (367)
T ss_dssp HHHHHHTCS-EEEEECCSSSSHHHHH
T ss_pred HHHHhCCCC-CEEEECCCCChHHHHH
Confidence 344456632 3567899999999874
No 146
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=65.95 E-value=2.4 Score=40.10 Aligned_cols=36 Identities=17% Similarity=0.224 Sum_probs=22.6
Q ss_pred CCHHHHHHHHHHHHHHHhhcCCceEEEeecCCCCCcceee
Q psy7270 68 ATQAMVYSDIGEEMLEHAFEGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 68 ~sQ~~vy~~~~~plv~~~l~G~n~ti~aYGqTgSGKT~Tm 107 (459)
..|+.+.+.+ ...+-.|.-..++-||++|+|||+..
T Consensus 24 ~g~~~~~~~l----~~~l~~~~~~~~ll~G~~G~GKt~la 59 (323)
T 1sxj_B 24 VGNKETIDRL----QQIAKDGNMPHMIISGMPGIGKTTSV 59 (323)
T ss_dssp CSCTHHHHHH----HHHHHSCCCCCEEEECSTTSSHHHHH
T ss_pred HCCHHHHHHH----HHHHHcCCCCeEEEECcCCCCHHHHH
Confidence 3455555443 22333444333899999999999875
No 147
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=65.65 E-value=2.4 Score=41.76 Aligned_cols=18 Identities=33% Similarity=0.532 Sum_probs=15.4
Q ss_pred ceEEEeecCCCCCcceee
Q psy7270 90 NVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 90 n~ti~aYGqTgSGKT~Tm 107 (459)
...|+-||++|+|||+..
T Consensus 72 ~~~ill~Gp~GtGKT~la 89 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMA 89 (376)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCCEEEECCCCCCHHHHH
Confidence 456899999999999864
No 148
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=65.00 E-value=1.6 Score=42.57 Aligned_cols=24 Identities=33% Similarity=0.513 Sum_probs=18.1
Q ss_pred HHHHhhcCCceEEEeecCCCCCccee
Q psy7270 81 MLEHAFEGYNVCIFAYGQTGAGKSYT 106 (459)
Q Consensus 81 lv~~~l~G~n~ti~aYGqTgSGKT~T 106 (459)
.+..++.|.+ ++..++||||||.+
T Consensus 51 ~i~~i~~~~~--~lv~~~TGsGKT~~ 74 (394)
T 1fuu_A 51 AIMPIIEGHD--VLAQAQSGTGKTGT 74 (394)
T ss_dssp HHHHHHHTCC--EEECCCSSHHHHHH
T ss_pred HHHHHhCCCC--EEEECCCCChHHHH
Confidence 3455667876 46778999999987
No 149
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=64.91 E-value=3.3 Score=41.68 Aligned_cols=24 Identities=29% Similarity=0.444 Sum_probs=18.5
Q ss_pred HHHHhhcCCceEEEeecCCCCCccee
Q psy7270 81 MLEHAFEGYNVCIFAYGQTGAGKSYT 106 (459)
Q Consensus 81 lv~~~l~G~n~ti~aYGqTgSGKT~T 106 (459)
.+..++.|.| +++.++||||||.+
T Consensus 86 ai~~i~~g~d--~i~~a~TGsGKT~a 109 (434)
T 2db3_A 86 SIPVISSGRD--LMACAQTGSGKTAA 109 (434)
T ss_dssp HHHHHHTTCC--EEEECCTTSSHHHH
T ss_pred HHHHHhcCCC--EEEECCCCCCchHH
Confidence 3455678877 57788999999985
No 150
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=64.72 E-value=1.1e+02 Score=30.71 Aligned_cols=9 Identities=33% Similarity=0.619 Sum_probs=4.6
Q ss_pred ceeeeccCC
Q psy7270 225 KISLVDLAG 233 (459)
Q Consensus 225 ~L~~VDLAG 233 (459)
.|..+||.|
T Consensus 238 ~L~~L~l~~ 246 (487)
T 3oja_A 238 NLEHFDLRG 246 (487)
T ss_dssp TCCEEECTT
T ss_pred CCCEEEcCC
Confidence 445555554
No 151
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=64.31 E-value=3.7 Score=41.76 Aligned_cols=35 Identities=14% Similarity=0.108 Sum_probs=24.3
Q ss_pred CCHHHHHHHHHHHHHHHhhcCCceEEEeecCCCCCcceee
Q psy7270 68 ATQAMVYSDIGEEMLEHAFEGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 68 ~sQ~~vy~~~~~plv~~~l~G~n~ti~aYGqTgSGKT~Tm 107 (459)
..|.+++..+. ..+..|- ..++..|..|||||+++
T Consensus 28 ~~Q~~av~~~~----~~i~~~~-~~~li~G~aGTGKT~ll 62 (459)
T 3upu_A 28 EGQKNAFNIVM----KAIKEKK-HHVTINGPAGTGATTLT 62 (459)
T ss_dssp HHHHHHHHHHH----HHHHSSS-CEEEEECCTTSCHHHHH
T ss_pred HHHHHHHHHHH----HHHhcCC-CEEEEEeCCCCCHHHHH
Confidence 36777775543 3333333 47899999999999876
No 152
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=64.30 E-value=4.7 Score=41.40 Aligned_cols=43 Identities=30% Similarity=0.347 Sum_probs=27.4
Q ss_pred eEEEeecCCCCCcceee--------------ccCCCCCCCCChHHHHHHHHHHHHhh
Q psy7270 91 VCIFAYGQTGAGKSYTM--------------MGRQEVEGEEGIIPMICQDLFKRIKD 133 (459)
Q Consensus 91 ~ti~aYGqTgSGKT~Tm--------------~G~~~~~~~~Giipr~~~~lF~~i~~ 133 (459)
..|+-||++|+|||+.+ .|..-.....|.-...+..+|.....
T Consensus 50 ~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~~~g~~~~~~r~lf~~A~~ 106 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELFVGVGAARVRDLFAQAKA 106 (476)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTCCTTHHHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 45999999999999864 12111112345555667778877654
No 153
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=64.28 E-value=2.5 Score=37.80 Aligned_cols=28 Identities=21% Similarity=0.317 Sum_probs=20.1
Q ss_pred HHHHHhhc-CCc--eEEEeecCCCCCcceee
Q psy7270 80 EMLEHAFE-GYN--VCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 80 plv~~~l~-G~n--~ti~aYGqTgSGKT~Tm 107 (459)
+.++.++. |+. ..+.-+|++|||||+.+
T Consensus 10 ~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~ 40 (235)
T 2w0m_A 10 LDFDKLIQGGIPQGFFIALTGEPGTGKTIFS 40 (235)
T ss_dssp HHHHGGGTTSEETTCEEEEECSTTSSHHHHH
T ss_pred hHHHHHhcCCCcCCCEEEEEcCCCCCHHHHH
Confidence 45667775 443 35667899999999875
No 154
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=64.21 E-value=3 Score=42.74 Aligned_cols=23 Identities=30% Similarity=0.420 Sum_probs=17.6
Q ss_pred HHHhhcCCceEEEeecCCCCCccee
Q psy7270 82 LEHAFEGYNVCIFAYGQTGAGKSYT 106 (459)
Q Consensus 82 v~~~l~G~n~ti~aYGqTgSGKT~T 106 (459)
+..++.|.| ++..++||||||.+
T Consensus 13 i~~~~~~~~--~l~~~~tGsGKT~~ 35 (555)
T 3tbk_A 13 ALPAKKGKN--TIICAPTGCGKTFV 35 (555)
T ss_dssp HHHHHTTCC--EEEECCTTSCHHHH
T ss_pred HHHHhCCCC--EEEEeCCCChHHHH
Confidence 445568876 46678999999976
No 155
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=64.02 E-value=3.3 Score=39.72 Aligned_cols=20 Identities=20% Similarity=0.433 Sum_probs=16.7
Q ss_pred CCceEEEeecCCCCCcceee
Q psy7270 88 GYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 88 G~n~ti~aYGqTgSGKT~Tm 107 (459)
..+..|+-||++|+|||+..
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lA 42 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVA 42 (304)
T ss_dssp STTSCEEEESCTTSCHHHHH
T ss_pred CCCCcEEEECCCCchHHHHH
Confidence 45677899999999999864
No 156
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=63.98 E-value=2.8 Score=37.27 Aligned_cols=28 Identities=25% Similarity=0.451 Sum_probs=22.0
Q ss_pred HHHHHhhc-CCc--eEEEeecCCCCCcceee
Q psy7270 80 EMLEHAFE-GYN--VCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 80 plv~~~l~-G~n--~ti~aYGqTgSGKT~Tm 107 (459)
+-++.++. |+. ..+.-+|++|||||..+
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~ 37 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLA 37 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHH
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHH
Confidence 56777886 564 47889999999999765
No 157
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=63.57 E-value=4 Score=36.43 Aligned_cols=29 Identities=24% Similarity=0.180 Sum_probs=18.8
Q ss_pred HHHHHHhhc--CCceEEEeecCCCCCcceee
Q psy7270 79 EEMLEHAFE--GYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 79 ~plv~~~l~--G~n~ti~aYGqTgSGKT~Tm 107 (459)
..+++.+.. +-.-.|.-.|++|||||+.+
T Consensus 9 ~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~ 39 (208)
T 3c8u_A 9 QGVLERLDPRQPGRQLVALSGAPGSGKSTLS 39 (208)
T ss_dssp HHHHHHSCTTCCSCEEEEEECCTTSCTHHHH
T ss_pred HHHHHHHHhcCCCCeEEEEECCCCCCHHHHH
Confidence 344444442 33446667899999999865
No 158
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=63.53 E-value=1.9 Score=37.34 Aligned_cols=17 Identities=29% Similarity=0.425 Sum_probs=14.2
Q ss_pred EEEeecCCCCCcceeec
Q psy7270 92 CIFAYGQTGAGKSYTMM 108 (459)
Q Consensus 92 ti~aYGqTgSGKT~Tm~ 108 (459)
.+.-.|++|||||+.+-
T Consensus 11 i~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAK 27 (171)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 56678999999998873
No 159
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=63.48 E-value=2.8 Score=44.60 Aligned_cols=18 Identities=28% Similarity=0.348 Sum_probs=14.9
Q ss_pred eEEEeecCCCCCcceeec
Q psy7270 91 VCIFAYGQTGAGKSYTMM 108 (459)
Q Consensus 91 ~ti~aYGqTgSGKT~Tm~ 108 (459)
..++..|++|||||+|+.
T Consensus 196 ~~~li~GppGTGKT~~~~ 213 (624)
T 2gk6_A 196 PLSLIQGPPGTGKTVTSA 213 (624)
T ss_dssp SEEEEECCTTSCHHHHHH
T ss_pred CCeEEECCCCCCHHHHHH
Confidence 356789999999999964
No 160
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=63.14 E-value=3.1 Score=37.64 Aligned_cols=26 Identities=27% Similarity=0.474 Sum_probs=18.0
Q ss_pred HHHHHhhcCCceEEEeecCCCCCcceee
Q psy7270 80 EMLEHAFEGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 80 plv~~~l~G~n~ti~aYGqTgSGKT~Tm 107 (459)
++++++-.|--. .-.|++|||||+.+
T Consensus 14 ~~l~~i~~Ge~~--~liG~nGsGKSTLl 39 (208)
T 3b85_A 14 HYVDAIDTNTIV--FGLGPAGSGKTYLA 39 (208)
T ss_dssp HHHHHHHHCSEE--EEECCTTSSTTHHH
T ss_pred HHHHhccCCCEE--EEECCCCCCHHHHH
Confidence 345555555544 44799999999865
No 161
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=63.07 E-value=1.8 Score=42.49 Aligned_cols=17 Identities=47% Similarity=0.806 Sum_probs=14.5
Q ss_pred eEEEeecCCCCCcceee
Q psy7270 91 VCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 91 ~ti~aYGqTgSGKT~Tm 107 (459)
..|+-||++|+|||+..
T Consensus 85 ~~iLL~GppGtGKT~la 101 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLA 101 (355)
T ss_dssp CCEEEECSTTSCHHHHH
T ss_pred ceEEEECCCCCcHHHHH
Confidence 35888999999999865
No 162
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=63.02 E-value=3.7 Score=42.97 Aligned_cols=26 Identities=19% Similarity=0.409 Sum_probs=19.4
Q ss_pred HHHHhhcCCceEEEeecCCCCCccee
Q psy7270 81 MLEHAFEGYNVCIFAYGQTGAGKSYT 106 (459)
Q Consensus 81 lv~~~l~G~n~ti~aYGqTgSGKT~T 106 (459)
++..++.|-+--+++.++||||||.+
T Consensus 51 ~i~~il~~~~~dvlv~apTGsGKTl~ 76 (579)
T 3sqw_A 51 TIKPILSSEDHDVIARAKTGTGKTFA 76 (579)
T ss_dssp HHHHHHCSSSEEEEEECCTTSCHHHH
T ss_pred HHHHHHccCCCeEEEEcCCCcHHHHH
Confidence 44556655555678889999999986
No 163
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=62.87 E-value=2.9 Score=42.31 Aligned_cols=24 Identities=25% Similarity=0.138 Sum_probs=17.6
Q ss_pred HHHhhcCCceEEEeecCCCCCcceee
Q psy7270 82 LEHAFEGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 82 v~~~l~G~n~ti~aYGqTgSGKT~Tm 107 (459)
+..+++|.+ ++..|+||||||.+.
T Consensus 102 i~~i~~~~~--~ll~~~TGsGKT~~~ 125 (472)
T 2fwr_A 102 LERWLVDKR--GCIVLPTGSGKTHVA 125 (472)
T ss_dssp HHHHTTTTE--EEEECCTTSCHHHHH
T ss_pred HHHHHhcCC--EEEEeCCCCCHHHHH
Confidence 344566654 667789999999875
No 164
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=62.79 E-value=4.4 Score=35.93 Aligned_cols=28 Identities=11% Similarity=0.075 Sum_probs=18.9
Q ss_pred HHHHHhhc---CCceEEEeecCCCCCcceee
Q psy7270 80 EMLEHAFE---GYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 80 plv~~~l~---G~n~ti~aYGqTgSGKT~Tm 107 (459)
.+++.+.. .-...|.-.|++|||||+.+
T Consensus 9 ~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~ 39 (201)
T 1rz3_A 9 FLCKTILAIKTAGRLVLGIDGLSRSGKTTLA 39 (201)
T ss_dssp HHHHHHHTSCCSSSEEEEEEECTTSSHHHHH
T ss_pred HHHHHHHHhccCCCeEEEEECCCCCCHHHHH
Confidence 34444443 33356788899999999765
No 165
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=62.38 E-value=57 Score=31.99 Aligned_cols=14 Identities=21% Similarity=0.154 Sum_probs=7.1
Q ss_pred HHHHHHchHHHHHH
Q psy7270 401 ELLEKQGVDLKQEM 414 (459)
Q Consensus 401 ~~~~~~~~~~~~~~ 414 (459)
+.|+++...|+..+
T Consensus 116 ~eLe~~i~~lk~~V 129 (390)
T 1deq_A 116 EDLRSRIEILRRKV 129 (390)
T ss_pred HHHHHHHHHHHHHH
Confidence 45555555555443
No 166
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=62.23 E-value=3.2 Score=44.33 Aligned_cols=25 Identities=36% Similarity=0.465 Sum_probs=18.8
Q ss_pred HHHHhhcCCceEEEeecCCCCCcceee
Q psy7270 81 MLEHAFEGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 81 lv~~~l~G~n~ti~aYGqTgSGKT~Tm 107 (459)
++..+++|.| ++..++||||||.+.
T Consensus 15 ~i~~il~g~~--~ll~~~TGsGKTl~~ 39 (699)
T 4gl2_A 15 VAQPALEGKN--IIICLPTGCGKTRVA 39 (699)
T ss_dssp HHHHHHSSCC--EEECCCTTSCHHHHH
T ss_pred HHHHHHhCCC--EEEEcCCCCcHHHHH
Confidence 3455667877 577899999999764
No 167
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=62.23 E-value=2.2 Score=41.22 Aligned_cols=15 Identities=33% Similarity=0.720 Sum_probs=13.7
Q ss_pred EEeecCCCCCcceee
Q psy7270 93 IFAYGQTGAGKSYTM 107 (459)
Q Consensus 93 i~aYGqTgSGKT~Tm 107 (459)
++-||++|+|||+++
T Consensus 39 ~ll~Gp~G~GKTtl~ 53 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRC 53 (354)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 888999999999876
No 168
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=61.89 E-value=5.1 Score=41.27 Aligned_cols=20 Identities=30% Similarity=0.454 Sum_probs=16.5
Q ss_pred CCceEEEeecCCCCCcceee
Q psy7270 88 GYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 88 G~n~ti~aYGqTgSGKT~Tm 107 (459)
.....|+-||++|+|||+..
T Consensus 236 ~~~~~vLL~GppGtGKT~lA 255 (489)
T 3hu3_A 236 KPPRGILLYGPPGTGKTLIA 255 (489)
T ss_dssp CCCCEEEEECSTTSSHHHHH
T ss_pred CCCCcEEEECcCCCCHHHHH
Confidence 34567999999999999865
No 169
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=61.89 E-value=2 Score=42.14 Aligned_cols=18 Identities=33% Similarity=0.519 Sum_probs=15.1
Q ss_pred ceEEEeecCCCCCcceee
Q psy7270 90 NVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 90 n~ti~aYGqTgSGKT~Tm 107 (459)
...|+-||++|+|||+..
T Consensus 51 ~~~vll~GppGtGKT~la 68 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLA 68 (363)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 356888999999999864
No 170
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=61.73 E-value=2.6 Score=35.66 Aligned_cols=16 Identities=38% Similarity=0.482 Sum_probs=13.2
Q ss_pred EEEeecCCCCCcceee
Q psy7270 92 CIFAYGQTGAGKSYTM 107 (459)
Q Consensus 92 ti~aYGqTgSGKT~Tm 107 (459)
.|+-.|++|||||+..
T Consensus 3 ~I~l~G~~GsGKsT~a 18 (179)
T 3lw7_A 3 VILITGMPGSGKSEFA 18 (179)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4778899999999743
No 171
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=61.35 E-value=3.5 Score=36.88 Aligned_cols=28 Identities=21% Similarity=0.418 Sum_probs=20.9
Q ss_pred HHHHHhhc-CCc--eEEEeecCCCCCcceee
Q psy7270 80 EMLEHAFE-GYN--VCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 80 plv~~~l~-G~n--~ti~aYGqTgSGKT~Tm 107 (459)
+-++.++. |+. ..+.-+|++|||||..+
T Consensus 12 ~~LD~~l~ggi~~G~~~~l~G~nGsGKSTll 42 (231)
T 4a74_A 12 KSLDKLLGGGIETQAITEVFGEFGSGKTQLA 42 (231)
T ss_dssp HHHHHHTTSSEESSEEEEEEESTTSSHHHHH
T ss_pred hhHHhHhcCCCCCCcEEEEECCCCCCHHHHH
Confidence 55677774 543 46788899999999864
No 172
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=61.13 E-value=30 Score=33.47 Aligned_cols=16 Identities=31% Similarity=0.443 Sum_probs=13.7
Q ss_pred EEEeecCCCCCcceee
Q psy7270 92 CIFAYGQTGAGKSYTM 107 (459)
Q Consensus 92 ti~aYGqTgSGKT~Tm 107 (459)
.|...|.+|||||..+
T Consensus 36 ~I~vvG~~~sGKSSLl 51 (360)
T 3t34_A 36 AIAVVGGQSSGKSSVL 51 (360)
T ss_dssp EEEEECBTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 6788899999999754
No 173
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=60.91 E-value=1.8 Score=43.58 Aligned_cols=18 Identities=33% Similarity=0.516 Sum_probs=15.5
Q ss_pred ceEEEeecCCCCCcceee
Q psy7270 90 NVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 90 n~ti~aYGqTgSGKT~Tm 107 (459)
+.-++..|+||||||.++
T Consensus 53 ~~h~~i~G~tGsGKs~~~ 70 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLL 70 (437)
T ss_dssp GGCEEEEECTTSSHHHHH
T ss_pred cceEEEECCCCCCHHHHH
Confidence 456788999999999986
No 174
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=60.85 E-value=4.3 Score=41.97 Aligned_cols=25 Identities=32% Similarity=0.453 Sum_probs=18.2
Q ss_pred HHHHhhcCCceEEEeecCCCCCcceee
Q psy7270 81 MLEHAFEGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 81 lv~~~l~G~n~ti~aYGqTgSGKT~Tm 107 (459)
++..+..|. .|+-||++|+|||+..
T Consensus 34 l~~al~~~~--~VLL~GpPGtGKT~LA 58 (500)
T 3nbx_X 34 CLLAALSGE--SVFLLGPPGIAKSLIA 58 (500)
T ss_dssp HHHHHHHTC--EEEEECCSSSSHHHHH
T ss_pred HHHHHhcCC--eeEeecCchHHHHHHH
Confidence 344445554 5788999999999875
No 175
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=60.37 E-value=2.2 Score=39.21 Aligned_cols=20 Identities=25% Similarity=0.245 Sum_probs=16.5
Q ss_pred ceEEEeecCCCCCcceeecc
Q psy7270 90 NVCIFAYGQTGAGKSYTMMG 109 (459)
Q Consensus 90 n~ti~aYGqTgSGKT~Tm~G 109 (459)
...++-||++|||||..+++
T Consensus 12 G~i~litG~mGsGKTT~ll~ 31 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIR 31 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHH
T ss_pred cEEEEEECCCCCcHHHHHHH
Confidence 35778899999999988755
No 176
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=60.04 E-value=5.7 Score=38.64 Aligned_cols=18 Identities=33% Similarity=0.497 Sum_probs=15.0
Q ss_pred ceEEEeecCCCCCcceee
Q psy7270 90 NVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 90 n~ti~aYGqTgSGKT~Tm 107 (459)
...|.-.|++|||||.|+
T Consensus 129 g~vi~lvG~nGaGKTTll 146 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTI 146 (328)
T ss_dssp SEEEEEECCTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 346777899999999886
No 177
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=59.89 E-value=2.4 Score=43.10 Aligned_cols=17 Identities=41% Similarity=0.733 Sum_probs=14.9
Q ss_pred eEEEeecCCCCCcceee
Q psy7270 91 VCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 91 ~ti~aYGqTgSGKT~Tm 107 (459)
..|+-||++|+|||+..
T Consensus 168 ~~vLL~GppGtGKT~lA 184 (444)
T 2zan_A 168 RGILLFGPPGTGKSYLA 184 (444)
T ss_dssp SEEEEECSTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 56889999999999875
No 178
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=59.72 E-value=2.3 Score=39.30 Aligned_cols=19 Identities=32% Similarity=0.646 Sum_probs=16.5
Q ss_pred eEEEeecCCCCCcceeecc
Q psy7270 91 VCIFAYGQTGAGKSYTMMG 109 (459)
Q Consensus 91 ~ti~aYGqTgSGKT~Tm~G 109 (459)
..||..|..|+||||+|..
T Consensus 7 l~I~~~~kgGvGKTt~a~~ 25 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQ 25 (228)
T ss_dssp EEEEEESSTTSSHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHH
Confidence 5689999999999999854
No 179
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=59.58 E-value=26 Score=44.18 Aligned_cols=15 Identities=33% Similarity=0.727 Sum_probs=11.2
Q ss_pred EEeecCCCCCcceee
Q psy7270 93 IFAYGQTGAGKSYTM 107 (459)
Q Consensus 93 i~aYGqTgSGKT~Tm 107 (459)
|+-+|+||||||-++
T Consensus 1307 vLL~GptGtGKT~li 1321 (3245)
T 3vkg_A 1307 LILCGPPGSGKTMTL 1321 (3245)
T ss_dssp CEEESSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 467788888888543
No 180
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=59.51 E-value=5.1 Score=43.54 Aligned_cols=38 Identities=21% Similarity=0.258 Sum_probs=25.3
Q ss_pred CHHHHHHHHHHHHHHHhhcCCc------eEEEeecCCCCCcceee
Q psy7270 69 TQAMVYSDIGEEMLEHAFEGYN------VCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 69 sQ~~vy~~~~~plv~~~l~G~n------~ti~aYGqTgSGKT~Tm 107 (459)
.|..+...+.. .+.....|.. +.|+-||++|+|||+..
T Consensus 495 Gq~~a~~~l~~-~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA 538 (758)
T 3pxi_A 495 GQDEAVVAVAK-AVRRARAGLKDPKRPIGSFIFLGPTGVGKTELA 538 (758)
T ss_dssp SCHHHHHHHHH-HHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHH
T ss_pred ChHHHHHHHHH-HHHHHHcccCCCCCCceEEEEECCCCCCHHHHH
Confidence 45666655543 3344444543 37999999999999875
No 181
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=58.88 E-value=2.6 Score=37.75 Aligned_cols=17 Identities=29% Similarity=0.442 Sum_probs=13.7
Q ss_pred eEEEeecCCCCCcceee
Q psy7270 91 VCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 91 ~ti~aYGqTgSGKT~Tm 107 (459)
-.|.-.|++|||||.++
T Consensus 9 ~~i~l~GpsGsGKsTl~ 25 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVR 25 (208)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred cEEEEECcCCCCHHHHH
Confidence 35667899999999875
No 182
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=58.54 E-value=3.5 Score=40.91 Aligned_cols=25 Identities=24% Similarity=0.236 Sum_probs=18.2
Q ss_pred HHHHhhcCCceEEEeecCCCCCcceeec
Q psy7270 81 MLEHAFEGYNVCIFAYGQTGAGKSYTMM 108 (459)
Q Consensus 81 lv~~~l~G~n~ti~aYGqTgSGKT~Tm~ 108 (459)
.+..+++| .++..++||+|||.+..
T Consensus 17 ~i~~~~~~---~~ll~~~tG~GKT~~~~ 41 (494)
T 1wp9_A 17 IYAKCKET---NCLIVLPTGLGKTLIAM 41 (494)
T ss_dssp HHHHGGGS---CEEEECCTTSCHHHHHH
T ss_pred HHHHHhhC---CEEEEcCCCCCHHHHHH
Confidence 44566777 34567899999998753
No 183
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=58.53 E-value=5 Score=41.48 Aligned_cols=18 Identities=28% Similarity=0.453 Sum_probs=15.5
Q ss_pred ceEEEeecCCCCCcceee
Q psy7270 90 NVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 90 n~ti~aYGqTgSGKT~Tm 107 (459)
...++-||++|+|||++.
T Consensus 77 ~~~lLL~GppGtGKTtla 94 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAA 94 (516)
T ss_dssp CSEEEEECSTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 357889999999999875
No 184
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=58.36 E-value=6.1 Score=43.60 Aligned_cols=38 Identities=21% Similarity=0.299 Sum_probs=24.2
Q ss_pred CHHHHHHHHHHHHHHHhhcCCc------eEEEeecCCCCCcceee
Q psy7270 69 TQAMVYSDIGEEMLEHAFEGYN------VCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 69 sQ~~vy~~~~~plv~~~l~G~n------~ti~aYGqTgSGKT~Tm 107 (459)
.|..+...+. ..|..+..|.. +.|+-||++|+|||+..
T Consensus 562 G~~~a~~~l~-~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA 605 (854)
T 1qvr_A 562 GQDEAIRAVA-DAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELA 605 (854)
T ss_dssp SCHHHHHHHH-HHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHH
T ss_pred CcHHHHHHHH-HHHHHHhcccCCCCCCceEEEEECCCCCCHHHHH
Confidence 3455554442 33444444432 68999999999999865
No 185
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=58.11 E-value=6.5 Score=42.59 Aligned_cols=38 Identities=24% Similarity=0.279 Sum_probs=24.9
Q ss_pred CHHHHHHHHHHHHHHHhhcCCc------eEEEeecCCCCCcceee
Q psy7270 69 TQAMVYSDIGEEMLEHAFEGYN------VCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 69 sQ~~vy~~~~~plv~~~l~G~n------~ti~aYGqTgSGKT~Tm 107 (459)
.|+++-..+.. .+.....|.. +.++-||++|+|||++.
T Consensus 462 g~~~~~~~l~~-~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la 505 (758)
T 1r6b_X 462 GQDKAIEALTE-AIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVT 505 (758)
T ss_dssp SCHHHHHHHHH-HHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHH
T ss_pred CHHHHHHHHHH-HHHHHhcccCCCCCCceEEEEECCCCCcHHHHH
Confidence 45555544433 3444445543 57999999999999875
No 186
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=57.85 E-value=2.8 Score=42.39 Aligned_cols=27 Identities=22% Similarity=0.464 Sum_probs=21.9
Q ss_pred hhcCCceEEEeecCCCCCccee---eccCC
Q psy7270 85 AFEGYNVCIFAYGQTGAGKSYT---MMGRQ 111 (459)
Q Consensus 85 ~l~G~n~ti~aYGqTgSGKT~T---m~G~~ 111 (459)
++.|++-+|.-.|++|+|||.. ++|..
T Consensus 26 vl~~vsf~I~lvG~sGaGKSTLln~L~g~~ 55 (418)
T 2qag_C 26 VKRGFEFTLMVVGESGLGKSTLINSLFLTD 55 (418)
T ss_dssp CC-CCCEEEEEECCTTSSHHHHHHHHTTCC
T ss_pred EecCCCEEEEEECCCCCcHHHHHHHHhCCC
Confidence 6889999999999999999985 46653
No 187
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=57.73 E-value=4.5 Score=39.78 Aligned_cols=21 Identities=29% Similarity=0.349 Sum_probs=15.2
Q ss_pred hhcCCceEEEeecCCCCCcceee
Q psy7270 85 AFEGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 85 ~l~G~n~ti~aYGqTgSGKT~Tm 107 (459)
+-.|-+. .-.|+||||||+++
T Consensus 172 i~~G~~i--~ivG~sGsGKSTll 192 (361)
T 2gza_A 172 VQLERVI--VVAGETGSGKTTLM 192 (361)
T ss_dssp HHTTCCE--EEEESSSSCHHHHH
T ss_pred HhcCCEE--EEECCCCCCHHHHH
Confidence 3356654 44599999999876
No 188
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=57.71 E-value=2.4 Score=42.05 Aligned_cols=17 Identities=35% Similarity=0.440 Sum_probs=13.7
Q ss_pred eEEEeecCCCCCcceee
Q psy7270 91 VCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 91 ~ti~aYGqTgSGKT~Tm 107 (459)
.-++..|+||||||+++
T Consensus 36 ~~~~i~G~~G~GKs~~~ 52 (392)
T 4ag6_A 36 SNWTILAKPGAGKSFTA 52 (392)
T ss_dssp CCEEEECCTTSSHHHHH
T ss_pred CceEEEcCCCCCHHHHH
Confidence 34566799999999886
No 189
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=57.70 E-value=2.8 Score=36.90 Aligned_cols=16 Identities=25% Similarity=0.382 Sum_probs=12.9
Q ss_pred EEEeecCCCCCcceee
Q psy7270 92 CIFAYGQTGAGKSYTM 107 (459)
Q Consensus 92 ti~aYGqTgSGKT~Tm 107 (459)
.|.-.|++|||||+.+
T Consensus 9 ii~l~Gp~GsGKSTl~ 24 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLV 24 (205)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECcCCCCHHHHH
Confidence 4556799999999875
No 190
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=57.62 E-value=6.5 Score=42.69 Aligned_cols=37 Identities=14% Similarity=0.087 Sum_probs=25.3
Q ss_pred CCHHHHHHHHHHHHHHHhhcCCceEEEeecCCCCCcceeec
Q psy7270 68 ATQAMVYSDIGEEMLEHAFEGYNVCIFAYGQTGAGKSYTMM 108 (459)
Q Consensus 68 ~sQ~~vy~~~~~plv~~~l~G~n~ti~aYGqTgSGKT~Tm~ 108 (459)
..+++.... ++..+..+....++-||++|+|||....
T Consensus 183 iG~~~~i~~----l~~~l~~~~~~~vLL~G~pGtGKT~la~ 219 (758)
T 3pxi_A 183 IGRSKEIQR----VIEVLSRRTKNNPVLIGEPGVGKTAIAE 219 (758)
T ss_dssp CCCHHHHHH----HHHHHHCSSSCEEEEESCTTTTTHHHHH
T ss_pred cCchHHHHH----HHHHHhCCCCCCeEEECCCCCCHHHHHH
Confidence 455555544 3444445666678999999999998753
No 191
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=57.60 E-value=2.8 Score=36.56 Aligned_cols=16 Identities=19% Similarity=0.395 Sum_probs=13.0
Q ss_pred EEEeecCCCCCcceee
Q psy7270 92 CIFAYGQTGAGKSYTM 107 (459)
Q Consensus 92 ti~aYGqTgSGKT~Tm 107 (459)
.|.-.|++|||||..+
T Consensus 7 ~i~i~GpsGsGKSTL~ 22 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIK 22 (180)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4666799999998765
No 192
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=57.49 E-value=8.8 Score=42.07 Aligned_cols=62 Identities=18% Similarity=0.236 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHH-HHhhcCCc----eEEEeecCCCCCcceee--------------ccCCCCCCCCChHHHHHHHHHHHH
Q psy7270 71 AMVYSDIGEEML-EHAFEGYN----VCIFAYGQTGAGKSYTM--------------MGRQEVEGEEGIIPMICQDLFKRI 131 (459)
Q Consensus 71 ~~vy~~~~~plv-~~~l~G~n----~ti~aYGqTgSGKT~Tm--------------~G~~~~~~~~Giipr~~~~lF~~i 131 (459)
+++.+.+.-|+- ..++.++. ..|+-||+.|+|||... -|..-.....|-....+..+|...
T Consensus 214 ~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk~~gese~~lr~lF~~A 293 (806)
T 3cf2_A 214 AQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEA 293 (806)
T ss_dssp HHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSSCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhcccchHHHHHHHHHHHHH
Confidence 445554445554 23555554 47999999999999643 111001123566666777777765
Q ss_pred h
Q psy7270 132 K 132 (459)
Q Consensus 132 ~ 132 (459)
.
T Consensus 294 ~ 294 (806)
T 3cf2_A 294 E 294 (806)
T ss_dssp T
T ss_pred H
Confidence 4
No 193
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=57.47 E-value=5.1 Score=42.69 Aligned_cols=23 Identities=30% Similarity=0.499 Sum_probs=17.5
Q ss_pred HHHhhcCCceEEEeecCCCCCccee
Q psy7270 82 LEHAFEGYNVCIFAYGQTGAGKSYT 106 (459)
Q Consensus 82 v~~~l~G~n~ti~aYGqTgSGKT~T 106 (459)
+..++.|.|+ +..++||||||..
T Consensus 22 i~~~l~g~~~--iv~~~TGsGKTl~ 44 (696)
T 2ykg_A 22 ALPAMKGKNT--IICAPTGCGKTFV 44 (696)
T ss_dssp HHHHHTTCCE--EEECCTTSSHHHH
T ss_pred HHHHHcCCCE--EEEcCCCchHHHH
Confidence 3455678774 6778999999974
No 194
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=57.16 E-value=2.1 Score=37.83 Aligned_cols=18 Identities=17% Similarity=0.252 Sum_probs=15.1
Q ss_pred EEEeecCCCCCcceeecc
Q psy7270 92 CIFAYGQTGAGKSYTMMG 109 (459)
Q Consensus 92 ti~aYGqTgSGKT~Tm~G 109 (459)
.++-||+.|||||+.+.+
T Consensus 5 i~vi~G~~gsGKTT~ll~ 22 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLS 22 (184)
T ss_dssp EEEEEESTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 567899999999998744
No 195
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=56.63 E-value=3.5 Score=35.25 Aligned_cols=16 Identities=38% Similarity=0.453 Sum_probs=13.5
Q ss_pred eEEEeecCCCCCccee
Q psy7270 91 VCIFAYGQTGAGKSYT 106 (459)
Q Consensus 91 ~ti~aYGqTgSGKT~T 106 (459)
..|+-.|.+|||||+.
T Consensus 3 ~~I~i~G~~GsGKST~ 18 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTW 18 (181)
T ss_dssp EEEEEECCTTSSHHHH
T ss_pred eEEEEecCCCCCHHHH
Confidence 3578899999999874
No 196
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=56.61 E-value=2.6 Score=36.92 Aligned_cols=15 Identities=40% Similarity=0.625 Sum_probs=12.4
Q ss_pred EEeecCCCCCcceee
Q psy7270 93 IFAYGQTGAGKSYTM 107 (459)
Q Consensus 93 i~aYGqTgSGKT~Tm 107 (459)
|.-.|++|||||+++
T Consensus 4 i~l~GpsGaGKsTl~ 18 (186)
T 3a00_A 4 IVISGPSGTGKSTLL 18 (186)
T ss_dssp EEEESSSSSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 455799999999876
No 197
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=56.45 E-value=3.6 Score=35.63 Aligned_cols=15 Identities=40% Similarity=0.627 Sum_probs=12.9
Q ss_pred EEEeecCCCCCccee
Q psy7270 92 CIFAYGQTGAGKSYT 106 (459)
Q Consensus 92 ti~aYGqTgSGKT~T 106 (459)
.|+-.|.+|||||+.
T Consensus 7 ~i~l~G~~GsGKst~ 21 (185)
T 3trf_A 7 NIYLIGLMGAGKTSV 21 (185)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 578899999999874
No 198
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=56.37 E-value=99 Score=26.77 Aligned_cols=18 Identities=33% Similarity=0.577 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy7270 413 EMQQRLRDLEEQYKREKN 430 (459)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~ 430 (459)
+++.++..|.+++++.+.
T Consensus 94 elq~ri~~L~~El~~~k~ 111 (168)
T 3o0z_A 94 DLQARITSLQEEVKHLKH 111 (168)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444433
No 199
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=56.32 E-value=3.6 Score=35.32 Aligned_cols=17 Identities=35% Similarity=0.362 Sum_probs=14.2
Q ss_pred eEEEeecCCCCCcceee
Q psy7270 91 VCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 91 ~ti~aYGqTgSGKT~Tm 107 (459)
..|+-.|.+|||||+..
T Consensus 4 ~~i~l~G~~GsGKST~a 20 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIV 20 (178)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 36889999999998764
No 200
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=55.89 E-value=8 Score=39.94 Aligned_cols=16 Identities=25% Similarity=0.441 Sum_probs=14.2
Q ss_pred EEEeecCCCCCcceee
Q psy7270 92 CIFAYGQTGAGKSYTM 107 (459)
Q Consensus 92 ti~aYGqTgSGKT~Tm 107 (459)
.|+-||++|+|||+.+
T Consensus 66 GvLL~GppGtGKTtLa 81 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLA 81 (499)
T ss_dssp EEEEECSSSSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4899999999999865
No 201
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=55.75 E-value=3.3 Score=43.83 Aligned_cols=21 Identities=14% Similarity=0.313 Sum_probs=17.1
Q ss_pred CceEEEeecCCCCCcceeecc
Q psy7270 89 YNVCIFAYGQTGAGKSYTMMG 109 (459)
Q Consensus 89 ~n~ti~aYGqTgSGKT~Tm~G 109 (459)
.++.++..|..|||||+|+.-
T Consensus 21 ~~~~~lV~a~aGsGKT~~l~~ 41 (647)
T 3lfu_A 21 PRSNLLVLAGAGSGKTRVLVH 41 (647)
T ss_dssp CSSCEEEEECTTSCHHHHHHH
T ss_pred CCCCEEEEECCCCCHHHHHHH
Confidence 356678899999999999853
No 202
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=55.64 E-value=5 Score=43.53 Aligned_cols=36 Identities=11% Similarity=0.111 Sum_probs=24.1
Q ss_pred CCHHHHHHHHHHHHHHHhhcCCceEEEeecCCCCCcceee
Q psy7270 68 ATQAMVYSDIGEEMLEHAFEGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 68 ~sQ~~vy~~~~~plv~~~l~G~n~ti~aYGqTgSGKT~Tm 107 (459)
..++..... ++..+.......++-||++|+|||+.+
T Consensus 189 iGr~~~i~~----l~~~l~~~~~~~vlL~G~~GtGKT~la 224 (758)
T 1r6b_X 189 IGREKELER----AIQVLCRRRKNNPLLVGESGVGKTAIA 224 (758)
T ss_dssp CSCHHHHHH----HHHHHTSSSSCEEEEECCTTSSHHHHH
T ss_pred cCCHHHHHH----HHHHHhccCCCCeEEEcCCCCCHHHHH
Confidence 445554433 444444555566788999999999875
No 203
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=55.43 E-value=4 Score=36.92 Aligned_cols=26 Identities=19% Similarity=0.416 Sum_probs=18.7
Q ss_pred HHHhhc-CC--ceEEEeecCCCCCcceee
Q psy7270 82 LEHAFE-GY--NVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 82 v~~~l~-G~--n~ti~aYGqTgSGKT~Tm 107 (459)
++.++. |+ ...++-+|++|||||..+
T Consensus 12 LD~~l~gGl~~G~~~~i~G~~GsGKTtl~ 40 (247)
T 2dr3_A 12 VDEILHGGIPERNVVLLSGGPGTGKTIFS 40 (247)
T ss_dssp HHHHTTTSEETTCEEEEEECTTSSHHHHH
T ss_pred HHHHcCCCCCCCcEEEEECCCCCCHHHHH
Confidence 456654 33 346788999999999874
No 204
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=55.41 E-value=3.1 Score=42.17 Aligned_cols=24 Identities=25% Similarity=0.242 Sum_probs=18.7
Q ss_pred HHHhhcCCceEEEeecCCCCCccee
Q psy7270 82 LEHAFEGYNVCIFAYGQTGAGKSYT 106 (459)
Q Consensus 82 v~~~l~G~n~ti~aYGqTgSGKT~T 106 (459)
+..+++|.+. ++..|+||||||.+
T Consensus 12 i~~~l~~~~~-~lv~a~TGsGKT~~ 35 (451)
T 2jlq_A 12 DEDIFRKKRL-TIMDLHPGAGKTKR 35 (451)
T ss_dssp CGGGGSTTCE-EEECCCTTSSCCTT
T ss_pred HHHHHhcCCe-EEEECCCCCCHhhH
Confidence 4567788765 56779999999986
No 205
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=55.34 E-value=4.4 Score=44.52 Aligned_cols=18 Identities=28% Similarity=0.348 Sum_probs=14.9
Q ss_pred eEEEeecCCCCCcceeec
Q psy7270 91 VCIFAYGQTGAGKSYTMM 108 (459)
Q Consensus 91 ~ti~aYGqTgSGKT~Tm~ 108 (459)
..++..|+.|||||+|+.
T Consensus 376 ~~~lI~GppGTGKT~~i~ 393 (802)
T 2xzl_A 376 PLSLIQGPPGTGKTVTSA 393 (802)
T ss_dssp SEEEEECSTTSSHHHHHH
T ss_pred CCEEEECCCCCCHHHHHH
Confidence 346789999999999973
No 206
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=55.19 E-value=41 Score=35.38 Aligned_cols=20 Identities=30% Similarity=0.287 Sum_probs=15.2
Q ss_pred cCCceEEEeecCCCCCccee
Q psy7270 87 EGYNVCIFAYGQTGAGKSYT 106 (459)
Q Consensus 87 ~G~n~ti~aYGqTgSGKT~T 106 (459)
.+-...|...|.+|+|||+.
T Consensus 35 ~~~~~~VaivG~pnvGKStL 54 (592)
T 1f5n_A 35 TQPMVVVAIVGLYRTGKSYL 54 (592)
T ss_dssp CSBEEEEEEEEBTTSSHHHH
T ss_pred cCCCcEEEEECCCCCCHHHH
Confidence 55556778889999999874
No 207
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=55.18 E-value=7.2 Score=42.01 Aligned_cols=22 Identities=32% Similarity=0.542 Sum_probs=19.8
Q ss_pred hcCCceEEEeecCCCCCcceee
Q psy7270 86 FEGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 86 l~G~n~ti~aYGqTgSGKT~Tm 107 (459)
-++.|.||+.-|.+|||||.+.
T Consensus 90 ~~~~nQsIiisGESGAGKTe~t 111 (697)
T 1lkx_A 90 QSQENQCVIISGESGAGKTEAS 111 (697)
T ss_dssp HHCCCEEEEEECSTTSSHHHHH
T ss_pred hcCCCcEEEecCCCCCCchhhH
Confidence 3699999999999999999874
No 208
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=55.01 E-value=3.6 Score=39.59 Aligned_cols=17 Identities=29% Similarity=0.565 Sum_probs=14.1
Q ss_pred eEEEeecCCCCCcceee
Q psy7270 91 VCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 91 ~ti~aYGqTgSGKT~Tm 107 (459)
..|.-.|++|||||.++
T Consensus 103 ~vi~lvG~nGsGKTTll 119 (304)
T 1rj9_A 103 RVVLVVGVNGVGKTTTI 119 (304)
T ss_dssp SEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCcHHHHH
Confidence 35666799999999987
No 209
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=54.99 E-value=2.9 Score=40.05 Aligned_cols=24 Identities=25% Similarity=0.555 Sum_probs=16.4
Q ss_pred HhhcCCceEEEeecCCCCCcceee
Q psy7270 84 HAFEGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 84 ~~l~G~n~ti~aYGqTgSGKT~Tm 107 (459)
.+++|++-.|...|++|+|||..|
T Consensus 12 ~~l~~~~~~I~lvG~nG~GKSTLl 35 (301)
T 2qnr_A 12 SVKKGFEFTLMVVGESGLGKSTLI 35 (301)
T ss_dssp ------CEEEEEEEETTSSHHHHH
T ss_pred EEEcCCCEEEEEECCCCCCHHHHH
Confidence 367899999999999999999754
No 210
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=54.81 E-value=4.8 Score=44.20 Aligned_cols=19 Identities=26% Similarity=0.310 Sum_probs=15.4
Q ss_pred eEEEeecCCCCCcceeecc
Q psy7270 91 VCIFAYGQTGAGKSYTMMG 109 (459)
Q Consensus 91 ~ti~aYGqTgSGKT~Tm~G 109 (459)
..++..|+.|||||+|+..
T Consensus 372 ~~~lI~GppGTGKT~ti~~ 390 (800)
T 2wjy_A 372 PLSLIQGPPGTGKTVTSAT 390 (800)
T ss_dssp SEEEEECCTTSCHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHH
Confidence 3567899999999999743
No 211
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=54.79 E-value=2.6 Score=37.63 Aligned_cols=18 Identities=22% Similarity=0.222 Sum_probs=15.3
Q ss_pred EEEeecCCCCCcceeecc
Q psy7270 92 CIFAYGQTGAGKSYTMMG 109 (459)
Q Consensus 92 ti~aYGqTgSGKT~Tm~G 109 (459)
.++-||+.|||||..+.+
T Consensus 10 i~v~~G~mgsGKTT~ll~ 27 (191)
T 1xx6_A 10 VEVIVGPMYSGKSEELIR 27 (191)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHH
Confidence 678899999999988754
No 212
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=54.70 E-value=2.9 Score=37.23 Aligned_cols=16 Identities=38% Similarity=0.532 Sum_probs=13.3
Q ss_pred EEEeecCCCCCcceee
Q psy7270 92 CIFAYGQTGAGKSYTM 107 (459)
Q Consensus 92 ti~aYGqTgSGKT~Tm 107 (459)
.+.-.|++|||||..+
T Consensus 6 ~i~lvGpsGaGKSTLl 21 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLL 21 (198)
T ss_dssp CEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4566799999999876
No 213
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=54.49 E-value=3.7 Score=35.44 Aligned_cols=16 Identities=31% Similarity=0.399 Sum_probs=13.5
Q ss_pred EEEeecCCCCCcceee
Q psy7270 92 CIFAYGQTGAGKSYTM 107 (459)
Q Consensus 92 ti~aYGqTgSGKT~Tm 107 (459)
.|+..|.+|||||+..
T Consensus 13 ~i~i~G~~GsGKst~~ 28 (180)
T 3iij_A 13 NILLTGTPGVGKTTLG 28 (180)
T ss_dssp CEEEECSTTSSHHHHH
T ss_pred eEEEEeCCCCCHHHHH
Confidence 4788999999998754
No 214
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=54.40 E-value=3.1 Score=36.51 Aligned_cols=15 Identities=33% Similarity=0.603 Sum_probs=12.6
Q ss_pred EEeecCCCCCcceee
Q psy7270 93 IFAYGQTGAGKSYTM 107 (459)
Q Consensus 93 i~aYGqTgSGKT~Tm 107 (459)
+.-.|++|||||+.+
T Consensus 3 i~l~G~nGsGKTTLl 17 (178)
T 1ye8_A 3 IIITGEPGVGKTTLV 17 (178)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 456899999999876
No 215
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=54.37 E-value=3.5 Score=35.83 Aligned_cols=17 Identities=29% Similarity=0.448 Sum_probs=14.0
Q ss_pred eEEEeecCCCCCcceee
Q psy7270 91 VCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 91 ~ti~aYGqTgSGKT~Tm 107 (459)
..|.-.|++|||||+.+
T Consensus 10 ~~i~l~G~~GsGKSTl~ 26 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIA 26 (191)
T ss_dssp EEEEEEECTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35777899999999865
No 216
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=54.36 E-value=4.7 Score=42.40 Aligned_cols=19 Identities=32% Similarity=0.375 Sum_probs=15.5
Q ss_pred ceEEEeecCCCCCcceeec
Q psy7270 90 NVCIFAYGQTGAGKSYTMM 108 (459)
Q Consensus 90 n~ti~aYGqTgSGKT~Tm~ 108 (459)
+..++-.|+.|||||+|+.
T Consensus 204 ~~~~~I~G~pGTGKTt~i~ 222 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTK 222 (574)
T ss_dssp CSEEEEECCTTSCHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHH
Confidence 3566778999999999873
No 217
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=54.35 E-value=51 Score=32.36 Aligned_cols=44 Identities=7% Similarity=0.252 Sum_probs=20.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Q psy7270 408 VDLKQEMQQRLRDLEEQYKREKNEADQAFEQ--QRKSSLRRISKQM 451 (459)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~--~~~~~~~~~~~~~ 451 (459)
.++..+|++++..|.+.+...-..++.+... .+.++++|++..+
T Consensus 112 ~e~s~eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 112 KQINEDLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556666666655555444433333322 2333444444444
No 218
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=53.80 E-value=1.1e+02 Score=38.92 Aligned_cols=22 Identities=9% Similarity=0.217 Sum_probs=14.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhh
Q psy7270 347 NAKLIRELKEEIQRLRDLLKQE 368 (459)
Q Consensus 347 ~~~~i~~l~~ei~~L~~~l~~~ 368 (459)
....+.+|++++..++.+|++.
T Consensus 1932 t~~~V~~l~~~L~~~~~~L~~k 1953 (3245)
T 3vkg_A 1932 TEAQVKDLQVSLAQKNRELDVK 1953 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777777776666543
No 219
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=53.77 E-value=73 Score=27.10 Aligned_cols=47 Identities=13% Similarity=0.314 Sum_probs=27.5
Q ss_pred hcCCCCCCCcchhHHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHH
Q psy7270 384 AETPNAGENVDWDFAQVELLEKQGVDLKQEMQQRLRDLEEQYKREKN 430 (459)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (459)
...|.....-+.....+..|++++....+++++.+++.+..+.+...
T Consensus 78 dsLPg~~~seeeQ~~ri~~Le~E~~~~~~el~~~v~eae~ll~~v~~ 124 (151)
T 1yke_B 78 DSLPGVDVSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLLRHVDS 124 (151)
T ss_dssp HHCTTSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455444445555666666776666666666666666665554433
No 220
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=53.72 E-value=3.5 Score=39.59 Aligned_cols=17 Identities=29% Similarity=0.593 Sum_probs=14.6
Q ss_pred eEEEeecCCCCCcceee
Q psy7270 91 VCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 91 ~ti~aYGqTgSGKT~Tm 107 (459)
..+.-.|++|||||.|+
T Consensus 101 ~vi~lvG~nGsGKTTll 117 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSL 117 (302)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred cEEEEEcCCCCCHHHHH
Confidence 36778899999999987
No 221
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=53.56 E-value=7.9 Score=42.16 Aligned_cols=21 Identities=29% Similarity=0.506 Sum_probs=19.5
Q ss_pred cCCceEEEeecCCCCCcceee
Q psy7270 87 EGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 87 ~G~n~ti~aYGqTgSGKT~Tm 107 (459)
++.|.||+..|.+|||||.+.
T Consensus 169 ~~~nQsIiisGESGAGKTe~t 189 (770)
T 1w9i_A 169 DRQNQSLLITGESGAGKTENT 189 (770)
T ss_dssp HCCCEEEEEECSTTSSHHHHH
T ss_pred hcCCcEEEEecCCCCcchHHH
Confidence 699999999999999999874
No 222
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}
Probab=53.16 E-value=1e+02 Score=26.17 Aligned_cols=38 Identities=26% Similarity=0.240 Sum_probs=26.9
Q ss_pred ccccceecccchHHHHHHHHHHHHHHHHHHHhhchhHH
Q psy7270 336 IVCKAIVNEDANAKLIRELKEEIQRLRDLLKQEGIEVQ 373 (459)
Q Consensus 336 I~n~~~~n~~~~~~~i~~l~~ei~~L~~~l~~~~~~~~ 373 (459)
|.-+.++-+.-...+.++|...+..+..+|.+......
T Consensus 16 V~VK~iVTe~~Ke~l~~~l~~~i~q~d~elqQLefq~k 53 (150)
T 4dci_A 16 ITVRAVVTPTWKEEAEREISNGIANADQQLAQLEQEGQ 53 (150)
T ss_dssp EEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666667778888899989888888876544433
No 223
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=52.81 E-value=3.6 Score=38.76 Aligned_cols=19 Identities=37% Similarity=0.646 Sum_probs=15.3
Q ss_pred CceEEEeecCCCCCcceee
Q psy7270 89 YNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 89 ~n~ti~aYGqTgSGKT~Tm 107 (459)
|+-+|...|++|||||..|
T Consensus 1 f~f~v~lvG~nGaGKSTLl 19 (270)
T 3sop_A 1 FDFNIMVVGQSGLGKSTLV 19 (270)
T ss_dssp CEEEEEEEESSSSSHHHHH
T ss_pred CeeEEEEECCCCCCHHHHH
Confidence 3557788899999999755
No 224
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=52.54 E-value=5.3 Score=44.63 Aligned_cols=25 Identities=28% Similarity=0.549 Sum_probs=18.8
Q ss_pred HHHHhhcCCceEEEeecCCCCCcceee
Q psy7270 81 MLEHAFEGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 81 lv~~~l~G~n~ti~aYGqTgSGKT~Tm 107 (459)
.+..++.|.|+ +..++||||||.+.
T Consensus 256 ai~~il~g~~~--ll~a~TGsGKTl~~ 280 (936)
T 4a2w_A 256 LAQPAINGKNA--LICAPTGSGKTFVS 280 (936)
T ss_dssp HHHHHHTTCCE--EEECCTTSCHHHHH
T ss_pred HHHHHHcCCCE--EEEeCCCchHHHHH
Confidence 34555788774 66789999999874
No 225
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=52.41 E-value=6 Score=43.19 Aligned_cols=25 Identities=28% Similarity=0.537 Sum_probs=18.8
Q ss_pred HHHHhhcCCceEEEeecCCCCCcceee
Q psy7270 81 MLEHAFEGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 81 lv~~~l~G~n~ti~aYGqTgSGKT~Tm 107 (459)
.+..++.|.| ++..++||||||.+.
T Consensus 256 ~i~~~l~~~~--~ll~~~TGsGKTl~~ 280 (797)
T 4a2q_A 256 LAQPAINGKN--ALICAPTGSGKTFVS 280 (797)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHHhCCC--EEEEeCCCChHHHHH
Confidence 4455678877 467789999999764
No 226
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=52.38 E-value=6.6 Score=42.92 Aligned_cols=36 Identities=17% Similarity=0.212 Sum_probs=24.9
Q ss_pred CCHHHHHHHHHHHHHHHhhcCCceEEEeecCCCCCcceee
Q psy7270 68 ATQAMVYSDIGEEMLEHAFEGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 68 ~sQ~~vy~~~~~plv~~~l~G~n~ti~aYGqTgSGKT~Tm 107 (459)
.-|.+++..+ ..+.-.|....++..|+||||||...
T Consensus 371 ~~Q~~ai~~I----~~~l~~~~~~~~Ll~a~TGSGKTlva 406 (780)
T 1gm5_A 371 NAQKRAHQEI----RNDMISEKPMNRLLQGDVGSGKTVVA 406 (780)
T ss_dssp HHHHHHHHHH----HHHHHSSSCCCCEEECCSSSSHHHHH
T ss_pred HHHHHHHHHH----HhhccccCCCcEEEEcCCCCCHHHHH
Confidence 4566665444 34445666566788999999999764
No 227
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=52.35 E-value=4.8 Score=41.14 Aligned_cols=24 Identities=17% Similarity=0.029 Sum_probs=16.9
Q ss_pred HHhhcCCceEEEeecCCCCCcceeec
Q psy7270 83 EHAFEGYNVCIFAYGQTGAGKSYTMM 108 (459)
Q Consensus 83 ~~~l~G~n~ti~aYGqTgSGKT~Tm~ 108 (459)
..++.|.+ ++..|+||||||.+..
T Consensus 123 ~~~~~~~~--~ll~~~tGsGKT~~~~ 146 (510)
T 2oca_A 123 FEGLVNRR--RILNLPTSAGRSLIQA 146 (510)
T ss_dssp HHHHHHSE--EEEECCSTTTHHHHHH
T ss_pred HHHHhcCC--cEEEeCCCCCHHHHHH
Confidence 33445544 4677999999998853
No 228
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=52.34 E-value=3.4 Score=42.85 Aligned_cols=25 Identities=24% Similarity=0.470 Sum_probs=18.1
Q ss_pred HHHHhhcCCceEEEeecCCCCCcceee
Q psy7270 81 MLEHAFEGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 81 lv~~~l~G~n~ti~aYGqTgSGKT~Tm 107 (459)
++..+++|.++ +..++||||||.+.
T Consensus 33 ~i~~il~g~d~--lv~apTGsGKTl~~ 57 (523)
T 1oyw_A 33 IIDTVLSGRDC--LVVMPTGGGKSLCY 57 (523)
T ss_dssp HHHHHHTTCCE--EEECSCHHHHHHHH
T ss_pred HHHHHHcCCCE--EEECCCCcHHHHHH
Confidence 34556688875 55679999999753
No 229
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=52.33 E-value=8.4 Score=42.10 Aligned_cols=20 Identities=30% Similarity=0.446 Sum_probs=18.6
Q ss_pred cCCceEEEeecCCCCCccee
Q psy7270 87 EGYNVCIFAYGQTGAGKSYT 106 (459)
Q Consensus 87 ~G~n~ti~aYGqTgSGKT~T 106 (459)
++.|.||+.-|.+|||||.+
T Consensus 137 ~~~nQsIiiSGESGAGKTe~ 156 (784)
T 2v26_A 137 LKLSQSIIVSGESGAGKTEN 156 (784)
T ss_dssp HTCCEEEEEECSTTSSHHHH
T ss_pred cCCCcEEEEcCCCCCCceeh
Confidence 69999999999999999965
No 230
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=52.01 E-value=3.9 Score=35.60 Aligned_cols=16 Identities=38% Similarity=0.449 Sum_probs=13.2
Q ss_pred EEEeecCCCCCcceee
Q psy7270 92 CIFAYGQTGAGKSYTM 107 (459)
Q Consensus 92 ti~aYGqTgSGKT~Tm 107 (459)
.|.-.|++|||||+.+
T Consensus 4 ii~l~G~~GaGKSTl~ 19 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTC 19 (189)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 4567899999999865
No 231
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=51.79 E-value=8.9 Score=36.46 Aligned_cols=37 Identities=24% Similarity=0.283 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHhh--cCCceEEEeecCCCCCcceee
Q psy7270 71 AMVYSDIGEEMLEHAF--EGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 71 ~~vy~~~~~plv~~~l--~G~n~ti~aYGqTgSGKT~Tm 107 (459)
.+++..++..+..... .+-...|.-.|++|||||+.+
T Consensus 10 ~~~~~~l~~~i~~~~~~~~~~~~ii~I~G~sGsGKSTla 48 (290)
T 1odf_A 10 DYTIEFLDKYIPEWFETGNKCPLFIFFSGPQGSGKSFTS 48 (290)
T ss_dssp HHHHHHHHHHHHHHHTTTCCSCEEEEEECCTTSSHHHHH
T ss_pred HHHHHHHHHHHHHhhhccCCCCeEEEEECCCCCCHHHHH
Confidence 3455555444433212 234456777899999999865
No 232
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=51.60 E-value=4.7 Score=44.53 Aligned_cols=38 Identities=13% Similarity=0.171 Sum_probs=25.1
Q ss_pred CCHHHHHHHHHHHHHHHhhcCCceEEEeecCCCCCcceeecc
Q psy7270 68 ATQAMVYSDIGEEMLEHAFEGYNVCIFAYGQTGAGKSYTMMG 109 (459)
Q Consensus 68 ~sQ~~vy~~~~~plv~~~l~G~n~ti~aYGqTgSGKT~Tm~G 109 (459)
..+++... .++..+..+....++-||++|+|||+.+.+
T Consensus 173 iGr~~~i~----~l~~~l~~~~~~~vlL~G~pG~GKT~la~~ 210 (854)
T 1qvr_A 173 IGRDEEIR----RVIQILLRRTKNNPVLIGEPGVGKTAIVEG 210 (854)
T ss_dssp CSCHHHHH----HHHHHHHCSSCCCCEEEECTTSCHHHHHHH
T ss_pred CCcHHHHH----HHHHHHhcCCCCceEEEcCCCCCHHHHHHH
Confidence 45554443 344444556555678899999999988733
No 233
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=51.45 E-value=3.7 Score=39.28 Aligned_cols=17 Identities=47% Similarity=0.761 Sum_probs=14.2
Q ss_pred eEEEeecCCCCCcceee
Q psy7270 91 VCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 91 ~ti~aYGqTgSGKT~Tm 107 (459)
..|.-.|++|+|||+|+
T Consensus 106 ~vi~lvG~~GsGKTTl~ 122 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTTL 122 (296)
T ss_dssp SEEEEEESTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 35666799999999987
No 234
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=51.32 E-value=4.2 Score=35.77 Aligned_cols=16 Identities=31% Similarity=0.432 Sum_probs=13.1
Q ss_pred EEEeecCCCCCcceee
Q psy7270 92 CIFAYGQTGAGKSYTM 107 (459)
Q Consensus 92 ti~aYGqTgSGKT~Tm 107 (459)
.|.-.|++|||||+.+
T Consensus 8 ~i~l~G~~GsGKSTl~ 23 (207)
T 2j41_A 8 LIVLSGPSGVGKGTVR 23 (207)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5667899999998764
No 235
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=51.21 E-value=4.1 Score=36.97 Aligned_cols=16 Identities=31% Similarity=0.486 Sum_probs=13.5
Q ss_pred EEEeecCCCCCcceee
Q psy7270 92 CIFAYGQTGAGKSYTM 107 (459)
Q Consensus 92 ti~aYGqTgSGKT~Tm 107 (459)
.+.-.|++|||||..+
T Consensus 32 ~~~l~GpnGsGKSTLl 47 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFA 47 (251)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEEeCCCCCHHHHH
Confidence 5566899999999876
No 236
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=50.88 E-value=1.1e+02 Score=25.42 Aligned_cols=43 Identities=14% Similarity=0.347 Sum_probs=22.6
Q ss_pred cCCCCCCCcchhHHHHHHHHHHchHHHHHHHHHHHHHHHHHHH
Q psy7270 385 ETPNAGENVDWDFAQVELLEKQGVDLKQEMQQRLRDLEEQYKR 427 (459)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (459)
..|.....-+.....+..|++++....+++++.+++.+..+.+
T Consensus 79 sLP~~~~see~Q~~ri~~L~~E~~~~~~el~~~v~e~e~ll~~ 121 (132)
T 1ykh_B 79 SLPGVDVSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLMRH 121 (132)
T ss_dssp HSTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3454444444445555556666555555555555555554443
No 237
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=50.73 E-value=8.6 Score=42.31 Aligned_cols=20 Identities=30% Similarity=0.459 Sum_probs=18.8
Q ss_pred cCCceEEEeecCCCCCccee
Q psy7270 87 EGYNVCIFAYGQTGAGKSYT 106 (459)
Q Consensus 87 ~G~n~ti~aYGqTgSGKT~T 106 (459)
++.|.||+.-|.+|||||.+
T Consensus 166 ~~~nQsIiiSGESGAGKTe~ 185 (837)
T 1kk8_A 166 DRENQSCLITGESGAGKTEN 185 (837)
T ss_dssp HTSEEEEEEECSTTSSHHHH
T ss_pred cCCCcEEEEeCCCCCCchhh
Confidence 69999999999999999976
No 238
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=50.39 E-value=5.2 Score=35.34 Aligned_cols=16 Identities=44% Similarity=0.492 Sum_probs=13.4
Q ss_pred EEEeecCCCCCcceee
Q psy7270 92 CIFAYGQTGAGKSYTM 107 (459)
Q Consensus 92 ti~aYGqTgSGKT~Tm 107 (459)
.|+-.|++|||||+..
T Consensus 27 ~i~l~G~~GsGKsTl~ 42 (199)
T 3vaa_A 27 RIFLTGYMGAGKTTLG 42 (199)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 5788899999998754
No 239
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=50.26 E-value=4.9 Score=36.40 Aligned_cols=16 Identities=19% Similarity=0.339 Sum_probs=9.1
Q ss_pred EEEeecCCCCCcceee
Q psy7270 92 CIFAYGQTGAGKSYTM 107 (459)
Q Consensus 92 ti~aYGqTgSGKT~Tm 107 (459)
.|.-.|++|||||..+
T Consensus 29 ii~l~Gp~GsGKSTl~ 44 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVA 44 (231)
T ss_dssp EEEEECSCC----CHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4556799999999876
No 240
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*
Probab=50.15 E-value=9.5 Score=41.60 Aligned_cols=21 Identities=33% Similarity=0.534 Sum_probs=19.3
Q ss_pred cCCceEEEeecCCCCCcceee
Q psy7270 87 EGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 87 ~G~n~ti~aYGqTgSGKT~Tm 107 (459)
++.|-||+.-|.+|||||.+.
T Consensus 168 ~~~nQsIiiSGESGAGKTe~t 188 (783)
T 4db1_A 168 DRENQSILITGESGAGKTVNT 188 (783)
T ss_dssp HTCCEEEEEECSTTSSHHHHH
T ss_pred hCCCceEEEeCCCCCCCchHH
Confidence 699999999999999999763
No 241
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=50.14 E-value=8.7 Score=43.23 Aligned_cols=20 Identities=30% Similarity=0.541 Sum_probs=18.8
Q ss_pred cCCceEEEeecCCCCCccee
Q psy7270 87 EGYNVCIFAYGQTGAGKSYT 106 (459)
Q Consensus 87 ~G~n~ti~aYGqTgSGKT~T 106 (459)
++.|.||+..|.+|||||.+
T Consensus 169 ~~~~QsIiisGESGAGKTe~ 188 (1010)
T 1g8x_A 169 DRQNQSLLITGESGAGKTEN 188 (1010)
T ss_dssp HTCCEEEEEEESTTSSHHHH
T ss_pred cCCCeEEEEeCCCCCCcchH
Confidence 69999999999999999976
No 242
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=50.09 E-value=5.1 Score=37.18 Aligned_cols=15 Identities=33% Similarity=0.472 Sum_probs=12.5
Q ss_pred EEEeecCCCCCccee
Q psy7270 92 CIFAYGQTGAGKSYT 106 (459)
Q Consensus 92 ti~aYGqTgSGKT~T 106 (459)
.|+-.|++|||||..
T Consensus 3 li~I~G~~GSGKSTl 17 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDM 17 (253)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCcCHHHH
Confidence 467899999999863
No 243
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=50.05 E-value=9.6 Score=41.70 Aligned_cols=20 Identities=35% Similarity=0.604 Sum_probs=18.6
Q ss_pred cCCceEEEeecCCCCCccee
Q psy7270 87 EGYNVCIFAYGQTGAGKSYT 106 (459)
Q Consensus 87 ~G~n~ti~aYGqTgSGKT~T 106 (459)
++.|.||+.-|.+|||||.+
T Consensus 153 ~~~nQsIiisGESGAGKTe~ 172 (795)
T 1w7j_A 153 DERNQSIIVSGESGAGKTVS 172 (795)
T ss_dssp HTCCEEEEEECSTTSSHHHH
T ss_pred cCCCeEEEEeCCCCCCcchH
Confidence 69999999999999999965
No 244
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=50.04 E-value=4.8 Score=43.02 Aligned_cols=21 Identities=14% Similarity=0.218 Sum_probs=17.7
Q ss_pred CceEEEeecCCCCCcceeecc
Q psy7270 89 YNVCIFAYGQTGAGKSYTMMG 109 (459)
Q Consensus 89 ~n~ti~aYGqTgSGKT~Tm~G 109 (459)
.++.++..|..|||||+||..
T Consensus 14 ~~~~~lV~AgaGSGKT~~l~~ 34 (673)
T 1uaa_A 14 VTGPCLVLAGAGSGKTRVITN 34 (673)
T ss_dssp CSSEEEECCCTTSCHHHHHHH
T ss_pred CCCCEEEEeCCCCChHHHHHH
Confidence 366788899999999999863
No 245
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=49.91 E-value=19 Score=36.81 Aligned_cols=15 Identities=20% Similarity=0.337 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHH
Q psy7270 348 AKLIRELKEEIQRLR 362 (459)
Q Consensus 348 ~~~i~~l~~ei~~L~ 362 (459)
...|++|+.+++.+.
T Consensus 63 tkrINELKnqLEdls 77 (562)
T 3ghg_A 63 TNRINKLKNSLFEYQ 77 (562)
T ss_dssp HHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 345667777666663
No 246
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=49.87 E-value=7.9 Score=43.55 Aligned_cols=24 Identities=29% Similarity=0.430 Sum_probs=18.1
Q ss_pred HHHHhhcCCceEEEeecCCCCCccee
Q psy7270 81 MLEHAFEGYNVCIFAYGQTGAGKSYT 106 (459)
Q Consensus 81 lv~~~l~G~n~ti~aYGqTgSGKT~T 106 (459)
.+..+++|.+ ++..|+||||||.+
T Consensus 47 aI~~il~g~~--vlv~apTGsGKTlv 70 (997)
T 4a4z_A 47 AVYHLEQGDS--VFVAAHTSAGKTVV 70 (997)
T ss_dssp HHHHHHTTCE--EEEECCTTSCSHHH
T ss_pred HHHHHHcCCC--EEEEECCCCcHHHH
Confidence 3456677754 68899999999954
No 247
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=49.86 E-value=4.9 Score=34.67 Aligned_cols=16 Identities=19% Similarity=0.412 Sum_probs=13.5
Q ss_pred EEEeecCCCCCcceee
Q psy7270 92 CIFAYGQTGAGKSYTM 107 (459)
Q Consensus 92 ti~aYGqTgSGKT~Tm 107 (459)
.|+-.|.+|||||+..
T Consensus 5 ~I~i~G~~GsGKsT~~ 20 (192)
T 1kht_A 5 VVVVTGVPGVGSTTSS 20 (192)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5788999999998753
No 248
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=49.85 E-value=15 Score=37.24 Aligned_cols=17 Identities=35% Similarity=0.517 Sum_probs=14.5
Q ss_pred eEEEeecCCCCCcceee
Q psy7270 91 VCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 91 ~ti~aYGqTgSGKT~Tm 107 (459)
..|+..|++|||||+|+
T Consensus 98 ~vI~lvG~~GsGKTTt~ 114 (433)
T 3kl4_A 98 FIIMLVGVQGSGKTTTA 114 (433)
T ss_dssp EEEEECCCTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46777799999999986
No 249
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=49.63 E-value=3.7 Score=39.94 Aligned_cols=21 Identities=33% Similarity=0.509 Sum_probs=15.4
Q ss_pred hhcCCceEEEeecCCCCCcceee
Q psy7270 85 AFEGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 85 ~l~G~n~ti~aYGqTgSGKT~Tm 107 (459)
+-.|-+ +.-.|+||||||.++
T Consensus 168 i~~g~~--v~i~G~~GsGKTTll 188 (330)
T 2pt7_A 168 IAIGKN--VIVCGGTGSGKTTYI 188 (330)
T ss_dssp HHHTCC--EEEEESTTSCHHHHH
T ss_pred ccCCCE--EEEECCCCCCHHHHH
Confidence 335654 456699999999876
No 250
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=49.56 E-value=5 Score=34.16 Aligned_cols=16 Identities=50% Similarity=0.578 Sum_probs=13.3
Q ss_pred EEEeecCCCCCcceee
Q psy7270 92 CIFAYGQTGAGKSYTM 107 (459)
Q Consensus 92 ti~aYGqTgSGKT~Tm 107 (459)
.|.-.|++|||||+..
T Consensus 6 ~i~l~G~~GsGKSTl~ 21 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIG 21 (173)
T ss_dssp CEEEECCTTSCHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4778999999999754
No 251
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=49.49 E-value=9.4 Score=42.92 Aligned_cols=20 Identities=30% Similarity=0.539 Sum_probs=18.8
Q ss_pred cCCceEEEeecCCCCCccee
Q psy7270 87 EGYNVCIFAYGQTGAGKSYT 106 (459)
Q Consensus 87 ~G~n~ti~aYGqTgSGKT~T 106 (459)
++.|.||+.-|.+|||||.+
T Consensus 143 ~~~~QsIiisGESGAGKTe~ 162 (995)
T 2ycu_A 143 DREDQSILCTGESGAGKTEN 162 (995)
T ss_dssp HCCCEEEEEECBTTSSHHHH
T ss_pred cCCCcEEEecCCCCCCchhh
Confidence 69999999999999999976
No 252
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=49.18 E-value=4.6 Score=35.95 Aligned_cols=16 Identities=25% Similarity=0.424 Sum_probs=12.8
Q ss_pred EEEeecCCCCCcceee
Q psy7270 92 CIFAYGQTGAGKSYTM 107 (459)
Q Consensus 92 ti~aYGqTgSGKT~Tm 107 (459)
.+.-.|++|||||..+
T Consensus 22 i~~l~GpnGsGKSTLl 37 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVV 37 (207)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4455699999999876
No 253
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=49.14 E-value=11 Score=40.29 Aligned_cols=40 Identities=28% Similarity=0.349 Sum_probs=27.9
Q ss_pred CCCCCHHHHHHHHHHHHHHHhhcCCceEEEeecCCCCCcceeecc
Q psy7270 65 SNFATQAMVYSDIGEEMLEHAFEGYNVCIFAYGQTGAGKSYTMMG 109 (459)
Q Consensus 65 ~~~~sQ~~vy~~~~~plv~~~l~G~n~ti~aYGqTgSGKT~Tm~G 109 (459)
.|...|..-+.. +++.+-.|... ....|.|||||||||..
T Consensus 8 ~~~~~q~~ai~~----l~~~~~~~~~~-~~l~g~tgs~kt~~~a~ 47 (664)
T 1c4o_A 8 SPKGDQPKAIAG----LVEALRDGERF-VTLLGATGTGKTVTMAK 47 (664)
T ss_dssp CCCTTHHHHHHH----HHHHHHTTCSE-EEEEECTTSCHHHHHHH
T ss_pred CCCCCChHHHHH----HHHHHhcCCCc-EEEEcCCCcHHHHHHHH
Confidence 455788777654 45666667543 34569999999999853
No 254
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=48.86 E-value=13 Score=36.65 Aligned_cols=21 Identities=38% Similarity=0.814 Sum_probs=17.8
Q ss_pred cCCceEEEeecCCCCCcceee
Q psy7270 87 EGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 87 ~G~n~ti~aYGqTgSGKT~Tm 107 (459)
.|.-..|+-+|+.|||||+..
T Consensus 21 ~g~~~~i~l~G~~G~GKTTl~ 41 (359)
T 2ga8_A 21 DNYRVCVILVGSPGSGKSTIA 41 (359)
T ss_dssp TCSCEEEEEECCTTSSHHHHH
T ss_pred cCCeeEEEEECCCCCcHHHHH
Confidence 576677889999999999865
No 255
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=48.79 E-value=6.8 Score=34.57 Aligned_cols=19 Identities=32% Similarity=0.464 Sum_probs=14.9
Q ss_pred CceEEEeecCCCCCcceee
Q psy7270 89 YNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 89 ~n~ti~aYGqTgSGKT~Tm 107 (459)
-...|.-.|++|||||+.+
T Consensus 24 ~g~~i~l~G~sGsGKSTl~ 42 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLA 42 (200)
T ss_dssp CCEEEEEECSTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3456778899999998754
No 256
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=48.76 E-value=4.4 Score=35.99 Aligned_cols=16 Identities=31% Similarity=0.615 Sum_probs=13.4
Q ss_pred EEEeecCCCCCcceee
Q psy7270 92 CIFAYGQTGAGKSYTM 107 (459)
Q Consensus 92 ti~aYGqTgSGKT~Tm 107 (459)
.+.-.|++|||||.++
T Consensus 3 ~i~i~G~nG~GKTTll 18 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLI 18 (189)
T ss_dssp CEEEESCCSSCHHHHH
T ss_pred EEEEECCCCChHHHHH
Confidence 3567899999999876
No 257
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=48.68 E-value=5.7 Score=33.59 Aligned_cols=16 Identities=25% Similarity=0.046 Sum_probs=13.0
Q ss_pred EEEeecCCCCCcceee
Q psy7270 92 CIFAYGQTGAGKSYTM 107 (459)
Q Consensus 92 ti~aYGqTgSGKT~Tm 107 (459)
.|+-.|..|||||+..
T Consensus 3 ~i~l~G~~GsGKsT~~ 18 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVA 18 (173)
T ss_dssp EEEEECSSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4677899999998753
No 258
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=48.63 E-value=5.7 Score=39.98 Aligned_cols=16 Identities=25% Similarity=0.227 Sum_probs=13.7
Q ss_pred EEEeecCCCCCcceee
Q psy7270 92 CIFAYGQTGAGKSYTM 107 (459)
Q Consensus 92 ti~aYGqTgSGKT~Tm 107 (459)
.++..|+||||||...
T Consensus 4 ~~lv~a~TGsGKT~~~ 19 (431)
T 2v6i_A 4 LTVLDLHPGAGKTRRV 19 (431)
T ss_dssp EEEEECCTTSCTTTTH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 4688999999999874
No 259
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=47.94 E-value=8.2 Score=36.67 Aligned_cols=17 Identities=24% Similarity=0.239 Sum_probs=15.1
Q ss_pred eEEEeecCCCCCcceee
Q psy7270 91 VCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 91 ~ti~aYGqTgSGKT~Tm 107 (459)
..++-||+.|+|||..+
T Consensus 32 ~~v~i~G~~G~GKT~Ll 48 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLL 48 (350)
T ss_dssp SEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCcCCHHHHH
Confidence 67889999999999875
No 260
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=47.90 E-value=5.4 Score=39.34 Aligned_cols=17 Identities=29% Similarity=0.593 Sum_probs=14.7
Q ss_pred eEEEeecCCCCCcceee
Q psy7270 91 VCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 91 ~ti~aYGqTgSGKT~Tm 107 (459)
..|.-.|++|||||.|+
T Consensus 158 ~vi~lvG~nGsGKTTll 174 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTSL 174 (359)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred eEEEEEcCCCChHHHHH
Confidence 36778899999999987
No 261
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=47.76 E-value=8.3 Score=43.65 Aligned_cols=23 Identities=22% Similarity=0.239 Sum_probs=17.7
Q ss_pred HHHHhhcCCceEEEeecCCCCCcce
Q psy7270 81 MLEHAFEGYNVCIFAYGQTGAGKSY 105 (459)
Q Consensus 81 lv~~~l~G~n~ti~aYGqTgSGKT~ 105 (459)
++..+++|.| +++.++||||||.
T Consensus 64 ai~~il~g~d--vlv~apTGSGKTl 86 (1054)
T 1gku_B 64 WAKRILRKES--FAATAPTGVGKTS 86 (1054)
T ss_dssp HHHHHHTTCC--EECCCCBTSCSHH
T ss_pred HHHHHHhCCC--EEEEcCCCCCHHH
Confidence 4456678866 5788999999994
No 262
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=47.47 E-value=11 Score=36.36 Aligned_cols=35 Identities=9% Similarity=0.123 Sum_probs=23.7
Q ss_pred CHHHHHHHHHHHHHHHhhcCC-ceEEEeecCCCCCcceee
Q psy7270 69 TQAMVYSDIGEEMLEHAFEGY-NVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 69 sQ~~vy~~~~~plv~~~l~G~-n~ti~aYGqTgSGKT~Tm 107 (459)
-|+++++.. ...+-.|. ...++-||+.|+|||.+.
T Consensus 6 w~~~~~~~l----~~~i~~~~~~~a~L~~G~~G~GKt~~a 41 (334)
T 1a5t_A 6 WLRPDFEKL----VASYQAGRGHHALLIQALPGMGDDALI 41 (334)
T ss_dssp GGHHHHHHH----HHHHHTTCCCSEEEEECCTTSCHHHHH
T ss_pred chHHHHHHH----HHHHHcCCcceeEEEECCCCchHHHHH
Confidence 456666543 33444554 456889999999999864
No 263
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=47.36 E-value=9.2 Score=39.47 Aligned_cols=16 Identities=38% Similarity=0.644 Sum_probs=14.1
Q ss_pred EEEeecCCCCCcceee
Q psy7270 92 CIFAYGQTGAGKSYTM 107 (459)
Q Consensus 92 ti~aYGqTgSGKT~Tm 107 (459)
.|.-.|++|||||.++
T Consensus 295 VI~LVGpNGSGKTTLl 310 (503)
T 2yhs_A 295 VILMVGVNGVGKTTTI 310 (503)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCcccHHHHH
Confidence 6777899999999987
No 264
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=47.28 E-value=11 Score=42.53 Aligned_cols=21 Identities=29% Similarity=0.415 Sum_probs=19.2
Q ss_pred cCCceEEEeecCCCCCcceee
Q psy7270 87 EGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 87 ~G~n~ti~aYGqTgSGKT~Tm 107 (459)
.+.|-||+.-|.+|||||.+.
T Consensus 141 ~~~nQsIiiSGESGAGKTest 161 (1052)
T 4anj_A 141 LKLSQSIIVSGESGAGKTENT 161 (1052)
T ss_dssp HTCCEEEEEECSTTSSHHHHH
T ss_pred hCCCceEEEecCCCCCHHHHH
Confidence 699999999999999999763
No 265
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=47.17 E-value=21 Score=38.90 Aligned_cols=108 Identities=20% Similarity=0.206 Sum_probs=53.7
Q ss_pred EEEeecCCCCCcceee---ccCCCCCCCCChHHHHHHHHHHHHhhccCCcceecccCCcceEeeeCCCCceecCCccccc
Q psy7270 92 CIFAYGQTGAGKSYTM---MGRQEVEGEEGIIPMICQDLFKRIKDTTNDKLKSRWKNSNLRVREHPLLGPYVEDLSKLAV 168 (459)
Q Consensus 92 ti~aYGqTgSGKT~Tm---~G~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~~~~~~~l~i~e~~~~g~~v~~l~~~~v 168 (459)
.|...|.+++|||..+ .|..--+...|++.|+ .-.+.+...+.....+.......+
T Consensus 53 ~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~---------------------Pl~l~l~~~~~~~~~~l~~~~~~~ 111 (772)
T 3zvr_A 53 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRR---------------------PLVLQLVNSTTEYAEFLHCKGKKF 111 (772)
T ss_dssp EEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSS---------------------CEEEEEEECSSCEEECSTTTTCCB
T ss_pred EEEEECCCCCcHHHHHHHHhCCCccCcCCcccccc---------------------ceEEEeecCCcchhheeccCCccc
Confidence 6889999999999754 5543223334443321 001111111111001112223456
Q ss_pred cCHHHHHHHHHHHhhccccccccCCCCCCCceEEEEEEEEEeeecCCCCccceeEeceeeeccCCCccc
Q psy7270 169 TCYRDIHDLIDEGNKARTVAATNMNETSSRSHAVFTIFFTQQAVDDMTDLTTEKVSKISLVDLAGSERA 237 (459)
Q Consensus 169 ~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~~~~~~~s~L~~VDLAGsEr~ 237 (459)
.+.+++...+........ +. |. .-|.-.+.+.+.... ...|.||||+|--..
T Consensus 112 ~~~~~v~~~I~~~~~~~~-g~---~~--~is~~~i~l~I~~P~-----------~~qL~LVDTPGi~~~ 163 (772)
T 3zvr_A 112 TDFEEVRLEIEAETDRVT-GT---NK--GISPVPINLRVYSPH-----------VLNLTLVDLPGMTKV 163 (772)
T ss_dssp CCHHHHHHHHHHHHHHHH-CS---TT--CCCSCCEEEEEEETT-----------CCSEEEEECCCCCCC
T ss_pred CCHHHHHHHHHHHHhhhc-CC---CC--cccccceEEEEecCC-----------CCceEEEECCCcccC
Confidence 788888887765443221 11 11 112334455554321 146899999997664
No 266
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=46.85 E-value=17 Score=41.64 Aligned_cols=20 Identities=30% Similarity=0.539 Sum_probs=18.6
Q ss_pred cCCceEEEeecCCCCCccee
Q psy7270 87 EGYNVCIFAYGQTGAGKSYT 106 (459)
Q Consensus 87 ~G~n~ti~aYGqTgSGKT~T 106 (459)
++.|.||+..|-+|||||.+
T Consensus 166 ~~~~Q~i~isGeSGaGKTe~ 185 (1184)
T 1i84_S 166 DREDQSILCTGESGAGKTEN 185 (1184)
T ss_dssp HTCCEEEECCCSTTSSTTHH
T ss_pred cCCCcEEEEecCCCCCccHH
Confidence 69999999999999999965
No 267
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=46.57 E-value=4.6 Score=36.46 Aligned_cols=15 Identities=27% Similarity=0.572 Sum_probs=12.1
Q ss_pred EEeecCCCCCcceee
Q psy7270 93 IFAYGQTGAGKSYTM 107 (459)
Q Consensus 93 i~aYGqTgSGKT~Tm 107 (459)
+.-.|++|||||..+
T Consensus 26 ~~lvGpsGsGKSTLl 40 (218)
T 1z6g_A 26 LVICGPSGVGKGTLI 40 (218)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 445699999999876
No 268
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=46.45 E-value=5.3 Score=38.45 Aligned_cols=17 Identities=29% Similarity=0.540 Sum_probs=14.8
Q ss_pred eEEEeecCCCCCcceee
Q psy7270 91 VCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 91 ~ti~aYGqTgSGKT~Tm 107 (459)
..|+-.|++|||||+|+
T Consensus 105 ~vi~ivG~~GsGKTTl~ 121 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSC 121 (306)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEEcCCCChHHHHH
Confidence 46788899999999987
No 269
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=46.35 E-value=5 Score=34.63 Aligned_cols=16 Identities=31% Similarity=0.324 Sum_probs=13.1
Q ss_pred EEEeecCCCCCcceee
Q psy7270 92 CIFAYGQTGAGKSYTM 107 (459)
Q Consensus 92 ti~aYGqTgSGKT~Tm 107 (459)
...-+|++|||||..+
T Consensus 28 ~~~i~G~NGsGKStll 43 (182)
T 3kta_A 28 FTAIVGANGSGKSNIG 43 (182)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred cEEEECCCCCCHHHHH
Confidence 4567899999999765
No 270
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=46.20 E-value=6.7 Score=39.82 Aligned_cols=15 Identities=20% Similarity=0.197 Sum_probs=12.8
Q ss_pred EEEeecCCCCCccee
Q psy7270 92 CIFAYGQTGAGKSYT 106 (459)
Q Consensus 92 ti~aYGqTgSGKT~T 106 (459)
.++..|+||||||..
T Consensus 23 ~vlv~a~TGsGKT~~ 37 (459)
T 2z83_A 23 MTVLDLHPGSGKTRK 37 (459)
T ss_dssp EEEECCCTTSCTTTT
T ss_pred cEEEECCCCCCHHHH
Confidence 457789999999987
No 271
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=46.15 E-value=6.1 Score=35.01 Aligned_cols=16 Identities=25% Similarity=0.490 Sum_probs=12.5
Q ss_pred EEEeecCCCCCcceee
Q psy7270 92 CIFAYGQTGAGKSYTM 107 (459)
Q Consensus 92 ti~aYGqTgSGKT~Tm 107 (459)
.|+-.|++|||||..+
T Consensus 14 ~i~l~G~sGsGKsTl~ 29 (204)
T 2qor_A 14 PLVVCGPSGVGKGTLI 29 (204)
T ss_dssp CEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4667899999998643
No 272
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=46.07 E-value=6.2 Score=33.41 Aligned_cols=16 Identities=38% Similarity=0.536 Sum_probs=12.9
Q ss_pred EEEeecCCCCCcceee
Q psy7270 92 CIFAYGQTGAGKSYTM 107 (459)
Q Consensus 92 ti~aYGqTgSGKT~Tm 107 (459)
..+-+|++|||||..|
T Consensus 25 ~~~I~G~NGsGKStil 40 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLL 40 (149)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 3467899999998765
No 273
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=46.04 E-value=6.1 Score=34.40 Aligned_cols=15 Identities=33% Similarity=0.538 Sum_probs=13.1
Q ss_pred EEEeecCCCCCccee
Q psy7270 92 CIFAYGQTGAGKSYT 106 (459)
Q Consensus 92 ti~aYGqTgSGKT~T 106 (459)
.|+-.|..|||||+.
T Consensus 12 ~I~l~G~~GsGKSTv 26 (184)
T 1y63_A 12 NILITGTPGTGKTSM 26 (184)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478899999999875
No 274
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=45.86 E-value=6.7 Score=33.79 Aligned_cols=15 Identities=33% Similarity=0.581 Sum_probs=13.0
Q ss_pred EEEeecCCCCCccee
Q psy7270 92 CIFAYGQTGAGKSYT 106 (459)
Q Consensus 92 ti~aYGqTgSGKT~T 106 (459)
.|+-.|..|||||+.
T Consensus 6 ~I~l~G~~GsGKST~ 20 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQ 20 (186)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 578899999999975
No 275
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=45.85 E-value=18 Score=36.70 Aligned_cols=18 Identities=28% Similarity=0.499 Sum_probs=15.8
Q ss_pred ceEEEeecCCCCCcceee
Q psy7270 90 NVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 90 n~ti~aYGqTgSGKT~Tm 107 (459)
...|+..|++|+|||+|.
T Consensus 100 p~vIlivG~~G~GKTTt~ 117 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTV 117 (443)
T ss_dssp SEEEEEECCTTSSHHHHH
T ss_pred CeEEEEECcCCCCHHHHH
Confidence 467888999999999997
No 276
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=45.76 E-value=5.7 Score=34.39 Aligned_cols=17 Identities=24% Similarity=0.345 Sum_probs=14.1
Q ss_pred eEEEeecCCCCCcceee
Q psy7270 91 VCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 91 ~ti~aYGqTgSGKT~Tm 107 (459)
..|+-.|..|||||+..
T Consensus 6 ~~I~l~G~~GsGKST~~ 22 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLS 22 (193)
T ss_dssp EEEEEEESTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46888999999999753
No 277
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=45.50 E-value=5.9 Score=42.57 Aligned_cols=47 Identities=23% Similarity=0.558 Sum_probs=26.5
Q ss_pred hhcCCceEEEeecCCCCCcceeeccCCCCCCCCChH--HH--HHHHHHHHHhhc
Q psy7270 85 AFEGYNVCIFAYGQTGAGKSYTMMGRQEVEGEEGII--PM--ICQDLFKRIKDT 134 (459)
Q Consensus 85 ~l~G~n~ti~aYGqTgSGKT~Tm~G~~~~~~~~Gii--pr--~~~~lF~~i~~~ 134 (459)
.++|. .|+..|+||||||+.+.-.-. ....|++ |+ .+.++|+.+.+.
T Consensus 152 ~l~rk--~vlv~apTGSGKT~~al~~l~-~~~~gl~l~PtR~LA~Qi~~~l~~~ 202 (677)
T 3rc3_A 152 AMQRK--IIFHSGPTNSGKTYHAIQKYF-SAKSGVYCGPLKLLAHEIFEKSNAA 202 (677)
T ss_dssp TSCCE--EEEEECCTTSSHHHHHHHHHH-HSSSEEEEESSHHHHHHHHHHHHHT
T ss_pred hcCCC--EEEEEcCCCCCHHHHHHHHHH-hcCCeEEEeCHHHHHHHHHHHHHhc
Confidence 34553 578899999999984321100 0013332 32 567777777654
No 278
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=45.48 E-value=6.3 Score=39.77 Aligned_cols=21 Identities=24% Similarity=0.241 Sum_probs=15.9
Q ss_pred hhcCCceEEEeecCCCCCcceee
Q psy7270 85 AFEGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 85 ~l~G~n~ti~aYGqTgSGKT~Tm 107 (459)
+++|.| ++..|+||||||...
T Consensus 5 l~~g~~--vlv~a~TGSGKT~~~ 25 (440)
T 1yks_A 5 LKKGMT--TVLDFHPGAGKTRRF 25 (440)
T ss_dssp TSTTCE--EEECCCTTSSTTTTH
T ss_pred hhCCCC--EEEEcCCCCCHHHHH
Confidence 345555 578899999999873
No 279
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=45.22 E-value=11 Score=36.64 Aligned_cols=29 Identities=17% Similarity=0.307 Sum_probs=22.3
Q ss_pred HHHHHHhhc-CCc--eEEEeecCCCCCcceee
Q psy7270 79 EEMLEHAFE-GYN--VCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 79 ~plv~~~l~-G~n--~ti~aYGqTgSGKT~Tm 107 (459)
-+-++.++. |+. ..+.-||++|||||..+
T Consensus 108 ~~~LD~~LgGGl~~G~i~~I~G~~GsGKTtla 139 (343)
T 1v5w_A 108 SQEFDKLLGGGIESMAITEAFGEFRTGKTQLS 139 (343)
T ss_dssp CHHHHHHTTSSBCSSEEEEEECCTTCTHHHHH
T ss_pred ChhHHHHhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 356888886 443 56789999999999754
No 280
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=44.87 E-value=40 Score=29.53 Aligned_cols=22 Identities=18% Similarity=0.274 Sum_probs=10.4
Q ss_pred HHHHHHHHHchHHHHHHHHHHH
Q psy7270 398 AQVELLEKQGVDLKQEMQQRLR 419 (459)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~ 419 (459)
++++.+.+++.+++.++.....
T Consensus 113 akI~aL~~Ei~~Lr~qL~~~R~ 134 (175)
T 3lay_A 113 AKINAVAKEMESLGQKLDEQRV 134 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555444444443333
No 281
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=44.76 E-value=7 Score=33.72 Aligned_cols=16 Identities=38% Similarity=0.729 Sum_probs=13.4
Q ss_pred eEEEeecCCCCCccee
Q psy7270 91 VCIFAYGQTGAGKSYT 106 (459)
Q Consensus 91 ~ti~aYGqTgSGKT~T 106 (459)
..|+-.|..|||||+.
T Consensus 4 ~~I~l~G~~GsGKsT~ 19 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQ 19 (196)
T ss_dssp EEEEEECCTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 3578899999999875
No 282
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=44.74 E-value=17 Score=31.07 Aligned_cols=17 Identities=29% Similarity=0.598 Sum_probs=13.8
Q ss_pred eEEEeecCCCCCcceee
Q psy7270 91 VCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 91 ~ti~aYGqTgSGKT~Tm 107 (459)
..+.-.|+.|||||..+
T Consensus 34 e~v~L~G~nGaGKTTLl 50 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLT 50 (158)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 35667799999999865
No 283
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=44.12 E-value=6.7 Score=35.15 Aligned_cols=16 Identities=31% Similarity=0.567 Sum_probs=13.5
Q ss_pred EEEeecCCCCCcceee
Q psy7270 92 CIFAYGQTGAGKSYTM 107 (459)
Q Consensus 92 ti~aYGqTgSGKT~Tm 107 (459)
.++-+|..|||||+.+
T Consensus 7 i~l~tG~pGsGKT~~a 22 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKM 22 (199)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEEeCCCCCHHHHH
Confidence 4578899999999865
No 284
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=43.72 E-value=6.9 Score=33.19 Aligned_cols=16 Identities=31% Similarity=0.432 Sum_probs=13.0
Q ss_pred EEEeecCCCCCcceee
Q psy7270 92 CIFAYGQTGAGKSYTM 107 (459)
Q Consensus 92 ti~aYGqTgSGKT~Tm 107 (459)
.|+-.|..|||||+..
T Consensus 4 ~I~l~G~~GsGKsT~a 19 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVG 19 (173)
T ss_dssp CEEEESCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4778899999998753
No 285
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=43.63 E-value=11 Score=35.98 Aligned_cols=30 Identities=23% Similarity=0.313 Sum_probs=22.9
Q ss_pred HHHHHHHhhc-CCc--eEEEeecCCCCCcceee
Q psy7270 78 GEEMLEHAFE-GYN--VCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 78 ~~plv~~~l~-G~n--~ti~aYGqTgSGKT~Tm 107 (459)
+-+-++.++. |+. ..++-||++|||||..+
T Consensus 83 G~~~LD~~l~GGl~~g~i~~i~G~~gsGKT~la 115 (322)
T 2i1q_A 83 SSSELDSVLGGGLESQSVTEFAGVFGSGKTQIM 115 (322)
T ss_dssp SCHHHHHHTTSSEETTEEEEEEESTTSSHHHHH
T ss_pred CChhHHHhcCCCccCCeEEEEECCCCCCHHHHH
Confidence 3467888885 443 57899999999999754
No 286
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=43.62 E-value=8.8 Score=37.27 Aligned_cols=16 Identities=44% Similarity=0.569 Sum_probs=13.5
Q ss_pred eEEEeecCCCCCccee
Q psy7270 91 VCIFAYGQTGAGKSYT 106 (459)
Q Consensus 91 ~ti~aYGqTgSGKT~T 106 (459)
-.|+-.|+||||||..
T Consensus 6 ~~i~i~GptGsGKTtl 21 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDL 21 (323)
T ss_dssp EEEEEECCTTSCHHHH
T ss_pred cEEEEECCCCCCHHHH
Confidence 4688899999999863
No 287
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=43.59 E-value=11 Score=37.28 Aligned_cols=17 Identities=18% Similarity=0.153 Sum_probs=14.2
Q ss_pred eEEEeecCCCCCcceee
Q psy7270 91 VCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 91 ~ti~aYGqTgSGKT~Tm 107 (459)
..|.-+|++|||||..+
T Consensus 170 ~~i~l~G~~GsGKSTl~ 186 (377)
T 1svm_A 170 RYWLFKGPIDSGKTTLA 186 (377)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 36788999999998765
No 288
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=43.46 E-value=7.8 Score=33.09 Aligned_cols=17 Identities=29% Similarity=0.360 Sum_probs=13.8
Q ss_pred eEEEeecCCCCCcceee
Q psy7270 91 VCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 91 ~ti~aYGqTgSGKT~Tm 107 (459)
..|+-.|+.|||||+.+
T Consensus 9 ~~i~l~G~~GsGKSTl~ 25 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVA 25 (175)
T ss_dssp EEEEEECSTTSCHHHHH
T ss_pred cEEEEEcCCCCCHHHHH
Confidence 35778899999998754
No 289
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=43.32 E-value=8.5 Score=33.53 Aligned_cols=20 Identities=30% Similarity=0.308 Sum_probs=15.4
Q ss_pred cCCceEEEeecCCCCCccee
Q psy7270 87 EGYNVCIFAYGQTGAGKSYT 106 (459)
Q Consensus 87 ~G~n~ti~aYGqTgSGKT~T 106 (459)
.+..-.|.-.|++|||||+.
T Consensus 5 ~~~~~~I~i~G~~GsGKST~ 24 (203)
T 1uf9_A 5 AKHPIIIGITGNIGSGKSTV 24 (203)
T ss_dssp -CCCEEEEEEECTTSCHHHH
T ss_pred ccCceEEEEECCCCCCHHHH
Confidence 34456788899999999875
No 290
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=43.10 E-value=6.3 Score=41.06 Aligned_cols=39 Identities=18% Similarity=0.075 Sum_probs=22.7
Q ss_pred CHHHHHHHHHHHHH-HHhh-cCCceEEEeecCCCCCcceee
Q psy7270 69 TQAMVYSDIGEEML-EHAF-EGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 69 sQ~~vy~~~~~plv-~~~l-~G~n~ti~aYGqTgSGKT~Tm 107 (459)
.++++-..+..-++ ..+- ..-...++-||++|+|||+.+
T Consensus 85 G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtla 125 (543)
T 3m6a_A 85 GLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLA 125 (543)
T ss_dssp SCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHH
Confidence 44555555443222 2211 222346889999999999864
No 291
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=42.60 E-value=7.4 Score=37.06 Aligned_cols=17 Identities=24% Similarity=0.296 Sum_probs=15.2
Q ss_pred eEEEeecCCCCCcceee
Q psy7270 91 VCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 91 ~ti~aYGqTgSGKT~Tm 107 (459)
..++-||+.|+|||..+
T Consensus 31 ~~v~i~G~~G~GKT~L~ 47 (357)
T 2fna_A 31 PITLVLGLRRTGKSSII 47 (357)
T ss_dssp SEEEEEESTTSSHHHHH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 58899999999999875
No 292
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=42.47 E-value=7 Score=33.68 Aligned_cols=16 Identities=31% Similarity=0.376 Sum_probs=13.1
Q ss_pred EEEeecCCCCCcceee
Q psy7270 92 CIFAYGQTGAGKSYTM 107 (459)
Q Consensus 92 ti~aYGqTgSGKT~Tm 107 (459)
.|+-.|..|||||+..
T Consensus 3 ~I~i~G~~GsGKsT~~ 18 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVL 18 (194)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4778999999998643
No 293
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=42.37 E-value=6.9 Score=42.10 Aligned_cols=21 Identities=29% Similarity=0.335 Sum_probs=15.6
Q ss_pred hhcCCceEEEeecCCCCCcceee
Q psy7270 85 AFEGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 85 ~l~G~n~ti~aYGqTgSGKT~Tm 107 (459)
+.+|.| ++..|+||||||...
T Consensus 36 ~~~~~~--~lv~apTGsGKT~~~ 56 (720)
T 2zj8_A 36 ILEGKN--ALISIPTASGKTLIA 56 (720)
T ss_dssp GGGTCE--EEEECCGGGCHHHHH
T ss_pred hcCCCc--EEEEcCCccHHHHHH
Confidence 345544 688899999999654
No 294
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=42.32 E-value=8.2 Score=34.91 Aligned_cols=21 Identities=33% Similarity=0.563 Sum_probs=15.9
Q ss_pred cCCceEEEeecCCCCCcceee
Q psy7270 87 EGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 87 ~G~n~ti~aYGqTgSGKT~Tm 107 (459)
+-+...|+-.|+||||||...
T Consensus 31 ~~~g~~ilI~GpsGsGKStLA 51 (205)
T 2qmh_A 31 DIYGLGVLITGDSGVGKSETA 51 (205)
T ss_dssp EETTEEEEEECCCTTTTHHHH
T ss_pred EECCEEEEEECCCCCCHHHHH
Confidence 334556888999999998654
No 295
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=42.15 E-value=7.7 Score=33.23 Aligned_cols=15 Identities=40% Similarity=0.428 Sum_probs=12.4
Q ss_pred EEEeecCCCCCccee
Q psy7270 92 CIFAYGQTGAGKSYT 106 (459)
Q Consensus 92 ti~aYGqTgSGKT~T 106 (459)
.|+-.|+.|||||+.
T Consensus 6 ~i~i~G~~GsGKsTl 20 (175)
T 1via_A 6 NIVFIGFMGSGKSTL 20 (175)
T ss_dssp CEEEECCTTSCHHHH
T ss_pred EEEEEcCCCCCHHHH
Confidence 367789999999875
No 296
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=42.13 E-value=9.6 Score=34.16 Aligned_cols=24 Identities=17% Similarity=0.135 Sum_probs=14.0
Q ss_pred HHHHhhcCCceEEEeecCCCCCcc
Q psy7270 81 MLEHAFEGYNVCIFAYGQTGAGKS 104 (459)
Q Consensus 81 lv~~~l~G~n~ti~aYGqTgSGKT 104 (459)
+|.......--..|-||+.|||||
T Consensus 11 ~~~~~~~~~g~l~fiyG~MgsGKT 34 (195)
T 1w4r_A 11 LVPRGSKTRGQIQVILGPMFSGKS 34 (195)
T ss_dssp --------CCEEEEEEECTTSCHH
T ss_pred ccccCCCCceEEEEEECCCCCcHH
Confidence 344444444557899999999999
No 297
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=42.12 E-value=6.7 Score=36.64 Aligned_cols=22 Identities=27% Similarity=0.563 Sum_probs=17.0
Q ss_pred hcCCceEEEeecCCCCCcceee
Q psy7270 86 FEGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 86 l~G~n~ti~aYGqTgSGKT~Tm 107 (459)
-.|+.-.|+..|.+|+|||..+
T Consensus 4 ~~g~~~~I~vvG~~g~GKSTLi 25 (274)
T 3t5d_A 4 GSGFEFTLMVVGESGLGKSTLI 25 (274)
T ss_dssp ---CEEEEEEEECTTSSHHHHH
T ss_pred cCccEEEEEEECCCCCCHHHHH
Confidence 3688999999999999998643
No 298
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=42.08 E-value=7.6 Score=33.46 Aligned_cols=15 Identities=33% Similarity=0.368 Sum_probs=12.6
Q ss_pred EEEeecCCCCCccee
Q psy7270 92 CIFAYGQTGAGKSYT 106 (459)
Q Consensus 92 ti~aYGqTgSGKT~T 106 (459)
.|+-.|..|||||+.
T Consensus 4 ~I~l~G~~GsGKsT~ 18 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTI 18 (184)
T ss_dssp SEEEECSTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 377889999999874
No 299
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=42.02 E-value=11 Score=36.25 Aligned_cols=29 Identities=21% Similarity=0.370 Sum_probs=22.1
Q ss_pred HHHHHHhhc-CC--ceEEEeecCCCCCcceee
Q psy7270 79 EEMLEHAFE-GY--NVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 79 ~plv~~~l~-G~--n~ti~aYGqTgSGKT~Tm 107 (459)
-+-++.++. |+ ...+.-||++|||||..+
T Consensus 93 ~~~LD~~L~GGl~~G~i~~i~G~~GsGKT~la 124 (324)
T 2z43_A 93 SQALDGLLAGGIETRTMTEFFGEFGSGKTQLC 124 (324)
T ss_dssp CHHHHHHTTTSEETTSEEEEEESTTSSHHHHH
T ss_pred chhHHHhcCCCCCCCcEEEEECCCCCCHhHHH
Confidence 367888885 44 346888999999999754
No 300
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=42.00 E-value=11 Score=42.57 Aligned_cols=21 Identities=24% Similarity=0.305 Sum_probs=16.3
Q ss_pred HhhcCCceEEEeecCCCCCccee
Q psy7270 84 HAFEGYNVCIFAYGQTGAGKSYT 106 (459)
Q Consensus 84 ~~l~G~n~ti~aYGqTgSGKT~T 106 (459)
.++.|.| ++..++||||||..
T Consensus 97 ~l~~g~~--vLV~apTGSGKTlv 117 (1010)
T 2xgj_A 97 CIDRGES--VLVSAHTSAGKTVV 117 (1010)
T ss_dssp HHHHTCE--EEEECCTTSCHHHH
T ss_pred HHHcCCC--EEEECCCCCChHHH
Confidence 3456765 67889999999975
No 301
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=41.71 E-value=13 Score=38.74 Aligned_cols=33 Identities=21% Similarity=0.212 Sum_probs=21.5
Q ss_pred CHHHHHHHHHHHHHHHhhcCCceEEEeecCCCCCcceee
Q psy7270 69 TQAMVYSDIGEEMLEHAFEGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 69 sQ~~vy~~~~~plv~~~l~G~n~ti~aYGqTgSGKT~Tm 107 (459)
.|.++-.. +.+.+..|.++ ++-.+||||||.+.
T Consensus 7 ~Q~~~~~~----v~~~l~~~~~~--~~~a~TGtGKT~~~ 39 (551)
T 3crv_A 7 WQEKLKDK----VIEGLRNNFLV--ALNAPTGSGKTLFS 39 (551)
T ss_dssp HHHHHHHH----HHHHHHTTCEE--EEECCTTSSHHHHH
T ss_pred HHHHHHHH----HHHHHHcCCcE--EEECCCCccHHHHH
Confidence 45555433 44556678654 55678999999765
No 302
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=41.65 E-value=7.9 Score=34.03 Aligned_cols=17 Identities=35% Similarity=0.427 Sum_probs=13.8
Q ss_pred eEEEeecCCCCCcceee
Q psy7270 91 VCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 91 ~ti~aYGqTgSGKT~Tm 107 (459)
..|+-.|..|||||+..
T Consensus 19 ~~I~l~G~~GsGKSTla 35 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVG 35 (202)
T ss_dssp SCEEEECSTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35788999999998743
No 303
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=41.65 E-value=91 Score=25.26 Aligned_cols=13 Identities=31% Similarity=0.424 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHH
Q psy7270 420 DLEEQYKREKNEA 432 (459)
Q Consensus 420 ~~~~~~~~~~~e~ 432 (459)
+||.+++-.++|+
T Consensus 87 dLE~~iesL~eEl 99 (119)
T 3ol1_A 87 DLERKVESLQEEI 99 (119)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444444433333
No 304
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=41.63 E-value=9.8 Score=43.32 Aligned_cols=24 Identities=21% Similarity=0.299 Sum_probs=18.1
Q ss_pred HHHHhhcCCceEEEeecCCCCCccee
Q psy7270 81 MLEHAFEGYNVCIFAYGQTGAGKSYT 106 (459)
Q Consensus 81 lv~~~l~G~n~ti~aYGqTgSGKT~T 106 (459)
.+..++.|.+ ++..|+||||||..
T Consensus 192 AI~~i~~g~d--vLV~ApTGSGKTlv 215 (1108)
T 3l9o_A 192 AISCIDRGES--VLVSAHTSAGKTVV 215 (1108)
T ss_dssp HHHHHTTTCC--EEEECCSSSHHHHH
T ss_pred HHHHHHcCCC--EEEECCCCCChHHH
Confidence 3445577766 57889999999965
No 305
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=41.57 E-value=11 Score=42.73 Aligned_cols=24 Identities=21% Similarity=0.275 Sum_probs=18.8
Q ss_pred HHHHhhcCCceEEEeecCCCCCccee
Q psy7270 81 MLEHAFEGYNVCIFAYGQTGAGKSYT 106 (459)
Q Consensus 81 lv~~~l~G~n~ti~aYGqTgSGKT~T 106 (459)
.+..++.|.| +++.++||||||..
T Consensus 86 ai~~il~g~d--vlv~ApTGSGKTl~ 109 (1104)
T 4ddu_A 86 WAKRIVQGKS--FTMVAPTGVGKTTF 109 (1104)
T ss_dssp HHHHHTTTCC--EEECCSTTCCHHHH
T ss_pred HHHHHHcCCC--EEEEeCCCCcHHHH
Confidence 4566778876 57889999999983
No 306
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=41.50 E-value=7 Score=41.92 Aligned_cols=30 Identities=30% Similarity=0.348 Sum_probs=21.1
Q ss_pred CCHHHHHHHHHHHHHHHhhcCCceEEEeecCCCCCcceee
Q psy7270 68 ATQAMVYSDIGEEMLEHAFEGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 68 ~sQ~~vy~~~~~plv~~~l~G~n~ti~aYGqTgSGKT~Tm 107 (459)
.-|.+++.. +++|.| ++..|+||||||...
T Consensus 28 ~~Q~~~i~~--------i~~~~~--~lv~apTGsGKT~~~ 57 (702)
T 2p6r_A 28 PPQAEAVEK--------VFSGKN--LLLAMPTAAGKTLLA 57 (702)
T ss_dssp CCCHHHHHH--------HTTCSC--EEEECSSHHHHHHHH
T ss_pred HHHHHHHHH--------HhCCCc--EEEEcCCccHHHHHH
Confidence 457666644 345655 577899999999764
No 307
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=41.45 E-value=8.5 Score=32.96 Aligned_cols=16 Identities=38% Similarity=0.522 Sum_probs=9.5
Q ss_pred eEEEeecCCCCCccee
Q psy7270 91 VCIFAYGQTGAGKSYT 106 (459)
Q Consensus 91 ~ti~aYGqTgSGKT~T 106 (459)
..|+-.|..|||||+.
T Consensus 6 ~~I~l~G~~GsGKST~ 21 (183)
T 2vli_A 6 PIIWINGPFGVGKTHT 21 (183)
T ss_dssp CEEEEECCC----CHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 3588899999999874
No 308
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=41.32 E-value=8.8 Score=32.39 Aligned_cols=15 Identities=33% Similarity=0.392 Sum_probs=12.6
Q ss_pred EEEeecCCCCCccee
Q psy7270 92 CIFAYGQTGAGKSYT 106 (459)
Q Consensus 92 ti~aYGqTgSGKT~T 106 (459)
.|+-.|..|||||+.
T Consensus 2 ~I~l~G~~GsGKsT~ 16 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTV 16 (168)
T ss_dssp EEEEESCTTSCHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 477889999999874
No 309
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=41.02 E-value=25 Score=33.37 Aligned_cols=16 Identities=38% Similarity=0.559 Sum_probs=13.3
Q ss_pred EEEeecCCCCCcceee
Q psy7270 92 CIFAYGQTGAGKSYTM 107 (459)
Q Consensus 92 ti~aYGqTgSGKT~Tm 107 (459)
.|...|.+|+|||+++
T Consensus 100 vi~i~G~~G~GKTT~~ 115 (297)
T 1j8m_F 100 VIMLVGVQGTGKTTTA 115 (297)
T ss_dssp EEEEECSSCSSTTHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5666799999999886
No 310
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=41.00 E-value=6.6 Score=41.22 Aligned_cols=17 Identities=35% Similarity=0.546 Sum_probs=14.3
Q ss_pred eEEEeecCCCCCcceee
Q psy7270 91 VCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 91 ~ti~aYGqTgSGKT~Tm 107 (459)
.-++..|.||||||+++
T Consensus 215 pHlLIaG~TGSGKS~~L 231 (574)
T 2iut_A 215 PHLLVAGTTGSGKSVGV 231 (574)
T ss_dssp CCEEEECCTTSSHHHHH
T ss_pred CeeEEECCCCCCHHHHH
Confidence 34688899999999876
No 311
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=40.71 E-value=18 Score=41.35 Aligned_cols=26 Identities=19% Similarity=0.290 Sum_probs=19.6
Q ss_pred HHHHhhcCCceEEEeecCCCCCccee
Q psy7270 81 MLEHAFEGYNVCIFAYGQTGAGKSYT 106 (459)
Q Consensus 81 lv~~~l~G~n~ti~aYGqTgSGKT~T 106 (459)
++.+.-.|...-++..|+||||||.+
T Consensus 615 il~~~~~g~p~d~ll~~~TGsGKT~v 640 (1151)
T 2eyq_A 615 VLSDMCQPLAMDRLVCGDVGFGKTEV 640 (1151)
T ss_dssp HHHHHHSSSCCEEEEECCCCTTTHHH
T ss_pred HHHHHhcCCcCcEEEECCCCCCHHHH
Confidence 34444557766789999999999965
No 312
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=40.68 E-value=7.4 Score=35.57 Aligned_cols=17 Identities=24% Similarity=0.387 Sum_probs=14.2
Q ss_pred eEEEeecCCCCCcceee
Q psy7270 91 VCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 91 ~ti~aYGqTgSGKT~Tm 107 (459)
-.|+-.|+.|||||+.+
T Consensus 28 ~~i~l~G~~GsGKSTl~ 44 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVC 44 (246)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 46788899999999864
No 313
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=40.48 E-value=7.7 Score=34.19 Aligned_cols=16 Identities=25% Similarity=0.505 Sum_probs=13.0
Q ss_pred EEEeecCCCCCcceee
Q psy7270 92 CIFAYGQTGAGKSYTM 107 (459)
Q Consensus 92 ti~aYGqTgSGKT~Tm 107 (459)
.|.-.|+.|||||..+
T Consensus 31 ~i~l~G~~GsGKSTl~ 46 (200)
T 4eun_A 31 HVVVMGVSGSGKTTIA 46 (200)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5666799999999764
No 314
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=40.40 E-value=15 Score=35.75 Aligned_cols=29 Identities=21% Similarity=0.404 Sum_probs=21.8
Q ss_pred HHHHHHhhcC-C--ceEEEeecCCCCCcceee
Q psy7270 79 EEMLEHAFEG-Y--NVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 79 ~plv~~~l~G-~--n~ti~aYGqTgSGKT~Tm 107 (459)
-+-++.+|.| + ...+.-+|++|||||..+
T Consensus 117 ~~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~ 148 (349)
T 1pzn_A 117 SKSLDKLLGGGIETQAITEVFGEFGSGKTQLA 148 (349)
T ss_dssp CHHHHHHHTSSEESSEEEEEEESTTSSHHHHH
T ss_pred CHHHHHHhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 4667888864 2 357888999999999743
No 315
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=40.39 E-value=8.3 Score=33.48 Aligned_cols=15 Identities=40% Similarity=0.669 Sum_probs=13.0
Q ss_pred EEEeecCCCCCccee
Q psy7270 92 CIFAYGQTGAGKSYT 106 (459)
Q Consensus 92 ti~aYGqTgSGKT~T 106 (459)
.|+-.|..|||||+.
T Consensus 14 ~I~l~G~~GsGKsT~ 28 (199)
T 2bwj_A 14 IIFIIGGPGSGKGTQ 28 (199)
T ss_dssp EEEEEECTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 578899999999875
No 316
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=40.33 E-value=8.1 Score=39.28 Aligned_cols=16 Identities=38% Similarity=0.515 Sum_probs=14.0
Q ss_pred eEEEeecCCCCCccee
Q psy7270 91 VCIFAYGQTGAGKSYT 106 (459)
Q Consensus 91 ~ti~aYGqTgSGKT~T 106 (459)
..|+-||++|+|||+.
T Consensus 51 ~~iLl~GppGtGKT~l 66 (444)
T 1g41_A 51 KNILMIGPTGVGKTEI 66 (444)
T ss_dssp CCEEEECCTTSSHHHH
T ss_pred ceEEEEcCCCCCHHHH
Confidence 4589999999999975
No 317
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=40.31 E-value=11 Score=40.45 Aligned_cols=20 Identities=30% Similarity=0.512 Sum_probs=15.3
Q ss_pred hcCCceEEEeecCCCCCcceee
Q psy7270 86 FEGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 86 l~G~n~ti~aYGqTgSGKT~Tm 107 (459)
.+|. .++..|+||||||...
T Consensus 44 ~~~~--~~lv~apTGsGKT~~~ 63 (715)
T 2va8_A 44 LEGN--RLLLTSPTGSGKTLIA 63 (715)
T ss_dssp TTTC--CEEEECCTTSCHHHHH
T ss_pred cCCC--cEEEEcCCCCcHHHHH
Confidence 4454 4678899999999874
No 318
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=40.30 E-value=10 Score=41.34 Aligned_cols=24 Identities=21% Similarity=0.403 Sum_probs=16.1
Q ss_pred HHHhhcCCceEEEeecCCCCCccee
Q psy7270 82 LEHAFEGYNVCIFAYGQTGAGKSYT 106 (459)
Q Consensus 82 v~~~l~G~n~ti~aYGqTgSGKT~T 106 (459)
+..++.+. -.++..|+||||||..
T Consensus 102 i~~~l~~~-~~vii~gpTGSGKTtl 125 (773)
T 2xau_A 102 FLKLYQNN-QIMVFVGETGSGKTTQ 125 (773)
T ss_dssp HHHHHHHC-SEEEEECCTTSSHHHH
T ss_pred HHHHHhCC-CeEEEECCCCCCHHHH
Confidence 33444443 2467789999999983
No 319
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=40.04 E-value=9.7 Score=37.22 Aligned_cols=16 Identities=38% Similarity=0.486 Sum_probs=13.4
Q ss_pred eEEEeecCCCCCccee
Q psy7270 91 VCIFAYGQTGAGKSYT 106 (459)
Q Consensus 91 ~ti~aYGqTgSGKT~T 106 (459)
-.|+-.|+||||||..
T Consensus 41 ~lIvI~GPTgsGKTtL 56 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRL 56 (339)
T ss_dssp EEEEEECSTTSSHHHH
T ss_pred ceEEEECCCCCCHHHH
Confidence 3688999999999863
No 320
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=40.03 E-value=12 Score=39.40 Aligned_cols=26 Identities=23% Similarity=0.261 Sum_probs=18.7
Q ss_pred HHHHHhhcCCceEEEeecCCCCCcceee
Q psy7270 80 EMLEHAFEGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 80 plv~~~l~G~n~ti~aYGqTgSGKT~Tm 107 (459)
.+-..+-.|. .++-+|++|+|||+.+
T Consensus 52 ~l~~~i~~g~--~vll~Gp~GtGKTtla 77 (604)
T 3k1j_A 52 VIKTAANQKR--HVLLIGEPGTGKSMLG 77 (604)
T ss_dssp HHHHHHHTTC--CEEEECCTTSSHHHHH
T ss_pred hccccccCCC--EEEEEeCCCCCHHHHH
Confidence 3444455664 6677999999999875
No 321
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=39.88 E-value=7.3 Score=34.45 Aligned_cols=16 Identities=31% Similarity=0.270 Sum_probs=12.8
Q ss_pred EEEeecCCCCCcceee
Q psy7270 92 CIFAYGQTGAGKSYTM 107 (459)
Q Consensus 92 ti~aYGqTgSGKT~Tm 107 (459)
.|.-.|++|||||+.+
T Consensus 8 ~i~i~G~~GsGKSTl~ 23 (211)
T 3asz_A 8 VIGIAGGTASGKTTLA 23 (211)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4556799999999765
No 322
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=39.86 E-value=7.9 Score=35.13 Aligned_cols=16 Identities=31% Similarity=0.399 Sum_probs=12.8
Q ss_pred EEEeecCCCCCcceee
Q psy7270 92 CIFAYGQTGAGKSYTM 107 (459)
Q Consensus 92 ti~aYGqTgSGKT~Tm 107 (459)
.+.-.|++|||||..+
T Consensus 18 ii~l~GpsGsGKSTLl 33 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLI 33 (219)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4566799999998765
No 323
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=39.85 E-value=7.9 Score=38.02 Aligned_cols=24 Identities=25% Similarity=0.555 Sum_probs=20.6
Q ss_pred HhhcCCceEEEeecCCCCCcceee
Q psy7270 84 HAFEGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 84 ~~l~G~n~ti~aYGqTgSGKT~Tm 107 (459)
.+..|++..|...|.+|+|||..+
T Consensus 31 ~~~~~~~~~I~vvG~~g~GKSTLl 54 (361)
T 2qag_A 31 SVKKGFEFTLMVVGESGLGKSTLI 54 (361)
T ss_dssp HHHHCCEECEEECCCTTSCHHHHH
T ss_pred eecCCCCEEEEEEcCCCCCHHHHH
Confidence 357899999999999999999743
No 324
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=39.74 E-value=9.2 Score=35.44 Aligned_cols=17 Identities=35% Similarity=0.399 Sum_probs=14.1
Q ss_pred eEEEeecCCCCCcceee
Q psy7270 91 VCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 91 ~ti~aYGqTgSGKT~Tm 107 (459)
..|+-.|..|||||+..
T Consensus 5 ~lIvl~G~pGSGKSTla 21 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFS 21 (260)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred EEEEEEcCCCCCHHHHH
Confidence 36888999999998753
No 325
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=39.72 E-value=11 Score=35.97 Aligned_cols=28 Identities=7% Similarity=-0.039 Sum_probs=20.4
Q ss_pred HHHHHhhcCCceEEEeecCCCCCcceee
Q psy7270 80 EMLEHAFEGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 80 plv~~~l~G~n~ti~aYGqTgSGKT~Tm 107 (459)
.+-..+-.|..-.++-||+.|+|||.+.
T Consensus 8 ~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a 35 (305)
T 2gno_A 8 TLKRIIEKSEGISILINGEDLSYPREVS 35 (305)
T ss_dssp HHHHHHHTCSSEEEEEECSSSSHHHHHH
T ss_pred HHHHHHHCCCCcEEEEECCCCCCHHHHH
Confidence 3444445666567888999999998765
No 326
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=39.66 E-value=10 Score=36.94 Aligned_cols=17 Identities=18% Similarity=0.298 Sum_probs=13.9
Q ss_pred eEEEeecCCCCCcceee
Q psy7270 91 VCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 91 ~ti~aYGqTgSGKT~Tm 107 (459)
..++-||++|+|||+-.
T Consensus 124 sviLI~GpPGsGKTtLA 140 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLV 140 (331)
T ss_dssp EEEEEECSCSSSHHHHH
T ss_pred cEEEEEcCCCCCHHHHH
Confidence 34678999999999765
No 327
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=39.39 E-value=9.6 Score=33.40 Aligned_cols=16 Identities=44% Similarity=0.690 Sum_probs=13.4
Q ss_pred eEEEeecCCCCCccee
Q psy7270 91 VCIFAYGQTGAGKSYT 106 (459)
Q Consensus 91 ~ti~aYGqTgSGKT~T 106 (459)
-.|+-.|..|||||+.
T Consensus 16 ~~I~l~G~~GsGKsT~ 31 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQ 31 (203)
T ss_dssp EEEEEECSTTSSHHHH
T ss_pred cEEEEECCCCCCHHHH
Confidence 3578889999999975
No 328
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=39.31 E-value=1.5e+02 Score=23.91 Aligned_cols=13 Identities=15% Similarity=0.547 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHH
Q psy7270 414 MQQRLRDLEEQYK 426 (459)
Q Consensus 414 ~~~~~~~~~~~~~ 426 (459)
++.++..|.+++.
T Consensus 88 LE~~iesL~eEl~ 100 (119)
T 3ol1_A 88 LERKVESLQEEIA 100 (119)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444433
No 329
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=39.10 E-value=8.2 Score=33.70 Aligned_cols=16 Identities=25% Similarity=0.246 Sum_probs=12.6
Q ss_pred EEEeecCCCCCcceee
Q psy7270 92 CIFAYGQTGAGKSYTM 107 (459)
Q Consensus 92 ti~aYGqTgSGKT~Tm 107 (459)
.|.-.|.+|||||..+
T Consensus 6 ~i~i~G~sGsGKTTl~ 21 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLM 21 (169)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3566799999998765
No 330
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=39.06 E-value=8.2 Score=34.71 Aligned_cols=16 Identities=25% Similarity=0.360 Sum_probs=13.4
Q ss_pred EEEeecCCCCCcceee
Q psy7270 92 CIFAYGQTGAGKSYTM 107 (459)
Q Consensus 92 ti~aYGqTgSGKT~Tm 107 (459)
.|+-.|.+|||||+..
T Consensus 9 ~I~l~G~~GsGKsT~a 24 (227)
T 1zd8_A 9 RAVIMGAPGSGKGTVS 24 (227)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5788899999999753
No 331
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=39.02 E-value=8.9 Score=34.24 Aligned_cols=15 Identities=33% Similarity=0.496 Sum_probs=12.9
Q ss_pred EEEeecCCCCCccee
Q psy7270 92 CIFAYGQTGAGKSYT 106 (459)
Q Consensus 92 ti~aYGqTgSGKT~T 106 (459)
.|+-.|..|||||+.
T Consensus 6 ~I~l~G~~GsGKsT~ 20 (220)
T 1aky_A 6 RMVLIGPPGAGKGTQ 20 (220)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 578899999999874
No 332
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=38.95 E-value=10 Score=36.58 Aligned_cols=16 Identities=38% Similarity=0.557 Sum_probs=13.0
Q ss_pred eEEEeecCCCCCccee
Q psy7270 91 VCIFAYGQTGAGKSYT 106 (459)
Q Consensus 91 ~ti~aYGqTgSGKT~T 106 (459)
-.|+-.|+||||||.-
T Consensus 11 ~~i~i~GptgsGKt~l 26 (316)
T 3foz_A 11 KAIFLMGPTASGKTAL 26 (316)
T ss_dssp EEEEEECCTTSCHHHH
T ss_pred cEEEEECCCccCHHHH
Confidence 3577899999999854
No 333
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=38.91 E-value=9.1 Score=34.41 Aligned_cols=13 Identities=38% Similarity=0.626 Sum_probs=11.4
Q ss_pred EEeecCCCCCcce
Q psy7270 93 IFAYGQTGAGKSY 105 (459)
Q Consensus 93 i~aYGqTgSGKT~ 105 (459)
|+-.|++||||++
T Consensus 3 Iil~GpPGsGKgT 15 (206)
T 3sr0_A 3 LVFLGPPGAGKGT 15 (206)
T ss_dssp EEEECSTTSSHHH
T ss_pred EEEECCCCCCHHH
Confidence 6788999999975
No 334
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=38.83 E-value=11 Score=32.58 Aligned_cols=18 Identities=22% Similarity=0.519 Sum_probs=14.2
Q ss_pred ceEEEeecCCCCCcceee
Q psy7270 90 NVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 90 n~ti~aYGqTgSGKT~Tm 107 (459)
...|+-.|..|||||+..
T Consensus 13 ~~~i~l~G~~GsGKsT~~ 30 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIA 30 (186)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred CcEEEEEcCCCCCHHHHH
Confidence 346778899999998754
No 335
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=38.75 E-value=8.4 Score=35.34 Aligned_cols=16 Identities=31% Similarity=0.551 Sum_probs=12.6
Q ss_pred EEEeecCCCCCcceee
Q psy7270 92 CIFAYGQTGAGKSYTM 107 (459)
Q Consensus 92 ti~aYGqTgSGKT~Tm 107 (459)
.+.-.|++|||||..|
T Consensus 33 ~~~iiG~nGsGKSTLl 48 (235)
T 3tif_A 33 FVSIMGPSGSGKSTML 48 (235)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 3566799999999754
No 336
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=38.73 E-value=11 Score=31.93 Aligned_cols=27 Identities=26% Similarity=0.505 Sum_probs=19.8
Q ss_pred HHHHhhc-CCceEEEeecCCCCCcceee
Q psy7270 81 MLEHAFE-GYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 81 lv~~~l~-G~n~ti~aYGqTgSGKT~Tm 107 (459)
++..++. -....|...|.+|+|||..+
T Consensus 8 ~~~~~~~~~~~~~i~v~G~~~~GKssli 35 (183)
T 1moz_A 8 MFDKLWGSNKELRILILGLDGAGKTTIL 35 (183)
T ss_dssp HHGGGTTCSSCEEEEEEEETTSSHHHHH
T ss_pred HHHHhcCCCCccEEEEECCCCCCHHHHH
Confidence 3444454 45678899999999999654
No 337
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=38.72 E-value=9.2 Score=34.79 Aligned_cols=14 Identities=43% Similarity=0.781 Sum_probs=12.1
Q ss_pred EEEeecCCCCCcce
Q psy7270 92 CIFAYGQTGAGKSY 105 (459)
Q Consensus 92 ti~aYGqTgSGKT~ 105 (459)
.||-.|++||||++
T Consensus 31 iI~llGpPGsGKgT 44 (217)
T 3umf_A 31 VIFVLGGPGSGKGT 44 (217)
T ss_dssp EEEEECCTTCCHHH
T ss_pred EEEEECCCCCCHHH
Confidence 57889999999975
No 338
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=38.68 E-value=1.6e+02 Score=24.07 Aligned_cols=15 Identities=40% Similarity=0.483 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHH
Q psy7270 351 IRELKEEIQRLRDLL 365 (459)
Q Consensus 351 i~~l~~ei~~L~~~l 365 (459)
|.+++..|+.|..+|
T Consensus 40 i~elrr~iq~L~~el 54 (131)
T 3tnu_A 40 ISELRRTMQNLEIEL 54 (131)
T ss_dssp -CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444444
No 339
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=38.68 E-value=9.2 Score=33.90 Aligned_cols=14 Identities=43% Similarity=0.598 Sum_probs=11.9
Q ss_pred EEeecCCCCCccee
Q psy7270 93 IFAYGQTGAGKSYT 106 (459)
Q Consensus 93 i~aYGqTgSGKT~T 106 (459)
|+-.|+.|||||+.
T Consensus 3 I~l~G~~GsGKsT~ 16 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQ 16 (216)
T ss_dssp EEEECSTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 66789999999875
No 340
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=38.49 E-value=8.1 Score=41.75 Aligned_cols=21 Identities=14% Similarity=0.232 Sum_probs=16.9
Q ss_pred CceEEEeecCCCCCcceeecc
Q psy7270 89 YNVCIFAYGQTGAGKSYTMMG 109 (459)
Q Consensus 89 ~n~ti~aYGqTgSGKT~Tm~G 109 (459)
.++.++..|..|||||+||..
T Consensus 23 ~~g~~lV~AgAGSGKT~vL~~ 43 (724)
T 1pjr_A 23 TEGPLLIMAGAGSGKTRVLTH 43 (724)
T ss_dssp CSSCEEEEECTTSCHHHHHHH
T ss_pred CCCCEEEEEcCCCCHHHHHHH
Confidence 355677889999999999854
No 341
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=38.43 E-value=8.7 Score=33.03 Aligned_cols=15 Identities=33% Similarity=0.709 Sum_probs=12.9
Q ss_pred EEEeecCCCCCccee
Q psy7270 92 CIFAYGQTGAGKSYT 106 (459)
Q Consensus 92 ti~aYGqTgSGKT~T 106 (459)
.|+-.|..|||||+.
T Consensus 8 ~I~l~G~~GsGKsT~ 22 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQ 22 (194)
T ss_dssp EEEEEESTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 577889999999975
No 342
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=38.28 E-value=8.5 Score=37.19 Aligned_cols=16 Identities=25% Similarity=0.536 Sum_probs=13.7
Q ss_pred EEEeecCCCCCcceee
Q psy7270 92 CIFAYGQTGAGKSYTM 107 (459)
Q Consensus 92 ti~aYGqTgSGKT~Tm 107 (459)
.|.-.|++|+|||+|+
T Consensus 107 vI~ivG~~G~GKTT~~ 122 (320)
T 1zu4_A 107 IFMLVGVNGTGKTTSL 122 (320)
T ss_dssp EEEEESSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5667799999999987
No 343
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=38.13 E-value=7.8 Score=40.13 Aligned_cols=16 Identities=31% Similarity=0.542 Sum_probs=13.4
Q ss_pred EEEeecCCCCCcceee
Q psy7270 92 CIFAYGQTGAGKSYTM 107 (459)
Q Consensus 92 ti~aYGqTgSGKT~Tm 107 (459)
-++..|.||||||..+
T Consensus 169 HlLIaG~TGSGKSt~L 184 (512)
T 2ius_A 169 HLLVAGTTGSGASVGV 184 (512)
T ss_dssp SEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 3677899999999876
No 344
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=37.98 E-value=8.8 Score=43.34 Aligned_cols=16 Identities=31% Similarity=0.557 Sum_probs=12.8
Q ss_pred EEeecCCCCCcceeec
Q psy7270 93 IFAYGQTGAGKSYTMM 108 (459)
Q Consensus 93 i~aYGqTgSGKT~Tm~ 108 (459)
.+...+||||||+||+
T Consensus 303 gli~~~TGSGKT~t~~ 318 (1038)
T 2w00_A 303 GYIWHTTGSGKTLTSF 318 (1038)
T ss_dssp EEEEECTTSSHHHHHH
T ss_pred EEEEecCCCCHHHHHH
Confidence 3456689999999984
No 345
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=37.98 E-value=1.6e+02 Score=23.75 Aligned_cols=33 Identities=9% Similarity=0.344 Sum_probs=21.8
Q ss_pred HHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7270 404 EKQGVDLKQEMQQRLRDLEEQYKREKNEADQAF 436 (459)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 436 (459)
+++..+++.++...+++++..+.+.+.+++...
T Consensus 67 e~E~ae~k~KYD~~lqe~ese~~~kkK~le~~~ 99 (115)
T 3vem_A 67 ERKMAEVQAEFRRKFHEVEAEHNTRTTKIEKDK 99 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555666777777777777777666665543
No 346
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=37.80 E-value=3.2e+02 Score=27.43 Aligned_cols=14 Identities=21% Similarity=0.446 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHH
Q psy7270 353 ELKEEIQRLRDLLK 366 (459)
Q Consensus 353 ~l~~ei~~L~~~l~ 366 (459)
.++..|..|+..|.
T Consensus 62 dv~~rI~kLkn~L~ 75 (491)
T 1m1j_A 62 NYSQRIDNIRQQLA 75 (491)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 34445555555554
No 347
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=37.74 E-value=9.7 Score=32.94 Aligned_cols=15 Identities=40% Similarity=0.680 Sum_probs=12.9
Q ss_pred EEEeecCCCCCccee
Q psy7270 92 CIFAYGQTGAGKSYT 106 (459)
Q Consensus 92 ti~aYGqTgSGKT~T 106 (459)
.|+-.|..|||||+.
T Consensus 11 ~I~l~G~~GsGKsT~ 25 (196)
T 2c95_A 11 IIFVVGGPGSGKGTQ 25 (196)
T ss_dssp EEEEEECTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 577889999999874
No 348
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=37.65 E-value=14 Score=36.06 Aligned_cols=29 Identities=28% Similarity=0.366 Sum_probs=21.9
Q ss_pred HHHHHHhhc--CCc--eEEEeecCCCCCcceee
Q psy7270 79 EEMLEHAFE--GYN--VCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 79 ~plv~~~l~--G~n--~ti~aYGqTgSGKT~Tm 107 (459)
-+-++.++. |+. ..+.-||++|||||+.+
T Consensus 46 ~~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLa 78 (349)
T 2zr9_A 46 SISLDVALGIGGLPRGRVIEIYGPESSGKTTVA 78 (349)
T ss_dssp CHHHHHHTSSSSEETTSEEEEEESTTSSHHHHH
T ss_pred CHHHHHHhccCCccCCeEEEEECCCCCCHHHHH
Confidence 456777787 443 46888999999999764
No 349
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=37.55 E-value=11 Score=36.66 Aligned_cols=15 Identities=33% Similarity=0.414 Sum_probs=12.4
Q ss_pred EEEeecCCCCCccee
Q psy7270 92 CIFAYGQTGAGKSYT 106 (459)
Q Consensus 92 ti~aYGqTgSGKT~T 106 (459)
.|+-.|+||||||..
T Consensus 5 ~i~i~GptgsGKt~l 19 (322)
T 3exa_A 5 LVAIVGPTAVGKTKT 19 (322)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCcCCHHHH
Confidence 467789999999864
No 350
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=37.23 E-value=8.9 Score=36.05 Aligned_cols=27 Identities=22% Similarity=0.225 Sum_probs=19.5
Q ss_pred HHHHhhcCCc--eEEEeecCCCCCcceee
Q psy7270 81 MLEHAFEGYN--VCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 81 lv~~~l~G~n--~ti~aYGqTgSGKT~Tm 107 (459)
.++.+.-|+. ..+.-.|++|+|||..+
T Consensus 24 ~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~ 52 (296)
T 1cr0_A 24 GINDKTLGARGGEVIMVTSGSGMGKSTFV 52 (296)
T ss_dssp THHHHHCSBCTTCEEEEEESTTSSHHHHH
T ss_pred HHHHHhcCCCCCeEEEEEeCCCCCHHHHH
Confidence 3556665554 36777899999999865
No 351
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=37.11 E-value=9.2 Score=34.27 Aligned_cols=16 Identities=25% Similarity=0.468 Sum_probs=12.5
Q ss_pred EEEeecCCCCCcceee
Q psy7270 92 CIFAYGQTGAGKSYTM 107 (459)
Q Consensus 92 ti~aYGqTgSGKT~Tm 107 (459)
.|.-.|++|+|||..+
T Consensus 21 ~ivl~GPSGaGKsTL~ 36 (197)
T 3ney_A 21 TLVLIGASGVGRSHIK 36 (197)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECcCCCCHHHHH
Confidence 4556899999998654
No 352
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=37.07 E-value=10 Score=33.67 Aligned_cols=14 Identities=36% Similarity=0.570 Sum_probs=11.9
Q ss_pred EEeecCCCCCccee
Q psy7270 93 IFAYGQTGAGKSYT 106 (459)
Q Consensus 93 i~aYGqTgSGKT~T 106 (459)
|+-.|+.|||||+.
T Consensus 3 I~l~G~~GsGKsT~ 16 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQ 16 (216)
T ss_dssp EEEECSTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 56689999999875
No 353
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=37.00 E-value=10 Score=34.37 Aligned_cols=16 Identities=38% Similarity=0.482 Sum_probs=13.6
Q ss_pred eEEEeecCCCCCccee
Q psy7270 91 VCIFAYGQTGAGKSYT 106 (459)
Q Consensus 91 ~ti~aYGqTgSGKT~T 106 (459)
..|+-.|..|||||+.
T Consensus 17 ~~I~l~G~~GsGKsT~ 32 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQ 32 (233)
T ss_dssp CEEEEECCTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4578899999999975
No 354
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=36.99 E-value=2.3e+02 Score=29.59 Aligned_cols=13 Identities=15% Similarity=0.225 Sum_probs=6.2
Q ss_pred eecCCCCCcceee
Q psy7270 95 AYGQTGAGKSYTM 107 (459)
Q Consensus 95 aYGqTgSGKT~Tm 107 (459)
.+|.|.-|.|..+
T Consensus 66 ~~~~tt~~~T~gi 78 (592)
T 1f5n_A 66 SLGSTVQSHTKGI 78 (592)
T ss_dssp CCCCSSSCCCCSE
T ss_pred ccCCCCCCceeEE
Confidence 4555544444433
No 355
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=36.79 E-value=10 Score=33.46 Aligned_cols=13 Identities=38% Similarity=0.531 Sum_probs=11.4
Q ss_pred EEeecCCCCCcce
Q psy7270 93 IFAYGQTGAGKSY 105 (459)
Q Consensus 93 i~aYGqTgSGKT~ 105 (459)
++-+|.+|||||.
T Consensus 2 ilV~Gg~~SGKS~ 14 (180)
T 1c9k_A 2 ILVTGGARSGKSR 14 (180)
T ss_dssp EEEEECTTSSHHH
T ss_pred EEEECCCCCcHHH
Confidence 6889999999973
No 356
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=36.73 E-value=13 Score=32.63 Aligned_cols=19 Identities=32% Similarity=0.580 Sum_probs=15.0
Q ss_pred CCceEEEeecCCCCCccee
Q psy7270 88 GYNVCIFAYGQTGAGKSYT 106 (459)
Q Consensus 88 G~n~ti~aYGqTgSGKT~T 106 (459)
.....|+-.|..|||||+.
T Consensus 18 ~~~~~I~l~G~~GsGKST~ 36 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQ 36 (201)
T ss_dssp CSCCEEEEECCTTSSHHHH
T ss_pred CCCeEEEEECCCCCCHHHH
Confidence 3344688899999999975
No 357
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=36.07 E-value=3.6e+02 Score=27.35 Aligned_cols=19 Identities=11% Similarity=0.184 Sum_probs=10.7
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q psy7270 347 NAKLIRELKEEIQRLRDLL 365 (459)
Q Consensus 347 ~~~~i~~l~~ei~~L~~~l 365 (459)
..+.+..++.|+++.++.-
T Consensus 7 yq~~la~yq~elarvqkan 25 (497)
T 3iox_A 7 YQAKLTAYQTELARVQKAN 25 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444556666666665543
No 358
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=36.07 E-value=11 Score=32.77 Aligned_cols=15 Identities=47% Similarity=0.629 Sum_probs=12.3
Q ss_pred EEEeecCCCCCccee
Q psy7270 92 CIFAYGQTGAGKSYT 106 (459)
Q Consensus 92 ti~aYGqTgSGKT~T 106 (459)
.|.-.|..|||||+.
T Consensus 2 ~I~i~G~~GsGKsT~ 16 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTI 16 (205)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCccCHHHH
Confidence 366789999999874
No 359
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=36.01 E-value=20 Score=34.03 Aligned_cols=17 Identities=35% Similarity=0.302 Sum_probs=13.8
Q ss_pred eEEEeecCCCCCcceee
Q psy7270 91 VCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 91 ~ti~aYGqTgSGKT~Tm 107 (459)
-.|--.|++|||||+.+
T Consensus 81 ~iigI~G~~GsGKSTl~ 97 (308)
T 1sq5_A 81 YIISIAGSVAVGKSTTA 97 (308)
T ss_dssp EEEEEEECTTSSHHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 45666799999999875
No 360
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=35.92 E-value=11 Score=33.59 Aligned_cols=16 Identities=38% Similarity=0.536 Sum_probs=12.9
Q ss_pred EEEeecCCCCCcceee
Q psy7270 92 CIFAYGQTGAGKSYTM 107 (459)
Q Consensus 92 ti~aYGqTgSGKT~Tm 107 (459)
..+-||++|||||..|
T Consensus 25 ~~~I~G~NgsGKStil 40 (203)
T 3qks_A 25 INLIIGQNGSGKSSLL 40 (203)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEEcCCCCCHHHHH
Confidence 4467899999999765
No 361
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=35.91 E-value=25 Score=37.42 Aligned_cols=41 Identities=22% Similarity=0.285 Sum_probs=28.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhhcCCceEEEeecCCCCCcceeecc
Q psy7270 64 ASNFATQAMVYSDIGEEMLEHAFEGYNVCIFAYGQTGAGKSYTMMG 109 (459)
Q Consensus 64 ~~~~~sQ~~vy~~~~~plv~~~l~G~n~ti~aYGqTgSGKT~Tm~G 109 (459)
+.|...|..-+.. +++.+-.|... ....|.|||||||||-.
T Consensus 11 ~~p~~~Q~~~i~~----l~~~~~~~~~~-~~l~g~~gs~k~~~~a~ 51 (661)
T 2d7d_A 11 YQPQGDQPKAIEK----LVKGIQEGKKH-QTLLGATGTGKTFTVSN 51 (661)
T ss_dssp CCCCTTHHHHHHH----HHHHHHTTCSE-EEEEECTTSCHHHHHHH
T ss_pred CCCCCCCHHHHHH----HHHHHhcCCCc-EEEECcCCcHHHHHHHH
Confidence 3455788777654 45666667533 34569999999999853
No 362
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=35.76 E-value=11 Score=32.39 Aligned_cols=15 Identities=33% Similarity=0.379 Sum_probs=12.1
Q ss_pred EEEeecCCCCCccee
Q psy7270 92 CIFAYGQTGAGKSYT 106 (459)
Q Consensus 92 ti~aYGqTgSGKT~T 106 (459)
.|.-.|..|||||+-
T Consensus 2 ~I~l~G~~GsGKsT~ 16 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQ 16 (195)
T ss_dssp EEEEECSTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 367789999999863
No 363
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=35.48 E-value=12 Score=31.63 Aligned_cols=15 Identities=33% Similarity=0.437 Sum_probs=12.7
Q ss_pred EEEeecCCCCCccee
Q psy7270 92 CIFAYGQTGAGKSYT 106 (459)
Q Consensus 92 ti~aYGqTgSGKT~T 106 (459)
.|+-.|..|||||+.
T Consensus 9 ~i~l~G~~GsGKSTv 23 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSL 23 (168)
T ss_dssp EEEEESCTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 577889999999874
No 364
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=35.42 E-value=15 Score=39.35 Aligned_cols=17 Identities=29% Similarity=0.307 Sum_probs=13.8
Q ss_pred EEEeecCCCCCcceeec
Q psy7270 92 CIFAYGQTGAGKSYTMM 108 (459)
Q Consensus 92 ti~aYGqTgSGKT~Tm~ 108 (459)
.++..|+||||||+.+.
T Consensus 234 ~vlv~ApTGSGKT~a~~ 250 (666)
T 3o8b_A 234 VAHLHAPTGSGKSTKVP 250 (666)
T ss_dssp EEEEECCTTSCTTTHHH
T ss_pred eEEEEeCCchhHHHHHH
Confidence 46888999999997653
No 365
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=35.32 E-value=1.7e+02 Score=23.49 Aligned_cols=23 Identities=13% Similarity=0.583 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy7270 413 EMQQRLRDLEEQYKREKNEADQA 435 (459)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~e~~~~ 435 (459)
+.++++.++..+|+..-.+++.+
T Consensus 65 e~e~E~ae~k~KYD~~lqe~ese 87 (115)
T 3vem_A 65 ELERKMAEVQAEFRRKFHEVEAE 87 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444433333333
No 366
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=34.98 E-value=10 Score=36.40 Aligned_cols=17 Identities=35% Similarity=0.296 Sum_probs=13.8
Q ss_pred eEEEeecCCCCCcceee
Q psy7270 91 VCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 91 ~ti~aYGqTgSGKT~Tm 107 (459)
-.|.-.|++|||||+.+
T Consensus 91 ~ivgI~G~sGsGKSTL~ 107 (312)
T 3aez_A 91 FIIGVAGSVAVGKSTTA 107 (312)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred EEEEEECCCCchHHHHH
Confidence 45666799999999876
No 367
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=34.82 E-value=9.6 Score=41.78 Aligned_cols=17 Identities=35% Similarity=0.634 Sum_probs=14.5
Q ss_pred eEEEeecCCCCCcceee
Q psy7270 91 VCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 91 ~ti~aYGqTgSGKT~Tm 107 (459)
..|+-||++|||||+.+
T Consensus 239 ~~vLL~Gp~GtGKTtLa 255 (806)
T 1ypw_A 239 RGILLYGPPGTGKTLIA 255 (806)
T ss_dssp CEEEECSCTTSSHHHHH
T ss_pred CeEEEECcCCCCHHHHH
Confidence 46899999999999754
No 368
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=34.80 E-value=11 Score=32.84 Aligned_cols=17 Identities=41% Similarity=0.401 Sum_probs=13.7
Q ss_pred eEEEeecCCCCCcceee
Q psy7270 91 VCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 91 ~ti~aYGqTgSGKT~Tm 107 (459)
..|+-.|..|||||+..
T Consensus 5 ~~I~i~G~~GsGKsT~~ 21 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQA 21 (213)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEEcCCCCCHHHHH
Confidence 35788999999998753
No 369
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=34.79 E-value=11 Score=33.12 Aligned_cols=15 Identities=40% Similarity=0.388 Sum_probs=12.5
Q ss_pred EEEeecCCCCCccee
Q psy7270 92 CIFAYGQTGAGKSYT 106 (459)
Q Consensus 92 ti~aYGqTgSGKT~T 106 (459)
.|.-.|..|||||+.
T Consensus 3 ~i~i~G~~GsGKSTl 17 (204)
T 2if2_A 3 RIGLTGNIGCGKSTV 17 (204)
T ss_dssp EEEEEECTTSSHHHH
T ss_pred EEEEECCCCcCHHHH
Confidence 367789999999975
No 370
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=34.64 E-value=12 Score=37.89 Aligned_cols=16 Identities=38% Similarity=0.569 Sum_probs=14.3
Q ss_pred EEEeecCCCCCcceee
Q psy7270 92 CIFAYGQTGAGKSYTM 107 (459)
Q Consensus 92 ti~aYGqTgSGKT~Tm 107 (459)
.|...|++|+|||++.
T Consensus 101 vI~ivG~~GvGKTTla 116 (432)
T 2v3c_C 101 VILLVGIQGSGKTTTA 116 (432)
T ss_dssp CEEEECCSSSSTTHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 6778999999999987
No 371
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=34.53 E-value=12 Score=39.71 Aligned_cols=23 Identities=17% Similarity=0.001 Sum_probs=18.1
Q ss_pred HHHhhcCCceEEEeecCCCCCccee
Q psy7270 82 LEHAFEGYNVCIFAYGQTGAGKSYT 106 (459)
Q Consensus 82 v~~~l~G~n~ti~aYGqTgSGKT~T 106 (459)
+..++.|.+. +..++||||||..
T Consensus 180 i~~l~~g~dv--lv~a~TGSGKT~~ 202 (618)
T 2whx_A 180 EDIFRKKRLT--IMDLHPGAGKTKR 202 (618)
T ss_dssp GGGGSTTCEE--EECCCTTSSTTTT
T ss_pred HHHHhcCCeE--EEEcCCCCCHHHH
Confidence 5556677664 7789999999987
No 372
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=34.33 E-value=16 Score=35.82 Aligned_cols=29 Identities=24% Similarity=0.362 Sum_probs=22.4
Q ss_pred HHHHHHhhc--CCc--eEEEeecCCCCCcceee
Q psy7270 79 EEMLEHAFE--GYN--VCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 79 ~plv~~~l~--G~n--~ti~aYGqTgSGKT~Tm 107 (459)
-+-++.+|. |+. ..+.-||++|||||+.+
T Consensus 46 ~~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLa 78 (356)
T 3hr8_A 46 SLAIDIATGVGGYPRGRIVEIFGQESSGKTTLA 78 (356)
T ss_dssp CHHHHHHTSSSSEETTEEEEEEESTTSSHHHHH
T ss_pred CHHHHHHhccCCccCCcEEEEECCCCCCHHHHH
Confidence 466788887 554 57888999999999754
No 373
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=34.26 E-value=11 Score=33.66 Aligned_cols=16 Identities=19% Similarity=0.308 Sum_probs=13.1
Q ss_pred EEEeecCCCCCcceee
Q psy7270 92 CIFAYGQTGAGKSYTM 107 (459)
Q Consensus 92 ti~aYGqTgSGKT~Tm 107 (459)
.|+-.|..|||||+..
T Consensus 7 ~I~l~G~~GsGKsT~~ 22 (222)
T 1zak_A 7 KVMISGAPASGKGTQC 22 (222)
T ss_dssp CEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4778899999998743
No 374
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=34.04 E-value=22 Score=34.27 Aligned_cols=16 Identities=38% Similarity=0.279 Sum_probs=13.3
Q ss_pred EEEeecCCCCCcceee
Q psy7270 92 CIFAYGQTGAGKSYTM 107 (459)
Q Consensus 92 ti~aYGqTgSGKT~Tm 107 (459)
.|.--|++|||||+++
T Consensus 94 iigI~GpsGSGKSTl~ 109 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTS 109 (321)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5667799999999875
No 375
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=33.92 E-value=12 Score=33.07 Aligned_cols=15 Identities=40% Similarity=0.625 Sum_probs=11.9
Q ss_pred EEeecCCCCCcceee
Q psy7270 93 IFAYGQTGAGKSYTM 107 (459)
Q Consensus 93 i~aYGqTgSGKT~Tm 107 (459)
|.-.|++|+|||.-+
T Consensus 4 IVi~GPSG~GK~Tl~ 18 (186)
T 1ex7_A 4 IVISGPSGTGKSTLL 18 (186)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 567899999997643
No 376
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=33.77 E-value=14 Score=32.52 Aligned_cols=16 Identities=25% Similarity=0.304 Sum_probs=12.8
Q ss_pred EEEeecCCCCCcceee
Q psy7270 92 CIFAYGQTGAGKSYTM 107 (459)
Q Consensus 92 ti~aYGqTgSGKT~Tm 107 (459)
.|.-.|+.|||||+..
T Consensus 4 ~i~l~G~~GsGKST~~ 19 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIA 19 (206)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4667899999999754
No 377
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=33.77 E-value=13 Score=33.04 Aligned_cols=17 Identities=35% Similarity=0.382 Sum_probs=13.5
Q ss_pred eEEEeecCCCCCcceee
Q psy7270 91 VCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 91 ~ti~aYGqTgSGKT~Tm 107 (459)
..|.-.|++|||||+..
T Consensus 6 ~~i~i~G~~GsGKSTl~ 22 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLC 22 (227)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35777899999998753
No 378
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=33.71 E-value=13 Score=39.22 Aligned_cols=17 Identities=29% Similarity=0.460 Sum_probs=14.5
Q ss_pred EEEeecCCCCCcceeec
Q psy7270 92 CIFAYGQTGAGKSYTMM 108 (459)
Q Consensus 92 ti~aYGqTgSGKT~Tm~ 108 (459)
.|+-+|++|+|||...-
T Consensus 329 ~vLL~GppGtGKT~LAr 345 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQ 345 (595)
T ss_dssp CEEEEESSCCTHHHHHH
T ss_pred ceEEECCCchHHHHHHH
Confidence 58899999999998653
No 379
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=33.68 E-value=11 Score=32.30 Aligned_cols=19 Identities=26% Similarity=0.485 Sum_probs=15.3
Q ss_pred CceEEEeecCCCCCcceee
Q psy7270 89 YNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 89 ~n~ti~aYGqTgSGKT~Tm 107 (459)
....|+..|.+|+|||..+
T Consensus 47 ~~~~i~vvG~~g~GKSsll 65 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLL 65 (193)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 3457899999999998654
No 380
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=33.56 E-value=14 Score=36.16 Aligned_cols=17 Identities=29% Similarity=0.442 Sum_probs=13.0
Q ss_pred eEEEeecCCCCCcceee
Q psy7270 91 VCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 91 ~ti~aYGqTgSGKT~Tm 107 (459)
+..+-+|+||||||.-+
T Consensus 26 gl~vi~G~NGaGKT~il 42 (371)
T 3auy_A 26 GIVAIIGENGSGKSSIF 42 (371)
T ss_dssp EEEEEEECTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 34567899999998654
No 381
>4etp_B Spindle POLE BODY-associated protein VIK1; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=33.53 E-value=1.3e+02 Score=28.92 Aligned_cols=46 Identities=9% Similarity=0.113 Sum_probs=35.9
Q ss_pred CceeecceeecCCCCCCCCCCCHHHHHHHHHHHHHHHhh-cCCceEEEeecCC
Q psy7270 48 HKNFNFDYSYYSHDPSASNFATQAMVYSDIGEEMLEHAF-EGYNVCIFAYGQT 99 (459)
Q Consensus 48 ~~~f~FD~vf~~~d~~~~~~~sQ~~vy~~~~~plv~~~l-~G~n~ti~aYGqT 99 (459)
.+.|.|++++... ..+-.+++..-+++.++-++ .+.|+.|+.-|..
T Consensus 91 ~~~y~FnRiIp~~------~~~e~~~l~qE~q~y~DmcL~~~~NfslIsis~~ 137 (333)
T 4etp_B 91 EHVYKFNRVIPHL------KVSEDCFFTQEYSVYHDMALNQKKNFNLISLSTT 137 (333)
T ss_dssp CCEEECSEEEETT------TCCHHHHHHHTTHHHHHHHHHTTCCEEEEEEESS
T ss_pred cceEEEeeeechh------hcchHHHHHHHHHHHHHHHHccCCCeeEEEecCC
Confidence 5789999999654 13445555555699999999 8999999998864
No 382
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=33.48 E-value=12 Score=32.75 Aligned_cols=16 Identities=19% Similarity=0.250 Sum_probs=12.6
Q ss_pred EEEeecCCCCCcceee
Q psy7270 92 CIFAYGQTGAGKSYTM 107 (459)
Q Consensus 92 ti~aYGqTgSGKT~Tm 107 (459)
.+.-.|.+|||||..+
T Consensus 8 ~i~i~G~sGsGKTTl~ 23 (174)
T 1np6_A 8 LLAFAAWSGTGKTTLL 23 (174)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEEeCCCCCHHHHH
Confidence 3556799999998765
No 383
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=33.40 E-value=14 Score=36.17 Aligned_cols=15 Identities=40% Similarity=0.516 Sum_probs=11.8
Q ss_pred EEeecCCCCCcceee
Q psy7270 93 IFAYGQTGAGKSYTM 107 (459)
Q Consensus 93 i~aYGqTgSGKT~Tm 107 (459)
.+-+|++|||||.-+
T Consensus 26 ~~i~G~NGaGKTTll 40 (365)
T 3qf7_A 26 TVVEGPNGAGKSSLF 40 (365)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 345999999999654
No 384
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=32.90 E-value=12 Score=36.03 Aligned_cols=17 Identities=29% Similarity=0.469 Sum_probs=13.8
Q ss_pred eEEEeecCCCCCcceee
Q psy7270 91 VCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 91 ~ti~aYGqTgSGKT~Tm 107 (459)
-++.-+|++|||||+.+
T Consensus 127 e~vaIvGpsGsGKSTLl 143 (305)
T 2v9p_A 127 NCLAFIGPPNTGKSMLC 143 (305)
T ss_dssp SEEEEECSSSSSHHHHH
T ss_pred CEEEEECCCCCcHHHHH
Confidence 35677899999999764
No 385
>3fgh_A Transcription factor A, mitochondrial; HMG domain, mitochondrial transcription, activator, DNA- binding, mitochondrion, phosphoprotein; 1.35A {Homo sapiens}
Probab=32.72 E-value=55 Score=23.18 Aligned_cols=38 Identities=21% Similarity=0.322 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy7270 418 LRDLEEQYKREKNEADQAFEQQRKSSLRRISKQMKLSI 455 (459)
Q Consensus 418 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 455 (459)
.+.+.+.|...-.+...-++++.+.+.+++.++|+.|+
T Consensus 30 ~k~lg~~Wk~ls~~eK~~y~~~A~~~k~~Y~~e~~~y~ 67 (67)
T 3fgh_A 30 LKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWA 67 (67)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34556666666666677788999999999999999875
No 386
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=32.70 E-value=27 Score=33.88 Aligned_cols=30 Identities=23% Similarity=0.340 Sum_probs=21.7
Q ss_pred HHHHHHHhh--cCCceEEEeecCCCCCcceee
Q psy7270 78 GEEMLEHAF--EGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 78 ~~plv~~~l--~G~n~ti~aYGqTgSGKT~Tm 107 (459)
+..++..+. .+-...|...|.+|+|||.++
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~ 96 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAI 96 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHH
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHH
Confidence 445565555 455567888999999999765
No 387
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=32.69 E-value=12 Score=33.20 Aligned_cols=14 Identities=36% Similarity=0.423 Sum_probs=12.0
Q ss_pred EEeecCCCCCccee
Q psy7270 93 IFAYGQTGAGKSYT 106 (459)
Q Consensus 93 i~aYGqTgSGKT~T 106 (459)
|+-.|..|||||+-
T Consensus 3 I~l~G~~GsGKsT~ 16 (214)
T 1e4v_A 3 IILLGAPVAGKGTQ 16 (214)
T ss_dssp EEEEESTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 67789999999864
No 388
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=32.64 E-value=10 Score=31.12 Aligned_cols=16 Identities=31% Similarity=0.397 Sum_probs=13.2
Q ss_pred EEEeecCCCCCcceee
Q psy7270 92 CIFAYGQTGAGKSYTM 107 (459)
Q Consensus 92 ti~aYGqTgSGKT~Tm 107 (459)
.|+..|.+|+|||..+
T Consensus 5 ~i~v~G~~~~GKssl~ 20 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALT 20 (166)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788899999998653
No 389
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=32.54 E-value=20 Score=37.98 Aligned_cols=34 Identities=18% Similarity=0.172 Sum_probs=22.4
Q ss_pred CCHHHHHHHHHHHHHHHhhcCCceEEEeecCCCCCcceee
Q psy7270 68 ATQAMVYSDIGEEMLEHAFEGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 68 ~sQ~~vy~~~~~plv~~~l~G~n~ti~aYGqTgSGKT~Tm 107 (459)
..|.++-..+ .+.+.+|.+ +++-.+||||||.+.
T Consensus 6 ~~Q~~~~~~v----~~~l~~~~~--~~~~apTGtGKT~a~ 39 (620)
T 4a15_A 6 QYQVEAIDFL----RSSLQKSYG--VALESPTGSGKTIMA 39 (620)
T ss_dssp HHHHHHHHHH----HHHHHHSSE--EEEECCTTSCHHHHH
T ss_pred HHHHHHHHHH----HHHHHcCCC--EEEECCCCCCHHHHH
Confidence 3566665544 334446655 577789999999764
No 390
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=32.23 E-value=12 Score=34.07 Aligned_cols=15 Identities=33% Similarity=0.578 Sum_probs=11.9
Q ss_pred EEeecCCCCCcceee
Q psy7270 93 IFAYGQTGAGKSYTM 107 (459)
Q Consensus 93 i~aYGqTgSGKT~Tm 107 (459)
+.-.|++|||||..+
T Consensus 33 ~~iiG~nGsGKSTLl 47 (224)
T 2pcj_A 33 VSIIGASGSGKSTLL 47 (224)
T ss_dssp EEEEECTTSCHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 455699999999754
No 391
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=32.09 E-value=14 Score=31.97 Aligned_cols=15 Identities=40% Similarity=0.485 Sum_probs=12.2
Q ss_pred EEeecCCCCCcceee
Q psy7270 93 IFAYGQTGAGKSYTM 107 (459)
Q Consensus 93 i~aYGqTgSGKT~Tm 107 (459)
|.-.|..|||||+..
T Consensus 3 I~l~G~~GsGKsT~~ 17 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQI 17 (197)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 667899999998653
No 392
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=31.89 E-value=12 Score=34.34 Aligned_cols=16 Identities=44% Similarity=0.557 Sum_probs=12.6
Q ss_pred EEEeecCCCCCcceee
Q psy7270 92 CIFAYGQTGAGKSYTM 107 (459)
Q Consensus 92 ti~aYGqTgSGKT~Tm 107 (459)
.+.-.|++|||||..+
T Consensus 26 ~~~liG~nGsGKSTLl 41 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFL 41 (240)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3456799999999854
No 393
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=31.87 E-value=13 Score=33.25 Aligned_cols=15 Identities=27% Similarity=0.503 Sum_probs=12.6
Q ss_pred EEEeecCCCCCccee
Q psy7270 92 CIFAYGQTGAGKSYT 106 (459)
Q Consensus 92 ti~aYGqTgSGKT~T 106 (459)
.|+-.|..|||||+.
T Consensus 7 ~I~l~G~~GsGKsT~ 21 (217)
T 3be4_A 7 NLILIGAPGSGKGTQ 21 (217)
T ss_dssp EEEEEECTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 477789999999874
No 394
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=31.81 E-value=12 Score=34.97 Aligned_cols=17 Identities=29% Similarity=0.175 Sum_probs=14.0
Q ss_pred eEEEeecCCCCCcceee
Q psy7270 91 VCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 91 ~ti~aYGqTgSGKT~Tm 107 (459)
..+.-+|++|||||..+
T Consensus 31 ~i~~i~G~~GsGKTtl~ 47 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLA 47 (279)
T ss_dssp SEEEEEESTTSSHHHHH
T ss_pred CEEEEEcCCCCCHHHHH
Confidence 36778999999999764
No 395
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=31.56 E-value=16 Score=35.67 Aligned_cols=15 Identities=33% Similarity=0.412 Sum_probs=12.8
Q ss_pred EEEeecCCCCCccee
Q psy7270 92 CIFAYGQTGAGKSYT 106 (459)
Q Consensus 92 ti~aYGqTgSGKT~T 106 (459)
.|+-.|+||||||..
T Consensus 9 lI~I~GptgSGKTtl 23 (340)
T 3d3q_A 9 LIVIVGPTASGKTEL 23 (340)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred eEEEECCCcCcHHHH
Confidence 578889999999863
No 396
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=31.40 E-value=13 Score=35.09 Aligned_cols=15 Identities=33% Similarity=0.434 Sum_probs=12.0
Q ss_pred EEeecCCCCCcceee
Q psy7270 93 IFAYGQTGAGKSYTM 107 (459)
Q Consensus 93 i~aYGqTgSGKT~Tm 107 (459)
+.-.|++|||||..+
T Consensus 37 ~~iiGpnGsGKSTLl 51 (275)
T 3gfo_A 37 TAILGGNGVGKSTLF 51 (275)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 445799999999864
No 397
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=31.39 E-value=13 Score=34.07 Aligned_cols=16 Identities=38% Similarity=0.549 Sum_probs=12.7
Q ss_pred EEEeecCCCCCcceee
Q psy7270 92 CIFAYGQTGAGKSYTM 107 (459)
Q Consensus 92 ti~aYGqTgSGKT~Tm 107 (459)
.+.-.|++|||||..+
T Consensus 33 ~~~i~G~nGsGKSTLl 48 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLL 48 (237)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3566899999999854
No 398
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=31.34 E-value=14 Score=33.79 Aligned_cols=17 Identities=24% Similarity=0.339 Sum_probs=14.0
Q ss_pred ceEEEeecCCCCCccee
Q psy7270 90 NVCIFAYGQTGAGKSYT 106 (459)
Q Consensus 90 n~ti~aYGqTgSGKT~T 106 (459)
.-.|+-.|+.|||||+-
T Consensus 29 ~~~I~l~G~~GsGKsT~ 45 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQ 45 (243)
T ss_dssp CEEEEEECCTTSSHHHH
T ss_pred CcEEEEECCCCCCHHHH
Confidence 44688899999999864
No 399
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=31.18 E-value=17 Score=31.03 Aligned_cols=16 Identities=31% Similarity=0.555 Sum_probs=12.6
Q ss_pred EEEeecCCCCCcceee
Q psy7270 92 CIFAYGQTGAGKSYTM 107 (459)
Q Consensus 92 ti~aYGqTgSGKT~Tm 107 (459)
.|.-.|..|||||+..
T Consensus 7 ~i~l~G~~GsGKST~~ 22 (179)
T 2pez_A 7 TVWLTGLSGAGKTTVS 22 (179)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4667799999998753
No 400
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=31.13 E-value=12 Score=42.99 Aligned_cols=20 Identities=20% Similarity=0.350 Sum_probs=17.1
Q ss_pred ceEEEeecCCCCCcceeecc
Q psy7270 90 NVCIFAYGQTGAGKSYTMMG 109 (459)
Q Consensus 90 n~ti~aYGqTgSGKT~Tm~G 109 (459)
+..++..|..|||||++|..
T Consensus 23 ~~~~~v~a~AGSGKT~vl~~ 42 (1232)
T 3u4q_A 23 GQDILVAAAAGSGKTAVLVE 42 (1232)
T ss_dssp SSCEEEEECTTCCHHHHHHH
T ss_pred CCCEEEEecCCCcHHHHHHH
Confidence 66788889999999999854
No 401
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=31.08 E-value=15 Score=33.07 Aligned_cols=14 Identities=36% Similarity=0.790 Sum_probs=12.1
Q ss_pred EEeecCCCCCccee
Q psy7270 93 IFAYGQTGAGKSYT 106 (459)
Q Consensus 93 i~aYGqTgSGKT~T 106 (459)
|+-.|..|||||+.
T Consensus 3 I~l~G~~GsGKsT~ 16 (223)
T 2xb4_A 3 ILIFGPNGSGKGTQ 16 (223)
T ss_dssp EEEECCTTSCHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 67789999999874
No 402
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=31.08 E-value=23 Score=34.74 Aligned_cols=29 Identities=24% Similarity=0.326 Sum_probs=21.5
Q ss_pred HHHHHHhhc--CCc--eEEEeecCCCCCcceee
Q psy7270 79 EEMLEHAFE--GYN--VCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 79 ~plv~~~l~--G~n--~ti~aYGqTgSGKT~Tm 107 (459)
-+-++.++. |+. ..++-||++|+|||+..
T Consensus 48 ~~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLa 80 (356)
T 1u94_A 48 SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLT 80 (356)
T ss_dssp CHHHHHHTSSSSEETTSEEEEECSTTSSHHHHH
T ss_pred CHHHHHHhccCCccCCeEEEEECCCCCCHHHHH
Confidence 456777775 443 46788999999999764
No 403
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=31.02 E-value=27 Score=36.09 Aligned_cols=34 Identities=18% Similarity=0.219 Sum_probs=22.1
Q ss_pred CCHHHHHHHHHHHHHHHhhcCCceEEEeecCCCCCcceee
Q psy7270 68 ATQAMVYSDIGEEMLEHAFEGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 68 ~sQ~~vy~~~~~plv~~~l~G~n~ti~aYGqTgSGKT~Tm 107 (459)
.-|.++-..+ ...+..|.++ ++-.+||||||.+.
T Consensus 10 ~~Q~~~~~~v----~~~~~~~~~~--~~~a~TGtGKT~~~ 43 (540)
T 2vl7_A 10 QWQAEKLGEA----INALKHGKTL--LLNAKPGLGKTVFV 43 (540)
T ss_dssp CHHHHHHHHH----HHHHHTTCEE--EEECCTTSCHHHHH
T ss_pred HHHHHHHHHH----HHHHHcCCCE--EEEcCCCCcHHHHH
Confidence 4566655443 4455677654 55668999999764
No 404
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=31.00 E-value=13 Score=34.05 Aligned_cols=15 Identities=40% Similarity=0.658 Sum_probs=12.2
Q ss_pred EEeecCCCCCcceee
Q psy7270 93 IFAYGQTGAGKSYTM 107 (459)
Q Consensus 93 i~aYGqTgSGKT~Tm 107 (459)
+.-.|++|||||+.+
T Consensus 35 ~~l~G~nGsGKSTLl 49 (240)
T 1ji0_A 35 VTLIGANGAGKTTTL 49 (240)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 456799999999864
No 405
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=30.99 E-value=15 Score=34.35 Aligned_cols=16 Identities=38% Similarity=0.453 Sum_probs=13.5
Q ss_pred eEEEeecCCCCCccee
Q psy7270 91 VCIFAYGQTGAGKSYT 106 (459)
Q Consensus 91 ~ti~aYGqTgSGKT~T 106 (459)
..|+-.|.+|||||+.
T Consensus 3 ~~I~l~G~~GsGKST~ 18 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTW 18 (301)
T ss_dssp EEEEEECCTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 3588899999999974
No 406
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=30.88 E-value=12 Score=33.76 Aligned_cols=15 Identities=27% Similarity=0.426 Sum_probs=11.9
Q ss_pred EEeecCCCCCcceee
Q psy7270 93 IFAYGQTGAGKSYTM 107 (459)
Q Consensus 93 i~aYGqTgSGKT~Tm 107 (459)
+.-.|+.|||||..|
T Consensus 38 ~~iiG~NGsGKSTLl 52 (214)
T 1sgw_A 38 VNFHGPNGIGKTTLL 52 (214)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 345799999999865
No 407
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=30.76 E-value=15 Score=32.33 Aligned_cols=16 Identities=31% Similarity=0.241 Sum_probs=12.7
Q ss_pred EEEeecCCCCCcceee
Q psy7270 92 CIFAYGQTGAGKSYTM 107 (459)
Q Consensus 92 ti~aYGqTgSGKT~Tm 107 (459)
.|.-.|.+|||||+..
T Consensus 23 ~i~i~G~~GsGKSTl~ 38 (207)
T 2qt1_A 23 IIGISGVTNSGKTTLA 38 (207)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4667799999999754
No 408
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=30.70 E-value=13 Score=34.39 Aligned_cols=15 Identities=33% Similarity=0.574 Sum_probs=12.1
Q ss_pred EEeecCCCCCcceee
Q psy7270 93 IFAYGQTGAGKSYTM 107 (459)
Q Consensus 93 i~aYGqTgSGKT~Tm 107 (459)
+.-.|++|||||..+
T Consensus 36 ~~liG~nGsGKSTLl 50 (257)
T 1g6h_A 36 TLIIGPNGSGKSTLI 50 (257)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 456799999999864
No 409
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=30.65 E-value=12 Score=36.73 Aligned_cols=15 Identities=33% Similarity=0.760 Sum_probs=12.2
Q ss_pred EEeecCCCCCcceee
Q psy7270 93 IFAYGQTGAGKSYTM 107 (459)
Q Consensus 93 i~aYGqTgSGKT~Tm 107 (459)
+.-.|++|||||.+|
T Consensus 33 ~~llGpsGsGKSTLL 47 (359)
T 3fvq_A 33 LFIIGASGCGKTTLL 47 (359)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCchHHHHH
Confidence 455799999999864
No 410
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=30.60 E-value=13 Score=36.47 Aligned_cols=15 Identities=33% Similarity=0.651 Sum_probs=12.3
Q ss_pred EEeecCCCCCcceee
Q psy7270 93 IFAYGQTGAGKSYTM 107 (459)
Q Consensus 93 i~aYGqTgSGKT~Tm 107 (459)
+.-.|++|||||..|
T Consensus 32 ~~llGpnGsGKSTLL 46 (359)
T 2yyz_A 32 VALLGPSGCGKTTTL 46 (359)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEEcCCCchHHHHH
Confidence 445699999999875
No 411
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=30.21 E-value=14 Score=36.77 Aligned_cols=15 Identities=33% Similarity=0.587 Sum_probs=12.3
Q ss_pred EEeecCCCCCcceee
Q psy7270 93 IFAYGQTGAGKSYTM 107 (459)
Q Consensus 93 i~aYGqTgSGKT~Tm 107 (459)
+--.|++|||||.+|
T Consensus 32 ~~llGpsGsGKSTLL 46 (381)
T 3rlf_A 32 VVFVGPSGCGKSTLL 46 (381)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEEcCCCchHHHHH
Confidence 455799999999864
No 412
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=30.21 E-value=14 Score=34.52 Aligned_cols=16 Identities=44% Similarity=0.902 Sum_probs=12.5
Q ss_pred EEEeecCCCCCcceee
Q psy7270 92 CIFAYGQTGAGKSYTM 107 (459)
Q Consensus 92 ti~aYGqTgSGKT~Tm 107 (459)
.+.-.|++|||||+.+
T Consensus 35 ~~~liG~nGsGKSTLl 50 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLL 50 (266)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 3456799999999754
No 413
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=30.11 E-value=17 Score=32.12 Aligned_cols=17 Identities=35% Similarity=0.483 Sum_probs=13.8
Q ss_pred ceEEEeecCCCCCccee
Q psy7270 90 NVCIFAYGQTGAGKSYT 106 (459)
Q Consensus 90 n~ti~aYGqTgSGKT~T 106 (459)
+..|.-.|..|||||+.
T Consensus 12 ~~iIgltG~~GSGKSTv 28 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTV 28 (192)
T ss_dssp EEEEEEECSTTSSHHHH
T ss_pred ceEEEEECCCCCCHHHH
Confidence 45677889999999864
No 414
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=30.00 E-value=14 Score=34.08 Aligned_cols=15 Identities=40% Similarity=0.499 Sum_probs=12.1
Q ss_pred EEeecCCCCCcceee
Q psy7270 93 IFAYGQTGAGKSYTM 107 (459)
Q Consensus 93 i~aYGqTgSGKT~Tm 107 (459)
+.-.|++|||||..|
T Consensus 38 ~~i~G~nGsGKSTLl 52 (247)
T 2ff7_A 38 IGIVGRSGSGKSTLT 52 (247)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 456799999999854
No 415
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=30.00 E-value=14 Score=34.44 Aligned_cols=15 Identities=40% Similarity=0.587 Sum_probs=11.9
Q ss_pred EEeecCCCCCcceee
Q psy7270 93 IFAYGQTGAGKSYTM 107 (459)
Q Consensus 93 i~aYGqTgSGKT~Tm 107 (459)
+.-.|++|||||..+
T Consensus 35 ~~liG~nGsGKSTLl 49 (262)
T 1b0u_A 35 ISIIGSSGSGKSTFL 49 (262)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 445699999999854
No 416
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=29.99 E-value=23 Score=35.74 Aligned_cols=20 Identities=25% Similarity=0.509 Sum_probs=14.0
Q ss_pred cCCceEEEeecCCCCCcceeec
Q psy7270 87 EGYNVCIFAYGQTGAGKSYTMM 108 (459)
Q Consensus 87 ~G~n~ti~aYGqTgSGKT~Tm~ 108 (459)
.|.+ +|+| -+||+|||.++.
T Consensus 55 ~~~~-~ila-d~~GlGKT~~ai 74 (500)
T 1z63_A 55 LGFG-ICLA-DDMGLGKTLQTI 74 (500)
T ss_dssp TTCC-EEEC-CCTTSCHHHHHH
T ss_pred CCCC-EEEE-eCCCCcHHHHHH
Confidence 4554 4444 699999999863
No 417
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=29.97 E-value=4.2e+02 Score=26.28 Aligned_cols=10 Identities=10% Similarity=0.371 Sum_probs=5.0
Q ss_pred ceeeeccCCC
Q psy7270 225 KISLVDLAGS 234 (459)
Q Consensus 225 ~L~~VDLAGs 234 (459)
.|..+||.+.
T Consensus 215 ~L~~L~Ls~N 224 (487)
T 3oja_A 215 GVTWISLRNN 224 (487)
T ss_dssp TCSEEECTTS
T ss_pred CccEEEecCC
Confidence 4555555543
No 418
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=29.91 E-value=13 Score=40.83 Aligned_cols=44 Identities=16% Similarity=0.264 Sum_probs=28.1
Q ss_pred eEEEeecCCCCCcceee------cc--------CCCCCCCCChHHHHHHHHHHHHhhc
Q psy7270 91 VCIFAYGQTGAGKSYTM------MG--------RQEVEGEEGIIPMICQDLFKRIKDT 134 (459)
Q Consensus 91 ~ti~aYGqTgSGKT~Tm------~G--------~~~~~~~~Giipr~~~~lF~~i~~~ 134 (459)
..|+-||+.|+|||+.- .| +.-.....|--...+..+|......
T Consensus 512 ~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~vGese~~vr~lF~~Ar~~ 569 (806)
T 3cf2_A 512 KGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQA 569 (806)
T ss_dssp SCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTTTCSSCHHHHHHHHHHHHTT
T ss_pred ceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhccccchHHHHHHHHHHHHHHc
Confidence 35889999999999643 11 0000113455567888999887654
No 419
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=29.88 E-value=17 Score=32.22 Aligned_cols=16 Identities=31% Similarity=0.383 Sum_probs=13.2
Q ss_pred eEEEeecCCCCCccee
Q psy7270 91 VCIFAYGQTGAGKSYT 106 (459)
Q Consensus 91 ~ti~aYGqTgSGKT~T 106 (459)
-.|.-.|..|||||+.
T Consensus 5 ~~I~i~G~~GSGKST~ 20 (218)
T 1vht_A 5 YIVALTGGIGSGKSTV 20 (218)
T ss_dssp EEEEEECCTTSCHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4577889999999874
No 420
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=29.87 E-value=14 Score=36.28 Aligned_cols=15 Identities=27% Similarity=0.532 Sum_probs=12.3
Q ss_pred EEeecCCCCCcceee
Q psy7270 93 IFAYGQTGAGKSYTM 107 (459)
Q Consensus 93 i~aYGqTgSGKT~Tm 107 (459)
+.-.|++|||||..|
T Consensus 44 ~~llGpnGsGKSTLL 58 (355)
T 1z47_A 44 VGLLGPSGSGKTTIL 58 (355)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCcHHHHH
Confidence 455799999999865
No 421
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=29.77 E-value=14 Score=34.33 Aligned_cols=16 Identities=38% Similarity=0.430 Sum_probs=12.8
Q ss_pred EEEeecCCCCCcceee
Q psy7270 92 CIFAYGQTGAGKSYTM 107 (459)
Q Consensus 92 ti~aYGqTgSGKT~Tm 107 (459)
.+.-.|++|||||..+
T Consensus 48 ~~~i~G~nGsGKSTLl 63 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIA 63 (260)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4567799999999854
No 422
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=29.76 E-value=16 Score=33.59 Aligned_cols=16 Identities=38% Similarity=0.464 Sum_probs=12.6
Q ss_pred EEEeecCCCCCcceee
Q psy7270 92 CIFAYGQTGAGKSYTM 107 (459)
Q Consensus 92 ti~aYGqTgSGKT~Tm 107 (459)
.+.-.|++|||||..+
T Consensus 30 ~~~i~G~nGsGKSTLl 45 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIF 45 (243)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3556799999999854
No 423
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=29.67 E-value=2.7e+02 Score=28.03 Aligned_cols=14 Identities=7% Similarity=0.347 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHH
Q psy7270 349 KLIRELKEEIQRLR 362 (459)
Q Consensus 349 ~~i~~l~~ei~~L~ 362 (459)
..|.+|+..+..+.
T Consensus 65 ~rI~kLkn~L~~~s 78 (491)
T 1m1j_A 65 QRIDNIRQQLADSQ 78 (491)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34566666665554
No 424
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=29.66 E-value=15 Score=32.25 Aligned_cols=17 Identities=29% Similarity=0.206 Sum_probs=13.8
Q ss_pred eEEEeecCCCCCcceee
Q psy7270 91 VCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 91 ~ti~aYGqTgSGKT~Tm 107 (459)
..|+-.|..|||||+..
T Consensus 11 ~~I~l~G~~GsGKST~~ 27 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQS 27 (212)
T ss_dssp CEEEEEESTTSSHHHHH
T ss_pred CEEEEEcCCCCCHHHHH
Confidence 35888999999998753
No 425
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=29.61 E-value=19 Score=31.84 Aligned_cols=17 Identities=29% Similarity=0.433 Sum_probs=13.6
Q ss_pred eEEEeecCCCCCcceee
Q psy7270 91 VCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 91 ~ti~aYGqTgSGKT~Tm 107 (459)
..|+-.|..|||||+.+
T Consensus 26 ~~i~~~G~~GsGKsT~~ 42 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTLA 42 (211)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 45677899999998754
No 426
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=29.35 E-value=15 Score=33.55 Aligned_cols=16 Identities=38% Similarity=0.301 Sum_probs=12.7
Q ss_pred EEEeecCCCCCcceee
Q psy7270 92 CIFAYGQTGAGKSYTM 107 (459)
Q Consensus 92 ti~aYGqTgSGKT~Tm 107 (459)
.|--.|+.|||||+.+
T Consensus 27 iigI~G~~GsGKSTl~ 42 (245)
T 2jeo_A 27 LIGVSGGTASGKSTVC 42 (245)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3555699999999875
No 427
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=29.35 E-value=14 Score=36.29 Aligned_cols=15 Identities=33% Similarity=0.583 Sum_probs=12.3
Q ss_pred EEeecCCCCCcceee
Q psy7270 93 IFAYGQTGAGKSYTM 107 (459)
Q Consensus 93 i~aYGqTgSGKT~Tm 107 (459)
+.-.|++|||||..|
T Consensus 32 ~~llGpnGsGKSTLL 46 (362)
T 2it1_A 32 MALLGPSGSGKSTLL 46 (362)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCchHHHHH
Confidence 455699999999865
No 428
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=29.28 E-value=15 Score=36.38 Aligned_cols=15 Identities=33% Similarity=0.711 Sum_probs=12.3
Q ss_pred EEeecCCCCCcceee
Q psy7270 93 IFAYGQTGAGKSYTM 107 (459)
Q Consensus 93 i~aYGqTgSGKT~Tm 107 (459)
+.-.|++|||||..|
T Consensus 32 ~~llGpnGsGKSTLL 46 (372)
T 1g29_1 32 MILLGPSGCGKTTTL 46 (372)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCcHHHHHH
Confidence 456799999999865
No 429
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=29.19 E-value=19 Score=32.25 Aligned_cols=25 Identities=28% Similarity=0.595 Sum_probs=17.9
Q ss_pred HHHhhc-CC--ceEEEeecCCCCCccee
Q psy7270 82 LEHAFE-GY--NVCIFAYGQTGAGKSYT 106 (459)
Q Consensus 82 v~~~l~-G~--n~ti~aYGqTgSGKT~T 106 (459)
+|.++. |+ ...++-+|.+|+|||.-
T Consensus 19 LD~~l~GGl~~G~l~~i~G~pG~GKT~l 46 (251)
T 2zts_A 19 FDELIEGGFPEGTTVLLTGGTGTGKTTF 46 (251)
T ss_dssp TGGGTTTSEETTCEEEEECCTTSSHHHH
T ss_pred HHHhhcCCCCCCeEEEEEeCCCCCHHHH
Confidence 455665 44 34678899999999953
No 430
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=29.15 E-value=15 Score=34.36 Aligned_cols=15 Identities=40% Similarity=0.596 Sum_probs=12.0
Q ss_pred EEeecCCCCCcceee
Q psy7270 93 IFAYGQTGAGKSYTM 107 (459)
Q Consensus 93 i~aYGqTgSGKT~Tm 107 (459)
+--.|++|||||..+
T Consensus 40 ~~liG~nGsGKSTLl 54 (266)
T 4g1u_C 40 VAIIGPNGAGKSTLL 54 (266)
T ss_dssp EEEECCTTSCHHHHH
T ss_pred EEEECCCCCcHHHHH
Confidence 345799999999864
No 431
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=28.93 E-value=15 Score=34.35 Aligned_cols=16 Identities=31% Similarity=0.603 Sum_probs=12.5
Q ss_pred EEEeecCCCCCcceee
Q psy7270 92 CIFAYGQTGAGKSYTM 107 (459)
Q Consensus 92 ti~aYGqTgSGKT~Tm 107 (459)
.+.-.|++|||||..+
T Consensus 52 i~~liG~NGsGKSTLl 67 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFL 67 (263)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEEcCCCCcHHHHH
Confidence 3456799999999864
No 432
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=28.81 E-value=17 Score=31.66 Aligned_cols=16 Identities=25% Similarity=0.233 Sum_probs=13.1
Q ss_pred EEEeecCCCCCcceee
Q psy7270 92 CIFAYGQTGAGKSYTM 107 (459)
Q Consensus 92 ti~aYGqTgSGKT~Tm 107 (459)
.|+-.|..|||||+..
T Consensus 6 ~I~l~G~~GsGKsT~~ 21 (204)
T 2v54_A 6 LIVFEGLDKSGKTTQC 21 (204)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 4777899999998753
No 433
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=28.77 E-value=17 Score=31.96 Aligned_cols=21 Identities=24% Similarity=0.464 Sum_probs=16.1
Q ss_pred cCCceEEEeecCCCCCcceee
Q psy7270 87 EGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 87 ~G~n~ti~aYGqTgSGKT~Tm 107 (459)
.+....|+..|.+|+|||..+
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~ 29 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLL 29 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHH
Confidence 344567899999999998654
No 434
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=28.73 E-value=26 Score=30.82 Aligned_cols=19 Identities=26% Similarity=0.447 Sum_probs=14.0
Q ss_pred CceEEEeecCCCCCcceee
Q psy7270 89 YNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 89 ~n~ti~aYGqTgSGKT~Tm 107 (459)
.-..|.-.|.+|+|||..+
T Consensus 29 ~~~~i~i~G~~g~GKTTl~ 47 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLI 47 (221)
T ss_dssp TCEEEEEEECTTSCHHHHH
T ss_pred CceEEEEEcCCCCCHHHHH
Confidence 3445666799999998654
No 435
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=28.67 E-value=17 Score=35.78 Aligned_cols=16 Identities=38% Similarity=0.634 Sum_probs=13.8
Q ss_pred EEEeecCCCCCcceee
Q psy7270 92 CIFAYGQTGAGKSYTM 107 (459)
Q Consensus 92 ti~aYGqTgSGKT~Tm 107 (459)
...-+|++|||||..+
T Consensus 28 ~~~i~G~nG~GKttll 43 (359)
T 2o5v_A 28 VTGIYGENGAGKTNLL 43 (359)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCChhHHH
Confidence 5677899999999877
No 436
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=28.51 E-value=15 Score=34.09 Aligned_cols=15 Identities=40% Similarity=0.545 Sum_probs=12.1
Q ss_pred EEeecCCCCCcceee
Q psy7270 93 IFAYGQTGAGKSYTM 107 (459)
Q Consensus 93 i~aYGqTgSGKT~Tm 107 (459)
+.-.|++|||||..|
T Consensus 44 ~~l~G~NGsGKSTLl 58 (256)
T 1vpl_A 44 FGLIGPNGAGKTTTL 58 (256)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 456699999999854
No 437
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=28.45 E-value=19 Score=29.53 Aligned_cols=16 Identities=25% Similarity=0.368 Sum_probs=12.8
Q ss_pred EEEeecCCCCCcceee
Q psy7270 92 CIFAYGQTGAGKSYTM 107 (459)
Q Consensus 92 ti~aYGqTgSGKT~Tm 107 (459)
.|+..|.+|+|||..+
T Consensus 3 ki~v~G~~~~GKSsli 18 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLF 18 (161)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4677899999998644
No 438
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=28.33 E-value=16 Score=33.29 Aligned_cols=15 Identities=40% Similarity=0.614 Sum_probs=12.0
Q ss_pred EEeecCCCCCcceee
Q psy7270 93 IFAYGQTGAGKSYTM 107 (459)
Q Consensus 93 i~aYGqTgSGKT~Tm 107 (459)
+.-.|++|||||..|
T Consensus 37 ~~i~G~nGsGKSTLl 51 (229)
T 2pze_A 37 LAVAGSTGAGKTSLL 51 (229)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 456799999999754
No 439
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=28.32 E-value=20 Score=40.04 Aligned_cols=26 Identities=12% Similarity=0.080 Sum_probs=19.0
Q ss_pred HHHhhcCCceEEEeecCCCCCcceee
Q psy7270 82 LEHAFEGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 82 v~~~l~G~n~ti~aYGqTgSGKT~Tm 107 (459)
|..++...+..++..++||+|||.+.
T Consensus 162 v~~~l~~~~~~~LLad~tGlGKTi~A 187 (968)
T 3dmq_A 162 AHDVGRRHAPRVLLADEVGLGKTIEA 187 (968)
T ss_dssp HHHHHHSSSCEEEECCCTTSCHHHHH
T ss_pred HHHHHHhcCCCEEEECCCCCcHHHHH
Confidence 44555555555677799999999875
No 440
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=28.28 E-value=15 Score=36.22 Aligned_cols=15 Identities=33% Similarity=0.698 Sum_probs=12.3
Q ss_pred EEeecCCCCCcceee
Q psy7270 93 IFAYGQTGAGKSYTM 107 (459)
Q Consensus 93 i~aYGqTgSGKT~Tm 107 (459)
+.-.|++|||||..|
T Consensus 40 ~~llGpnGsGKSTLL 54 (372)
T 1v43_A 40 LVLLGPSGCGKTTTL 54 (372)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCChHHHHH
Confidence 456799999999865
No 441
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=28.22 E-value=17 Score=35.08 Aligned_cols=15 Identities=40% Similarity=0.596 Sum_probs=12.4
Q ss_pred EEeecCCCCCcceee
Q psy7270 93 IFAYGQTGAGKSYTM 107 (459)
Q Consensus 93 i~aYGqTgSGKT~Tm 107 (459)
.+-+|++|||||..|
T Consensus 26 ~~i~G~NGsGKS~ll 40 (339)
T 3qkt_A 26 NLIIGQNGSGKSSLL 40 (339)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 357899999999876
No 442
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=28.21 E-value=31 Score=32.85 Aligned_cols=28 Identities=18% Similarity=0.227 Sum_probs=21.4
Q ss_pred HHHHHHhhcCCce--EEEeecCCCCCccee
Q psy7270 79 EEMLEHAFEGYNV--CIFAYGQTGAGKSYT 106 (459)
Q Consensus 79 ~plv~~~l~G~n~--ti~aYGqTgSGKT~T 106 (459)
-+-++.++.|+.. .++-.|.+|+|||.-
T Consensus 55 ~~~LD~~lgGl~~G~l~li~G~pG~GKTtl 84 (315)
T 3bh0_A 55 FTELDRMTYGYKRRNFVLIAARPSMGKTAF 84 (315)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSSHHHH
T ss_pred hHHHHhhcCCCCCCcEEEEEeCCCCCHHHH
Confidence 3557788877763 678889999999954
No 443
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=28.14 E-value=16 Score=33.91 Aligned_cols=15 Identities=40% Similarity=0.647 Sum_probs=12.0
Q ss_pred EEeecCCCCCcceee
Q psy7270 93 IFAYGQTGAGKSYTM 107 (459)
Q Consensus 93 i~aYGqTgSGKT~Tm 107 (459)
+.-.|++|||||..|
T Consensus 34 ~~l~G~nGsGKSTLl 48 (253)
T 2nq2_C 34 LAVLGQNGCGKSTLL 48 (253)
T ss_dssp EEEECCSSSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 456799999999754
No 444
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=27.92 E-value=99 Score=18.35 Aligned_cols=17 Identities=35% Similarity=0.505 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHh
Q psy7270 351 IRELKEEIQRLRDLLKQ 367 (459)
Q Consensus 351 i~~l~~ei~~L~~~l~~ 367 (459)
|..|++||..|++++..
T Consensus 4 iaalkqeiaalkkeiaa 20 (33)
T 4dzn_A 4 IAALKQEIAALKKEIAA 20 (33)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44566677777666644
No 445
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=27.90 E-value=22 Score=34.98 Aligned_cols=30 Identities=27% Similarity=0.335 Sum_probs=21.5
Q ss_pred HHHHHHHhhc--CCc--eEEEeecCCCCCcceee
Q psy7270 78 GEEMLEHAFE--GYN--VCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 78 ~~plv~~~l~--G~n--~ti~aYGqTgSGKT~Tm 107 (459)
+-+-++.++. |+. ..++-||++|+|||+..
T Consensus 58 G~~~LD~~Lg~GGl~~G~li~I~G~pGsGKTtla 91 (366)
T 1xp8_A 58 GSLSLDLALGVGGIPRGRITEIYGPESGGKTTLA 91 (366)
T ss_dssp SCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHH
T ss_pred CCHHHHHHhCCCCccCCcEEEEEcCCCCChHHHH
Confidence 3456778886 553 35666999999999754
No 446
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=27.84 E-value=22 Score=35.51 Aligned_cols=30 Identities=20% Similarity=0.244 Sum_probs=22.2
Q ss_pred HHHHHHhhc-CCc--eEEEeecCCCCCcceeec
Q psy7270 79 EEMLEHAFE-GYN--VCIFAYGQTGAGKSYTMM 108 (459)
Q Consensus 79 ~plv~~~l~-G~n--~ti~aYGqTgSGKT~Tm~ 108 (459)
-+-++.+|. |+. ..+.-+|++|||||..+.
T Consensus 164 ~~~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~ 196 (400)
T 3lda_A 164 SKNLDTLLGGGVETGSITELFGEFRTGKSQLCH 196 (400)
T ss_dssp CHHHHHHTTTSEETTSEEEEEESTTSSHHHHHH
T ss_pred ChhHHHHhcCCcCCCcEEEEEcCCCCChHHHHH
Confidence 356778784 443 468889999999997653
No 447
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=27.70 E-value=16 Score=34.09 Aligned_cols=16 Identities=31% Similarity=0.345 Sum_probs=12.6
Q ss_pred EEEeecCCCCCcceee
Q psy7270 92 CIFAYGQTGAGKSYTM 107 (459)
Q Consensus 92 ti~aYGqTgSGKT~Tm 107 (459)
.+.-.|++|||||..+
T Consensus 48 ~~~l~G~NGsGKSTLl 63 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLS 63 (267)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3556799999999854
No 448
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=27.50 E-value=16 Score=34.37 Aligned_cols=15 Identities=40% Similarity=0.694 Sum_probs=12.1
Q ss_pred EEeecCCCCCcceee
Q psy7270 93 IFAYGQTGAGKSYTM 107 (459)
Q Consensus 93 i~aYGqTgSGKT~Tm 107 (459)
+.-.|++|||||..|
T Consensus 50 ~~liG~NGsGKSTLl 64 (279)
T 2ihy_A 50 WILYGLNGAGKTTLL 64 (279)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCcHHHHH
Confidence 456799999999854
No 449
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=27.47 E-value=16 Score=34.05 Aligned_cols=16 Identities=25% Similarity=0.542 Sum_probs=12.8
Q ss_pred EEEeecCCCCCcceee
Q psy7270 92 CIFAYGQTGAGKSYTM 107 (459)
Q Consensus 92 ti~aYGqTgSGKT~Tm 107 (459)
.+.-.|++|||||+.|
T Consensus 32 ~~~i~G~NGsGKSTLl 47 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLL 47 (263)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4566799999999864
No 450
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=27.42 E-value=17 Score=33.59 Aligned_cols=15 Identities=40% Similarity=0.341 Sum_probs=12.2
Q ss_pred EEeecCCCCCcceee
Q psy7270 93 IFAYGQTGAGKSYTM 107 (459)
Q Consensus 93 i~aYGqTgSGKT~Tm 107 (459)
+.-.|++|||||+.+
T Consensus 32 ~~l~G~nGsGKSTLl 46 (250)
T 2d2e_A 32 HALMGPNGAGKSTLG 46 (250)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 456799999999754
No 451
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=27.34 E-value=16 Score=31.67 Aligned_cols=18 Identities=28% Similarity=0.434 Sum_probs=14.4
Q ss_pred ceEEEeecCCCCCcceee
Q psy7270 90 NVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 90 n~ti~aYGqTgSGKT~Tm 107 (459)
...|.-.|..|+|||..+
T Consensus 5 ~~kv~lvG~~g~GKSTLl 22 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLL 22 (199)
T ss_dssp EEEEEEESSTTSSHHHHH
T ss_pred eEEEEEECcCCCCHHHHH
Confidence 346788899999999654
No 452
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=27.30 E-value=17 Score=33.69 Aligned_cols=15 Identities=40% Similarity=0.620 Sum_probs=12.2
Q ss_pred EEeecCCCCCcceee
Q psy7270 93 IFAYGQTGAGKSYTM 107 (459)
Q Consensus 93 i~aYGqTgSGKT~Tm 107 (459)
+.-.|++|||||..+
T Consensus 29 ~~liG~NGsGKSTLl 43 (249)
T 2qi9_C 29 LHLVGPNGAGKSTLL 43 (249)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCcHHHHH
Confidence 456799999999854
No 453
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=27.27 E-value=12 Score=33.65 Aligned_cols=20 Identities=25% Similarity=0.471 Sum_probs=18.0
Q ss_pred ceEEEeecCCCCCcceeecc
Q psy7270 90 NVCIFAYGQTGAGKSYTMMG 109 (459)
Q Consensus 90 n~ti~aYGqTgSGKT~Tm~G 109 (459)
.+.|..|+.+|.|||+.-+|
T Consensus 28 ~g~i~v~tG~GkGKTTaA~G 47 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFG 47 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 57899999999999999876
No 454
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=27.23 E-value=17 Score=34.09 Aligned_cols=15 Identities=33% Similarity=0.419 Sum_probs=12.2
Q ss_pred EEeecCCCCCcceee
Q psy7270 93 IFAYGQTGAGKSYTM 107 (459)
Q Consensus 93 i~aYGqTgSGKT~Tm 107 (459)
+.-.|++|||||..+
T Consensus 48 ~~i~G~nGsGKSTLl 62 (271)
T 2ixe_A 48 TALVGPNGSGKSTVA 62 (271)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 456799999999754
No 455
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=27.18 E-value=52 Score=33.85 Aligned_cols=16 Identities=38% Similarity=0.540 Sum_probs=13.6
Q ss_pred EEEeecCCCCCcceee
Q psy7270 92 CIFAYGQTGAGKSYTM 107 (459)
Q Consensus 92 ti~aYGqTgSGKT~Tm 107 (459)
.|.-.|.+|+|||+|.
T Consensus 103 vI~ivG~~GvGKTTl~ 118 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTC 118 (504)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5666799999999986
No 456
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=27.18 E-value=2.5e+02 Score=22.83 Aligned_cols=22 Identities=32% Similarity=0.454 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHhhchhH
Q psy7270 351 IRELKEEIQRLRDLLKQEGIEV 372 (459)
Q Consensus 351 i~~l~~ei~~L~~~l~~~~~~~ 372 (459)
++..+.||..|+..+.....++
T Consensus 33 l~~~k~Ei~elrr~iq~L~~el 54 (131)
T 3tnu_A 33 VQSGKSEISELRRTMQNLEIEL 54 (131)
T ss_dssp --------CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555655655555444433
No 457
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=27.17 E-value=19 Score=38.61 Aligned_cols=18 Identities=22% Similarity=0.117 Sum_probs=14.6
Q ss_pred cCCceEEEeecCCCCCccee
Q psy7270 87 EGYNVCIFAYGQTGAGKSYT 106 (459)
Q Consensus 87 ~G~n~ti~aYGqTgSGKT~T 106 (459)
.|.| ++..|+||||||..
T Consensus 240 ~g~d--vlv~apTGSGKTl~ 257 (673)
T 2wv9_A 240 KRQL--TVLDLHPGAGKTRR 257 (673)
T ss_dssp TTCE--EEECCCTTTTTTTT
T ss_pred cCCe--EEEEeCCCCCHHHH
Confidence 5554 57889999999987
No 458
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=27.14 E-value=17 Score=31.80 Aligned_cols=16 Identities=38% Similarity=0.291 Sum_probs=13.3
Q ss_pred EEEeecCCCCCcceee
Q psy7270 92 CIFAYGQTGAGKSYTM 107 (459)
Q Consensus 92 ti~aYGqTgSGKT~Tm 107 (459)
.|+-.|..|||||+..
T Consensus 11 ~I~l~G~~GsGKsT~~ 26 (215)
T 1nn5_A 11 LIVLEGVDRAGKSTQS 26 (215)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5788899999998753
No 459
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=26.93 E-value=44 Score=28.27 Aligned_cols=23 Identities=22% Similarity=0.310 Sum_probs=18.7
Q ss_pred hhcCCceEEEeecCCCCCcceee
Q psy7270 85 AFEGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 85 ~l~G~n~ti~aYGqTgSGKT~Tm 107 (459)
++.-....|+..|.+|+|||.-+
T Consensus 11 ~~~~~~~~i~v~G~~~~GKssl~ 33 (187)
T 1zj6_A 11 LFNHQEHKVIIVGLDNAGKTTIL 33 (187)
T ss_dssp HHTTSCEEEEEEESTTSSHHHHH
T ss_pred hcCCCccEEEEECCCCCCHHHHH
Confidence 56667788999999999998644
No 460
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=26.90 E-value=1.2e+02 Score=26.39 Aligned_cols=100 Identities=17% Similarity=0.218 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchhHH----HHHHHHHhhhhcCCCCCCCcchhHHHHHHHHHHchHHHHHHHHHHHHHHH
Q psy7270 348 AKLIRELKEEIQRLRDLLKQEGIEVQ----EASELIMSKMAETPNAGENVDWDFAQVELLEKQGVDLKQEMQQRLRDLEE 423 (459)
Q Consensus 348 ~~~i~~l~~ei~~L~~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (459)
..+-..+.++++.++..|.-...++. ...+.+..++. |...+..+.-...++.|..++..+-++++.++.+--+
T Consensus 81 ~~Lr~~l~kdlee~r~~l~P~~~e~~~~~~~~~e~lr~~l~--Py~~el~~~~~~~~e~Lr~~L~p~~e~lr~~l~~~~e 158 (185)
T 3r2p_A 81 EGLRQEMSKDLEEVKAKVQPYLDDFQKKWQEEMELYRQKVE--PLRAELQEGARQKLHELQEKLSPLGEEMRDRARAHVD 158 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHTTTTTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH--HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7270 424 QYKREKNEADQAFEQQRKSSLRRISK 449 (459)
Q Consensus 424 ~~~~~~~e~~~~~~~~~~~~~~~~~~ 449 (459)
.++..-.=+.+.+.......++.+++
T Consensus 159 ~lk~~l~Py~ee~k~kl~~~leeLke 184 (185)
T 3r2p_A 159 ALRTHLAPYSDELRQRLAARLEALKE 184 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHhhc
No 461
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=26.86 E-value=21 Score=34.86 Aligned_cols=28 Identities=21% Similarity=0.353 Sum_probs=18.8
Q ss_pred HHHHHhhc-CCceEEEeecCCCCCcceee
Q psy7270 80 EMLEHAFE-GYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 80 plv~~~l~-G~n~ti~aYGqTgSGKT~Tm 107 (459)
.+|+.++. +-...+--.|+.|+|||.+|
T Consensus 60 ~ald~ll~i~~Gq~~gIiG~nGaGKTTLl 88 (347)
T 2obl_A 60 RAIDGLLTCGIGQRIGIFAGSGVGKSTLL 88 (347)
T ss_dssp HHHHHHSCEETTCEEEEEECTTSSHHHHH
T ss_pred EEEEeeeeecCCCEEEEECCCCCCHHHHH
Confidence 35566553 33345556799999999875
No 462
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=26.85 E-value=32 Score=33.37 Aligned_cols=28 Identities=21% Similarity=0.173 Sum_probs=19.2
Q ss_pred HHHHHHhhc-----CCc-eEEEeecCCCCCccee
Q psy7270 79 EEMLEHAFE-----GYN-VCIFAYGQTGAGKSYT 106 (459)
Q Consensus 79 ~plv~~~l~-----G~n-~ti~aYGqTgSGKT~T 106 (459)
-+-++.+|. |+- +.+.-||++|||||.-
T Consensus 11 i~~LD~~LGg~~~GGl~~GiteI~G~pGsGKTtL 44 (333)
T 3io5_A 11 IPMMNIALSGEITGGMQSGLLILAGPSKSFKSNF 44 (333)
T ss_dssp CHHHHHHHHSSTTCCBCSEEEEEEESSSSSHHHH
T ss_pred CHHHHHHhCCCCCCCCcCCeEEEECCCCCCHHHH
Confidence 345566665 232 3578999999999864
No 463
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=26.75 E-value=21 Score=31.07 Aligned_cols=15 Identities=27% Similarity=0.352 Sum_probs=12.6
Q ss_pred EEEeecCCCCCccee
Q psy7270 92 CIFAYGQTGAGKSYT 106 (459)
Q Consensus 92 ti~aYGqTgSGKT~T 106 (459)
.|.-.|+.|||||+.
T Consensus 4 ~i~i~G~~GsGKst~ 18 (208)
T 3ake_A 4 IVTIDGPSASGKSSV 18 (208)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 567789999999875
No 464
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=26.73 E-value=3.3e+02 Score=23.96 Aligned_cols=16 Identities=31% Similarity=0.378 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHh
Q psy7270 352 RELKEEIQRLRDLLKQ 367 (459)
Q Consensus 352 ~~l~~ei~~L~~~l~~ 367 (459)
.+++.++..|+..|..
T Consensus 20 ~~~~q~~~~le~El~E 35 (189)
T 2v71_A 20 MKYKQSFQEARDELVE 35 (189)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444555555555543
No 465
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=26.65 E-value=8.2 Score=33.63 Aligned_cols=16 Identities=19% Similarity=0.353 Sum_probs=12.6
Q ss_pred EEEeecCCCCCcceee
Q psy7270 92 CIFAYGQTGAGKSYTM 107 (459)
Q Consensus 92 ti~aYGqTgSGKT~Tm 107 (459)
.|.-.|.+|||||+.+
T Consensus 4 ~v~IvG~SGsGKSTL~ 19 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLI 19 (171)
T ss_dssp EEEEEESCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4556799999998765
No 466
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=26.47 E-value=3.9e+02 Score=24.76 Aligned_cols=11 Identities=18% Similarity=0.468 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q psy7270 355 KEEIQRLRDLL 365 (459)
Q Consensus 355 ~~ei~~L~~~l 365 (459)
.++++.++..|
T Consensus 43 ~~~le~lr~~L 53 (273)
T 3s84_A 43 GDNLRELQQRL 53 (273)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333343333
No 467
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=26.44 E-value=22 Score=29.32 Aligned_cols=18 Identities=22% Similarity=0.379 Sum_probs=14.3
Q ss_pred ceEEEeecCCCCCcceee
Q psy7270 90 NVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 90 n~ti~aYGqTgSGKT~Tm 107 (459)
..-|+..|.+|+|||..+
T Consensus 5 ~~~i~v~G~~~~GKssl~ 22 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMI 22 (168)
T ss_dssp EEEEEEECSTTSSHHHHH
T ss_pred eEEEEEECcCCCCHHHHH
Confidence 346788899999998654
No 468
>2eqz_A High mobility group protein B3; HMG-box domain, mobility group protein 2A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.34 E-value=56 Score=24.53 Aligned_cols=38 Identities=18% Similarity=0.252 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy7270 418 LRDLEEQYKREKNEADQAFEQQRKSSLRRISKQMKLSI 455 (459)
Q Consensus 418 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 455 (459)
...+.+.|...-++..+-++++.+.+.+++.++|+.|.
T Consensus 49 sk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~Y~ 86 (86)
T 2eqz_A 49 SKKCSERWKTMSGKEKSKFDEMAKADKVRYDREMKDYG 86 (86)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34556666666666777889999999999999999873
No 469
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=26.22 E-value=16 Score=37.16 Aligned_cols=19 Identities=26% Similarity=0.601 Sum_probs=15.8
Q ss_pred EEEeecCCCCCcceeeccC
Q psy7270 92 CIFAYGQTGAGKSYTMMGR 110 (459)
Q Consensus 92 ti~aYGqTgSGKT~Tm~G~ 110 (459)
..+-.|..|||||+.+...
T Consensus 163 v~~I~G~aGsGKTt~I~~~ 181 (446)
T 3vkw_A 163 VVLVDGVPGCGKTKEILSR 181 (446)
T ss_dssp EEEEEECTTSCHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHH
Confidence 4678999999999998553
No 470
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=25.78 E-value=18 Score=33.17 Aligned_cols=17 Identities=35% Similarity=0.399 Sum_probs=13.5
Q ss_pred eEEEeecCCCCCcceee
Q psy7270 91 VCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 91 ~ti~aYGqTgSGKT~Tm 107 (459)
-.|.--|++|||||..+
T Consensus 28 ~~I~I~G~~GsGKSTl~ 44 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLC 44 (252)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 35667799999999764
No 471
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=25.76 E-value=18 Score=37.29 Aligned_cols=28 Identities=21% Similarity=0.347 Sum_probs=19.9
Q ss_pred HHHHHhhc-C--CceEEEeecCCCCCcceee
Q psy7270 80 EMLEHAFE-G--YNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 80 plv~~~l~-G--~n~ti~aYGqTgSGKT~Tm 107 (459)
+.++++.- | -..++.-.|++|||||..+
T Consensus 26 ~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~ 56 (525)
T 1tf7_A 26 EGFDDISHGGLPIGRSTLVSGTSGTGKTLFS 56 (525)
T ss_dssp TTHHHHTTSSEETTSEEEEEESTTSSHHHHH
T ss_pred hhHHHhcCCCCCCCeEEEEEcCCCCCHHHHH
Confidence 34666666 3 3346777899999999864
No 472
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=25.72 E-value=36 Score=34.26 Aligned_cols=28 Identities=18% Similarity=0.266 Sum_probs=21.4
Q ss_pred HHHHHhhcCCc--eEEEeecCCCCCcceee
Q psy7270 80 EMLEHAFEGYN--VCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 80 plv~~~l~G~n--~ti~aYGqTgSGKT~Tm 107 (459)
+.++.++.|+. ..++-+|.+|+|||.-+
T Consensus 191 ~~LD~~~gGl~~G~liiI~G~pG~GKTtl~ 220 (454)
T 2r6a_A 191 TELDRMTSGFQRSDLIIVAARPSVGKTAFA 220 (454)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSCHHHHH
T ss_pred HHHHhhcCCCCCCCEEEEECCCCCCHHHHH
Confidence 45777776665 36788899999999654
No 473
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=25.48 E-value=22 Score=32.59 Aligned_cols=17 Identities=29% Similarity=0.448 Sum_probs=13.6
Q ss_pred eEEEeecCCCCCcceee
Q psy7270 91 VCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 91 ~ti~aYGqTgSGKT~Tm 107 (459)
..|.-.|++|||||+..
T Consensus 10 ~~i~i~G~~GsGKsTla 26 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVS 26 (233)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35778899999998653
No 474
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=25.48 E-value=27 Score=33.32 Aligned_cols=16 Identities=31% Similarity=0.466 Sum_probs=12.8
Q ss_pred EEEeecCCCCCcceee
Q psy7270 92 CIFAYGQTGAGKSYTM 107 (459)
Q Consensus 92 ti~aYGqTgSGKT~Tm 107 (459)
...-+|++|||||.-|
T Consensus 26 ~~~i~G~NGsGKS~ll 41 (322)
T 1e69_A 26 VTAIVGPNGSGKSNII 41 (322)
T ss_dssp EEEEECCTTTCSTHHH
T ss_pred cEEEECCCCCcHHHHH
Confidence 3457899999999765
No 475
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=25.39 E-value=16 Score=33.28 Aligned_cols=18 Identities=22% Similarity=0.198 Sum_probs=15.3
Q ss_pred EEEeecCCCCCcceeecc
Q psy7270 92 CIFAYGQTGAGKSYTMMG 109 (459)
Q Consensus 92 ti~aYGqTgSGKT~Tm~G 109 (459)
..|-||..|||||..++|
T Consensus 30 l~vitG~MgsGKTT~lL~ 47 (214)
T 2j9r_A 30 IEVICGSMFSGKSEELIR 47 (214)
T ss_dssp EEEEECSTTSCHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHH
Confidence 567899999999988765
No 476
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=25.37 E-value=20 Score=35.85 Aligned_cols=15 Identities=47% Similarity=0.576 Sum_probs=12.3
Q ss_pred EEEeecCCCCCccee
Q psy7270 92 CIFAYGQTGAGKSYT 106 (459)
Q Consensus 92 ti~aYGqTgSGKT~T 106 (459)
.|+-.|+||||||..
T Consensus 4 ~i~i~GptgsGKttl 18 (409)
T 3eph_A 4 VIVIAGTTGVGKSQL 18 (409)
T ss_dssp EEEEEECSSSSHHHH
T ss_pred EEEEECcchhhHHHH
Confidence 467789999999964
No 477
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=25.28 E-value=2.7e+02 Score=22.54 Aligned_cols=17 Identities=41% Similarity=0.528 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy7270 350 LIRELKEEIQRLRDLLK 366 (459)
Q Consensus 350 ~i~~l~~ei~~L~~~l~ 366 (459)
.|.+++..|+.|..+|.
T Consensus 37 Ei~elrr~iq~L~~el~ 53 (129)
T 3tnu_B 37 EISEMNRMIQRLRAEID 53 (129)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45555555555555553
No 478
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=25.17 E-value=25 Score=30.51 Aligned_cols=27 Identities=19% Similarity=0.197 Sum_probs=18.8
Q ss_pred HHHHh-hcCCceEEEeecCCCCCcceee
Q psy7270 81 MLEHA-FEGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 81 lv~~~-l~G~n~ti~aYGqTgSGKT~Tm 107 (459)
+++.+ +.-...-|...|.+|+|||..+
T Consensus 15 ~l~~~~~~~~~~ki~lvG~~~vGKSsLi 42 (198)
T 1f6b_A 15 VLQFLGLYKKTGKLVFLGLDNAGKTTLL 42 (198)
T ss_dssp HHHHHTCTTCCEEEEEEEETTSSHHHHH
T ss_pred HHHHhhccCCCcEEEEECCCCCCHHHHH
Confidence 44444 3334457888999999998765
No 479
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=24.91 E-value=20 Score=32.68 Aligned_cols=19 Identities=37% Similarity=0.457 Sum_probs=15.5
Q ss_pred CceEEEeecCCCCCcceee
Q psy7270 89 YNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 89 ~n~ti~aYGqTgSGKT~Tm 107 (459)
....|.-.|.+|+|||.++
T Consensus 21 ~~~~I~lvG~~g~GKStl~ 39 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAG 39 (260)
T ss_dssp CCEEEEEEECTTSCHHHHH
T ss_pred CceEEEEECCCCCCHHHHH
Confidence 3457888999999999875
No 480
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=24.87 E-value=13 Score=36.41 Aligned_cols=16 Identities=38% Similarity=0.617 Sum_probs=12.7
Q ss_pred EEEeecCCCCCcceee
Q psy7270 92 CIFAYGQTGAGKSYTM 107 (459)
Q Consensus 92 ti~aYGqTgSGKT~Tm 107 (459)
.+.-.|++|||||..|
T Consensus 28 ~~~llGpnGsGKSTLL 43 (348)
T 3d31_A 28 YFVILGPTGAGKTLFL 43 (348)
T ss_dssp EEEEECCCTHHHHHHH
T ss_pred EEEEECCCCccHHHHH
Confidence 3456799999999865
No 481
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=24.81 E-value=24 Score=28.88 Aligned_cols=17 Identities=29% Similarity=0.350 Sum_probs=13.3
Q ss_pred eEEEeecCCCCCcceee
Q psy7270 91 VCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 91 ~ti~aYGqTgSGKT~Tm 107 (459)
..|...|.+|+|||.-+
T Consensus 5 ~~i~v~G~~~~GKssl~ 21 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALT 21 (168)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 35778899999998643
No 482
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=24.80 E-value=30 Score=29.27 Aligned_cols=20 Identities=20% Similarity=0.358 Sum_probs=15.6
Q ss_pred CCceEEEeecCCCCCcceee
Q psy7270 88 GYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 88 G~n~ti~aYGqTgSGKT~Tm 107 (459)
.....|...|.+|+|||..+
T Consensus 16 ~~~~~i~v~G~~~~GKssl~ 35 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTIL 35 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHH
T ss_pred CCeeEEEEECCCCCCHHHHH
Confidence 45567889999999998654
No 483
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=24.77 E-value=18 Score=31.42 Aligned_cols=16 Identities=31% Similarity=0.401 Sum_probs=13.4
Q ss_pred EEEeecCCCCCcceee
Q psy7270 92 CIFAYGQTGAGKSYTM 107 (459)
Q Consensus 92 ti~aYGqTgSGKT~Tm 107 (459)
.|.-.|++|+|||..+
T Consensus 28 ~v~lvG~~g~GKSTLl 43 (210)
T 1pui_A 28 EVAFAGRSNAGKSSAL 43 (210)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5677899999999765
No 484
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=24.76 E-value=23 Score=32.29 Aligned_cols=16 Identities=38% Similarity=0.322 Sum_probs=13.3
Q ss_pred eEEEeecCCCCCccee
Q psy7270 91 VCIFAYGQTGAGKSYT 106 (459)
Q Consensus 91 ~ti~aYGqTgSGKT~T 106 (459)
-.|.-.|..|||||+.
T Consensus 23 ~iI~I~G~~GSGKST~ 38 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSV 38 (252)
T ss_dssp EEEEEECSTTSSHHHH
T ss_pred EEEEEECCCCCCHHHH
Confidence 4578889999999864
No 485
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=24.68 E-value=24 Score=29.49 Aligned_cols=18 Identities=28% Similarity=0.512 Sum_probs=14.5
Q ss_pred ceEEEeecCCCCCcceee
Q psy7270 90 NVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 90 n~ti~aYGqTgSGKT~Tm 107 (459)
...|+..|.+|+|||.-+
T Consensus 8 ~~~i~v~G~~~~GKSsli 25 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLM 25 (182)
T ss_dssp EEEEEEECCTTSSHHHHH
T ss_pred eEEEEEECCCCCCHHHHH
Confidence 456888999999998644
No 486
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=24.65 E-value=19 Score=30.18 Aligned_cols=17 Identities=18% Similarity=0.317 Sum_probs=13.8
Q ss_pred eEEEeecCCCCCcceee
Q psy7270 91 VCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 91 ~ti~aYGqTgSGKT~Tm 107 (459)
..|...|.+|+|||..+
T Consensus 9 ~~i~v~G~~~~GKssl~ 25 (178)
T 2lkc_A 9 PVVTIMGHVDHGKTTLL 25 (178)
T ss_dssp CEEEEESCTTTTHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 45788899999998654
No 487
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=24.56 E-value=23 Score=35.33 Aligned_cols=19 Identities=37% Similarity=0.347 Sum_probs=15.2
Q ss_pred CCceEEEeecCCCCCccee
Q psy7270 88 GYNVCIFAYGQTGAGKSYT 106 (459)
Q Consensus 88 G~n~ti~aYGqTgSGKT~T 106 (459)
+-...|+..|.+|||||+.
T Consensus 256 ~~~~lIil~G~pGSGKSTl 274 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTF 274 (416)
T ss_dssp SSCCEEEEESCTTSSHHHH
T ss_pred CCCEEEEEECCCCCCHHHH
Confidence 3446788899999999864
No 488
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=24.52 E-value=17 Score=31.13 Aligned_cols=17 Identities=29% Similarity=0.276 Sum_probs=13.9
Q ss_pred eEEEeecCCCCCcceee
Q psy7270 91 VCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 91 ~ti~aYGqTgSGKT~Tm 107 (459)
..|+..|.+|+|||..+
T Consensus 24 ~~i~v~G~~~~GKSsli 40 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFI 40 (195)
T ss_dssp CEEEEEEBTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 46788999999998654
No 489
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=24.44 E-value=19 Score=35.85 Aligned_cols=15 Identities=40% Similarity=0.592 Sum_probs=12.3
Q ss_pred EEeecCCCCCcceee
Q psy7270 93 IFAYGQTGAGKSYTM 107 (459)
Q Consensus 93 i~aYGqTgSGKT~Tm 107 (459)
+.-.|++|||||.+|
T Consensus 50 ~~llGpsGsGKSTLL 64 (390)
T 3gd7_A 50 VGLLGRTGSGKSTLL 64 (390)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCChHHHHH
Confidence 456799999999864
No 490
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=24.37 E-value=20 Score=33.95 Aligned_cols=16 Identities=38% Similarity=0.528 Sum_probs=12.8
Q ss_pred EEEeecCCCCCcceee
Q psy7270 92 CIFAYGQTGAGKSYTM 107 (459)
Q Consensus 92 ti~aYGqTgSGKT~Tm 107 (459)
+|...|.+|+|||+++
T Consensus 100 ~i~i~g~~G~GKTT~~ 115 (295)
T 1ls1_A 100 LWFLVGLQGSGKTTTA 115 (295)
T ss_dssp EEEEECCTTTTHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4555599999999886
No 491
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=24.33 E-value=25 Score=28.92 Aligned_cols=16 Identities=25% Similarity=0.407 Sum_probs=13.2
Q ss_pred EEEeecCCCCCcceee
Q psy7270 92 CIFAYGQTGAGKSYTM 107 (459)
Q Consensus 92 ti~aYGqTgSGKT~Tm 107 (459)
-|+..|.+|+|||.-+
T Consensus 5 ~i~v~G~~~~GKssli 20 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIV 20 (170)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5778899999998654
No 492
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=24.21 E-value=37 Score=34.01 Aligned_cols=28 Identities=11% Similarity=0.076 Sum_probs=21.6
Q ss_pred HHHHHhhcCCc--eEEEeecCCCCCcceee
Q psy7270 80 EMLEHAFEGYN--VCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 80 plv~~~l~G~n--~ti~aYGqTgSGKT~Tm 107 (459)
+-++.++.|+. ..++-+|.+|+|||.-+
T Consensus 188 ~~LD~~lgGl~~G~l~ii~G~pg~GKT~la 217 (444)
T 2q6t_A 188 KELDQLIGTLGPGSLNIIAARPAMGKTAFA 217 (444)
T ss_dssp HHHHHHHCCCCTTCEEEEEECTTSCHHHHH
T ss_pred HhhhhhcCCcCCCcEEEEEeCCCCCHHHHH
Confidence 56788887765 36788899999999643
No 493
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=24.07 E-value=19 Score=32.42 Aligned_cols=19 Identities=47% Similarity=0.503 Sum_probs=15.3
Q ss_pred CceEEEeecCCCCCcceee
Q psy7270 89 YNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 89 ~n~ti~aYGqTgSGKT~Tm 107 (459)
..-.|...|.+|+|||..+
T Consensus 28 ~~~~i~lvG~~g~GKStli 46 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATG 46 (239)
T ss_dssp CEEEEEEECCTTSSHHHHH
T ss_pred CceEEEEECCCCCCHHHHH
Confidence 3457889999999998654
No 494
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=24.06 E-value=98 Score=35.34 Aligned_cols=20 Identities=20% Similarity=0.360 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q psy7270 348 AKLIRELKEEIQRLRDLLKQ 367 (459)
Q Consensus 348 ~~~i~~l~~ei~~L~~~l~~ 367 (459)
...++++++++..++..|..
T Consensus 856 ~~El~~L~~eL~el~~~L~~ 875 (1184)
T 1i84_S 856 EEEMQAKDEELQRTKERQQK 875 (1184)
T ss_dssp HHHCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34445555666666555543
No 495
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=24.03 E-value=41 Score=29.59 Aligned_cols=20 Identities=25% Similarity=0.273 Sum_probs=13.9
Q ss_pred CCceEEEeecCCCCCcceee
Q psy7270 88 GYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 88 G~n~ti~aYGqTgSGKT~Tm 107 (459)
.....|.-.|..|+|||..+
T Consensus 36 ~~~~~i~ivG~~gvGKTtl~ 55 (226)
T 2hf9_A 36 HGVVAFDFMGAIGSGKTLLI 55 (226)
T ss_dssp TTCEEEEEEESTTSSHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHH
Confidence 33445556699999998654
No 496
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=23.94 E-value=40 Score=32.52 Aligned_cols=28 Identities=25% Similarity=0.475 Sum_probs=19.0
Q ss_pred HHHHHhh--cCCceEEEeecCCCCCcceee
Q psy7270 80 EMLEHAF--EGYNVCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 80 plv~~~l--~G~n~ti~aYGqTgSGKT~Tm 107 (459)
.+++.+- -+-...|.-.|++|||||..+
T Consensus 43 ~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl 72 (337)
T 2qm8_A 43 DLIDAVLPQTGRAIRVGITGVPGVGKSTTI 72 (337)
T ss_dssp HHHHHHGGGCCCSEEEEEECCTTSCHHHHH
T ss_pred HHHHhCCcccCCCeEEEEECCCCCCHHHHH
Confidence 4555443 244456777899999999876
No 497
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=23.90 E-value=62 Score=32.44 Aligned_cols=16 Identities=38% Similarity=0.528 Sum_probs=12.9
Q ss_pred EEEeecCCCCCcceee
Q psy7270 92 CIFAYGQTGAGKSYTM 107 (459)
Q Consensus 92 ti~aYGqTgSGKT~Tm 107 (459)
.|...|.+|+|||+++
T Consensus 100 vi~i~G~~GsGKTT~~ 115 (425)
T 2ffh_A 100 LWFLVGLQGSGKTTTA 115 (425)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4555599999999886
No 498
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=23.88 E-value=25 Score=28.92 Aligned_cols=17 Identities=41% Similarity=0.601 Sum_probs=13.6
Q ss_pred eEEEeecCCCCCcceee
Q psy7270 91 VCIFAYGQTGAGKSYTM 107 (459)
Q Consensus 91 ~ti~aYGqTgSGKT~Tm 107 (459)
.-|+..|.+|+|||.-+
T Consensus 7 ~~i~v~G~~~~GKSsli 23 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIM 23 (170)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEECcCCCCHHHHH
Confidence 35788899999998654
No 499
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=23.82 E-value=18 Score=30.81 Aligned_cols=15 Identities=27% Similarity=0.425 Sum_probs=0.0
Q ss_pred EEeecCCCCCcceee
Q psy7270 93 IFAYGQTGAGKSYTM 107 (459)
Q Consensus 93 i~aYGqTgSGKT~Tm 107 (459)
|...|.+|+|||..+
T Consensus 26 i~v~G~~~~GKSsli 40 (195)
T 3pqc_A 26 VAFVGRSNVGKSSLL 40 (195)
T ss_dssp EEEEEBTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
No 500
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=23.82 E-value=2.8e+02 Score=24.07 Aligned_cols=74 Identities=3% Similarity=-0.063 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHhhhhcCCCCCCCcchhHHHHHHHHHHchHHHHHHHHHHHH
Q psy7270 347 NAKLIRELKEEIQRLRDLLKQEGIEVQEASELIMSKMAETPNAGENVDWDFAQVELLEKQGVDLKQEMQQRLRD 420 (459)
Q Consensus 347 ~~~~i~~l~~ei~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (459)
.++...++++-.+..+.+.......+......+...+.........+.....++..+..++.....+++.++++
T Consensus 69 T~EQq~ql~~I~~e~r~~~~~Lr~ql~akr~EL~aL~~a~~~DeakI~aL~~Ei~~Lr~qL~~~R~k~~~em~K 142 (175)
T 3lay_A 69 TTEQQATAQKIYDDYYTQTSALRQQLISKRYEYNALLTASSPDTAKINAVAKEMESLGQKLDEQRVKRDVAMAQ 142 (175)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Done!