RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7270
(459 letters)
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha
and beta protein, enzyme, ATPase, P-loop, motor protein,
ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus}
SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A*
2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C*
1ia0_K* 2hxh_C*
Length = 366
Score = 604 bits (1561), Expect = 0.0
Identities = 260/366 (71%), Positives = 294/366 (80%), Gaps = 24/366 (6%)
Query: 2 SSVKVAVRVRPFNNREISRDCKSIIEMTGNTTVIINPKLPPESKDTHKNFNFDYSYYSHD 61
+SVKVAVRVRPFN+RE+SRD K II+M+G+TT I+NPK + K+T K+F+FDYSY+SH
Sbjct: 4 ASVKVAVRVRPFNSREMSRDSKCIIQMSGSTTTIVNPK---QPKETPKSFSFDYSYWSHT 60
Query: 62 -PSASNFATQAMVYSDIGEEMLEHAFEGYNVCIFAYGQTGAGKSYTMMGRQEVEGEEGII 120
P N+A+Q VY DIGEEML+HAFEGYNVCIFAYGQTGAGKSYTMMG+QE + ++GII
Sbjct: 61 SPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQE-KDQQGII 119
Query: 121 PMICQDLFKRIKDTTNDKLK-------------------SRWKNSNLRVREHPLLGPYVE 161
P +C+DLF RI DTTND + + NLRVREHPLLGPYVE
Sbjct: 120 PQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKGNLRVREHPLLGPYVE 179
Query: 162 DLSKLAVTCYRDIHDLIDEGNKARTVAATNMNETSSRSHAVFTIFFTQQAVDDMTDLTTE 221
DLSKLAVT Y DI DL+D GNK RTVAATNMNETSSRSHAVF I FTQ+ D T++TTE
Sbjct: 180 DLSKLAVTSYNDIQDLMDSGNKPRTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTE 239
Query: 222 KVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEISAVQHVAKKKK 281
KVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAE+ + + KKKK
Sbjct: 240 KVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKK 299
Query: 282 KADFIPYRDSVLTWLLRENLGGNSKTAMIAAISPADINYDETLSTLRYADRAKQIVCKAI 341
K DFIPYRDSVLTWLLRENLGGNS+TAM+AA+SPADINYDETLSTLRYADRAKQI
Sbjct: 300 KTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQIRNTVS 359
Query: 342 VNEDAN 347
VN +
Sbjct: 360 VNHHHH 365
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics,
structural genomics consortium, SGC, ATP-binding,
microtubule, motor protein; HET: ADP; 2.10A {Homo
sapiens}
Length = 354
Score = 581 bits (1500), Expect = 0.0
Identities = 187/361 (51%), Positives = 236/361 (65%), Gaps = 33/361 (9%)
Query: 2 SSVKVAVRVRPFNNREISRDCKSIIEMTGNTTVIINPK---LPPESKDTHKNFNFDYSYY 58
S VKVAVR+RP N RE K ++++ N ++ +++ K F +D+ ++
Sbjct: 1 SKVKVAVRIRPMNRRETDLHTKCVVDVDANKVILNPVNTNLSKGDARGQPKVFAYDHCFW 60
Query: 59 SHDPSA-SNFATQAMVYSDIGEEMLEHAFEGYNVCIFAYGQTGAGKSYTMMGRQEVEGEE 117
S D S +A Q +V+ +GE +L++AF+GYN CIFAYGQTG+GKSYTMMG + +
Sbjct: 61 SMDESVKEKYAGQDIVFKCLGENILQNAFDGYNACIFAYGQTGSGKSYTMMGTAD---QP 117
Query: 118 GIIPMICQDLFKRIKDTTNDK--------------------LKSRWKNSNLRVREHPLLG 157
G+IP +C LF+R + N++ L + L+VREH +LG
Sbjct: 118 GLIPRLCSGLFERTQKEENEEQSFKVEVSYMEIYNEKVRDLLDPKGSRQTLKVREHSVLG 177
Query: 158 PYVEDLSKLAVTCYRDIHDLIDEGNKARTVAATNMNETSSRSHAVFTIFFTQQAVDDMTD 217
PYV+ LSKLAVT Y+DI L+ EGNK+RTVAATNMNE SSRSHAVF I T D +
Sbjct: 178 PYVDGLSKLAVTSYKDIESLMSEGNKSRTVAATNMNEESSRSHAVFKITLTHTLYDVKSG 237
Query: 218 LTTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEISAVQHVA 277
+ EKV K+SLVDLAGSERA TGA G RLKEG+NINKSLTTLG VISALA+ S
Sbjct: 238 TSGEKVGKLSLVDLAGSERATKTGAAGDRLKEGSNINKSLTTLGLVISALADQS------ 291
Query: 278 KKKKKADFIPYRDSVLTWLLRENLGGNSKTAMIAAISPADINYDETLSTLRYADRAKQIV 337
K K F+PYRDSVLTWLL+++LGGNSKTAM+A +SPA NYDETLSTLRYADRAK
Sbjct: 292 AGKNKNKFVPYRDSVLTWLLKDSLGGNSKTAMVATVSPAADNYDETLSTLRYADRAKHHH 351
Query: 338 C 338
Sbjct: 352 H 352
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain,
ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora
crassa}
Length = 443
Score = 577 bits (1489), Expect = 0.0
Identities = 182/409 (44%), Positives = 241/409 (58%), Gaps = 52/409 (12%)
Query: 2 SSVKVAVRVRPFNNREISRDCKSIIEMTG--NTTVIINPKLPPESKDTH---------KN 50
++V+V VRVR F RE+ R+ + I+EM T ++ P+ + K+
Sbjct: 38 ANVRVVVRVRAFLPRELERNAECIVEMDPATERTSLLVPQETDFADARGARSRRVLEEKS 97
Query: 51 FNFDYSYYSHDPSASNFATQAMVYSDIGEEMLEHAFEGYNVCIFAYGQTGAGKSYTMMGR 110
F FD S++SH+ ++ATQ VY +GEE L+H FEGY+ CIFAYGQTG+GKSYTMMG
Sbjct: 98 FTFDKSFWSHNTEDEHYATQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTMMGT 157
Query: 111 QEVEGEEGIIPMICQDLFKRIKDTTNDKLKSRW-------------------------KN 145
+ + G+IP C+DLF+RI ++ +
Sbjct: 158 PD---QPGLIPRTCEDLFQRIASAQDETPNISYNVKVSYFEVYNEHVRDLLAPVVPNKPP 214
Query: 146 SNLRVREHPLLGPYVEDLSKLAVTCYRDIHDLIDEGNKARTVAATNMNETSSRSHAVFTI 205
L+VRE P GPYV+DL+++ V +I + G+ +RTVA+T MN+TSSRSHAVFTI
Sbjct: 215 YYLKVRESPTEGPYVKDLTEVPVRGLEEIIRWMRIGDGSRTVASTKMNDTSSRSHAVFTI 274
Query: 206 FFTQQAVDDMTDLTTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVIS 265
Q D TD TTE+ S+I LVDLAGSERA ST A G RL+EG+NINKSLTTLG+VI+
Sbjct: 275 MLKQIHHDLETDDTTERSSRIRLVDLAGSERAKSTEATGQRLREGSNINKSLTTLGRVIA 334
Query: 266 ALAEISA----------VQHVAKKKKKADFIPYRDSVLTWLLRENLGGNSKTAMIAAISP 315
ALA+ + +PYRDSVLTWLL+++LGGNSKTAMIA ISP
Sbjct: 335 ALADPKSSASRPSSPVKSGRGRTPGPANSVVPYRDSVLTWLLKDSLGGNSKTAMIACISP 394
Query: 316 ADINYDETLSTLRYADRAKQIVCKAIVNEDANAKLIRELKEEIQRLRDL 364
D YDETLSTLRYAD+AK+I +A+VN+ E +I +
Sbjct: 395 TD--YDETLSTLRYADQAKRIRTRAVVNQVDGVSAA-ERDAQIPSIVHR 440
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor
domain, ADP, SGC, ATP-binding, coiled coil, microtubule,
motor protein; HET: ADP; 1.80A {Homo sapiens} PDB:
3b6v_A*
Length = 372
Score = 544 bits (1403), Expect = 0.0
Identities = 142/371 (38%), Positives = 199/371 (53%), Gaps = 36/371 (9%)
Query: 2 SSVKVAVRVRPFNNREISRDCKSIIEMTGNTTVIINPKLPPESKDTHKNFNFDYSYYSHD 61
SV+V VR RP N +E + ++++ + + + K F FD Y +
Sbjct: 21 ESVRVVVRCRPMNGKEKAASYDKVVDVDVKLGQVSVKNPKGTAHEMPKTFTFDAVYDWN- 79
Query: 62 PSASNFATQAMVYSDIGEEMLEHAFEGYNVCIFAYGQTGAGKSYTMMGRQEVEGEEGIIP 121
A Q +Y + +++ +G+N IFAYGQTG GK+YTM G + + G+IP
Sbjct: 80 ------AKQFELYDETFRPLVDSVLQGFNGTIFAYGQTGTGKTYTMEGIRGDPEKRGVIP 133
Query: 122 MICQDLFKRIKDTTNDK-----------------LKSRWKNSNLRVREHPLLGPYVEDLS 164
+F I + N + L S+ + L ++E P G YV+DLS
Sbjct: 134 NSFDHIFTHISRSQNQQYLVRASYLEIYQEEIRDLLSKDQTKRLELKERPDTGVYVKDLS 193
Query: 165 KLAVTCYRDIHDLIDEGNKARTVAATNMNETSSRSHAVFTIFFTQQAVDDMTDLTTEKVS 224
++I +++ GN+ R+V ATNMNE SSRSHA+F I V + +V
Sbjct: 194 SFVTKSVKEIEHVMNVGNQNRSVGATNMNEHSSRSHAIFVITIECSEVGLDGE-NHIRVG 252
Query: 225 KISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEISAVQHVAKKKKKAD 284
K++LVDLAGSER TGA+G RLKE IN SL+ LG VISAL + K+
Sbjct: 253 KLNLVDLAGSERQAKTGAQGERLKEATKINLSLSALGNVISALVD-----------GKST 301
Query: 285 FIPYRDSVLTWLLRENLGGNSKTAMIAAISPADINYDETLSTLRYADRAKQIVCKAIVNE 344
IPYRDS LT LL+++LGGN+KT M+A + PA N +ETL+TLRYA+RAK I K VNE
Sbjct: 302 HIPYRDSKLTRLLQDSLGGNAKTVMVANVGPASYNVEETLTTLRYANRAKNIKNKPRVNE 361
Query: 345 DANAKLIRELK 355
D L+RE +
Sbjct: 362 DPKDALLREFQ 372
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule,
ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Length = 350
Score = 529 bits (1366), Expect = 0.0
Identities = 152/377 (40%), Positives = 201/377 (53%), Gaps = 53/377 (14%)
Query: 1 MSS--VKVAVRVRPFNNREISRDCKSIIEMTGNTTVII-----NPKLPPESKDTHKNFNF 53
MSS +KV VR RP N RE + +II M + +I K ++K + F F
Sbjct: 1 MSSDNIKVIVRCRPLNARETRENALNIIRMDEASAQVIVDPPEQEKSATQAKKVPRTFTF 60
Query: 54 DYSYYSHDPSASNFATQAMVYSDIGEEMLEHAFEGYNVCIFAYGQTGAGKSYTMMGRQEV 113
D Y + ++ + +++ EG+N IFAYGQTGAGK++TM G +E
Sbjct: 61 DAVYDQT-------SCNYGIFQASFKPLIDAVLEGFNSTIFAYGQTGAGKTWTMGGNKE- 112
Query: 114 EGEEGIIPMICQDLFKRIKDTTNDK-------------------LKSRWKNSNLRVREHP 154
E G IP + LF I +++++ +K N+ L ++E
Sbjct: 113 --EPGAIPNSFKHLFDAINSSSSNQNFLVIGSYLELYNEEIRDLIK---NNTKLPLKEDK 167
Query: 155 LLGPYVEDLSKLAVTCYRDIHDLIDEGNKARTVAATNMNETSSRSHAVFTIFFTQQAVDD 214
G YV+ LS VT ++ L+D+G R VAAT MN+TSSRSH++F + V +
Sbjct: 168 TRGIYVDGLSMHRVTTAAELSALMDKGFANRHVAATQMNDTSSRSHSIFMVRIECSEVIE 227
Query: 215 MTDLTTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEISAVQ 274
+ +V K++LVDLAGSER TGA G L EGA IN SL+ LG VIS L E
Sbjct: 228 --NKEVIRVGKLNLVDLAGSERQSKTGATGETLVEGAKINLSLSALGLVISKLVE----- 280
Query: 275 HVAKKKKKADFIPYRDSVLTWLLRENLGGNSKTAMIAAISPADINYDETLSTLRYADRAK 334
A IPYRDS LT LL+++LGGNSKT M A ISPA NYDET+STLRYADRAK
Sbjct: 281 -------GATHIPYRDSKLTRLLQDSLGGNSKTLMCANISPASTNYDETMSTLRYADRAK 333
Query: 335 QIVCKAIVNEDANAKLI 351
QI K +NED I
Sbjct: 334 QIKNKPRINEDPKDAQI 350
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A
{Neurospora crassa} SCOP: c.37.1.9
Length = 355
Score = 527 bits (1361), Expect = 0.0
Identities = 134/379 (35%), Positives = 198/379 (52%), Gaps = 50/379 (13%)
Query: 2 SSVKVAVRVRPFNNREISRDCKSIIEMTGNTTVIINPKLPPESKDTHKNFNFDYSYYSHD 61
+S+KV R RP N EI + I+ G T ++ K +F FD +
Sbjct: 6 NSIKVVARFRPQNRVEIESGGQPIVTFQGPDTCTVDSKEAQ------GSFTFDRVFDMS- 58
Query: 62 PSASNFATQAMVYSDIGEEMLEHAFEGYNVCIFAYGQTGAGKSYTMMGRQEVEGEE-GII 120
Q+ ++ + ++ GYN +FAYGQTGAGKSYTMMG + + G+I
Sbjct: 59 ------CKQSDIFDFSIKPTVDDILNGYNGTVFAYGQTGAGKSYTMMGTSIDDPDGRGVI 112
Query: 121 PMICQDLFKRIKDTTNDK-------------------LKSRWKNSNLRVREHPLLGPYVE 161
P I + +F I + + L +N NL V E G YV+
Sbjct: 113 PRIVEQIFTSILSSAANIEYTVRVSYMEIYMERIRDLLAP--QNDNLPVHEEKNRGVYVK 170
Query: 162 DLSKLAVTCYRDIHDLIDEGNKARTVAATNMNETSSRSHAVFTIFFTQQAVDDMTDLTTE 221
L ++ V+ +++++++ G AR VAATNMN+ SSRSH++F I TQ+ V+ +
Sbjct: 171 GLLEIYVSSVQEVYEVMRRGGNARAVAATNMNQESSRSHSIFVITITQKNVET----GSA 226
Query: 222 KVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEISAVQHVAKKKK 281
K ++ LVDLAGSE+ TGA G L+E INKSL+ LG VI+AL +
Sbjct: 227 KSGQLFLVDLAGSEKVGKTGASGQTLEEAKKINKSLSALGMVINALTD-----------G 275
Query: 282 KADFIPYRDSVLTWLLRENLGGNSKTAMIAAISPADINYDETLSTLRYADRAKQIVCKAI 341
K+ +PYRDS LT +L+E+LGGNS+T +I SP+ N ETLSTLR+ RAK I KA
Sbjct: 276 KSSHVPYRDSKLTRILQESLGGNSRTTLIINCSPSSYNDAETLSTLRFGMRAKSIKNKAK 335
Query: 342 VNEDANAKLIRELKEEIQR 360
VN + + ++++ + +
Sbjct: 336 VNAELSPAELKQMLAKAKT 354
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP
complex, stranded beta-sheet core with solvent exposed
alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Length = 349
Score = 514 bits (1325), Expect = 0.0
Identities = 133/375 (35%), Positives = 191/375 (50%), Gaps = 48/375 (12%)
Query: 2 SSVKVAVRVRPFNNREISRDCKSIIEMTGNTTVIINPKLPPESKDTHKNFNFDYSYYSHD 61
+V V VRVRP N+RE S + + + VI K+FNFD ++ ++
Sbjct: 4 GAVAVCVRVRPLNSREESLGETAQVYWKTDNNVIYQVDGS-------KSFNFDRVFHGNE 56
Query: 62 PSASNFATQAMVYSDIGEEMLEHAFEGYNVCIFAYGQTGAGKSYTMMGRQEVEGEEGIIP 121
T VY +I +++ A +GYN IFAYGQT +GK+YTMMG ++ G+IP
Sbjct: 57 -------TTKNVYEEIAAPIIDSAIQGYNGTIFAYGQTASGKTYTMMGSED---HLGVIP 106
Query: 122 MICQDLFKRIKDTTN------------------DKLKSRWKNSNLRVREHPLLGPYVEDL 163
D+F++IK + D L K L +RE YV DL
Sbjct: 107 RAIHDIFQKIKKFPDREFLLRVSYMEIYNETITDLLCGTQKMKPLIIREDVNRNVYVADL 166
Query: 164 SKLAVTCYRDIHDLIDEGNKARTVAATNMNETSSRSHAVFTIFFTQQAVDDMTDL-TTEK 222
++ V I +G K+R T MN+ SSRSH +F + + + ++ + K
Sbjct: 167 TEEVVYTSEMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESREKGEPSNCEGSVK 226
Query: 223 VSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEISAVQHVAKKKKK 282
VS ++LVDLAGSERA TGA G RLKEG NIN+SL LG+VI L++ +
Sbjct: 227 VSHLNLVDLAGSERAAQTGAAGVRLKEGCNINRSLFILGQVIKKLSD----------GQV 276
Query: 283 ADFIPYRDSVLTWLLRENLGGNSKTAMIAAISPADINYDETLSTLRYADRAKQIVCKAIV 342
FI YRDS LT +L+ +LGGN+KT +I I+P ++DETL+ L++A AK + V
Sbjct: 277 GGFINYRDSKLTRILQNSLGGNAKTRIICTITPV--SFDETLTALQFASTAKYMKNTPYV 334
Query: 343 NEDANAKLIRELKEE 357
NE + +L
Sbjct: 335 NEVSTDELEHHHHHH 349
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding,
microtubule binding, ATP- cell projection, cytoskeleton,
glycoprotein, microtubule; HET: ADP; 2.20A {Homo
sapiens}
Length = 355
Score = 509 bits (1312), Expect = 0.0
Identities = 133/369 (36%), Positives = 192/369 (52%), Gaps = 57/369 (15%)
Query: 2 SSVKVAVRVRPFNNREISRDCKSIIEMTGNTTVIINPKLPPES---------------KD 46
+KV VRVRP N +E + ++ + ++ +PK S ++
Sbjct: 10 HHMKVVVRVRPENTKEKAAGFHKVVHVVDKHILVFDPKQEEVSFFHGKKTTNQNVIKKQN 69
Query: 47 THKNFNFDYSYYSHDPSASNFATQAMVYSDIGEEMLEHAFEGYNVCIFAYGQTGAGKSYT 106
F FD + +TQ+ V+ + +L GYN + AYG TGAGK++T
Sbjct: 70 KDLKFVFDAVFDET-------STQSEVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHT 122
Query: 107 MMGRQEVEGEEGIIPMICQDLFKRIKDTTNDK-------------------LKSRWKNSN 147
M+G + E G++ + L+K + + +K L +
Sbjct: 123 MLGSAD---EPGVMYLTMLHLYKCMDEIKEEKICSTAVSYLEVYNEQIRDLLV---NSGP 176
Query: 148 LRVREHPLLGPYVEDLSKLAVTCYRDIHDLIDEGNKARTVAATNMNETSSRSHAVFTIFF 207
L VRE G V L+ +I L+D GNK RT T+MN TSSRSHAVF I+
Sbjct: 177 LAVREDTQKGVVVHGLTLHQPKSSEEILHLLDNGNKNRTQHPTDMNATSSRSHAVFQIYL 236
Query: 208 TQQAVDDMTDLTTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISAL 267
QQ + +++K+SL+DLAGSERA ++GAKGTR EG NIN+SL LG VI+AL
Sbjct: 237 RQQDKTASIN-QNVRIAKMSLIDLAGSERASTSGAKGTRFVEGTNINRSLLALGNVINAL 295
Query: 268 AEISAVQHVAKKKKKADFIPYRDSVLTWLLRENLGGNSKTAMIAAISPADINYDETLSTL 327
A+ K+K IPYR+S LT LL+++LGGN +T MIAA+SP+ + YD+T +TL
Sbjct: 296 AD---------SKRKNQHIPYRNSKLTRLLKDSLGGNCQTIMIAAVSPSSVFYDDTYNTL 346
Query: 328 RYADRAKQI 336
+YA+RAK I
Sbjct: 347 KYANRAKDI 355
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural
genomics consortium domain, ADP, SGC, ATP-binding,
DNA-binding, microtubule, MO protein; HET: ADP; 2.30A
{Homo sapiens}
Length = 388
Score = 506 bits (1304), Expect = e-179
Identities = 110/384 (28%), Positives = 176/384 (45%), Gaps = 48/384 (12%)
Query: 2 SSVKVAVRVRPFNNREISRDCKSIIEMTGNTTVIINPKLPPESKDTHKNFNFDYSYYSHD 61
+ V+VAVR+RPF + + + ++ I + + FD Y
Sbjct: 21 ARVRVAVRLRPFVDGTAGASDPPCVRGMDSCSLEI---ANWRNHQETLKYQFDAFYGER- 76
Query: 62 PSASNFATQAMVYSDIGEEMLEHAFEGYNVCIFAYGQTGAGKSYTMMGRQEVEGEEGIIP 121
+TQ +Y+ + +L H EG N + AYG TGAGK++TM+G E + G+IP
Sbjct: 77 ------STQQDIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHTMLGSPE---QPGVIP 127
Query: 122 MICQDLFKRIKDTTNDKLKSRW--------------------KNSNLRVREHPLLGPYVE 161
DL + ++ + + +L +RE +
Sbjct: 128 RALMDLLQLTREEGAEGRPWALSVTMSYLEIYQEKVLDLLDPASGDLVIREDCRGNILIP 187
Query: 162 DLSKLAVTCYRDIHDLIDEGNKARTVAATNMNETSSRSHAVFTIFFTQQAVDDMTDLTTE 221
LS+ ++ + D ++ RTV AT +N+ SSRSHAV + Q+ + +
Sbjct: 188 GLSQKPISSFADFERHFLPASRNRTVGATRLNQRSSRSHAVLLVKVDQR---ERLAPFRQ 244
Query: 222 KVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEISAVQHVAKKKK 281
+ K+ L+DLAGSE TG KG RLKE IN SL LGKV+ AL +
Sbjct: 245 REGKLYLIDLAGSEDNRRTGNKGLRLKESGAINTSLFVLGKVVDALNQ------------ 292
Query: 282 KADFIPYRDSVLTWLLRENLGGNSKTAMIAAISPADINYDETLSTLRYADRAKQIVCKAI 341
+PYRDS LT LL+++LGG++ + +IA I+P Y +T+S L +A R+K+++ +
Sbjct: 293 GLPRVPYRDSKLTRLLQDSLGGSAHSILIANIAPERRFYLDTVSALNFAARSKEVINRPF 352
Query: 342 VNEDANAKLIRELKEEIQRLRDLL 365
NE + +K + L
Sbjct: 353 TNESLQPHALGPVKLSQKELLGPP 376
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A
{Drosophila melanogaster} PDB: 2y5w_A*
Length = 365
Score = 488 bits (1258), Expect = e-173
Identities = 133/386 (34%), Positives = 190/386 (49%), Gaps = 51/386 (13%)
Query: 2 SSVKVAVRVRPFNNREISRDCKSIIEMTGNTTVIINPKLPPESKDTHKNFNFDYSYYSHD 61
S+KV R RP N+ E K +++ N K + FD + +
Sbjct: 11 DSIKVVCRFRPLNDSEEKAGSKFVVKFPNNVEENCI-------SIAGKVYLFDKVFKPN- 62
Query: 62 PSASNFATQAMVYSDIGEEMLEHAFEGYNVCIFAYGQTGAGKSYTMMGRQEVEGEEGIIP 121
A+Q VY++ + ++ GYN IFAYGQT +GK++TM G ++GIIP
Sbjct: 63 ------ASQEKVYNEAAKSIVTDVLAGYNGTIFAYGQTSSGKTHTMEGVIGDSVKQGIIP 116
Query: 122 MICQDLFKRIKDTTNDK-------------------LKSRWKNSNLRVREHPLLGPYVED 162
I D+F I + L NL V E PYV+
Sbjct: 117 RIVNDIFNHIYAMEVNLEFHIKVSYYEIYMDKIRDLLDV--SKVNLSVHEDKNRVPYVKG 174
Query: 163 LSKLAVTCYRDIHDLIDEGNKARTVAATNMNETSSRSHAVFTIFFTQQAVDDMTDLTTEK 222
++ V+ D+ ++I+EG R +A TNMNE SSRSH+VF I Q+ +++ +
Sbjct: 175 ATERFVSSPEDVFEVIEEGKSNRHIAVTNMNEHSSRSHSVFLINVKQENLEN----QKKL 230
Query: 223 VSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEISAVQHVAKKKKK 282
K+ LVDLAGSE+ TGA+GT L E NINKSL+ LG VISALA+
Sbjct: 231 SGKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSALGNVISALAD-----------GN 279
Query: 283 ADFIPYRDSVLTWLLRENLGGNSKTAMIAAISPADINYDETLSTLRYADRAKQIVCKAIV 342
IPYRDS LT +L+E+LGGN++T ++ SPA N ET STL + RAK + V
Sbjct: 280 KTHIPYRDSKLTRILQESLGGNARTTIVICCSPASFNESETKSTLDFGRRAKTVKNVVCV 339
Query: 343 NEDANAK-LIRELKEEIQRLRDLLKQ 367
NE+ A+ R ++E ++ L +
Sbjct: 340 NEELTAEEWKRRYEKEKEKNARLKGK 365
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker,
cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP:
c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A*
2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A*
2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A*
1q0b_A* ...
Length = 359
Score = 484 bits (1247), Expect = e-171
Identities = 125/371 (33%), Positives = 189/371 (50%), Gaps = 48/371 (12%)
Query: 2 SSVKVAVRVRPFNNREISRDCKSIIEMTGNTTVIINPKLPPESKDTHKNFNFDYSYYSHD 61
+++V VR RPFN E SI+E + K + K + FD + +
Sbjct: 8 KNIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGAS- 66
Query: 62 PSASNFATQAMVYSDIGEEMLEHAFEGYNVCIFAYGQTGAGKSYTMMGRQEVEGEE---- 117
Q VY + +L+ GYN IFAYGQTG GK++TM G + E
Sbjct: 67 ------TKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEE 120
Query: 118 ----GIIPMICQDLFKRIKDTT-------------NDKLK-----SRWKNSNLRVREHPL 155
GIIP +F+++ D N++L S + L++ + P
Sbjct: 121 DPLAGIIPRTLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPR 180
Query: 156 --LGPYVEDLSKLAVTCYRDIHDLIDEGNKARTVAATNMNETSSRSHAVFTIFFTQQAVD 213
G ++ L ++ V +++ ++++G RT AAT MN SSRSH+VF++ +
Sbjct: 181 NKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETT 240
Query: 214 DMTDLTTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEISAV 273
+ K+ K++LVDLAGSE +GA R +E NIN+SL TLG+VI+AL E
Sbjct: 241 IDGE-ELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVE---- 295
Query: 274 QHVAKKKKKADFIPYRDSVLTWLLRENLGGNSKTAMIAAISPADINYDETLSTLRYADRA 333
+ +PYR+S LT +L+++LGG ++T++IA ISPA +N +ETLSTL YA RA
Sbjct: 296 --------RTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRA 347
Query: 334 KQIVCKAIVNE 344
K I+ K VN+
Sbjct: 348 KNILNKPEVNQ 358
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain;
HET: ADP; 1.60A {Homo sapiens} PDB: 2xt3_A*
Length = 344
Score = 469 bits (1210), Expect = e-166
Identities = 120/358 (33%), Positives = 177/358 (49%), Gaps = 49/358 (13%)
Query: 2 SSVKVAVRVRPFNNREISRDCKSIIEMTGNTTVIINPKLPPESKDTHKNFNFDYSYYSHD 61
+ V+VA+RVRP +E+ +S +++ + + ++F F
Sbjct: 11 APVRVALRVRPLLPKELLHGHQSCLQVEPGLGRVTLGR--------DRHFGFHVVLAED- 61
Query: 62 PSASNFATQAMVYSDIGEEMLEHAFEGYNVCIFAYGQTGAGKSYTMMGRQEVEGEE---G 118
A Q VY + +LE FEG+N +FAYGQTG+GK+YTM E G
Sbjct: 62 ------AGQEAVYQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTMGEASVASLLEDEQG 115
Query: 119 IIPMICQDLFKRIKDTTN------------------DKLKSRWKNSNLRVREHPLLGPYV 160
I+P + FK I + D L+ + ++++RE +
Sbjct: 116 IVPRAMAEAFKLIDENDLLDCLVHVSYLEVYKEEFRDLLEVGTASRDIQLREDERGNVVL 175
Query: 161 EDLSKLAVTCYRDIHDLIDEGNKARTVAATNMNETSSRSHAVFTIFFTQQAVDDMTDLTT 220
+ ++ V ++ L++ GN AR AT++N SSRSH VFT+ Q+
Sbjct: 176 CGVKEVDVEGLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLEQRGRAPSRLPRP 235
Query: 221 E----KVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEISAVQHV 276
VSK VDLAGSER TG+ G RLKE IN SL LG VISAL +
Sbjct: 236 APGQLLVSKFHFVDLAGSERVLKTGSTGERLKESIQINSSLLALGNVISALGD------- 288
Query: 277 AKKKKKADFIPYRDSVLTWLLRENLGGNSKTAMIAAISPADINYDETLSTLRYADRAK 334
+++ IPYRDS +T +L+++LGGN+KT MIA +SP+ ++DETL+TL YA RA+
Sbjct: 289 --PQRRGSHIPYRDSKITRILKDSLGGNAKTVMIACVSPSSSDFDETLNTLNYASRAQ 344
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP;
1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A*
2kin_A* 3kin_A*
Length = 325
Score = 468 bits (1206), Expect = e-165
Identities = 131/354 (37%), Positives = 179/354 (50%), Gaps = 54/354 (15%)
Query: 2 SSVKVAVRVRPFNNREISRDCKSIIEMTGNTTVIINPKLPPESKDTHKNFNFDYSYYSHD 61
++KV R RP N E++R K I + G TV+I K + FD + S
Sbjct: 7 CNIKVMCRFRPLNESEVNRGDKYIAKFQGEDTVVIASK----------PYAFDRVFQSS- 55
Query: 62 PSASNFATQAMVYSDIGEEMLEHAFEGYNVCIFAYGQTGAGKSYTMMGRQEVEGEEGIIP 121
+Q VY+D +++++ EGYN IFAYGQT +GK++TM G+ GIIP
Sbjct: 56 ------TSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPEGMGIIP 109
Query: 122 MICQDLFKRIKDTTNDK-------------------LKSRWKNSNLRVREHPLLGPYVED 162
I QD+F I + L +NL V E PYV+
Sbjct: 110 RIVQDIFNYIYSMDENLEFHIKVSYFEIYLDKIRDLLDV--SKTNLSVHEDKNRVPYVKG 167
Query: 163 LSKLAVTCYRDIHDLIDEGNKARTVAATNMNETSSRSHAVFTIFFTQQAVDDMTDLTTEK 222
++ V ++ D IDEG R VA TNMNE SSRSH++F I Q+ +
Sbjct: 168 CTERFVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQT----EQKL 223
Query: 223 VSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEISAVQHVAKKKKK 282
K+ LVDLAGSE+ TGA+G L E NINKSL+ LG VISALAE
Sbjct: 224 SGKLYLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAE------------G 271
Query: 283 ADFIPYRDSVLTWLLRENLGGNSKTAMIAAISPADINYDETLSTLRYADRAKQI 336
+ ++PYRDS +T +L+++LGGN +T ++ SP+ N ET STL + RAK I
Sbjct: 272 STYVPYRDSKMTRILQDSLGGNCRTTIVICCSPSSYNESETKSTLLFGQRAKTI 325
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule,
ADP, nucleotide-binding protein, ATP-binding, coiled
coil, motor protein; HET: ADP; 1.90A {Drosophila
melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Length = 344
Score = 461 bits (1189), Expect = e-162
Identities = 101/359 (28%), Positives = 161/359 (44%), Gaps = 53/359 (14%)
Query: 1 MSSVKVAVRVRPFNNREISRDCKSIIEMTGNTTVIINPKLPPESKDTHKNFNFDYSYYSH 60
+S+V++AVR P+ R S+++ + F+FD+++ +
Sbjct: 21 LSAVRIAVREAPYRQFLG-RREPSVVQFPPWSD-------GKSLIVDQNEFHFDHAFPAT 72
Query: 61 DPSASNFATQAMVYSDIGEEMLEHAFEGYNVCIFAYGQTGAGKSYTMMGRQEVEGEE--- 117
+Q +Y + +++ EG+ AYGQTG GKSY+M E
Sbjct: 73 -------ISQDEMYQALILPLVDKLLEGFQCTALAYGQTGTGKSYSMGMTPPGEILPEHL 125
Query: 118 GIIPMICQDLFKRIKDTT-NDKLKSRWKNS-----NLRVR-------EHPLLGPYVEDLS 164
GI+P D+F+R+ N+K + S N + P++ + +
Sbjct: 126 GILPRALGDIFERVTARQENNKDAIQVYASFIEIYNEKPFDLLGSTPHMPMVAARCQRCT 185
Query: 165 KLAVTCYRDIHDLIDEGNKARTVAATNMNETSSRSHAVFTIFFTQQAVDDMTDLTTEKVS 224
L + D+H +++ G + R V TNMN SSRSHA+ TI + S
Sbjct: 186 CLPLHSQADLHHILELGTRNRRVRPTNMNSNSSRSHAIVTIHVKSK----------THHS 235
Query: 225 KISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEISAVQHVAKKKKKAD 284
++++VDLAGSE TG +G +EG NIN L ++ KV+ ++A
Sbjct: 236 RMNIVDLAGSEGVRRTGHEGVARQEGVNINLGLLSINKVVMSMAA------------GHT 283
Query: 285 FIPYRDSVLTWLLRENLGGNSKTAMIAAISPADINYDETLSTLRYADRAKQIVCKAIVN 343
IPYRDSVLT +L+ +L S +A ISP + ETLSTLR+ AK + +
Sbjct: 284 VIPYRDSVLTTVLQASLTAQSYLTFLACISPHQCDLSETLSTLRFGTSAKAAALEHHHH 342
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis,
GTP-binding, motor protein, cell division, cell cycle,
microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A
{Drosophila melanogaster}
Length = 373
Score = 458 bits (1181), Expect = e-161
Identities = 128/373 (34%), Positives = 190/373 (50%), Gaps = 50/373 (13%)
Query: 2 SSVKVAVRVRPFNNREISRDCKSIIEMTGNTTVIINPKLPPESKDTHKNFNFDYSYYSHD 61
+++V VRVRP N+RE ++++ G V+ L + K F FD S+
Sbjct: 23 QNIQVYVRVRPLNSRERCIRSAEVVDVVGPREVVTRHTLDSKLT---KKFTFDRSFGPE- 78
Query: 62 PSASNFATQAMVYSDIGEEMLEHAFEGYNVCIFAYGQTGAGKSYTMMG--------RQEV 113
+ Q VYS + ++E GYN +FAYGQTG GK++TM+G E
Sbjct: 79 ------SKQCDVYSVVVSPLIEEVLNGYNCTVFAYGQTGTGKTHTMVGNETAELKSSWED 132
Query: 114 EGEEGIIPMICQDLFKRIKDTT-------------NDKLK---SRWKNSNLRVREHPLL- 156
+ + GIIP LF ++ N++L S + +R+ +
Sbjct: 133 DSDIGIIPRALSHLFDELRMMEVEYTMRISYLELYNEELCDLLSTDDTTKIRIFDDSTKK 192
Query: 157 -GPYVEDLSKLAVTCYRDIHDLIDEGNKARTVAATNMNETSSRSHAVFTIFFTQQAVDDM 215
++ L ++ V D++ L+++G + R A T MN SSRSH VF+I +
Sbjct: 193 GSVIIQGLEEIPVHSKDDVYKLLEKGKERRKTATTLMNAQSSRSHTVFSIVVHIRENGIE 252
Query: 216 TDLTTEKVSKISLVDLAGSERADSTG-AKGTRLKEGANINKSLTTLGKVISALAEISAVQ 274
+ K+ K++LVDLAGSE G KG R++E NIN+SL TLG+VI+AL +
Sbjct: 253 GE-DMLKIGKLNLVDLAGSENVSKAGNEKGIRVRETVNINQSLLTLGRVITALVD----- 306
Query: 275 HVAKKKKKADFIPYRDSVLTWLLRENLGGNSKTAMIAAISPADINYDETLSTLRYADRAK 334
+A +PYR+S LT LL+E+LGG +KT++IA ISP + +ETLSTL YA RAK
Sbjct: 307 -------RAPHVPYRESKLTRLLQESLGGRTKTSIIATISPGHKDIEETLSTLEYAHRAK 359
Query: 335 QIVCKAIVNEDAN 347
I K VN+
Sbjct: 360 NIQNKPEVNQKLT 372
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics,
structural genomics consortium, SGC, contractIle
protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Length = 358
Score = 447 bits (1151), Expect = e-156
Identities = 109/361 (30%), Positives = 167/361 (46%), Gaps = 51/361 (14%)
Query: 2 SSVKVAVRVRPFNNREIS----RDCKSIIEMTGNTTVIINPKLPPESKDTHKNFNFDYSY 57
V VRV+P ++ D K I++ + ++ T +F D
Sbjct: 23 KKVHAFVRVKPTDDFAHEMIRYGDDKRSIDIHLKKDIRRGVV---NNQQTDWSFKLDGVL 79
Query: 58 YSHDPSASNFATQAMVYSDIGEEMLEHAFEGYNVCIFAYGQTGAGKSYTMMGRQEVEGEE 117
+ A+Q +VY + ++++ A +GYN I YGQTGAGK+YTMMG E
Sbjct: 80 --------HDASQDLVYETVAKDVVSQALDGYNGTIMCYGQTGAGKTYTMMGATENYKHR 131
Query: 118 GIIPMICQDLFKRIKDTTN----------------------DKLKSRWKNSNLRVREHPL 155
GI+P Q +F+ I++ + + + E+P
Sbjct: 132 GILPRALQQVFRMIEERPTHAITVRVSYLEIYNESLFDLLSTLPYVGPSVTPMTIVENPQ 191
Query: 156 LGPYVEDLSKLAVTCYRDIHDLIDEGNKARTVAATNMNETSSRSHAVFTIFFTQQAVDDM 215
G +++ LS + D L+ EG R +A+ MN+ SSRSH +FTI+ +
Sbjct: 192 -GVFIKGLSVHLTSQEEDAFSLLFEGETNRIIASHTMNKNSSRSHCIFTIYLEAHSRTLS 250
Query: 216 TDLTTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEISAVQH 275
+ SKI+LVDLAGSER +G++G LKE INKSL+ L + I AL +
Sbjct: 251 EE--KYITSKINLVDLAGSERLGKSGSEGQVLKEATYINKSLSFLEQAIIALGD------ 302
Query: 276 VAKKKKKADFIPYRDSVLTWLLRENLGGNSKTAMIAAISPADINYDETLSTLRYADRAKQ 335
+K D IP+R LT L+++LGGN ++ I +ETLS+LR+A R K
Sbjct: 303 -----QKRDHIPFRQCKLTHALKDSLGGNCNMVLVTNIYGEAAQLEETLSSLRFASRMKL 357
Query: 336 I 336
+
Sbjct: 358 V 358
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics,
structural genomics consortium, SGC, structural protein;
HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Length = 387
Score = 445 bits (1146), Expect = e-155
Identities = 112/364 (30%), Positives = 167/364 (45%), Gaps = 53/364 (14%)
Query: 2 SSVKVAVRVRPFNNREISRDCKSIIEMTGNTTVIINP---KLPPESKDTHKNFNFDYSYY 58
+ V VR RP N +E+++ +I + ++++ K+ ++ F FD+++
Sbjct: 51 HRICVCVRKRPLNKQELAKKEIDVISIPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAF- 109
Query: 59 SHDPSASNFATQAMVYSDIGEEMLEHAFEGYNVCIFAYGQTGAGKSYTMMGRQEVEGEE- 117
D +A + +VY +++ FEG FAYGQTG+GK++TM G + +
Sbjct: 110 --DETA----SNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKAQNA 163
Query: 118 --GIIPMICQDLFKRIKDTTNDKLKSR-----------------WKNSNLRVREHPLLGP 158
GI M +D+F KL K + LRV E
Sbjct: 164 SKGIYAMASRDVFLLKNQPCYRKLGLEVYVTFFEIYNGKLFDLLNKKAKLRVLEDGKQQV 223
Query: 159 YVEDLSKLAVTCYRDIHDLIDEGNKARTVAATNMNETSSRSHAVFTIFFTQQAVDDMTDL 218
V L + V D+ +ID G+ RT T N SSRSHA F I +
Sbjct: 224 QVVGLQEHLVNSADDVIKMIDMGSACRTSGQTFANSNSSRSHACFQIILRAK-------- 275
Query: 219 TTEKVSKISLVDLAGSERADSTGAKGTRLK-EGANINKSLTTLGKVISALAEISAVQHVA 277
K SLVDLAG+ER T + + + EGA INKSL L + I AL +
Sbjct: 276 -GRMHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQ-------- 326
Query: 278 KKKKKADFIPYRDSVLTWLLREN-LGGNSKTAMIAAISPADINYDETLSTLRYADRAKQI 336
P+R+S LT +LR++ +G NS+T MIA ISP + + TL+TLRYADR K++
Sbjct: 327 ----NKAHTPFRESKLTQVLRDSFIGENSRTCMIATISPGISSCEYTLNTLRYADRVKEL 382
Query: 337 VCKA 340
+
Sbjct: 383 SPHS 386
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P;
HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB:
1v8j_A* 2gry_A*
Length = 410
Score = 443 bits (1143), Expect = e-154
Identities = 112/367 (30%), Positives = 170/367 (46%), Gaps = 53/367 (14%)
Query: 2 SSVKVAVRVRPFNNREISRDCKSIIEMTGNTTVIINP---KLPPESKDTHKNFNFDYSYY 58
+ V VR RP N +E+++ +I + ++++ K+ ++ F FD+++
Sbjct: 71 HRICVCVRKRPLNKQELAKKEIDVISVPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAF- 129
Query: 59 SHDPSASNFATQAMVYSDIGEEMLEHAFEGYNVCIFAYGQTGAGKSYTMMGRQEVEGEE- 117
D +A + +VY +++ FEG FAYGQTG+GK++TM G + +
Sbjct: 130 --DETA----SNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQNA 183
Query: 118 --GIIPMICQDLFKRIKDTTNDKLK-----SRW------------KNSNLRVREHPLLGP 158
GI M +D+F L + + K + LRV E
Sbjct: 184 SKGIYAMASRDVFLLKNQPRYRNLNLEVYVTFFEIYNGKVFDLLNKKAKLRVLEDSRQQV 243
Query: 159 YVEDLSKLAVTCYRDIHDLIDEGNKARTVAATNMNETSSRSHAVFTIFFTQQAVDDMTDL 218
V L + VTC D+ +I+ G+ RT T N SSRSHA F I +
Sbjct: 244 QVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLRTK-------- 295
Query: 219 TTEKVSKISLVDLAGSERADSTGAKGTRLK-EGANINKSLTTLGKVISALAEISAVQHVA 277
K SLVDLAG+ER T + + + EGA INKSL L + I AL +
Sbjct: 296 -GRLHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQ-------- 346
Query: 278 KKKKKADFIPYRDSVLTWLLREN-LGGNSKTAMIAAISPADINYDETLSTLRYADRAKQI 336
P+R+S LT +LR++ +G NS+T MIA ISP + + TL+TLRYADR K++
Sbjct: 347 ----NKAHTPFRESKLTQVLRDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRVKEL 402
Query: 337 VCKAIVN 343
+
Sbjct: 403 SHHHHHH 409
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing
nucleosi triphosphate hydrolases, microtubule motor
protein; HET: ADP; 2.35A {Ashbya gossypii}
Length = 349
Score = 435 bits (1120), Expect = e-152
Identities = 111/369 (30%), Positives = 175/369 (47%), Gaps = 57/369 (15%)
Query: 3 SVKVAVRVRPFNNREISRDCKSIIEMTGNTTVIINPKLP-PESKDTHKNFNFDYSYYSHD 61
+++V RVRP E +IE + + E + NF FD + +
Sbjct: 6 NIRVYCRVRPPLLNEPQDMSHILIEKFNEAKGAQSLTINRNEGRILSYNFQFDMIF---E 62
Query: 62 PSASNFATQAMVYSDIGEEMLEHAFEGYNVCIFAYGQTGAGKSYTMMGRQEVEGEEGIIP 121
PS T ++ +I + +++ + +GYNVCIFAYGQTG+GK+YTM+ +G+IP
Sbjct: 63 PSH----TNKEIFEEIRQ-LVQSSLDGYNVCIFAYGQTGSGKTYTMLN-----AGDGMIP 112
Query: 122 MICQDLFKRI-----------------------------KDTTNDKLKSRWKNSNLRVR- 151
M +FK ++D + + +R
Sbjct: 113 MTLSHIFKWTANLKERGWNYEMECEYIEIYNETILDLLRDFKSHDNIDEILDSQKHDIRH 172
Query: 152 EHPLLGPYVEDLSKLAVTCYRDIHDLIDEGNKARTVAATNMNETSSRSHAVFTIFFTQQA 211
+H G Y+ +++++ +T + ++ + +K R+ AAT NE SSRSH+VF +
Sbjct: 173 DHEKQGTYITNVTRMKMTSTSQVDTILKKASKMRSTAATRSNERSSRSHSVFMVHING-- 230
Query: 212 VDDMTDLTTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEIS 271
+ T K++LVDLAGSER +S+ G RL+E NINKSL+ LG VI AL
Sbjct: 231 RNLHTG--ETSQGKLNLVDLAGSERINSSAVTGERLRETQNINKSLSCLGDVIYALNT-- 286
Query: 272 AVQHVAKKKKKADFIPYRDSVLTWLLRENLGGNSKTAMIAAISPADINYDETLSTLRYAD 331
+IP+R+S LT+LL+ +L G+SKT M I P + ETL++LR+A
Sbjct: 287 -------PDAGKRYIPFRNSKLTYLLQYSLVGDSKTLMFVNIPPDPNHISETLNSLRFAS 339
Query: 332 RAKQIVCKA 340
+
Sbjct: 340 KVNSTKIAK 348
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport
protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Length = 360
Score = 434 bits (1118), Expect = e-151
Identities = 103/377 (27%), Positives = 157/377 (41%), Gaps = 49/377 (12%)
Query: 4 VKVAVRVRPFNNREISRDCKSIIEMTGNTTVIINP---KLPPESKDTHKNFNFDYSYYSH 60
+KV VR RP + E + II + N T+ I+ K+ F D +
Sbjct: 2 IKVVVRKRPLSELEKKKKDSDIITVKNNCTLYIDEPRYKVDMTKYIERHEFIVDKVFDDT 61
Query: 61 DPSASNFATQAMVYSDIGEEMLEHAFE-GYNVCIFAYGQTGAGKSYTMMGRQEVEGEE-- 117
VY + + ++ +E G FAYGQTG+GK+YTM+G Q +
Sbjct: 62 -------VDNFTVYENTIKPLIIDLYENGCVCSCFAYGQTGSGKTYTMLGSQPYGQSDTP 114
Query: 118 GIIPMICQDLFKRIKDTTNDKLKSRW----------------KNSNLRVREHPLLGPYVE 161
GI D+F + D K + K + E+ V+
Sbjct: 115 GIFQYAAGDIFTFLNIYDKDNTKGIFISFYEIYCGKLYDLLQKRKMVAALENGKKEVVVK 174
Query: 162 DLSKLAVTCYRDIHDLIDEGNKARTVAATNMNETSSRSHAVFTIFFTQQAVDDMTDLTTE 221
DL L V ++ + +G R + + N+ SSRSHA+ I
Sbjct: 175 DLKILRVLTKEELILKMIDGVLLRKIGVNSQNDESSRSHAILNIDLKDIN-------KNT 227
Query: 222 KVSKISLVDLAGSERADSTGAKGTRLK-EGANINKSLTTLGKVISALAEISAVQHVAKKK 280
+ KI+ +DLAGSER T ++ + + +GANIN+SL L + I A+
Sbjct: 228 SLGKIAFIDLAGSERGADTVSQNKQTQTDGANINRSLLALKECIRAMDS----------- 276
Query: 281 KKADFIPYRDSVLTWLLRENLGGNSKTAMIAAISPADINYDETLSTLRYADRAKQIVCKA 340
+ IP+RDS LT +LR+ G SK+ MIA ISP ++TL+TLRY+ R K
Sbjct: 277 -DKNHIPFRDSELTKVLRDIFVGKSKSIMIANISPTISCCEQTLNTLRYSSRVKNKGNSK 335
Query: 341 IVNEDANAKLIRELKEE 357
+ + L+
Sbjct: 336 LEGKPIPNPLLGLDSSR 352
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11,
conformation, nucleotide, ATP-binding, microtubule,
motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP:
c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Length = 369
Score = 426 bits (1097), Expect = e-148
Identities = 123/393 (31%), Positives = 195/393 (49%), Gaps = 58/393 (14%)
Query: 3 SVKVAVRVRPFNNREISRDCKSIIEMTGNTTVIINPKLPPESKDTHKNFNFDYSYYSHDP 62
++V R+RP +EI ++ I TV D K +D + D
Sbjct: 6 KIRVYCRLRPLCEKEIIAKERNAIRSVDEFTVEH-----LWKDDKAKQHMYDRVF---DG 57
Query: 63 SASNFATQAMVYSDIGEEMLEHAFEGYNVCIFAYGQTGAGKSYTMMGRQEVEGEEGIIPM 122
+A TQ V+ D + +++ A +GYNVCIFAYGQTG+GK++T+ G + G+ P
Sbjct: 58 NA----TQDDVFEDT-KYLVQSAVDGYNVCIFAYGQTGSGKTFTIYG---ADSNPGLTPR 109
Query: 123 ICQDLFKRIKDTT---------------NDKL-----KSRWKNSNLRVREHPLLGPYVED 162
+LF+ +K + D L + K L +++ VE+
Sbjct: 110 AMSELFRIMKKDSNKFSFSLKAYMVELYQDTLVDLLLPKQAKRLKLDIKKDSKGMVSVEN 169
Query: 163 LSKLAVTCYRDIHDLIDEGNKARTVAATNMNETSSRSHAVFTIFFTQQAVDDMTDLTTE- 221
++ ++++ Y ++ +I G++ R T MNE SSRSH + ++ T+L T+
Sbjct: 170 VTVVSISTYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIES------TNLQTQA 223
Query: 222 -KVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEISAVQHVAKKK 280
K+S VDLAGSER +G+ G +LKE +INKSL+ LG VISAL+
Sbjct: 224 IARGKLSFVDLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVISALSS----------- 272
Query: 281 KKADFIPYRDSVLTWLLRENLGGNSKTAMIAAISPADINYDETLSTLRYADRAKQIVCKA 340
IPYR+ LT L+ ++LGGN+KT M ISPA+ N DET ++L YA R + IV
Sbjct: 273 -GNQHIPYRNHKLTMLMSDSLGGNAKTLMFVNISPAESNLDETHNSLTYASRVRSIVNDP 331
Query: 341 IVNEDANAKLIRELKEEIQRLRDLLKQEGIEVQ 373
N +K + LK+ + ++ ++G + +
Sbjct: 332 SKNVS--SKEVARLKKLVSYWKEQAGRKGDDEE 362
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein,
microtubinding proteinbule, contractIle protein; HET:
ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9
PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Length = 347
Score = 395 bits (1016), Expect = e-136
Identities = 102/370 (27%), Positives = 169/370 (45%), Gaps = 60/370 (16%)
Query: 3 SVKVAVRVRPFNNREISRDCK--SIIEMTGNTTVIINPKLPPESKDTHKNFNFDYSYYSH 60
+++V R+RP + D ++ E N+ V ++ F FD +
Sbjct: 4 NIRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIF--- 60
Query: 61 DPSASNFATQAMVYSDIGEEMLEHAFEGYNVCIFAYGQTGAGKSYTMMGRQEVEGEEGII 120
D T V+ ++G+ +++ + +GYNVCIFAYGQTG+GK++TM+ +GII
Sbjct: 61 DQQD----TNVDVFKEVGQ-LVQSSLDGYNVCIFAYGQTGSGKTFTMLN-----PGDGII 110
Query: 121 PMICQDLFKRIK---------------------------DTTNDKLKSRWKNSNLRVREH 153
P +F I + N+ + +R
Sbjct: 111 PSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHD 170
Query: 154 P-LLGPYVEDLSKLAVTCYRDIHDLIDEGNKARTVAATNMNETSSRSHAVFTIFFTQQAV 212
+ +++ + + ++ + NK R+ A+T NE SS SH++F I +
Sbjct: 171 QETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSASHSIFIIHLSG--- 227
Query: 213 DDMTDLTTE--KVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEI 270
++ T ++LVDLAGSER + + G RL+E NINKSL+ LG VI AL +
Sbjct: 228 ---SNAKTGAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQ- 283
Query: 271 SAVQHVAKKKKKADFIPYRDSVLTWLLRENLGGNSKTAMIAAISPADINYDETLSTLRYA 330
IP+R+S LT+LL+ +L G+SKT M ISP+ + +ETL++LR+A
Sbjct: 284 --------PDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFA 335
Query: 331 DRAKQIVCKA 340
+ +
Sbjct: 336 SKVNSTRLVS 345
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor
domain, ADP, binding, cell cycle, cell division,
endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Length = 376
Score = 387 bits (997), Expect = e-133
Identities = 107/377 (28%), Positives = 168/377 (44%), Gaps = 68/377 (18%)
Query: 3 SVKVAVRVRPFNNREISRDCKSIIEMTGNTTVIINPK--------------LPPESKDTH 48
+++V RVRP E + ++ +G P +
Sbjct: 23 NIRVFCRVRPVLPGEPTPPPGLLLFPSGPGGPSDPPTRLSLSRSDERRGTLSGAPAPPPR 82
Query: 49 KNFNFDYSYYSHDPSASNFATQAMVYSDIGEEMLEHAFEGYNVCIFAYGQTGAGKSYTMM 108
+F+FD + P + Q V+ +I +++ A +GY VCIFAYGQTG+GK++TM
Sbjct: 83 HDFSFDRVF---PPGS----GQDEVFEEIAM-LVQSALDGYPVCIFAYGQTGSGKTFTME 134
Query: 109 GRQEVEGEE-GIIPMICQDLFKRIKDTTNDKLK-----------------------SRWK 144
G + + G+IP + LF ++ + + +
Sbjct: 135 GGPGGDPQLEGLIPRALRHLFSVAQELSGQGWTYSFVASYVEIYNETVRDLLATGTRKGQ 194
Query: 145 NSNLRVREHP--LLGPYVEDLSKLAVTCYRDIHDLIDEGNKARTVAATNMNETSSRSHAV 202
+R V + + V+C +++ L+ + R VA T NE SSRSH+V
Sbjct: 195 GGECEIRRAGPGSEELTVTNARYVPVSCEKEVDALLHLARQNRAVARTAQNERSSRSHSV 254
Query: 203 FTIFFTQQAVDDMTDLTTEKVSKISLVDLAGSERADSTGAKGT----RLKEGANINKSLT 258
F + + + + +SLVDLAGSER D A G RL+E IN SL+
Sbjct: 255 FQLQISG--EHSSRG--LQCGAPLSLVDLAGSERLDPGLALGPGERERLRETQAINSSLS 310
Query: 259 TLGKVISALAEISAVQHVAKKKKKADFIPYRDSVLTWLLRENLGGNSKTAMIAAISPADI 318
TLG VI AL+ K +PYR+S LT+LL+ +LGG++K M ISP +
Sbjct: 311 TLGLVIMALSN------------KESHVPYRNSKLTYLLQNSLGGSAKMLMFVNISPLEE 358
Query: 319 NYDETLSTLRYADRAKQ 335
N E+L++LR+A + Q
Sbjct: 359 NVSESLNSLRFASKVNQ 375
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural
genomics, structur Al genomics consortium, SGC; HET:
ADP; 1.85A {Homo sapiens}
Length = 330
Score = 380 bits (978), Expect = e-131
Identities = 113/357 (31%), Positives = 178/357 (49%), Gaps = 56/357 (15%)
Query: 3 SVKVAVRVRPFNNREISR-DCKSIIEMTGNTTVIINPKLPPESKDTHKNFNFDYSYYSHD 61
+++V RVRP + + + + + II+ K +F D +
Sbjct: 5 NIRVIARVRPVTKEDGEGPEATNAVTFDADDDSIIHLL----HKGKPVSFELDKVF---S 57
Query: 62 PSASNFATQAMVYSDIGEEMLEHAFEGYNVCIFAYGQTGAGKSYTMMGRQEVEGEEGIIP 121
P A +Q V+ ++ + ++ +G+NVCIFAYGQTGAGK+YTM G E GI
Sbjct: 58 PQA----SQQDVFQEV-QALVTSCIDGFNVCIFAYGQTGAGKTYTMEGTAE---NPGINQ 109
Query: 122 MICQDLFKRIKDTT---------------NDKL-----KSRWKNSNLRVREHPLLGPYVE 161
Q LF +++ N+ L K + +R+ YV
Sbjct: 110 RALQLLFSEVQEKASDWEYTITVSAAEIYNEVLRDLLGKEPQEKLEIRLCPDGSGQLYVP 169
Query: 162 DLSKLAVTCYRDIHDLIDEGNKARTVAATNMNETSSRSHAVFTIFFTQQAVDDMTDLTTE 221
L++ V DI+ + + G+ RT TN+NE SSRSHA+ + D +T
Sbjct: 170 GLTEFQVQSVDDINKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVRG------VDCSTG 223
Query: 222 --KVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEISAVQHVAKK 279
K++LVDLAGSER +GA+G+RL+E +INKSL+ LG VI+AL
Sbjct: 224 LRTTGKLNLVDLAGSERVGKSGAEGSRLREAQHINKSLSALGDVIAALRS---------- 273
Query: 280 KKKADFIPYRDSVLTWLLRENLGGNSKTAMIAAISPADINYDETLSTLRYADRAKQI 336
+ +P+R+S LT+LL+++L G+SKT M+ +SP + N ETL +L++A+R + +
Sbjct: 274 --RQGHVPFRNSKLTYLLQDSLSGDSKTLMVVQVSPVEKNTSETLYSLKFAERVRSV 328
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor
homology domain, karyog mitosis, microtubules; HET: ADP
EBC; 2.30A {Saccharomyces cerevisiae}
Length = 403
Score = 375 bits (966), Expect = e-128
Identities = 102/368 (27%), Positives = 170/368 (46%), Gaps = 56/368 (15%)
Query: 3 SVKVAVRVRPFNNREISRDCK--SIIEMTGNTTVIINPKLPPESKDTHKNFNFDYSYYSH 60
+++V +R+RP + D ++ E N+ V ++ F FD +
Sbjct: 60 NIRVYLRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIF--- 116
Query: 61 DPSASNFATQAMVYSDIGEEMLEHAFEGYNVCIFAYGQTGAGKSYTMMGRQEVEGEEGII 120
D T V+ ++G+ +++ + +GYNV IFAYGQTG+GK++TM+ +GII
Sbjct: 117 DQQD----TNVDVFKEVGQ-LVQSSLDGYNVAIFAYGQTGSGKTFTMLN-----PGDGII 166
Query: 121 PMICQDLFKRIK---------------------------DTTNDKLKSRWKNSNLRVREH 153
P +F I + N+ + +R
Sbjct: 167 PSTISHIFNWINKLKTKGWDYKVNAEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHD 226
Query: 154 P-LLGPYVEDLSKLAVTCYRDIHDLIDEGNKARTVAATNMNETSSRSHAVFTIFFTQQAV 212
+ +++ + + + ++ + NK R+ A+T NE SSRSH++F I +
Sbjct: 227 QETKTTTITNVTSVKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSG--S 284
Query: 213 DDMTDLTTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEISA 272
+ T ++LVDLAGSER + + G RL+E NINKSL+ LG VI AL +
Sbjct: 285 NAKTG--AHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSALGDVIHALGQ--- 339
Query: 273 VQHVAKKKKKADFIPYRDSVLTWLLRENLGGNSKTAMIAAISPADINYDETLSTLRYADR 332
IP+R+S LT+LL+ +L G+SKT M ISP+ + +ETL++LR+A +
Sbjct: 340 ------PDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASK 393
Query: 333 AKQIVCKA 340
+
Sbjct: 394 VNSTRLVS 401
>3u06_A Protein claret segregational; motor domain, stalk rotation, power
stroke, kinesin-14, MICR binding, NCD, transport,
molecular motor; HET: ADP GOL; 2.35A {Drosophila
melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Length = 412
Score = 373 bits (959), Expect = e-127
Identities = 113/376 (30%), Positives = 171/376 (45%), Gaps = 52/376 (13%)
Query: 3 SVKVAVRVRPFNNREISRDCKSIIEMTGNTTVIINPKLPPESKDTHKNFNFDYSYYSHDP 62
+++V R+RP E +R C + +T + + +SK + F+FD + P
Sbjct: 60 NIRVFCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVF---HP 116
Query: 63 SASNFATQAMVYSDIGEEMLEHAFEGYNVCIFAYGQTGAGKSYTMMGRQEVEGEEGIIPM 122
+ +Q+ ++ + +++ A +GYN+CIFAYGQTG+GK+YTM G V G+IP
Sbjct: 117 LS----SQSDIFEMV-SPLIQSALDGYNICIFAYGQTGSGKTYTMDG---VPESVGVIPR 168
Query: 123 ICQDLFKRIK--------------------DTTNDKLKSRWKNSNLRVREHPLLGPYVED 162
LF I+ + D L + K+ +R+ ++ YV +
Sbjct: 169 TVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKNDIYVSN 228
Query: 163 LSKLAVTCYRDIHDLIDEGNKARTVAATNMNETSSRSHAVFTIFFTQQAVDDMTDLTTEK 222
+++ V + L+ R A+T NE SSRSHAV +
Sbjct: 229 ITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKL--ELIGRHAEKQEI--S 284
Query: 223 VSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEISAVQHVAKKKKK 282
V I+LVDLAGSE TR+ E NIN+SL+ L VI AL + K
Sbjct: 285 VGSINLVDLAGSES----PKTSTRMTETKNINRSLSELTNVILALLQ------------K 328
Query: 283 ADFIPYRDSVLTWLLRENLGGNSKTAMIAAISPADINYDETLSTLRYADRAKQIVC-KAI 341
D IPYR+S LT LL +LGGNSKT M +SP + E++ +LR+A KA
Sbjct: 329 QDHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCKMTKAK 388
Query: 342 VNEDANAKLIRELKEE 357
N N + +
Sbjct: 389 RNRYLNNSVANSSTQS 404
>2kin_B Kinesin; motor protein, cytoskeleton; HET: ADP; 2.00A {Rattus
norvegicus} SCOP: c.37.1.9
Length = 100
Score = 150 bits (382), Expect = 7e-45
Identities = 42/109 (38%), Positives = 61/109 (55%), Gaps = 12/109 (11%)
Query: 252 NINKSLTTLGKVISALAEISAVQHVAKKKKKADFIPYRDSVLTWLLRENLGGNSKTAMIA 311
NINKSL+ LG VISALAE +PYRDS +T +L+++L GN +T ++
Sbjct: 3 NINKSLSALGNVISALAE-----------GTKTHVPYRDSKMTRILQDSLDGNCRTTIVI 51
Query: 312 AISPADINYDETLSTLRYADRAKQIVCKAIVNEDANAK-LIRELKEEIQ 359
SP+ N ET STL + RAK I VN + A+ ++ ++E +
Sbjct: 52 CCSPSVFNEAETKSTLMFGQRAKTIKNTVSVNLELTAEEWKKKYEKEKE 100
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A
{Rattus norvegicus} SCOP: c.37.1.9
Length = 117
Score = 150 bits (382), Expect = 1e-44
Identities = 42/115 (36%), Positives = 63/115 (54%), Gaps = 12/115 (10%)
Query: 254 NKSLTTLGKVISALAEISAVQHVAKKKKKADFIPYRDSVLTWLLRENLGGNSKTAMIAAI 313
NKSL+ LG VISALAE +PYRDS +T +L+++LGGN +T ++
Sbjct: 1 NKSLSALGNVISALAE-----------GTKTHVPYRDSKMTRILQDSLGGNCRTTIVICC 49
Query: 314 SPADINYDETLSTLRYADRAKQIVCKAIVNEDANAK-LIRELKEEIQRLRDLLKQ 367
SP+ N ET STL + RAK I VN + A+ ++ ++E ++ + L
Sbjct: 50 SPSVFNEAETKSTLMFGQRAKTIKNTVSVNLELTAEEWKKKYEKEKEKNKALKSV 104
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 62.2 bits (150), Expect = 2e-10
Identities = 74/547 (13%), Positives = 157/547 (28%), Gaps = 170/547 (31%)
Query: 16 REI--SRDCKSIIEMTGNTT----VIINPKLPPES------KDTH-KNFNFDYSYYSHDP 62
+ I + II + + E ++ N+ F S +
Sbjct: 43 KSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQ 102
Query: 63 SASNFATQAMVYSDIGEEMLE--HAFEGYNVC--------------------IFAYGQTG 100
+ T+ +Y + + + F YNV + G G
Sbjct: 103 RQPSMMTR--MYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLG 160
Query: 101 AGKSY------------TMMGRQ-------EVEGEEGIIPMICQDLFKRIKDTTN----- 136
+GK++ M + E ++ M+ Q L +I
Sbjct: 161 SGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEML-QKLLYQIDPNWTSRSDH 219
Query: 137 -DKLKSRWKNSNLRVREHPLLGPYVEDLSKLAVTCYRDIHDLIDEGNKARTVAATNMNET 195
+K R + +R PY L L ++ + A+ A N++
Sbjct: 220 SSNIKLRIHSIQAELRRLLKSKPYENCLLVL-----LNVQN-------AKAWNAFNLS-- 265
Query: 196 SSRSHAVFTIFFTQQAVDDMTDLTTEKVSKISLVDLA-GSERADSTG--AKGTRLKEGAN 252
+ I T + L+ + ISL + + K +
Sbjct: 266 -CK------ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP--- 315
Query: 253 INKSLTTLGKVISALAEISAVQHVAKKKKKADFIPYRDSVLTWLLRENLGGNSKTAMI-- 310
+ L + +S + A+ I RD + TW +++ + T +I
Sbjct: 316 --QDLPREVLTTNPRR-LSII---------AESI--RDGLATWDNWKHVNCDKLTTIIES 361
Query: 311 --AAISPADI--NYDE-------------TLSTLRYADRAKQIVCKAIVNEDANAKLI-R 352
+ PA+ +D LS + + + +VN+ L+ +
Sbjct: 362 SLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDV--IKSDVMVVVNKLHKYSLVEK 419
Query: 353 ELKEEIQRLRDLLKQEGIEVQEASELIMSKMAETPNAGENVDWD---------------- 396
+ KE + + + ++++ L + + N + D D
Sbjct: 420 QPKESTISIPSIYLELKVKLENEYAL-HRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIG 478
Query: 397 --FAQVELLEKQG------VDLKQEMQQRLR-----------------DLEEQYKREKNE 431
+E E+ +D + ++Q++R L + YK +
Sbjct: 479 HHLKNIEHPERMTLFRMVFLDFRF-LEQKIRHDSTAWNASGSILNTLQQL-KFYKPYICD 536
Query: 432 ADQAFEQ 438
D +E+
Sbjct: 537 NDPKYER 543
Score = 56.4 bits (135), Expect = 1e-08
Identities = 62/386 (16%), Positives = 116/386 (30%), Gaps = 131/386 (33%)
Query: 159 YVEDLSKLAVTCYRDIHDLIDEGNKARTVAATNMNETSSRSHAVFTIFFTQQA------V 212
V+D+ K ++ +I +I + S + +F ++Q V
Sbjct: 37 DVQDMPKSILS-KEEIDHIIMSKDAV------------SGTLRLFWTLLSKQEEMVQKFV 83
Query: 213 DD---------MTDLTTEKVSKISLVDLAGSERADSTG-----AKG--TRLKEGANINKS 256
++ M+ + TE+ + + +R AK +RL+ + ++
Sbjct: 84 EEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQA 143
Query: 257 LTTL--------------GKVISALAEISAVQHVAKKKKKADFIPYRDSVLTWLLRENLG 302
L L GK + +A + K + K DF + WL NL
Sbjct: 144 LLELRPAKNVLIDGVLGSGK--TWVA-LDVCLS-YKVQCKMDFKIF------WL---NLK 190
Query: 303 G-NSKTAMIAAISPADINYDETLSTLRYADRAKQIVCKAIVNEDANAKLIRELKEEIQRL 361
NS ++ E L L Y QI D ++ + + L
Sbjct: 191 NCNSPETVL-----------EMLQKLLY-----QIDPNWTSRSDHSSNIKLRIHSIQAEL 234
Query: 362 RDLLKQEG------I--EVQEASEL--------------------IMSKMAETPNAGENV 393
R LLK + + VQ A +S T + ++
Sbjct: 235 RRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHH 294
Query: 394 DWDFAQVELLE-------KQGVDLKQEMQQ-----------RLRDLEEQYKREKNEADQA 435
E+ + DL +E+ +RD + K+
Sbjct: 295 SMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDK 354
Query: 436 FEQQRKSSLRRIS----KQM--KLSI 455
+SSL + ++M +LS+
Sbjct: 355 LTTIIESSLNVLEPAEYRKMFDRLSV 380
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 57.0 bits (137), Expect = 9e-09
Identities = 47/319 (14%), Positives = 87/319 (27%), Gaps = 124/319 (38%)
Query: 24 SIIEMTGNTTVIINPKL------PPESKDTHKNFNFDYSYYSHDPSASNFATQAMVYSDI 77
SI+++ N NP + K +N YS + ++ +I
Sbjct: 1660 SILDIVIN-----NPVNLTIHFGGEKGKRIREN----YSAMIFETIVDGKLKTEKIFKEI 1710
Query: 78 GEEMLEHAFEG--------YN--VCIFAYGQTGAGKSYTMMGRQEVEGEEGIIPMICQDL 127
E + F + ++++ +G+IP
Sbjct: 1711 NEHSTSYTFRSEKGLLSATQFTQPALTLM-------EKAAF--EDLK-SKGLIPA--DAT 1758
Query: 128 F--KRIKDTTNDKLKSRWKNSNLRVREHPLLGPY-----------VEDLSKLAVTCYR-- 172
F H L G Y +E L ++ YR
Sbjct: 1759 FAG------------------------HSL-GEYAALASLADVMSIESLVEV--VFYRGM 1791
Query: 173 DIHDLIDEGNKART---VAATNMNETSSRSHAVFTIFFTQQAVDDMTDLTTEKVSKISLV 229
+ + R+ + A N + F+Q+A+ +V
Sbjct: 1792 TMQVAVPRDELGRSNYGMIAINPGRVA--------ASFSQEALQY-------------VV 1830
Query: 230 DLAGSERADSTGAKGTRLKEGANINKSLTTLGK--VISALAEISAVQHVAK-----KKKK 282
+ G TG L E N N + V + ++ A+ V K +K
Sbjct: 1831 ERVGKR----TG----WLVEIVNYNVE----NQQYVAAG--DLRALDTVTNVLNFIKLQK 1876
Query: 283 ADFIPYRDSVLTWLLRENL 301
D I + S+ + +L
Sbjct: 1877 IDIIELQKSLSLEEVEGHL 1895
Score = 56.2 bits (135), Expect = 2e-08
Identities = 60/330 (18%), Positives = 106/330 (32%), Gaps = 121/330 (36%)
Query: 108 MGRQEVEGEEGIIPMICQDLFKRIKDTTNDKLKSRWKNSNLRVREHP-----LLGPY--- 159
MG + + QD++ R + D + ++ V +P G
Sbjct: 1631 MGMDLYKTSK-----AAQDVWNRADNHFKDTYG--FSILDI-VINNPVNLTIHFGGEKGK 1682
Query: 160 --VEDLSKLAVTCYRDIHDLIDEGNKARTVAATNMNETSSRSHAVFTIF----------- 206
E+ S + + I D G +NE S+ F
Sbjct: 1683 RIRENYSAM---IFETIVD----GKLKTEKIFKEINEHSTS-----YTFRSEKGLLSATQ 1730
Query: 207 FTQQAVDDMTDLTTEKVSKISLVDL--AGSERADSTGAKGTRLKEGANINKSLTTLGKVI 264
FTQ A LT + K + DL G AD+T A G SL G
Sbjct: 1731 FTQPA------LTL--MEKAAFEDLKSKGLIPADATFA-------G----HSL---G--- 1765
Query: 265 SALAEISAVQHVAKKKKKADFIPYRDSVLTWLLR-----------ENLGGNSKTAMIAAI 313
E +A+ + AD + V ++ + G S MI AI
Sbjct: 1766 ----EYAAL--ASL----ADVMSIESLV--EVVFYRGMTMQVAVPRDELGRSNYGMI-AI 1812
Query: 314 SPADINYDETLSTLRY-ADRA-----------------KQIVC----KAIVNEDANAKLI 351
+P + + L+Y +R +Q V +A+ D ++
Sbjct: 1813 NPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRAL---DTVTNVL 1869
Query: 352 RELKEEIQRLRDLLK-QEGIEVQEASELIM 380
+K +Q++ D+++ Q+ + ++E +
Sbjct: 1870 NFIK--LQKI-DIIELQKSLSLEEVEGHLF 1896
Score = 32.7 bits (74), Expect = 0.28
Identities = 35/254 (13%), Positives = 70/254 (27%), Gaps = 110/254 (43%)
Query: 1 MSSVK------VAVRVRPFNNR-------EIS----RDCKSIIEMTGNTTVIINPKLPPE 43
M S+ V V N+ EIS +++ ++G PP+
Sbjct: 338 MLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAK--NLV-VSG----------PPQ 384
Query: 44 S----------------KDTHKN-F-----NFDYSY------YSHDP---SASNFATQAM 72
S D + F F + + H AS+ + +
Sbjct: 385 SLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPF-HSHLLVPASDLINKDL 443
Query: 73 VYSDI---GEEM---LEHAFEGYNVCIFAYGQTGAGKSYTMMGRQEVEGEEGIIPMICQD 126
V +++ +++ + F+G ++ + + G I I
Sbjct: 444 VKNNVSFNAKDIQIPVYDTFDGSDL-------------------RVLSGS--ISERIVDC 482
Query: 127 LF-KRIKDTTNDKLKSRWKNSNLRVREHPL-LGP-YVEDLSKLAVTCYRDIHDLIDEGNK 183
+ + +W+ + H L GP L L H +G
Sbjct: 483 IIRLPV----------KWETTTQFKATHILDFGPGGASGLGVL-------THRNK-DGTG 524
Query: 184 ARTVAATNMNETSS 197
R + A ++
Sbjct: 525 VRVIVAGTLDINPD 538
Score = 30.8 bits (69), Expect = 1.4
Identities = 26/150 (17%), Positives = 46/150 (30%), Gaps = 55/150 (36%)
Query: 276 VAKKK-KKADFIPYRDSVLTWLLRENLGGNSKTAMIAAISPADI--NYDETLSTLRYADR 332
A+ +AD ++ G S DI N L+ ++
Sbjct: 1641 AAQDVWNRAD----------NHFKDTYG----------FSILDIVINNPVNLTIHFGGEK 1680
Query: 333 AKQI-------VCKAIVNEDANA-KLIRELKEEIQRL-----RDLLKQEGIEV-QEASEL 378
K+I + + IV+ K+ +E+ E + LL + Q A
Sbjct: 1681 GKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSA--TQFTQPAL-T 1737
Query: 379 IMSKMAETPNAGENVDWDFAQVELLEKQGV 408
+M K A E L+ +G+
Sbjct: 1738 LMEK---------------AAFEDLKSKGL 1752
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 42.8 bits (100), Expect = 6e-05
Identities = 22/104 (21%), Positives = 39/104 (37%), Gaps = 47/104 (45%)
Query: 351 IRELKEEIQRLRDLLKQEGIEVQEASELIMSKMAETPNAGENVDWDFAQVELLEKQGVDL 410
IR+ +EE QR R ++ +A+ + +
Sbjct: 87 IRKWREE-QRKR-------LQELDAAS--------------------------KVMEQEW 112
Query: 411 KQEMQQRLRDLEEQYKR-----EKN-----EADQAFEQQRKSSL 444
+++ ++ DLEE +R EKN AD+AF QQ + +
Sbjct: 113 REKAKK---DLEEWNQRQSEQVEKNKINNRIADKAFYQQPDADI 153
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 42.8 bits (101), Expect = 2e-04
Identities = 22/118 (18%), Positives = 45/118 (38%), Gaps = 6/118 (5%)
Query: 344 EDANAKLIRELKEEIQRLRDL---LKQEGIEVQEASELIMSKMAETPNAGENVDWDFAQV 400
+ L E ++LR L+ E + A+ ++S E + + +
Sbjct: 948 LEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEK 1007
Query: 401 ELLEKQGVDLKQEMQQRLRDLEE---QYKREKNEADQAFEQQRKSSLRRISKQMKLSI 455
+ +E+ K E +Q + +L+E K EK E ++ Q K + K++
Sbjct: 1008 KTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEET 1065
Score = 33.5 bits (77), Expect = 0.15
Identities = 22/103 (21%), Positives = 39/103 (37%), Gaps = 10/103 (9%)
Query: 348 AKLIRELKEEIQRLRDLLKQEGIEVQEASELIMSKMAETPNAGENVDWDFAQVELLEKQG 407
+ L+EEI +LR L Q E + E ET V L++Q
Sbjct: 983 TNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQ----------LVSELKEQN 1032
Query: 408 VDLKQEMQQRLRDLEEQYKREKNEADQAFEQQRKSSLRRISKQ 450
LK E ++ R + +Q K ++ ++ K ++ +
Sbjct: 1033 TLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQLELDLNDE 1075
Score = 33.2 bits (76), Expect = 0.21
Identities = 16/123 (13%), Positives = 41/123 (33%), Gaps = 19/123 (15%)
Query: 339 KAIVNEDANAKLIRELKEEIQRLR-DLLKQEGIEVQEA-SELIMSKMAETPNAGENVDWD 396
+ + + + L+ + Q A EL K+
Sbjct: 865 HKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEA----------- 913
Query: 397 FAQVELLEKQGVDL---KQEMQQRLRDLEEQYKREKNEAD--QAFEQQRKSSLRRISKQM 451
VE +K + L ++Q+++ + ++YK + + + LR +++
Sbjct: 914 -RSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERL 972
Query: 452 KLS 454
++S
Sbjct: 973 RMS 975
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 36.0 bits (83), Expect = 0.031
Identities = 17/90 (18%), Positives = 38/90 (42%)
Query: 351 IRELKEEIQRLRDLLKQEGIEVQEASELIMSKMAETPNAGENVDWDFAQVELLEKQGVDL 410
+ + +EE+Q L+ E + A + I + + E+++ + A EKQ DL
Sbjct: 1090 LAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDL 1149
Query: 411 KQEMQQRLRDLEEQYKREKNEADQAFEQQR 440
+E++ +LE+ + + +
Sbjct: 1150 SEELEALKTELEDTLDTTATQQELRGSDYK 1179
Score = 32.5 bits (74), Expect = 0.30
Identities = 24/100 (24%), Positives = 44/100 (44%), Gaps = 1/100 (1%)
Query: 348 AKLIRELKEEIQRLRDLLKQEGIEVQEASELIMSKMAETPNAGENVDWDFAQVELLEKQG 407
KL + + I L LK+E QE ++ E+ + E + AQ+ L+ Q
Sbjct: 1031 TKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQL 1090
Query: 408 VDLKQEMQQRLRDLEEQYKREKNEADQAFE-QQRKSSLRR 446
++E+Q L LE++ ++ N + E + S L+
Sbjct: 1091 AKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQE 1130
Score = 31.3 bits (71), Expect = 0.76
Identities = 21/133 (15%), Positives = 53/133 (39%), Gaps = 7/133 (5%)
Query: 327 LRYADRAKQIVCKAIVNEDANAKLIRELKEEIQRLRDLLKQEGIEVQEASELIMSKMAET 386
L+ + +++ K + + + + E++ L Q E E + ++
Sbjct: 850 LKVTRQEEEMQAKDEELQRTKERQQKA-EAELKELEQKHTQLCEEKNLLQEKLQAETELY 908
Query: 387 PNAGENVDWDFAQVELLEKQGVDLKQEMQQRLRDLEEQYKREKNEADQAFEQQRKSSLRR 446
A E A+ + LE+ EM+ R+ + EE+ ++ + E + QQ+ L
Sbjct: 909 AEAEEMRVRLAAKKQELEEI----LHEMEARIEEEEERSQQLQAEKKKM--QQQMLDLEE 962
Query: 447 ISKQMKLSIGRRE 459
++ + + + +
Sbjct: 963 QLEEEEAARQKLQ 975
Score = 30.2 bits (68), Expect = 1.6
Identities = 21/131 (16%), Positives = 52/131 (39%), Gaps = 19/131 (14%)
Query: 344 EDANAKLIRE---LKEEIQRLRDLLKQEGIEVQEASELIMSKMAETPNAGENVDWDFAQV 400
E A KL E +I+++ D + + + ++ + N+ + +
Sbjct: 968 EAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKA 1027
Query: 401 ELLEKQGVDLKQEMQQRLRDLEEQYKREKNEADQAFEQQRK------------SSLRRIS 448
+ L K LK + + + +LE + K+E+ + + +RK + L+
Sbjct: 1028 KNLTK----LKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQI 1083
Query: 449 KQMKLSIGRRE 459
++K + ++E
Sbjct: 1084 AELKAQLAKKE 1094
Score = 28.6 bits (64), Expect = 5.0
Identities = 30/128 (23%), Positives = 59/128 (46%), Gaps = 7/128 (5%)
Query: 328 RYADRAKQIVCKAIVNEDANAKLIRE---LKEEIQRLRDLLKQEGIEVQEASELIMSKMA 384
+ ++ + E +L ++ L EE L++ L+ E EA E+ + A
Sbjct: 861 AKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAA 920
Query: 385 ETPNAGENVDWDFAQVELLEKQGVDLKQE---MQQRLRDLEEQYKREKNEADQAFEQQRK 441
+ E + A++E E++ L+ E MQQ++ DLEEQ + E+ Q + ++
Sbjct: 921 KKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAAR-QKLQLEKV 979
Query: 442 SSLRRISK 449
++ +I K
Sbjct: 980 TADGKIKK 987
>3nk6_A 23S rRNA methyltransferase; nosiheptide, nosiheptide-resistance
methyltransferase, 23S R methyltransferase; 2.00A
{Streptomyces actuosus} PDB: 3nk7_A* 3gyq_A*
Length = 277
Score = 34.5 bits (80), Expect = 0.050
Identities = 7/39 (17%), Positives = 14/39 (35%)
Query: 350 LIRELKEEIQRLRDLLKQEGIEVQEASELIMSKMAETPN 388
L DL +Q I V+ I++++ +
Sbjct: 57 YGSSGTPLDPALLDLCRQREIPVRLIDVSIVNQLFKAER 95
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil
(dimeric, parallel), familial hypertrophic
cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo
sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Length = 129
Score = 31.8 bits (72), Expect = 0.14
Identities = 18/97 (18%), Positives = 48/97 (49%), Gaps = 3/97 (3%)
Query: 348 AKLIRELKEEIQRLRDLLKQEGIEVQEASELIMSKMAETPNAGENVDWDFAQVELLEKQG 407
K + +KEE RL++ L++ +E E ++S + E + V + + E++
Sbjct: 12 EKEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERC 71
Query: 408 VDL---KQEMQQRLRDLEEQYKREKNEADQAFEQQRK 441
L K +++ +++++ ++ + E+ + ++RK
Sbjct: 72 DQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRK 108
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural
genomics, MCSG, S genomics, unknown function; 2.82A
{Synechococcus SP}
Length = 150
Score = 32.3 bits (73), Expect = 0.15
Identities = 25/117 (21%), Positives = 46/117 (39%), Gaps = 6/117 (5%)
Query: 334 KQIVCKAIVNEDANAKLIRELKEEIQRLRDLLKQEGIEVQEASELIMSKMAETPNAGENV 393
+ I +A+V + RE+ I L Q E Q + + + A +
Sbjct: 14 RPITVRAVVTPTWKEEAEREISNGIANADQQLAQLEQEGQTVVDQVRRQSANPLDPRVQ- 72
Query: 394 DWDFAQVELLEKQGVDLKQEM-QQRLRDLEEQYKREKNEADQAFEQQRKSSLRRISK 449
QV +++Q + E+ +Q+ L++Q + + E DQ EQ + S I
Sbjct: 73 ----EQVANIQQQVAGKRSELEEQKRNLLQQQAQVRELEMDQIVEQGQLESSCEIKV 125
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF),
nucleus, coiled coil, structural genomics consortium,
SGC, structural protein; 2.40A {Homo sapiens} PDB:
3tyy_A
Length = 95
Score = 31.1 bits (71), Expect = 0.17
Identities = 11/74 (14%), Positives = 28/74 (37%), Gaps = 6/74 (8%)
Query: 351 IRELKEEIQRLRDLLKQEGIEVQEASELIMSKMAETPNAGENVDWDF-AQVELLEKQGVD 409
+ R + Q+ S + ++ E + + + E++ +
Sbjct: 1 MHHHHHHSSREN----LY-FQGQKESRACLERIQELEDLLAKEKDNSRRMLTDKEREMAE 55
Query: 410 LKQEMQQRLRDLEE 423
++ +MQQ+L D E+
Sbjct: 56 IRDQMQQQLNDYEQ 69
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP
hydrolysis, GDP, GMP, dynamin related, large GTPase
family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens}
SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A*
2bc9_A* 2d4h_A*
Length = 592
Score = 33.4 bits (75), Expect = 0.18
Identities = 15/100 (15%), Positives = 39/100 (39%)
Query: 353 ELKEEIQRLRDLLKQEGIEVQEASELIMSKMAETPNAGENVDWDFAQVELLEKQGVDLKQ 412
+ +E +Q + + + + + K E + A ++L + +Q
Sbjct: 456 QAEEILQTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQ 515
Query: 413 EMQQRLRDLEEQYKREKNEADQAFEQQRKSSLRRISKQMK 452
M+Q+ R +E K+ + + Q K R ++ +++
Sbjct: 516 MMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQ 555
Score = 28.0 bits (61), Expect = 9.0
Identities = 16/100 (16%), Positives = 43/100 (43%), Gaps = 12/100 (12%)
Query: 331 DRAKQIVCKAIVNEDANAKLIRELKEEIQRLRDLLKQEGIEVQEASELIMSKMAETPNAG 390
AK + NE + R +E +++L + ++ + +++ + E ++ +
Sbjct: 501 ASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQ----- 555
Query: 391 ENVDWDFAQVELLEKQGVDLKQEMQQRLRDLEEQYKREKN 430
Q +LL++ + M+ ++DL+ + +R K
Sbjct: 556 -------EQEQLLKEGFQKESRIMKNEIQDLQTKMRRRKA 588
>3o6x_A Glutamine synthetase; type III, beta barrel,dodecamer, ligas; HET:
P3S ADP; 3.50A {Bacteroides fragilis}
Length = 729
Score = 33.0 bits (75), Expect = 0.23
Identities = 19/108 (17%), Positives = 46/108 (42%), Gaps = 7/108 (6%)
Query: 329 YADRAKQIVCKAIVNEDANAKLIRELKEEIQRLR---DLLKQEGIEVQEASELIMSKMAE 385
+ +++ + I ++A ++++E + +R D +E QEA+ ++ +
Sbjct: 500 FKASVDKLMEEGIGKDEAIFRILKENIIASELIRFEGDGYSEE--WKQEAARRGLTNICH 557
Query: 386 TPNAGENVDWDFAQVELLEKQGVDLKQEMQQRLRDLEEQYKREKN-EA 432
P A + D +L + + + E+ RL E+Y + E+
Sbjct: 558 VPEALMHYM-DNQSRAVLIGERIFNETELACRLEVELEKYTMKVQIES 604
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Length = 526
Score = 32.6 bits (74), Expect = 0.26
Identities = 11/98 (11%), Positives = 29/98 (29%)
Query: 344 EDANAKLIRELKEEIQRLRDLLKQEGIEVQEASELIMSKMAETPNAGENVDWDFAQVELL 403
E ++EL++E + LK ++ + + D Q ++L
Sbjct: 92 ERGIQAKLKELEDEQRNELVRLKYNDKIKEKFGKELEEVYNFMNGEANAEIEDEKQFDIL 151
Query: 404 EKQGVDLKQEMQQRLRDLEEQYKREKNEADQAFEQQRK 441
K + + + + + E + +
Sbjct: 152 NKAVTSYNKILTEEDLQMRRLATALQKEIGERTHAETV 189
>2xs1_A Programmed cell death 6-interacting protein; protein
transport-viral protein complex, cell cycle; 2.30A {Homo
sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A
2ojq_A
Length = 704
Score = 31.8 bits (71), Expect = 0.52
Identities = 18/132 (13%), Positives = 34/132 (25%)
Query: 322 ETLSTLRYADRAKQIVCKAIVNEDANAKLIRELKEEIQRLRDLLKQEGIEVQEASELIMS 381
L D + K + +L + L+ E R +L + + E S
Sbjct: 462 RLLDEEEATDNDLRAKFKERWQRTPSNELYKPLRAEGTNFRTVLDKAVQADGQVKECYQS 521
Query: 382 KMAETPNAGENVDWDFAQVELLEKQGVDLKQEMQQRLRDLEEQYKREKNEADQAFEQQRK 441
+ A + E+ L+ L K E + +
Sbjct: 522 HRDTIVLLCKPEPELNAAIPSANPAKTMQGSEVVNVLKSLLSNLDEVKKEREGLENDLKS 581
Query: 442 SSLRRISKQMKL 453
+ SK +
Sbjct: 582 VNFDMTSKFLTA 593
>3d3c_J 30S ribosomal protein S10, N utilization substance protein B;
NUSB, NUSE, phage lambda, lambda N antitermination
antitermination; 2.60A {Escherichia coli} PDB: 2kvq_E
3d3b_J* 3imq_J
Length = 87
Score = 29.3 bits (66), Expect = 0.53
Identities = 12/50 (24%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 1 MSSVKVAVRVRPFNNREISRDCKSIIEMTGNTTVIINPKLP-PESKDTHK 49
M + ++ +R++ F++R I + I+E T + +P P TH
Sbjct: 6 MQNQRIRIRLKAFDHRLIDQATAEIVETAKRTGAQVRGPIPLPTRSRTHL 55
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular
mimicry, translation; 1.81A {Escherichia coli} SCOP:
e.38.1.1 PDB: 1mi6_A 1ml5_Z*
Length = 365
Score = 31.1 bits (71), Expect = 0.69
Identities = 21/111 (18%), Positives = 42/111 (37%), Gaps = 15/111 (13%)
Query: 349 KLIRELKEEIQRLRDLLKQEGIEVQEASELIMSKMAETPNAGENVDWD---FAQVELLEK 405
I++L E LR L + + + E+ + E P+ W+ AQ E+
Sbjct: 9 NRIQDLTERSDVLRGYLDYDAKK-ERLEEV--NAELEQPDV-----WNEPERAQALGKER 60
Query: 406 QG----VDLKQEMQQRLRDLEEQYKREKNEADQAFEQQRKSSLRRISKQMK 452
VD +M+Q L D+ + D+ + + L + +++
Sbjct: 61 SSLEAVVDTLDQMKQGLEDVSGLLELAVEADDEETFNEAVAELDALEEKLA 111
>2ihr_1 Peptide chain release factor 2; mixed alpha-beta, translation;
2.50A {Thermus thermophilus} PDB: 2b9m_Y* 3f1e_X 3f1g_X
2x9r_Y* 2x9t_Y* 2jl5_Y 2jl7_Y 2wh1_Y 2wh3_Y
Length = 365
Score = 30.7 bits (70), Expect = 0.87
Identities = 17/106 (16%), Positives = 40/106 (37%), Gaps = 15/106 (14%)
Query: 351 IRELKEEIQRLRDLLKQEGIEVQEASELIMSKMAETPNAGENVDWD---FAQVELLEKQG 407
+ L + ++ L + E EL + E P+ W+ A+ E
Sbjct: 3 LERLAQRLEGLGGIFDIPQKE-TRLKEL--ERRLEDPSL-----WNDPEAARKVSQEAAR 54
Query: 408 ----VDLKQEMQQRLRDLEEQYKREKNEADQAFEQQRKSSLRRISK 449
VD + ++ L+ L E + E +A + + + + +++ +
Sbjct: 55 LRRTVDTFRSLESDLQGLLELMEELPAEEREALKPELEEAAKKLDE 100
>2xz9_A Phosphoenolpyruvate-protein kinase (PTS system EI component in
bacteria); thermophilic, PEP-utilising enzyme,
transferase; 1.68A {Thermoanaerobacter tengcongensis}
PDB: 2bg5_A 2xz7_A*
Length = 324
Score = 30.6 bits (70), Expect = 1.1
Identities = 8/39 (20%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 351 IRELKEEIQRLRDLLKQEGIEVQEASELIMSKMAETPNA 389
+R+ ++ ++ L +EG++ + ++ + M E P+A
Sbjct: 150 VRKANSILEEVKAELDREGVKYDKEIKVGI--MVEIPSA 186
>3r2c_J Protein NUSE, 30S ribosomal protein S10; cross species
NUSB-NUSE-RNA interaction; HET: PEG; 1.90A {Aquifex
aeolicus} PDB: 3r2d_J
Length = 83
Score = 27.8 bits (62), Expect = 1.7
Identities = 12/50 (24%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 1 MSSVKVAVRVRPFNNREISRDCKSIIEMTGNTTVIINPKLP-PESKDTHK 49
M K+ +++R +++R + + K IIE T ++ +P P K
Sbjct: 1 MEQEKIRIKLRAYDHRLLDQSVKQIIETVKRTGGVVKGPIPLPTRKSEFS 50
>2wqd_A Phosphoenolpyruvate-protein phosphotransferase; kinase, cytoplasm,
transport, magnesium, PEP- utilising enzyme,
phosphotransferase system; 2.40A {Staphylococcus aureus}
PDB: 2hro_A
Length = 572
Score = 29.8 bits (68), Expect = 2.0
Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 351 IRELKEEIQRLRDLLKQEGIEVQEASELIMSKMAETPNA 389
RE K + ++ LK EG ++ + EL + M E P
Sbjct: 401 FREAKAILLEEKENLKNEGHDISDDIELGI--MVEIPAT 437
>2hwg_A Phosphoenolpyruvate-protein phosphotransferase; enzyme I,
phosphoenolpyruvate:sugar phosphotransferase system,
PTS; HET: NEP; 2.70A {Escherichia coli} PDB: 2kx9_A
2xdf_A 2l5h_A
Length = 575
Score = 29.8 bits (68), Expect = 2.2
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 351 IRELKEEIQRLRDLLKQEGIEVQEASELIMSKMAETPNA 389
+R L++EI+ + L+ EG E+ E+ + M ETP A
Sbjct: 399 VRALRKEIEIYKQELRDEGKAFDESIEIGV--MVETPAA 435
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural
genomics, BSGC structure funded by NIH, protein
structure initiative, PSI; HET: GDP; 2.80A {Thermotoga
maritima} SCOP: b.40.4.5 c.37.1.8
Length = 301
Score = 29.4 bits (67), Expect = 2.3
Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Query: 73 VYSDIGEEMLEHAFEGYNVCIFAYGQTGAGKS 104
+ +G E L+ +G + A G +G GKS
Sbjct: 154 AKTGMGIEELKEYLKG-KISTMA-GLSGVGKS 183
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Length = 302
Score = 29.1 bits (66), Expect = 2.8
Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Query: 73 VYSDIGEEMLEHAFEGYNVCIFAYGQTGAGKS 104
+ G + L EG +CI A G +G GKS
Sbjct: 150 AKTGEGIDELVDYLEG-FICILA-GPSGVGKS 179
>1mut_A MUTT, nucleoside triphosphate pyrophosphohydrolase; DNA repair; NMR
{Escherichia coli} SCOP: d.113.1.1 PDB: 1ppx_A* 1pun_A*
1puq_A* 1pus_A* 1tum_A* 3a6s_A* 3a6t_A* 3a6u_A* 3a6v_A*
Length = 129
Score = 28.3 bits (64), Expect = 2.9
Identities = 10/37 (27%), Positives = 14/37 (37%), Gaps = 10/37 (27%)
Query: 343 NEDANAKLIRELKEEIQRLRDLLKQEGIEVQEASELI 379
E ++REL+EE+ GI Q S
Sbjct: 43 GETPEQAVVRELQEEV----------GITPQHFSLFE 69
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with
oligonucleotide binding fold, central GTP binding
domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5
c.37.1.8
Length = 307
Score = 29.1 bits (66), Expect = 3.0
Identities = 9/32 (28%), Positives = 13/32 (40%), Gaps = 2/32 (6%)
Query: 73 VYSDIGEEMLEHAFEGYNVCIFAYGQTGAGKS 104
+ F+ +FA GQ+G GKS
Sbjct: 158 SKDQDSLADIIPHFQD-KTTVFA-GQSGVGKS 187
>1bgx_T TAQ DNA polymerase; DNA polymerase, FAB, PCR, inhibition,
helix-coil dynamics, inhibitor design, complex
(polymerase/inhibitor); 2.30A {Thermus aquaticus} SCOP:
a.60.7.1 c.120.1.2 c.55.3.5 e.8.1.1 PDB: 1cmw_A 1tau_A*
1taq_A*
Length = 832
Score = 29.4 bits (67), Expect = 3.2
Identities = 29/148 (19%), Positives = 55/148 (37%), Gaps = 23/148 (15%)
Query: 280 KKKADFIPYRDSVLTWLLRENLGGNSKTAMIAA--ISPADINYDETLSTLRYADRAKQIV 337
K+ + SVL L M+ A + P++ + RY +
Sbjct: 346 KEARGLLAKDLSVLALREGLGLPPGDDP-MLLAYLLDPSNTTPEGV--ARRYGGEWTEEA 402
Query: 338 C-KAIVNEDANAKLIRELKEEIQRLRDLLKQEGIEVQEASELIMSKMAETPNAGENVDWD 396
+A ++E A L L+ E +RL L ++ +E ++ +++ M E G +D
Sbjct: 403 GERAALSERLFANLWGRLEGE-ERLLWLYRE--VERPLSA--VLAHM-E--ATGVRLD-- 452
Query: 397 FAQVELLEKQGVDLKQEMQQRLRDLEEQ 424
V L E+ + + LE +
Sbjct: 453 ---VAYLRALS----LEVAEEIARLEAE 473
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex,
cytoplasm, ribonucleoprotein, structural protein; 3.50A
{Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Length = 861
Score = 29.0 bits (64), Expect = 3.8
Identities = 18/130 (13%), Positives = 40/130 (30%), Gaps = 1/130 (0%)
Query: 331 DRAKQIVCKAIVNEDANAKLIRE-LKEEIQRLRDLLKQEGIEVQEASELIMSKMAETPNA 389
+ +I+ A+ + + + R + + Q G+ V + + +
Sbjct: 593 KNSARIIRMAVFGFEMSEDTGPDGTLLPKARDQAVFPQNGLVVSSVDVQSVEPVDQRTRD 652
Query: 390 GENVDWDFAQVELLEKQGVDLKQEMQQRLRDLEEQYKREKNEADQAFEQQRKSSLRRISK 449
A Q K E Q+ ++ + +R+K E+ RK L +
Sbjct: 653 ALQRSVQLAIEITTNSQEAAAKHEAQRLEQEARGRLERQKILDQSEAEKARKELLELEAM 712
Query: 450 QMKLSIGRRE 459
M +
Sbjct: 713 SMAVESTGNA 722
>3tbi_B DNA-directed RNA polymerase subunit beta; transcription accessory
protein, transcription; 3.00A {Escherichia coli}
Length = 228
Score = 28.5 bits (64), Expect = 4.3
Identities = 23/113 (20%), Positives = 44/113 (38%), Gaps = 23/113 (20%)
Query: 331 DRAKQIVCKAI--VNEDANAKLIRELKEEIQRLRDLLKQEGIEVQEASELIMSKMAETPN 388
RA +I + +D + +L R+R +L G+E ++ +L +
Sbjct: 114 KRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDR------ 167
Query: 389 AGENVDWDFAQVELLEKQGVDLKQEMQQRLRDLEEQYKREKNEADQAFEQQRK 441
+ G+ +E Q +L L EQY K+E ++ E +R+
Sbjct: 168 --------------WLELGLT-DEEKQNQLEQLAEQYDELKHEFEKKLEAKRR 205
>3gty_X Trigger factor, TF; chaperone-client complex, cell cycle, cell
division, chapero isomerase, rotamase,
ribonucleoprotein, binding; 3.40A {Thermotoga maritima}
PDB: 3gu0_A
Length = 433
Score = 28.8 bits (65), Expect = 4.5
Identities = 16/97 (16%), Positives = 37/97 (38%), Gaps = 4/97 (4%)
Query: 352 RELKEEIQRLRDLLKQEGIEVQEASELIMSKMAETPNAGENVDWDFAQVELLEKQGVDLK 411
+ E I RL+ + E I SE + + +++ D L +++G+ +
Sbjct: 294 ILVNEAINRLKREGRYEQIVSSYESEEKFREELK-ERILDDIKRDRVIEVLAQEKGISVN 352
Query: 412 Q-EMQQRLRDLEEQYKREKNEADQAFEQ--QRKSSLR 445
E+++ +L + + A + + LR
Sbjct: 353 DEELEKEAEELAPFWGISPDRAKSLVKARQDLREELR 389
>3ec2_A DNA replication protein DNAC; helicase loader, replication
initiation factor, ATP-binding, nucleotide-binding; HET:
DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Length = 180
Score = 28.1 bits (63), Expect = 4.7
Identities = 20/113 (17%), Positives = 40/113 (35%), Gaps = 16/113 (14%)
Query: 48 HKNFNFDYSYYSHDPSASNFATQAMVYSDIGEEMLEHAFEGYNVCIFAYGQTGAGKSYTM 107
+ N N D +Y+ + S + V+ + + + G G GK++
Sbjct: 4 YWNANLD-TYHPKNVSQNRALLTIRVF-------VHNFNPEEGKGLTFVGSPGVGKTHLA 55
Query: 108 --MGRQEVE--GEEGIIPMICQDLFKRIKDTTNDKLKSRWKNSNLRVREHPLL 156
+ E G G +DL R+K ++ +++ V P+L
Sbjct: 56 VATLKAIYEKKGIRGYF-FDTKDLIFRLKHLMDEGKDTKFLK---TVLNSPVL 104
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing
cluster, hydrophobic core, contractIle protein; 1.80A
{Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Length = 155
Score = 27.6 bits (61), Expect = 5.0
Identities = 16/96 (16%), Positives = 38/96 (39%), Gaps = 3/96 (3%)
Query: 349 KLIRELKEEIQRLRDLLKQEGIEVQEASELIMSKMAETPNAGENVDWDFAQVELLEKQGV 408
EL+EE++ + + LK + ++ S+ E + + + E E+
Sbjct: 42 GKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVT 101
Query: 409 DLKQEM---QQRLRDLEEQYKREKNEADQAFEQQRK 441
L++ + + L + +YK E Q ++ +
Sbjct: 102 KLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEE 137
>3few_X Colicin S4; cell lysis, Y-RAY, cell killing, immune system; 2.45A
{Escherichia coli}
Length = 505
Score = 28.7 bits (63), Expect = 5.2
Identities = 12/125 (9%), Positives = 39/125 (31%), Gaps = 13/125 (10%)
Query: 346 ANAKLIRELKEEIQRLRDLLKQEGIEVQEASELIMSKMAETPNAGENVDWDFAQ------ 399
K+ + EEI +E +A + + + D
Sbjct: 255 IMDKVDHKTPEEIYEALGFNNEEPQRQNQAKKAAYDVFYSFSMNRDRIQSDVLNKAAEVI 314
Query: 400 ----VELLEKQGV---DLKQEMQQRLRDLEEQYKREKNEADQAFEQQRKSSLRRISKQMK 452
++ + G L +E+ +++ + + R ++A + + + + ++
Sbjct: 315 SDIGNKVGDYLGDAYKSLAREIADDVKNFQGKTIRSYDDAMASLNKVLSNPGFKFNRADS 374
Query: 453 LSIGR 457
++
Sbjct: 375 DALAN 379
>3gwy_A Putative CTP pyrophosphohydrolase; structural genomics, PSI-2,
protein structure INI NEW YORK SGX research center for
structural genomics; 2.00A {Bacteroides fragilis}
Length = 140
Score = 27.6 bits (62), Expect = 5.5
Identities = 7/37 (18%), Positives = 13/37 (35%), Gaps = 10/37 (27%)
Query: 343 NEDANAKLIRELKEEIQRLRDLLKQEGIEVQEASELI 379
E L RE+ EE+ ++ +L+
Sbjct: 46 GESLQEALQREIMEEM----------DYVIEVGEKLL 72
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P;
hydrolase, type IV secretion, conjugation; 2.35A
{Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Length = 392
Score = 28.4 bits (63), Expect = 5.5
Identities = 8/20 (40%), Positives = 10/20 (50%), Gaps = 2/20 (10%)
Query: 89 YNVCIFAYGQTGAGKSYTMM 108
N I + GAGKS+T
Sbjct: 36 SNWTIL--AKPGAGKSFTAK 53
>2y7c_A Type-1 restriction enzyme ecoki specificity prote; transferase;
18.00A {Escherichia coli} PDB: 2y7h_A*
Length = 464
Score = 28.2 bits (63), Expect = 6.3
Identities = 22/136 (16%), Positives = 46/136 (33%), Gaps = 20/136 (14%)
Query: 243 KGTRLKEG----ANINKSLTTLGKVISALAEISAV--QHVAKKKKK----ADFIPYRDSV 292
+ ++ A + S + +GK + + + FI +
Sbjct: 69 ESQKISPEDIVIAMSSGSKSVVGKSAHQHLPFECSFGAFCGVLRPEKLIFSGFIAH--FT 126
Query: 293 LTWLLRENLGGNSKTAMIAAISPADINYDETLSTLRYADRAKQIVCKAIVNE-DANAKLI 351
+ L R + S A I I PA + ++ + A+Q K I + D +
Sbjct: 127 KSSLYRNKISSLSAGANINNIKPASF---DLIN-IPIPPLAEQ---KIIAEKLDTLLAQV 179
Query: 352 RELKEEIQRLRDLLKQ 367
K +++ +LK+
Sbjct: 180 DSTKARFEQIPQILKR 195
>2p4p_A Hypothetical protein HD1797; CORC_HLYC, PFAM: PF03471, structural
GE PSI-2, protein structure initiative, midwest center
for STR genomics; HET: MLY MSE; 1.80A {Haemophilus
ducreyi} SCOP: d.145.1.4
Length = 86
Score = 26.3 bits (59), Expect = 6.8
Identities = 9/55 (16%), Positives = 20/55 (36%), Gaps = 7/55 (12%)
Query: 360 RLRDLLKQEGIEVQEASE-------LIMSKMAETPNAGENVDWDFAQVELLEKQG 407
L D+++ I E +M + P + V +D E+++ +
Sbjct: 18 PLEDVMRALNIHTFPRDENYETIGGFMMYMLRXIPXXTDFVLYDXYXFEIIDTEN 72
>2hvu_A PDCD5-like protein; YMR074CP, solution structure, unknown function;
NMR {Saccharomyces cerevisiae} PDB: 2jxn_A*
Length = 116
Score = 26.8 bits (59), Expect = 7.0
Identities = 1/36 (2%), Positives = 7/36 (19%)
Query: 412 QEMQQRLRDLEEQYKREKNEADQAFEQQRKSSLRRI 447
+++ N +++
Sbjct: 14 AQLKNNSGGTNGDRNSGANNGGGENSAPVGAAIANF 49
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A
{Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Length = 86
Score = 26.0 bits (58), Expect = 7.1
Identities = 11/54 (20%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
Query: 398 AQVELLEKQGVDLKQEMQQRLRDLEEQYKREKNEADQAFEQQRKSSLRRISKQM 451
Q+ L+ Q + +LRDLE+ RE++ + + +++ + + +M
Sbjct: 3 CQLSQLQCQ----LAAKEAKLRDLEDSLARERDTS-RRLLAEKEREMAEMRARM 51
>2rrk_A ORF135, CTP pyrophosphohydrolase; NMR {Escherichia coli}
Length = 140
Score = 27.2 bits (61), Expect = 7.3
Identities = 10/37 (27%), Positives = 15/37 (40%), Gaps = 10/37 (27%)
Query: 343 NEDANAKLIRELKEEIQRLRDLLKQEGIEVQEASELI 379
+E L+REL+EE+ GIE +
Sbjct: 47 DESQRQALVRELREEL----------GIEATVGEYVA 73
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL
helix motif, transcription regulator; 3.20A
{Streptococcus pneumoniae}
Length = 253
Score = 27.6 bits (60), Expect = 7.7
Identities = 17/79 (21%), Positives = 31/79 (39%), Gaps = 7/79 (8%)
Query: 79 EEMLEHAFEGYN-----VCIFAYGQTGAGKSYTMMGRQEVEGEEGIIPMICQDLFKRIKD 133
L G + I GQ+GAGK+ + R + + +G I +I D F+
Sbjct: 16 ARNLRSLTRGKKSSKQPIAILLGGQSGAGKTT--IHRIKQKEFQGNIVIIDGDSFRSQHP 73
Query: 134 TTNDKLKSRWKNSNLRVRE 152
+ + K+S ++
Sbjct: 74 HYLELQQEYGKDSVEYTKD 92
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter
sphaeroides} SCOP: c.37.1.6
Length = 290
Score = 27.7 bits (61), Expect = 7.8
Identities = 15/72 (20%), Positives = 22/72 (30%), Gaps = 3/72 (4%)
Query: 97 GQTGAGKSYTMMGRQEVEGEEGIIP-MICQDLFKRIKDTTNDKLKSRWKNSNLRVREHPL 155
G +GAG S ++ EG+ I D F R R + H
Sbjct: 12 GSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHRFNRADMKAELDRRYAAGDATFSH-- 69
Query: 156 LGPYVEDLSKLA 167
+L +L
Sbjct: 70 FSYEANELKELE 81
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding,
hydrolase, nucleotide-binding; HET: GDP; 2.25A
{Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Length = 358
Score = 27.6 bits (62), Expect = 8.8
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 73 VYSDIGEEMLEHAFEGYNVCIFAYGQTGAGKS 104
++ G + LE A G + IFA GQ+G GKS
Sbjct: 200 SHTQDGLKPLEEALTG-RISIFA-GQSGVGKS 229
>3ees_A Probable pyrophosphohydrolase; nudix, RNA pyrophosphohydrolase;
1.90A {Bdellovibrio bacteriovorus} PDB: 3eeu_A 3ef5_A*
3ffu_A*
Length = 153
Score = 26.9 bits (60), Expect = 9.1
Identities = 10/37 (27%), Positives = 13/37 (35%), Gaps = 10/37 (27%)
Query: 343 NEDANAKLIRELKEEIQRLRDLLKQEGIEVQEASELI 379
E L REL EE+ GIE + +
Sbjct: 60 GETPEEALARELNEEL----------GIEAEVGELKL 86
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A
{Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Length = 287
Score = 27.7 bits (60), Expect = 9.2
Identities = 17/82 (20%), Positives = 31/82 (37%), Gaps = 7/82 (8%)
Query: 76 DIGEEMLEHAFEGYN-----VCIFAYGQTGAGKSYTMMGRQEVEGEEGIIPMICQDLFKR 130
+ + LE +G GQ G+GK+ + E +G + +I D FK+
Sbjct: 14 NRLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTS--LRSAIFEETQGNVIVIDNDTFKQ 71
Query: 131 IKDTTNDKLKSRWKNSNLRVRE 152
++ +K K+ V
Sbjct: 72 QHPNFDELVKLYEKDVVKHVTP 93
>2w58_A DNAI, primosome component (helicase loader); ATP-binding,
nucleotide-binding, hydrolase; HET: ADP; 2.50A
{Geobacillus kaustophilus HTA426}
Length = 202
Score = 27.3 bits (61), Expect = 9.6
Identities = 14/111 (12%), Positives = 39/111 (35%), Gaps = 12/111 (10%)
Query: 48 HKNFNFDYSYYSHDPSASNFATQAMVYSDIGEEMLEHAFEGYNVCIFAYGQTGAGKSYTM 107
+ +D A + E + ++ +G G GK+Y +
Sbjct: 19 ILRASLS-DVDLNDDGRIKAIRFAERFVAEYEPGKKMK------GLYLHGSFGVGKTYLL 71
Query: 108 --MGRQEVEGEEGIIPMICQDLFKRIKDTTNDKLKSRWKNSNLRVREHPLL 156
+ + + + + +LF+ +K + D+ + + +++ P+L
Sbjct: 72 AAIANELAKRNVSSLIVYVPELFRELKHSLQDQTMNEKLD---YIKKVPVL 119
>2r7a_A Bacterial heme binding protein; periplasmic binding protein, heme
transport, transport protein; HET: HEM; 2.05A {Shigella
dysenteriae} PDB: 2rg7_A
Length = 256
Score = 27.2 bits (61), Expect = 9.7
Identities = 15/88 (17%), Positives = 30/88 (34%), Gaps = 17/88 (19%)
Query: 359 QRLRDLLKQEGIEVQEASELIMSKMAETPNAGENVDWDFAQVELL------EKQGVDLKQ 412
Q + D L+ + + V P ++ +A + L +QG L
Sbjct: 72 QIVLDQLRAQKVNV-----------VTLPRVPATLEQMYANIRQLAKTLQVPEQGDALVT 120
Query: 413 EMQQRLRDLEEQYKREKNEADQAFEQQR 440
++ QRL +++ +K F
Sbjct: 121 QINQRLERVQQNVAAKKAPVKAMFILSA 148
>1gz0_A Hypothetical tRNA/RRNA methyltransferase YJFH;
2'O-methyltransferase, knot, montreal- kingston
bacterial structural genomics initiative, BSGI; 2.5A
{Escherichia coli} SCOP: c.116.1.1 d.79.3.3
Length = 253
Score = 27.2 bits (61), Expect = 9.9
Identities = 8/58 (13%), Positives = 23/58 (39%), Gaps = 7/58 (12%)
Query: 331 DRAKQIVCKAIVNEDANAKLIRELKEEIQRLRDLLKQEGIEVQEASELIMSKMAETPN 388
+RA + + + + K + L L+ +G+ +Q A+ + + ++
Sbjct: 26 ERAPERFQEVFILKGREDKRLLPL-------IHALESQGVVIQLANRQYLDEKSDGAV 76
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.129 0.356
Gapped
Lambda K H
0.267 0.0529 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,777,646
Number of extensions: 416167
Number of successful extensions: 1647
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1449
Number of HSP's successfully gapped: 160
Length of query: 459
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 362
Effective length of database: 3,993,456
Effective search space: 1445631072
Effective search space used: 1445631072
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 59 (27.0 bits)