RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7270
(459 letters)
>d2zfia1 c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), kif1a
[TaxId: 10090]}
Length = 349
Score = 323 bits (827), Expect = e-108
Identities = 256/353 (72%), Positives = 289/353 (81%), Gaps = 24/353 (6%)
Query: 2 SSVKVAVRVRPFNNREISRDCKSIIEMTGNTTVIINPKLPPESKDTHKNFNFDYSYYSHD 61
+SVKVAVRVRPFN+RE+SRD K II+M+G+TT I+NPK + K+T K+F+FDYSY+SH
Sbjct: 1 ASVKVAVRVRPFNSREMSRDSKCIIQMSGSTTTIVNPK---QPKETPKSFSFDYSYWSHT 57
Query: 62 -PSASNFATQAMVYSDIGEEMLEHAFEGYNVCIFAYGQTGAGKSYTMMGRQEVEGEEGII 120
P N+A+Q VY DIGEEML+HAFEGYNVCIFAYGQTGAGKSYTMMG+QE + ++GII
Sbjct: 58 SPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQE-KDQQGII 116
Query: 121 PMICQDLFKRIKDTTNDKLK-------------------SRWKNSNLRVREHPLLGPYVE 161
P +C+DLF RI DTTND + + NLRVREHPLLGPYVE
Sbjct: 117 PQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKGNLRVREHPLLGPYVE 176
Query: 162 DLSKLAVTCYRDIHDLIDEGNKARTVAATNMNETSSRSHAVFTIFFTQQAVDDMTDLTTE 221
DLSKLAVT Y DI DL+D GNK RTVAATNMNETSSRSHAVF I FTQ+ D T++TTE
Sbjct: 177 DLSKLAVTSYNDIQDLMDSGNKPRTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTE 236
Query: 222 KVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEISAVQHVAKKKK 281
KVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAE+ + + KKKK
Sbjct: 237 KVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKK 296
Query: 282 KADFIPYRDSVLTWLLRENLGGNSKTAMIAAISPADINYDETLSTLRYADRAK 334
K DFIPYRDSVLTWLLRENLGGNS+TAM+AA+SPADINYDETLSTLRYADRAK
Sbjct: 297 KTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAK 349
>d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]}
Length = 354
Score = 269 bits (687), Expect = 3e-87
Identities = 137/380 (36%), Positives = 200/380 (52%), Gaps = 49/380 (12%)
Query: 2 SSVKVAVRVRPFNNREISRDCKSIIEMTGNTTVIINPKLPPESKDTHKNFNFDYSYYSHD 61
+S+KV R RP N EI + I+ G T ++ SK+ +F FD +
Sbjct: 5 NSIKVVARFRPQNRVEIESGGQPIVTFQGPDTCTVD------SKEAQGSFTFDRVFDMS- 57
Query: 62 PSASNFATQAMVYSDIGEEMLEHAFEGYNVCIFAYGQTGAGKSYTMMGRQEVEGEE-GII 120
Q+ ++ + ++ GYN +FAYGQTGAGKSYTMMG + + G+I
Sbjct: 58 ------CKQSDIFDFSIKPTVDDILNGYNGTVFAYGQTGAGKSYTMMGTSIDDPDGRGVI 111
Query: 121 PMICQDLFKRIKDTTNDKLKS-----------------RWKNSNLRVREHPLLGPYVEDL 163
P I + +F I + + + +N NL V E G YV+ L
Sbjct: 112 PRIVEQIFTSILSSAANIEYTVRVSYMEIYMERIRDLLAPQNDNLPVHEEKNRGVYVKGL 171
Query: 164 SKLAVTCYRDIHDLIDEGNKARTVAATNMNETSSRSHAVFTIFFTQQAVDDMTDLTTEKV 223
++ V+ +++++++ G AR VAATNMN+ SSRSH++F I TQ+ V+ + K
Sbjct: 172 LEIYVSSVQEVYEVMRRGGNARAVAATNMNQESSRSHSIFVITITQKNVET----GSAKS 227
Query: 224 SKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEISAVQHVAKKKKKA 283
++ LVDLAGSE+ TGA G L+E INKSL+ LG VI+AL K+
Sbjct: 228 GQLFLVDLAGSEKVGKTGASGQTLEEAKKINKSLSALGMVINAL-----------TDGKS 276
Query: 284 DFIPYRDSVLTWLLRENLGGNSKTAMIAAISPADINYDETLSTLRYADRAKQIVCKAIVN 343
+PYRDS LT +L+E+LGGNS+T +I SP+ N ETLSTLR+ RAK I KA VN
Sbjct: 277 SHVPYRDSKLTRILQESLGGNSRTTLIINCSPSSYNDAETLSTLRFGMRAKSIKNKAKVN 336
Query: 344 EDANAKLIRELKEEIQRLRD 363
+ + ELK+ + + +
Sbjct: 337 AELSPA---ELKQMLAKAKT 353
>d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId: 9606]}
Length = 323
Score = 264 bits (675), Expect = 5e-86
Identities = 130/352 (36%), Positives = 178/352 (50%), Gaps = 50/352 (14%)
Query: 2 SSVKVAVRVRPFNNREISRDCKSIIEMTGNTTVIINPKLPPESKDTHKNFNFDYSYYSHD 61
++KV R RP N E++R K I + G TV+I K + FD + S
Sbjct: 5 CNIKVMCRFRPLNESEVNRGDKYIAKFQGEDTVVIASK----------PYAFDRVFQSS- 53
Query: 62 PSASNFATQAMVYSDIGEEMLEHAFEGYNVCIFAYGQTGAGKSYTMMGRQEVEGEEGIIP 121
+Q VY+D +++++ EGYN IFAYGQT +GK++TM G+ GIIP
Sbjct: 54 ------TSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPEGMGIIP 107
Query: 122 MICQDLFKRIKDTTNDKLKSRW-----------------KNSNLRVREHPLLGPYVEDLS 164
I QD+F I + +NL V E PYV+ +
Sbjct: 108 RIVQDIFNYIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHEDKNRVPYVKGCT 167
Query: 165 KLAVTCYRDIHDLIDEGNKARTVAATNMNETSSRSHAVFTIFFTQQAVDDMTDLTTEKVS 224
+ V ++ D IDEG R VA TNMNE SSRSH++F I Q+ +
Sbjct: 168 ERFVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQT----EQKLSG 223
Query: 225 KISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEISAVQHVAKKKKKAD 284
K+ LVDLAGSE+ TGA+G L E NINKSL+ LG VISALAE +
Sbjct: 224 KLYLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAE------------GST 271
Query: 285 FIPYRDSVLTWLLRENLGGNSKTAMIAAISPADINYDETLSTLRYADRAKQI 336
++PYRDS +T +L+++LGGN +T ++ SP+ N ET STL + RAK I
Sbjct: 272 YVPYRDSKMTRILQDSLGGNCRTTIVICCSPSSYNESETKSTLLFGQRAKTI 323
>d1x88a1 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), mitotic
kinesin eg5 [TaxId: 9606]}
Length = 345
Score = 258 bits (660), Expect = 2e-83
Identities = 118/365 (32%), Positives = 176/365 (48%), Gaps = 50/365 (13%)
Query: 4 VKVAVRVRPFNNREISRDCKSIIEMTGNTTVIINPKLPPESKDTHKNFNFDYSYYSHDPS 63
++V VR RPFN E SI+E + K + K + FD + +
Sbjct: 2 IQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGAS--- 58
Query: 64 ASNFATQAMVYSDIGEEMLEHAFEGYNVCIFAYGQTGAGKSYTMM--------GRQEVEG 115
Q VY + +L+ GYN IFAYGQTG GK++TM E +
Sbjct: 59 ----TKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDP 114
Query: 116 EEGIIPMICQDLFKR---------------------IKDTTNDKLKSRWKNSNLRVREHP 154
GIIP +F++ + D N + +
Sbjct: 115 LAGIIPRTLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLLNPS-SDVSERLQMFDDPRN 173
Query: 155 LLGPYVEDLSKLAVTCYRDIHDLIDEGNKARTVAATNMNETSSRSHAVFTIFFTQQAVDD 214
G ++ L ++ V +++ ++++G RT AAT MN SSRSH+VF++ +
Sbjct: 174 KRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTI 233
Query: 215 MTDLTTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEISAVQ 274
+ K+ K++LVDLAGSE +GA R +E NIN+SL TLG+VI+AL E
Sbjct: 234 DGEELV-KIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVE----- 287
Query: 275 HVAKKKKKADFIPYRDSVLTWLLRENLGGNSKTAMIAAISPADINYDETLSTLRYADRAK 334
+ +PYR+S LT +L+++LGG ++T++IA ISPA +N +ETLSTL YA RAK
Sbjct: 288 -------RTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAK 340
Query: 335 QIVCK 339
I+ K
Sbjct: 341 NILNK 345
>d1ry6a_ c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodium
falciparum) [TaxId: 5833]}
Length = 330
Score = 250 bits (638), Expect = 2e-80
Identities = 102/354 (28%), Positives = 151/354 (42%), Gaps = 49/354 (13%)
Query: 4 VKVAVRVRPFNNREISRDCKSIIEMTGNTTVIINP---KLPPESKDTHKNFNFDYSYYSH 60
+KV VR RP + E + II + N T+ I+ K+ F D +
Sbjct: 2 IKVVVRKRPLSELEKKKKDSDIITVKNNCTLYIDEPRYKVDMTKYIERHEFIVDKVFDDT 61
Query: 61 DPSASNFATQAMVYSDIGEEMLEHAFE-GYNVCIFAYGQTGAGKSYTMMGRQEVEGEE-- 117
VY + + ++ +E G FAYGQTG+GK+YTM+G Q +
Sbjct: 62 -------VDNFTVYENTIKPLIIDLYENGCVCSCFAYGQTGSGKTYTMLGSQPYGQSDTP 114
Query: 118 GIIPMICQDLFKRIKDTTNDKLKS----------------RWKNSNLRVREHPLLGPYVE 161
GI D+F + D K K + E+ V+
Sbjct: 115 GIFQYAAGDIFTFLNIYDKDNTKGIFISFYEIYCGKLYDLLQKRKMVAALENGKKEVVVK 174
Query: 162 DLSKLAVTCYRDIHDLIDEGNKARTVAATNMNETSSRSHAVFTIFFTQQAVDDMTDLTTE 221
DL L V ++ + +G R + + N+ SSRSHA+ I +
Sbjct: 175 DLKILRVLTKEELILKMIDGVLLRKIGVNSQNDESSRSHAILNIDLKDINKNTS------ 228
Query: 222 KVSKISLVDLAGSERADSTGAKG-TRLKEGANINKSLTTLGKVISALAEISAVQHVAKKK 280
+ KI+ +DLAGSER T ++ +GANIN+SL L + I A+
Sbjct: 229 -LGKIAFIDLAGSERGADTVSQNKQTQTDGANINRSLLALKECIRAMDS----------- 276
Query: 281 KKADFIPYRDSVLTWLLRENLGGNSKTAMIAAISPADINYDETLSTLRYADRAK 334
+ IP+RDS LT +LR+ G SK+ MIA ISP ++TL+TLRY+ R K
Sbjct: 277 -DKNHIPFRDSELTKVLRDIFVGKSKSIMIANISPTISCCEQTLNTLRYSSRVK 329
>d1v8ka_ c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c [TaxId:
10090]}
Length = 362
Score = 245 bits (625), Expect = 6e-78
Identities = 110/360 (30%), Positives = 164/360 (45%), Gaps = 53/360 (14%)
Query: 2 SSVKVAVRVRPFNNREISRDCKSIIEMTGNTTVIINP---KLPPESKDTHKNFNFDYSYY 58
+ V VR RP N +E+++ +I + ++++ K+ ++ F FD+++
Sbjct: 30 HRICVCVRKRPLNKQELAKKEIDVISVPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFD 89
Query: 59 SHDPSASNFATQAMVYSDIGEEMLEHAFEGYNVCIFAYGQTGAGKSYTMM---GRQEVEG 115
A+ +VY +++ FEG FAYGQTG+GK++TM +
Sbjct: 90 ET-------ASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQNA 142
Query: 116 EEGIIPMICQDLFKRIKDTTNDKLKS-----------------RWKNSNLRVREHPLLGP 158
+GI M +D+F L K + LRV E
Sbjct: 143 SKGIYAMASRDVFLLKNQPRYRNLNLEVYVTFFEIYNGKVFDLLNKKAKLRVLEDSRQQV 202
Query: 159 YVEDLSKLAVTCYRDIHDLIDEGNKARTVAATNMNETSSRSHAVFTIFFTQQAVDDMTDL 218
V L + VTC D+ +I+ G+ RT T N SSRSHA F I +
Sbjct: 203 QVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLRTKGRLHG--- 259
Query: 219 TTEKVSKISLVDLAGSERADSTGAKGTRLK-EGANINKSLTTLGKVISALAEISAVQHVA 277
K SLVDLAG+ER T + + + EGA INKSL L + I AL +
Sbjct: 260 ------KFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQ-------- 305
Query: 278 KKKKKADFIPYRDSVLTWLLREN-LGGNSKTAMIAAISPADINYDETLSTLRYADRAKQI 336
P+R+S LT +LR++ +G NS+T MIA ISP + + TL+TLRYADR K++
Sbjct: 306 ----NKAHTPFRESKLTQVLRDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRVKEL 361
>d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato
(Solanum tuberosum) [TaxId: 4113]}
Length = 364
Score = 243 bits (621), Expect = 2e-77
Identities = 123/395 (31%), Positives = 194/395 (49%), Gaps = 55/395 (13%)
Query: 4 VKVAVRVRPFNNREISRDCKSIIEMTGNTTVIINPKLPPESKDTHKNFNFDYSYYSHDPS 63
++V R+RP +EI ++ I TV K D K +D + +
Sbjct: 2 IRVYCRLRPLCEKEIIAKERNAIRSVDEFTVEHLWK-----DDKAKQHMYDRVFDGN--- 53
Query: 64 ASNFATQAMVYSDIGEEMLEHAFEGYNVCIFAYGQTGAGKSYTMMGRQEVEGEEGIIPMI 123
ATQ V+ D + +++ A +GYNVCIFAYGQTG+GK++T+ G G+ P
Sbjct: 54 ----ATQDDVFEDT-KYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGADS---NPGLTPRA 105
Query: 124 CQDLFKRI-------------------KDTTNDKLKSRW-KNSNLRVREHPLLGPYVEDL 163
+LF+ + +DT D L + K L +++ VE++
Sbjct: 106 MSELFRIMKKDSNKFSFSLKAYMVELYQDTLVDLLLPKQAKRLKLDIKKDSKGMVSVENV 165
Query: 164 SKLAVTCYRDIHDLIDEGNKARTVAATNMNETSSRSHAVFTIFFTQQAVDDMTDLTTEKV 223
+ ++++ Y ++ +I G++ R T MNE SSRSH + ++ +
Sbjct: 166 TVVSISTYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIESTNLQTQA----IAR 221
Query: 224 SKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEISAVQHVAKKKKKA 283
K+S VDLAGSER +G+ G +LKE +INKSL+ LG VISAL+
Sbjct: 222 GKLSFVDLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVISALSS------------GN 269
Query: 284 DFIPYRDSVLTWLLRENLGGNSKTAMIAAISPADINYDETLSTLRYADRAKQIVCKAIVN 343
IPYR+ LT L+ ++LGGN+KT M ISPA+ N DET ++L YA R + IV N
Sbjct: 270 QHIPYRNHKLTMLMSDSLGGNAKTLMFVNISPAESNLDETHNSLTYASRVRSIVNDPSKN 329
Query: 344 EDANAKLIRELKEEIQRLRDLLKQEGIEVQEASEL 378
+K + LK+ + ++ ++G + +E E+
Sbjct: 330 VS--SKEVARLKKLVSYWKEQAGRKGDD-EELEEI 361
>d1f9va_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional)
{Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId:
4932]}
Length = 342
Score = 227 bits (580), Expect = 1e-71
Identities = 100/364 (27%), Positives = 164/364 (45%), Gaps = 56/364 (15%)
Query: 3 SVKVAVRVRPFNNREISRD--CKSIIEMTGNTTVIINPKLPPESKDTHKNFNFDYSYYSH 60
+++V R+RP + D ++ E N+ V ++ F FD +
Sbjct: 2 NIRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQQ 61
Query: 61 DPSASNFATQAMVYSDIGEEMLEHAFEGYNVCIFAYGQTGAGKSYTMMGRQEVEGEEGII 120
T V+ ++G+ +++ + +GYNVCIFAYGQTG+GK++TM+ +GII
Sbjct: 62 -------DTNVDVFKEVGQ-LVQSSLDGYNVCIFAYGQTGSGKTFTML-----NPGDGII 108
Query: 121 PMICQDLFKR------------------------IKDTTNDKLKSRWKNS----NLRVRE 152
P +F I D ++ S + +
Sbjct: 109 PSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHD 168
Query: 153 HPLLGPYVEDLSKLAVTCYRDIHDLIDEGNKARTVAATNMNETSSRSHAVFTIFFTQQAV 212
+ +++ + + ++ + NK R+ A+T NE SS SH++F I +
Sbjct: 169 QETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSASHSIFIIHLSGSNA 228
Query: 213 DDMTDLTTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEISA 272
++LVDLAGSER + + G RL+E NINKSL+ LG VI AL +
Sbjct: 229 KTGA----HSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQ--- 281
Query: 273 VQHVAKKKKKADFIPYRDSVLTWLLRENLGGNSKTAMIAAISPADINYDETLSTLRYADR 332
IP+R+S LT+LL+ +L G+SKT M ISP+ + +ETL++LR+A +
Sbjct: 282 ------PDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASK 335
Query: 333 AKQI 336
Sbjct: 336 VNST 339
>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional)
{Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 368
Score = 224 bits (572), Expect = 5e-70
Identities = 106/352 (30%), Positives = 165/352 (46%), Gaps = 51/352 (14%)
Query: 4 VKVAVRVRPFNNREISRDCKSIIEMTGNTTVIINPKLPPESKDTHKNFNFDYSYYSHDPS 63
++V R+RP E +R C + +T + + +SK + F+FD ++
Sbjct: 47 IRVFCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPL--- 103
Query: 64 ASNFATQAMVYSDIGEEMLEHAFEGYNVCIFAYGQTGAGKSYTMMGRQEVEGEEGIIPMI 123
++Q+ ++ + +++ A +GYN+CIFAYGQTG+GK+YTM G E G+IP
Sbjct: 104 ----SSQSDIFEMVSP-LIQSALDGYNICIFAYGQTGSGKTYTMDGVPE---SVGVIPRT 155
Query: 124 CQDLFKRIK--------------------DTTNDKLKSRWKNSNLRVREHPLLGPYVEDL 163
LF I+ + D L + K+ +R+ ++ YV ++
Sbjct: 156 VDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKNDIYVSNI 215
Query: 164 SKLAVTCYRDIHDLIDEGNKARTVAATNMNETSSRSHAVFTIFFTQQAVDDMTDLTTEKV 223
++ V + L+ R A+T NE SSRSHAV + + + V
Sbjct: 216 TEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEK----QEISV 271
Query: 224 SKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEISAVQHVAKKKKKA 283
I+LVDLAG + TR+ E NIN+SL+ L VI AL + K
Sbjct: 272 GSINLVDLAG----SESPKTSTRMTETKNINRSLSELTNVILALLQ------------KQ 315
Query: 284 DFIPYRDSVLTWLLRENLGGNSKTAMIAAISPADINYDETLSTLRYADRAKQ 335
D IPYR+S LT LL +LGGNSKT M +SP + E++ +LR+A
Sbjct: 316 DHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNS 367
>d2es4d1 a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB)
{Burkholderia glumae [TaxId: 337]}
Length = 280
Score = 34.2 bits (78), Expect = 0.024
Identities = 14/104 (13%), Positives = 35/104 (33%), Gaps = 2/104 (1%)
Query: 348 AKLIRELKEEIQRLRDLLKQEGIEVQEASELIMSKMAETPNAGENVDWDFAQVELLEKQG 407
A L +L + + + L + V + ++L + + + Q
Sbjct: 161 AALDAQLTPDERAQQAALHAQQDAVTKIADLQKAGATPDQMRAQIAQTLGPEAAARAAQM 220
Query: 408 VDLKQEMQQRLRDLEEQYKREKNEADQAFEQQRKSSLRRISKQM 451
+ Q R + + R++ A Q R + + ++ +Q
Sbjct: 221 QQDDEAWQTRYQAYAAE--RDRIAAQGLAPQDRDARIAQLRQQT 262
>d2ia1a1 d.359.1.1 (A:1-166) Uncharacterized protein BH3703
{Bacillus halodurans [TaxId: 86665]}
Length = 166
Score = 32.0 bits (73), Expect = 0.074
Identities = 16/104 (15%), Positives = 31/104 (29%), Gaps = 20/104 (19%)
Query: 342 VNEDANAKLIRELKEEIQRLRDLLKQEGIEVQEASELIMSKMAETPNAGE-NVD-----W 395
V +D + EL I R + E + ++ +G+ N+D
Sbjct: 65 VPQDEFMEKYNELSFCISDFRKDYAEAFGEPWMSFQMTFY------ASGKFNIDFYYDKN 118
Query: 396 DFAQVELL-----EKQGVDLKQEMQQRLRDLEEQYKREKNEADQ 434
F E G + ++ +Y EK + +
Sbjct: 119 PFDTFLTRLAWQYEHFGTIPEDS---FYKETLNEYLEEKAQGKR 159
>d1rxxa_ d.126.1.4 (A:) Arginine deiminase {Pseudomonas aeruginosa
[TaxId: 287]}
Length = 412
Score = 32.0 bits (72), Expect = 0.14
Identities = 16/74 (21%), Positives = 31/74 (41%), Gaps = 4/74 (5%)
Query: 351 IRELKEEIQRLRDLLKQEGIEVQEASELIMSKMAETPNAGENVDWDFAQVELLEKQGVDL 410
+ + K + +++ GI+V E L + ET E + W + + G+ L
Sbjct: 43 VNQAKRDHFDFVTKMRERGIDVLEMHNL----LTETIQNPEALKWILDRKITADSVGLGL 98
Query: 411 KQEMQQRLRDLEEQ 424
E++ L LE +
Sbjct: 99 TSELRSWLESLEPR 112
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId:
9606]}
Length = 529
Score = 30.2 bits (66), Expect = 0.60
Identities = 16/99 (16%), Positives = 31/99 (31%), Gaps = 5/99 (5%)
Query: 293 LTWLLRENLGGNSKTAMIAAISPADINYDETLSTLRYADRAKQIVCKAIVNEDANAKLIR 352
L LL + + + + A I+ + + N +IR
Sbjct: 402 LVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILAR----DVHNRIVIR 457
Query: 353 ELKEEIQRLRDLLKQEGIEVQEASELIMSKMAETPNAGE 391
L I LL +Q + ++ ++A+ A E
Sbjct: 458 GLNT-IPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAE 495
>d3deda1 d.145.1.4 (A:341-427) Probable hemolysin CV0231
{Chromobacterium violaceum [TaxId: 536]}
Length = 87
Score = 27.8 bits (62), Expect = 0.65
Identities = 6/57 (10%), Positives = 24/57 (42%)
Query: 351 IRELKEEIQRLRDLLKQEGIEVQEASELIMSKMAETPNAGENVDWDFAQVELLEKQG 407
+ +E + L + G + + +++ ++ P+ + +W+ E+++
Sbjct: 19 LDRFREFFELEAPLPGEAGGNIHTLAGVMLYQLGRVPSVTDRFEWNGFSFEVVDMDR 75
>d2oaia1 d.145.1.4 (A:5-91) Hemolysin TlyC {Xylella fastidiosa
[TaxId: 2371]}
Length = 87
Score = 26.9 bits (60), Expect = 1.3
Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Query: 351 IRELKEEIQRLRDLLKQEGIEVQEASELIMSKMAETPNAGENVDWDFAQVELLEKQG 407
I EL+E + +L E + + +S P+ GE DW ++E+++ G
Sbjct: 21 IEELREVLGA--ELPDGEENNYHTLAGMCISYFGRIPHVGEYFDWAGWRIEIVDLDG 75
>d2f23a1 a.2.1.1 (A:3-77) GreA transcript cleavage protein,
N-terminal domain {Thermus thermophilus [TaxId: 274]}
Length = 75
Score = 26.6 bits (59), Expect = 1.7
Identities = 15/73 (20%), Positives = 37/73 (50%), Gaps = 10/73 (13%)
Query: 355 KEEIQRLRDLLKQEGIEVQEASELIMSKMAETPNAGENVDWDFAQVELLEKQGVDLKQEM 414
K +RL L++E +QEA++ I+ ++ E+ + ++ + A+ +++ +
Sbjct: 7 KAGYERLMQQLERERERLQEATK-ILQELMESSDDYDDSGLEAAK----QEKA-----RI 56
Query: 415 QQRLRDLEEQYKR 427
+ R+ LE+ R
Sbjct: 57 EARIDSLEDILSR 69
>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding
protein 1 (GBP1), C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 300
Score = 28.2 bits (62), Expect = 2.0
Identities = 14/122 (11%), Positives = 45/122 (36%)
Query: 331 DRAKQIVCKAIVNEDANAKLIRELKEEIQRLRDLLKQEGIEVQEASELIMSKMAETPNAG 390
K+ + ++++ + + + D + Q + E + I + + +A
Sbjct: 158 QDLKKKYYEEPRKGIQAEEILQTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQ 217
Query: 391 ENVDWDFAQVELLEKQGVDLKQEMQQRLRDLEEQYKREKNEADQAFEQQRKSSLRRISKQ 450
+ E+ ++ Q+ L+ L E+ + ++ + + E+ L+ +
Sbjct: 218 ASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQL 277
Query: 451 MK 452
+K
Sbjct: 278 LK 279
>d2o1ra1 d.145.1.4 (A:1-78) Hypothetical protein HI0107 {Haemophilus
influenzae [TaxId: 727]}
Length = 78
Score = 26.1 bits (58), Expect = 2.6
Identities = 13/53 (24%), Positives = 22/53 (41%), Gaps = 5/53 (9%)
Query: 360 RLRDLLKQEGI-----EVQEASELIMSKMAETPNAGENVDWDFAQVELLEKQG 407
LRDL K + + + LI+ + E P+ G + D + +LE
Sbjct: 15 NLRDLNKMFNWELDTEDARTFNGLILEHLEEIPDEGTICEIDGLLITILEVGD 67
>d2plsa1 d.145.1.4 (A:345-428) Hypothetical protein CT0541
{Chlorobium tepidum [TaxId: 1097]}
Length = 84
Score = 25.8 bits (57), Expect = 3.6
Identities = 13/57 (22%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 351 IRELKEEIQRLRDLLKQEGIEVQEASELIMSKMAETPNAGENVDWDFAQVELLEKQG 407
+ ELK+ + LR + ++E S +IM + P G+ W+ ++E+++
Sbjct: 17 VPELKDTLG-LRAVPEEEKGVYHTLSGMIMWLLGRLPQTGDITFWENWRLEVIDMDS 72
>d1ujpa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Thermus
thermophilus [TaxId: 274]}
Length = 271
Score = 27.4 bits (60), Expect = 3.8
Identities = 11/50 (22%), Positives = 24/50 (48%), Gaps = 6/50 (12%)
Query: 317 DINYDETLSTLRYADRAKQIV----CKAIVNEDANAKLIRELKEEIQRLR 362
++ T + AD +V +A+ + A L++E+++ +QRL
Sbjct: 210 GVSGKATAAQAAVADGV--VVGSALVRALEEGRSLAPLLQEIRQGLQRLE 257
>d2nqwa1 d.145.1.4 (A:4-90) Hypothetical protein PG0272
{Porphyromonas gingivalis [TaxId: 837]}
Length = 87
Score = 25.5 bits (56), Expect = 4.1
Identities = 8/57 (14%), Positives = 24/57 (42%)
Query: 351 IRELKEEIQRLRDLLKQEGIEVQEASELIMSKMAETPNAGENVDWDFAQVELLEKQG 407
+ +++ + + + G EV S L + E P+ G+ ++ + ++ +
Sbjct: 19 LSDVRHYLDLPENAFGELGDEVDTLSGLFLEIKQELPHVGDTAVYEPFRFQVTQMDK 75
>d1s9ra_ d.126.1.4 (A:) Arginine deiminase {Mycoplasma arginini
[TaxId: 2094]}
Length = 409
Score = 27.0 bits (59), Expect = 5.1
Identities = 20/94 (21%), Positives = 35/94 (37%), Gaps = 4/94 (4%)
Query: 351 IRELKEEIQRLRDLLKQEGIEVQEASELIMSKMAETPNAGENVDWDFAQVELLEKQGVDL 410
+ ++E ++ LK I V E +L +AET + D E LE L
Sbjct: 50 SHDARKEHKQFVAELKANDINVVELIDL----VAETYDLASQEAKDKLIEEFLEDSEPVL 105
Query: 411 KQEMQQRLRDLEEQYKREKNEADQAFEQQRKSSL 444
+E + +R+ + K + + K L
Sbjct: 106 SEEHKVVVRNFLKAKKTSRELVEIMMAGITKYDL 139
>d1w53a_ a.186.1.2 (A:) Phosphoserine phosphatase RsbU, N-terminal
domain {Bacillus subtilis [TaxId: 1423]}
Length = 84
Score = 25.1 bits (55), Expect = 6.1
Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 408 VDLKQEMQQRLRDLEEQYKREKNEADQAFEQQRKSSLRRISKQM 451
+D ++ ++QR L +Y E E + Q +K S + I Q+
Sbjct: 1 MDFREVIEQRYHQLLSRYIAELTE--TSLYQAQKFSRKTIEHQI 42
>d1v6ta_ c.6.2.5 (A:) Hypothetical protein PH0986 {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 254
Score = 26.4 bits (58), Expect = 6.4
Identities = 6/22 (27%), Positives = 13/22 (59%)
Query: 358 IQRLRDLLKQEGIEVQEASELI 379
+R +L++EG+++ E I
Sbjct: 233 TSYIRKVLEEEGVKIVPMKEFI 254
>d1smyd_ e.29.1.2 (D:) RNA-polymerase beta-prime {Thermus
thermophilus [TaxId: 274]}
Length = 1504
Score = 27.1 bits (59), Expect = 6.6
Identities = 28/213 (13%), Positives = 61/213 (28%), Gaps = 12/213 (5%)
Query: 247 LKEGANINKSLTTLGKVISALAEISAVQHVAKKKKKADFIPYRDSVLTWLLRENLGGNSK 306
L G + + LAE + + ++ + A + +L K
Sbjct: 283 LPVGMTPLVVHGEIVEKGQPLAEAKGLLRMPRQVRAAQVEAEEEGETVYLTLFLEWTEPK 342
Query: 307 TAMIAAISPADINYDETLSTLRYADRAKQIVCKAIVNEDANAKLIRELKEEIQRLRDLLK 366
+ + + A + I + L + + R
Sbjct: 343 DYRVQPHMNVVVPEGARVEAGDKIVAAIDPEEEVIAEAEGVVHLHEPASILVVKARVYPF 402
Query: 367 QEGIEVQEASELIMSKMAETPNAGEN-----VDWDFAQVELLEKQGVDLKQEM-----QQ 416
++ +EV + + ++ V+ D + + + D+ M QQ
Sbjct: 403 EDDVEVSTGDRVAPGDVLADGGKVKSDVYGRVEVDLVRNVVRVVESYDIDARMGAEAIQQ 462
Query: 417 RLR--DLEEQYKREKNEADQAFEQQRKSSLRRI 447
L+ DLE K E +R + +R+
Sbjct: 463 LLKELDLEALEKELLEEMKHPSRARRAKARKRL 495
>d2d1pa1 c.114.1.1 (A:1-128) tRNA 2-thiouridine synthesizing protein
D, TusD {Escherichia coli [TaxId: 562]}
Length = 128
Score = 25.7 bits (56), Expect = 7.4
Identities = 8/34 (23%), Positives = 16/34 (47%)
Query: 198 RSHAVFTIFFTQQAVDDMTDLTTEKVSKISLVDL 231
H + ++FF ++ V + LT+ + LV
Sbjct: 30 DGHELSSVFFYREGVYNANQLTSPASDEFDLVRA 63
>d1vqok1 b.39.1.1 (K:1-132) Ribosomal protein L14 {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 132
Score = 25.5 bits (56), Expect = 7.6
Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Query: 1 MSSVKVAVRVRPFNNREISRDCKSIIEMTGNTTVIINPKLPP 42
V AV VR + I R + ++ N VI++ P
Sbjct: 65 RRQVLEAVVVR--QRKPIRRPDGTRVKFEDNAAVIVDENEDP 104
>d2hy5a1 c.114.1.1 (A:1-130) Sulfurtransferase DsrE {Chromatium
vinosum [TaxId: 1049]}
Length = 130
Score = 25.7 bits (56), Expect = 8.0
Identities = 10/35 (28%), Positives = 17/35 (48%)
Query: 197 SRSHAVFTIFFTQQAVDDMTDLTTEKVSKISLVDL 231
+ H +F +FF V++ T LTT +V+
Sbjct: 29 EKGHEIFRVFFYHDGVNNSTRLTTPPQDDRHIVNR 63
>d3bula2 c.23.6.1 (A:741-896) Methionine synthase, C-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 156
Score = 25.8 bits (56), Expect = 9.1
Identities = 4/27 (14%), Positives = 13/27 (48%)
Query: 337 VCKAIVNEDANAKLIRELKEEIQRLRD 363
V A++++ + ++E + +R
Sbjct: 126 VVAALLSDTQRDDFVARTRKEYETVRI 152
>d2ez9a3 c.36.1.9 (A:366-593) Pyruvate oxidase {Lactobacillus
plantarum [TaxId: 1590]}
Length = 228
Score = 26.0 bits (56), Expect = 9.9
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 343 NEDANAKLIRELKEEIQRLRDLLKQEGIE 371
D A R +++Q L LKQ G++
Sbjct: 199 AADIEAFKQRYEAQDLQPLSTYLKQFGLD 227
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.129 0.356
Gapped
Lambda K H
0.267 0.0679 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,598,295
Number of extensions: 73806
Number of successful extensions: 390
Number of sequences better than 10.0: 1
Number of HSP's gapped: 347
Number of HSP's successfully gapped: 63
Length of query: 459
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 371
Effective length of database: 1,199,356
Effective search space: 444961076
Effective search space used: 444961076
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 54 (24.7 bits)