Query psy7271
Match_columns 305
No_of_seqs 130 out of 226
Neff 5.3
Searched_HMMs 46136
Date Fri Aug 16 22:26:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7271.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7271hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0241|consensus 100.0 2.8E-50 6.1E-55 414.4 7.8 229 1-287 737-993 (1714)
2 KOG0245|consensus 100.0 9.2E-35 2E-39 303.3 -0.3 250 1-297 748-1011(1221)
3 PF12423 KIF1B: Kinesin protei 99.1 6E-11 1.3E-15 83.4 1.7 39 1-42 7-45 (45)
4 PF00168 C2: C2 domain; Inter 96.8 0.015 3.3E-07 42.8 9.0 70 162-243 2-75 (85)
5 cd04041 C2A_fungal C2 domain f 96.2 0.03 6.5E-07 45.1 8.2 74 160-242 2-80 (111)
6 cd08680 C2_Kibra C2 domain fou 96.1 0.03 6.4E-07 46.9 7.9 71 161-241 16-93 (124)
7 PF11618 DUF3250: Protein of u 96.0 0.0043 9.3E-08 51.3 2.4 55 178-240 1-55 (107)
8 cd08385 C2A_Synaptotagmin-1-5- 96.0 0.034 7.4E-07 45.3 7.7 73 160-242 17-93 (124)
9 cd08682 C2_Rab11-FIP_classI C2 95.9 0.045 9.7E-07 45.0 8.2 72 161-242 1-76 (126)
10 cd04030 C2C_KIAA1228 C2 domain 95.9 0.039 8.5E-07 44.9 7.8 73 160-242 17-95 (127)
11 cd08388 C2A_Synaptotagmin-4-11 95.9 0.036 7.8E-07 46.2 7.4 74 159-241 16-94 (128)
12 cd08690 C2_Freud-1 C2 domain f 95.7 0.048 1E-06 47.8 7.8 75 163-241 6-88 (155)
13 cd00276 C2B_Synaptotagmin C2 d 95.7 0.046 9.9E-07 44.7 7.4 73 160-242 15-93 (134)
14 cd04011 C2B_Ferlin C2 domain s 95.6 0.041 8.9E-07 44.2 6.6 75 157-242 2-76 (111)
15 cd08387 C2A_Synaptotagmin-8 C2 95.6 0.057 1.2E-06 44.0 7.4 73 160-242 17-93 (124)
16 cd04036 C2_cPLA2 C2 domain pre 95.6 0.077 1.7E-06 43.0 8.0 70 161-242 2-75 (119)
17 cd08390 C2A_Synaptotagmin-15-1 95.5 0.067 1.5E-06 43.3 7.3 73 160-242 15-92 (123)
18 cd08393 C2A_SLP-1_2 C2 domain 95.4 0.061 1.3E-06 44.5 6.9 73 160-242 16-95 (125)
19 cd04017 C2D_Ferlin C2 domain f 95.3 0.21 4.5E-06 41.7 9.9 76 159-242 1-82 (135)
20 cd04043 C2_Munc13_fungal C2 do 95.1 0.14 2.9E-06 41.8 8.2 71 160-242 2-76 (126)
21 cd08681 C2_fungal_Inn1p-like C 95.0 0.15 3.3E-06 41.0 8.2 70 160-243 2-75 (118)
22 cd08402 C2B_Synaptotagmin-1 C2 94.9 0.11 2.5E-06 43.1 7.4 73 160-242 16-94 (136)
23 cd04009 C2B_Munc13-like C2 dom 94.8 0.15 3.3E-06 42.4 7.7 75 160-242 17-99 (133)
24 cd08406 C2B_Synaptotagmin-12 C 94.8 0.12 2.6E-06 43.8 7.2 99 160-268 16-124 (136)
25 cd08375 C2_Intersectin C2 doma 94.7 0.17 3.8E-06 42.7 8.1 68 160-242 16-87 (136)
26 cd08409 C2B_Synaptotagmin-15 C 94.7 0.11 2.4E-06 43.7 6.8 100 160-269 16-126 (137)
27 cd04029 C2A_SLP-4_5 C2 domain 94.7 0.15 3.2E-06 42.3 7.3 71 161-241 17-94 (125)
28 cd04037 C2E_Ferlin C2 domain f 94.6 0.21 4.5E-06 41.2 7.9 69 161-242 2-74 (124)
29 cd08376 C2B_MCTP_PRT C2 domain 94.5 0.3 6.6E-06 39.1 8.7 67 161-242 2-72 (116)
30 cd08408 C2B_Synaptotagmin-14_1 94.5 0.16 3.4E-06 43.1 7.2 73 160-242 16-95 (138)
31 cd08407 C2B_Synaptotagmin-13 C 94.4 0.17 3.6E-06 43.3 7.2 98 161-268 17-126 (138)
32 cd08384 C2B_Rabphilin_Doc2 C2 94.4 0.16 3.5E-06 41.9 6.9 73 160-242 14-92 (133)
33 cd08391 C2A_C2C_Synaptotagmin_ 94.4 0.25 5.4E-06 39.6 7.9 67 161-242 3-79 (121)
34 cd08392 C2A_SLP-3 C2 domain fi 94.4 0.19 4.2E-06 42.0 7.4 73 160-242 16-95 (128)
35 cd08688 C2_KIAA0528-like C2 do 94.3 0.18 3.9E-06 40.5 6.9 68 162-242 2-75 (110)
36 cd04032 C2_Perforin C2 domain 94.2 0.27 5.9E-06 41.4 7.9 70 160-243 29-101 (127)
37 cd04039 C2_PSD C2 domain prese 94.2 0.3 6.4E-06 39.7 7.9 68 161-242 3-78 (108)
38 cd04031 C2A_RIM1alpha C2 domai 94.1 0.22 4.8E-06 40.3 7.0 73 160-242 17-96 (125)
39 cd04035 C2A_Rabphilin_Doc2 C2 94.0 0.21 4.5E-06 40.7 6.7 75 159-242 15-95 (123)
40 cd08403 C2B_Synaptotagmin-3-5- 93.9 0.23 4.9E-06 41.2 7.0 73 160-242 15-93 (134)
41 cd08386 C2A_Synaptotagmin-7 C2 93.9 0.26 5.7E-06 40.0 7.2 74 160-242 17-94 (125)
42 cd08685 C2_RGS-like C2 domain 93.9 0.29 6.2E-06 40.4 7.4 72 160-242 13-89 (119)
43 cd08382 C2_Smurf-like C2 domai 93.9 0.36 7.7E-06 39.6 7.9 66 161-242 2-71 (123)
44 cd08404 C2B_Synaptotagmin-4 C2 93.8 0.25 5.5E-06 41.1 7.2 73 160-242 16-94 (136)
45 cd04040 C2D_Tricalbin-like C2 93.7 0.33 7.1E-06 38.7 7.3 68 161-242 1-72 (115)
46 cd08410 C2B_Synaptotagmin-17 C 93.7 0.32 7E-06 40.7 7.5 73 160-242 15-93 (135)
47 cd04050 C2B_Synaptotagmin-like 93.6 0.46 9.9E-06 37.7 8.0 66 162-242 3-72 (105)
48 cd08381 C2B_PI3K_class_II C2 d 93.6 0.29 6.3E-06 40.4 7.0 72 161-242 15-92 (122)
49 cd08378 C2B_MCTP_PRT_plant C2 93.6 0.41 8.9E-06 39.4 7.8 67 161-242 2-68 (121)
50 cd08521 C2A_SLP C2 domain firs 93.4 0.38 8.3E-06 38.8 7.2 73 160-242 15-94 (123)
51 cd04020 C2B_SLP_1-2-3-4 C2 dom 93.3 0.29 6.3E-06 42.6 6.8 73 161-242 29-107 (162)
52 cd08405 C2B_Synaptotagmin-7 C2 93.2 0.33 7.1E-06 40.3 6.8 73 160-242 16-94 (136)
53 cd04044 C2A_Tricalbin-like C2 92.9 0.87 1.9E-05 36.5 8.7 69 160-242 3-76 (124)
54 cd08395 C2C_Munc13 C2 domain t 92.9 0.5 1.1E-05 39.5 7.4 72 161-241 2-80 (120)
55 cd04024 C2A_Synaptotagmin-like 92.8 0.58 1.3E-05 37.9 7.5 67 161-242 3-75 (128)
56 cd08389 C2A_Synaptotagmin-14_1 92.4 0.53 1.2E-05 38.8 6.9 72 160-242 17-93 (124)
57 cd04022 C2A_MCTP_PRT_plant C2 92.3 0.48 1E-05 38.8 6.5 70 161-242 2-75 (127)
58 cd04025 C2B_RasA1_RasA4 C2 dom 92.2 0.84 1.8E-05 37.0 7.8 67 161-242 2-72 (123)
59 cd04051 C2_SRC2_like C2 domain 91.9 0.72 1.6E-05 37.5 7.1 74 160-242 1-78 (125)
60 cd04018 C2C_Ferlin C2 domain t 91.6 0.99 2.1E-05 39.2 7.9 70 160-243 1-88 (151)
61 smart00239 C2 Protein kinase C 91.5 1.2 2.6E-05 32.9 7.4 70 161-242 2-75 (101)
62 cd04010 C2B_RasA3 C2 domain se 91.3 0.98 2.1E-05 39.0 7.5 79 161-242 2-90 (148)
63 cd08401 C2A_RasA2_RasA3 C2 dom 91.2 1.3 2.8E-05 36.5 7.9 67 161-242 2-73 (121)
64 cd04046 C2_Calpain C2 domain p 91.2 1.2 2.6E-05 36.7 7.7 67 160-242 4-74 (126)
65 cd04026 C2_PKC_alpha_gamma C2 91.1 1.1 2.3E-05 36.8 7.4 73 159-242 13-91 (131)
66 cd08677 C2A_Synaptotagmin-13 C 90.9 1.2 2.6E-05 37.5 7.5 73 160-242 15-89 (118)
67 cd04033 C2_NEDD4_NEDD4L C2 dom 90.7 1.7 3.7E-05 35.5 8.2 69 161-242 2-78 (133)
68 cd08678 C2_C21orf25-like C2 do 90.1 1.7 3.6E-05 35.6 7.6 68 162-243 2-71 (126)
69 cd08686 C2_ABR C2 domain in th 90.0 1.5 3.3E-05 36.9 7.4 65 162-241 2-68 (118)
70 cd04042 C2A_MCTP_PRT C2 domain 89.7 0.58 1.3E-05 38.0 4.6 42 37-78 76-118 (121)
71 cd08377 C2C_MCTP_PRT C2 domain 89.6 2.2 4.7E-05 34.1 7.8 67 160-242 2-72 (119)
72 cd04042 C2A_MCTP_PRT C2 domain 89.6 1.8 3.9E-05 35.1 7.4 68 161-243 2-73 (121)
73 cd04028 C2B_RIM1alpha C2 domai 89.2 2 4.2E-05 37.2 7.6 68 160-240 30-104 (146)
74 cd08676 C2A_Munc13-like C2 dom 88.9 2.7 5.9E-05 36.5 8.4 73 157-241 26-128 (153)
75 cd04019 C2C_MCTP_PRT_plant C2 88.6 4.2 9.1E-05 35.0 9.3 68 161-242 2-73 (150)
76 cd00030 C2 C2 domain. The C2 d 88.1 2.5 5.5E-05 30.7 6.7 67 162-242 2-72 (102)
77 cd04027 C2B_Munc13 C2 domain s 87.9 3.7 8.1E-05 33.7 8.3 67 160-242 2-72 (127)
78 cd08374 C2F_Ferlin C2 domain s 87.7 3.8 8.2E-05 35.1 8.4 80 161-242 2-104 (133)
79 cd08383 C2A_RasGAP C2 domain ( 87.4 2.8 6E-05 33.3 7.0 68 161-241 2-70 (117)
80 cd08692 C2B_Tac2-N C2 domain s 87.3 3 6.5E-05 35.8 7.5 99 161-269 16-125 (135)
81 cd08400 C2_Ras_p21A1 C2 domain 87.3 3.3 7.3E-05 34.1 7.7 68 160-242 5-73 (126)
82 cd08675 C2B_RasGAP C2 domain s 86.6 3.4 7.5E-05 34.7 7.5 78 162-242 2-89 (137)
83 cd00275 C2_PLC_like C2 domain 86.5 4.1 8.8E-05 32.8 7.6 73 159-242 2-83 (128)
84 cd04016 C2_Tollip C2 domain pr 85.8 5.5 0.00012 33.2 8.2 68 160-242 3-73 (121)
85 cd08683 C2_C2cd3 C2 domain fou 85.0 1.2 2.7E-05 38.6 4.0 75 162-240 2-101 (143)
86 cd04038 C2_ArfGAP C2 domain pr 84.8 5.6 0.00012 34.1 8.0 66 161-242 4-72 (145)
87 cd08691 C2_NEDL1-like C2 domai 84.0 5.7 0.00012 33.8 7.7 69 159-241 1-83 (137)
88 cd04021 C2_E3_ubiquitin_ligase 83.1 7.3 0.00016 32.0 7.8 67 160-242 3-72 (125)
89 cd08373 C2A_Ferlin C2 domain f 80.9 7.4 0.00016 31.7 7.0 65 165-242 2-68 (127)
90 cd04047 C2B_Copine C2 domain s 80.4 9.3 0.0002 30.1 7.3 68 165-242 6-81 (110)
91 cd04049 C2_putative_Elicitor-r 80.1 13 0.00028 30.1 8.1 72 160-242 2-77 (124)
92 KOG1028|consensus 79.9 24 0.00053 35.6 11.6 74 159-242 298-377 (421)
93 cd08379 C2D_MCTP_PRT_plant C2 78.6 14 0.0003 31.0 8.1 66 161-242 2-74 (126)
94 cd04015 C2_plant_PLD C2 domain 77.8 12 0.00026 32.3 7.7 68 160-242 8-109 (158)
95 cd04014 C2_PKC_epsilon C2 doma 76.2 16 0.00035 29.9 7.7 65 161-241 6-84 (132)
96 cd04045 C2C_Tricalbin-like C2 75.9 15 0.00033 30.0 7.4 67 161-242 3-73 (120)
97 PF10358 NT-C2: N-terminal C2 74.2 33 0.00071 28.3 9.2 82 156-240 4-85 (143)
98 cd04044 C2A_Tricalbin-like C2 73.8 4.6 0.0001 32.3 3.8 42 37-78 80-121 (124)
99 cd04054 C2A_Rasal1_RasA4 C2 do 73.8 18 0.0004 29.3 7.4 67 161-242 2-72 (121)
100 cd08682 C2_Rab11-FIP_classI C2 71.8 5.4 0.00012 32.5 3.8 42 37-78 80-126 (126)
101 cd04048 C2A_Copine C2 domain f 70.5 17 0.00037 29.3 6.5 65 166-242 7-79 (120)
102 PF07162 B9-C2: Ciliary basal 70.4 40 0.00087 29.5 9.2 74 159-240 2-85 (168)
103 COG5038 Ca2+-dependent lipid-b 69.1 25 0.00055 40.0 9.1 65 161-239 1042-1110(1227)
104 cd08681 C2_fungal_Inn1p-like C 68.6 11 0.00024 30.0 4.9 40 38-78 78-117 (118)
105 cd08690 C2_Freud-1 C2 domain f 67.4 8.4 0.00018 33.7 4.2 43 37-79 94-136 (155)
106 cd08373 C2A_Ferlin C2 domain f 65.8 15 0.00033 29.8 5.3 44 37-80 72-116 (127)
107 cd08377 C2C_MCTP_PRT C2 domain 61.7 17 0.00037 28.8 4.8 41 36-78 75-117 (119)
108 cd08678 C2_C21orf25-like C2 do 60.7 19 0.00042 29.3 5.0 45 37-81 74-121 (126)
109 cd08394 C2A_Munc13 C2 domain f 59.8 68 0.0015 27.3 8.3 65 160-241 3-68 (127)
110 PF09308 LuxQ-periplasm: LuxQ, 56.8 13 0.00027 35.2 3.6 25 55-79 127-152 (238)
111 PF11618 DUF3250: Protein of u 53.3 22 0.00047 29.3 4.1 42 37-78 60-103 (107)
112 cd04033 C2_NEDD4_NEDD4L C2 dom 51.2 35 0.00075 27.7 5.0 42 37-78 82-131 (133)
113 cd08398 C2_PI3K_class_I_alpha 50.6 51 0.0011 28.9 6.2 75 160-242 9-85 (158)
114 cd04025 C2B_RasA1_RasA4 C2 dom 49.9 33 0.00071 27.6 4.7 41 37-77 76-122 (123)
115 cd08400 C2_Ras_p21A1 C2 domain 48.8 36 0.00079 27.9 4.8 39 39-77 79-120 (126)
116 PLN03008 Phospholipase D delta 45.7 37 0.00079 37.6 5.4 56 38-93 132-190 (868)
117 cd08693 C2_PI3K_class_I_beta_d 45.0 63 0.0014 28.6 6.0 75 160-242 9-87 (173)
118 KOG4027|consensus 44.4 86 0.0019 28.3 6.6 64 173-242 23-94 (187)
119 cd04051 C2_SRC2_like C2 domain 43.2 32 0.0007 27.7 3.6 39 37-75 82-125 (125)
120 cd00275 C2_PLC_like C2 domain 41.7 59 0.0013 25.9 4.9 39 37-78 86-126 (128)
121 KOG1028|consensus 41.6 71 0.0015 32.3 6.5 75 158-242 166-244 (421)
122 cd04013 C2_SynGAP_like C2 doma 41.2 47 0.001 28.8 4.5 33 37-69 86-118 (146)
123 cd04036 C2_cPLA2 C2 domain pre 40.9 39 0.00085 27.0 3.8 38 37-77 78-115 (119)
124 cd04015 C2_plant_PLD C2 domain 40.7 42 0.00092 28.9 4.2 40 39-78 114-156 (158)
125 PLN03200 cellulose synthase-in 39.9 77 0.0017 38.5 7.2 69 160-241 1981-2051(2102)
126 PF05688 DUF824: Salmonella re 38.7 37 0.0008 24.2 2.8 24 154-177 10-33 (47)
127 cd04022 C2A_MCTP_PRT_plant C2 38.0 77 0.0017 25.7 5.1 42 37-78 80-124 (127)
128 cd04016 C2_Tollip C2 domain pr 38.0 68 0.0015 26.6 4.8 7 27-33 45-51 (121)
129 KOG3837|consensus 37.3 27 0.00059 35.8 2.7 42 37-78 460-501 (523)
130 cd08401 C2A_RasA2_RasA3 C2 dom 36.4 99 0.0021 25.2 5.5 40 38-77 78-119 (121)
131 cd08378 C2B_MCTP_PRT_plant C2 35.3 68 0.0015 26.1 4.4 42 37-78 71-118 (121)
132 PLN02270 phospholipase D alpha 35.2 66 0.0014 35.5 5.4 55 38-92 103-160 (808)
133 PF14827 Cache_3: Sensory doma 35.0 41 0.00089 27.2 3.0 51 27-77 61-111 (116)
134 PF00571 CBS: CBS domain CBS d 34.4 46 0.00099 22.6 2.8 18 57-74 30-47 (57)
135 cd04040 C2D_Tricalbin-like C2 33.7 45 0.00098 26.2 3.0 37 38-74 77-113 (115)
136 cd08391 C2A_C2C_Synaptotagmin_ 30.6 72 0.0016 25.1 3.8 37 38-77 83-119 (121)
137 cd04054 C2A_Rasal1_RasA4 C2 do 29.2 1.1E+02 0.0023 24.7 4.6 42 37-78 76-120 (121)
138 cd04012 C2A_PI3K_class_II C2 d 28.9 1.7E+02 0.0036 25.6 6.0 81 158-244 7-95 (171)
139 PLN02352 phospholipase D epsil 26.8 82 0.0018 34.5 4.3 57 38-94 85-144 (758)
140 PF14924 DUF4497: Protein of u 24.9 1.2E+02 0.0025 24.8 4.1 43 36-78 46-102 (112)
141 PF02743 Cache_1: Cache domain 23.9 1.5E+02 0.0033 21.9 4.3 20 59-78 18-37 (81)
142 cd04019 C2C_MCTP_PRT_plant C2 23.5 1.3E+02 0.0028 25.7 4.2 15 38-52 78-92 (150)
143 cd04046 C2_Calpain C2 domain p 22.7 1.1E+02 0.0025 24.8 3.6 40 38-79 78-121 (126)
144 cd04021 C2_E3_ubiquitin_ligase 22.6 1.8E+02 0.0039 23.7 4.8 41 37-77 76-124 (125)
145 cd04024 C2A_Synaptotagmin-like 22.2 1.4E+02 0.003 23.7 4.0 40 38-77 80-126 (128)
146 cd08376 C2B_MCTP_PRT C2 domain 22.2 1.7E+02 0.0037 22.9 4.5 37 37-77 76-112 (116)
147 cd08379 C2D_MCTP_PRT_plant C2 21.6 1.2E+02 0.0026 25.3 3.6 39 37-75 84-125 (126)
148 PF12416 DUF3668: Cep120 prote 21.3 2.7E+02 0.0059 27.6 6.5 73 161-241 2-75 (340)
149 cd04014 C2_PKC_epsilon C2 doma 21.1 1.7E+02 0.0037 23.8 4.4 15 38-52 90-104 (132)
150 cd08380 C2_PI3K_like C2 domain 20.5 2.7E+02 0.0058 23.6 5.6 75 160-243 9-89 (156)
151 cd08375 C2_Intersectin C2 doma 20.4 1.7E+02 0.0038 24.4 4.3 37 38-77 92-133 (136)
152 COG3940 Predicted beta-xylosid 20.4 53 0.0011 31.2 1.3 25 273-297 259-290 (324)
153 KOG0696|consensus 20.4 2E+02 0.0043 30.1 5.4 72 160-242 181-258 (683)
154 smart00116 CBS Domain in cysta 20.3 90 0.0019 18.9 2.1 17 58-74 24-40 (49)
No 1
>KOG0241|consensus
Probab=100.00 E-value=2.8e-50 Score=414.45 Aligned_cols=229 Identities=23% Similarity=0.357 Sum_probs=193.1
Q ss_pred ChhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeeEeecccccccCcceeeeEEcCCCCeeEEEEEEEEEe
Q psy7271 1 MMREMYHNEAEMSPTSPDYNIESLTGGDPFYDRFPWFRLVGRAFVYLSNLMYPIPLIQKVAIVNEKGDVKGHLKIAVQIV 80 (305)
Q Consensus 1 lMrEmYq~~~e~~~~~~d~~~~~~~~~DPFyd~~~~~~lIGrA~VyL~nL~y~V~l~~~V~Ivs~~Gev~G~L~V~V~p~ 80 (305)
+||||||.|++.-.. ......+..|||||.+++|+|||+|||||++|+|+|+|+|+||||||+|+|+|+|+|+|.++
T Consensus 737 DMRd~Yqe~ke~~~~---~~~~~~k~~DPFyesQEnhnLiGVANvFLE~LF~DvkL~Y~vPIIsQqGEVAGRLhVev~Rv 813 (1714)
T KOG0241|consen 737 DMRDLYQEWKEKVPP---AKRLYGKRGDPFYESQENHNLIGVANVFLEVLFHDVKLQYAVPIISQQGEVAGRLHVEVMRV 813 (1714)
T ss_pred hHHHHHHHHHhcCCc---hhhhccccCCccccccccccchhhHHHHHHHHHhhheeccccceecccccccceeEEEEEEe
Confidence 599999999987642 23456778999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcCccccccccceeeeeccccccccCCceeeecCCCCCCCCCCCccCCCCCCCCCCccCCCCCCCCCCCCCCCCeeE
Q psy7271 81 TDEESTDLTGTVKQSARIIFDDDQQTGRNNKKAVEDSGHQGDKVEDSECDGDSGRGDSSICSDVKEEEPPPHLSPGTELQ 160 (305)
Q Consensus 81 ~~~~~~~~~~~v~qs~~~~f~~d~~~~~~~~r~veg~~~~~~~~~e~~~~~~~~~~dss~~~~~~~~e~p~~L~lG~~~~ 160 (305)
+++.+.+ ++.| +++. +. ..|.. ..+++++
T Consensus 814 ~gq~~~~-------------------------~~gg--------dev~-e~----------------~~~~~-~~~~~lt 842 (1714)
T KOG0241|consen 814 TGQVPER-------------------------VVGG--------DEVV-ES----------------SGEII-HRVKKLT 842 (1714)
T ss_pred ccccchh-------------------------hccc--------cccc-cC----------------CCccc-cccceEE
Confidence 9888764 2211 0110 00 01323 3899999
Q ss_pred EEEEEeeccCCCcccCc-eEEEEEeCCCCccceeeCcccCCC-----CCCCeeeeEEEEEEEeecCCccccccccCCcEE
Q psy7271 161 FRITVLQAVGISTEYSD-IFCQFNFLHRHDEAFSTEPVKNTG-----KGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQI 234 (305)
Q Consensus 161 FrVtIlqAsGLp~~ysd-VFCQy~F~~~~ee~fsTePvknt~-----~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L~ 234 (305)
|||+|++|+|||..+++ |||||+||+++|.+.+ .|+.+.. ...++.|+|++.|+|+|||| ||+|+.+++|+
T Consensus 843 CrVkIk~AtGLP~~LSnFVFCqYtFw~~~E~~vv-aP~vd~ss~~~~~~~~v~FeH~~df~V~vtEe--FlE~~~dgALa 919 (1714)
T KOG0241|consen 843 CRVKIKEATGLPLNLSNFVFCQYTFWDQQESTVV-APVVDPSSQSKDAQYTVIFEHCKDFVVNVTEE--FLEHISDGALA 919 (1714)
T ss_pred EEEEEeeccCCcccccceEEEEeeecccccceee-eeccccccccCCCCeEEEeecccceEEeehHH--HHHHhhcCceE
Confidence 99999999999999999 9999999999996665 4654431 13478899999999999999 99999999999
Q ss_pred EEEeeccccccccc-----ccccccccccccccccccc-----------------CcccccceeecCCCccccce
Q psy7271 235 YQVWCSPLALYITS-----VCQPLMVNMSRLWWSTVMN-----------------SRVEAYSCFTREYRGVFDLP 287 (305)
Q Consensus 235 fEVwG~~~~~~~~~-----~~~~~~~~~~r~~~~~~~~-----------------~~v~~~~~~~~~~~~~~d~~ 287 (305)
|||||||.++.... .+|++ +|+++.||.+|++ +||+..++.+.+++|+|+|-
T Consensus 920 IEVwGHr~~g~~~~iwe~d~~qaK-trsL~dRW~EvtRriE~Wvei~ElNenGey~~VEv~~a~dV~TGGI~QLr 993 (1714)
T KOG0241|consen 920 IEVWGHRIAGNGSSIWEVDSLQAK-TRSLHDRWNEVTRRIEMWVEILELNENGEYAPVEVHQAKDVNTGGIFQLR 993 (1714)
T ss_pred EEEeeccccCCCcccccchhhhhh-hhHHHHHHHHHHHHHHHHHHHHHhccCCCcceeEEeecccccccceeEec
Confidence 99999999875443 56885 9999999999998 59999999999999998873
No 2
>KOG0245|consensus
Probab=100.00 E-value=9.2e-35 Score=303.28 Aligned_cols=250 Identities=33% Similarity=0.512 Sum_probs=209.2
Q ss_pred ChhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeeEeecccccccCcceeeeEEcCCCCeeEEEEEEEEEe
Q psy7271 1 MMREMYHNEAEMSPTSPDYNIESLTGGDPFYDRFPWFRLVGRAFVYLSNLMYPIPLIQKVAIVNEKGDVKGHLKIAVQIV 80 (305)
Q Consensus 1 lMrEmYq~~~e~~~~~~d~~~~~~~~~DPFyd~~~~~~lIGrA~VyL~nL~y~V~l~~~V~Ivs~~Gev~G~L~V~V~p~ 80 (305)
+||+||....+......++.++..++.||||++++|+.++| ++|||+||+|++||.++++|++.+|+++|.|+|+++|+
T Consensus 748 ~~R~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g-~~~~l~~l~~~~~l~~~~~~~~~~g~~kg~lt~~~~~~ 826 (1221)
T KOG0245|consen 748 MIRELGEQEAEMATSDGDESEDIATGSDPFYERRHWFKLLG-ILVRLSSLAYPVPLIAKKAIVELQGQEKGMLTVAVQPV 826 (1221)
T ss_pred HHHHhchhhhhhcccCCCccccccccCCccccchhHHHHHH-HHHHHHhcccchhHHHhhhhhhhhccccceeeeecccc
Confidence 48999999999988888888999999999999999999999 89999999999999999999999999999999999999
Q ss_pred cCCCcCccccccccceeeeeccccccccCCceeeecCCCCCCCCCCCccCCCCCCCCCCccCCCCCCCCCCCCCCCCeeE
Q psy7271 81 TDEESTDLTGTVKQSARIIFDDDQQTGRNNKKAVEDSGHQGDKVEDSECDGDSGRGDSSICSDVKEEEPPPHLSPGTELQ 160 (305)
Q Consensus 81 ~~~~~~~~~~~v~qs~~~~f~~d~~~~~~~~r~veg~~~~~~~~~e~~~~~~~~~~dss~~~~~~~~e~p~~L~lG~~~~ 160 (305)
..++.+. |- .+++.+++.+.. +++ ++.+.++++|..++
T Consensus 827 ~~d~e~~-------------d~------e~~~~~~~~~~~----~~v-------------------s~~~~~~~~~~~~~ 864 (1221)
T KOG0245|consen 827 EADDEEL-------------DY------EELRIVHGQGAA----EEV-------------------SAILEDLQSGLSFT 864 (1221)
T ss_pred ccCCccc-------------ch------hhhccccccCch----hhc-------------------cccccccccCCCcc
Confidence 8655442 11 112445443310 111 12356788999999
Q ss_pred EEEEEeeccCCCcccCceEEEEEeCCCCccceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcEEEEEeec
Q psy7271 161 FRITVLQAVGISTEYSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQIYQVWCS 240 (305)
Q Consensus 161 FrVtIlqAsGLp~~ysdVFCQy~F~~~~ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L~fEVwG~ 240 (305)
|++++.+|.+++.++.++||||+|+++++++++++|++|++.|++..|+|++++.++++++ ++.|+++.+..||+|||
T Consensus 865 ~~~s~~~a~~~~~~~~~~~~~~~fl~~~~~~~s~~~l~~~g~~~~~~~~h~~~~~~~~~~~--~~~~~~s~~~~~eq~~~ 942 (1221)
T KOG0245|consen 865 FRVSVIEAVDIAMEDLDSNCQERFLHRKDEALSGTPLQNSGRGGPGVRYHVTNFAVKIDKS--EVFYFKSNPQHFEQFGH 942 (1221)
T ss_pred cchhhhhhccchhhhhhcccchhhccccccccccCccccCCCCCCcccccccccccccccc--hhhhhccCcceeeeccc
Confidence 9999999999999999999999999999999999999999999999999999999999999 89999999999999998
Q ss_pred cc------cccccccccccccccccccccccccC--cccc--cceeec----CCCccccceeeeeccccCC
Q psy7271 241 PL------ALYITSVCQPLMVNMSRLWWSTVMNS--RVEA--YSCFTR----EYRGVFDLPLYTNKCPKYD 297 (305)
Q Consensus 241 ~~------~~~~~~~~~~~~~~~~r~~~~~~~~~--~v~~--~~~~~~----~~~~~~d~~~~~~~~~~~~ 297 (305)
-. +.-+.+.+++ ++..|++++++|++ |||+ +..... .-.++||+|+||+|||+-.
T Consensus 943 ~q~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~~~k~l~~~L~~fe~~e~~~ 1011 (1221)
T KOG0245|consen 943 YQSGQQPSPLSPQELVSP--TRCSRERRPPSMPRSKPVRATSLAKLSANRNGSVKSLETLLQWFEICEHEA 1011 (1221)
T ss_pred cccccccCCccchhcccc--cccchhccCCCccccccccchHHHhhhhhccchhhcchhhHHHhhhhhhhc
Confidence 55 3344445555 48888999988877 7777 333333 3344999999999999864
No 3
>PF12423 KIF1B: Kinesin protein 1B; InterPro: IPR022140 This domain family is found in eukaryotes, and is approximately 50 amino acids in length. The family is found in association with PF00225 from PFAM, PF00498 from PFAM. KIF1B is an anterograde motor for transport of mitochondria in axons of neuronal cells.
Probab=99.05 E-value=6e-11 Score=83.41 Aligned_cols=39 Identities=31% Similarity=0.430 Sum_probs=30.3
Q ss_pred ChhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCceEEEEe
Q psy7271 1 MMREMYHNEAEMSPTSPDYNIESLTGGDPFYDRFPWFRLVGR 42 (305)
Q Consensus 1 lMrEmYq~~~e~~~~~~d~~~~~~~~~DPFyd~~~~~~lIGr 42 (305)
+||||||++++.+... .....++.|||||+++|++|||+
T Consensus 7 ~MRemYq~~~~~~~~~---~~~~~~~~DPF~e~~e~~~lIGv 45 (45)
T PF12423_consen 7 DMREMYQQYKENDFPE---YDQHFKEDDPFYEPQENHSLIGV 45 (45)
T ss_pred HHHHHHHHHHhcCCcc---ccccCCCCCCCCCCCccccccCc
Confidence 5999999996433211 22377889999999999999996
No 4
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=96.76 E-value=0.015 Score=42.78 Aligned_cols=70 Identities=16% Similarity=0.213 Sum_probs=51.9
Q ss_pred EEEEeeccCCCc-c---cCceEEEEEeCCCCccceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcEEEEE
Q psy7271 162 RITVLQAVGIST-E---YSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQIYQV 237 (305)
Q Consensus 162 rVtIlqAsGLp~-~---ysdVFCQy~F~~~~ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L~fEV 237 (305)
+|+|.+|.||+. . ..+.||+..+.......+.|...+++ ..+.|+.. |.+.+... .. + .|.|+|
T Consensus 2 ~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~---~~P~w~e~--~~~~~~~~--~~---~--~l~~~V 69 (85)
T PF00168_consen 2 TVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNT---SNPVWNEE--FEFPLDDP--DL---D--SLSFEV 69 (85)
T ss_dssp EEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSB---SSEEEEEE--EEEEESHG--CG---T--EEEEEE
T ss_pred EEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeecc---ccceeeee--eeeeeecc--cc---c--ceEEEE
Confidence 689999999997 2 34599999999876667888888777 35778854 55555554 22 2 299999
Q ss_pred eecccc
Q psy7271 238 WCSPLA 243 (305)
Q Consensus 238 wG~~~~ 243 (305)
|....-
T Consensus 70 ~~~~~~ 75 (85)
T PF00168_consen 70 WDKDSF 75 (85)
T ss_dssp EEETSS
T ss_pred EECCCC
Confidence 987543
No 5
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=96.20 E-value=0.03 Score=45.13 Aligned_cols=74 Identities=12% Similarity=0.151 Sum_probs=52.9
Q ss_pred EEEEEEeeccCCCc-----ccCceEEEEEeCCCCccceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcEE
Q psy7271 160 QFRITVLQAVGIST-----EYSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQI 234 (305)
Q Consensus 160 ~FrVtIlqAsGLp~-----~ysdVFCQy~F~~~~ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L~ 234 (305)
..+|+|.+|.+|+. ..+|-||+..+.........|+-++++ ..+.|+.+-.|. ++.. -+ ..+..|.
T Consensus 2 ~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t---~nP~Wne~f~f~--~~~~--~~--~~~~~l~ 72 (111)
T cd04041 2 VLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKD---LNPVWEETWFVL--VTPD--EV--KAGERLS 72 (111)
T ss_pred EEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCC---CCCccceeEEEE--eCch--hc--cCCCEEE
Confidence 46899999999985 356799999987655556788887776 356788775443 4332 11 3456799
Q ss_pred EEEeeccc
Q psy7271 235 YQVWCSPL 242 (305)
Q Consensus 235 fEVwG~~~ 242 (305)
|+||-+..
T Consensus 73 ~~V~d~d~ 80 (111)
T cd04041 73 CRLWDSDR 80 (111)
T ss_pred EEEEeCCC
Confidence 99998854
No 6
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=96.10 E-value=0.03 Score=46.93 Aligned_cols=71 Identities=15% Similarity=0.189 Sum_probs=55.7
Q ss_pred EEEEEeeccCCCc----ccCceEEEEEeCCCCc---cceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcE
Q psy7271 161 FRITVLQAVGIST----EYSDIFCQFNFLHRHD---EAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQ 233 (305)
Q Consensus 161 FrVtIlqAsGLp~----~ysdVFCQy~F~~~~e---e~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L 233 (305)
..|+|.+|.+|++ ..+|.|++-..+.+.. ..+.|...+++ ..+.|++. |++.|+.+ . |++..|
T Consensus 16 L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t---~nPvfnE~--F~f~v~~~--~---L~~~~L 85 (124)
T cd08680 16 LVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQ---DKPVFNEV--FRVPISST--K---LYQKTL 85 (124)
T ss_pred EEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCC---CCCccccE--EEEECCHH--H---hhcCEE
Confidence 6789999999986 3678999999987663 36778877666 35678888 66667776 3 688999
Q ss_pred EEEEeecc
Q psy7271 234 IYQVWCSP 241 (305)
Q Consensus 234 ~fEVwG~~ 241 (305)
.|.||.+.
T Consensus 86 ~~~V~~~~ 93 (124)
T cd08680 86 QVDVCSVG 93 (124)
T ss_pred EEEEEeCC
Confidence 99999974
No 7
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=96.02 E-value=0.0043 Score=51.29 Aligned_cols=55 Identities=18% Similarity=0.260 Sum_probs=32.6
Q ss_pred eEEEEEeCCCCccceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcEEEEEeec
Q psy7271 178 IFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQIYQVWCS 240 (305)
Q Consensus 178 VFCQy~F~~~~ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L~fEVwG~ 240 (305)
+||-|.|+. +| +-+|+-+. |..+.|+.+-.+.|.+..- |++|||++.+.+|++=-
T Consensus 1 tFct~dFyd-fE-tq~Tpvv~----G~~p~y~fts~y~V~~d~~--fl~YLq~~~~~lELhqa 55 (107)
T PF11618_consen 1 TFCTYDFYD-FE-TQTTPVVR----GLNPFYDFTSQYKVTMDDL--FLHYLQTGSLTLELHQA 55 (107)
T ss_dssp EEEEE-STT-----EE---EE----SSS----EEEEEEE--SHH--HHHHHHH--EEEEEEEE
T ss_pred CEEEEEeec-ee-eeccccee----CCCccceeEEEEEEEcCHH--HHHHhhcCCEEEEEEee
Confidence 699999997 44 45554443 2356788888898888887 99999999999999854
No 8
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=96.01 E-value=0.034 Score=45.28 Aligned_cols=73 Identities=16% Similarity=0.221 Sum_probs=53.2
Q ss_pred EEEEEEeeccCCCcc----cCceEEEEEeCCCCccceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcEEE
Q psy7271 160 QFRITVLQAVGISTE----YSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQIY 235 (305)
Q Consensus 160 ~FrVtIlqAsGLp~~----ysdVFCQy~F~~~~ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L~f 235 (305)
+++|+|.+|.+|+.. .+|.||+..+.......+.|+.++++ ..+.|+.+ |.+.++.+ . +++..|.|
T Consensus 17 ~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t---~nP~wne~--f~f~i~~~--~---l~~~~l~~ 86 (124)
T cd08385 17 QLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKT---LNPVFNET--FTFKVPYS--E---LGNKTLVF 86 (124)
T ss_pred EEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCC---CCCceeee--EEEeCCHH--H---hCCCEEEE
Confidence 478999999999853 46799999887655456778877766 35678877 44455554 2 35678999
Q ss_pred EEeeccc
Q psy7271 236 QVWCSPL 242 (305)
Q Consensus 236 EVwG~~~ 242 (305)
+||.+..
T Consensus 87 ~V~d~d~ 93 (124)
T cd08385 87 SVYDFDR 93 (124)
T ss_pred EEEeCCC
Confidence 9998753
No 9
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=95.95 E-value=0.045 Score=44.97 Aligned_cols=72 Identities=19% Similarity=0.166 Sum_probs=51.3
Q ss_pred EEEEEeeccCCCcc----cCceEEEEEeCCCCccceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcEEEE
Q psy7271 161 FRITVLQAVGISTE----YSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQIYQ 236 (305)
Q Consensus 161 FrVtIlqAsGLp~~----ysdVFCQy~F~~~~ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L~fE 236 (305)
.+|+|++|.||+.. .+|-||+..+.. ....|..++++ ..+.|+..-.|. +... ..+-.....|.|+
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~---~~~kT~v~~~t---~nP~Wne~f~F~--v~~~--~~~~~~~~~l~~~ 70 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGK---EKYSTSVKEKT---TSPVWKEECSFE--LPGL--LSGNGNRATLQLT 70 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEECC---eeeeeeeecCC---CCCEeCceEEEE--ecCc--ccCCCcCCEEEEE
Confidence 37999999999854 467999998853 34678877776 356788875554 4443 2233566789999
Q ss_pred Eeeccc
Q psy7271 237 VWCSPL 242 (305)
Q Consensus 237 VwG~~~ 242 (305)
||.+..
T Consensus 71 v~d~~~ 76 (126)
T cd08682 71 VMHRNL 76 (126)
T ss_pred EEEccc
Confidence 999854
No 10
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=95.94 E-value=0.039 Score=44.94 Aligned_cols=73 Identities=12% Similarity=0.043 Sum_probs=53.2
Q ss_pred EEEEEEeeccCCCcc----cCceEEEEEeCCCC--ccceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcE
Q psy7271 160 QFRITVLQAVGISTE----YSDIFCQFNFLHRH--DEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQ 233 (305)
Q Consensus 160 ~FrVtIlqAsGLp~~----ysdVFCQy~F~~~~--ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L 233 (305)
.++|+|++|.+|+.. .+|.||+..+.... .....|+.++++. .+.|+++ |.+.++.+ . +++..|
T Consensus 17 ~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~---nP~wne~--f~f~i~~~--~---l~~~~l 86 (127)
T cd04030 17 KLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNL---NPVFDET--FEFPVSLE--E---LKRRTL 86 (127)
T ss_pred EEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCC---CCEECeE--EEEecCHH--H---hcCCEE
Confidence 378999999999853 46799999997643 2356788887763 5679887 44456554 2 467789
Q ss_pred EEEEeeccc
Q psy7271 234 IYQVWCSPL 242 (305)
Q Consensus 234 ~fEVwG~~~ 242 (305)
.|.||.+..
T Consensus 87 ~i~v~~~~~ 95 (127)
T cd04030 87 DVAVKNSKS 95 (127)
T ss_pred EEEEEECCc
Confidence 999998753
No 11
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=95.89 E-value=0.036 Score=46.20 Aligned_cols=74 Identities=11% Similarity=0.158 Sum_probs=53.2
Q ss_pred eEEEEEEeeccCCCc-----ccCceEEEEEeCCCCccceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcE
Q psy7271 159 LQFRITVLQAVGIST-----EYSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQ 233 (305)
Q Consensus 159 ~~FrVtIlqAsGLp~-----~ysdVFCQy~F~~~~ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L 233 (305)
-+++|+|.+|.+||. ..+|.||+..+.........|+.++++ ..+.|+.+-.|. .++.+ - +++..|
T Consensus 16 ~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t---~nP~wnE~F~f~-~~~~~--~---~~~~~L 86 (128)
T cd08388 16 KALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKT---RNPVYDETFTFY-GIPYN--Q---LQDLSL 86 (128)
T ss_pred CEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCC---CCCceeeEEEEc-ccCHH--H---hCCCEE
Confidence 367899999999996 346899999997655545678877776 356788774441 34433 2 456689
Q ss_pred EEEEeecc
Q psy7271 234 IYQVWCSP 241 (305)
Q Consensus 234 ~fEVwG~~ 241 (305)
.|+||-+.
T Consensus 87 ~~~V~d~d 94 (128)
T cd08388 87 HFAVLSFD 94 (128)
T ss_pred EEEEEEcC
Confidence 99999874
No 12
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=95.73 E-value=0.048 Score=47.79 Aligned_cols=75 Identities=13% Similarity=0.255 Sum_probs=53.1
Q ss_pred EEEeeccC--CCcc----cCceEEEEEeCC--CCccceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcEE
Q psy7271 163 ITVLQAVG--ISTE----YSDIFCQFNFLH--RHDEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQI 234 (305)
Q Consensus 163 VtIlqAsG--Lp~~----ysdVFCQy~F~~--~~ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L~ 234 (305)
|+|..|.| ||.. .+|.|++|.|.. +......|.-+++|. ++.|+..-.|.|+-.... |...+++.+|.
T Consensus 6 l~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~Tl---nPvfNE~f~f~I~~~~~~-~~R~l~~~~L~ 81 (155)
T cd08690 6 LTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTN---SPEYNESFKLNINRKHRS-FQRVFKRHGLK 81 (155)
T ss_pred EEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCC---CCcccceEEEEeccccch-hhhhccCCcEE
Confidence 57777777 4543 467999999843 333467788888873 567999988877543221 55578999999
Q ss_pred EEEeecc
Q psy7271 235 YQVWCSP 241 (305)
Q Consensus 235 fEVwG~~ 241 (305)
||||=+.
T Consensus 82 ~~V~d~~ 88 (155)
T cd08690 82 FEVYHKG 88 (155)
T ss_pred EEEEeCC
Confidence 9999764
No 13
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=95.73 E-value=0.046 Score=44.68 Aligned_cols=73 Identities=18% Similarity=0.177 Sum_probs=53.2
Q ss_pred EEEEEEeeccCCCcc----cCceEEEEEeCCCCcc--ceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcE
Q psy7271 160 QFRITVLQAVGISTE----YSDIFCQFNFLHRHDE--AFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQ 233 (305)
Q Consensus 160 ~FrVtIlqAsGLp~~----ysdVFCQy~F~~~~ee--~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L 233 (305)
++.|+|.+|.+|+.. .+|.||+..+.....+ ...|+.++++ ..+.|+.+ |.+.++.. . ++...|
T Consensus 15 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~---~~P~wne~--f~f~i~~~--~---l~~~~l 84 (134)
T cd00276 15 RLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGT---LNPVFNEA--FSFDVPAE--Q---LEEVSL 84 (134)
T ss_pred EEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecC---CCCeeeee--EEEECCHH--H---hCCcEE
Confidence 478999999999863 5679999999776443 3467766655 35678876 55557665 3 467789
Q ss_pred EEEEeeccc
Q psy7271 234 IYQVWCSPL 242 (305)
Q Consensus 234 ~fEVwG~~~ 242 (305)
.|+||.+..
T Consensus 85 ~~~v~d~~~ 93 (134)
T cd00276 85 VITVVDKDS 93 (134)
T ss_pred EEEEEecCC
Confidence 999999754
No 14
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=95.63 E-value=0.041 Score=44.18 Aligned_cols=75 Identities=13% Similarity=0.008 Sum_probs=53.9
Q ss_pred CeeEEEEEEeeccCCCcccCceEEEEEeCCCCccceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcEEEE
Q psy7271 157 TELQFRITVLQAVGISTEYSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQIYQ 236 (305)
Q Consensus 157 ~~~~FrVtIlqAsGLp~~ysdVFCQy~F~~~~ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L~fE 236 (305)
+.+..+|+|.+|.+|+...+|-||+.++.++. ..|...+++ ..+.|+.+-.|.+....+ -+++..|.|+
T Consensus 2 ~~~~l~V~v~~a~~L~~~~~dpyv~v~~~~~~---~kT~~~~~t---~nP~wne~f~f~~~~~~~-----~l~~~~l~i~ 70 (111)
T cd04011 2 QDFQVRVRVIEARQLVGGNIDPVVKVEVGGQK---KYTSVKKGT---NCPFYNEYFFFNFHESPD-----ELFDKIIKIS 70 (111)
T ss_pred CcEEEEEEEEEcccCCCCCCCCEEEEEECCEe---eeeeEEecc---CCCccccEEEEecCCCHH-----HHhcCeEEEE
Confidence 46789999999999997778899999998643 346655555 345688665554333332 2467789999
Q ss_pred Eeeccc
Q psy7271 237 VWCSPL 242 (305)
Q Consensus 237 VwG~~~ 242 (305)
||.+..
T Consensus 71 V~d~~~ 76 (111)
T cd04011 71 VYDSRS 76 (111)
T ss_pred EEcCcc
Confidence 999754
No 15
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=95.58 E-value=0.057 Score=44.03 Aligned_cols=73 Identities=11% Similarity=0.146 Sum_probs=53.6
Q ss_pred EEEEEEeeccCCCcc----cCceEEEEEeCCCCccceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcEEE
Q psy7271 160 QFRITVLQAVGISTE----YSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQIY 235 (305)
Q Consensus 160 ~FrVtIlqAsGLp~~----ysdVFCQy~F~~~~ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L~f 235 (305)
..+|+|.+|.+|+.. .+|.||+..+.......+.|+.++++ ..+.|+.. |.+.++.+ . +.+..|.|
T Consensus 17 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t---~~P~wne~--f~f~v~~~--~---l~~~~l~i 86 (124)
T cd08387 17 ILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKT---LNPEFDES--FVFEVPPQ--E---LPKRTLEV 86 (124)
T ss_pred EEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCC---CCCCcccE--EEEeCCHH--H---hCCCEEEE
Confidence 467999999999853 46799999986544446778877776 34568776 55567765 3 46778999
Q ss_pred EEeeccc
Q psy7271 236 QVWCSPL 242 (305)
Q Consensus 236 EVwG~~~ 242 (305)
+||.+..
T Consensus 87 ~V~d~~~ 93 (124)
T cd08387 87 LLYDFDQ 93 (124)
T ss_pred EEEECCC
Confidence 9998743
No 16
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=95.56 E-value=0.077 Score=43.03 Aligned_cols=70 Identities=16% Similarity=0.171 Sum_probs=50.3
Q ss_pred EEEEEeeccCCCcc----cCceEEEEEeCCCCccceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcEEEE
Q psy7271 161 FRITVLQAVGISTE----YSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQIYQ 236 (305)
Q Consensus 161 FrVtIlqAsGLp~~----ysdVFCQy~F~~~~ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L~fE 236 (305)
++|+|.+|.+|+.. .+|-||+..+.+.......|+.++++ .++.|+..-.| .+... ....|.|+
T Consensus 2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t---~nP~Wne~f~f--~i~~~-------~~~~l~v~ 69 (119)
T cd04036 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNS---INPVWNETFEF--RIQSQ-------VKNVLELT 69 (119)
T ss_pred eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCC---CCCccceEEEE--EeCcc-------cCCEEEEE
Confidence 47999999999864 46799999987655556778888776 35678876444 45443 23469999
Q ss_pred Eeeccc
Q psy7271 237 VWCSPL 242 (305)
Q Consensus 237 VwG~~~ 242 (305)
||.+..
T Consensus 70 v~d~d~ 75 (119)
T cd04036 70 VMDEDY 75 (119)
T ss_pred EEECCC
Confidence 999754
No 17
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=95.45 E-value=0.067 Score=43.29 Aligned_cols=73 Identities=12% Similarity=0.174 Sum_probs=51.9
Q ss_pred EEEEEEeeccCCCcc-----cCceEEEEEeCCCCccceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcEE
Q psy7271 160 QFRITVLQAVGISTE-----YSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQI 234 (305)
Q Consensus 160 ~FrVtIlqAsGLp~~-----ysdVFCQy~F~~~~ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L~ 234 (305)
.+.|+|.+|.+|+.. .+|.||+..+..+......|+..+++ ..+.|+.+ |++.++.. - +++..|.
T Consensus 15 ~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~---~~P~wne~--f~f~i~~~--~---l~~~~l~ 84 (123)
T cd08390 15 QLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKT---QNPNFDET--FVFQVSFK--E---LQRRTLR 84 (123)
T ss_pred EEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCC---CCCccceE--EEEEcCHH--H---hcccEEE
Confidence 467999999999853 45799999987655545667766665 35678776 45556554 2 3566899
Q ss_pred EEEeeccc
Q psy7271 235 YQVWCSPL 242 (305)
Q Consensus 235 fEVwG~~~ 242 (305)
|+||.+..
T Consensus 85 i~v~d~~~ 92 (123)
T cd08390 85 LSVYDVDR 92 (123)
T ss_pred EEEEECCc
Confidence 99998754
No 18
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=95.35 E-value=0.061 Score=44.46 Aligned_cols=73 Identities=16% Similarity=0.175 Sum_probs=53.6
Q ss_pred EEEEEEeeccCCCcc-----cCceEEEEEeCCCCc--cceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCc
Q psy7271 160 QFRITVLQAVGISTE-----YSDIFCQFNFLHRHD--EAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTS 232 (305)
Q Consensus 160 ~FrVtIlqAsGLp~~-----ysdVFCQy~F~~~~e--e~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~ 232 (305)
...|+|++|.+|++. .+|.|++..++.... ....|+.++++ .++.|+.+ |.+.++.+ . +++..
T Consensus 16 ~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t---~nP~~nE~--f~f~v~~~--~---l~~~~ 85 (125)
T cd08393 16 ELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKT---LNPVFNET--LRYKVERE--E---LPTRV 85 (125)
T ss_pred EEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCC---CCCccCce--EEEECCHH--H---hCCCE
Confidence 368999999999963 467999999976543 23567777777 35678877 55567665 3 47778
Q ss_pred EEEEEeeccc
Q psy7271 233 QIYQVWCSPL 242 (305)
Q Consensus 233 L~fEVwG~~~ 242 (305)
|.|+||.+..
T Consensus 86 L~~~V~d~~~ 95 (125)
T cd08393 86 LNLSVWHRDS 95 (125)
T ss_pred EEEEEEeCCC
Confidence 9999999753
No 19
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=95.27 E-value=0.21 Score=41.71 Aligned_cols=76 Identities=20% Similarity=0.235 Sum_probs=51.0
Q ss_pred eEEEEEEeeccCCCc----ccCceEEEEEeCCCCccceeeCcccCCCCCCCeeeeEEEEEEE-eecCCccccccccC-Cc
Q psy7271 159 LQFRITVLQAVGIST----EYSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNLTS-ATAAHAAPLHPHQS-TS 232 (305)
Q Consensus 159 ~~FrVtIlqAsGLp~----~ysdVFCQy~F~~~~ee~fsTePvknt~~~~~~~F~hvq~~~V-~VTee~~fl~yl~~-~~ 232 (305)
+.++|+|.+|.+|+. ..+|-||...+.+. ...|+.++++ .++.|+..-.|.+ .+... .-++..+ ..
T Consensus 1 ~~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~---~~kT~v~~~t---~nP~Wne~~~f~~~~~~~~--~~~~~~~~~~ 72 (135)
T cd04017 1 FQLRAYIYQARDLLAADKSGLSDPFARVSFLNQ---SQETEVIKET---LSPTWDQTLIFDEVELYGS--PEEIAQNPPL 72 (135)
T ss_pred CEEEEEEEEeecCcCCCCCCCCCCEEEEEECCe---eeEeeeEcCC---CCCccCcEEEEeeeeccCC--hHHhhcCCCE
Confidence 468999999999985 25779999998653 4567777776 3567888866653 33211 1112222 45
Q ss_pred EEEEEeeccc
Q psy7271 233 QIYQVWCSPL 242 (305)
Q Consensus 233 L~fEVwG~~~ 242 (305)
|.|+||-+..
T Consensus 73 l~v~V~d~d~ 82 (135)
T cd04017 73 VVVELFDQDS 82 (135)
T ss_pred EEEEEEeCcC
Confidence 8999998754
No 20
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=95.12 E-value=0.14 Score=41.76 Aligned_cols=71 Identities=14% Similarity=0.165 Sum_probs=50.0
Q ss_pred EEEEEEeeccCCCcc----cCceEEEEEeCCCCccceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcEEE
Q psy7271 160 QFRITVLQAVGISTE----YSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQIY 235 (305)
Q Consensus 160 ~FrVtIlqAsGLp~~----ysdVFCQy~F~~~~ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L~f 235 (305)
.|.|+|.+|.+|+.. .+|.||+....+.......|+.++++ ..+.|+.. |.+.++.. ....|.|
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t---~~P~Wne~--f~f~i~~~-------~~~~L~i 69 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDT---LNPRWDEE--FELEVPAG-------EPLWISA 69 (126)
T ss_pred EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCC---CCCcccce--EEEEcCCC-------CCCEEEE
Confidence 578999999999853 46799999765443345677777766 24568766 55556654 2457999
Q ss_pred EEeeccc
Q psy7271 236 QVWCSPL 242 (305)
Q Consensus 236 EVwG~~~ 242 (305)
+||-+..
T Consensus 70 ~v~d~d~ 76 (126)
T cd04043 70 TVWDRSF 76 (126)
T ss_pred EEEECCC
Confidence 9998754
No 21
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=95.03 E-value=0.15 Score=40.96 Aligned_cols=70 Identities=11% Similarity=0.100 Sum_probs=48.1
Q ss_pred EEEEEEeeccCCCcc----cCceEEEEEeCCCCccceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcEEE
Q psy7271 160 QFRITVLQAVGISTE----YSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQIY 235 (305)
Q Consensus 160 ~FrVtIlqAsGLp~~----ysdVFCQy~F~~~~ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L~f 235 (305)
+.+|+|.+|.+|+.. -+|-||+..+.+ ....|+.+++.+ ..+.|+..=.| .|... .+..|.|
T Consensus 2 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~---~~~kT~~~~~~~--~nP~Wne~f~f--~v~~~-------~~~~l~i 67 (118)
T cd08681 2 TLVVVVLKARNLPNKRKLDKQDPYCVLRIGG---VTKKTKTDFRGG--QHPEWDEELRF--EITED-------KKPILKV 67 (118)
T ss_pred EEEEEEEEccCCCCCCcCCCCCceEEEEECC---CccccccccCCC--CCCccCceEEE--EecCC-------CCCEEEE
Confidence 468999999999853 457999998865 234567665432 34578877444 45543 3457999
Q ss_pred EEeecccc
Q psy7271 236 QVWCSPLA 243 (305)
Q Consensus 236 EVwG~~~~ 243 (305)
+||-++..
T Consensus 68 ~v~d~~~~ 75 (118)
T cd08681 68 AVFDDDKR 75 (118)
T ss_pred EEEeCCCC
Confidence 99997653
No 22
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=94.95 E-value=0.11 Score=43.10 Aligned_cols=73 Identities=14% Similarity=0.109 Sum_probs=50.5
Q ss_pred EEEEEEeeccCCCc----ccCceEEEEEeCCCC--ccceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcE
Q psy7271 160 QFRITVLQAVGIST----EYSDIFCQFNFLHRH--DEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQ 233 (305)
Q Consensus 160 ~FrVtIlqAsGLp~----~ysdVFCQy~F~~~~--ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L 233 (305)
+++|+|++|.+|+. ..+|-||+..+.... .....|+.++++ ..+.|+++ |.+.+..+ - ++...|
T Consensus 16 ~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t---~nP~wne~--f~f~i~~~--~---l~~~~l 85 (136)
T cd08402 16 KLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRT---LNPYYNES--FSFEVPFE--Q---IQKVHL 85 (136)
T ss_pred eEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCC---CCCcccce--EEEECCHH--H---hCCCEE
Confidence 48899999999985 357899999886422 234556666665 35678876 44455544 2 356689
Q ss_pred EEEEeeccc
Q psy7271 234 IYQVWCSPL 242 (305)
Q Consensus 234 ~fEVwG~~~ 242 (305)
.|+||.+..
T Consensus 86 ~~~v~d~~~ 94 (136)
T cd08402 86 IVTVLDYDR 94 (136)
T ss_pred EEEEEeCCC
Confidence 999999864
No 23
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=94.79 E-value=0.15 Score=42.41 Aligned_cols=75 Identities=20% Similarity=0.157 Sum_probs=51.6
Q ss_pred EEEEEEeeccCCCc----ccCceEEEEEeCCCC----ccceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCC
Q psy7271 160 QFRITVLQAVGIST----EYSDIFCQFNFLHRH----DEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQST 231 (305)
Q Consensus 160 ~FrVtIlqAsGLp~----~ysdVFCQy~F~~~~----ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~ 231 (305)
.++|+|.+|.+|+. ..+|.||+..+.... .....|+.++++ ..+.|+..- .+.++.. - .-+...
T Consensus 17 ~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t---~nP~wnE~f--~f~i~~~--~-~~~~~~ 88 (133)
T cd04009 17 SLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKT---LFPLFDESF--EFNVPPE--Q-CSVEGA 88 (133)
T ss_pred EEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCC---CCCccCCEE--EEEechh--h-cccCCC
Confidence 47899999999986 357899999987543 235678887777 345687664 4445442 1 113456
Q ss_pred cEEEEEeeccc
Q psy7271 232 SQIYQVWCSPL 242 (305)
Q Consensus 232 ~L~fEVwG~~~ 242 (305)
.|.|+||.+..
T Consensus 89 ~l~~~V~d~d~ 99 (133)
T cd04009 89 LLLFTVKDYDL 99 (133)
T ss_pred EEEEEEEecCC
Confidence 79999998754
No 24
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=94.78 E-value=0.12 Score=43.84 Aligned_cols=99 Identities=17% Similarity=0.150 Sum_probs=63.3
Q ss_pred EEEEEEeeccCCCcc----cCceEEEEEeCCCCcc--ceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcE
Q psy7271 160 QFRITVLQAVGISTE----YSDIFCQFNFLHRHDE--AFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQ 233 (305)
Q Consensus 160 ~FrVtIlqAsGLp~~----ysdVFCQy~F~~~~ee--~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L 233 (305)
...|+|++|.+|+.. .+|-||+..++..... ...|...+++ .++.|+++-.| .|+++ . |++..|
T Consensus 16 ~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t---~nP~~nE~f~F--~v~~~--~---l~~~~l 85 (136)
T cd08406 16 RLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDD---TNPIFNEAMIF--SVPAI--V---LQDLSL 85 (136)
T ss_pred EEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCC---CCCeeceeEEE--ECCHH--H---hCCcEE
Confidence 468999999999963 5789999999865432 2345555555 35679888555 46665 2 688899
Q ss_pred EEEEeecccccc---ccc-cccccccccccccccccccC
Q psy7271 234 IYQVWCSPLALY---ITS-VCQPLMVNMSRLWWSTVMNS 268 (305)
Q Consensus 234 ~fEVwG~~~~~~---~~~-~~~~~~~~~~r~~~~~~~~~ 268 (305)
.|+||.+..-+- +=+ ++.+.....-+++|-..|+.
T Consensus 86 ~~~V~~~d~~~~~~~iG~v~lg~~~~g~~~~hW~~ml~~ 124 (136)
T cd08406 86 RVTVAESTEDGKTPNVGHVIIGPAASGMGLSHWNQMLAS 124 (136)
T ss_pred EEEEEeCCCCCCCCeeEEEEECCCCCChhHHHHHHHHHC
Confidence 999999865211 111 22222233446677666653
No 25
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=94.74 E-value=0.17 Score=42.68 Aligned_cols=68 Identities=10% Similarity=0.170 Sum_probs=49.5
Q ss_pred EEEEEEeeccCCCcc----cCceEEEEEeCCCCccceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcEEE
Q psy7271 160 QFRITVLQAVGISTE----YSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQIY 235 (305)
Q Consensus 160 ~FrVtIlqAsGLp~~----ysdVFCQy~F~~~~ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L~f 235 (305)
..+|+|++|.+|+.. .+|-||+..+-+ ..+.|+.++++ ..+.|+.+-.| .+++. ....|.|
T Consensus 16 ~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~---~~~kT~vi~~t---~nP~Wne~f~f--~v~~~-------~~~~l~i 80 (136)
T cd08375 16 RLMVVIVEGRDLKPCNSNGKSDPYCEVSMGS---QEHKTKVVSDT---LNPKWNSSMQF--FVKDL-------EQDVLCI 80 (136)
T ss_pred EEEEEEEEeeCCCCCCCCCCcCcEEEEEECC---EeeeccccCCC---CCCccCceEEE--EecCc-------cCCEEEE
Confidence 488999999999853 567999998743 35778888776 35678887444 45442 3567999
Q ss_pred EEeeccc
Q psy7271 236 QVWCSPL 242 (305)
Q Consensus 236 EVwG~~~ 242 (305)
+||-+..
T Consensus 81 ~V~D~d~ 87 (136)
T cd08375 81 TVFDRDF 87 (136)
T ss_pred EEEECCC
Confidence 9998753
No 26
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=94.68 E-value=0.11 Score=43.69 Aligned_cols=100 Identities=13% Similarity=0.185 Sum_probs=64.0
Q ss_pred EEEEEEeeccCCCcc---cCceEEEEEeCCCCc--cceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcEE
Q psy7271 160 QFRITVLQAVGISTE---YSDIFCQFNFLHRHD--EAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQI 234 (305)
Q Consensus 160 ~FrVtIlqAsGLp~~---ysdVFCQy~F~~~~e--e~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L~ 234 (305)
+..|+|++|.+|+.. .+|.|++-.+..... ....|...+++ .++.|+.. |...|+++ . |.+..|.
T Consensus 16 ~L~V~V~~a~nL~~~~~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~---~nP~fnE~--F~f~i~~~--~---l~~~~L~ 85 (137)
T cd08409 16 RLTVVVLRARGLRQLDHAHTSVYVKVSLMIHNKVVKTKKTEVVDGA---ASPSFNES--FSFKVTSR--Q---LDTASLS 85 (137)
T ss_pred eEEEEEEEecCCCcccCCCCCeEEEEEEEECCEEeeeeecccEeCC---CCCcccce--EEEECCHH--H---hCccEEE
Confidence 478999999999854 468999999886432 23456665555 35678877 55567766 3 5778899
Q ss_pred EEEeecccc---cccccccccc---ccccccccccccccCc
Q psy7271 235 YQVWCSPLA---LYITSVCQPL---MVNMSRLWWSTVMNSR 269 (305)
Q Consensus 235 fEVwG~~~~---~~~~~~~~~~---~~~~~r~~~~~~~~~~ 269 (305)
|+||.+..- ..+-++.-.+ -.-..+.+|-+.|..|
T Consensus 86 ~~V~~~~~~~~~~~lG~v~ig~~~~~~~~~~~hW~~~~~~p 126 (137)
T cd08409 86 LSVMQSGGVRKSKLLGRVVLGPFMYARGKELEHWNDMLSKP 126 (137)
T ss_pred EEEEeCCCCCCcceEEEEEECCcccCCChHHHHHHHHHhCC
Confidence 999987641 1111221111 1124467787777753
No 27
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=94.67 E-value=0.15 Score=42.33 Aligned_cols=71 Identities=14% Similarity=0.171 Sum_probs=50.5
Q ss_pred EEEEEeeccCCCcc-----cCceEEEEEeCCCCc--cceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcE
Q psy7271 161 FRITVLQAVGISTE-----YSDIFCQFNFLHRHD--EAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQ 233 (305)
Q Consensus 161 FrVtIlqAsGLp~~-----ysdVFCQy~F~~~~e--e~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L 233 (305)
..|+|++|.+|++. .+|.|++..+..... ....|+..+++ ..+.|+.+ |.+.|+.+ . |.+..|
T Consensus 17 L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t---~nP~wnE~--f~f~i~~~--~---l~~~~L 86 (125)
T cd04029 17 LNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNT---TNPVYNET--LKYSISHS--Q---LETRTL 86 (125)
T ss_pred EEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCC---CCCcccce--EEEECCHH--H---hCCCEE
Confidence 67899999999853 467999998875442 23456666665 35668776 55556665 3 477789
Q ss_pred EEEEeecc
Q psy7271 234 IYQVWCSP 241 (305)
Q Consensus 234 ~fEVwG~~ 241 (305)
.|+||.+.
T Consensus 87 ~~~V~d~~ 94 (125)
T cd04029 87 QLSVWHYD 94 (125)
T ss_pred EEEEEECC
Confidence 99999764
No 28
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=94.55 E-value=0.21 Score=41.25 Aligned_cols=69 Identities=14% Similarity=0.085 Sum_probs=46.9
Q ss_pred EEEEEeeccCCCc----ccCceEEEEEeCCCCccceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcEEEE
Q psy7271 161 FRITVLQAVGIST----EYSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQIYQ 236 (305)
Q Consensus 161 FrVtIlqAsGLp~----~ysdVFCQy~F~~~~ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L~fE 236 (305)
.||+|.+|.+|+. ..+|-||+..+.+... ...|+.++++ ..+.|+.. |.+.+... ++..|.|+
T Consensus 2 lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~-~~kT~~v~~t---~nP~Wne~--f~f~~~~~-------~~~~L~~~ 68 (124)
T cd04037 2 VRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKI-NDRDNYIPNT---LNPVFGKM--FELEATLP-------GNSILKIS 68 (124)
T ss_pred EEEEEEECcCCCCCCCCCCCCcEEEEEECCeec-cceeeEEECC---CCCccceE--EEEEecCC-------CCCEEEEE
Confidence 5899999999985 3567999999865442 3445556665 34568765 44444222 34679999
Q ss_pred Eeeccc
Q psy7271 237 VWCSPL 242 (305)
Q Consensus 237 VwG~~~ 242 (305)
||.+..
T Consensus 69 V~d~d~ 74 (124)
T cd04037 69 VMDYDL 74 (124)
T ss_pred EEECCC
Confidence 999854
No 29
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=94.55 E-value=0.3 Score=39.10 Aligned_cols=67 Identities=15% Similarity=0.220 Sum_probs=47.6
Q ss_pred EEEEEeeccCCCcc----cCceEEEEEeCCCCccceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcEEEE
Q psy7271 161 FRITVLQAVGISTE----YSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQIYQ 236 (305)
Q Consensus 161 FrVtIlqAsGLp~~----ysdVFCQy~F~~~~ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L~fE 236 (305)
++|+|.+|.+|+.. .+|-||..++-+ ....|+.++++ ..+.|+.+ |.+.+.+. ++..|.|+
T Consensus 2 ~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~---~~~kT~v~~~t---~nP~Wne~--f~f~~~~~-------~~~~l~v~ 66 (116)
T cd08376 2 VTIVLVEGKNLPPMDDNGLSDPYVKFRLGN---EKYKSKVCSKT---LNPQWLEQ--FDLHLFDD-------QSQILEIE 66 (116)
T ss_pred EEEEEEEEECCCCCCCCCCCCcEEEEEECC---EeEecccccCC---CCCceeEE--EEEEecCC-------CCCEEEEE
Confidence 57999999999964 567999999843 23567766665 34568876 44445443 35679999
Q ss_pred Eeeccc
Q psy7271 237 VWCSPL 242 (305)
Q Consensus 237 VwG~~~ 242 (305)
||-+..
T Consensus 67 v~d~~~ 72 (116)
T cd08376 67 VWDKDT 72 (116)
T ss_pred EEECCC
Confidence 998754
No 30
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=94.49 E-value=0.16 Score=43.14 Aligned_cols=73 Identities=10% Similarity=0.184 Sum_probs=52.4
Q ss_pred EEEEEEeeccCCCcc----cCceEEEEEeCCCCc---cceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCc
Q psy7271 160 QFRITVLQAVGISTE----YSDIFCQFNFLHRHD---EAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTS 232 (305)
Q Consensus 160 ~FrVtIlqAsGLp~~----ysdVFCQy~F~~~~e---e~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~ 232 (305)
++.|+|++|.+|+.. .+|.|++..++.... ....|...+++ ..+.|+.+ |...|+++ - +++..
T Consensus 16 ~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t---~nPvfnEt--F~f~i~~~--~---l~~~~ 85 (138)
T cd08408 16 RLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQ---PDPEFKET--FVFQVALF--Q---LSEVT 85 (138)
T ss_pred eEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCC---CCCcEeee--EEEECCHH--H---hCccE
Confidence 468999999999963 468999999986432 12356655555 35678887 44456665 3 68889
Q ss_pred EEEEEeeccc
Q psy7271 233 QIYQVWCSPL 242 (305)
Q Consensus 233 L~fEVwG~~~ 242 (305)
|.|.||.+..
T Consensus 86 L~~~V~~~~~ 95 (138)
T cd08408 86 LMFSVYNKRK 95 (138)
T ss_pred EEEEEEECCC
Confidence 9999999864
No 31
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=94.41 E-value=0.17 Score=43.32 Aligned_cols=98 Identities=10% Similarity=0.129 Sum_probs=63.5
Q ss_pred EEEEEeeccCCCccc------CceEEEEEeCCCCcc--ceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCc
Q psy7271 161 FRITVLQAVGISTEY------SDIFCQFNFLHRHDE--AFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTS 232 (305)
Q Consensus 161 FrVtIlqAsGLp~~y------sdVFCQy~F~~~~ee--~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~ 232 (305)
..|+|++|.+|++.- +|.||+-.++.+... ...|...+++ .++.|+.+-.| .|+.+ . |.+..
T Consensus 17 L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t---~nPvfNE~f~F--~v~~~--~---L~~~~ 86 (138)
T cd08407 17 LLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHK---INPVWNEMIMF--ELPSE--L---LAASS 86 (138)
T ss_pred EEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCC---CCCccccEEEE--ECCHH--H---hCccE
Confidence 679999999998642 689999999876442 3346655555 35679888555 56665 3 68888
Q ss_pred EEEEEeeccccc---cccc-cccccccccccccccccccC
Q psy7271 233 QIYQVWCSPLAL---YITS-VCQPLMVNMSRLWWSTVMNS 268 (305)
Q Consensus 233 L~fEVwG~~~~~---~~~~-~~~~~~~~~~r~~~~~~~~~ 268 (305)
|.|+||-+..-+ .+-+ ++..-....-+++|-..|..
T Consensus 87 L~~~V~d~d~~~~~d~iG~v~lg~~~~g~~~~hW~~ml~~ 126 (138)
T cd08407 87 VELEVLNQDSPGQSLPLGRCSLGLHTSGTERQHWEEMLDN 126 (138)
T ss_pred EEEEEEeCCCCcCcceeceEEecCcCCCcHHHHHHHHHhC
Confidence 999999986521 1111 11111134456778776664
No 32
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=94.40 E-value=0.16 Score=41.90 Aligned_cols=73 Identities=15% Similarity=0.207 Sum_probs=51.7
Q ss_pred EEEEEEeeccCCCcc----cCceEEEEEeCCCCc--cceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcE
Q psy7271 160 QFRITVLQAVGISTE----YSDIFCQFNFLHRHD--EAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQ 233 (305)
Q Consensus 160 ~FrVtIlqAsGLp~~----ysdVFCQy~F~~~~e--e~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L 233 (305)
+..|+|.+|.||+.. .+|-||+..+..... ....|+.++++ ..+.|+.+ |.+.++.+ - +....|
T Consensus 14 ~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t---~nP~wne~--f~f~~~~~--~---l~~~~l 83 (133)
T cd08384 14 GLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKT---LNPEFNEE--FFYDIKHS--D---LAKKTL 83 (133)
T ss_pred EEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEecc---CCCCcccE--EEEECCHH--H---hCCCEE
Confidence 468999999999852 678999999875432 23456666665 34568777 55566655 2 456789
Q ss_pred EEEEeeccc
Q psy7271 234 IYQVWCSPL 242 (305)
Q Consensus 234 ~fEVwG~~~ 242 (305)
.|+||-+..
T Consensus 84 ~~~V~d~d~ 92 (133)
T cd08384 84 EITVWDKDI 92 (133)
T ss_pred EEEEEeCCC
Confidence 999998754
No 33
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=94.38 E-value=0.25 Score=39.56 Aligned_cols=67 Identities=12% Similarity=0.186 Sum_probs=48.7
Q ss_pred EEEEEeeccCCCcc----------cCceEEEEEeCCCCccceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccC
Q psy7271 161 FRITVLQAVGISTE----------YSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQS 230 (305)
Q Consensus 161 FrVtIlqAsGLp~~----------ysdVFCQy~F~~~~ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~ 230 (305)
.+|+|.+|.+|+.. .+|-||...+.+ ..+.|+.++++ ..+.|+.. |.+.+++. ..
T Consensus 3 l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~---~~~kT~~~~~t---~~P~W~e~--f~~~v~~~-------~~ 67 (121)
T cd08391 3 LRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGA---QTFKSKVIKEN---LNPKWNEV--YEAVVDEV-------PG 67 (121)
T ss_pred EEEEEEEccCCcccccccccCCCCCcCCEEEEEECC---EeEEccccCCC---CCCcccce--EEEEeCCC-------CC
Confidence 67999999999853 467999999865 45778777776 34568876 55555543 35
Q ss_pred CcEEEEEeeccc
Q psy7271 231 TSQIYQVWCSPL 242 (305)
Q Consensus 231 ~~L~fEVwG~~~ 242 (305)
..|.|+||-+..
T Consensus 68 ~~l~i~v~d~~~ 79 (121)
T cd08391 68 QELEIELFDEDP 79 (121)
T ss_pred CEEEEEEEecCC
Confidence 679999998754
No 34
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=94.37 E-value=0.19 Score=42.04 Aligned_cols=73 Identities=18% Similarity=0.148 Sum_probs=52.6
Q ss_pred EEEEEEeeccCCCc-----ccCceEEEEEeCCCCcc--ceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCc
Q psy7271 160 QFRITVLQAVGIST-----EYSDIFCQFNFLHRHDE--AFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTS 232 (305)
Q Consensus 160 ~FrVtIlqAsGLp~-----~ysdVFCQy~F~~~~ee--~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~ 232 (305)
...|+|++|.+|++ ..+|.||+..++..... ..-|..++++ ..+.|+.+ |...|+.+ . |.+..
T Consensus 16 ~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t---~nPvfNE~--F~f~v~~~--~---l~~~~ 85 (128)
T cd08392 16 CLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGT---VNPVFNET--LKYVVEAD--L---LSSRQ 85 (128)
T ss_pred EEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCC---CCCccceE--EEEEcCHH--H---hCCcE
Confidence 56789999999985 35689999999865432 3457776665 35678877 44456665 3 57788
Q ss_pred EEEEEeeccc
Q psy7271 233 QIYQVWCSPL 242 (305)
Q Consensus 233 L~fEVwG~~~ 242 (305)
|.|.||.+..
T Consensus 86 L~v~V~~~~~ 95 (128)
T cd08392 86 LQVSVWHSRT 95 (128)
T ss_pred EEEEEEeCCC
Confidence 9999998753
No 35
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=94.30 E-value=0.18 Score=40.50 Aligned_cols=68 Identities=15% Similarity=0.171 Sum_probs=49.7
Q ss_pred EEEEeeccCCCcc-----cCceEEEEEeCCCCccceeeCcccCCCCCCCeee-eEEEEEEEeecCCccccccccCCcEEE
Q psy7271 162 RITVLQAVGISTE-----YSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGF-YHIQNLTSATAAHAAPLHPHQSTSQIY 235 (305)
Q Consensus 162 rVtIlqAsGLp~~-----ysdVFCQy~F~~~~ee~fsTePvknt~~~~~~~F-~hvq~~~V~VTee~~fl~yl~~~~L~f 235 (305)
+|+|.+|.+||.. .+|-||...+.. ....|+.++++ ..+.| +.. |.+.+... . +++..|.|
T Consensus 2 ~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~---~~~kT~v~~~~---~nP~W~ne~--f~f~i~~~--~---l~~~~l~i 68 (110)
T cd08688 2 KVRVVAARDLPVMDRSSDLTDAFVEVKFGS---TTYKTDVVKKS---LNPVWNSEW--FRFEVDDE--E---LQDEPLQI 68 (110)
T ss_pred EEEEEEEECCCccccCCCCCCceEEEEECC---eeEecceecCC---CCCcccCcE--EEEEcChH--H---cCCCeEEE
Confidence 6999999999842 467999999865 35667777665 35568 654 56667665 2 46778999
Q ss_pred EEeeccc
Q psy7271 236 QVWCSPL 242 (305)
Q Consensus 236 EVwG~~~ 242 (305)
+||-+..
T Consensus 69 ~V~d~d~ 75 (110)
T cd08688 69 RVMDHDT 75 (110)
T ss_pred EEEeCCC
Confidence 9999864
No 36
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=94.16 E-value=0.27 Score=41.43 Aligned_cols=70 Identities=19% Similarity=0.256 Sum_probs=49.9
Q ss_pred EEEEEEeeccCCCcc---cCceEEEEEeCCCCccceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcEEEE
Q psy7271 160 QFRITVLQAVGISTE---YSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQIYQ 236 (305)
Q Consensus 160 ~FrVtIlqAsGLp~~---ysdVFCQy~F~~~~ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L~fE 236 (305)
+++|+|.+|.||+.. -+|-||+..+-+. ...|+.++++. .+.|+.+-.|. . .. + .....|.||
T Consensus 29 ~L~V~V~~A~~L~~d~~g~~DPYVkV~~~~~---~~kT~vi~~t~---nPvWNE~F~f~--~-~~---~--~~~~~L~v~ 94 (127)
T cd04032 29 TLTVTVLRATGLWGDYFTSTDGYVKVFFGGQ---EKRTEVIWNNN---NPRWNATFDFG--S-VE---L--SPGGKLRFE 94 (127)
T ss_pred EEEEEEEECCCCCcCcCCCCCeEEEEEECCc---cccCceecCCC---CCcCCCEEEEe--c-cc---C--CCCCEEEEE
Confidence 789999999999854 3468999988543 56788888773 45787774443 1 11 1 256689999
Q ss_pred Eeecccc
Q psy7271 237 VWCSPLA 243 (305)
Q Consensus 237 VwG~~~~ 243 (305)
||-+...
T Consensus 95 V~D~d~~ 101 (127)
T cd04032 95 VWDRDNG 101 (127)
T ss_pred EEeCCCC
Confidence 9998653
No 37
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=94.16 E-value=0.3 Score=39.65 Aligned_cols=68 Identities=15% Similarity=0.135 Sum_probs=47.9
Q ss_pred EEEEEeeccCCCcc-------c-CceEEEEEeCCCCccceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCc
Q psy7271 161 FRITVLQAVGISTE-------Y-SDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTS 232 (305)
Q Consensus 161 FrVtIlqAsGLp~~-------y-sdVFCQy~F~~~~ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~ 232 (305)
..|+|.+|.+|++. + +|-||.+.+-. ..+.|+.++++ .++.|+-. |.+.+... . .+..
T Consensus 3 l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~---~~~kT~v~~~t---~nPvWne~--f~f~v~~~--~----~~~~ 68 (108)
T cd04039 3 VFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGR---RVFRTSWRRHT---LNPVFNER--LAFEVYPH--E----KNFD 68 (108)
T ss_pred EEEEEEeeeCCCCccccCCCCCccCceEEEEECC---EeEeeeeecCC---CCCcccce--EEEEEeCc--c----CCCE
Confidence 57999999999963 2 57899998832 24678888776 35568765 44455443 1 3457
Q ss_pred EEEEEeeccc
Q psy7271 233 QIYQVWCSPL 242 (305)
Q Consensus 233 L~fEVwG~~~ 242 (305)
|.|+||-+..
T Consensus 69 L~~~V~D~d~ 78 (108)
T cd04039 69 IQFKVLDKDK 78 (108)
T ss_pred EEEEEEECCC
Confidence 9999999865
No 38
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=94.07 E-value=0.22 Score=40.28 Aligned_cols=73 Identities=18% Similarity=0.214 Sum_probs=51.0
Q ss_pred EEEEEEeeccCCCcc----cCceEEEEEeCCCCc--cceeeCcccCCCCCCCeeeeEEEEEEEee-cCCccccccccCCc
Q psy7271 160 QFRITVLQAVGISTE----YSDIFCQFNFLHRHD--EAFSTEPVKNTGKGTPLGFYHIQNLTSAT-AAHAAPLHPHQSTS 232 (305)
Q Consensus 160 ~FrVtIlqAsGLp~~----ysdVFCQy~F~~~~e--e~fsTePvknt~~~~~~~F~hvq~~~V~V-Tee~~fl~yl~~~~ 232 (305)
..+|+|.+|.+|+.. .+|.||+..+..... ....|+.++++ ..+.|+.+ |.+.+ ..+ - +.+..
T Consensus 17 ~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t---~nP~wne~--f~f~~~~~~--~---l~~~~ 86 (125)
T cd04031 17 QLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKT---LNPEWNQT--FEYSNVRRE--T---LKERT 86 (125)
T ss_pred EEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCC---CCCccccE--EEEcccCHH--H---hCCCE
Confidence 478999999999863 467999999876432 34567777776 35678765 55443 322 1 35678
Q ss_pred EEEEEeeccc
Q psy7271 233 QIYQVWCSPL 242 (305)
Q Consensus 233 L~fEVwG~~~ 242 (305)
|.|+||-+..
T Consensus 87 l~~~V~d~~~ 96 (125)
T cd04031 87 LEVTVWDYDR 96 (125)
T ss_pred EEEEEEeCCC
Confidence 9999999864
No 39
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=93.96 E-value=0.21 Score=40.67 Aligned_cols=75 Identities=17% Similarity=0.194 Sum_probs=51.9
Q ss_pred eEEEEEEeeccCCCc----ccCceEEEEEeCCCCc--cceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCc
Q psy7271 159 LQFRITVLQAVGIST----EYSDIFCQFNFLHRHD--EAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTS 232 (305)
Q Consensus 159 ~~FrVtIlqAsGLp~----~ysdVFCQy~F~~~~e--e~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~ 232 (305)
-+++|+|.+|.+|+. ..+|.||+..+..... ....|+.++++ ..+.|+++-.|. .++.+ -+++..
T Consensus 15 ~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~---~~P~Wne~f~f~-~~~~~-----~~~~~~ 85 (123)
T cd04035 15 SALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKT---RNPEFNETLTYY-GITEE-----DIQRKT 85 (123)
T ss_pred CEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCC---CCCCccceEEEc-CCCHH-----HhCCCE
Confidence 457999999999985 3567999998865332 24567777665 356788875442 23332 256678
Q ss_pred EEEEEeeccc
Q psy7271 233 QIYQVWCSPL 242 (305)
Q Consensus 233 L~fEVwG~~~ 242 (305)
|.|+||-+..
T Consensus 86 l~~~v~d~~~ 95 (123)
T cd04035 86 LRLLVLDEDR 95 (123)
T ss_pred EEEEEEEcCC
Confidence 9999998754
No 40
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=93.93 E-value=0.23 Score=41.17 Aligned_cols=73 Identities=15% Similarity=0.171 Sum_probs=49.5
Q ss_pred EEEEEEeeccCCCc----ccCceEEEEEeCCCCc--cceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcE
Q psy7271 160 QFRITVLQAVGIST----EYSDIFCQFNFLHRHD--EAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQ 233 (305)
Q Consensus 160 ~FrVtIlqAsGLp~----~ysdVFCQy~F~~~~e--e~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L 233 (305)
..+|+|.+|.+|+. ..+|.||+..+..... ....|+-.+++ ..+.|+..-.| .++.+ - +++..|
T Consensus 15 ~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t---~nP~wne~f~f--~i~~~--~---~~~~~l 84 (134)
T cd08403 15 RLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNT---LNPTYNEALVF--DVPPE--N---VDNVSL 84 (134)
T ss_pred EEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCC---CCCcccceEEE--ECCHH--H---hCCCEE
Confidence 37899999999995 3678999999865322 23455544444 34568766444 45544 2 456779
Q ss_pred EEEEeeccc
Q psy7271 234 IYQVWCSPL 242 (305)
Q Consensus 234 ~fEVwG~~~ 242 (305)
.|+||.+..
T Consensus 85 ~~~v~d~~~ 93 (134)
T cd08403 85 IIAVVDYDR 93 (134)
T ss_pred EEEEEECCC
Confidence 999999864
No 41
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=93.89 E-value=0.26 Score=40.00 Aligned_cols=74 Identities=15% Similarity=0.134 Sum_probs=50.9
Q ss_pred EEEEEEeeccCCCcc----cCceEEEEEeCCCCccceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcEEE
Q psy7271 160 QFRITVLQAVGISTE----YSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQIY 235 (305)
Q Consensus 160 ~FrVtIlqAsGLp~~----ysdVFCQy~F~~~~ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L~f 235 (305)
+.+|+|.+|.+|+.. .+|-||+..+.........|+-++++ ..+.|+.+-.|.+ +.. +-+.+..|.|
T Consensus 17 ~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t---~~P~Wne~f~f~~-~~~-----~~l~~~~l~~ 87 (125)
T cd08386 17 TLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKN---LNPHWNETFLFEG-FPY-----EKLQQRVLYL 87 (125)
T ss_pred EEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCC---CCCccceeEEEcc-cCH-----HHhCCCEEEE
Confidence 577999999999853 46799999986544445677777766 3456876644431 222 2246678999
Q ss_pred EEeeccc
Q psy7271 236 QVWCSPL 242 (305)
Q Consensus 236 EVwG~~~ 242 (305)
+||.+..
T Consensus 88 ~v~d~d~ 94 (125)
T cd08386 88 QVLDYDR 94 (125)
T ss_pred EEEeCCC
Confidence 9998753
No 42
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=93.85 E-value=0.29 Score=40.36 Aligned_cols=72 Identities=14% Similarity=0.229 Sum_probs=50.5
Q ss_pred EEEEEEeeccCCCcc---cCceEEEEEeCCCCcc--ceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcEE
Q psy7271 160 QFRITVLQAVGISTE---YSDIFCQFNFLHRHDE--AFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQI 234 (305)
Q Consensus 160 ~FrVtIlqAsGLp~~---ysdVFCQy~F~~~~ee--~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L~ 234 (305)
...|+|.+|.+|+.. .+|-||+-.+...... ...|..++++ ..+.|+.. |.+.++.+ . +++ .|.
T Consensus 13 ~L~V~Vi~ar~L~~~~~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t---~~P~~nE~--F~f~v~~~--~---~~~-~l~ 81 (119)
T cd08685 13 KLTLHVLEAKGLRSTNSGTCNSYVKISLSPDKEVRFRQKTSTVPDS---ANPLFHET--FSFDVNER--D---YQK-RLL 81 (119)
T ss_pred EEEEEEEEEECCCCCCCCCCCeeEEEEEEeCCCCcceEeCccccCC---CCCccccE--EEEEcChH--H---hCC-EEE
Confidence 468999999999863 5689999999865443 3357777666 34568766 55566665 3 233 588
Q ss_pred EEEeeccc
Q psy7271 235 YQVWCSPL 242 (305)
Q Consensus 235 fEVwG~~~ 242 (305)
|+||.+..
T Consensus 82 v~V~~~~~ 89 (119)
T cd08685 82 VTVWNKLS 89 (119)
T ss_pred EEEECCCC
Confidence 99999754
No 43
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=93.85 E-value=0.36 Score=39.62 Aligned_cols=66 Identities=23% Similarity=0.223 Sum_probs=47.5
Q ss_pred EEEEEeeccCCCcc----cCceEEEEEeCCCCccceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcEEEE
Q psy7271 161 FRITVLQAVGISTE----YSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQIYQ 236 (305)
Q Consensus 161 FrVtIlqAsGLp~~----ysdVFCQy~F~~~~ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L~fE 236 (305)
.+|+|.+|.+|+.. .+|.||...+-+ ...+.|+..+++ ..+.|+.+ |.+.++. +..|.|+
T Consensus 2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~--~~~~kT~v~~~t---~nP~Wne~--f~~~~~~---------~~~l~i~ 65 (123)
T cd08382 2 VRLTVLCADGLAKRDLFRLPDPFAVITVDG--GQTHSTDVAKKT---LDPKWNEH--FDLTVGP---------SSIITIQ 65 (123)
T ss_pred eEEEEEEecCCCccCCCCCCCcEEEEEECC--ccceEccEEcCC---CCCcccce--EEEEeCC---------CCEEEEE
Confidence 58999999999853 457999999854 335778877766 34568766 5555543 3479999
Q ss_pred Eeeccc
Q psy7271 237 VWCSPL 242 (305)
Q Consensus 237 VwG~~~ 242 (305)
||-+..
T Consensus 66 V~d~~~ 71 (123)
T cd08382 66 VFDQKK 71 (123)
T ss_pred EEECCC
Confidence 998755
No 44
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=93.85 E-value=0.25 Score=41.06 Aligned_cols=73 Identities=16% Similarity=0.109 Sum_probs=50.5
Q ss_pred EEEEEEeeccCCCcc----cCceEEEEEeCCCCcc--ceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcE
Q psy7271 160 QFRITVLQAVGISTE----YSDIFCQFNFLHRHDE--AFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQ 233 (305)
Q Consensus 160 ~FrVtIlqAsGLp~~----ysdVFCQy~F~~~~ee--~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L 233 (305)
++.|+|++|.+|+.. .+|-||+..+...... ...|+.++++ ..+.|+.+-.| .+..+ . +++..|
T Consensus 16 ~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t---~nP~w~e~F~f--~v~~~--~---~~~~~l 85 (136)
T cd08404 16 RLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCT---LNPVFNESFVF--DIPSE--E---LEDISV 85 (136)
T ss_pred eEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCC---CCCccCceEEE--ECCHH--H---hCCCEE
Confidence 478899999999853 5689999998754332 2346666665 34568777444 56544 2 366779
Q ss_pred EEEEeeccc
Q psy7271 234 IYQVWCSPL 242 (305)
Q Consensus 234 ~fEVwG~~~ 242 (305)
.|+||.+..
T Consensus 86 ~~~v~d~d~ 94 (136)
T cd08404 86 EFLVLDSDR 94 (136)
T ss_pred EEEEEECCC
Confidence 999999854
No 45
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=93.72 E-value=0.33 Score=38.74 Aligned_cols=68 Identities=16% Similarity=0.215 Sum_probs=47.5
Q ss_pred EEEEEeeccCCCcc----cCceEEEEEeCCCCccceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcEEEE
Q psy7271 161 FRITVLQAVGISTE----YSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQIYQ 236 (305)
Q Consensus 161 FrVtIlqAsGLp~~----ysdVFCQy~F~~~~ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L~fE 236 (305)
++|+|++|.+|+.. .+|-||.....+ .....|+.++++ ..+.|+.+-.| .+... ....|.|+
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~--~~~~~T~v~~~~---~~P~Wne~f~~--~~~~~-------~~~~l~~~ 66 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLNG--EKVFKTKTIKKT---LNPVWNESFEV--PVPSR-------VRAVLKVE 66 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEECC--CcceeeceecCC---CCCcccccEEE--EeccC-------CCCEEEEE
Confidence 37899999999863 457899998744 335788887765 35568876444 44432 34579999
Q ss_pred Eeeccc
Q psy7271 237 VWCSPL 242 (305)
Q Consensus 237 VwG~~~ 242 (305)
||-+..
T Consensus 67 v~d~~~ 72 (115)
T cd04040 67 VYDWDR 72 (115)
T ss_pred EEeCCC
Confidence 998854
No 46
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=93.67 E-value=0.32 Score=40.66 Aligned_cols=73 Identities=12% Similarity=0.216 Sum_probs=50.6
Q ss_pred EEEEEEeeccCCCcc----cCceEEEEEeCCCCc--cceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcE
Q psy7271 160 QFRITVLQAVGISTE----YSDIFCQFNFLHRHD--EAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQ 233 (305)
Q Consensus 160 ~FrVtIlqAsGLp~~----ysdVFCQy~F~~~~e--e~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L 233 (305)
+++|+|++|.+|+.. .+|-||+..+.+... ....|+.++++ ..+.|+.+-.| .++.+ - +++..|
T Consensus 15 ~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t---~nP~wnE~F~f--~i~~~--~---l~~~~l 84 (135)
T cd08410 15 RLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGT---IDPFYNESFSF--KVPQE--E---LENVSL 84 (135)
T ss_pred eEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCC---CCCccceeEEE--eCCHH--H---hCCCEE
Confidence 478999999999853 578999988754321 23556666666 34578887544 45544 2 356689
Q ss_pred EEEEeeccc
Q psy7271 234 IYQVWCSPL 242 (305)
Q Consensus 234 ~fEVwG~~~ 242 (305)
.|+||.+..
T Consensus 85 ~~~V~d~d~ 93 (135)
T cd08410 85 VFTVYGHNV 93 (135)
T ss_pred EEEEEeCCC
Confidence 999999754
No 47
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=93.62 E-value=0.46 Score=37.74 Aligned_cols=66 Identities=5% Similarity=-0.079 Sum_probs=47.1
Q ss_pred EEEEeeccCCCcc----cCceEEEEEeCCCCccceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcEEEEE
Q psy7271 162 RITVLQAVGISTE----YSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQIYQV 237 (305)
Q Consensus 162 rVtIlqAsGLp~~----ysdVFCQy~F~~~~ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L~fEV 237 (305)
.|+|.+|.+||.. -+|-||...+-+ ....|..++++ ..+.|+..-.| .|+.. +...|.|+|
T Consensus 3 ~V~v~~A~~L~~~~~~~~~dpyv~v~~~~---~~~kT~v~~~t---~nP~Wne~f~f--~v~~~-------~~~~l~v~v 67 (105)
T cd04050 3 FVYLDSAKNLPLAKSTKEPSPYVELTVGK---TTQKSKVKERT---NNPVWEEGFTF--LVRNP-------ENQELEIEV 67 (105)
T ss_pred EEEEeeecCCCCcccCCCCCcEEEEEECC---EEEeCccccCC---CCCcccceEEE--EeCCC-------CCCEEEEEE
Confidence 6899999999964 456999999976 35667666655 35678877444 45543 123699999
Q ss_pred eeccc
Q psy7271 238 WCSPL 242 (305)
Q Consensus 238 wG~~~ 242 (305)
|.+..
T Consensus 68 ~d~~~ 72 (105)
T cd04050 68 KDDKT 72 (105)
T ss_pred EECCC
Confidence 99865
No 48
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=93.61 E-value=0.29 Score=40.37 Aligned_cols=72 Identities=17% Similarity=0.181 Sum_probs=52.4
Q ss_pred EEEEEeeccCCCcc---cCceEEEEEeCCCCc--cceeeCcccCCCCCCCeeeeEEEEEEEee-cCCccccccccCCcEE
Q psy7271 161 FRITVLQAVGISTE---YSDIFCQFNFLHRHD--EAFSTEPVKNTGKGTPLGFYHIQNLTSAT-AAHAAPLHPHQSTSQI 234 (305)
Q Consensus 161 FrVtIlqAsGLp~~---ysdVFCQy~F~~~~e--e~fsTePvknt~~~~~~~F~hvq~~~V~V-Tee~~fl~yl~~~~L~ 234 (305)
.+|+|++|.+|+.. .+|-||+..+..... ....|..++++ .++.|+.+ |+..+ +.+ . +++..|.
T Consensus 15 L~V~Vi~A~~L~~~~~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~---~nP~wnE~--F~f~~~~~~--~---l~~~~L~ 84 (122)
T cd08381 15 LFVMVMHAKNLPLLDGSDPDPYVKTYLLPDPQKTTKRKTKVVRKT---RNPTFNEM--LVYDGLPVE--D---LQQRVLQ 84 (122)
T ss_pred EEEEEEEeeCCCCCCCCCCCCEEEEEEeeCCccCCceeCCccCCC---CCCCcccE--EEEecCChH--H---hCCCEEE
Confidence 67899999999963 678999999986543 24567777776 35678866 55555 433 2 5777899
Q ss_pred EEEeeccc
Q psy7271 235 YQVWCSPL 242 (305)
Q Consensus 235 fEVwG~~~ 242 (305)
|+||.+..
T Consensus 85 ~~V~d~d~ 92 (122)
T cd08381 85 VSVWSHDS 92 (122)
T ss_pred EEEEeCCC
Confidence 99998754
No 49
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=93.58 E-value=0.41 Score=39.42 Aligned_cols=67 Identities=15% Similarity=0.215 Sum_probs=48.9
Q ss_pred EEEEEeeccCCCcccCceEEEEEeCCCCccceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcEEEEEeec
Q psy7271 161 FRITVLQAVGISTEYSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQIYQVWCS 240 (305)
Q Consensus 161 FrVtIlqAsGLp~~ysdVFCQy~F~~~~ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L~fEVwG~ 240 (305)
..|+|++|.||+...+|.||...+.+ ....|+.++++ .++.|+.+-.| .+. .++...|.|+||.+
T Consensus 2 L~V~Vi~a~~L~~~~~Dpyv~v~l~~---~~~kT~v~~~t---~nP~Wne~F~f--~~~-------~~~~~~L~~~v~d~ 66 (121)
T cd08378 2 LYVRVVKARGLPANSNDPVVEVKLGN---YKGSTKAIERT---SNPEWNQVFAF--SKD-------RLQGSTLEVSVWDK 66 (121)
T ss_pred EEEEEEEecCCCcccCCCEEEEEECC---ccccccccCCC---CCCccceEEEE--EcC-------CCcCCEEEEEEEeC
Confidence 47999999999987778999999865 24567777666 34568776444 332 23667899999998
Q ss_pred cc
Q psy7271 241 PL 242 (305)
Q Consensus 241 ~~ 242 (305)
..
T Consensus 67 d~ 68 (121)
T cd08378 67 DK 68 (121)
T ss_pred CC
Confidence 64
No 50
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=93.35 E-value=0.38 Score=38.76 Aligned_cols=73 Identities=15% Similarity=0.186 Sum_probs=50.2
Q ss_pred EEEEEEeeccCCCcc-----cCceEEEEEeCCCCc--cceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCc
Q psy7271 160 QFRITVLQAVGISTE-----YSDIFCQFNFLHRHD--EAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTS 232 (305)
Q Consensus 160 ~FrVtIlqAsGLp~~-----ysdVFCQy~F~~~~e--e~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~ 232 (305)
...|+|.+|.+|+.. .+|.||+..+..... ....|+.++++ ..+.|+.+ |+..++++ . +....
T Consensus 15 ~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t---~~P~wne~--f~f~i~~~--~---l~~~~ 84 (123)
T cd08521 15 SLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNT---TNPVFNET--LKYHISKS--Q---LETRT 84 (123)
T ss_pred EEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCC---CCCcccce--EEEeCCHH--H---hCCCE
Confidence 467999999999842 457999998875433 23556666655 35568777 44456665 3 35678
Q ss_pred EEEEEeeccc
Q psy7271 233 QIYQVWCSPL 242 (305)
Q Consensus 233 L~fEVwG~~~ 242 (305)
|.|+||.+..
T Consensus 85 l~i~v~d~~~ 94 (123)
T cd08521 85 LQLSVWHHDR 94 (123)
T ss_pred EEEEEEeCCC
Confidence 9999998753
No 51
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=93.26 E-value=0.29 Score=42.64 Aligned_cols=73 Identities=16% Similarity=0.153 Sum_probs=50.6
Q ss_pred EEEEEeeccCCCcc----cCceEEEEEeCCCC--ccceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcEE
Q psy7271 161 FRITVLQAVGISTE----YSDIFCQFNFLHRH--DEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQI 234 (305)
Q Consensus 161 FrVtIlqAsGLp~~----ysdVFCQy~F~~~~--ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L~ 234 (305)
..|+|.+|.||+.. .+|-||+..+.... .....|+.++++ .++.|+..-.|.+ ++.+ - +.+..|.
T Consensus 29 L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t---~nP~WnE~f~f~~-~~~~--~---l~~~~L~ 99 (162)
T cd04020 29 LHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKS---VNPVWNHTFVYDG-VSPE--D---LSQACLE 99 (162)
T ss_pred EEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCC---CCCCCCCEEEEec-CCHH--H---hCCCEEE
Confidence 78999999999964 56899999886432 235678877776 3456887644432 2232 1 3566899
Q ss_pred EEEeeccc
Q psy7271 235 YQVWCSPL 242 (305)
Q Consensus 235 fEVwG~~~ 242 (305)
|+||-+..
T Consensus 100 i~V~d~d~ 107 (162)
T cd04020 100 LTVWDHDK 107 (162)
T ss_pred EEEEeCCC
Confidence 99998754
No 52
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=93.20 E-value=0.33 Score=40.33 Aligned_cols=73 Identities=15% Similarity=0.092 Sum_probs=50.4
Q ss_pred EEEEEEeeccCCCcc----cCceEEEEEeCCCC--ccceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcE
Q psy7271 160 QFRITVLQAVGISTE----YSDIFCQFNFLHRH--DEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQ 233 (305)
Q Consensus 160 ~FrVtIlqAsGLp~~----ysdVFCQy~F~~~~--ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L 233 (305)
++.|+|.+|.+|+.. .+|.||+....... .....|+.++++ ..+.|+.+-.|. ++.+ - +.+..|
T Consensus 16 ~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t---~~P~wne~F~f~--i~~~--~---~~~~~l 85 (136)
T cd08405 16 RITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRT---LNPVFNESFIFN--IPLE--R---LRETTL 85 (136)
T ss_pred eEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCC---CCCcccceEEEe--CCHH--H---hCCCEE
Confidence 478999999999852 46799999875432 234567777766 345788875554 4433 2 356789
Q ss_pred EEEEeeccc
Q psy7271 234 IYQVWCSPL 242 (305)
Q Consensus 234 ~fEVwG~~~ 242 (305)
.|+||-+..
T Consensus 86 ~~~v~d~~~ 94 (136)
T cd08405 86 IITVMDKDR 94 (136)
T ss_pred EEEEEECCC
Confidence 999998753
No 53
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=92.91 E-value=0.87 Score=36.54 Aligned_cols=69 Identities=16% Similarity=0.164 Sum_probs=48.7
Q ss_pred EEEEEEeeccCCCc-c----cCceEEEEEeCCCCccceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcEE
Q psy7271 160 QFRITVLQAVGIST-E----YSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQI 234 (305)
Q Consensus 160 ~FrVtIlqAsGLp~-~----ysdVFCQy~F~~~~ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L~ 234 (305)
..+|+|.+|.+|+. . .+|.||..++... .....|+.++++ ..+.|+..-.| .+. + .++.|.
T Consensus 3 ~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~-~~~~kT~~~~~~---~~P~Wne~~~~--~v~-~-------~~~~l~ 68 (124)
T cd04044 3 VLAVTIKSARGLKGSDIIGGTVDPYVTFSISNR-RELARTKVKKDT---SNPVWNETKYI--LVN-S-------LTEPLN 68 (124)
T ss_pred EEEEEEEcccCCCcccccCCCCCCeEEEEECCC-CcceEeeeecCC---CCCcceEEEEE--EeC-C-------CCCEEE
Confidence 36799999999994 2 2579999999764 345677777665 35678866444 444 2 245799
Q ss_pred EEEeeccc
Q psy7271 235 YQVWCSPL 242 (305)
Q Consensus 235 fEVwG~~~ 242 (305)
|+||-+..
T Consensus 69 ~~v~d~~~ 76 (124)
T cd04044 69 LTVYDFND 76 (124)
T ss_pred EEEEecCC
Confidence 99998754
No 54
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=92.87 E-value=0.5 Score=39.46 Aligned_cols=72 Identities=14% Similarity=0.089 Sum_probs=49.4
Q ss_pred EEEEEeeccCCCcc---cCceEEEEEeCC--CCc--cceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcE
Q psy7271 161 FRITVLQAVGISTE---YSDIFCQFNFLH--RHD--EAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQ 233 (305)
Q Consensus 161 FrVtIlqAsGLp~~---ysdVFCQy~F~~--~~e--e~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L 233 (305)
.+|+|++|.+|+.. .+|-||+..+.+ ..+ ..+.|.-.+|+ .++.|+..=.| .|+.+ +-++...|
T Consensus 2 L~V~Vi~A~~L~~~d~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~t---lnPvwNE~f~F--~v~~~----~~~~~~~L 72 (120)
T cd08395 2 VTVKVVAANDLKWQTTGMFRPFVEVNLIGPHLSDKKRKFATKSKNNN---WSPKYNETFQF--ILGNE----DDPESYEL 72 (120)
T ss_pred EEEEEEECcCCCcccCCCCCCEEEEEEecCCCcccccEeeeEEecCC---CCCccCcEEEE--EeeCc----CCCceeEE
Confidence 57999999999975 789999999975 222 23556555444 35678887444 45433 12577789
Q ss_pred EEEEeecc
Q psy7271 234 IYQVWCSP 241 (305)
Q Consensus 234 ~fEVwG~~ 241 (305)
.|.||=+.
T Consensus 73 ~~~V~D~d 80 (120)
T cd08395 73 HICVKDYC 80 (120)
T ss_pred EEEEEEec
Confidence 99998664
No 55
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=92.78 E-value=0.58 Score=37.86 Aligned_cols=67 Identities=16% Similarity=0.186 Sum_probs=46.4
Q ss_pred EEEEEeeccCCCcc------cCceEEEEEeCCCCccceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcEE
Q psy7271 161 FRITVLQAVGISTE------YSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQI 234 (305)
Q Consensus 161 FrVtIlqAsGLp~~------ysdVFCQy~F~~~~ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L~ 234 (305)
.+|+|.+|.+|+.. .+|-||...+- ...+.|+.++++. .+.|+.+ |.+.+.+ ..+..|.
T Consensus 3 l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~---~~~~kT~~~~~t~---~P~Wne~--f~~~~~~-------~~~~~l~ 67 (128)
T cd04024 3 LRVHVVEAKDLAAKDRSGKGKSDPYAILSVG---AQRFKTQTIPNTL---NPKWNYW--CEFPIFS-------AQNQLLK 67 (128)
T ss_pred EEEEEEEeeCCCcccCCCCCCcCCeEEEEEC---CEEEecceecCCc---CCccCCc--EEEEecC-------CCCCEEE
Confidence 57999999999852 45789998873 2356777777763 4557765 4444543 2456799
Q ss_pred EEEeeccc
Q psy7271 235 YQVWCSPL 242 (305)
Q Consensus 235 fEVwG~~~ 242 (305)
|+||-+..
T Consensus 68 i~v~d~~~ 75 (128)
T cd04024 68 LILWDKDR 75 (128)
T ss_pred EEEEECCC
Confidence 99998764
No 56
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=92.35 E-value=0.53 Score=38.83 Aligned_cols=72 Identities=14% Similarity=0.169 Sum_probs=51.0
Q ss_pred EEEEEEeeccCCCcc----cCceEEEEEeCCCCccceeeCcccCCCCCCCeeeeEEEEEEEe-ecCCccccccccCCcEE
Q psy7271 160 QFRITVLQAVGISTE----YSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNLTSA-TAAHAAPLHPHQSTSQI 234 (305)
Q Consensus 160 ~FrVtIlqAsGLp~~----ysdVFCQy~F~~~~ee~fsTePvknt~~~~~~~F~hvq~~~V~-VTee~~fl~yl~~~~L~ 234 (305)
...|+|++|.+|++. .++.|++...+........|...++ ..+.|+.+ |.+. ++++ . +.+..|.
T Consensus 17 ~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~----~nP~fnE~--F~f~~i~~~--~---l~~~~L~ 85 (124)
T cd08389 17 KLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG----PNPVFNET--FTFSRVEPE--E---LNNMALR 85 (124)
T ss_pred EEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC----CCCcccCE--EEECCCCHH--H---hccCEEE
Confidence 358999999999964 4568998777665544566665443 34568776 5555 6655 3 5788899
Q ss_pred EEEeeccc
Q psy7271 235 YQVWCSPL 242 (305)
Q Consensus 235 fEVwG~~~ 242 (305)
|+||.+..
T Consensus 86 ~~V~~~~~ 93 (124)
T cd08389 86 FRLYGVER 93 (124)
T ss_pred EEEEECCC
Confidence 99999854
No 57
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=92.27 E-value=0.48 Score=38.85 Aligned_cols=70 Identities=10% Similarity=0.039 Sum_probs=47.5
Q ss_pred EEEEEeeccCCCc----ccCceEEEEEeCCCCccceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcEEEE
Q psy7271 161 FRITVLQAVGIST----EYSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQIYQ 236 (305)
Q Consensus 161 FrVtIlqAsGLp~----~ysdVFCQy~F~~~~ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L~fE 236 (305)
.+|+|++|.+|+. ..+|.||...+..+ ...|+-++++ ..+.|+.. |.+.+... .-+....|.|+
T Consensus 2 L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~---~~rT~v~~~t---~nP~Wne~--f~f~~~~~----~~~~~~~l~~~ 69 (127)
T cd04022 2 LVVEVVDAQDLMPKDGQGSSSAYVELDFDGQ---KKRTRTKPKD---LNPVWNEK--LVFNVSDP----SRLSNLVLEVY 69 (127)
T ss_pred eEEEEEEeeCCCCCCCCCCcCcEEEEEECCE---EecceeEcCC---CCCccceE--EEEEccCH----HHccCCeEEEE
Confidence 5799999999984 25679999987653 2456666655 35678765 55555432 11346689999
Q ss_pred Eeeccc
Q psy7271 237 VWCSPL 242 (305)
Q Consensus 237 VwG~~~ 242 (305)
||.+..
T Consensus 70 V~d~~~ 75 (127)
T cd04022 70 VYNDRR 75 (127)
T ss_pred EeeCCC
Confidence 999753
No 58
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=92.18 E-value=0.84 Score=37.05 Aligned_cols=67 Identities=19% Similarity=0.255 Sum_probs=46.8
Q ss_pred EEEEEeeccCCCcc----cCceEEEEEeCCCCccceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcEEEE
Q psy7271 161 FRITVLQAVGISTE----YSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQIYQ 236 (305)
Q Consensus 161 FrVtIlqAsGLp~~----ysdVFCQy~F~~~~ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L~fE 236 (305)
.+|+|.+|.+|+.. .+|-||+..+-+ ....|+.++++. .+.|+.+-.| .+... ....|.|+
T Consensus 2 L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~---~~~kT~v~~~t~---nP~Wne~f~f--~~~~~-------~~~~l~~~ 66 (123)
T cd04025 2 LRCHVLEARDLAPKDRNGTSDPFVRVFYNG---QTLETSVVKKSC---YPRWNEVFEF--ELMEG-------ADSPLSVE 66 (123)
T ss_pred EEEEEEEeeCCCCCCCCCCcCceEEEEECC---EEEeceeecCCC---CCccCcEEEE--EcCCC-------CCCEEEEE
Confidence 57999999999853 467999998843 235677777663 4568776444 45443 25679999
Q ss_pred Eeeccc
Q psy7271 237 VWCSPL 242 (305)
Q Consensus 237 VwG~~~ 242 (305)
||-+..
T Consensus 67 v~d~~~ 72 (123)
T cd04025 67 VWDWDL 72 (123)
T ss_pred EEECCC
Confidence 998754
No 59
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=91.89 E-value=0.72 Score=37.45 Aligned_cols=74 Identities=16% Similarity=0.196 Sum_probs=49.1
Q ss_pred EEEEEEeeccCCCcc----cCceEEEEEeCCCCccceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcEEE
Q psy7271 160 QFRITVLQAVGISTE----YSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQIY 235 (305)
Q Consensus 160 ~FrVtIlqAsGLp~~----ysdVFCQy~F~~~~ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L~f 235 (305)
+.+|+|++|.+|+.. -+|.||+..+.+.+ .+.|...++.+ ..+.|+.. |.+.+.+. .+ --....|.|
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~--~~~T~~~~~~~--~~P~Wne~--f~f~v~~~--~~-~~~~~~l~~ 71 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPSH--KQSTPVDRDGG--TNPTWNET--LRFPLDER--LL-QQGRLALTI 71 (125)
T ss_pred CEEEEEEEcccCCCCCcccCCceEEEEEECCCc--ccccccccCCC--CCCCCCCE--EEEEcChH--hc-ccCccEEEE
Confidence 468999999999953 24599999997622 35665554432 35568765 55556555 22 123567999
Q ss_pred EEeeccc
Q psy7271 236 QVWCSPL 242 (305)
Q Consensus 236 EVwG~~~ 242 (305)
+||-+..
T Consensus 72 ~v~d~~~ 78 (125)
T cd04051 72 EVYCERP 78 (125)
T ss_pred EEEECCC
Confidence 9998754
No 60
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=91.61 E-value=0.99 Score=39.19 Aligned_cols=70 Identities=11% Similarity=0.072 Sum_probs=49.1
Q ss_pred EEEEEEeeccCCCcc------------------cCceEEEEEeCCCCccceeeCcccCCCCCCCeeeeEEEEEEEeecCC
Q psy7271 160 QFRITVLQAVGISTE------------------YSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAH 221 (305)
Q Consensus 160 ~FrVtIlqAsGLp~~------------------ysdVFCQy~F~~~~ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee 221 (305)
++.|+|.+|.+||.. .+|-||+..|.+.. ..|..++|+ .++.|+.+-.|.+.+ .+
T Consensus 1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~---~kT~v~~~t---~nPvWNE~f~f~v~~-p~ 73 (151)
T cd04018 1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQK---VKTSVKKNS---YNPEWNEQIVFPEMF-PP 73 (151)
T ss_pred CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEe---eecceEcCC---CCCCcceEEEEEeeC-CC
Confidence 368999999999962 46899999987643 467777776 356788775554332 22
Q ss_pred ccccccccCCcEEEEEeecccc
Q psy7271 222 AAPLHPHQSTSQIYQVWCSPLA 243 (305)
Q Consensus 222 ~~fl~yl~~~~L~fEVwG~~~~ 243 (305)
..+.|.|+||-+...
T Consensus 74 -------~~~~l~~~v~D~d~~ 88 (151)
T cd04018 74 -------LCERIKIQIRDWDRV 88 (151)
T ss_pred -------cCCEEEEEEEECCCC
Confidence 134799999998653
No 61
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=91.49 E-value=1.2 Score=32.87 Aligned_cols=70 Identities=14% Similarity=0.111 Sum_probs=48.7
Q ss_pred EEEEEeeccCCCcc----cCceEEEEEeCCCCccceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcEEEE
Q psy7271 161 FRITVLQAVGISTE----YSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQIYQ 236 (305)
Q Consensus 161 FrVtIlqAsGLp~~----ysdVFCQy~F~~~~ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L~fE 236 (305)
++|+|.+|.+|+.. ..+.||.+.+....-....|+-+.++. .+.|+.. |.+.++.. . ...|.|+
T Consensus 2 l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~---~P~w~e~--~~~~~~~~--~-----~~~l~i~ 69 (101)
T smart00239 2 LTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTL---NPVWNET--FEFEVPPP--E-----LAELEIE 69 (101)
T ss_pred eEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCC---CCcccce--EEEEecCc--c-----cCEEEEE
Confidence 67899999999865 345999999976421235566555542 4578775 55556554 1 6789999
Q ss_pred Eeeccc
Q psy7271 237 VWCSPL 242 (305)
Q Consensus 237 VwG~~~ 242 (305)
||.+..
T Consensus 70 v~~~~~ 75 (101)
T smart00239 70 VYDKDR 75 (101)
T ss_pred EEecCC
Confidence 999864
No 62
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=91.26 E-value=0.98 Score=38.99 Aligned_cols=79 Identities=10% Similarity=0.211 Sum_probs=51.8
Q ss_pred EEEEEeeccCCCcc--cCceEEEEEeCCCCc--cceeeCcccCCCCCCCeeeeEEEEEEEeecCC------ccccccccC
Q psy7271 161 FRITVLQAVGISTE--YSDIFCQFNFLHRHD--EAFSTEPVKNTGKGTPLGFYHIQNLTSATAAH------AAPLHPHQS 230 (305)
Q Consensus 161 FrVtIlqAsGLp~~--ysdVFCQy~F~~~~e--e~fsTePvknt~~~~~~~F~hvq~~~V~VTee------~~fl~yl~~ 230 (305)
.+|+|.+|.+|+.. .+|-||...+.+... ....|.-++++ ..+.|+.+-.|.+..... -+..+-++.
T Consensus 2 L~V~Vi~ArnL~~~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t---~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~ 78 (148)
T cd04010 2 LSVRVIECSDLALKNGTCDPYASVTLIYSNKKQDTKRTKVKKKT---NNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEK 78 (148)
T ss_pred EEEEEEeCcCCCCCCCCCCceEEEEEeCCcccCcccCCccEeCC---CCCccceEEEEEEecccccccccccCCcccccE
Confidence 57999999999874 678999999987432 24556666666 356788776666531110 001123455
Q ss_pred CcEEEEEeeccc
Q psy7271 231 TSQIYQVWCSPL 242 (305)
Q Consensus 231 ~~L~fEVwG~~~ 242 (305)
..|.|+||.+..
T Consensus 79 ~~L~i~V~d~~~ 90 (148)
T cd04010 79 LELRVDLWHASM 90 (148)
T ss_pred EEEEEEEEcCCC
Confidence 679999997754
No 63
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=91.20 E-value=1.3 Score=36.47 Aligned_cols=67 Identities=15% Similarity=0.200 Sum_probs=47.5
Q ss_pred EEEEEeeccCCCcc-----cCceEEEEEeCCCCccceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcEEE
Q psy7271 161 FRITVLQAVGISTE-----YSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQIY 235 (305)
Q Consensus 161 FrVtIlqAsGLp~~-----ysdVFCQy~F~~~~ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L~f 235 (305)
.+|+|.+|.||+.. .+|-||+..+.+. ....|...++|. .+.|+.+ |.+.|++. . ..|.|
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~--~~~kT~v~~kt~---~P~WnE~--F~f~v~~~--~------~~l~~ 66 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQE--EVFRTKTVEKSL---CPFFGED--FYFEIPRT--F------RHLSF 66 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEECCc--cEEEeeEEECCC---CCccCCe--EEEEcCCC--C------CEEEE
Confidence 36899999999974 4689999988432 346677777763 4458777 55556654 1 36999
Q ss_pred EEeeccc
Q psy7271 236 QVWCSPL 242 (305)
Q Consensus 236 EVwG~~~ 242 (305)
+||-+..
T Consensus 67 ~v~d~~~ 73 (121)
T cd08401 67 YIYDRDV 73 (121)
T ss_pred EEEECCC
Confidence 9998764
No 64
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=91.18 E-value=1.2 Score=36.68 Aligned_cols=67 Identities=19% Similarity=0.186 Sum_probs=48.5
Q ss_pred EEEEEEeeccCCCcc----cCceEEEEEeCCCCccceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcEEE
Q psy7271 160 QFRITVLQAVGISTE----YSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQIY 235 (305)
Q Consensus 160 ~FrVtIlqAsGLp~~----ysdVFCQy~F~~~~ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L~f 235 (305)
..+|+|++|.+|+.. .+|-||...+-++ .+.|+.++++ ..+.|+....|.+ .. .+..|.|
T Consensus 4 ~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~---~~kT~v~~~t---~nP~Wne~f~f~~--~~--------~~~~l~i 67 (126)
T cd04046 4 VTQVHVHSAEGLSKQDSGGGADPYVIIKCEGE---SVRSPVQKDT---LSPEFDTQAIFYR--KK--------PRSPIKI 67 (126)
T ss_pred EEEEEEEeCcCCCCCCCCCCcCccEEEEECCE---EEEeCccCCC---CCCcccceEEEEe--cC--------CCCEEEE
Confidence 468999999999863 5679999987653 4678877766 3567888765543 22 1457999
Q ss_pred EEeeccc
Q psy7271 236 QVWCSPL 242 (305)
Q Consensus 236 EVwG~~~ 242 (305)
+||-++.
T Consensus 68 ~V~d~~~ 74 (126)
T cd04046 68 QVWNSNL 74 (126)
T ss_pred EEEECCC
Confidence 9998754
No 65
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=91.15 E-value=1.1 Score=36.79 Aligned_cols=73 Identities=12% Similarity=0.156 Sum_probs=49.3
Q ss_pred eEEEEEEeeccCCCcc----cCceEEEEEeCCCC--ccceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCc
Q psy7271 159 LQFRITVLQAVGISTE----YSDIFCQFNFLHRH--DEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTS 232 (305)
Q Consensus 159 ~~FrVtIlqAsGLp~~----ysdVFCQy~F~~~~--ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~ 232 (305)
-.++|+|.+|.+|+.. .+|.||...+.+.. .....|+-++++ ..+.|+.+-.| .+... . ....
T Consensus 13 ~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~---~~P~wne~f~~--~~~~~--~----~~~~ 81 (131)
T cd04026 13 NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKT---LNPVWNETFTF--DLKPA--D----KDRR 81 (131)
T ss_pred CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCC---CCCCccceEEE--eCCch--h----cCCE
Confidence 3478999999999853 57799999886432 234667666665 35568776444 45443 1 3457
Q ss_pred EEEEEeeccc
Q psy7271 233 QIYQVWCSPL 242 (305)
Q Consensus 233 L~fEVwG~~~ 242 (305)
|.|+||.+..
T Consensus 82 l~v~v~d~~~ 91 (131)
T cd04026 82 LSIEVWDWDR 91 (131)
T ss_pred EEEEEEECCC
Confidence 9999998754
No 66
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=90.93 E-value=1.2 Score=37.47 Aligned_cols=73 Identities=11% Similarity=0.076 Sum_probs=52.2
Q ss_pred EEEEEEeeccCCCcc-cCceEEEEEeCCCCc-cceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcEEEEE
Q psy7271 160 QFRITVLQAVGISTE-YSDIFCQFNFLHRHD-EAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQIYQV 237 (305)
Q Consensus 160 ~FrVtIlqAsGLp~~-ysdVFCQy~F~~~~e-e~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L~fEV 237 (305)
...|+|++|.+|+.. .||-|++-..+.... .-..|.-.++| .++.|+-+ |+..|+.+ . |++..|.|.|
T Consensus 15 ~L~V~vikA~~L~~~g~sDPYVKv~L~~~~k~~k~kT~v~rkt---lnPvfnE~--f~F~v~~~--~---l~~~tL~~~V 84 (118)
T cd08677 15 ELHVNILEAENISVDAGCECYISGCVSVSEGQKEAQTALKKLA---LHTQWEEE--LVFPLPEE--E---SLDGTLTLTL 84 (118)
T ss_pred EEEEEEEEecCCCCCCCCCeEEEEEEcCCcCccEEEcceecCC---CCCccccE--EEEeCCHH--H---hCCcEEEEEE
Confidence 457899999999854 678999999875322 24556555555 34568777 44457766 4 6899999999
Q ss_pred eeccc
Q psy7271 238 WCSPL 242 (305)
Q Consensus 238 wG~~~ 242 (305)
|-+.+
T Consensus 85 ~d~Dr 89 (118)
T cd08677 85 RCCDR 89 (118)
T ss_pred EeCCC
Confidence 98754
No 67
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=90.65 E-value=1.7 Score=35.55 Aligned_cols=69 Identities=13% Similarity=0.272 Sum_probs=47.4
Q ss_pred EEEEEeeccCCCcc----cCceEEEEEeCCCCc----cceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCc
Q psy7271 161 FRITVLQAVGISTE----YSDIFCQFNFLHRHD----EAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTS 232 (305)
Q Consensus 161 FrVtIlqAsGLp~~----ysdVFCQy~F~~~~e----e~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~ 232 (305)
.+|+|..|.+|+.. .+|-||+....+... ....|+.++++ ..+.|+.. |.+.+... ...
T Consensus 2 L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t---~nP~Wne~--f~f~~~~~--------~~~ 68 (133)
T cd04033 2 LRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKT---LNPKWNEE--FFFRVNPR--------EHR 68 (133)
T ss_pred EEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCC---CCCcEeeE--EEEEEcCC--------CCE
Confidence 57999999999864 467999999876521 13456666665 34568765 54555443 235
Q ss_pred EEEEEeeccc
Q psy7271 233 QIYQVWCSPL 242 (305)
Q Consensus 233 L~fEVwG~~~ 242 (305)
|.|+||.+..
T Consensus 69 l~~~v~d~~~ 78 (133)
T cd04033 69 LLFEVFDENR 78 (133)
T ss_pred EEEEEEECCC
Confidence 8999998754
No 68
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=90.07 E-value=1.7 Score=35.65 Aligned_cols=68 Identities=15% Similarity=0.232 Sum_probs=47.1
Q ss_pred EEEEeeccCCCcc--cCceEEEEEeCCCCccceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcEEEEEee
Q psy7271 162 RITVLQAVGISTE--YSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQIYQVWC 239 (305)
Q Consensus 162 rVtIlqAsGLp~~--ysdVFCQy~F~~~~ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L~fEVwG 239 (305)
.|+|++|.||+.. -+|.||...+-.. ...+.|+.++++ ..+.|+..-.| .++++ +..|.|+||-
T Consensus 2 ~v~v~~A~~L~~~~g~~dpyv~v~~~~~-~~~~kT~v~~~t---~nP~Wne~f~f--~~~~~--------~~~l~~~v~d 67 (126)
T cd08678 2 LVKNIKANGLSEAAGSSNPYCVLEMDEP-PQKYQSSTQKNT---SNPFWDEHFLF--ELSPN--------SKELLFEVYD 67 (126)
T ss_pred EEEEEEecCCCCCCCCcCCEEEEEECCC-CcEEEeEEEecC---CCCccCceEEE--EeCCC--------CCEEEEEEEE
Confidence 4899999999873 3469999987432 234678888777 34578877544 45432 4569999998
Q ss_pred cccc
Q psy7271 240 SPLA 243 (305)
Q Consensus 240 ~~~~ 243 (305)
+...
T Consensus 68 ~~~~ 71 (126)
T cd08678 68 NGKK 71 (126)
T ss_pred CCCC
Confidence 7553
No 69
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=89.98 E-value=1.5 Score=36.87 Aligned_cols=65 Identities=11% Similarity=0.136 Sum_probs=47.0
Q ss_pred EEEEeeccCCCcccCceEEEEEeCCCC--ccceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcEEEEEee
Q psy7271 162 RITVLQAVGISTEYSDIFCQFNFLHRH--DEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQIYQVWC 239 (305)
Q Consensus 162 rVtIlqAsGLp~~ysdVFCQy~F~~~~--ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L~fEVwG 239 (305)
.|+|.+|.||+ ..+|-||.+.+.... ...+.|..+++|. .+.|+..-.| ++.. +..|.|.||=
T Consensus 2 ~V~V~~A~~L~-~~sDPYV~l~v~~~~~~~~~~KTk~i~~Tl---nPvWnE~F~i--~l~~---------s~~L~~~v~d 66 (118)
T cd08686 2 NVIVHSAQGFK-QSANLYCTLEVDSFGYFVKKAKTRVCRDTT---EPNWNEEFEI--ELEG---------SQTLRILCYE 66 (118)
T ss_pred EEEEEeCCCCC-CCCCCEEEEEEcCccccceeeeeeeecCCC---CCccceEEEE--EeCC---------CCEEEEEEEE
Confidence 68999999997 469999999886532 2457788887773 4678776444 4432 2368899997
Q ss_pred cc
Q psy7271 240 SP 241 (305)
Q Consensus 240 ~~ 241 (305)
+.
T Consensus 67 ~~ 68 (118)
T cd08686 67 KC 68 (118)
T ss_pred cc
Confidence 63
No 70
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=89.72 E-value=0.58 Score=37.96 Aligned_cols=42 Identities=26% Similarity=0.340 Sum_probs=37.3
Q ss_pred eEEEEeeeEeecccccccCcceeeeEEcCCC-CeeEEEEEEEE
Q psy7271 37 FRLVGRAFVYLSNLMYPIPLIQKVAIVNEKG-DVKGHLKIAVQ 78 (305)
Q Consensus 37 ~~lIGrA~VyL~nL~y~V~l~~~V~Ivs~~G-ev~G~L~V~V~ 78 (305)
..+||.+.+-|..|...-+.+..+++.+.+| +..|.|+|.+.
T Consensus 76 ~~~iG~~~~~l~~l~~~~~~~~~~~L~~~~~~~~~G~l~l~~~ 118 (121)
T cd04042 76 DDFMGSAFVDLSTLELNKPTEVKLKLEDPNSDEDLGYISLVVT 118 (121)
T ss_pred CcceEEEEEEHHHcCCCCCeEEEEECCCCCCccCceEEEEEEE
Confidence 3579999999999999999999999998886 67899999875
No 71
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=89.62 E-value=2.2 Score=34.11 Aligned_cols=67 Identities=18% Similarity=0.274 Sum_probs=46.6
Q ss_pred EEEEEEeeccCCCcc----cCceEEEEEeCCCCccceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcEEE
Q psy7271 160 QFRITVLQAVGISTE----YSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQIY 235 (305)
Q Consensus 160 ~FrVtIlqAsGLp~~----ysdVFCQy~F~~~~ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L~f 235 (305)
+++|+|.+|.+|+.. .+|-||...+.+. ...|+.++++ ..+.|+.+ |.+.+.+. ...|.|
T Consensus 2 ~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~---~~~T~~~~~t---~nP~W~e~--f~~~~~~~--------~~~l~~ 65 (119)
T cd08377 2 FLQVKVIRASGLAAADIGGKSDPFCVLELVNA---RLQTHTIYKT---LNPEWNKI--FTFPIKDI--------HDVLEV 65 (119)
T ss_pred EEEEEEEeeeCCCCCCCCCCCCcEEEEEECCE---eeecceecCC---cCCccCcE--EEEEecCc--------CCEEEE
Confidence 467999999999853 4678999887543 3567777776 34568776 44445431 357999
Q ss_pred EEeeccc
Q psy7271 236 QVWCSPL 242 (305)
Q Consensus 236 EVwG~~~ 242 (305)
+||-+..
T Consensus 66 ~v~d~~~ 72 (119)
T cd08377 66 TVYDEDK 72 (119)
T ss_pred EEEECCC
Confidence 9998754
No 72
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=89.61 E-value=1.8 Score=35.05 Aligned_cols=68 Identities=9% Similarity=0.153 Sum_probs=47.0
Q ss_pred EEEEEeeccCCCcc----cCceEEEEEeCCCCccceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcEEEE
Q psy7271 161 FRITVLQAVGISTE----YSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQIYQ 236 (305)
Q Consensus 161 FrVtIlqAsGLp~~----ysdVFCQy~F~~~~ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L~fE 236 (305)
.+|+|.+|.+|+.. .+|-||+..+-+. ..+.|+.++++ ..+.|++.-.| .+. + + +..|.|+
T Consensus 2 L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~--~~~kT~~~~~t---~nP~Wne~f~f--~v~-~------~-~~~l~~~ 66 (121)
T cd04042 2 LDIHLKEGRNLAARDRGGTSDPYVKFKYGGK--TVYKSKTIYKN---LNPVWDEKFTL--PIE-D------V-TQPLYIK 66 (121)
T ss_pred eEEEEEEeeCCCCcCCCCCCCCeEEEEECCE--EEEEeeeccCC---CCCccceeEEE--Eec-C------C-CCeEEEE
Confidence 57999999999852 5679999987542 35677777766 35678866444 442 2 1 3579999
Q ss_pred Eeecccc
Q psy7271 237 VWCSPLA 243 (305)
Q Consensus 237 VwG~~~~ 243 (305)
||-+...
T Consensus 67 v~D~d~~ 73 (121)
T cd04042 67 VFDYDRG 73 (121)
T ss_pred EEeCCCC
Confidence 9987543
No 73
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=89.17 E-value=2 Score=37.22 Aligned_cols=68 Identities=13% Similarity=0.191 Sum_probs=47.5
Q ss_pred EEEEEEeeccCCCcc-----cCceEEEEEeCCCCcc--ceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCc
Q psy7271 160 QFRITVLQAVGISTE-----YSDIFCQFNFLHRHDE--AFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTS 232 (305)
Q Consensus 160 ~FrVtIlqAsGLp~~-----ysdVFCQy~F~~~~ee--~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~ 232 (305)
...|+|++|.+|++. .+|-|++..++..... ..-|..++++ .++.|+..=.|.|. +.+..
T Consensus 30 ~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kkt---lnPvfNE~F~f~v~----------l~~~~ 96 (146)
T cd04028 30 QLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKT---LDPLYQQQLVFDVS----------PTGKT 96 (146)
T ss_pred EEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCC---CCCccCCeEEEEEc----------CCCCE
Confidence 478999999999852 5789999999765432 3456666666 34568776555433 35667
Q ss_pred EEEEEeec
Q psy7271 233 QIYQVWCS 240 (305)
Q Consensus 233 L~fEVwG~ 240 (305)
|.|+||.+
T Consensus 97 L~v~V~~d 104 (146)
T cd04028 97 LQVIVWGD 104 (146)
T ss_pred EEEEEEeC
Confidence 99999963
No 74
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=88.88 E-value=2.7 Score=36.55 Aligned_cols=73 Identities=15% Similarity=0.255 Sum_probs=49.7
Q ss_pred CeeEEEEEEeeccCCCc----ccCceEEEEEeCCCC--------------------------ccceeeCcccCCCCCCCe
Q psy7271 157 TELQFRITVLQAVGIST----EYSDIFCQFNFLHRH--------------------------DEAFSTEPVKNTGKGTPL 206 (305)
Q Consensus 157 ~~~~FrVtIlqAsGLp~----~ysdVFCQy~F~~~~--------------------------ee~fsTePvknt~~~~~~ 206 (305)
..+..+|+|.+|.||+. ..+|-||+..+.... .....|+.++++ ..+
T Consensus 26 ~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~t---lnP 102 (153)
T cd08676 26 PIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQT---LNP 102 (153)
T ss_pred CeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCC---CCC
Confidence 46789999999999975 367899999886421 123556665555 345
Q ss_pred eeeEEEEEEEeecCCccccccccCCcEEEEEeecc
Q psy7271 207 GFYHIQNLTSATAAHAAPLHPHQSTSQIYQVWCSP 241 (305)
Q Consensus 207 ~F~hvq~~~V~VTee~~fl~yl~~~~L~fEVwG~~ 241 (305)
.|+.+ |.+.+.+ +.+..|.|+||-+.
T Consensus 103 ~WnE~--F~f~v~~-------~~~~~L~i~V~D~d 128 (153)
T cd08676 103 VWNET--FRFEVED-------VSNDQLHLDIWDHD 128 (153)
T ss_pred ccccE--EEEEecc-------CCCCEEEEEEEecC
Confidence 67655 4444432 24568999999886
No 75
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=88.56 E-value=4.2 Score=34.96 Aligned_cols=68 Identities=16% Similarity=0.179 Sum_probs=47.0
Q ss_pred EEEEEeeccCCCcc----cCceEEEEEeCCCCccceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcEEEE
Q psy7271 161 FRITVLQAVGISTE----YSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQIYQ 236 (305)
Q Consensus 161 FrVtIlqAsGLp~~----ysdVFCQy~F~~~~ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L~fE 236 (305)
.+|+|.+|.+|++. .+|-||+..+.++ ...|...++.+ ..+.|+.. |.+.|++. . ...|.|+
T Consensus 2 L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~---~~kTk~~~~~t--~nP~WNE~--F~f~v~~~--~-----~~~l~v~ 67 (150)
T cd04019 2 LRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQ---VLRTRPSQTRN--GNPSWNEE--LMFVAAEP--F-----EDHLILS 67 (150)
T ss_pred EEEEEEEeECCCCCCCCCCCCeEEEEEECCE---EeeeEeccCCC--CCCcccCc--EEEEecCc--c-----CCeEEEE
Confidence 57999999999753 5679999999763 34566555432 35578765 55556654 2 2479999
Q ss_pred Eeeccc
Q psy7271 237 VWCSPL 242 (305)
Q Consensus 237 VwG~~~ 242 (305)
||-+..
T Consensus 68 V~d~~~ 73 (150)
T cd04019 68 VEDRVG 73 (150)
T ss_pred EEEecC
Confidence 998754
No 76
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=88.08 E-value=2.5 Score=30.66 Aligned_cols=67 Identities=22% Similarity=0.291 Sum_probs=44.3
Q ss_pred EEEEeeccCCCc----ccCceEEEEEeCCCCccceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcEEEEE
Q psy7271 162 RITVLQAVGIST----EYSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQIYQV 237 (305)
Q Consensus 162 rVtIlqAsGLp~----~ysdVFCQy~F~~~~ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L~fEV 237 (305)
.|+|.+|.+|+. ...+.||...+.+ .....|+..+++ ..+.|+.. |.+++... ....|.|+|
T Consensus 2 ~v~i~~~~~l~~~~~~~~~~~~v~v~~~~--~~~~~T~~~~~~---~~P~w~~~--~~~~~~~~-------~~~~l~i~v 67 (102)
T cd00030 2 RVTVIEARNLPAKDLNGKSDPYVKVSLGG--KQKFKTKVVKNT---LNPVWNET--FEFPVLDP-------ESDTLTVEV 67 (102)
T ss_pred EEEEEeeeCCCCcCCCCCCCcEEEEEecc--CceEecceeCCC---CCCcccce--EEEEccCC-------CCCEEEEEE
Confidence 689999999986 3556999999987 223556555544 23457555 44444432 455689999
Q ss_pred eeccc
Q psy7271 238 WCSPL 242 (305)
Q Consensus 238 wG~~~ 242 (305)
|-+..
T Consensus 68 ~~~~~ 72 (102)
T cd00030 68 WDKDR 72 (102)
T ss_pred EecCC
Confidence 98754
No 77
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=87.86 E-value=3.7 Score=33.72 Aligned_cols=67 Identities=16% Similarity=0.134 Sum_probs=45.4
Q ss_pred EEEEEEeeccCCCcc----cCceEEEEEeCCCCccceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcEEE
Q psy7271 160 QFRITVLQAVGISTE----YSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQIY 235 (305)
Q Consensus 160 ~FrVtIlqAsGLp~~----ysdVFCQy~F~~~~ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L~f 235 (305)
..+|+|+.|.||+.. .+|-||...+-+ ....|+.++++. .+.|+.+-.|. +... ...|.|
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~---~~~kT~~v~~t~---~P~Wne~f~f~--~~~~--------~~~l~i 65 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGK---TKKRTKTIPQNL---NPVWNEKFHFE--CHNS--------SDRIKV 65 (127)
T ss_pred eEEEEEEECcCCcCCCCCCCcCcEEEEEECC---EeeecceecCCC---CCccceEEEEE--ecCC--------CCEEEE
Confidence 468999999999853 457899998732 245678887763 45677654443 3221 236999
Q ss_pred EEeeccc
Q psy7271 236 QVWCSPL 242 (305)
Q Consensus 236 EVwG~~~ 242 (305)
+||-+..
T Consensus 66 ~v~d~d~ 72 (127)
T cd04027 66 RVWDEDD 72 (127)
T ss_pred EEEECCC
Confidence 9998754
No 78
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=87.73 E-value=3.8 Score=35.06 Aligned_cols=80 Identities=14% Similarity=0.171 Sum_probs=52.2
Q ss_pred EEEEEeeccCCCcc--------cCceEEEEEeCCCCccceeeCcccCCCCC-CCeeeeEEEEEEEeecCCcccc------
Q psy7271 161 FRITVLQAVGISTE--------YSDIFCQFNFLHRHDEAFSTEPVKNTGKG-TPLGFYHIQNLTSATAAHAAPL------ 225 (305)
Q Consensus 161 FrVtIlqAsGLp~~--------ysdVFCQy~F~~~~ee~fsTePvknt~~~-~~~~F~hvq~~~V~VTee~~fl------ 225 (305)
.||.|.+|.+++.. .+|+|++=-.....++.-.|.--.++-.| +.+++..+-.|...-++. .+
T Consensus 2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~--~~~~~~~~ 79 (133)
T cd08374 2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEK--KIVVIKKE 79 (133)
T ss_pred EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccc--eeEEEeec
Confidence 68999999997731 37899998777654445666666666433 344444443343323332 22
Q ss_pred --------ccccCCcEEEEEeeccc
Q psy7271 226 --------HPHQSTSQIYQVWCSPL 242 (305)
Q Consensus 226 --------~yl~~~~L~fEVwG~~~ 242 (305)
+++....|.++||=...
T Consensus 80 ~~~~~~~~e~~~~~~L~lqvwD~D~ 104 (133)
T cd08374 80 HFWSLDETEYKIPPKLTLQVWDNDK 104 (133)
T ss_pred cccccCcceEecCcEEEEEEEECcc
Confidence 67889999999998755
No 79
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=87.42 E-value=2.8 Score=33.29 Aligned_cols=68 Identities=12% Similarity=0.098 Sum_probs=46.7
Q ss_pred EEEEEeeccCCCcc-cCceEEEEEeCCCCccceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcEEEEEee
Q psy7271 161 FRITVLQAVGISTE-YSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQIYQVWC 239 (305)
Q Consensus 161 FrVtIlqAsGLp~~-ysdVFCQy~F~~~~ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L~fEVwG 239 (305)
.+|+|.+|.|||.. .+|.||...+.. ...+.|..+++ ..+.|++. |++.+..+ . +....|.|.||.
T Consensus 2 L~v~vi~a~~l~~~~~~dpyv~v~~~~--~~~~kT~~~~~----~~P~Wne~--f~f~v~~~--~---~~~~~l~i~v~d 68 (117)
T cd08383 2 LRLRILEAKNLPSKGTRDPYCTVSLDQ--VEVARTKTVEK----LNPFWGEE--FVFDDPPP--D---VTFFTLSFYNKD 68 (117)
T ss_pred eEEEEEEecCCCcCCCCCceEEEEECC--EEeEecceEEC----CCCcccce--EEEecCCc--c---ccEEEEEEEEEe
Confidence 46899999999985 567999999865 22456665544 24568876 44455554 2 344568899998
Q ss_pred cc
Q psy7271 240 SP 241 (305)
Q Consensus 240 ~~ 241 (305)
+.
T Consensus 69 ~~ 70 (117)
T cd08383 69 KR 70 (117)
T ss_pred cc
Confidence 75
No 80
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=87.31 E-value=3 Score=35.84 Aligned_cols=99 Identities=8% Similarity=0.161 Sum_probs=60.0
Q ss_pred EEEEEeeccCCCcc----cCceEEEEEeCCCCcc--ceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcEE
Q psy7271 161 FRITVLQAVGISTE----YSDIFCQFNFLHRHDE--AFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQI 234 (305)
Q Consensus 161 FrVtIlqAsGLp~~----ysdVFCQy~F~~~~ee--~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L~ 234 (305)
..|+|++|.+|++. ..|.|++-..+..... -..|.-.++|. .++.|+..-.| .|+.+ . .+-.|+
T Consensus 16 LtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~--~~P~fNEsF~F--dv~~~--~----~~v~l~ 85 (135)
T cd08692 16 IQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSN--GQVKWGETMIF--PVTQQ--E----HGIQFL 85 (135)
T ss_pred EEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCC--CCceecceEEE--eCCch--h----heeEEE
Confidence 67899999999873 2356999998865442 34466556663 23458777444 45555 2 246799
Q ss_pred EEEeeccc---cccccccc-cccc-cccccccccccccCc
Q psy7271 235 YQVWCSPL---ALYITSVC-QPLM-VNMSRLWWSTVMNSR 269 (305)
Q Consensus 235 fEVwG~~~---~~~~~~~~-~~~~-~~~~r~~~~~~~~~~ 269 (305)
++||.+.. ..++-++. -+-. ....+++|.+.|..|
T Consensus 86 v~v~d~~~~~~n~~IG~v~lG~~~~~~~~~~hW~~m~~~p 125 (135)
T cd08692 86 IKLYSRSSVRRKHFLGQVWISSDSSSSEAVEQWKDTIANP 125 (135)
T ss_pred EEEEeCCCCcCCceEEEEEECCccCCchhhhhHHHHHhCC
Confidence 99998854 22222222 1111 123468888877753
No 81
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=87.30 E-value=3.3 Score=34.08 Aligned_cols=68 Identities=9% Similarity=0.098 Sum_probs=44.9
Q ss_pred EEEEEEeeccCCCcc-cCceEEEEEeCCCCccceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcEEEEEe
Q psy7271 160 QFRITVLQAVGISTE-YSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQIYQVW 238 (305)
Q Consensus 160 ~FrVtIlqAsGLp~~-ysdVFCQy~F~~~~ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L~fEVw 238 (305)
..+|+|.+|.|||.. .+|-||...+-+. ....|.. +++ ..+.|+.. |.+.+... .+ ..|.|+||
T Consensus 5 ~L~V~Vi~A~~L~~~~~~DPYv~v~l~~~--~~~kT~v-~~~---~nP~WnE~--f~f~~~~~--~~-----~~l~v~v~ 69 (126)
T cd08400 5 SLQLNVLEAHKLPVKHVPHPYCVISLNEV--KVARTKV-REG---PNPVWSEE--FVFDDLPP--DV-----NSFTISLS 69 (126)
T ss_pred EEEEEEEEeeCCCCCCCCCeeEEEEECCE--eEEEeec-CCC---CCCccCCE--EEEecCCC--Cc-----CEEEEEEE
Confidence 478999999999976 6789999999542 2344553 333 34568776 44445444 22 25788998
Q ss_pred eccc
Q psy7271 239 CSPL 242 (305)
Q Consensus 239 G~~~ 242 (305)
-+..
T Consensus 70 d~~~ 73 (126)
T cd08400 70 NKAK 73 (126)
T ss_pred ECCC
Confidence 8643
No 82
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=86.57 E-value=3.4 Score=34.74 Aligned_cols=78 Identities=12% Similarity=0.140 Sum_probs=49.1
Q ss_pred EEEEeeccCCCcc---cCceEEEEEeCCCC-ccceeeCcccCCCCCCCeeeeEEEEEEEeecCCc------cccccccCC
Q psy7271 162 RITVLQAVGISTE---YSDIFCQFNFLHRH-DEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHA------APLHPHQST 231 (305)
Q Consensus 162 rVtIlqAsGLp~~---ysdVFCQy~F~~~~-ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee~------~fl~yl~~~ 231 (305)
+|+|.+|.+|+.. .+|.|+...+.... .....|+.++++. .+.|+..-.|.+.-..+- +-.+-+...
T Consensus 2 ~V~Vi~A~~L~~~~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~---nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~ 78 (137)
T cd08675 2 SVRVLECRDLALKSNGTCDPFARVTLNYSSKTDTKRTKVKKKTN---NPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKS 78 (137)
T ss_pred EEEEEEccCCCcccCCCCCcEEEEEEecCCcCCeeccceeeCCC---CCCcceEEEEEcccccccccccccccccccccc
Confidence 6899999999854 56799999887421 2345677777652 456777655543221100 001235788
Q ss_pred cEEEEEeeccc
Q psy7271 232 SQIYQVWCSPL 242 (305)
Q Consensus 232 ~L~fEVwG~~~ 242 (305)
.|.|+||-...
T Consensus 79 ~l~i~V~d~~~ 89 (137)
T cd08675 79 ELRVELWHASM 89 (137)
T ss_pred EEEEEEEcCCc
Confidence 99999998643
No 83
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=86.46 E-value=4.1 Score=32.77 Aligned_cols=73 Identities=14% Similarity=0.162 Sum_probs=48.3
Q ss_pred eEEEEEEeeccCCCcc------cCceEEEEEeCCCCc---cceeeCcccCCCCCCCeeeeEEEEEEEeecCCcccccccc
Q psy7271 159 LQFRITVLQAVGISTE------YSDIFCQFNFLHRHD---EAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQ 229 (305)
Q Consensus 159 ~~FrVtIlqAsGLp~~------ysdVFCQy~F~~~~e---e~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~ 229 (305)
+..+|+|.+|.+|+.. .+|.||...+..... ....|...++++. .+.|+.+-.|.+. .. +
T Consensus 2 ~~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~--~P~w~e~f~f~~~--~~-------~ 70 (128)
T cd00275 2 LTLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGF--NPVWNETFEFDVT--VP-------E 70 (128)
T ss_pred eEEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCc--CCccCCcEEEEEe--CC-------C
Confidence 5789999999999852 346999999876432 3466665555432 4568777555544 22 1
Q ss_pred CCcEEEEEeeccc
Q psy7271 230 STSQIYQVWCSPL 242 (305)
Q Consensus 230 ~~~L~fEVwG~~~ 242 (305)
...|.|+||-+..
T Consensus 71 ~~~l~~~V~d~~~ 83 (128)
T cd00275 71 LAFLRFVVYDEDS 83 (128)
T ss_pred eEEEEEEEEeCCC
Confidence 2358899998764
No 84
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=85.76 E-value=5.5 Score=33.17 Aligned_cols=68 Identities=16% Similarity=0.214 Sum_probs=46.6
Q ss_pred EEEEEEeeccCCCcc---cCceEEEEEeCCCCccceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcEEEE
Q psy7271 160 QFRITVLQAVGISTE---YSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQIYQ 236 (305)
Q Consensus 160 ~FrVtIlqAsGLp~~---ysdVFCQy~F~~~~ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L~fE 236 (305)
+.+|+|++|.+++.. -+|-||..++-+ ..+.|...++.+ .++.|+.+ |.+.|.+. . ..|.|+
T Consensus 3 ~L~v~v~~Ak~l~~~~~g~sDPYv~i~lg~---~~~kT~v~~~~~--~nP~WNe~--F~f~v~~~--~------~~l~~~ 67 (121)
T cd04016 3 RLSITVVQAKLVKNYGLTRMDPYCRIRVGH---AVYETPTAYNGA--KNPRWNKT--IQCTLPEG--V------DSIYIE 67 (121)
T ss_pred EEEEEEEEccCCCcCCCCCCCceEEEEECC---EEEEeEEccCCC--CCCccCeE--EEEEecCC--C------cEEEEE
Confidence 568999999987642 257999999844 245676665543 35578866 55556554 1 249999
Q ss_pred Eeeccc
Q psy7271 237 VWCSPL 242 (305)
Q Consensus 237 VwG~~~ 242 (305)
||-+..
T Consensus 68 V~d~d~ 73 (121)
T cd04016 68 IFDERA 73 (121)
T ss_pred EEeCCC
Confidence 999764
No 85
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=85.03 E-value=1.2 Score=38.58 Aligned_cols=75 Identities=19% Similarity=0.318 Sum_probs=52.0
Q ss_pred EEEEeeccCCCc------------ccC-----ceEEEEE--eCCCCccceeeCcccCCCCCCCeeeeEEEEEEEee-c--
Q psy7271 162 RITVLQAVGIST------------EYS-----DIFCQFN--FLHRHDEAFSTEPVKNTGKGTPLGFYHIQNLTSAT-A-- 219 (305)
Q Consensus 162 rVtIlqAsGLp~------------~ys-----dVFCQy~--F~~~~ee~fsTePvknt~~~~~~~F~hvq~~~V~V-T-- 219 (305)
.|.|..|+||.. +|+ +.||..+ |+.+.+ ...|.++.++ --+.|+|.-.|.+++ .
T Consensus 2 sv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e-~r~TrtVArS---FcPeF~Hh~Efpc~lv~~~ 77 (143)
T cd08683 2 SVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKE-LRRTRTVARS---FCPEFNHHVEFPCNLVVQR 77 (143)
T ss_pred eEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCc-eeeccchhhh---cCCCccceEEEecccEEEc
Confidence 366778888752 233 4678777 887666 7888888766 345899998888762 1
Q ss_pred ---CCccccccccCCcEEEEEeec
Q psy7271 220 ---AHAAPLHPHQSTSQIYQVWCS 240 (305)
Q Consensus 220 ---ee~~fl~yl~~~~L~fEVwG~ 240 (305)
+..-.-+-|++.-++||||=.
T Consensus 78 ~~Ge~~sLAElLe~~eiil~vwHr 101 (143)
T cd08683 78 NSGEAISLAELLESAEIILEVWHR 101 (143)
T ss_pred CCCccccHHHHhhcceEEeeeeec
Confidence 211134668999999999954
No 86
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=84.82 E-value=5.6 Score=34.11 Aligned_cols=66 Identities=11% Similarity=0.162 Sum_probs=46.8
Q ss_pred EEEEEeeccCCCcc---cCceEEEEEeCCCCccceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcEEEEE
Q psy7271 161 FRITVLQAVGISTE---YSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQIYQV 237 (305)
Q Consensus 161 FrVtIlqAsGLp~~---ysdVFCQy~F~~~~ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L~fEV 237 (305)
.+|+|++|.+|+.. -+|-||..++-++ ...|+.++++ .++.|+..-.|. +++. ...|.|+|
T Consensus 4 L~V~Vi~a~nL~~~d~~~sDPYV~v~~g~~---~~kT~vvk~t---~nP~WnE~f~f~--i~~~--------~~~l~~~V 67 (145)
T cd04038 4 LKVRVVRGTNLAVRDFTSSDPYVVLTLGNQ---KVKTRVIKKN---LNPVWNEELTLS--VPNP--------MAPLKLEV 67 (145)
T ss_pred EEEEEEeeECCCCCCCCCcCcEEEEEECCE---EEEeeeEcCC---CCCeecccEEEE--ecCC--------CCEEEEEE
Confidence 68999999999742 4579999988542 4567777765 356788764444 4432 45799999
Q ss_pred eeccc
Q psy7271 238 WCSPL 242 (305)
Q Consensus 238 wG~~~ 242 (305)
|-+..
T Consensus 68 ~D~d~ 72 (145)
T cd04038 68 FDKDT 72 (145)
T ss_pred EECCC
Confidence 98864
No 87
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=83.96 E-value=5.7 Score=33.78 Aligned_cols=69 Identities=16% Similarity=0.078 Sum_probs=46.5
Q ss_pred eEEEEEEeeccCCCcc---cCceEEEEEeCCCC----------ccceeeCcccCCCCCCCeee-eEEEEEEEeecCCccc
Q psy7271 159 LQFRITVLQAVGISTE---YSDIFCQFNFLHRH----------DEAFSTEPVKNTGKGTPLGF-YHIQNLTSATAAHAAP 224 (305)
Q Consensus 159 ~~FrVtIlqAsGLp~~---ysdVFCQy~F~~~~----------ee~fsTePvknt~~~~~~~F-~hvq~~~V~VTee~~f 224 (305)
+.|.|++.+|.+|+.. -+|-||+....... .....|+.++++- ++.| +..=.|. +..
T Consensus 1 ~~~~~~~~~A~~L~~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tl---nP~W~nE~f~f~--v~~---- 71 (137)
T cd08691 1 LSFSLSGLQARNLKKGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTI---NPVWHREQFVFV--GLP---- 71 (137)
T ss_pred CEEEEEEEEeCCCCCccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCC---CCceEceEEEEE--cCC----
Confidence 4689999999999864 25688988876433 2356777777763 4567 5554443 322
Q ss_pred cccccCCcEEEEEeecc
Q psy7271 225 LHPHQSTSQIYQVWCSP 241 (305)
Q Consensus 225 l~yl~~~~L~fEVwG~~ 241 (305)
++.|.|+||-+.
T Consensus 72 -----~~~L~v~V~D~~ 83 (137)
T cd08691 72 -----TDVLEIEVKDKF 83 (137)
T ss_pred -----CCEEEEEEEecC
Confidence 236999999853
No 88
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=83.12 E-value=7.3 Score=32.00 Aligned_cols=67 Identities=19% Similarity=0.193 Sum_probs=44.9
Q ss_pred EEEEEEeeccCCCccc---CceEEEEEeCCCCccceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcEEEE
Q psy7271 160 QFRITVLQAVGISTEY---SDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQIYQ 236 (305)
Q Consensus 160 ~FrVtIlqAsGLp~~y---sdVFCQy~F~~~~ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L~fE 236 (305)
..+|+|..|..++... +|-||+..+-+. ....|+.++++ ..+.|+.+-.|. +.+ ...|.|+
T Consensus 3 ~L~V~i~~a~l~~~~~~~~~dPyv~v~~~~~--~~~kT~v~~~t---~~P~Wne~f~~~--~~~---------~~~l~~~ 66 (125)
T cd04021 3 QLQITVESAKLKSNSKSFKPDPYVEVTVDGQ--PPKKTEVSKKT---SNPKWNEHFTVL--VTP---------QSTLEFK 66 (125)
T ss_pred eEEEEEEeeECCCCCcCCCCCeEEEEEECCc--ccEEeeeeCCC---CCCccccEEEEE--eCC---------CCEEEEE
Confidence 4678999998555443 568999988654 34667766665 345687764444 433 2469999
Q ss_pred Eeeccc
Q psy7271 237 VWCSPL 242 (305)
Q Consensus 237 VwG~~~ 242 (305)
||-+..
T Consensus 67 V~d~~~ 72 (125)
T cd04021 67 VWSHHT 72 (125)
T ss_pred EEeCCC
Confidence 999864
No 89
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=80.91 E-value=7.4 Score=31.68 Aligned_cols=65 Identities=14% Similarity=0.016 Sum_probs=45.4
Q ss_pred EeeccCCCcc--cCceEEEEEeCCCCccceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcEEEEEeeccc
Q psy7271 165 VLQAVGISTE--YSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQIYQVWCSPL 242 (305)
Q Consensus 165 IlqAsGLp~~--ysdVFCQy~F~~~~ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L~fEVwG~~~ 242 (305)
|.+|.+|+.. .+|.||+..+-.. ...|+.++++ ..+.|+.+ |.+.+... + .....|.|+||-+..
T Consensus 2 vi~a~~L~~~~g~~Dpyv~v~~~~~---~~kT~v~~~~---~nP~Wne~--f~f~~~~~--~---~~~~~l~~~v~d~~~ 68 (127)
T cd08373 2 VVSLKNLPGLKGKGDRIAKVTFRGV---KKKTRVLENE---LNPVWNET--FEWPLAGS--P---DPDESLEIVVKDYEK 68 (127)
T ss_pred eEEeeCCcccCCCCCCEEEEEECCE---eeecceeCCC---cCCcccce--EEEEeCCC--c---CCCCEEEEEEEECCC
Confidence 5677777763 3568999988542 3567877776 35678866 55566554 2 467789999999854
No 90
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=80.40 E-value=9.3 Score=30.12 Aligned_cols=68 Identities=16% Similarity=0.079 Sum_probs=44.5
Q ss_pred EeeccCCCcc----cCceEEEEEeCCCC---ccceeeCcccCCCCCCCeeeeEEEEEEEeecCCcccccccc-CCcEEEE
Q psy7271 165 VLQAVGISTE----YSDIFCQFNFLHRH---DEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQ-STSQIYQ 236 (305)
Q Consensus 165 IlqAsGLp~~----ysdVFCQy~F~~~~---ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~-~~~L~fE 236 (305)
+.+|.+|+.. .+|-||+..+.... .....|+.++++. .+.|+ .|.+++.+ +..-. ...|.||
T Consensus 6 ~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~---nP~Wn---~f~~~~~~----l~~~~~~~~l~~~ 75 (110)
T cd04047 6 QFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTL---NPVWK---PFTIPLQK----LCNGDYDRPIKIE 75 (110)
T ss_pred EEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCC---CCceE---EEEEEHHH----hcCCCcCCEEEEE
Confidence 4578888743 46799999887653 2347788888873 45688 36655422 22111 4689999
Q ss_pred Eeeccc
Q psy7271 237 VWCSPL 242 (305)
Q Consensus 237 VwG~~~ 242 (305)
||-+..
T Consensus 76 V~d~d~ 81 (110)
T cd04047 76 VYDYDS 81 (110)
T ss_pred EEEeCC
Confidence 998864
No 91
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=80.11 E-value=13 Score=30.07 Aligned_cols=72 Identities=10% Similarity=0.095 Sum_probs=45.9
Q ss_pred EEEEEEeeccCCCcc----cCceEEEEEeCCCCccceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcEEE
Q psy7271 160 QFRITVLQAVGISTE----YSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQIY 235 (305)
Q Consensus 160 ~FrVtIlqAsGLp~~----ysdVFCQy~F~~~~ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L~f 235 (305)
...|+|.+|.+|+.. -+|.||...+.+. ...|+..++. +..+.|+..-.| .+... .. .....|.|
T Consensus 2 ~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~~---~~~T~~~~~~--t~nP~Wne~f~f--~v~~~--~~--~~~~~l~v 70 (124)
T cd04049 2 TLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQ---ERKSKVAKGD--GRNPEWNEKFKF--TVEYP--GW--GGDTKLIL 70 (124)
T ss_pred eEEEEEEecCCCCCCCCCCCcCceEEEEECCE---eeeeeEcCCC--CCCCcccceEEE--EecCc--cc--CCCCEEEE
Confidence 357999999999853 2458999987542 2345555432 235568777444 45444 21 34568999
Q ss_pred EEeeccc
Q psy7271 236 QVWCSPL 242 (305)
Q Consensus 236 EVwG~~~ 242 (305)
+||-+..
T Consensus 71 ~V~d~~~ 77 (124)
T cd04049 71 RIMDKDN 77 (124)
T ss_pred EEEECcc
Confidence 9998754
No 92
>KOG1028|consensus
Probab=79.90 E-value=24 Score=35.58 Aligned_cols=74 Identities=16% Similarity=0.169 Sum_probs=50.9
Q ss_pred eEEEEEEeeccCCCc----ccCceEEEEEeCCCCccc--eeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCc
Q psy7271 159 LQFRITVLQAVGIST----EYSDIFCQFNFLHRHDEA--FSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTS 232 (305)
Q Consensus 159 ~~FrVtIlqAsGLp~----~ysdVFCQy~F~~~~ee~--fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~ 232 (305)
=...|.|++|.+|+. ..+|.|++-......... -.|.-.+++ .++.|+|+..| .|..+ .|++-.
T Consensus 298 g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~---~npv~nesf~F--~vp~~-----~l~~~~ 367 (421)
T KOG1028|consen 298 GRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSVKKKT---LNPVFNETFVF--DVPPE-----QLAEVS 367 (421)
T ss_pred CeEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeecccCC---CCCcccccEEE--eCCHH-----HhheeE
Confidence 345788999999994 367799998877655321 223223333 35679999888 45554 357788
Q ss_pred EEEEEeeccc
Q psy7271 233 QIYQVWCSPL 242 (305)
Q Consensus 233 L~fEVwG~~~ 242 (305)
|.|+||+|..
T Consensus 368 l~l~V~d~d~ 377 (421)
T KOG1028|consen 368 LELTVWDHDT 377 (421)
T ss_pred EEEEEEEccc
Confidence 9999999865
No 93
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=78.65 E-value=14 Score=31.01 Aligned_cols=66 Identities=14% Similarity=0.209 Sum_probs=44.9
Q ss_pred EEEEEeeccC---CCc----ccCceEEEEEeCCCCccceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcE
Q psy7271 161 FRITVLQAVG---IST----EYSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQ 233 (305)
Q Consensus 161 FrVtIlqAsG---Lp~----~ysdVFCQy~F~~~~ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L 233 (305)
..|+|.+|.| |+. .-+|-||..++-++ .+.|..++++ .++.|+-+-.| .+... ...|
T Consensus 2 L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~---~~rTk~~~~~---~nP~WnE~f~f--~v~~~--------~~~l 65 (126)
T cd08379 2 LEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPK---WVRTRTVEDS---SNPRWNEQYTW--PVYDP--------CTVL 65 (126)
T ss_pred eEEEEEEeECCccccccccCCCCCeeEEEEECCE---EeEcCcccCC---CCCcceeEEEE--EecCC--------CCEE
Confidence 4689999999 663 24679999998442 4567777776 34568655444 44332 2369
Q ss_pred EEEEeeccc
Q psy7271 234 IYQVWCSPL 242 (305)
Q Consensus 234 ~fEVwG~~~ 242 (305)
.|+||-+..
T Consensus 66 ~v~V~d~d~ 74 (126)
T cd08379 66 TVGVFDNSQ 74 (126)
T ss_pred EEEEEECCC
Confidence 999999854
No 94
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=77.79 E-value=12 Score=32.26 Aligned_cols=68 Identities=12% Similarity=0.121 Sum_probs=45.3
Q ss_pred EEEEEEeeccCCCcc----------------------------------cCceEEEEEeCCCCccceeeCcccCCCCCCC
Q psy7271 160 QFRITVLQAVGISTE----------------------------------YSDIFCQFNFLHRHDEAFSTEPVKNTGKGTP 205 (305)
Q Consensus 160 ~FrVtIlqAsGLp~~----------------------------------ysdVFCQy~F~~~~ee~fsTePvknt~~~~~ 205 (305)
+++|+|.+|.+||.- .+|.||...+-+. ....|..++++ .+
T Consensus 8 ~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~--~~~rT~v~~~~---~n 82 (158)
T cd04015 8 TLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGA--RVARTRVIENS---EN 82 (158)
T ss_pred eeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCe--EeeEEEEeCCC---CC
Confidence 468899999999852 2579999998542 23567777766 35
Q ss_pred eeeeEEEEEEEeecCCccccccccCCcEEEEEeeccc
Q psy7271 206 LGFYHIQNLTSATAAHAAPLHPHQSTSQIYQVWCSPL 242 (305)
Q Consensus 206 ~~F~hvq~~~V~VTee~~fl~yl~~~~L~fEVwG~~~ 242 (305)
+.|+.+ |.+.+... ...|.|+||-+..
T Consensus 83 P~WnE~--F~~~~~~~--------~~~l~~~V~d~d~ 109 (158)
T cd04015 83 PVWNES--FHIYCAHY--------ASHVEFTVKDNDV 109 (158)
T ss_pred CccceE--EEEEccCC--------CCEEEEEEEeCCC
Confidence 678776 44444332 1358999997653
No 95
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=76.25 E-value=16 Score=29.95 Aligned_cols=65 Identities=12% Similarity=0.143 Sum_probs=42.7
Q ss_pred EEEEEeeccCCCcc--------------cCceEEEEEeCCCCccceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccc
Q psy7271 161 FRITVLQAVGISTE--------------YSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLH 226 (305)
Q Consensus 161 FrVtIlqAsGLp~~--------------ysdVFCQy~F~~~~ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~ 226 (305)
.+|+|.+|.+|+.. .+|.||...+-+. ....|.-.+++ ..+.|+-+ |.+.|++
T Consensus 6 l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~--~~~kT~~~~~t---~~P~Wne~--f~~~v~~------ 72 (132)
T cd04014 6 LKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDT--HIGKTSTKPKT---NSPVWNEE--FTTEVHN------ 72 (132)
T ss_pred EEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCE--EEeEEeEcCCC---CCCCccee--EEEEcCC------
Confidence 68999999999753 2579999988532 23345544444 24557666 4445543
Q ss_pred cccCCcEEEEEeecc
Q psy7271 227 PHQSTSQIYQVWCSP 241 (305)
Q Consensus 227 yl~~~~L~fEVwG~~ 241 (305)
...|.|+||-+.
T Consensus 73 ---~~~l~~~v~d~~ 84 (132)
T cd04014 73 ---GRNLELTVFHDA 84 (132)
T ss_pred ---CCEEEEEEEeCC
Confidence 246899999764
No 96
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=75.91 E-value=15 Score=29.98 Aligned_cols=67 Identities=12% Similarity=0.020 Sum_probs=44.2
Q ss_pred EEEEEeeccCCCcc----cCceEEEEEeCCCCccceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcEEEE
Q psy7271 161 FRITVLQAVGISTE----YSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQIYQ 236 (305)
Q Consensus 161 FrVtIlqAsGLp~~----ysdVFCQy~F~~~~ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L~fE 236 (305)
.+|+|..|.+|+.. .+|.||...+-+. ....|+-++++ ..+.|+.+ |.+.+... +..|.|+
T Consensus 3 L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~--~~~kT~~~~~t---~~P~Wne~--f~~~v~~~--------~~~L~v~ 67 (120)
T cd04045 3 LRLHIRKANDLKNLEGVGKIDPYVRVLVNGI--VKGRTVTISNT---LNPVWDEV--LYVPVTSP--------NQKITLE 67 (120)
T ss_pred EEEEEEeeECCCCccCCCCcCCEEEEEECCE--EeeceeEECCC---cCCccCce--EEEEecCC--------CCEEEEE
Confidence 47899999999974 4568999987432 34556555554 34568765 44444332 2479999
Q ss_pred Eeeccc
Q psy7271 237 VWCSPL 242 (305)
Q Consensus 237 VwG~~~ 242 (305)
||-+..
T Consensus 68 v~d~~~ 73 (120)
T cd04045 68 VMDYEK 73 (120)
T ss_pred EEECCC
Confidence 998754
No 97
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=74.18 E-value=33 Score=28.34 Aligned_cols=82 Identities=9% Similarity=0.139 Sum_probs=53.9
Q ss_pred CCeeEEEEEEeeccCCCcccCceEEEEEeCCCCccceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcEEE
Q psy7271 156 GTELQFRITVLQAVGISTEYSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQIY 235 (305)
Q Consensus 156 G~~~~FrVtIlqAsGLp~~ysdVFCQy~F~~~~ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L~f 235 (305)
.-++.|.|+|.++.++|..-..+|++...-........|++.... +..+.|++.-.+.+.+..+- -=..++.-.+.|
T Consensus 4 ~~kf~~~l~i~~l~~~p~~~~~v~v~wkr~~~~~~~~~t~~~~~~--~~~v~w~e~~~~~~tl~~~~-k~~~~~~K~~~~ 80 (143)
T PF10358_consen 4 AVKFQFDLTIHELENLPSSNGKVFVKWKRGDKSKGSGTTSRANVK--NGKVQWNEEFSFPCTLYRDK-KSKEFQPKELKF 80 (143)
T ss_pred eeeEEEEEEEEEeECcCCCCCEEEEEEEECCCCccceeeeeeecc--ccEEEEeeEEEEEEEEEEcC-CCCcEeeEEEEE
Confidence 457999999999999999545589888776655223344544322 34678986655555543320 112368888999
Q ss_pred EEeec
Q psy7271 236 QVWCS 240 (305)
Q Consensus 236 EVwG~ 240 (305)
.|+-.
T Consensus 81 ~v~~~ 85 (143)
T PF10358_consen 81 SVFEV 85 (143)
T ss_pred EEEEe
Confidence 99987
No 98
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=73.83 E-value=4.6 Score=32.26 Aligned_cols=42 Identities=21% Similarity=0.196 Sum_probs=31.4
Q ss_pred eEEEEeeeEeecccccccCcceeeeEEcCCCCeeEEEEEEEE
Q psy7271 37 FRLVGRAFVYLSNLMYPIPLIQKVAIVNEKGDVKGHLKIAVQ 78 (305)
Q Consensus 37 ~~lIGrA~VyL~nL~y~V~l~~~V~Ivs~~Gev~G~L~V~V~ 78 (305)
..+||.+.+-|..|+-.-........+..+|...|.|+|.++
T Consensus 80 d~~iG~~~~~l~~l~~~~~~~~~~~~~~~~~k~~G~i~~~l~ 121 (124)
T cd04044 80 DKLIGTAEFDLSSLLQNPEQENLTKNLLRNGKPVGELNYDLR 121 (124)
T ss_pred CceeEEEEEEHHHhccCccccCcchhhhcCCccceEEEEEEE
Confidence 468999999999988765554333334568888899999886
No 99
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=73.78 E-value=18 Score=29.32 Aligned_cols=67 Identities=13% Similarity=0.097 Sum_probs=44.6
Q ss_pred EEEEEeeccCCCcc----cCceEEEEEeCCCCccceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcEEEE
Q psy7271 161 FRITVLQAVGISTE----YSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQIYQ 236 (305)
Q Consensus 161 FrVtIlqAsGLp~~----ysdVFCQy~F~~~~ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L~fE 236 (305)
..|+|.+|.+|+.. -+|-||....-+ .....|+-++++ ..+.|+.+ |.+.++.. ...|.|+
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~--~~~~kT~v~~~t---~nP~Wne~--f~~~~~~~--------~~~l~v~ 66 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDN--EVIIRTATVWKT---LNPFWGEE--YTVHLPPG--------FHTVSFY 66 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEECC--EeeeeeeeEcCC---CCCcccce--EEEeeCCC--------CCEEEEE
Confidence 36899999999853 457899887743 223567766665 24568776 55555543 1369999
Q ss_pred Eeeccc
Q psy7271 237 VWCSPL 242 (305)
Q Consensus 237 VwG~~~ 242 (305)
||-+..
T Consensus 67 v~d~~~ 72 (121)
T cd04054 67 VLDEDT 72 (121)
T ss_pred EEECCC
Confidence 998753
No 100
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=71.78 E-value=5.4 Score=32.50 Aligned_cols=42 Identities=14% Similarity=0.266 Sum_probs=31.1
Q ss_pred eEEEEeeeEeecccc--cccCcceeeeEEcCCC---CeeEEEEEEEE
Q psy7271 37 FRLVGRAFVYLSNLM--YPIPLIQKVAIVNEKG---DVKGHLKIAVQ 78 (305)
Q Consensus 37 ~~lIGrA~VyL~nL~--y~V~l~~~V~Ivs~~G---ev~G~L~V~V~ 78 (305)
..+||++.+-|+.|. -+.+...-.++.+.+| ...|.|+|.+|
T Consensus 80 d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~~~~~~~Gei~l~~~ 126 (126)
T cd08682 80 DKFLGQVSIPLNDLDEDKGRRRTRWFKLESKPGKDDKERGEIEVDIQ 126 (126)
T ss_pred CceeEEEEEEHHHhhccCCCcccEEEECcCCCCCCccccceEEEEeC
Confidence 457999999999987 4455556667766554 46799999875
No 101
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=70.53 E-value=17 Score=29.27 Aligned_cols=65 Identities=15% Similarity=0.071 Sum_probs=43.4
Q ss_pred eeccCCCcc----cCceEEEEEeCCCC----ccceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcEEEEE
Q psy7271 166 LQAVGISTE----YSDIFCQFNFLHRH----DEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQIYQV 237 (305)
Q Consensus 166 lqAsGLp~~----ysdVFCQy~F~~~~----ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L~fEV 237 (305)
+.|.+|+.. .+|-||+..+.... .+...|+-++++ ..+.|+..-.|.+.. + ....|.|+|
T Consensus 7 i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t---~nP~wne~f~f~~~~--~-------~~~~l~~~V 74 (120)
T cd04048 7 ISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNN---LNPDFVTTFTVDYYF--E-------EVQKLRFEV 74 (120)
T ss_pred EEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCC---CCCCceEEEEEEEEe--E-------eeeEEEEEE
Confidence 577788743 35789999988764 124667777776 355788876665332 2 123699999
Q ss_pred eeccc
Q psy7271 238 WCSPL 242 (305)
Q Consensus 238 wG~~~ 242 (305)
|-+..
T Consensus 75 ~d~d~ 79 (120)
T cd04048 75 YDVDS 79 (120)
T ss_pred EEecC
Confidence 99875
No 102
>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species. Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.
Probab=70.39 E-value=40 Score=29.46 Aligned_cols=74 Identities=16% Similarity=0.229 Sum_probs=47.1
Q ss_pred eEEEEEEeeccCCCcccCceEEEEEeCCCCccc--------eeeCcccCCC--CCCCeeeeEEEEEEEeecCCccccccc
Q psy7271 159 LQFRITVLQAVGISTEYSDIFCQFNFLHRHDEA--------FSTEPVKNTG--KGTPLGFYHIQNLTSATAAHAAPLHPH 228 (305)
Q Consensus 159 ~~FrVtIlqAsGLp~~ysdVFCQy~F~~~~ee~--------fsTePvknt~--~~~~~~F~hvq~~~V~VTee~~fl~yl 228 (305)
+.+.=.|..|.|.+ ..++||+|.+-.-.+.. -.|.-.+... .+....|+|-=+++...+.. + -
T Consensus 2 v~v~G~I~~a~~f~--~~~l~~~y~~~~g~~W~~~~g~~~~G~Tq~~~~~~~~~~~~~~f~~P~d~~~~~~~~--~-g-- 74 (168)
T PF07162_consen 2 VHVIGEIESAEGFE--EDNLYCRYQLVHGPDWKLISGLSLEGQTQISKSSSYGNDDVAVFNHPFDLHFKSTNP--Q-G-- 74 (168)
T ss_pred EEEEEEEEEEECCC--CCCEEEEEEEEeCCCeEECCCCcceEEcceeecCcccCCCceEEeccEEEEEEeCCC--C-C--
Confidence 45566799999875 45799999987644422 2222221111 13456799987777766665 3 2
Q ss_pred cCCcEEEEEeec
Q psy7271 229 QSTSQIYQVWCS 240 (305)
Q Consensus 229 ~~~~L~fEVwG~ 240 (305)
=.-|.|+|||.
T Consensus 75 -wP~L~l~V~~~ 85 (168)
T PF07162_consen 75 -WPQLVLQVYSL 85 (168)
T ss_pred -CceEEEEEEEE
Confidence 34699999994
No 103
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=69.14 E-value=25 Score=39.96 Aligned_cols=65 Identities=18% Similarity=0.217 Sum_probs=44.0
Q ss_pred EEEEEeeccCCCc----ccCceEEEEEeCCCCccceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcEEEE
Q psy7271 161 FRITVLQAVGIST----EYSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQIYQ 236 (305)
Q Consensus 161 FrVtIlqAsGLp~----~ysdVFCQy~F~~~~ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L~fE 236 (305)
..|.+..|.||+. .|+|-||.| |++..+ +|.|.++|.+. ++.|+-...+. |.-. .+..|+|.
T Consensus 1042 l~I~~~~~~nl~~~d~ng~sDpfv~~-~ln~k~-vyktkv~Kktl---NPvwNEe~~i~--v~~r-------~~D~~~i~ 1107 (1227)
T COG5038 1042 LTIMLRSGENLPSSDENGYSDPFVKL-FLNEKS-VYKTKVVKKTL---NPVWNEEFTIE--VLNR-------VKDVLTIN 1107 (1227)
T ss_pred EEEEEeccCCCcccccCCCCCceEEE-Eeccee-cccccchhccC---CCCccccceEe--eecc-------ccceEEEE
Confidence 3578889999995 399999999 555444 89999998773 45587765444 4333 23456666
Q ss_pred Eee
Q psy7271 237 VWC 239 (305)
Q Consensus 237 VwG 239 (305)
|+-
T Consensus 1108 v~D 1110 (1227)
T COG5038 1108 VND 1110 (1227)
T ss_pred Eee
Confidence 654
No 104
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=68.59 E-value=11 Score=30.03 Aligned_cols=40 Identities=20% Similarity=0.196 Sum_probs=31.1
Q ss_pred EEEEeeeEeecccccccCcceeeeEEcCCCCeeEEEEEEEE
Q psy7271 38 RLVGRAFVYLSNLMYPIPLIQKVAIVNEKGDVKGHLKIAVQ 78 (305)
Q Consensus 38 ~lIGrA~VyL~nL~y~V~l~~~V~Ivs~~Gev~G~L~V~V~ 78 (305)
.+||++.+-|..|+..-...+-.++.. +|..+|.|+++++
T Consensus 78 ~~iG~~~~~l~~~~~~~~~~~w~~L~~-~~~~~G~i~l~l~ 117 (118)
T cd08681 78 DLIGDTEVDLSPALKEGEFDDWYELTL-KGRYAGEVYLELT 117 (118)
T ss_pred cceEEEEEecHHHhhcCCCCCcEEecc-CCcEeeEEEEEEE
Confidence 579999999999877666666677654 6778899988874
No 105
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=67.43 E-value=8.4 Score=33.72 Aligned_cols=43 Identities=23% Similarity=0.366 Sum_probs=38.4
Q ss_pred eEEEEeeeEeecccccccCcceeeeEEcCCCCeeEEEEEEEEE
Q psy7271 37 FRLVGRAFVYLSNLMYPIPLIQKVAIVNEKGDVKGHLKIAVQI 79 (305)
Q Consensus 37 ~~lIGrA~VyL~nL~y~V~l~~~V~Ivs~~Gev~G~L~V~V~p 79 (305)
..+||+|.+-|+.|.-.....+.+++.+.+-.+-|+|+|.|.=
T Consensus 94 D~~iG~~~i~L~~l~~~~~~~~~~~L~~~~k~~Gg~l~v~ir~ 136 (155)
T cd08690 94 DKLLGTAQVKLEPLETKCEIHESVDLMDGRKATGGKLEVKVRL 136 (155)
T ss_pred CCeeEEEEEEcccccccCcceEEEEhhhCCCCcCCEEEEEEEe
Confidence 4689999999999998888999999998887888999999863
No 106
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=65.79 E-value=15 Score=29.77 Aligned_cols=44 Identities=23% Similarity=0.277 Sum_probs=33.2
Q ss_pred eEEEEeeeEeecccccccCcceeeeEEcCCCCe-eEEEEEEEEEe
Q psy7271 37 FRLVGRAFVYLSNLMYPIPLIQKVAIVNEKGDV-KGHLKIAVQIV 80 (305)
Q Consensus 37 ~~lIGrA~VyL~nL~y~V~l~~~V~Ivs~~Gev-~G~L~V~V~p~ 80 (305)
..+||.+.+.|+.|.=.-......++.+.+|.. .|.|++.+.=.
T Consensus 72 d~~iG~~~~~l~~l~~~~~~~~~~~L~~~~~~~~~~~l~l~~~~~ 116 (127)
T cd08373 72 NRLIGSATVSLQDLVSEGLLEVTEPLLDSNGRPTGATISLEVSYQ 116 (127)
T ss_pred CceEEEEEEEhhHcccCCceEEEEeCcCCCCCcccEEEEEEEEEe
Confidence 467999999999988666666778888777763 68887776643
No 107
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=61.66 E-value=17 Score=28.80 Aligned_cols=41 Identities=12% Similarity=0.184 Sum_probs=29.4
Q ss_pred ceEEEEeeeEeecccccccCcceeeeEEcC--CCCeeEEEEEEEE
Q psy7271 36 WFRLVGRAFVYLSNLMYPIPLIQKVAIVNE--KGDVKGHLKIAVQ 78 (305)
Q Consensus 36 ~~~lIGrA~VyL~nL~y~V~l~~~V~Ivs~--~Gev~G~L~V~V~ 78 (305)
...+||++.+-|..|.-..+ .-.++.+. ++.++|.|.++++
T Consensus 75 ~~~~iG~~~~~l~~~~~~~~--~~~~l~~~~~~~~~~G~i~l~~~ 117 (119)
T cd08377 75 KPEFLGKVAIPLLSIKNGER--KWYALKDKKLRTRAKGSILLEMD 117 (119)
T ss_pred CCceeeEEEEEHHHCCCCCc--eEEECcccCCCCceeeEEEEEEE
Confidence 34689999999998876654 34455544 4568899988875
No 108
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=60.74 E-value=19 Score=29.26 Aligned_cols=45 Identities=16% Similarity=0.187 Sum_probs=32.9
Q ss_pred eEEEEeeeEeecccccccCcceeeeEEcC---CCCeeEEEEEEEEEec
Q psy7271 37 FRLVGRAFVYLSNLMYPIPLIQKVAIVNE---KGDVKGHLKIAVQIVT 81 (305)
Q Consensus 37 ~~lIGrA~VyL~nL~y~V~l~~~V~Ivs~---~Gev~G~L~V~V~p~~ 81 (305)
..+||.+.+-|..|.-.-..+...++... .+.+.|.|+++++=..
T Consensus 74 ~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~l~l~~~~~~ 121 (126)
T cd08678 74 SKFLGLAIVPFDELRKNPSGRQIFPLQGRPYEGDSVSGSITVEFLFME 121 (126)
T ss_pred CceEEEEEEeHHHhccCCceeEEEEecCCCCCCCCcceEEEEEEEEec
Confidence 46889999999888866555666777654 3457899988887553
No 109
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=59.83 E-value=68 Score=27.31 Aligned_cols=65 Identities=8% Similarity=0.022 Sum_probs=42.9
Q ss_pred EEEEEEeeccCCCcc-cCceEEEEEeCCCCccceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcEEEEEe
Q psy7271 160 QFRITVLQAVGISTE-YSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQIYQVW 238 (305)
Q Consensus 160 ~FrVtIlqAsGLp~~-ysdVFCQy~F~~~~ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L~fEVw 238 (305)
...|+|.+|.+|+.. -.+-||.-++-++ ...|.-++++ ++.|+-+-.|.+ .+ .++. |.||||
T Consensus 3 ~L~V~Vv~Ar~L~~~~~~dPYV~Ik~g~~---k~kT~v~~~~----nP~WnE~F~F~~--~~-------~~~~-L~v~V~ 65 (127)
T cd08394 3 LLCVLVKKAKLDGAPDKFNTYVTLKVQNV---KSTTIAVRGS----QPCWEQDFMFEI--NR-------LDLG-LVIELW 65 (127)
T ss_pred eEEEEEEEeeCCCCCCCCCCeEEEEECCE---EeEeeECCCC----CCceeeEEEEEE--cC-------CCCE-EEEEEE
Confidence 357899999999863 3468888888542 2344444432 457877766654 22 2333 999999
Q ss_pred ecc
Q psy7271 239 CSP 241 (305)
Q Consensus 239 G~~ 241 (305)
-+.
T Consensus 66 dkd 68 (127)
T cd08394 66 NKG 68 (127)
T ss_pred eCC
Confidence 986
No 110
>PF09308 LuxQ-periplasm: LuxQ, periplasmic; InterPro: IPR015387 This entry represents the periplasmic sensor domain of the prokaryotic protein LuxQ, that assumes a structure consisting of two tandem Per/ARNT/Simple-minded (PAS) folds []. ; GO: 0004673 protein histidine kinase activity, 0016791 phosphatase activity; PDB: 2HJ9_C 2HJE_A 1ZHH_B 3C30_A 3C38_A.
Probab=56.77 E-value=13 Score=35.16 Aligned_cols=25 Identities=32% Similarity=0.614 Sum_probs=20.3
Q ss_pred CcceeeeEEc-CCCCeeEEEEEEEEE
Q psy7271 55 PLIQKVAIVN-EKGDVKGHLKIAVQI 79 (305)
Q Consensus 55 ~l~~~V~Ivs-~~Gev~G~L~V~V~p 79 (305)
=|..++||++ ..|||.|+|-+.|.=
T Consensus 127 lLvRR~pIi~~~tGEVlG~Ly~gvVL 152 (238)
T PF09308_consen 127 LLVRRTPIIDPKTGEVLGYLYIGVVL 152 (238)
T ss_dssp EEEEEEEEE-TTTSBEEEEEEEEEE-
T ss_pred EEEeecceeeCCCCeEEEEEEEEEEE
Confidence 3667899999 889999999999864
No 111
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=53.33 E-value=22 Score=29.34 Aligned_cols=42 Identities=17% Similarity=0.240 Sum_probs=31.9
Q ss_pred eEEEEeeeEeecccccccC--cceeeeEEcCCCCeeEEEEEEEE
Q psy7271 37 FRLVGRAFVYLSNLMYPIP--LIQKVAIVNEKGDVKGHLKIAVQ 78 (305)
Q Consensus 37 ~~lIGrA~VyL~nL~y~V~--l~~~V~Ivs~~Gev~G~L~V~V~ 78 (305)
+.+||+|.+-|.-|+-... +-..+.+++-+|+.-|.|++.+.
T Consensus 60 ~~tla~~~i~l~~ll~~~~~~i~~~~~l~g~~~~~~g~l~y~~r 103 (107)
T PF11618_consen 60 FETLAAGQISLRPLLESNGERIHGSATLVGVSGEDFGTLEYWIR 103 (107)
T ss_dssp EEEEEEEEE--SHHHH--S--EEEEEEE-BSSS-TSEEEEEEEE
T ss_pred eEEEEEEEeechhhhcCCCceEEEEEEEeccCCCeEEEEEEEEE
Confidence 6789999999999996665 77889999999999999998875
No 112
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=51.17 E-value=35 Score=27.71 Aligned_cols=42 Identities=29% Similarity=0.351 Sum_probs=30.3
Q ss_pred eEEEEeeeEeecccccccCcc------eeeeEE--cCCCCeeEEEEEEEE
Q psy7271 37 FRLVGRAFVYLSNLMYPIPLI------QKVAIV--NEKGDVKGHLKIAVQ 78 (305)
Q Consensus 37 ~~lIGrA~VyL~nL~y~V~l~------~~V~Iv--s~~Gev~G~L~V~V~ 78 (305)
..+||.+.+-|..|.-..+-. ...++- +.+|+.+|.|++++.
T Consensus 82 ~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~G~l~~~~~ 131 (133)
T cd04033 82 DDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKSRVKGHLRLYMA 131 (133)
T ss_pred CCeeEEEEEEHHHCCCcCccccccccchheeeeecCCCCcceeEEEEEEe
Confidence 457999999999999765531 223333 457889999999875
No 113
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=50.62 E-value=51 Score=28.91 Aligned_cols=75 Identities=11% Similarity=0.132 Sum_probs=44.9
Q ss_pred EEEEEEeeccCCCcc-cCceEEEEEeCCCCccceeeCcccCCC-CCCCeeeeEEEEEEEeecCCccccccccCCcEEEEE
Q psy7271 160 QFRITVLQAVGISTE-YSDIFCQFNFLHRHDEAFSTEPVKNTG-KGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQIYQV 237 (305)
Q Consensus 160 ~FrVtIlqAsGLp~~-ysdVFCQy~F~~~~ee~fsTePvknt~-~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L~fEV 237 (305)
.|||+|+.|.+++.. ++++|.+-..+|..+. .+ .|+.-+- ......|+--=+|.|.+.+= =.+..|+|.|
T Consensus 9 ~~~v~i~~~~~~~~~~~~~l~V~v~l~~g~~~-L~-~pv~T~~v~~~~~~WnEwL~fpI~i~dL------Pr~ArL~iti 80 (158)
T cd08398 9 NLRIKILCATYVNVNDIDKIYVRTGIYHGGEP-LC-DNVNTQRVPCSNPRWNEWLDYDIYIPDL------PRSARLCLSI 80 (158)
T ss_pred CeEEEEEeeccCCCCCcCeEEEEEEEEECCEE-cc-CeeEecccCCCCCccceeEEcccchhcC------ChhheEEEEE
Confidence 478999999999855 6679999888886553 21 2321110 00123466443333333332 2456799999
Q ss_pred eeccc
Q psy7271 238 WCSPL 242 (305)
Q Consensus 238 wG~~~ 242 (305)
|+...
T Consensus 81 ~~~~~ 85 (158)
T cd08398 81 CSVKG 85 (158)
T ss_pred EEEec
Confidence 99753
No 114
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=49.92 E-value=33 Score=27.57 Aligned_cols=41 Identities=17% Similarity=0.238 Sum_probs=25.6
Q ss_pred eEEEEeeeEeecccccccCcceeeeEEc------CCCCeeEEEEEEE
Q psy7271 37 FRLVGRAFVYLSNLMYPIPLIQKVAIVN------EKGDVKGHLKIAV 77 (305)
Q Consensus 37 ~~lIGrA~VyL~nL~y~V~l~~~V~Ivs------~~Gev~G~L~V~V 77 (305)
..+||.+.+-|..|.-.-..+.-..+.. .+|+..|.|+|.|
T Consensus 76 ~~~iG~~~~~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~~~~ 122 (123)
T cd04025 76 NDFLGKVVFSIQTLQQAKQEEGWFRLLPDPRAEEESGGNLGSLRLKV 122 (123)
T ss_pred CcEeEEEEEEHHHcccCCCCCCEEECCCCCCCCccccCceEEEEEEe
Confidence 4578888888887753322232233333 4777788888876
No 115
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=48.82 E-value=36 Score=27.85 Aligned_cols=39 Identities=21% Similarity=0.159 Sum_probs=18.8
Q ss_pred EEEeeeEeecccccccCcceeeeEEcCC---CCeeEEEEEEE
Q psy7271 39 LVGRAFVYLSNLMYPIPLIQKVAIVNEK---GDVKGHLKIAV 77 (305)
Q Consensus 39 lIGrA~VyL~nL~y~V~l~~~V~Ivs~~---Gev~G~L~V~V 77 (305)
.||.+.+-|.++.-+-..+.-.++...+ +...|.|++.+
T Consensus 79 ~iG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~~~~G~i~l~l 120 (126)
T cd08400 79 EIAEVTVQLSKLQNGQETDEWYPLSSASPLKGGEWGSLRIRA 120 (126)
T ss_pred eEEEEEEEHhHccCCCcccEeEEcccCCCCCCCcCcEEEEEE
Confidence 4555555555555444444444444432 23335555544
No 116
>PLN03008 Phospholipase D delta
Probab=45.70 E-value=37 Score=37.61 Aligned_cols=56 Identities=7% Similarity=0.132 Sum_probs=44.9
Q ss_pred EEEEeeeEeecccccccCcceeeeEEcCCCCee---EEEEEEEEEecCCCcCccccccc
Q psy7271 38 RLVGRAFVYLSNLMYPIPLIQKVAIVNEKGDVK---GHLKIAVQIVTDEESTDLTGTVK 93 (305)
Q Consensus 38 ~lIGrA~VyL~nL~y~V~l~~~V~Ivs~~Gev~---G~L~V~V~p~~~~~~~~~~~~v~ 93 (305)
-+||+|.|-|+.|.-+...+.-++|++..|.-. |.|+|++|=..-...+.|..||.
T Consensus 132 D~IG~a~IPL~~L~~Ge~vd~Wl~Ll~~~~kp~k~~~kl~v~lqf~pv~~~~~~~~gv~ 190 (868)
T PLN03008 132 QIIGTAKIPVRDIASGERISGWFPVLGASGKPPKAETAIFIDMKFTPFDQIHSYRCGIA 190 (868)
T ss_pred ceeEEEEEEHHHcCCCCceEEEEEccccCCCCCCCCcEEEEEEEEEEcccccccccccc
Confidence 489999999999999999999999999888654 68999977665455555555553
No 117
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=45.05 E-value=63 Score=28.58 Aligned_cols=75 Identities=9% Similarity=0.138 Sum_probs=45.8
Q ss_pred EEEEEEeeccCCCc--ccCceEEEEEeCCCCccceeeCcccCCCC--CCCeeeeEEEEEEEeecCCccccccccCCcEEE
Q psy7271 160 QFRITVLQAVGIST--EYSDIFCQFNFLHRHDEAFSTEPVKNTGK--GTPLGFYHIQNLTSATAAHAAPLHPHQSTSQIY 235 (305)
Q Consensus 160 ~FrVtIlqAsGLp~--~ysdVFCQy~F~~~~ee~fsTePvknt~~--~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L~f 235 (305)
.|||+|..|.+|+. ...++|.+...+|..+. . +.|+.-.-. .....|+-.=+|.|.+.+= =.+.-|.|
T Consensus 9 ~f~i~i~~~~~~~~~~~~~~l~V~~~lyhG~~~-L-~~p~~T~~~~~~~~~~Wnewl~F~I~i~dL------Pr~ArLci 80 (173)
T cd08693 9 KFSITLHKISNLNAAERTMKVGVQAGLFHGGES-L-CKTVKTSEVSGKNDPVWNETLEFDINVCDL------PRMARLCF 80 (173)
T ss_pred CEEEEEEEeccCccCCCCceEEEEEEEEECCEE-c-cCceEccccCCCCccccceeEEcccchhcC------ChhHeEEE
Confidence 58999999999996 34569999998886552 2 233321100 1234566443333333332 24567999
Q ss_pred EEeeccc
Q psy7271 236 QVWCSPL 242 (305)
Q Consensus 236 EVwG~~~ 242 (305)
.||+...
T Consensus 81 ti~~~~~ 87 (173)
T cd08693 81 AIYEVSK 87 (173)
T ss_pred EEEEecc
Confidence 9999754
No 118
>KOG4027|consensus
Probab=44.45 E-value=86 Score=28.25 Aligned_cols=64 Identities=11% Similarity=0.094 Sum_probs=34.9
Q ss_pred cccCceEEEEEeCCCCccceeeCcccCCCC--------CCCeeeeEEEEEEEeecCCccccccccCCcEEEEEeeccc
Q psy7271 173 TEYSDIFCQFNFLHRHDEAFSTEPVKNTGK--------GTPLGFYHIQNLTSATAAHAAPLHPHQSTSQIYQVWCSPL 242 (305)
Q Consensus 173 ~~ysdVFCQy~F~~~~ee~fsTePvknt~~--------~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L~fEVwG~~~ 242 (305)
++++||||+|.|-.-.|...+.-|...-.. +.++.|+.--.++.+-|.- .-|= .|++.|||..-
T Consensus 23 Pe~~dv~~ky~~Vag~DW~~~~Gpqegvsq~s~~~r~~~~~iv~n~Pievt~KstsP---ygWP---qivl~vfg~d~ 94 (187)
T KOG4027|consen 23 PEESDVCVKYSTVAGGDWKIINGPQEGVSQSSFSFRGADNQIVINLPIEVTLKSTSP---YGWP---QIVLNVFGKDH 94 (187)
T ss_pred CCCCceEEEEEEEecCCceeccCcccchhhheeccccCCCceEEecceEEEeccCCC---CCCc---eEEEEEecCCc
Confidence 458999999999888776655443322211 1233333322222222332 2333 39999999643
No 119
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=43.21 E-value=32 Score=27.65 Aligned_cols=39 Identities=21% Similarity=0.272 Sum_probs=29.9
Q ss_pred eEEEEeeeEeecccccccCc-----ceeeeEEcCCCCeeEEEEE
Q psy7271 37 FRLVGRAFVYLSNLMYPIPL-----IQKVAIVNEKGDVKGHLKI 75 (305)
Q Consensus 37 ~~lIGrA~VyL~nL~y~V~l-----~~~V~Ivs~~Gev~G~L~V 75 (305)
..+||.+.+.|..|+-.-+. ....++....|.-+|.|++
T Consensus 82 ~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~g~~~G~~~~ 125 (125)
T cd04051 82 DKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSGKPQGVLNF 125 (125)
T ss_pred CCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCCCCcCeEEeC
Confidence 35789999999998876654 3457888888888888863
No 120
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=41.74 E-value=59 Score=25.89 Aligned_cols=39 Identities=21% Similarity=0.339 Sum_probs=29.3
Q ss_pred eEEEEeeeEeecccccccCcceeeeEEcCCCC--eeEEEEEEEE
Q psy7271 37 FRLVGRAFVYLSNLMYPIPLIQKVAIVNEKGD--VKGHLKIAVQ 78 (305)
Q Consensus 37 ~~lIGrA~VyL~nL~y~V~l~~~V~Ivs~~Ge--v~G~L~V~V~ 78 (305)
..+||.+.+-|..|.-. .+.+++.+.+|. ..|+|.|.++
T Consensus 86 ~~~iG~~~~~l~~l~~g---~~~~~l~~~~~~~~~~~~l~v~~~ 126 (128)
T cd00275 86 DDFLGQACLPLDSLRQG---YRHVPLLDSKGEPLELSTLFVHID 126 (128)
T ss_pred CcEeEEEEEEhHHhcCc---eEEEEecCCCCCCCcceeEEEEEE
Confidence 35799999999988432 356899988885 5688887764
No 121
>KOG1028|consensus
Probab=41.61 E-value=71 Score=32.28 Aligned_cols=75 Identities=15% Similarity=0.094 Sum_probs=54.9
Q ss_pred eeEEEEEEeeccCCCcc----cCceEEEEEeCCCCccceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcE
Q psy7271 158 ELQFRITVLQAVGISTE----YSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQ 233 (305)
Q Consensus 158 ~~~FrVtIlqAsGLp~~----ysdVFCQy~F~~~~ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L 233 (305)
.....|+|+||.+||+. .+|-||+--.+-+...-+.|.-.++|. ++.|+-. |...|..+ . +++..|
T Consensus 166 ~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tl---nP~fnEt--f~f~v~~~--~---l~~~~L 235 (421)
T KOG1028|consen 166 LNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTL---NPVFNET--FRFEVPYE--E---LSNRVL 235 (421)
T ss_pred CCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCc---CCccccc--eEeecCHH--H---hccCEE
Confidence 34567899999999964 478999998888776678888777773 3456655 44445444 2 588899
Q ss_pred EEEEeeccc
Q psy7271 234 IYQVWCSPL 242 (305)
Q Consensus 234 ~fEVwG~~~ 242 (305)
.|.||...+
T Consensus 236 ~l~V~~~dr 244 (421)
T KOG1028|consen 236 HLSVYDFDR 244 (421)
T ss_pred EEEEEecCC
Confidence 999999765
No 122
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=41.15 E-value=47 Score=28.77 Aligned_cols=33 Identities=12% Similarity=0.141 Sum_probs=27.6
Q ss_pred eEEEEeeeEeecccccccCcceeeeEEcCCCCe
Q psy7271 37 FRLVGRAFVYLSNLMYPIPLIQKVAIVNEKGDV 69 (305)
Q Consensus 37 ~~lIGrA~VyL~nL~y~V~l~~~V~Ivs~~Gev 69 (305)
..+||++.|-++.|.-.-..+.-.||.+.+|.-
T Consensus 86 ~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~ 118 (146)
T cd04013 86 SQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGNG 118 (146)
T ss_pred CcEEEEEEEEHHHhcCCCcccEEEEeecCCCCC
Confidence 468899999999998888888888998888774
No 123
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=40.85 E-value=39 Score=27.01 Aligned_cols=38 Identities=16% Similarity=0.193 Sum_probs=27.8
Q ss_pred eEEEEeeeEeecccccccCcceeeeEEcCCCCeeEEEEEEE
Q psy7271 37 FRLVGRAFVYLSNLMYPIPLIQKVAIVNEKGDVKGHLKIAV 77 (305)
Q Consensus 37 ~~lIGrA~VyL~nL~y~V~l~~~V~Ivs~~Gev~G~L~V~V 77 (305)
..+||++.+-|..|.-+.+.....++-.+ | +|.|+|++
T Consensus 78 ~~~iG~~~~~l~~l~~g~~~~~~~~L~~~-~--~g~l~~~~ 115 (119)
T cd04036 78 DDHLGTVLFDVSKLKLGEKVRVTFSLNPQ-G--KEELEVEF 115 (119)
T ss_pred CcccEEEEEEHHHCCCCCcEEEEEECCCC-C--CceEEEEE
Confidence 45799999999998888777777887543 3 56666654
No 124
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=40.69 E-value=42 Score=28.88 Aligned_cols=40 Identities=23% Similarity=0.530 Sum_probs=23.9
Q ss_pred EEEeeeEeecccccccCcceeeeEEcCCCCe---eEEEEEEEE
Q psy7271 39 LVGRAFVYLSNLMYPIPLIQKVAIVNEKGDV---KGHLKIAVQ 78 (305)
Q Consensus 39 lIGrA~VyL~nL~y~V~l~~~V~Ivs~~Gev---~G~L~V~V~ 78 (305)
+||++.+-|+.|.-.-+.+.-+++.+..|.- .|.|+|.++
T Consensus 114 ~IG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~~~l~v~~~ 156 (158)
T cd04015 114 LIGRAYIPVEDLLSGEPVEGWLPILDSNGKPPKPGAKIRVSLQ 156 (158)
T ss_pred EEEEEEEEhHHccCCCCcceEEECcCCCCCCCCCCCEEEEEEE
Confidence 5677777777766665666666666653331 256666554
No 125
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=39.86 E-value=77 Score=38.54 Aligned_cols=69 Identities=7% Similarity=0.121 Sum_probs=50.6
Q ss_pred EEEEEEeeccCCCccc--CceEEEEEeCCCCccceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcEEEEE
Q psy7271 160 QFRITVLQAVGISTEY--SDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQIYQV 237 (305)
Q Consensus 160 ~FrVtIlqAsGLp~~y--sdVFCQy~F~~~~ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L~fEV 237 (305)
..+|+|++|.+|...+ +|-||..+|-++.. ..|.-+|++ .++.|+-.=++++..+. .+..|.|||
T Consensus 1981 ~L~V~V~~a~nl~~~~~~sdPyv~l~~g~~~~--~kTkvvk~~---~nP~Wne~f~~~~~~p~--------~~~~l~iev 2047 (2102)
T PLN03200 1981 SLTVTIKRGNNLKQSMGNTNAFCKLTLGNGPP--RQTKVVSHS---SSPEWKEGFTWAFDSPP--------KGQKLHISC 2047 (2102)
T ss_pred ceEEEEeeccccccccCCCCCeEEEEECCCCc--ccccccCCC---CCCCcccceeeeecCCC--------CCCceEEEE
Confidence 4689999999999654 36999999997544 357777765 35678877666555443 345699999
Q ss_pred eecc
Q psy7271 238 WCSP 241 (305)
Q Consensus 238 wG~~ 241 (305)
|-+.
T Consensus 2048 ~d~d 2051 (2102)
T PLN03200 2048 KSKN 2051 (2102)
T ss_pred EecC
Confidence 9985
No 126
>PF05688 DUF824: Salmonella repeat of unknown function (DUF824); InterPro: IPR008542 This family consists of a series of repeated sequences (of around 180 residues) which are found in Salmonella typhimurium, Salmonella typhi and Escherichia coli. These repeats are almost always found with this entry. The repeats are associated with RatA and RatB, the coding sequences of which are found in the pathogeneicity island of Salmonella. The sequences may be determinants of pathogenicity [, ].
Probab=38.70 E-value=37 Score=24.25 Aligned_cols=24 Identities=21% Similarity=0.277 Sum_probs=20.9
Q ss_pred CCCCeeEEEEEEeeccCCCcccCc
Q psy7271 154 SPGTELQFRITVLQAVGISTEYSD 177 (305)
Q Consensus 154 ~lG~~~~FrVtIlqAsGLp~~ysd 177 (305)
+.|..+..+|+++.|.|.|.-+..
T Consensus 10 K~Ge~I~ltVt~kda~G~pv~n~~ 33 (47)
T PF05688_consen 10 KVGETIPLTVTVKDANGNPVPNAP 33 (47)
T ss_pred ecCCeEEEEEEEECCCCCCcCCce
Confidence 699999999999999999875543
No 127
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=38.05 E-value=77 Score=25.66 Aligned_cols=42 Identities=14% Similarity=0.268 Sum_probs=27.4
Q ss_pred eEEEEeeeEeecccc-cccCcceeeeEEcC--CCCeeEEEEEEEE
Q psy7271 37 FRLVGRAFVYLSNLM-YPIPLIQKVAIVNE--KGDVKGHLKIAVQ 78 (305)
Q Consensus 37 ~~lIGrA~VyL~nL~-y~V~l~~~V~Ivs~--~Gev~G~L~V~V~ 78 (305)
..+||.+.+-|+.|. -.-....-.++-.. .+.++|.|++.++
T Consensus 80 d~~lG~v~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~ 124 (127)
T cd04022 80 RSFLGRVRISGTSFVPPSEAVVQRYPLEKRGLFSRVRGEIGLKVY 124 (127)
T ss_pred CCeeeEEEEcHHHcCCCCCccceEeEeeeCCCCCCccEEEEEEEE
Confidence 467899999998887 23333333455432 3458888888876
No 128
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=38.01 E-value=68 Score=26.59 Aligned_cols=7 Identities=14% Similarity=0.691 Sum_probs=3.8
Q ss_pred CCCCCCC
Q psy7271 27 GDPFYDR 33 (305)
Q Consensus 27 ~DPFyd~ 33 (305)
.+|.|+.
T Consensus 45 ~nP~WNe 51 (121)
T cd04016 45 KNPRWNK 51 (121)
T ss_pred CCCccCe
Confidence 4666553
No 129
>KOG3837|consensus
Probab=37.32 E-value=27 Score=35.75 Aligned_cols=42 Identities=19% Similarity=0.275 Sum_probs=39.4
Q ss_pred eEEEEeeeEeecccccccCcceeeeEEcCCCCeeEEEEEEEE
Q psy7271 37 FRLVGRAFVYLSNLMYPIPLIQKVAIVNEKGDVKGHLKIAVQ 78 (305)
Q Consensus 37 ~~lIGrA~VyL~nL~y~V~l~~~V~Ivs~~Gev~G~L~V~V~ 78 (305)
..|+|.+|+-|+-|-..+.+..-+++.+-+-.|-|+|.|.|.
T Consensus 460 dkl~gt~nikle~Len~cei~e~~~l~DGRK~vGGkLevKvR 501 (523)
T KOG3837|consen 460 DKLTGTGNIKLEILENMCEICEYLPLKDGRKAVGGKLEVKVR 501 (523)
T ss_pred cceeceeeeeehhhhcccchhhceeccccccccCCeeEEEEE
Confidence 469999999999999999999999999999999999999884
No 130
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=36.36 E-value=99 Score=25.16 Aligned_cols=40 Identities=10% Similarity=0.214 Sum_probs=25.7
Q ss_pred EEEEeeeEeecccccccCcceeeeEE--cCCCCeeEEEEEEE
Q psy7271 38 RLVGRAFVYLSNLMYPIPLIQKVAIV--NEKGDVKGHLKIAV 77 (305)
Q Consensus 38 ~lIGrA~VyL~nL~y~V~l~~~V~Iv--s~~Gev~G~L~V~V 77 (305)
.+||++.+-|+.|.-.-..+.-.++- ...|...|.|++++
T Consensus 78 ~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~G~i~l~~ 119 (121)
T cd08401 78 SVIGKVAIKKEDLHKYYGKDTWFPLQPVDADSEVQGKVHLEL 119 (121)
T ss_pred ceEEEEEEEHHHccCCCCcEeeEEEEccCCCCcccEEEEEEE
Confidence 46888888888886544444334443 35566678877765
No 131
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=35.30 E-value=68 Score=26.11 Aligned_cols=42 Identities=29% Similarity=0.326 Sum_probs=30.1
Q ss_pred eEEEEeeeEeecccccccC-----cceeeeEEcCCC-CeeEEEEEEEE
Q psy7271 37 FRLVGRAFVYLSNLMYPIP-----LIQKVAIVNEKG-DVKGHLKIAVQ 78 (305)
Q Consensus 37 ~~lIGrA~VyL~nL~y~V~-----l~~~V~Ivs~~G-ev~G~L~V~V~ 78 (305)
..+||++.+-|+.|....+ ...-.++.+.+| ..+|.|++.|+
T Consensus 71 ~~~lG~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~~~~~G~i~l~~~ 118 (121)
T cd08378 71 DDFLGGVCFDLSEVPTRVPPDSPLAPQWYRLEDKKGGRVGGELMLAVW 118 (121)
T ss_pred CceeeeEEEEhHhCcCCCCCCCCCCcceEEccCCCCCccceEEEEEEE
Confidence 4679999999999876543 224466766554 67899998875
No 132
>PLN02270 phospholipase D alpha
Probab=35.19 E-value=66 Score=35.46 Aligned_cols=55 Identities=15% Similarity=0.302 Sum_probs=42.3
Q ss_pred EEEEeeeEeecccccccCcceeeeEEcCCCCee-E--EEEEEEEEecCCCcCcccccc
Q psy7271 38 RLVGRAFVYLSNLMYPIPLIQKVAIVNEKGDVK-G--HLKIAVQIVTDEESTDLTGTV 92 (305)
Q Consensus 38 ~lIGrA~VyL~nL~y~V~l~~~V~Ivs~~Gev~-G--~L~V~V~p~~~~~~~~~~~~v 92 (305)
.|||+|.+-.+-|+-+-.++.-+||++.+|+-. | +|+|.+|=..-...+.|..||
T Consensus 103 ~~ig~~~~p~~~~~~g~~i~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~~~~~~~~gv 160 (808)
T PLN02270 103 TLIGRAYIPVEEILDGEEVDRWVEILDNDKNPIHGGSKIHVKLQYFEVTKDRNWGRGI 160 (808)
T ss_pred eEEEEEEEEHHHhcCCCccccEEeccCCCCCcCCCCCEEEEEEEEEEcccCcchhccc
Confidence 489999999999999999999999999998754 3 666666654434445566665
No 133
>PF14827 Cache_3: Sensory domain of two-component sensor kinase; PDB: 1OJG_A 3BY8_A 1P0Z_I 2V9A_A 2J80_B.
Probab=34.96 E-value=41 Score=27.18 Aligned_cols=51 Identities=22% Similarity=0.264 Sum_probs=27.7
Q ss_pred CCCCCCCCCceEEEEeeeEeecccccccCcceeeeEEcCCCCeeEEEEEEE
Q psy7271 27 GDPFYDRFPWFRLVGRAFVYLSNLMYPIPLIQKVAIVNEKGDVKGHLKIAV 77 (305)
Q Consensus 27 ~DPFyd~~~~~~lIGrA~VyL~nL~y~V~l~~~V~Ivs~~Gev~G~L~V~V 77 (305)
+++|-+...+..|=|...+....---.--+.-.+||.|.+|++.|.+.|.+
T Consensus 61 G~~~~~~~~~~aL~G~~~~~~~~~~~~~~~~~~~PV~d~~g~viG~V~VG~ 111 (116)
T PF14827_consen 61 GDRYSDEDVRKALQGKSYTSVSQGTGGPSLRAFAPVYDSDGKVIGVVSVGV 111 (116)
T ss_dssp TSB-SSCCHCHHCCT--EEEEEECTTCEEEEEEEEEE-TTS-EEEEEEEEE
T ss_pred CCcccCCChhhhhcCCceEEeeecCCceEEEEEEeeECCCCcEEEEEEEEE
Confidence 455554323334445444433222223446677999999999999999876
No 134
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=34.41 E-value=46 Score=22.64 Aligned_cols=18 Identities=28% Similarity=0.673 Sum_probs=15.4
Q ss_pred ceeeeEEcCCCCeeEEEE
Q psy7271 57 IQKVAIVNEKGDVKGHLK 74 (305)
Q Consensus 57 ~~~V~Ivs~~Gev~G~L~ 74 (305)
...+||+|++|++.|.+.
T Consensus 30 ~~~~~V~d~~~~~~G~is 47 (57)
T PF00571_consen 30 ISRLPVVDEDGKLVGIIS 47 (57)
T ss_dssp SSEEEEESTTSBEEEEEE
T ss_pred CcEEEEEecCCEEEEEEE
Confidence 356999999999999875
No 135
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=33.69 E-value=45 Score=26.23 Aligned_cols=37 Identities=22% Similarity=0.259 Sum_probs=24.2
Q ss_pred EEEEeeeEeecccccccCcceeeeEEcCCCCeeEEEE
Q psy7271 38 RLVGRAFVYLSNLMYPIPLIQKVAIVNEKGDVKGHLK 74 (305)
Q Consensus 38 ~lIGrA~VyL~nL~y~V~l~~~V~Ivs~~Gev~G~L~ 74 (305)
.+||.+.+.|.+|.=.-..+..+++....|...|.|-
T Consensus 77 ~~iG~~~~~l~~l~~~~~~~~~~~L~~~g~~~~~~~~ 113 (115)
T cd04040 77 DLLGSAYIDLSDLEPEETTELTLPLDGQGGGKLGAVF 113 (115)
T ss_pred CceEEEEEEHHHcCCCCcEEEEEECcCCCCccCceEE
Confidence 4677777777776655555666777666666556653
No 136
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=30.61 E-value=72 Score=25.08 Aligned_cols=37 Identities=14% Similarity=0.174 Sum_probs=18.1
Q ss_pred EEEEeeeEeecccccccCcceeeeEEcCCCCeeEEEEEEE
Q psy7271 38 RLVGRAFVYLSNLMYPIPLIQKVAIVNEKGDVKGHLKIAV 77 (305)
Q Consensus 38 ~lIGrA~VyL~nL~y~V~l~~~V~Ivs~~Gev~G~L~V~V 77 (305)
.+||++.+-|+.|.-.-..+.-.++.+ ...|.|++++
T Consensus 83 ~~iG~~~i~l~~l~~~~~~~~w~~L~~---~~~G~~~~~~ 119 (121)
T cd08391 83 DFLGRLSIDLGSVEKKGFIDEWLPLED---VKSGRLHLKL 119 (121)
T ss_pred CcEEEEEEEHHHhcccCccceEEECcC---CCCceEEEEE
Confidence 356666666666654433333344432 1334455544
No 137
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=29.19 E-value=1.1e+02 Score=24.72 Aligned_cols=42 Identities=12% Similarity=0.251 Sum_probs=25.1
Q ss_pred eEEEEeeeEeeccccc-ccCcceeeeE--EcCCCCeeEEEEEEEE
Q psy7271 37 FRLVGRAFVYLSNLMY-PIPLIQKVAI--VNEKGDVKGHLKIAVQ 78 (305)
Q Consensus 37 ~~lIGrA~VyL~nL~y-~V~l~~~V~I--vs~~Gev~G~L~V~V~ 78 (305)
..+||++.+-++.+.= +...+.-+++ .+..+.+.|.|++++.
T Consensus 76 d~~iG~~~~~~~~~~~~~~~~~~W~~L~~~~~~~~~~G~i~l~~~ 120 (121)
T cd04054 76 DDVIGKVSLTREVISAHPRGIDGWMNLTEVDPDEEVQGEIHLELS 120 (121)
T ss_pred CCEEEEEEEcHHHhccCCCCCCcEEECeeeCCCCccccEEEEEEE
Confidence 3568888887765542 2224444555 3456667787777653
No 138
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=28.87 E-value=1.7e+02 Score=25.62 Aligned_cols=81 Identities=14% Similarity=0.145 Sum_probs=45.9
Q ss_pred eeEEEEEEeeccCCCccc----CceEEEEEeCCCCccc---eeeCcccCCC-CCCCeeeeEEEEEEEeecCCcccccccc
Q psy7271 158 ELQFRITVLQAVGISTEY----SDIFCQFNFLHRHDEA---FSTEPVKNTG-KGTPLGFYHIQNLTSATAAHAAPLHPHQ 229 (305)
Q Consensus 158 ~~~FrVtIlqAsGLp~~y----sdVFCQy~F~~~~ee~---fsTePvknt~-~~~~~~F~hvq~~~V~VTee~~fl~yl~ 229 (305)
.-.|+|+|..+-++|... .++|.+-..+|..+.. ..|++..... -...+.|+-.=+|.+.+.+ | =.
T Consensus 7 ~~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~----L--Pr 80 (171)
T cd04012 7 TDLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQ----L--PR 80 (171)
T ss_pred cccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhc----C--Ch
Confidence 346788999999999874 5688888777765532 2232211000 0012334433233333222 2 24
Q ss_pred CCcEEEEEeeccccc
Q psy7271 230 STSQIYQVWCSPLAL 244 (305)
Q Consensus 230 ~~~L~fEVwG~~~~~ 244 (305)
+..|+|.+||....+
T Consensus 81 earL~itl~~~~~~~ 95 (171)
T cd04012 81 ESRLVLTLYGTTSSP 95 (171)
T ss_pred hHEEEEEEEEEecCC
Confidence 667999999986543
No 139
>PLN02352 phospholipase D epsilon
Probab=26.80 E-value=82 Score=34.55 Aligned_cols=57 Identities=11% Similarity=0.192 Sum_probs=43.9
Q ss_pred EEEEeeeEeecccccccC-cceeeeEEcCCCCee-E-EEEEEEEEecCCCcCcccccccc
Q psy7271 38 RLVGRAFVYLSNLMYPIP-LIQKVAIVNEKGDVK-G-HLKIAVQIVTDEESTDLTGTVKQ 94 (305)
Q Consensus 38 ~lIGrA~VyL~nL~y~V~-l~~~V~Ivs~~Gev~-G-~L~V~V~p~~~~~~~~~~~~v~q 94 (305)
.+||+|.+-.+-|+-+-. ++.-+||++.+|+-. | +|+|.+|=..-+..+.|..||..
T Consensus 85 ~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~ 144 (758)
T PLN02352 85 SILGRFHIQAHQIVTEASFINGFFPLIMENGKPNPELKLRFMLWFRPAELEPTWCKILEN 144 (758)
T ss_pred eEEEEEEEEHHHhhCCCcccceEEEcccCCCCCCCCCEEEEEEEEEEhhhCcchhhcccC
Confidence 479999999999998855 888999999998755 4 77777776655555566666644
No 140
>PF14924 DUF4497: Protein of unknown function (DUF4497)
Probab=24.94 E-value=1.2e+02 Score=24.81 Aligned_cols=43 Identities=16% Similarity=0.305 Sum_probs=34.2
Q ss_pred ceEEEEeeeEeeccccccc--------------CcceeeeEEcCCCCeeEEEEEEEE
Q psy7271 36 WFRLVGRAFVYLSNLMYPI--------------PLIQKVAIVNEKGDVKGHLKIAVQ 78 (305)
Q Consensus 36 ~~~lIGrA~VyL~nL~y~V--------------~l~~~V~Ivs~~Gev~G~L~V~V~ 78 (305)
...+||.+.+.|..++..+ -+....+|.++.|+..|.+.+.+.
T Consensus 46 ~~~liG~~~i~l~~~~~~i~~~~~~~~~~p~s~~~k~~f~L~~~~~~~~G~I~l~iR 102 (112)
T PF14924_consen 46 PPMLIGSCPISLAEAFNRILKDSAECNGQPSSKTIKGTFPLFDENGNPVGEISLYIR 102 (112)
T ss_pred ccceeeEEEecHHHHHHHHHHHHHhhccCCCchhhcceeEeecCCCceeeeEEEEEE
Confidence 3578999999999987432 244568999999999999988764
No 141
>PF02743 Cache_1: Cache domain; InterPro: IPR004010 Cache is an extracellular domain that is predicted to have a role in small-molecule recognition in a wide range of proteins, including the animal dihydropyridine-sensitive voltage-gated Ca2+ channel; alpha-2delta subunit, and various bacterial chemotaxis receptors. The name Cache comes from CAlcium channels and CHEmotaxis receptors. This domain consists of an N-terminal part with three predicted strands and an alpha-helix, and a C-terminal part with a strand dyad followed by a relatively unstructured region. The N-terminal portion of the (unpermuted) Cache domain contains three predicted strands that could form a sheet analogous to that present in the core of the PAS domain structure. Cache domains are particularly widespread in bacteria, with Vibrio cholerae. The animal calcium channel alpha-2delta subunits might have acquired a part of their extracellular domains from a bacterial source []. The Cache domain appears to have arisen from the GAF-PAS fold despite their divergent functions [].; GO: 0016020 membrane; PDB: 3C8C_A 3LIB_D 3LIA_A 3LI8_A 3LI9_A.
Probab=23.89 E-value=1.5e+02 Score=21.85 Aligned_cols=20 Identities=25% Similarity=0.542 Sum_probs=16.8
Q ss_pred eeeEEcCCCCeeEEEEEEEE
Q psy7271 59 KVAIVNEKGDVKGHLKIAVQ 78 (305)
Q Consensus 59 ~V~Ivs~~Gev~G~L~V~V~ 78 (305)
.+||.+.+|++.|.+-+.+.
T Consensus 18 s~pi~~~~g~~~Gvv~~di~ 37 (81)
T PF02743_consen 18 SVPIYDDDGKIIGVVGIDIS 37 (81)
T ss_dssp EEEEEETTTEEEEEEEEEEE
T ss_pred EEEEECCCCCEEEEEEEEec
Confidence 36999999999999887665
No 142
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=23.46 E-value=1.3e+02 Score=25.71 Aligned_cols=15 Identities=27% Similarity=0.441 Sum_probs=9.4
Q ss_pred EEEEeeeEeeccccc
Q psy7271 38 RLVGRAFVYLSNLMY 52 (305)
Q Consensus 38 ~lIGrA~VyL~nL~y 52 (305)
.+||++.+-|+.|.-
T Consensus 78 d~lG~v~i~L~~l~~ 92 (150)
T cd04019 78 EPLGRAVIPLNDIER 92 (150)
T ss_pred CeEEEEEEEHHHCcc
Confidence 356777776666543
No 143
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=22.70 E-value=1.1e+02 Score=24.76 Aligned_cols=40 Identities=15% Similarity=0.266 Sum_probs=23.7
Q ss_pred EEEEeeeEeecccccccCcceeeeEE----cCCCCeeEEEEEEEEE
Q psy7271 38 RLVGRAFVYLSNLMYPIPLIQKVAIV----NEKGDVKGHLKIAVQI 79 (305)
Q Consensus 38 ~lIGrA~VyL~nL~y~V~l~~~V~Iv----s~~Gev~G~L~V~V~p 79 (305)
.+||.+.+-|..+.-... +.+++. ..+|.+.|.|++.|.-
T Consensus 78 ~~lG~~~~~l~~~~~~~~--~~~~l~~~~~~~~~~~~G~i~~~~~~ 121 (126)
T cd04046 78 EFLGQATLSADPNDSQTL--RTLPLRKRGRDAAGEVPGTISVKVTS 121 (126)
T ss_pred CceEEEEEecccCCCcCc--eEEEcccCCCCCCCCCCCEEEEEEEE
Confidence 467777777765432222 334442 3677777887777654
No 144
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=22.57 E-value=1.8e+02 Score=23.66 Aligned_cols=41 Identities=22% Similarity=0.228 Sum_probs=25.4
Q ss_pred eEEEEeeeEeecccccc--cCcc---eeeeEEcC---CCCeeEEEEEEE
Q psy7271 37 FRLVGRAFVYLSNLMYP--IPLI---QKVAIVNE---KGDVKGHLKIAV 77 (305)
Q Consensus 37 ~~lIGrA~VyL~nL~y~--V~l~---~~V~Ivs~---~Gev~G~L~V~V 77 (305)
..+||++.+-|..|+-. ..+. -.+++... .|...|+|.+++
T Consensus 76 ~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 124 (125)
T cd04021 76 DVLLGEASLDLSDILKNHNGKLENVKLTLNLSSENKGSSVKVGELTVIL 124 (125)
T ss_pred CcEEEEEEEEHHHhHhhcCCCccceEEEEEEEccCCCcceeeeeEEEEe
Confidence 35789999988887732 2222 13444432 456778888875
No 145
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=22.20 E-value=1.4e+02 Score=23.70 Aligned_cols=40 Identities=10% Similarity=0.130 Sum_probs=21.6
Q ss_pred EEEEeeeEeecccccc---cCcceeeeEEcC----CCCeeEEEEEEE
Q psy7271 38 RLVGRAFVYLSNLMYP---IPLIQKVAIVNE----KGDVKGHLKIAV 77 (305)
Q Consensus 38 ~lIGrA~VyL~nL~y~---V~l~~~V~Ivs~----~Gev~G~L~V~V 77 (305)
.+||++.+-|..+.-+ -....-+++-+. ++.+.|.|++.+
T Consensus 80 ~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~~~G~i~l~~ 126 (128)
T cd04024 80 DYLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVVSGEIHLQF 126 (128)
T ss_pred CcceEEEEEHHHhhcccccCccceeEEccCcccCccccccceEEEEE
Confidence 4677888877777621 112222344333 233667777665
No 146
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=22.16 E-value=1.7e+02 Score=22.94 Aligned_cols=37 Identities=19% Similarity=0.231 Sum_probs=24.0
Q ss_pred eEEEEeeeEeecccccccCcceeeeEEcCCCCeeEEEEEEE
Q psy7271 37 FRLVGRAFVYLSNLMYPIPLIQKVAIVNEKGDVKGHLKIAV 77 (305)
Q Consensus 37 ~~lIGrA~VyL~nL~y~V~l~~~V~Ivs~~Gev~G~L~V~V 77 (305)
..+||++.+-|..|.-+-....-+++-.. .|.|++++
T Consensus 76 ~~~iG~~~~~l~~l~~~~~~~~w~~L~~~----~G~~~~~~ 112 (116)
T cd08376 76 DEFIGRCEIDLSALPREQTHSLELELEDG----EGSLLLLL 112 (116)
T ss_pred CCeEEEEEEeHHHCCCCCceEEEEEccCC----CcEEEEEE
Confidence 46788888888887766665555666543 35555554
No 147
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=21.63 E-value=1.2e+02 Score=25.32 Aligned_cols=39 Identities=18% Similarity=0.152 Sum_probs=29.7
Q ss_pred eEEEEeeeEeecccccccCcceeeeEEcCC---CCeeEEEEE
Q psy7271 37 FRLVGRAFVYLSNLMYPIPLIQKVAIVNEK---GDVKGHLKI 75 (305)
Q Consensus 37 ~~lIGrA~VyL~nL~y~V~l~~~V~Ivs~~---Gev~G~L~V 75 (305)
..+||++.+-|+.|..+...++.+|+.+.+ ++..|.|+.
T Consensus 84 dd~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~g~l~~ 125 (126)
T cd08379 84 DVLIGKVRIRLSTLEDDRVYAHSYPLLSLNPSGVKKMGELEC 125 (126)
T ss_pred CceEEEEEEEHHHccCCCEEeeEEEeEeCCCCCccCCcEEEe
Confidence 567899999999998888888888888754 334466653
No 148
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=21.27 E-value=2.7e+02 Score=27.61 Aligned_cols=73 Identities=21% Similarity=0.251 Sum_probs=50.4
Q ss_pred EEEEEeeccCCCcccCc-eEEEEEeCCCCccceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcEEEEEee
Q psy7271 161 FRITVLQAVGISTEYSD-IFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQIYQVWC 239 (305)
Q Consensus 161 FrVtIlqAsGLp~~ysd-VFCQy~F~~~~ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L~fEVwG 239 (305)
+-|+|+++.|.|..=.. +.+.=+|-+ +.+.|+|+..+. .+.|+. ++.=++....+.=+-+|+.+|-+|.|-
T Consensus 2 ivl~i~egr~F~~~~~~~~vv~a~~ng---~~l~TDpv~~~~---~p~f~t--eL~WE~Dr~~l~~~r~~~tPiKl~c~a 73 (340)
T PF12416_consen 2 IVLSILEGRNFPQRPRHPIVVEAKFNG---ESLETDPVPHTE---SPQFNT--ELAWECDRKALKQHRLQRTPIKLQCFA 73 (340)
T ss_pred EEEEEecccCCCCCCCccEEEEEEeCC---ceeeecCCCCCC---Cceeec--ceeeeccHHHHHHhhccCCceEEEEEE
Confidence 46899999999988444 999999987 688999987763 456654 344344444222234677788888776
Q ss_pred cc
Q psy7271 240 SP 241 (305)
Q Consensus 240 ~~ 241 (305)
-.
T Consensus 74 ~~ 75 (340)
T PF12416_consen 74 VD 75 (340)
T ss_pred ec
Confidence 54
No 149
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=21.08 E-value=1.7e+02 Score=23.76 Aligned_cols=15 Identities=13% Similarity=0.326 Sum_probs=9.8
Q ss_pred EEEEeeeEeeccccc
Q psy7271 38 RLVGRAFVYLSNLMY 52 (305)
Q Consensus 38 ~lIGrA~VyL~nL~y 52 (305)
.+||++.+-|..|.-
T Consensus 90 ~~iG~~~i~l~~l~~ 104 (132)
T cd04014 90 DFVANCTISFEDLIQ 104 (132)
T ss_pred ceEEEEEEEhHHhcc
Confidence 456777776666665
No 150
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=20.48 E-value=2.7e+02 Score=23.60 Aligned_cols=75 Identities=13% Similarity=0.245 Sum_probs=42.5
Q ss_pred EEEEEEeeccCCCc---ccCceEEEEEeCCCCccceeeCcccCCCC---CCCeeeeEEEEEEEeecCCccccccccCCcE
Q psy7271 160 QFRITVLQAVGIST---EYSDIFCQFNFLHRHDEAFSTEPVKNTGK---GTPLGFYHIQNLTSATAAHAAPLHPHQSTSQ 233 (305)
Q Consensus 160 ~FrVtIlqAsGLp~---~ysdVFCQy~F~~~~ee~fsTePvknt~~---~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L 233 (305)
.|+|+|..+.+++. ...++|.+...+|..+. . ++++ .|.+ .....|+.-=+|.+.+.+ | =.+..|
T Consensus 9 ~~~i~i~~~~~~~~~~~~~~~l~V~~~l~~g~~~-l-~~~~-~t~~~~~~~~~~Wne~l~F~i~~~~----L--P~~arL 79 (156)
T cd08380 9 NLRIKIHGITNINLLDSEDLKLYVRVQLYHGGEP-L-CPPQ-STKKVPFSTSVTWNEWLTFDILISD----L--PREARL 79 (156)
T ss_pred CeEEEEEeeccccccCCCceeEEEEEEEEECCEE-c-cCce-eccCCcCCCCCcccceeEccchhhc----C--ChhheE
Confidence 56788888888875 35568888888886553 1 1222 1111 123445444333333322 1 245679
Q ss_pred EEEEeecccc
Q psy7271 234 IYQVWCSPLA 243 (305)
Q Consensus 234 ~fEVwG~~~~ 243 (305)
+|.||+....
T Consensus 80 ~itl~~~~~~ 89 (156)
T cd08380 80 CLSIYAVSEP 89 (156)
T ss_pred EEEEEEEecC
Confidence 9999997643
No 151
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=20.45 E-value=1.7e+02 Score=24.35 Aligned_cols=37 Identities=11% Similarity=0.366 Sum_probs=22.2
Q ss_pred EEEEeeeEeeccccc-----ccCcceeeeEEcCCCCeeEEEEEEE
Q psy7271 38 RLVGRAFVYLSNLMY-----PIPLIQKVAIVNEKGDVKGHLKIAV 77 (305)
Q Consensus 38 ~lIGrA~VyL~nL~y-----~V~l~~~V~Ivs~~Gev~G~L~V~V 77 (305)
.+||.+.+-|..|+- .-++..++++ ++.-+|.+++++
T Consensus 92 ~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~---~~~~~g~i~l~~ 133 (136)
T cd08375 92 DFLGRTEIRVADILKETKESKGPITKRLLL---HEVPTGEVVVKL 133 (136)
T ss_pred CeeEEEEEEHHHhccccccCCCcEEEEecc---ccccceeEEEEE
Confidence 578888888887765 3333333333 455556666665
No 152
>COG3940 Predicted beta-xylosidase [General function prediction only]
Probab=20.43 E-value=53 Score=31.15 Aligned_cols=25 Identities=32% Similarity=0.469 Sum_probs=18.7
Q ss_pred cceeecCCCccccceeee-----ec--cccCC
Q psy7271 273 YSCFTREYRGVFDLPLYT-----NK--CPKYD 297 (305)
Q Consensus 273 ~~~~~~~~~~~~d~~~~~-----~~--~~~~~ 297 (305)
-+.+|....||||+|||- +| -+|||
T Consensus 259 hnsftvtedgkhdvlvyharnyteiegdplyd 290 (324)
T COG3940 259 HNSFTVTEDGKHDVLVYHARNYTEIEGDPLYD 290 (324)
T ss_pred CCceEecCCCcccEEEEeccccccccCCcCcC
Confidence 345889999999999983 33 46776
No 153
>KOG0696|consensus
Probab=20.35 E-value=2e+02 Score=30.13 Aligned_cols=72 Identities=15% Similarity=0.196 Sum_probs=44.9
Q ss_pred EEEEEEeeccCCC----cccCceEEEEEeCCCCc-cc-eeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcE
Q psy7271 160 QFRITVLQAVGIS----TEYSDIFCQFNFLHRHD-EA-FSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQ 233 (305)
Q Consensus 160 ~FrVtIlqAsGLp----~~ysdVFCQy~F~~~~e-e~-fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L 233 (305)
...|+|++|.+|- ..+||-|.+.+..-+.. ++ -.|..++.+ .++.|+.+ |+.++-++ - ....|
T Consensus 181 ~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~---LNP~wNEt--ftf~Lkp~--D----kdrRl 249 (683)
T KOG0696|consen 181 VLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKAT---LNPVWNET--FTFKLKPS--D----KDRRL 249 (683)
T ss_pred eEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhh---cCccccce--eEEecccc--c----cccee
Confidence 3467899999874 34999777776654332 21 234555544 34567766 44455554 2 56789
Q ss_pred EEEEeeccc
Q psy7271 234 IYQVWCSPL 242 (305)
Q Consensus 234 ~fEVwG~~~ 242 (305)
.||||--.+
T Consensus 250 siEvWDWDr 258 (683)
T KOG0696|consen 250 SIEVWDWDR 258 (683)
T ss_pred EEEEecccc
Confidence 999998543
No 154
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=20.32 E-value=90 Score=18.95 Aligned_cols=17 Identities=24% Similarity=0.638 Sum_probs=14.0
Q ss_pred eeeeEEcCCCCeeEEEE
Q psy7271 58 QKVAIVNEKGDVKGHLK 74 (305)
Q Consensus 58 ~~V~Ivs~~Gev~G~L~ 74 (305)
+.++|++.+|++.|.+.
T Consensus 24 ~~~~v~~~~~~~~g~i~ 40 (49)
T smart00116 24 RRLPVVDEEGRLVGIVT 40 (49)
T ss_pred CcccEECCCCeEEEEEE
Confidence 56799998898888875
Done!