RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy7271
(305 letters)
>gnl|CDD|221571 pfam12423, KIF1B, Kinesin protein 1B. This domain family is
found in eukaryotes, and is approximately 50 amino
acids in length. The family is found in association
with pfam00225, pfam00498. KIF1B is an anterograde
motor for transport of mitochondria in axons of
neuronal cells.
Length = 42
Score = 46.0 bits (110), Expect = 3e-07
Identities = 13/41 (31%), Positives = 16/41 (39%), Gaps = 6/41 (14%)
Query: 2 MREMYHNEAEMSPTSPDYNIESLTGGDPFYDRFPWFRLVGR 42
MREMY N E + DPFY+ L+G
Sbjct: 8 MREMYQNYDE------PEYSQHFKEEDPFYEPPENHSLIGV 42
>gnl|CDD|180446 PRK06180, PRK06180, short chain dehydrogenase; Provisional.
Length = 277
Score = 32.2 bits (74), Expect = 0.26
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 10/69 (14%)
Query: 86 TDLTG-TVKQSARIIFDDDQQTGRNNKKAVEDSGHQGDKVEDSECDGDSGRGDSSICSDV 144
TD G ++ ++ R I D D G + SG Q GD + +I + V
Sbjct: 185 TDWAGRSMVRTPRSIADYDALFGPIRQAREAKSGKQP---------GDPAKAAQAILAAV 235
Query: 145 KEEEPPPHL 153
+ +EPP HL
Sbjct: 236 ESDEPPLHL 244
>gnl|CDD|227466 COG5137, COG5137, Histone chaperone involved in gene silencing
[Transcription / Chromatin structure and dynamics].
Length = 279
Score = 29.2 bits (65), Expect = 2.7
Identities = 9/51 (17%), Positives = 17/51 (33%), Gaps = 1/51 (1%)
Query: 101 DDDQQTGRNNKKAVEDSGHQGDKVEDSECDGD-SGRGDSSICSDVKEEEPP 150
G N++ E+ + + +D E D G + +E E
Sbjct: 196 VGSDSYGEGNRELNEEEEEEAEGSDDGEDVVDYEGERIDKKQGEEEEMEEE 246
>gnl|CDD|219498 pfam07651, ANTH, ANTH domain. AP180 is an endocytotic accessory
proteins that has been implicated in the formation of
clathrin-coated pits. The domain is involved in
phosphatidylinositol 4,5-bisphosphate binding and is a
universal adaptor for nucleation of clathrin coats.
Length = 278
Score = 29.2 bits (66), Expect = 2.7
Identities = 6/24 (25%), Positives = 8/24 (33%)
Query: 257 MSRLWWSTVMNSRVEAYSCFTREY 280
+ R+ S Y F R Y
Sbjct: 89 LLRISSFDDSMSLTWDYGAFIRAY 112
>gnl|CDD|240529 cd13124, MATE_SpoVB_like, Stage V sporulation protein B, also
known as Stage III sporulation protein F, and related
proteins. The integral membrane protein SpoVB has been
implicated in the biosynthesis of the peptidoglycan
component of the spore cortex in Bacillus subtilis.
This model represents a subfamily of the multidrug and
toxic compound extrusion (MATE)-like proteins. Proteins
from the MATE family are involved in exporting
metabolites across the cell membrane and are often
responsible for multidrug resistance (MDR).
Length = 434
Score = 28.6 bits (65), Expect = 4.2
Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 15/60 (25%)
Query: 30 FYDRFPWFRLVGRAFVYLSNLMYPI------------PL-IQK-VAIVNEKGDVKGHLKI 75
Y R P ++G + L + YPI P+ I K VA N GD KG +I
Sbjct: 16 IY-RIPLQNIIGDEGMGLYQMAYPIYGIFLTLATAGIPVAISKLVAEYNALGDYKGARRI 74
>gnl|CDD|223822 COG0751, GlyS, Glycyl-tRNA synthetase, beta subunit [Translation,
ribosomal structure and biogenesis].
Length = 691
Score = 28.7 bits (65), Expect = 5.0
Identities = 14/63 (22%), Positives = 26/63 (41%), Gaps = 2/63 (3%)
Query: 39 LVGRAFVYLSNLMYPIPLIQKVAIVNEKGDVKGHLKI-AVQ-IVTDEESTDLTGTVKQSA 96
+GR YL + Y +I V +N + + A+Q + E+ L K+ +
Sbjct: 529 FLGRLRTYLQDEGYRKDIIDAVLALNPTDLLDIIARAEALQEFLDLPEAKALAAANKRVS 588
Query: 97 RII 99
I+
Sbjct: 589 NIL 591
>gnl|CDD|233355 TIGR01313, therm_gnt_kin, carbohydrate kinase, thermoresistant
glucokinase family. This model represents a subfamily
of proteins that includes thermoresistant and
thermosensitve isozymes of gluconate kinase
(gluconokinase) in E. coli and other related proteins;
members of this family are often named by similarity to
the thermostable isozyme. These proteins show homology
to shikimate kinases and adenylate kinases but not to
gluconate kinases from the FGGY family of carbohydrate
kinases.
Length = 163
Score = 27.0 bits (60), Expect = 8.3
Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Query: 17 PDYNIESLTGGDPFYD--RFPWFRLVGRA 43
P NIE ++ G P D R+PW + + A
Sbjct: 34 PAANIEKMSAGIPLNDDDRWPWLQNLNDA 62
>gnl|CDD|130804 TIGR01743, purR_Bsub, pur operon repressor, Bacillus subtilis type.
This model represents the puring operon repressor PurR
of low-GC Gram-positive bacteria. This homodimeric
repressor contains a large region homologous to
phosphoribosyltransferases and is inhibited by
5-phosphoribosyl 1-pyrophosphate [Purines, pyrimidines,
nucleosides, and nucleotides, Purine ribonucleotide
biosynthesis, Regulatory functions, DNA interactions].
Length = 268
Score = 27.4 bits (61), Expect = 9.3
Identities = 4/26 (15%), Positives = 16/26 (61%)
Query: 38 RLVGRAFVYLSNLMYPIPLIQKVAIV 63
R++ ++YL++++ ++ K+ +
Sbjct: 94 RILPGGYLYLTDILGKPSILSKIGKI 119
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.134 0.414
Gapped
Lambda K H
0.267 0.0833 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 15,237,004
Number of extensions: 1390974
Number of successful extensions: 1035
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1033
Number of HSP's successfully gapped: 12
Length of query: 305
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 208
Effective length of database: 6,635,264
Effective search space: 1380134912
Effective search space used: 1380134912
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.3 bits)