RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy7271
         (305 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
            acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
            synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 28.5 bits (63), Expect = 4.1
 Identities = 21/145 (14%), Positives = 43/145 (29%), Gaps = 47/145 (32%)

Query: 167  QAVGISTE-YS------DIFCQFNFLHRHDEA---------FS-TEPVKNTGK------G 203
            Q  G+  + Y       D++         + A         FS  + V N         G
Sbjct: 1627 QEQGMGMDLYKTSKAAQDVW---------NRADNHFKDTYGFSILDIVINNPVNLTIHFG 1677

Query: 204  TPLGFYHIQNLTSATAAHAA-------PLHP--HQSTSQIYQVWCSPL-ALYITSVCQPL 253
               G    +N ++               +    ++ ++     + S    L  T   QP 
Sbjct: 1678 GEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSY--TFRSEKGLLSATQFTQPA 1735

Query: 254  MVNMSRLWWSTVMNSR--VEAYSCF 276
            +  M +  +   + S+  + A + F
Sbjct: 1736 LTLMEKAAFE-DLKSKGLIPADATF 1759


>2crm_A Fibronectin type-III domain containing protein 3A; structural
           genomics, NPPSFA, national project on protein structural
           and functional analyses; NMR {Homo sapiens} SCOP:
           b.1.2.1
          Length = 120

 Score = 27.0 bits (60), Expect = 4.4
 Identities = 7/27 (25%), Positives = 12/27 (44%), Gaps = 1/27 (3%)

Query: 152 HLSPGTELQFRITVLQAVGISTEYSDI 178
            L+PG   + R+  +   G S   S+ 
Sbjct: 81  RLNPGCFYRLRVYCISDGGQS-AVSES 106


>1wfu_A Unnamed protein product; FN3 domain, similar to 1700007B22RIK
           protein, structural genomics, riken structural
           genomics/proteomics initiative, RSGI; NMR {Mus musculus}
           SCOP: b.1.2.1
          Length = 120

 Score = 26.8 bits (59), Expect = 4.8
 Identities = 10/27 (37%), Positives = 13/27 (48%), Gaps = 1/27 (3%)

Query: 152 HLSPGTELQFRITVLQAVGISTEYSDI 178
            L P T  +FR+ V    G   EYS +
Sbjct: 81  GLEPRTLYKFRLKVTSPSGEY-EYSPV 106


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.318    0.134    0.414 

Gapped
Lambda     K      H
   0.267   0.0541    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,690,306
Number of extensions: 268490
Number of successful extensions: 561
Number of sequences better than 10.0: 1
Number of HSP's gapped: 561
Number of HSP's successfully gapped: 5
Length of query: 305
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 212
Effective length of database: 4,105,140
Effective search space: 870289680
Effective search space used: 870289680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.2 bits)