RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7271
(305 letters)
>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis)
[TaxId: 7054]}
Length = 541
Score = 27.9 bits (61), Expect = 1.7
Identities = 18/99 (18%), Positives = 34/99 (34%), Gaps = 12/99 (12%)
Query: 1 MMREMYHNEAEMSPTSPDYNIESLTGGDPFYDRFPWFRLVGRA---------FVYLS--- 48
M+ Y N E + D + +G ++D F +V R V +
Sbjct: 393 MIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELE 452
Query: 49 NLMYPIPLIQKVAIVNEKGDVKGHLKIAVQIVTDEESTD 87
+++ P I + D G L AV ++ ++
Sbjct: 453 SILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMT 491
>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane
domain-containing protein 2, MCTP2 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 126
Score = 26.7 bits (58), Expect = 2.3
Identities = 6/50 (12%), Positives = 19/50 (38%)
Query: 31 YDRFPWFRLVGRAFVYLSNLMYPIPLIQKVAIVNEKGDVKGHLKIAVQIV 80
D +G+ + L ++ P + + + KG + + + ++
Sbjct: 75 EDGDKPPDFLGKVAIPLLSIRDGQPNCYVLKNKDLEQAFKGVIYLEMDLI 124
>d1k85a_ b.1.2.1 (A:) Fibronectin type III domain from chitinase A1.
{Bacillus circulans [TaxId: 1397]}
Length = 88
Score = 25.1 bits (54), Expect = 4.1
Identities = 6/26 (23%), Positives = 10/26 (38%)
Query: 153 LSPGTELQFRITVLQAVGISTEYSDI 178
L+ T F + A G + S+
Sbjct: 58 LAADTSYTFTVKAKDAAGNVSAASNA 83
>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}
Length = 225
Score = 26.2 bits (56), Expect = 5.3
Identities = 23/157 (14%), Positives = 47/157 (29%), Gaps = 6/157 (3%)
Query: 129 CDGDSGRGDSSICSDVKEEEPPPHLSPGTELQFRITVLQA----VGISTEYSDIFCQFNF 184
DG SG G ++C + E L G +R+ L A V +++E + + +
Sbjct: 8 IDGPSGAGKGTLCKAMAEALQWHLLDSG--AIYRVLALAALHHHVDVASEDALVPLASHL 65
Query: 185 LHRHDEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQIYQVWCSPLAL 244
R V G+ + +A+ A P + P +
Sbjct: 66 DVRFVSTNGNLEVILEGEDVSGEIRTQEVANAASQVAAFPRVREALLRRQRAFRELPGLI 125
Query: 245 YITSVCQPLMVNMSRLWWSTVMNSRVEAYSCFTREYR 281
++ + + +S A+ +
Sbjct: 126 ADGRDMGTVVFPDAPVKIFLDASSEERAHRRMLQLQV 162
>d1wisa1 b.1.2.1 (A:8-118) Sidekick 2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 111
Score = 25.3 bits (54), Expect = 5.6
Identities = 10/27 (37%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 151 PHLSPGTELQFRITVLQAVGISTEYSD 177
P L+P T FR+ + VG S S
Sbjct: 77 PDLNPFTCYSFRMRQVNIVGTS-PPSQ 102
>d1fnaa_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human
(Homo sapiens) [TaxId: 9606]}
Length = 91
Score = 24.8 bits (53), Expect = 6.0
Identities = 6/27 (22%), Positives = 9/27 (33%)
Query: 151 PHLSPGTELQFRITVLQAVGISTEYSD 177
L PG + + + G S S
Sbjct: 55 SGLKPGVDYTITVYAVTGRGDSPASSK 81
>d1bpva_ b.1.2.1 (A:) Type I titin module {Human (Homo sapiens)
[TaxId: 9606]}
Length = 104
Score = 24.9 bits (53), Expect = 6.0
Identities = 6/28 (21%), Positives = 11/28 (39%)
Query: 151 PHLSPGTELQFRITVLQAVGISTEYSDI 178
L+ +FR+ A G + S+
Sbjct: 65 SGLTEDAAYEFRVIAKNAAGAISPPSEP 92
>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 136
Score = 25.5 bits (55), Expect = 6.3
Identities = 10/55 (18%), Positives = 18/55 (32%)
Query: 31 YDRFPWFRLVGRAFVYLSNLMYPIPLIQKVAIVNEKGDVKGHLKIAVQIVTDEES 85
D VG A + L + + V + + KG + +A+ S
Sbjct: 80 KDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVVKDEEYKGEIWVALSFKPSGPS 134
>d1x4za1 b.1.2.1 (A:8-115) Brother of CDO precursor (BOC) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 108
Score = 24.7 bits (53), Expect = 8.0
Identities = 9/27 (33%), Positives = 12/27 (44%), Gaps = 1/27 (3%)
Query: 151 PHLSPGTELQFRITVLQAVGISTEYSD 177
L G +FR+ L +G S E S
Sbjct: 74 TGLEKGISYKFRVRALNMLGES-EPSA 99
>d2crma1 b.1.2.1 (A:8-114) Fibronectin type-III domain containing
protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 107
Score = 24.5 bits (52), Expect = 9.5
Identities = 10/39 (25%), Positives = 15/39 (38%), Gaps = 1/39 (2%)
Query: 140 ICSDVKEEEPPPHLSPGTELQFRITVLQAVGISTEYSDI 178
I S E L+PG + R+ + G S S+
Sbjct: 62 IYSGATREHLCDRLNPGCFYRLRVYCISDGGQS-AVSES 99
>d1wf5a1 b.1.2.1 (A:8-115) Sidekick 2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 108
Score = 24.4 bits (52), Expect = 9.5
Identities = 8/27 (29%), Positives = 12/27 (44%), Gaps = 1/27 (3%)
Query: 151 PHLSPGTELQFRITVLQAVGISTEYSD 177
L P QFR+ + VG ++S
Sbjct: 74 KGLVPARSYQFRLCAVNDVGKG-QFSK 99
>d3d48r2 b.1.2.1 (R:101-204) Prolactin receptor {Human (Homo
sapiens) [TaxId: 9606]}
Length = 104
Score = 24.6 bits (52), Expect = 9.8
Identities = 5/27 (18%), Positives = 10/27 (37%)
Query: 151 PHLSPGTELQFRITVLQAVGISTEYSD 177
L PG + ++ G + +S
Sbjct: 70 LSLHPGQKYLVQVRCKPDHGYWSAWSP 96
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.134 0.414
Gapped
Lambda K H
0.267 0.0417 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,151,437
Number of extensions: 51291
Number of successful extensions: 136
Number of sequences better than 10.0: 1
Number of HSP's gapped: 136
Number of HSP's successfully gapped: 17
Length of query: 305
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 220
Effective length of database: 1,240,546
Effective search space: 272920120
Effective search space used: 272920120
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)