BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7272
(275 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2EH0|A Chain A, Solution Structure Of The Fha Domain From Human Kinesin-
Like Protein Kif1b
Length = 130
Score = 146 bits (368), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 68/117 (58%), Positives = 87/117 (74%), Gaps = 8/117 (6%)
Query: 140 TPHLVNLNEDPFMSECLIYYIKDGRTKVGSAESNLPQESQDIQLSGSHIKTEHCTFEN-- 197
TPHLVNLNEDP MSECL+YYIKDG T+VG A++ + QDI LSG+HIK EHC F +
Sbjct: 8 TPHLVNLNEDPLMSECLLYYIKDGITRVGQADA---ERRQDIVLSGAHIKEEHCIFRSER 64
Query: 198 ---VEGVVTLIPFQEALCYVNGRQISEPTVLNTGSRVILGKNHVFRFNHPDQVRVHR 251
E +VTL P + + YVNG+++S+P L +G+R+I+GKNHVFRFNHP+Q R R
Sbjct: 65 SNSGEVIVTLEPCERSETYVNGKRVSQPVQLRSGNRIIMGKNHVFRFNHPEQARAER 121
>pdb|4EGX|A Chain A, Crystal Structure Of Kif1a Cc1-Fha Tandem
pdb|4EGX|B Chain B, Crystal Structure Of Kif1a Cc1-Fha Tandem
pdb|4EGX|C Chain C, Crystal Structure Of Kif1a Cc1-Fha Tandem
pdb|4EGX|D Chain D, Crystal Structure Of Kif1a Cc1-Fha Tandem
Length = 184
Score = 144 bits (362), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 67/117 (57%), Positives = 85/117 (72%), Gaps = 8/117 (6%)
Query: 140 TPHLVNLNEDPFMSECLIYYIKDGRTKVGSAESNLPQESQDIQLSGSHIKTEHCTFEN-- 197
TPHLVNLNEDP MSECL+YYIKDG T+VG + + QDI LSG IK EHC F +
Sbjct: 68 TPHLVNLNEDPLMSECLLYYIKDGITRVGREDG---ERRQDIVLSGHFIKEEHCVFRSDS 124
Query: 198 ---VEGVVTLIPFQEALCYVNGRQISEPTVLNTGSRVILGKNHVFRFNHPDQVRVHR 251
E VVTL P + A YVNG++++EP++L +G+R+I+GK+HVFRFNHP+Q R R
Sbjct: 125 RGGSEAVVTLEPCEGADTYVNGKKVTEPSILRSGNRIIMGKSHVFRFNHPEQARQER 181
Score = 99.8 bits (247), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 44/67 (65%), Positives = 59/67 (88%)
Query: 13 APASVIAEEAVDQLQASEKLIAELNETWEEKLKRTEEIRIQREAVFAEMGVAVKEDGNTV 72
P S +EEA+++L+ +EK+IAELNETWEEKL+RTE IR++REA+ AEMGVA++EDG T+
Sbjct: 1 GPGSEFSEEAIERLKETEKIIAELNETWEEKLRRTEAIRMEREALLAEMGVAMREDGGTL 60
Query: 73 GVFSPQK 79
GVFSP+K
Sbjct: 61 GVFSPKK 67
>pdb|4EJQ|A Chain A, Crystal Structure Of Kif1a C-Cc1-Fha
pdb|4EJQ|B Chain B, Crystal Structure Of Kif1a C-Cc1-Fha
pdb|4EJQ|C Chain C, Crystal Structure Of Kif1a C-Cc1-Fha
pdb|4EJQ|D Chain D, Crystal Structure Of Kif1a C-Cc1-Fha
pdb|4EJQ|E Chain E, Crystal Structure Of Kif1a C-Cc1-Fha
pdb|4EJQ|F Chain F, Crystal Structure Of Kif1a C-Cc1-Fha
pdb|4EJQ|G Chain G, Crystal Structure Of Kif1a C-Cc1-Fha
pdb|4EJQ|H Chain H, Crystal Structure Of Kif1a C-Cc1-Fha
Length = 154
Score = 142 bits (358), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 67/117 (57%), Positives = 85/117 (72%), Gaps = 8/117 (6%)
Query: 140 TPHLVNLNEDPFMSECLIYYIKDGRTKVGSAESNLPQESQDIQLSGSHIKTEHCTFEN-- 197
TPHLVNLNEDP MSECL+YYIKDG T+VG + + QDI LSG IK EHC F +
Sbjct: 38 TPHLVNLNEDPLMSECLLYYIKDGITRVGREDG---ERRQDIVLSGHFIKEEHCVFRSDS 94
Query: 198 ---VEGVVTLIPFQEALCYVNGRQISEPTVLNTGSRVILGKNHVFRFNHPDQVRVHR 251
E VVTL P + A YVNG++++EP++L +G+R+I+GK+HVFRFNHP+Q R R
Sbjct: 95 RGGSEAVVTLEPCEGADTYVNGKKVTEPSILRSGNRIIMGKSHVFRFNHPEQARQER 151
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/33 (69%), Positives = 30/33 (90%)
Query: 47 TEEIRIQREAVFAEMGVAVKEDGNTVGVFSPQK 79
TE IR++REA+ AEMGVA++EDG T+GVFSP+K
Sbjct: 5 TEAIRMEREALLAEMGVAMREDGGTLGVFSPKK 37
>pdb|2G1L|A Chain A, Crystal Structure Of The Fha Domain Of Human Kinesin
Family Member C
Length = 104
Score = 124 bits (311), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 60/109 (55%), Positives = 78/109 (71%), Gaps = 12/109 (11%)
Query: 140 TPHLVNLNEDPFMSECLIYYIKDGRTKVGSAESNLPQESQDIQLSGSHIKTEHCTFENV- 198
TPHLVNLNEDP MSECL+Y+IKDG T+VG Q DI+L+G I+ +HC F ++
Sbjct: 3 TPHLVNLNEDPLMSECLLYHIKDGVTRVG-------QVDMDIKLTGQFIREQHCLFRSIP 55
Query: 199 ----EGVVTLIPFQEALCYVNGRQISEPTVLNTGSRVILGKNHVFRFNH 243
E VVTL P + A YVNG+ ++EP VL +G+R+++GKNHVFRFNH
Sbjct: 56 QPDGEVVVTLEPCEGAETYVNGKLVTEPLVLKSGNRIVMGKNHVFRFNH 104
>pdb|1VFV|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFW|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFX|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-mg-alfx
pdb|1VFZ|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-Mg-Vo4
pdb|2ZFI|A Chain A, Crystal Structure Of The Kif1a Motor Domain Before Mg
Release
pdb|2ZFJ|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-1
pdb|2ZFK|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-2
pdb|2ZFL|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-3
pdb|2ZFM|A Chain A, Crystal Structure Of The Kif1a Motor Domain After Mg
Release
Length = 366
Score = 105 bits (262), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 55/62 (88%), Positives = 58/62 (93%)
Query: 78 QKAVDDMTDLTTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALA 137
QK D T++TTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALA
Sbjct: 227 QKRHDAETNITTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALA 286
Query: 138 EI 139
E+
Sbjct: 287 EM 288
>pdb|1I6I|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppcp
Length = 366
Score = 105 bits (262), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 55/62 (88%), Positives = 58/62 (93%)
Query: 78 QKAVDDMTDLTTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALA 137
QK D T++TTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALA
Sbjct: 227 QKRHDAETNITTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALA 286
Query: 138 EI 139
E+
Sbjct: 287 EM 288
>pdb|1I5S|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Adp
Length = 367
Score = 105 bits (262), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 55/62 (88%), Positives = 58/62 (93%)
Query: 78 QKAVDDMTDLTTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALA 137
QK D T++TTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALA
Sbjct: 227 QKRHDAETNITTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALA 286
Query: 138 EI 139
E+
Sbjct: 287 EM 288
>pdb|1IA0|K Chain K, Kif1a Head-Microtubule Complex Structure In Atp-Form
pdb|2HXF|C Chain C, Kif1a Head-Microtubule Complex Structure In Amppnp-Form
pdb|2HXH|C Chain C, Kif1a Head-Microtubule Complex Structure In Adp-Form
Length = 394
Score = 105 bits (261), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 55/62 (88%), Positives = 58/62 (93%)
Query: 78 QKAVDDMTDLTTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALA 137
QK D T++TTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALA
Sbjct: 243 QKRHDAETNITTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALA 302
Query: 138 EI 139
E+
Sbjct: 303 EM 304
>pdb|3FM8|A Chain A, Crystal Structure Of Full Length Centaurin Alpha-1 Bound
With The Fha Domain Of Kif13b (Capri Target)
pdb|3FM8|B Chain B, Crystal Structure Of Full Length Centaurin Alpha-1 Bound
With The Fha Domain Of Kif13b (Capri Target)
pdb|3MDB|A Chain A, Crystal Structure Of The Ternary Complex Of Full Length
Centaurin Alpha-1, Kif13b Fha Domain, And Ip4
pdb|3MDB|B Chain B, Crystal Structure Of The Ternary Complex Of Full Length
Centaurin Alpha-1, Kif13b Fha Domain, And Ip4
Length = 124
Score = 84.7 bits (208), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 47/103 (45%), Positives = 60/103 (58%), Gaps = 8/103 (7%)
Query: 143 LVNLNEDPFMSECLIYYIKDGRTKVGSAESNLPQESQDIQLSGSHIKTEHCTFE-NVEGV 201
LVNLN DP ++E L+YY+K+ T +GSA S QDIQL G I EHC + EG
Sbjct: 29 LVNLNADPALNELLVYYLKE-HTLIGSANS------QDIQLCGMGILPEHCIIDITSEGQ 81
Query: 202 VTLIPFQEALCYVNGRQISEPTVLNTGSRVILGKNHVFRFNHP 244
V L P + +VNG +S P L+ G R++ G NH FR N P
Sbjct: 82 VMLTPQKNTRTFVNGSSVSSPIQLHHGDRILWGNNHFFRLNLP 124
>pdb|3GBJ|A Chain A, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|B Chain B, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|C Chain C, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
Length = 354
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/73 (60%), Positives = 51/73 (69%)
Query: 90 EKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEITPHLVNLNED 149
EKV K+SLVDLAGSERA TGA G RLKEG+NINKSLTTLG VISALA+ +
Sbjct: 241 EKVGKLSLVDLAGSERATKTGAAGDRLKEGSNINKSLTTLGLVISALADQSAGKNKNKFV 300
Query: 150 PFMSECLIYYIKD 162
P+ L + +KD
Sbjct: 301 PYRDSVLTWLLKD 313
>pdb|2OWM|A Chain A, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|B Chain B, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|C Chain C, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|D Chain D, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
Length = 443
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/54 (74%), Positives = 47/54 (87%)
Query: 85 TDLTTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAE 138
TD TTE+ S+I LVDLAGSERA ST A G RL+EG+NINKSLTTLG+VI+ALA+
Sbjct: 285 TDDTTERSSRIRLVDLAGSERAKSTEATGQRLREGSNINKSLTTLGRVIAALAD 338
>pdb|3LRE|A Chain A, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
pdb|3LRE|B Chain B, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
Length = 355
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 31/48 (64%), Positives = 41/48 (85%)
Query: 91 KVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAE 138
+++K+SL+DLAGSERA ++GAKGTR EG NIN+SL LG VI+ALA+
Sbjct: 250 RIAKMSLIDLAGSERASTSGAKGTRFVEGTNINRSLLALGNVINALAD 297
>pdb|1WLN|A Chain A, Solution Structure Of The Fha Domain Of Mouse Afadin 6
Length = 120
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 67/118 (56%), Gaps = 7/118 (5%)
Query: 130 GKVISALAEITPHLVNLNEDPFMS--ECLIYYIKDGRTKVGSAESNLPQESQDIQLSGSH 187
G S+ E P+LV L+ D S + +Y ++ T+VG+ + + IQL G
Sbjct: 1 GSSGSSGPEKLPYLVELSPDGSDSRDKPKLYRLQLSVTEVGTEKF----DDNSIQLFGPG 56
Query: 188 IKTEHCTFENVEGVVTLIP-FQEALCYVNGRQISEPTVLNTGSRVILGKNHVFRFNHP 244
I+ HC N++GVVT+ P +A YV+G++ISE T+L +G R+ G +HVF+F P
Sbjct: 57 IQPHHCDLTNMDGVVTVTPRSMDAETYVDGQRISETTMLQSGMRLQFGTSHVFKFVDP 114
>pdb|2H58|A Chain A, Crystal Structure Of The Kifc3 Motor Domain In Complex
With Adp
Length = 330
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 52/84 (61%), Gaps = 8/84 (9%)
Query: 79 KAVDDMTDLTTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAE 138
+ VD T L T K++LVDLAGSER +GA+G+RL+E +INKSL+ LG VI+AL
Sbjct: 216 RGVDCSTGLRT--TGKLNLVDLAGSERVGKSGAEGSRLREAQHINKSLSALGDVIAALRS 273
Query: 139 ITPHLVNLNEDPFMSECLIYYIKD 162
H+ PF + L Y ++D
Sbjct: 274 RQGHV------PFRNSKLTYLLQD 291
>pdb|1T5C|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
pdb|1T5C|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
Length = 349
Score = 65.1 bits (157), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 32/48 (66%), Positives = 38/48 (79%)
Query: 91 KVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAE 138
KVS ++LVDLAGSERA TGA G RLKEG NIN+SL LG+VI L++
Sbjct: 226 KVSHLNLVDLAGSERAAQTGAAGVRLKEGCNINRSLFILGQVIKKLSD 273
>pdb|4AQV|C Chain C, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian
Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom
Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain
In The Ampppnp State.
pdb|4AQW|C Chain C, Model Of Human Kinesin-5 Motor Domain (1ii6, 3hqd) And
Mammalian Tubulin Heterodimer (1jff) Docked Into The
9.5- Angstrom Cryo-em Map Of Microtubule-bound Kinesin-5
Motor Domain In The Rigor State
Length = 373
Score = 64.3 bits (155), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 49/79 (62%), Gaps = 9/79 (11%)
Query: 91 KVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEITPHLVNLNEDP 150
K+ K++LVDLAGSE +GA R +E NIN+SL TLG+VI+AL E TPH+ P
Sbjct: 257 KIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHV------P 310
Query: 151 FMSECLIYYIKD---GRTK 166
+ L ++D GRT+
Sbjct: 311 YRESKLTRILQDSLGGRTR 329
>pdb|1Q0B|A Chain A, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|1Q0B|B Chain B, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|2FKY|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FKY|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FL2|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL2|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL6|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2FL6|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2IEH|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2IEH|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2Q2Y|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Y|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Z|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|2Q2Z|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|3CJO|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 30
pdb|3CJO|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 30
Length = 367
Score = 64.3 bits (155), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 49/79 (62%), Gaps = 9/79 (11%)
Query: 91 KVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEITPHLVNLNEDP 150
K+ K++LVDLAGSE +GA R +E NIN+SL TLG+VI+AL E TPH+ P
Sbjct: 256 KIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHV------P 309
Query: 151 FMSECLIYYIKD---GRTK 166
+ L ++D GRT+
Sbjct: 310 YRESKLTRILQDSLGGRTR 328
>pdb|4A28|A Chain A, Eg5-2
pdb|4A28|B Chain B, Eg5-2
Length = 368
Score = 63.9 bits (154), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 49/79 (62%), Gaps = 9/79 (11%)
Query: 91 KVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEITPHLVNLNEDP 150
K+ K++LVDLAGSE +GA R +E NIN+SL TLG+VI+AL E TPH+ P
Sbjct: 257 KIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHV------P 310
Query: 151 FMSECLIYYIKD---GRTK 166
+ L ++D GRT+
Sbjct: 311 YRESKLTRILQDSLGGRTR 329
>pdb|1II6|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1II6|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1YRS|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|1YRS|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2FME|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2FME|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2GM1|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|D Chain D, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|E Chain E, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2G1Q|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2G1Q|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2PG2|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2PG2|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2UYI|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYI|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYM|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|2UYM|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|3K5E|A Chain A, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K5E|B Chain B, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K3B|A Chain A, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3K3B|B Chain B, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3L9H|A Chain A, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|3L9H|B Chain B, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|2X7C|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7C|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7D|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7D|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7E|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2X7E|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2WOG|A Chain A, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|B Chain B, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|C Chain C, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2X2R|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2XAE|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|4A50|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
2-amino-5-(3-methylphenyl)-5,5-diphenylpentanoic Acid
pdb|4A51|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|D Chain D, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|E Chain E, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|F Chain F, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|G Chain G, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A5Y|A Chain A, Eg5-Inhibitor Complex
pdb|4A5Y|B Chain B, Eg5-Inhibitor Complex
pdb|4A5Y|C Chain C, Eg5-Inhibitor Complex
Length = 368
Score = 63.9 bits (154), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 49/79 (62%), Gaps = 9/79 (11%)
Query: 91 KVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEITPHLVNLNEDP 150
K+ K++LVDLAGSE +GA R +E NIN+SL TLG+VI+AL E TPH+ P
Sbjct: 257 KIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHV------P 310
Query: 151 FMSECLIYYIKD---GRTK 166
+ L ++D GRT+
Sbjct: 311 YRESKLTRILQDSLGGRTR 329
>pdb|4A1Z|A Chain A, Eg5-1
pdb|4A1Z|B Chain B, Eg5-1
Length = 368
Score = 63.9 bits (154), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 49/79 (62%), Gaps = 9/79 (11%)
Query: 91 KVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEITPHLVNLNEDP 150
K+ K++LVDLAGSE +GA R +E NIN+SL TLG+VI+AL E TPH+ P
Sbjct: 257 KIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHV------P 310
Query: 151 FMSECLIYYIKD---GRTK 166
+ L ++D GRT+
Sbjct: 311 YRESKLTRILQDSLGGRTR 329
>pdb|4AP0|A Chain A, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|B Chain B, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|C Chain C, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|D Chain D, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
Length = 370
Score = 63.9 bits (154), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 49/79 (62%), Gaps = 9/79 (11%)
Query: 91 KVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEITPHLVNLNEDP 150
K+ K++LVDLAGSE +GA R +E NIN+SL TLG+VI+AL E TPH+ P
Sbjct: 259 KIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHV------P 312
Query: 151 FMSECLIYYIKD---GRTK 166
+ L ++D GRT+
Sbjct: 313 YRESKLTRILQDSLGGRTR 331
>pdb|3HQD|A Chain A, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3HQD|B Chain B, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3KEN|A Chain A, Human Eg5 In Complex With S-Trityl-L-Cysteine
Length = 369
Score = 63.9 bits (154), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 49/79 (62%), Gaps = 9/79 (11%)
Query: 91 KVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEITPHLVNLNEDP 150
K+ K++LVDLAGSE +GA R +E NIN+SL TLG+VI+AL E TPH+ P
Sbjct: 257 KIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHV------P 310
Query: 151 FMSECLIYYIKD---GRTK 166
+ L ++D GRT+
Sbjct: 311 YRESKLTRILQDSLGGRTR 329
>pdb|1X88|A Chain A, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
pdb|1X88|B Chain B, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
Length = 359
Score = 63.9 bits (154), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 49/79 (62%), Gaps = 9/79 (11%)
Query: 91 KVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEITPHLVNLNEDP 150
K+ K++LVDLAGSE +GA R +E NIN+SL TLG+VI+AL E TPH+ P
Sbjct: 248 KIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHV------P 301
Query: 151 FMSECLIYYIKD---GRTK 166
+ L ++D GRT+
Sbjct: 302 YRESKLTRILQDSLGGRTR 320
>pdb|3ZCW|A Chain A, Eg5 - New Allosteric Binding Site
Length = 348
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 49/79 (62%), Gaps = 9/79 (11%)
Query: 91 KVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEITPHLVNLNEDP 150
K+ K++LVDLAGSE +GA R +E NIN+SL TLG+VI+AL E TPH+ P
Sbjct: 242 KIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHV------P 295
Query: 151 FMSECLIYYIKD---GRTK 166
+ L ++D GRT+
Sbjct: 296 YRESKLTRILQDSLGGRTR 314
>pdb|1SDM|A Chain A, Crystal Structure Of Kinesin-Like Calmodulin Binding
Protein
pdb|3CNZ|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3CNZ|B Chain B, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|C Chain C, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
Length = 369
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 58/103 (56%), Gaps = 17/103 (16%)
Query: 85 TDLTTEKVS--KISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEITPH 142
T+L T+ ++ K+S VDLAGSER +G+ G +LKE +INKSL+ LG VISAL+ H
Sbjct: 217 TNLQTQAIARGKLSFVDLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVISALSSGNQH 276
Query: 143 LVNLNEDPFMSECLIYYIKD---GRTK------VGSAESNLPQ 176
+ P+ + L + D G K + AESNL +
Sbjct: 277 I------PYRNHKLTMLMSDSLGGNAKTLMFVNISPAESNLDE 313
>pdb|3H4S|A Chain A, Structure Of The Complex Of A Mitotic Kinesin With Its
Calcium Binding Regulator
Length = 386
Score = 60.8 bits (146), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 62/116 (53%), Gaps = 18/116 (15%)
Query: 86 DLTTEKVS--KISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEITPHL 143
DL T+ + K+S VDLAGSER +G+ G +LKE +INKSL+ LG VI AL+ H+
Sbjct: 226 DLQTQSAARGKLSFVDLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVIGALSSGNQHI 285
Query: 144 VNLNEDPFMSECLIYYIKD---GRTK------VGSAESNLPQESQDIQLSGSHIKT 190
P+ + L + D G K V AESNL E+ + L S ++T
Sbjct: 286 ------PYRNHKLTMLMSDSLGGNAKTLMFVNVSPAESNL-DETYNSLLYASRVRT 334
>pdb|4ATX|C Chain C, Rigor Kinesin Motor Domain With An Ordered Neck-Linker,
Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em
Map Of Doublecortin-Microtubules Decorated With Kinesin
Length = 340
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/57 (57%), Positives = 42/57 (73%), Gaps = 1/57 (1%)
Query: 88 TTEKVS-KISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEITPHL 143
T +K+S K+ LVDLAGSE+ TGA+G L E NINKSL+ LG VISALAE + ++
Sbjct: 219 TEQKLSGKLYLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGSTYV 275
>pdb|1MKJ|A Chain A, Human Kinesin Motor Domain With Docked Neck Linker
Length = 349
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/57 (57%), Positives = 42/57 (73%), Gaps = 1/57 (1%)
Query: 88 TTEKVS-KISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEITPHL 143
T +K+S K+ LVDLAGSE+ TGA+G L E NINKSL+ LG VISALAE + ++
Sbjct: 219 TEQKLSGKLYLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGSTYV 275
>pdb|1BG2|A Chain A, Human Ubiquitous Kinesin Motor Domain
pdb|2P4N|K Chain K, Human Monomeric Kinesin (1bg2) And Bovine Tubulin (1jff)
Docked Into The 9-Angstrom Cryo-Em Map Of
Nucleotide-Free Kinesin Complexed To The Microtubule
Length = 325
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/57 (57%), Positives = 42/57 (73%), Gaps = 1/57 (1%)
Query: 88 TTEKVS-KISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEITPHL 143
T +K+S K+ LVDLAGSE+ TGA+G L E NINKSL+ LG VISALAE + ++
Sbjct: 219 TEQKLSGKLYLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGSTYV 275
>pdb|2Y5W|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y5W|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y65|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|C Chain C, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|D Chain D, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
Length = 365
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/45 (66%), Positives = 35/45 (77%)
Query: 94 KISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAE 138
K+ LVDLAGSE+ TGA+GT L E NINKSL+ LG VISALA+
Sbjct: 233 KLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSALGNVISALAD 277
>pdb|3B6U|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
pdb|3B6U|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
Length = 372
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/48 (62%), Positives = 36/48 (75%)
Query: 91 KVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAE 138
+V K++LVDLAGSER TGA+G RLKE IN SL+ LG VISAL +
Sbjct: 250 RVGKLNLVDLAGSERQAKTGAQGERLKEATKINLSLSALGNVISALVD 297
>pdb|2WBE|C Chain C, Kinesin-5-Tubulin Complex With Amppnp
Length = 373
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 49/80 (61%), Gaps = 10/80 (12%)
Query: 91 KVSKISLVDLAGSERADSTG-AKGTRLKEGANINKSLTTLGKVISALAEITPHLVNLNED 149
K+ K++LVDLAGSE G KG R++E NIN+SL TLG+VI+AL + PH+
Sbjct: 258 KIGKLNLVDLAGSENVSKAGNEKGIRVRETVNINQSLLTLGRVITALVDRAPHV------ 311
Query: 150 PFMSECLIYYIKD---GRTK 166
P+ L +++ GRTK
Sbjct: 312 PYRESKLTRLLQESLGGRTK 331
>pdb|2VVG|A Chain A, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
pdb|2VVG|B Chain B, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
Length = 350
Score = 57.8 bits (138), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 42/72 (58%), Gaps = 6/72 (8%)
Query: 91 KVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEITPHLVNLNEDP 150
+V K++LVDLAGSER TGA G L EGA IN SL+ LG VIS L E H+ P
Sbjct: 233 RVGKLNLVDLAGSERQSKTGATGETLVEGAKINLSLSALGLVISKLVEGATHI------P 286
Query: 151 FMSECLIYYIKD 162
+ L ++D
Sbjct: 287 YRDSKLTRLLQD 298
>pdb|3T0Q|A Chain A, Motor Domain Structure Of The Kar3-Like Kinesin From
Ashbya Gossypii
Length = 349
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 33/43 (76%)
Query: 94 KISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISAL 136
K++LVDLAGSER +S+ G RL+E NINKSL+ LG VI AL
Sbjct: 242 KLNLVDLAGSERINSSAVTGERLRETQNINKSLSCLGDVIYAL 284
>pdb|4A14|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/47 (61%), Positives = 31/47 (65%)
Query: 92 VSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAE 138
VSK VDLAGSER TG+ G RLKE IN SL LG VISAL +
Sbjct: 242 VSKFHFVDLAGSERVLKTGSTGERLKESIQINSSLLALGNVISALGD 288
>pdb|3BFN|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 22
Length = 388
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 46/85 (54%), Gaps = 8/85 (9%)
Query: 90 EKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEITPHLVNLNED 149
++ K+ L+DLAGSE TG KG RLKE IN SL LGKV+ AL + P +
Sbjct: 244 QREGKLYLIDLAGSEDNRRTGNKGLRLKESGAINTSLFVLGKVVDALNQGLPRV------ 297
Query: 150 PFMSECLIYYIKDGRTKVGSAESNL 174
P+ L ++D + GSA S L
Sbjct: 298 PYRDSKLTRLLQD--SLGGSAHSIL 320
>pdb|4ETP|A Chain A, C-Terminal Motor And Motor Homology Domain Of Kar3vik1
Fused To A Synthetic Heterodimeric Coiled Coil
Length = 403
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 41/70 (58%), Gaps = 9/70 (12%)
Query: 95 ISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAE---ITPHLVNLNEDPF 151
++LVDLAGSER + + G RL+E NINKSL+ LG VI AL + H+ PF
Sbjct: 296 LNLVDLAGSERINVSQVVGDRLRETQNINKSLSALGDVIHALGQPDSTKRHI------PF 349
Query: 152 MSECLIYYIK 161
+ L Y ++
Sbjct: 350 RNSKLTYLLQ 359
>pdb|1GOJ|A Chain A, Structure Of A Fast Kinesin: Implications For Atpase
Mechanism And Interactions With Microtubules
Length = 355
Score = 50.8 bits (120), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 34/50 (68%)
Query: 89 TEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAE 138
+ K ++ LVDLAGSE+ TGA G L+E INKSL+ LG VI+AL +
Sbjct: 225 SAKSGQLFLVDLAGSEKVGKTGASGQTLEEAKKINKSLSALGMVINALTD 274
>pdb|2GRY|A Chain A, Crystal Structure Of The Human Kif2 Motor Domain In
Complex With Adp
Length = 420
Score = 50.4 bits (119), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 40/94 (42%), Positives = 51/94 (54%), Gaps = 17/94 (18%)
Query: 94 KISLVDLAGSER-ADSTGA-KGTRLKEGANINKSLTTLGKVISALAEITPH-------LV 144
K SL+DLAG+ER AD++ A + TRL EGA INKSL L + I AL PH L
Sbjct: 319 KFSLIDLAGNERGADTSSADRQTRL-EGAEINKSLLALKECIRALGRNKPHTPFRASKLT 377
Query: 145 NLNEDPFMSE----CLIYYIKDGRTKVGSAESNL 174
+ D F+ E C+I I G + S E+ L
Sbjct: 378 QVLRDSFIGENSRTCMIATISPG---MASCENTL 408
>pdb|1F9T|A Chain A, Crystal Structures Of Kinesin Mutants Reveal A Signalling
Pathway For Activation Of The Motor Atpase
Length = 358
Score = 50.4 bits (119), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 41/70 (58%), Gaps = 9/70 (12%)
Query: 95 ISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAE---ITPHLVNLNEDPF 151
++LVDLAGSER + + G RL+E NINKSL+ LG VI AL + H+ PF
Sbjct: 251 LNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHI------PF 304
Query: 152 MSECLIYYIK 161
+ L Y ++
Sbjct: 305 RNSKLTYLLQ 314
>pdb|4H1G|A Chain A, Structure Of Candida Albicans Kar3 Motor Domain Fused To
Maltose- Binding Protein
Length = 715
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 44/67 (65%), Gaps = 5/67 (7%)
Query: 95 ISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEITPHLVNLNEDPFMSE 154
++L+DLAGSER +++ A+G RLKE INKSL+ LG VI +L +L + + P+ +
Sbjct: 612 LNLIDLAGSERLNNSRAEGDRLKETQAINKSLSCLGDVIHSL-----NLKDGSHVPYRNS 666
Query: 155 CLIYYIK 161
L Y +K
Sbjct: 667 KLTYLLK 673
>pdb|3KAR|A Chain A, The Motor Domain Of Kinesin-Like Protein Kar3, A
Saccharomyces Cerevisiae Kinesin-Related Protein
Length = 346
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 41/70 (58%), Gaps = 9/70 (12%)
Query: 95 ISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAE---ITPHLVNLNEDPF 151
++LVDLAGSER + + G RL+E NINKSL+ LG VI AL + H+ PF
Sbjct: 239 LNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHI------PF 292
Query: 152 MSECLIYYIK 161
+ L Y ++
Sbjct: 293 RNSKLTYLLQ 302
>pdb|1F9V|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 41/70 (58%), Gaps = 9/70 (12%)
Query: 95 ISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAE---ITPHLVNLNEDPF 151
++LVDLAGSER + + G RL+E NINKSL+ LG VI AL + H+ PF
Sbjct: 240 LNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHI------PF 293
Query: 152 MSECLIYYIK 161
+ L Y ++
Sbjct: 294 RNSKLTYLLQ 303
>pdb|4GKR|A Chain A, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
pdb|4GKR|B Chain B, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
Length = 371
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 48/78 (61%), Gaps = 5/78 (6%)
Query: 95 ISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEITPHLVNLNEDPFMSE 154
++LVDLAGSER +S+ G RL+E +INKSL+ LG VI AL ++ PF +
Sbjct: 264 LNLVDLAGSERLNSSMVVGERLRETQSINKSLSCLGDVIHALNSPDGQKRHI---PFRNS 320
Query: 155 CLIYYIKDGRTKVGSAES 172
L Y ++ + +GS+++
Sbjct: 321 KLTYLLQ--YSLIGSSKT 336
>pdb|3NWN|A Chain A, Crystal Structure Of The Human Kif9 Motor Domain In
Complex With Adp
Length = 359
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/46 (56%), Positives = 33/46 (71%)
Query: 93 SKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAE 138
SKI+LVDLAGSER +G++G LKE INKSL+ L + I AL +
Sbjct: 258 SKINLVDLAGSERLGKSGSEGQVLKEATYINKSLSFLEQAIIALGD 303
>pdb|2XT3|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/47 (57%), Positives = 29/47 (61%)
Query: 92 VSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAE 138
VSK VDLAGSER TG+ G KE IN SL LG VISAL +
Sbjct: 242 VSKFHFVDLAGSERVLKTGSTGELRKESIQINSSLLALGNVISALGD 288
>pdb|1V8J|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With Mg-adp
pdb|1V8K|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With
Mg-Amppnp
Length = 410
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 46/93 (49%), Gaps = 15/93 (16%)
Query: 94 KISLVDLAGSER-ADSTGAKGTRLKEGANINKSLTTLGKVISALAEITPH-------LVN 145
K SLVDLAG+ER AD++ A EGA INKSL L + I AL + H L
Sbjct: 301 KFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESKLTQ 360
Query: 146 LNEDPFMSE----CLIYYIKDGRTKVGSAESNL 174
+ D F+ E C+I I G + S E L
Sbjct: 361 VLRDSFIGENSRTCMIAMISPG---ISSCEYTL 390
>pdb|1F9W|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
pdb|1F9W|B Chain B, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 40/70 (57%), Gaps = 9/70 (12%)
Query: 95 ISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAE---ITPHLVNLNEDPF 151
++LVDLAGS R + + G RL+E NINKSL+ LG VI AL + H+ PF
Sbjct: 240 LNLVDLAGSARINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHI------PF 293
Query: 152 MSECLIYYIK 161
+ L Y ++
Sbjct: 294 RNSKLTYLLQ 303
>pdb|1F9U|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 40/70 (57%), Gaps = 9/70 (12%)
Query: 95 ISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAE---ITPHLVNLNEDPF 151
++LVDLAGSER + + G RL+E NI KSL+ LG VI AL + H+ PF
Sbjct: 240 LNLVDLAGSERINVSQVVGDRLRETQNIKKSLSCLGDVIHALGQPDSTKRHI------PF 293
Query: 152 MSECLIYYIK 161
+ L Y ++
Sbjct: 294 RNSKLTYLLQ 303
>pdb|3EDL|D Chain D, Kinesin13-Microtubule Ring Complex
Length = 331
Score = 47.4 bits (111), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 46/93 (49%), Gaps = 15/93 (16%)
Query: 94 KISLVDLAGSER-ADSTGAKGTRLKEGANINKSLTTLGKVISALAEITPH-------LVN 145
K SLVDLAG+ER AD++ A EGA INKSL L + I AL + H L
Sbjct: 229 KFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESKLTQ 288
Query: 146 LNEDPFMSE----CLIYYIKDGRTKVGSAESNL 174
+ D F+ E C+I I G + S E L
Sbjct: 289 VLRDSFIGENSRTCMIAMISPG---ISSCEYTL 318
>pdb|2HEH|A Chain A, Crystal Structure Of The Kif2c Motor Domain (Casp Target)
Length = 387
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 46/93 (49%), Gaps = 15/93 (16%)
Query: 94 KISLVDLAGSER-ADSTGAKGTRLKEGANINKSLTTLGKVISALAEITPH-------LVN 145
K SLVDLAG+ER AD++ A EGA INKSL L + I AL + H L
Sbjct: 281 KFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESKLTQ 340
Query: 146 LNEDPFMSE----CLIYYIKDGRTKVGSAESNL 174
+ D F+ E C+I I G + S E L
Sbjct: 341 VLRDSFIGENSRTCMIATISPG---ISSCEYTL 370
>pdb|2REP|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member C1
Length = 376
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 42/74 (56%), Gaps = 10/74 (13%)
Query: 93 SKISLVDLAGSERADSTGAKGT----RLKEGANINKSLTTLGKVISALAEITPHLVNLNE 148
+ +SLVDLAGSER D A G RL+E IN SL+TLG VI AL+ H+
Sbjct: 272 APLSLVDLAGSERLDPGLALGPGERERLRETQAINSSLSTLGLVIMALSNKESHV----- 326
Query: 149 DPFMSECLIYYIKD 162
P+ + L Y +++
Sbjct: 327 -PYRNSKLTYLLQN 339
>pdb|3PXN|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Kin10NOD IN Complex With Divalent Manganese And Adp
Length = 344
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 31/45 (68%)
Query: 93 SKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALA 137
S++++VDLAGSE TG +G +EG NIN L ++ KV+ ++A
Sbjct: 235 SRMNIVDLAGSEGVRRTGHEGVARQEGVNINLGLLSINKVVMSMA 279
>pdb|3DC4|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Adp
pdb|3DCB|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Amppnp
pdb|3DCO|N Chain N, Drosophila Nod (3dc4) And Bovine Tubulin (1jff) Docked
Into The 11-Angstrom Cryo-Em Map Of Nucleotide-Free Nod
Complexed To The Microtubule
Length = 344
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 31/45 (68%)
Query: 93 SKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALA 137
S++++VDLAGSE TG +G +EG NIN L ++ KV+ ++A
Sbjct: 235 SRMNIVDLAGSEGVRRTGHEGVARQEGVNINLGLLSINKVVMSMA 279
>pdb|2NCD|A Chain A, Ncd (Non-Claret Disjunctional) Dimer From D. Melanogaster
Length = 420
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 32/52 (61%), Gaps = 4/52 (7%)
Query: 92 VSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEITPHL 143
V I+LVDLAGSE ++ TR+ E NIN+SL+ L VI AL + H+
Sbjct: 293 VGSINLVDLAGSESPKTS----TRMTETKNINRSLSELTNVILALLQKQDHI 340
>pdb|1CZ7|A Chain A, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|B Chain B, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|C Chain C, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|D Chain D, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
Length = 406
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 32/52 (61%), Gaps = 4/52 (7%)
Query: 92 VSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEITPHL 143
V I+LVDLAGSE ++ TR+ E NIN+SL+ L VI AL + H+
Sbjct: 279 VGSINLVDLAGSESPKTS----TRMTETKNINRSLSELTNVILALLQKQDHI 326
>pdb|3U06|A Chain A, Crystal Structure Of The Kinesin-14 Ncdg347d
pdb|3U06|B Chain B, Crystal Structure Of The Kinesin-14 Ncdg347d
Length = 412
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 32/52 (61%), Gaps = 4/52 (7%)
Query: 92 VSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEITPHL 143
V I+LVDLAGSE ++ TR+ E NIN+SL+ L VI AL + H+
Sbjct: 285 VGSINLVDLAGSESPKTS----TRMTETKNINRSLSELTNVILALLQKQDHI 332
>pdb|3L1C|A Chain A, Kinesin-14 Protein Ncd, T436s Mutant
pdb|3L1C|B Chain B, Kinesin-14 Protein Ncd, T436s Mutant
Length = 383
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 32/52 (61%), Gaps = 4/52 (7%)
Query: 92 VSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEITPHL 143
V I+LVDLAGSE ++ TR+ E NIN+SL+ L VI AL + H+
Sbjct: 282 VGSINLVDLAGSESPKTS----TRMTETKNINRSLSELTNVILALLQKQDHI 329
>pdb|1RY6|A Chain A, Crystal Structure Of Internal Kinesin Motor Domain
Length = 360
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 45/89 (50%), Gaps = 11/89 (12%)
Query: 83 DMTDLTTE-KVSKISLVDLAGSER-ADSTGAKGTRLKEGANINKSLTTLGKVISALAEIT 140
D+ D+ + KI+ +DLAGSER AD+ +GANIN+SL L + I A+
Sbjct: 219 DLKDINKNTSLGKIAFIDLAGSERGADTVSQNKQTQTDGANINRSLLALKECIRAMDSDK 278
Query: 141 PHLVNLNEDPFMSECLIYYIKD---GRTK 166
H+ PF L ++D G++K
Sbjct: 279 NHI------PFRDSELTKVLRDIFVGKSK 301
>pdb|3B6V|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
pdb|3B6V|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
Length = 395
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 35/71 (49%), Gaps = 24/71 (33%)
Query: 91 KVSKISLVDLAGSERADSTG---AKGT---------------------RLKEGANINKSL 126
+V K++LVDLAGSER + G A G R KE + IN SL
Sbjct: 250 RVGKLNLVDLAGSERQNKAGPNTAGGAATPSSGGGGGGGGSGGGAGGERPKEASKINLSL 309
Query: 127 TTLGKVISALA 137
+ LG VI+ALA
Sbjct: 310 SALGNVIAALA 320
>pdb|1N6M|A Chain A, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
pdb|1N6M|B Chain B, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
Length = 409
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 31/52 (59%), Gaps = 4/52 (7%)
Query: 92 VSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEITPHL 143
V I+LVDLAGSE ++ TR+ E NI +SL+ L VI AL + H+
Sbjct: 282 VGSINLVDLAGSESPKTS----TRMTETKNIKRSLSELTNVILALLQKQDHI 329
>pdb|2KIN|B Chain B, Kinesin (Monomeric) From Rattus Norvegicus
Length = 100
Score = 31.6 bits (70), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 15/18 (83%), Positives = 16/18 (88%)
Query: 121 NINKSLTTLGKVISALAE 138
NINKSL+ LG VISALAE
Sbjct: 3 NINKSLSALGNVISALAE 20
>pdb|3CMG|A Chain A, Crystal Structure Of Putative Beta-Galactosidase From
Bacteroides Fragilis
Length = 667
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 8/54 (14%)
Query: 111 AKGTRLKEGANINKSLTTLGKVISALAEITPHLVNLNEDPFMSECLIYYIKDGR 164
++ LK+GA+I + L L + P L N EDPFM + I KDG+
Sbjct: 209 SRNVSLKQGADILEQLPLLIQ--------KPRLWNGCEDPFMYQVSISLHKDGK 254
>pdb|2JER|A Chain A, Agmatine Deiminase Of Enterococcus Faecalis Catalyzing Its
Reaction.
pdb|2JER|B Chain B, Agmatine Deiminase Of Enterococcus Faecalis Catalyzing Its
Reaction.
pdb|2JER|C Chain C, Agmatine Deiminase Of Enterococcus Faecalis Catalyzing Its
Reaction.
pdb|2JER|D Chain D, Agmatine Deiminase Of Enterococcus Faecalis Catalyzing Its
Reaction.
pdb|2JER|E Chain E, Agmatine Deiminase Of Enterococcus Faecalis Catalyzing Its
Reaction.
pdb|2JER|F Chain F, Agmatine Deiminase Of Enterococcus Faecalis Catalyzing Its
Reaction.
pdb|2JER|G Chain G, Agmatine Deiminase Of Enterococcus Faecalis Catalyzing Its
Reaction.
pdb|2JER|H Chain H, Agmatine Deiminase Of Enterococcus Faecalis Catalyzing Its
Reaction
Length = 389
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 142 HLVNLNEDPFMSECLIYYIKDGRTKVGSAESNLPQESQDIQLSGSHIKTEHCTFENVEGV 201
H+ + D F+ E +++ DG+ V + E L E ++ QLS I+ + C + NVE V
Sbjct: 145 HVDSYRTDDFVLEGGSFHV-DGQGTVLTTEMCLLSEGRNPQLSKEAIEQKLCDYLNVEKV 203
Query: 202 VTL 204
+ L
Sbjct: 204 LWL 206
>pdb|1DKG|D Chain D, Crystal Structure Of The Nucleotide Exchange Factor Grpe
Bound To The Atpase Domain Of The Molecular Chaperone
Dnak
Length = 383
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 25/114 (21%), Positives = 48/114 (42%), Gaps = 8/114 (7%)
Query: 119 GANINKSLTTLGKVISALAEITPHLVNLNEDPFMSECLIYYIKDGRTKVGS-AESNLPQE 177
G I L T ++ + TP ++ E + +I Y +DG T VG A+
Sbjct: 2 GKIIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTN 61
Query: 178 SQDIQLSGSHIKTEHCTFENVEGVVTLIPFQ-------EALCYVNGRQISEPTV 224
Q+ + + E V+ V+++PF+ +A V G++++ P +
Sbjct: 62 PQNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWVEVKGQKMAPPQI 115
>pdb|2KHO|A Chain A, Nmr-Rdc XRAY STRUCTURE OF E. COLI HSP70 (DNAK) CHAPERONE
(1-605) Complexed With Adp And Substrate
Length = 605
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 25/114 (21%), Positives = 48/114 (42%), Gaps = 8/114 (7%)
Query: 119 GANINKSLTTLGKVISALAEITPHLVNLNEDPFMSECLIYYIKDGRTKVGS-AESNLPQE 177
G I L T ++ + TP ++ E + +I Y +DG T VG A+
Sbjct: 2 GKIIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTN 61
Query: 178 SQDIQLSGSHIKTEHCTFENVEGVVTLIPFQ-------EALCYVNGRQISEPTV 224
Q+ + + E V+ V+++PF+ +A V G++++ P +
Sbjct: 62 PQNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWVEVKGQKMAPPQI 115
>pdb|2JQJ|A Chain A, Nmr Structure Of Yeast Dun1 Fha Domain
pdb|2JQL|A Chain A, Nmr Structure Of The Yeast Dun1 Fha Domain In Complex With
A Doubly Phosphorylated (Pt) Peptide Derived From Rad53
Scd1
Length = 151
Score = 28.1 bits (61), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 9/75 (12%)
Query: 178 SQDIQLSGSHIKTEHCTFENVE--------GVVTLIPFQEALCYVNG-RQISEPTVLNTG 228
S D+ LS I T H F ++ ++ +I ++NG R + + +L G
Sbjct: 47 SCDVILSEPDISTFHAEFHLLQMDVDNFQRNLINVIDKSRNGTFINGNRLVKKDYILKNG 106
Query: 229 SRVILGKNHVFRFNH 243
R++ GK+ F F +
Sbjct: 107 DRIVFGKSCSFLFKY 121
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 27.7 bits (60), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Query: 144 VNLNEDPFMSEC-LIYYIKDGRTKV---GSAESNLPQESQDIQLSGSHIKTEHCTFENVE 199
+NL +PF C L ++ + R K G+A P + +D+Q+ C+ EN E
Sbjct: 131 LNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSKVRDVQIKDLPHSEFKCSSENSE 190
Query: 200 GV 201
G
Sbjct: 191 GC 192
>pdb|3KIN|B Chain B, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|D Chain D, Kinesin (Dimeric) From Rattus Norvegicus
Length = 117
Score = 27.7 bits (60), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 14/18 (77%), Positives = 15/18 (83%)
Query: 123 NKSLTTLGKVISALAEIT 140
NKSL+ LG VISALAE T
Sbjct: 1 NKSLSALGNVISALAEGT 18
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.130 0.356
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,978,523
Number of Sequences: 62578
Number of extensions: 268535
Number of successful extensions: 707
Number of sequences better than 100.0: 79
Number of HSP's better than 100.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 606
Number of HSP's gapped (non-prelim): 91
length of query: 275
length of database: 14,973,337
effective HSP length: 97
effective length of query: 178
effective length of database: 8,903,271
effective search space: 1584782238
effective search space used: 1584782238
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (24.3 bits)