Query psy7272
Match_columns 275
No_of_seqs 281 out of 1719
Neff 7.2
Searched_HMMs 46136
Date Fri Aug 16 22:28:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7272.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7272hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0245|consensus 100.0 6.6E-54 1.4E-58 425.7 20.2 251 11-267 141-580 (1221)
2 KOG0241|consensus 100.0 6.1E-36 1.3E-40 294.6 10.3 207 19-249 185-548 (1714)
3 KOG4280|consensus 100.0 8.1E-33 1.8E-37 268.0 -2.5 187 12-221 138-344 (574)
4 KOG0243|consensus 100.0 3E-32 6.5E-37 275.0 -3.5 188 10-220 184-397 (1041)
5 KOG0240|consensus 99.9 6.4E-29 1.4E-33 236.7 2.6 162 36-221 177-339 (607)
6 PLN03188 kinesin-12 family pro 99.9 3.9E-29 8.4E-34 255.3 -6.2 192 11-220 231-441 (1320)
7 KOG0242|consensus 99.9 7.8E-29 1.7E-33 247.5 -4.1 162 31-216 172-334 (675)
8 cd01373 KISc_KLP2_like Kinesin 99.9 8.8E-28 1.9E-32 224.0 0.1 165 11-185 137-318 (337)
9 cd01368 KISc_KIF23_like Kinesi 99.9 1.4E-27 3E-32 223.3 -1.3 144 34-185 178-328 (345)
10 cd01370 KISc_KIP3_like Kinesin 99.9 2.5E-27 5.4E-32 221.0 0.2 141 34-185 177-319 (338)
11 KOG0247|consensus 99.9 2.7E-26 5.9E-31 223.7 6.1 163 39-219 279-442 (809)
12 KOG0239|consensus 99.9 4.4E-27 9.4E-32 234.4 -0.2 172 10-196 443-632 (670)
13 cd01364 KISc_BimC_Eg5 Kinesin 99.9 7.5E-26 1.6E-30 212.1 0.1 163 35-220 186-350 (352)
14 cd01376 KISc_KID_like Kinesin 99.9 1.8E-25 3.9E-30 206.9 1.1 128 34-175 168-295 (319)
15 cd01365 KISc_KIF1A_KIF1B Kines 99.9 1.4E-25 3.1E-30 210.5 -0.6 191 10-217 139-353 (356)
16 cd01363 Motor_domain Myosin an 99.9 9.3E-25 2E-29 187.4 4.1 121 43-174 58-180 (186)
17 cd01371 KISc_KIF3 Kinesin moto 99.9 4.1E-25 8.9E-30 205.7 -0.1 155 10-175 133-307 (333)
18 cd01369 KISc_KHC_KIF5 Kinesin 99.9 8.8E-26 1.9E-30 209.4 -5.8 154 10-175 129-299 (325)
19 cd01367 KISc_KIF2_like Kinesin 99.9 5.6E-25 1.2E-29 203.9 -0.7 152 9-175 131-298 (322)
20 KOG0246|consensus 99.9 1.1E-24 2.4E-29 207.6 0.6 135 34-186 387-523 (676)
21 cd01375 KISc_KIF9_like Kinesin 99.9 1.1E-24 2.5E-29 202.8 0.4 130 35-175 179-310 (334)
22 cd01372 KISc_KIF4 Kinesin moto 99.9 1.1E-24 2.4E-29 203.3 0.1 134 34-175 172-314 (341)
23 cd01366 KISc_C_terminal Kinesi 99.9 1.6E-24 3.4E-29 201.3 0.4 160 33-216 170-329 (329)
24 cd01374 KISc_CENP_E Kinesin mo 99.9 6.2E-24 1.3E-28 196.8 2.7 130 34-175 162-295 (321)
25 KOG0244|consensus 99.9 9.7E-25 2.1E-29 217.9 -3.7 176 6-193 114-306 (913)
26 smart00129 KISc Kinesin motor, 99.8 1.7E-22 3.6E-27 188.0 0.3 161 35-218 170-333 (335)
27 cd00106 KISc Kinesin motor dom 99.8 3.1E-22 6.6E-27 185.6 0.8 131 34-175 171-304 (328)
28 PF00225 Kinesin: Kinesin moto 99.8 5.7E-22 1.2E-26 184.3 1.5 127 38-175 177-309 (335)
29 COG5059 KIP1 Kinesin-like prot 99.8 1.8E-21 3.9E-26 192.4 -0.1 154 37-214 182-337 (568)
30 PF00498 FHA: FHA domain; Int 99.3 3E-12 6.4E-17 91.8 7.0 63 166-234 2-68 (68)
31 KOG1892|consensus 99.3 6.3E-12 1.4E-16 126.1 6.4 89 156-248 371-460 (1629)
32 cd00060 FHA Forkhead associate 99.1 8E-10 1.7E-14 84.3 9.7 82 155-242 13-101 (102)
33 TIGR03354 VI_FHA type VI secre 99.0 1.6E-09 3.5E-14 103.2 9.4 84 155-244 16-106 (396)
34 COG1716 FOG: FHA domain [Signa 98.8 5E-08 1.1E-12 83.2 9.5 69 164-238 90-159 (191)
35 COG3456 Predicted component of 98.8 2.5E-08 5.5E-13 93.7 8.2 79 157-242 20-103 (430)
36 smart00240 FHA Forkhead associ 98.5 3.4E-07 7.4E-12 61.6 5.1 48 166-219 2-52 (52)
37 PLN02927 antheraxanthin epoxid 98.4 5.8E-07 1.2E-11 90.8 8.3 81 161-242 555-645 (668)
38 KOG0241|consensus 98.2 1.1E-06 2.4E-11 89.3 4.5 52 17-68 386-437 (1714)
39 KOG0245|consensus 97.9 2E-05 4.4E-10 81.0 7.0 56 14-69 395-450 (1221)
40 KOG1882|consensus 96.7 0.0023 5E-08 56.6 4.9 65 165-234 196-276 (293)
41 TIGR02500 type_III_yscD type I 95.5 0.042 9.2E-07 52.9 7.5 80 156-243 13-95 (410)
42 KOG0615|consensus 95.1 0.036 7.7E-07 53.0 5.1 77 162-244 63-158 (475)
43 KOG1881|consensus 95.0 0.015 3.2E-07 58.7 2.6 77 163-245 177-268 (793)
44 COG5059 KIP1 Kinesin-like prot 95.0 0.0066 1.4E-07 60.8 0.0 67 66-137 500-566 (568)
45 PRK01777 hypothetical protein; 94.5 0.032 7E-07 42.8 2.7 45 208-255 48-92 (95)
46 KOG2293|consensus 91.5 0.45 9.7E-06 46.7 6.1 87 156-246 441-534 (547)
47 TIGR02988 YaaA_near_RecF S4 do 83.2 1.4 3E-05 30.3 2.9 26 208-233 32-58 (59)
48 KOG1880|consensus 80.3 3.5 7.5E-05 38.0 5.2 83 165-252 40-130 (337)
49 smart00363 S4 S4 RNA-binding d 80.1 2.7 5.8E-05 27.4 3.5 27 209-235 25-52 (60)
50 PRK06437 hypothetical protein; 79.7 2.2 4.8E-05 30.3 3.1 26 208-233 35-60 (67)
51 PF01479 S4: S4 domain; Inter 78.1 1.9 4E-05 28.1 2.1 23 209-231 25-48 (48)
52 cd00754 MoaD Ubiquitin domain 78.0 2.2 4.8E-05 30.6 2.7 24 210-233 50-73 (80)
53 cd00565 ThiS ThiaminS ubiquiti 75.1 3.1 6.7E-05 29.1 2.7 24 210-233 31-58 (65)
54 PF14451 Ub-Mut7C: Mut7-C ubiq 74.7 3.3 7.1E-05 30.7 2.8 24 211-234 51-74 (81)
55 PF14453 ThiS-like: ThiS-like 73.7 3.3 7.1E-05 28.7 2.4 23 211-233 31-53 (57)
56 TIGR01663 PNK-3'Pase polynucle 71.8 13 0.00028 37.2 7.1 66 161-234 30-99 (526)
57 PRK08364 sulfur carrier protei 69.6 4.8 0.0001 28.7 2.7 24 210-233 40-63 (70)
58 COG2501 S4-like RNA binding pr 68.4 9 0.0002 27.9 3.8 31 208-238 35-66 (73)
59 PF02597 ThiS: ThiS family; I 67.7 3.8 8.2E-05 29.1 1.8 26 208-233 42-70 (77)
60 PRK11507 ribosome-associated p 66.7 10 0.00023 27.3 3.9 30 208-237 35-65 (70)
61 COG2914 Uncharacterized protei 66.3 3.9 8.6E-05 31.3 1.7 45 209-256 49-93 (99)
62 cd00165 S4 S4/Hsp/ tRNA synthe 65.9 7.7 0.00017 26.0 3.1 27 209-235 25-52 (70)
63 COG1188 Ribosome-associated he 62.0 6.9 0.00015 30.2 2.3 30 208-237 32-61 (100)
64 PLN02799 Molybdopterin synthas 61.2 8.8 0.00019 27.9 2.8 23 211-233 53-75 (82)
65 PF13275 S4_2: S4 domain; PDB: 61.0 6.6 0.00014 27.9 1.9 27 210-236 33-60 (65)
66 PRK06488 sulfur carrier protei 60.7 9.1 0.0002 26.6 2.7 23 211-233 32-58 (65)
67 TIGR01682 moaD molybdopterin c 59.2 9.6 0.00021 27.6 2.7 23 211-233 51-73 (80)
68 TIGR01687 moaD_arch MoaD famil 59.1 9.4 0.0002 28.1 2.6 23 211-233 57-81 (88)
69 COG2104 ThiS Sulfur transfer p 58.5 10 0.00022 27.2 2.6 25 209-233 33-61 (68)
70 TIGR01683 thiS thiamine biosyn 57.7 13 0.00029 25.7 3.1 24 210-233 30-57 (64)
71 PRK05659 sulfur carrier protei 57.0 13 0.00027 25.8 2.9 23 211-233 33-59 (66)
72 cd01666 TGS_DRG_C TGS_DRG_C: 56.9 8.6 0.00019 28.0 2.0 21 213-233 53-73 (75)
73 PF02824 TGS: TGS domain; Int 55.1 10 0.00022 26.2 2.1 23 211-233 36-58 (60)
74 PRK07440 hypothetical protein; 54.2 17 0.00037 25.9 3.2 23 211-233 37-63 (70)
75 PRK11130 moaD molybdopterin sy 53.9 13 0.00029 27.1 2.7 23 211-233 52-74 (81)
76 PRK06944 sulfur carrier protei 53.8 14 0.00031 25.5 2.7 23 211-233 32-58 (65)
77 PF14478 DUF4430: Domain of un 50.6 13 0.00028 26.2 2.0 22 212-233 43-67 (68)
78 cd01764 Urm1 Urm1-like ubuitin 47.6 16 0.00036 27.6 2.4 24 211-234 61-88 (94)
79 PRK07696 sulfur carrier protei 46.8 23 0.00049 25.0 2.8 24 210-233 33-60 (67)
80 COG0522 RpsD Ribosomal protein 44.6 25 0.00055 30.7 3.4 25 210-234 119-144 (205)
81 PRK08053 sulfur carrier protei 41.0 33 0.00071 23.9 2.9 24 210-233 32-59 (66)
82 PRK10475 23S rRNA pseudouridin 40.0 50 0.0011 30.4 4.7 38 209-246 30-77 (290)
83 PRK10839 16S rRNA pseudouridyl 39.5 56 0.0012 28.6 4.8 38 209-246 24-70 (232)
84 KOG0652|consensus 38.2 51 0.0011 30.4 4.3 48 220-267 125-173 (424)
85 COG1984 DUR1 Allophanate hydro 37.4 1.2E+02 0.0026 28.3 6.7 63 166-238 42-106 (314)
86 smart00035 CLa CLUSTERIN alpha 37.4 1E+02 0.0022 27.2 5.8 52 4-62 85-136 (216)
87 cd01668 TGS_RelA_SpoT TGS_RelA 36.7 38 0.00083 22.3 2.7 22 212-233 37-58 (60)
88 cd01669 TGS_Ygr210_C TGS_Ygr21 35.6 34 0.00074 24.9 2.4 20 214-233 55-74 (76)
89 COG4064 MtrG Tetrahydromethano 34.7 74 0.0016 22.9 3.8 33 4-36 2-34 (75)
90 PF03658 Ub-RnfH: RnfH family 33.7 28 0.00061 26.0 1.7 39 208-249 45-83 (84)
91 COG0564 RluA Pseudouridylate s 33.6 44 0.00095 30.7 3.3 27 209-235 36-62 (289)
92 TIGR03069 PS_II_S4 photosystem 33.4 57 0.0012 29.4 3.9 36 208-243 206-242 (257)
93 smart00797 AHS2 Allophanate hy 32.8 1E+02 0.0022 28.3 5.5 30 208-237 53-84 (280)
94 PF02626 AHS2: Allophanate hyd 32.2 75 0.0016 28.9 4.5 29 208-236 53-83 (271)
95 COG4110 Uncharacterized protei 32.0 1.8E+02 0.0038 24.7 6.2 69 131-214 66-146 (200)
96 PRK06083 sulfur carrier protei 31.9 54 0.0012 24.4 3.0 23 211-233 51-77 (84)
97 COG1516 FliS Flagellin-specifi 30.4 69 0.0015 26.1 3.5 24 23-46 100-123 (132)
98 PRK05327 rpsD 30S ribosomal pr 30.1 52 0.0011 28.6 3.0 28 209-236 117-145 (203)
99 TIGR01017 rpsD_bact ribosomal 28.2 59 0.0013 28.2 3.0 29 208-236 113-142 (200)
100 TIGR00005 rluA_subfam pseudour 27.4 91 0.002 28.3 4.3 25 209-233 30-55 (299)
101 TIGR01149 mtrG N5-methyltetrah 27.4 1.5E+02 0.0032 21.4 4.3 32 6-37 1-32 (70)
102 TIGR00724 urea_amlyse_rel biot 27.0 1.3E+02 0.0028 28.1 5.2 29 209-237 76-107 (314)
103 TIGR00208 fliS flagellar biosy 26.9 88 0.0019 24.9 3.6 23 23-45 100-122 (124)
104 PF08649 DASH_Dad1: DASH compl 26.6 1.6E+02 0.0034 20.5 4.2 24 27-50 5-28 (58)
105 CHL00113 rps4 ribosomal protei 26.1 68 0.0015 27.9 3.0 27 208-234 112-139 (201)
106 COG3524 KpsE Capsule polysacch 25.1 3.1E+02 0.0067 25.8 7.1 29 11-39 145-175 (372)
107 PRK10348 ribosome-associated h 24.7 81 0.0018 25.7 3.0 28 208-235 32-59 (133)
108 cd01616 TGS The TGS domain, na 24.0 87 0.0019 19.8 2.7 22 212-233 37-58 (60)
109 COG0718 Uncharacterized protei 23.8 2.2E+02 0.0048 22.2 5.1 54 2-60 45-98 (105)
110 PF04210 MtrG: Tetrahydrometha 23.4 1.9E+02 0.004 20.9 4.2 32 6-37 1-32 (70)
111 PRK11025 23S rRNA pseudouridyl 22.4 81 0.0018 29.1 3.0 25 209-233 44-68 (317)
112 PF01093 Clusterin: Clusterin; 21.7 2.1E+02 0.0046 28.0 5.7 68 3-78 298-373 (436)
113 PF08308 PEGA: PEGA domain; I 21.4 1.5E+02 0.0034 20.4 3.7 40 202-244 4-44 (71)
114 PRK05863 sulfur carrier protei 21.3 76 0.0017 22.0 2.0 23 211-233 33-58 (65)
115 PRK01026 tetrahydromethanopter 21.2 2.2E+02 0.0047 21.0 4.3 34 4-37 2-35 (77)
116 PF11012 DUF2850: Protein of u 21.0 2.8E+02 0.006 20.5 4.9 39 208-247 22-63 (79)
117 PF02561 FliS: Flagellar prote 20.9 1.3E+02 0.0028 23.5 3.5 23 23-45 98-120 (122)
118 PF10112 Halogen_Hydrol: 5-bro 20.4 1.9E+02 0.0042 24.6 4.8 36 16-51 152-187 (199)
119 PLN00051 RNA-binding S4 domain 20.3 1.2E+02 0.0026 27.6 3.5 35 209-243 215-250 (267)
120 PRK10626 hypothetical protein; 20.3 1.2E+02 0.0026 27.2 3.4 31 188-220 34-64 (239)
No 1
>KOG0245|consensus
Probab=100.00 E-value=6.6e-54 Score=425.66 Aligned_cols=251 Identities=51% Similarity=0.725 Sum_probs=232.1
Q ss_pred EEecCCcchHHHHHHHH------------------HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccCCcee
Q psy7272 11 TVAPASVIAEEAVDQLQ------------------ASEKLIAELNETWEEKLKRTEEIRIQREAVFAEMGVAVKEDGNTV 72 (275)
Q Consensus 11 ~~~~~~~~~~~~~~~L~------------------e~E~L~~el~~t~EE~L~~~e~~~~~r~~~~t~~~~~~~~ssrsh 72 (275)
.|..+|.|.|.+.|-|. .+|.|-+-...+|.+.-..++.+.++|.+|+|+||. .|||||
T Consensus 141 evSymEIYcErVrDLL~~p~~kg~LRVREHP~lGPYVedLS~~aV~Sy~dI~~~md~GNkqRTtAATnMNd---tSSRSH 217 (1221)
T KOG0245|consen 141 EVSYMEIYCERVRDLLNAPKSKGGLRVREHPILGPYVEDLSKLAVTSYADIQDLMDEGNKQRTTAATNMND---TSSRSH 217 (1221)
T ss_pred EEeehhHHHHHHHHHhhCCCCCCCceeeccCccChhHhHhhhcccccHHHHHHHHHhcchhhhhhhhcccc---ccccce
Confidence 56777888888888887 677888888888888888888888899999999994 499999
Q ss_pred eEEee---eeeeecCCCCcceeEeeeEEeeccCcccccccCccccccccccccccchhhHHHHHHHhhhccc--------
Q psy7272 73 GVFSP---QKAVDDMTDLTTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEITP-------- 141 (275)
Q Consensus 73 ~if~i---~~~~~~~~~~~~~~~s~l~lvDLAGSEr~~~~~~~~~~~~E~~~IN~SL~~Lg~vi~al~~~~~-------- 141 (275)
+|||| +..++...+...+++|||+|||||||||+..+|+.|+|++||++|||||.+||+||.|||+.+.
T Consensus 218 aVFtIvftQk~~~~~~~l~sek~SKIsLVDLAGSERasstGa~G~RLKEGa~INKSLtTLGkVISALAe~~~~k~~ks~f 297 (1221)
T KOG0245|consen 218 AVFTIVFTQKKHDQDTGLDSEKVSKISLVDLAGSERASSTGANGDRLKEGANINKSLTTLGKVISALAESQKGKKKKSDF 297 (1221)
T ss_pred eEEEEEEEeeeccccCCCcceeeeeeeEEeccCcccccccCCCccchhcccccchHHHHHHHHHHHHHHHhccCCCCCcc
Confidence 99998 5666777778899999999999999999999999999999999999999999999999997431
Q ss_pred --------------------------------------------------------------------------------
Q psy7272 142 -------------------------------------------------------------------------------- 141 (275)
Q Consensus 142 -------------------------------------------------------------------------------- 141 (275)
T Consensus 298 IPYRDSVLTWLLkEnLGGNSKTaMIAAlSPAdiNyeETLSTLRYAdRAK~Iv~~avVNEdpnaKLIRELreEv~rLksll 377 (1221)
T KOG0245|consen 298 IPYRDSVLTWLLKENLGGNSKTAMIAALSPADINYEETLSTLRYADRAKQIVNNAVVNEDPNAKLIRELREEVARLKSLL 377 (1221)
T ss_pred ccchHHHHHHHHHHhcCCcchhhhhhccChhhcChHHHHHHHHHhhHhhhhhccceeCCCccHHHHHHHHHHHHHHHHHH
Confidence
Q ss_pred ------------------------------------------------------------------------------CC
Q psy7272 142 ------------------------------------------------------------------------------HL 143 (275)
Q Consensus 142 ------------------------------------------------------------------------------~l 143 (275)
|+
T Consensus 378 ~~~~~~~~~~~~~p~~~~~~~~~e~~~~~L~E~Ek~mael~etW~EKl~~aEair~e~~~~L~emGva~~~D~~kk~phL 457 (1221)
T KOG0245|consen 378 RAQGLGDIAVEGSPSALLSQPEIEELRERLQETEKIMAELNETWEEKLREAEAIRMEREALLAEMGVAVREDGGKKTPHL 457 (1221)
T ss_pred hccccccccccCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCceeeecCCccCcce
Confidence 99
Q ss_pred cCCCCCCCCcceeEEEeeccccccCCCCCCCCCCcceeeecCCcccccceEEEEeCCE--EEEEeCCCCceEECCeeecc
Q psy7272 144 VNLNEDPFMSECLIYYIKDGRTKVGSAESNLPQESQDIQLSGSHIKTEHCTFENVEGV--VTLIPFQEALCYVNGRQISE 221 (275)
Q Consensus 144 ~~l~~~P~r~s~Lt~~L~~~~t~IGr~~~~~~~~~~dI~L~~~~Is~~Hc~I~~~e~~--vtL~~~s~a~t~VNG~~I~~ 221 (275)
+|||+||..+.+|.|+|++|.+.||+.++... +||.|+|..|..+||.|.+.+|. |+|.|+.+|.|||||++|.+
T Consensus 458 VNLneDPllSe~LlY~ikeG~TrVG~~~a~~~---~DI~LsG~~I~~qHC~i~~~~g~~~vtl~p~e~aetyVNGk~v~e 534 (1221)
T KOG0245|consen 458 VNLNEDPLLSECLLYYIKEGETRVGREDASSR---QDIVLSGQLIREQHCSIRNEGGNDVVTLEPCEDAETYVNGKLVTE 534 (1221)
T ss_pred eccCCCchhhccEEEEeccCceecCCCCcccC---CceEecchhhhhhceEEEecCCCceEEeccCCccceeEccEEcCC
Confidence 99999999999999999999999999887666 99999999999999999999887 99999999999999999999
Q ss_pred ceecCCCCEEEeCCceEEEEeCCchhhhhhhccCCCCCCccCcccc
Q psy7272 222 PTVLNTGSRVILGKNHVFRFNHPDQVRVHRENKKNASDKSESKKDK 267 (275)
Q Consensus 222 ~~~L~~GDrI~lG~~~~f~f~~P~~a~~~r~~~~~~~~~~~~~~~~ 267 (275)
|++|++||||+||.+|+|||+||.++|..|++.+++++||||+.|.
T Consensus 535 p~qL~~GdRiilG~~H~frfn~P~~ar~~r~~~~~~~~~~~pvD~~ 580 (1221)
T KOG0245|consen 535 PTQLRSGDRIILGGNHVFRFNHPEQARQERERTPPAPTPPEPVDWK 580 (1221)
T ss_pred cceeccCCEEEEcCceeEEecCHHHHhhhcccCCCCCCCCCCccHH
Confidence 9999999999999999999999999999999999999999999885
No 2
>KOG0241|consensus
Probab=100.00 E-value=6.1e-36 Score=294.64 Aligned_cols=207 Identities=49% Similarity=0.679 Sum_probs=176.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccCCceeeEEee---eeeeecCCCCcceeEeee
Q psy7272 19 AEEAVDQLQASEKLIAELNETWEEKLKRTEEIRIQREAVFAEMGVAVKEDGNTVGVFSP---QKAVDDMTDLTTEKVSKI 95 (275)
Q Consensus 19 ~~~~~~~L~e~E~L~~el~~t~EE~L~~~e~~~~~r~~~~t~~~~~~~~ssrsh~if~i---~~~~~~~~~~~~~~~s~l 95 (275)
++-++...++++.||.+.|++ |.+++|+|| ..|||||+||.+ +..++..++...+++|||
T Consensus 185 S~laV~S~qdId~lm~egnKs--------------rtvaatnmn---~EssrsHaVFslvvtQ~l~D~ktg~SgeKvskl 247 (1714)
T KOG0241|consen 185 SQLAVTSFQDIDSLMSEGNKS--------------RTVAATNMN---EESSRSHAVFSLVVTQTLYDLKTGHSGEKVSKL 247 (1714)
T ss_pred hhhhcccHHHHHHHHHhcccc--------------ceeeeeccc---ccccccceeEEEEEeeEEeccccCcchhheeee
Confidence 566667788888888888877 888999998 559999999997 567788889999999999
Q ss_pred EEeeccCcccccccCccccccccccccccchhhHHHHHHHhhhccc----------------------------------
Q psy7272 96 SLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEITP---------------------------------- 141 (275)
Q Consensus 96 ~lvDLAGSEr~~~~~~~~~~~~E~~~IN~SL~~Lg~vi~al~~~~~---------------------------------- 141 (275)
.|||||||||..++++.|+|++|+.|||+||++||.||.||++++.
T Consensus 248 slVDLAgserasktga~g~rlkegsNinkSLttLglVIsaLadq~n~kgkdKfvPYrDSVLTwLLkD~LGGNsrTvMiat 327 (1714)
T KOG0241|consen 248 SLVDLAGSERASKTGAAGSRLKEGSNINKSLTTLGLVISALADQKNGKGKDKFVPYRDSVLTWLLKDNLGGNSRTVMIAT 327 (1714)
T ss_pred eEEEeccccccccccchhhhhhhcCCcchhhHHHHHHHHHHHHhhcCCCccccccchhHHHHHHHHhhcCCCceeEEEEE
Confidence 9999999999999999999999999999999999999999998654
Q ss_pred --------------------------------------------------------------------------------
Q psy7272 142 -------------------------------------------------------------------------------- 141 (275)
Q Consensus 142 -------------------------------------------------------------------------------- 141 (275)
T Consensus 328 vSPaAdnyeeTlStLRYadrAkrIvN~avvNedpnarvirElReEve~lr~qL~~ae~~~~~el~e~l~esekli~ei~~ 407 (1714)
T KOG0241|consen 328 VSPAADNYEETLSTLRYADRAKRIVNHAVVNEDPNARVIRELREEVEKLREQLEQAEAMKLPELKEKLEESEKLIKEITV 407 (1714)
T ss_pred ecccccchHHHHHHHHHHHHHHHhhccccccCCchHHHHHHHHHHHHHHHHHHhhhhhccchHHHHHHHHHHHHHHHHHh
Confidence
Q ss_pred ---------------------------------------CCcCCCCCCCCcceeEEEeeccccccCCCCCCCCCCcceee
Q psy7272 142 ---------------------------------------HLVNLNEDPFMSECLIYYIKDGRTKVGSAESNLPQESQDIQ 182 (275)
Q Consensus 142 ---------------------------------------~l~~l~~~P~r~s~Lt~~L~~~~t~IGr~~~~~~~~~~dI~ 182 (275)
++++++.+|-....+.|+|+++ +.||.... .+|+
T Consensus 408 twEEkl~ktE~in~erq~~L~~~gis~~~sgikv~dDK~ylvnlnadP~lnellvyyl~~~-tlig~~~~------~~i~ 480 (1714)
T KOG0241|consen 408 TWEEKLRKTEEINQERQAQLESMGISLENSGIKVGDDKCYLVNLNADPALNELLVYYLKDH-TLIGLFKS------QDIQ 480 (1714)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccceEEEeccCCccHHHHHHHhhcCc-eeeccccC------ccee
Confidence 3444444555555555555443 35665444 7999
Q ss_pred ecCCcccccceEEEEe-CCEEEEEeCCCCceEECCeeeccceecCCCCEEEeCCceEEEEeCCchhhh
Q psy7272 183 LSGSHIKTEHCTFENV-EGVVTLIPFQEALCYVNGRQISEPTVLNTGSRVILGKNHVFRFNHPDQVRV 249 (275)
Q Consensus 183 L~~~~Is~~Hc~I~~~-e~~vtL~~~s~a~t~VNG~~I~~~~~L~~GDrI~lG~~~~f~f~~P~~a~~ 249 (275)
+++.+|.|.||.+..+ ++.+++.|..+++++|||..|.++++|+|||||.+|++|+|+.+-|...++
T Consensus 481 l~glgi~p~h~vidI~~dg~l~~~p~~~~R~~VNGs~v~~~t~L~~GdRiLwGnnHFFrvN~PK~~~~ 548 (1714)
T KOG0241|consen 481 LSGLGIQPKHCVIDIESDGELRLTPLLNARSCVNGSLVCSTTQLWHGDRILWGNNHFFRVNLPKRKRR 548 (1714)
T ss_pred eecCcccCccceeeeccCCcEEecccccceeeecCceeccccccccCceEEecccceEEecCcccccc
Confidence 9999999999999865 556999999999999999999999999999999999999999999976654
No 3
>KOG4280|consensus
Probab=99.97 E-value=8.1e-33 Score=268.05 Aligned_cols=187 Identities=31% Similarity=0.370 Sum_probs=159.8
Q ss_pred EecCCcchHHHHHHHHH-----------------HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccCCceeeE
Q psy7272 12 VAPASVIAEEAVDQLQA-----------------SEKLIAELNETWEEKLKRTEEIRIQREAVFAEMGVAVKEDGNTVGV 74 (275)
Q Consensus 12 ~~~~~~~~~~~~~~L~e-----------------~E~L~~el~~t~EE~L~~~e~~~~~r~~~~t~~~~~~~~ssrsh~i 74 (275)
|...+-|.|++.|-|.. ++.|.+....+.++.+..+..+..+|.++.|.|| ..|||||+|
T Consensus 138 vS~lEiYnE~i~DLL~~~~~~~l~lre~p~~Gv~V~nlse~~v~s~~d~~~~l~~G~~nR~vgat~mn---~~SsRSH~i 214 (574)
T KOG4280|consen 138 VSYLEIYNESIRDLLSPVNPKGLELREDPKCGVYVENLSEMDVESAEDAQQLLVVGLANRRVGATSMN---EESSRSHAI 214 (574)
T ss_pred eehHHHHhHHHHHHhCccCcCCceeeEcCCCceEecCcceeecCCHHHHHHHHHHHHhhcchhhccCC---cccccceEE
Confidence 44455678888888776 4567788889999999999999999999999998 559999999
Q ss_pred Eeeeeeeec--CCCCcceeEeeeEEeeccCcccccccCccccccccccccccchhhHHHHHHHhhhccc-CCcCCCCCCC
Q psy7272 75 FSPQKAVDD--MTDLTTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEITP-HLVNLNEDPF 151 (275)
Q Consensus 75 f~i~~~~~~--~~~~~~~~~s~l~lvDLAGSEr~~~~~~~~~~~~E~~~IN~SL~~Lg~vi~al~~~~~-~l~~l~~~P~ 151 (275)
||+.+.... ..+....++|||||||||||||..+++++|+|++|+.+||+||++||+||.||++.+. |+ ||
T Consensus 215 ft~~i~~~~~~~~~~~~~~~~rlnlvDLagsEr~~~tga~G~rlkEa~~IN~SLs~LG~vI~aLvd~~~~HI------PY 288 (574)
T KOG4280|consen 215 FTIHIESSEKSDGGLMSGRSSKLNLVDLAGSERQSKTGAEGERLKEATNINLSLSALGNVISALVDGSKTHI------PY 288 (574)
T ss_pred EEEEEEeecccCCCccccccceeeeeeccchhhhcccCccchhhhhhcccchhHHHHHHHHHHHhccccCCC------Cc
Confidence 999876622 4567788999999999999999999999999999999999999999999999999887 77 99
Q ss_pred CcceeEEEeeccccccCCCCCCCCCCcceeeecCCcccccceEEEEeCCEEEEEeCCCCceEECCeeecc
Q psy7272 152 MSECLIYYIKDGRTKVGSAESNLPQESQDIQLSGSHIKTEHCTFENVEGVVTLIPFQEALCYVNGRQISE 221 (275)
Q Consensus 152 r~s~Lt~~L~~~~t~IGr~~~~~~~~~~dI~L~~~~Is~~Hc~I~~~e~~vtL~~~s~a~t~VNG~~I~~ 221 (275)
|+|+||++|||+++ |++.+.|+ ++|.+...... ++..||+++++|+-+-|-..|++
T Consensus 289 RdSkLT~LLqdSLG--GN~kT~mi---anvsp~~~~~~---------ETlsTLrfA~Rak~I~nk~~ine 344 (574)
T KOG4280|consen 289 RDSKLTRLLQDSLG--GNSKTTMI---ANVSPSSDNYE---------ETLSTLRFAQRAKAIKNKPVINE 344 (574)
T ss_pred chhHHHHHHHHHcC--CCceEEEE---EecCchhhhhH---------HHHHHHHHHHHHHHhhccccccC
Confidence 99999999999999 99998777 66666554433 77789999988877777666654
No 4
>KOG0243|consensus
Probab=99.96 E-value=3e-32 Score=275.05 Aligned_cols=188 Identities=26% Similarity=0.304 Sum_probs=157.7
Q ss_pred eEEecCCcchHHHHHHHHHHHHH------------------------HHHHHHhHHHHHHHHHHHHHHHHHHHHhhcccc
Q psy7272 10 QTVAPASVIAEEAVDQLQASEKL------------------------IAELNETWEEKLKRTEEIRIQREAVFAEMGVAV 65 (275)
Q Consensus 10 ~~~~~~~~~~~~~~~~L~e~E~L------------------------~~el~~t~EE~L~~~e~~~~~r~~~~t~~~~~~ 65 (275)
-+|+.+|.|.||+.|-|.-.+.- =+....+--|.++.++.+...|.+|.|-||
T Consensus 184 vKVSfLELYNEEl~DLLa~~~~~~~~~~~k~~~~~~~~kggV~vkGlEEi~V~~A~ei~klLekGs~kRrtAaTl~N--- 260 (1041)
T KOG0243|consen 184 VKVSFLELYNEELTDLLASEDTSDKKLRIKDDSTIVDGKGGVIVKGLEEIIVTNADEIYKLLEKGSKKRRTAATLMN--- 260 (1041)
T ss_pred EEEEehhhhhHHHHHhcCCccccccccccccCCcccCCcCcEEEecceeeeecchhHHHHHHHhhhhHhHHHHHHhh---
Confidence 36788899999999988765542 122334457799999999999999999998
Q ss_pred ccCCceeeEEeee--eeeecCCCCcceeEeeeEEeeccCcccccccCccccccccccccccchhhHHHHHHHhhhcccCC
Q psy7272 66 KEDGNTVGVFSPQ--KAVDDMTDLTTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEITPHL 143 (275)
Q Consensus 66 ~~ssrsh~if~i~--~~~~~~~~~~~~~~s~l~lvDLAGSEr~~~~~~~~~~~~E~~~IN~SL~~Lg~vi~al~~~~~~l 143 (275)
.+|||||+||+|. ++.....+..-.+.||||||||||||...++|+.+.|.+|+..||+||++||+||.||.+..+|+
T Consensus 261 ~~SSRSHsIFsItvhike~t~~geelvK~GKLNLVDLAGSENI~RSGA~~~RArEAG~INqSLLTLGRVInALVe~s~HI 340 (1041)
T KOG0243|consen 261 DQSSRSHSIFSITVHIKENTPEGEELVKIGKLNLVDLAGSENISRSGARNGRAREAGEINQSLLTLGRVINALVEHSGHI 340 (1041)
T ss_pred hhccccceEEEEEEEEecCCCcchhhHhhcccceeeccccccccccccccchhHHhhhhhHHHHHHHHHHHHHHccCCCC
Confidence 6699999999984 45555566677888999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCcceeEEEeeccccccCCCCCCCCCCcceeeecCCcccccceEEEEeCCEEEEEeCCCCceEECCeeec
Q psy7272 144 VNLNEDPFMSECLIYYIKDGRTKVGSAESNLPQESQDIQLSGSHIKTEHCTFENVEGVVTLIPFQEALCYVNGRQIS 220 (275)
Q Consensus 144 ~~l~~~P~r~s~Lt~~L~~~~t~IGr~~~~~~~~~~dI~L~~~~Is~~Hc~I~~~e~~vtL~~~s~a~t~VNG~~I~ 220 (275)
|||+|+||++|||+++ |+..+.++ ++|.+.... .+++..||+++.+|+.+.|+-.++
T Consensus 341 ------PYRESKLTRLLQDSLG--GkTKT~iI---ATiSPa~~~---------lEETlSTLEYA~RAKnIkNKPevN 397 (1041)
T KOG0243|consen 341 ------PYRESKLTRLLQDSLG--GKTKTCII---ATISPAKHN---------LEETLSTLEYAHRAKNIKNKPEVN 397 (1041)
T ss_pred ------CchHHHHHHHHHHHhC--CCceeEEE---EEeCCCccc---------HHHHHHHHHHHHHhhhccCCCccc
Confidence 9999999999999999 98888544 444332222 238888999999999999997776
No 5
>KOG0240|consensus
Probab=99.95 E-value=6.4e-29 Score=236.68 Aligned_cols=162 Identities=29% Similarity=0.369 Sum_probs=135.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHhhccccccCCceeeEEeeeeeeecCCCCcceeEeeeEEeeccCcccccccCccccc
Q psy7272 36 LNETWEEKLKRTEEIRIQREAVFAEMGVAVKEDGNTVGVFSPQKAVDDMTDLTTEKVSKISLVDLAGSERADSTGAKGTR 115 (275)
Q Consensus 36 l~~t~EE~L~~~e~~~~~r~~~~t~~~~~~~~ssrsh~if~i~~~~~~~~~~~~~~~s~l~lvDLAGSEr~~~~~~~~~~ 115 (275)
...+.+|.+..++.+..+|+.+.|.|| .+|||||.||+|++.+..... ...+.|+|.||||||||+.+++|+.|.-
T Consensus 177 ~v~s~d~v~~~i~~g~~nr~va~t~mn---~~sSRSHsIF~i~VkQ~n~e~-~~~~~gkLyLVDLaGSEkvsKtga~g~v 252 (607)
T KOG0240|consen 177 FVSSPDEVLDVIDEGKSNRHVAVTNMN---EHSSRSHSIFLIHVKQENVED-KRKLSGKLYLVDLAGSEKVSKTGAEGAV 252 (607)
T ss_pred EecCHHHHHHHHhcccccchhhhcccc---ccccccceEEEEEEEeccccc-hhhccccEEEEEcccccccCCCCccchh
Confidence 445678999999999999999999998 679999999999876655443 5578899999999999999999999999
Q ss_pred cccccccccchhhHHHHHHHhhhc-ccCCcCCCCCCCCcceeEEEeeccccccCCCCCCCCCCcceeeecCCcccccceE
Q psy7272 116 LKEGANINKSLTTLGKVISALAEI-TPHLVNLNEDPFMSECLIYYIKDGRTKVGSAESNLPQESQDIQLSGSHIKTEHCT 194 (275)
Q Consensus 116 ~~E~~~IN~SL~~Lg~vi~al~~~-~~~l~~l~~~P~r~s~Lt~~L~~~~t~IGr~~~~~~~~~~dI~L~~~~Is~~Hc~ 194 (275)
+.|+++||+||++||+||.||+++ +.|+ |||+|+||++|++.++ |++.+..+ ...+|+-
T Consensus 253 leEaK~INkSLsaLgnvI~aLa~g~~shi------pYRDSKLTRILqdSLG--GNsRTtlI------i~csPss------ 312 (607)
T KOG0240|consen 253 LEEAKNINKSLSALGNVINALAEGPKSHI------PYRDSKLTRILQDSLG--GNSRTTLI------ICCSPSS------ 312 (607)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCCCC------cchhhHHHHHHHHHhC--CCcceEEE------EecCCcc------
Confidence 999999999999999999999997 4455 9999999999999999 99887433 2222221
Q ss_pred EEEeCCEEEEEeCCCCceEECCeeecc
Q psy7272 195 FENVEGVVTLIPFQEALCYVNGRQISE 221 (275)
Q Consensus 195 I~~~e~~vtL~~~s~a~t~VNG~~I~~ 221 (275)
+...++..||.+..+|+++.|-..++.
T Consensus 313 ~n~~ET~STl~fg~rak~ikN~v~~n~ 339 (607)
T KOG0240|consen 313 LNEAETKSTLRFGNRAKTIKNTVWVNL 339 (607)
T ss_pred ccccccccchhhccccccccchhhhhh
Confidence 122377889999999999998877753
No 6
>PLN03188 kinesin-12 family protein; Provisional
Probab=99.94 E-value=3.9e-29 Score=255.26 Aligned_cols=192 Identities=30% Similarity=0.330 Sum_probs=151.8
Q ss_pred EEecCCcchHHHHHHHHHHH----------------HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccCCceeeE
Q psy7272 11 TVAPASVIAEEAVDQLQASE----------------KLIAELNETWEEKLKRTEEIRIQREAVFAEMGVAVKEDGNTVGV 74 (275)
Q Consensus 11 ~~~~~~~~~~~~~~~L~e~E----------------~L~~el~~t~EE~L~~~e~~~~~r~~~~t~~~~~~~~ssrsh~i 74 (275)
.|..++.|.|.+.|-|.... .|.+....+|++.++.+..+..+|.++.|.|| ..|||||+|
T Consensus 231 ~vSyLEIYNEkI~DLLsp~~k~L~IRED~kgGv~VeGLTEv~V~S~ED~l~LL~~G~~nR~tasT~mN---~~SSRSHaI 307 (1320)
T PLN03188 231 RCSFLEIYNEQITDLLDPSQKNLQIREDVKSGVYVENLTEEYVKTMKDVTQLLIKGLSNRRTGATSIN---AESSRSHSV 307 (1320)
T ss_pred EEEEEeeecCcceeccccccCCceEEEcCCCCeEeCCCeEEeCCCHHHHHHHHHHHhccceeccCCCC---CccCCCcee
Confidence 57778889999888886543 33445567999999999999999999999998 559999999
Q ss_pred Eeeeeeeec---CCCCcceeEeeeEEeeccCcccccccCccccccccccccccchhhHHHHHHHhhhcccCCcCCCCCCC
Q psy7272 75 FSPQKAVDD---MTDLTTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEITPHLVNLNEDPF 151 (275)
Q Consensus 75 f~i~~~~~~---~~~~~~~~~s~l~lvDLAGSEr~~~~~~~~~~~~E~~~IN~SL~~Lg~vi~al~~~~~~l~~l~~~P~ 151 (275)
|++.+.... ..+....+.|+|+|||||||||..++++.|.+++|+++||+||++||+||.+|++.+.. ....++||
T Consensus 308 FtI~Ves~~k~~~dg~ss~r~SkLnLVDLAGSER~kkTga~G~RLkEA~~INKSLsaLGnVI~ALae~Sq~-gk~~HIPY 386 (1320)
T PLN03188 308 FTCVVESRCKSVADGLSSFKTSRINLVDLAGSERQKLTGAAGDRLKEAGNINRSLSQLGNLINILAEISQT-GKQRHIPY 386 (1320)
T ss_pred EEEEEEEeecccCCCCcceEEEEEEEEECCCchhccccCcccHHHHHHHHHhHHHHHHHHHHHHHHHhhcc-CCCCcCCC
Confidence 998765432 23445567899999999999999999999999999999999999999999999974321 11234599
Q ss_pred CcceeEEEeeccccccCCCCCCCCCCcceeeecCCcccccceEEEEeCCEEEEEeCCCCceEECCeeec
Q psy7272 152 MSECLIYYIKDGRTKVGSAESNLPQESQDIQLSGSHIKTEHCTFENVEGVVTLIPFQEALCYVNGRQIS 220 (275)
Q Consensus 152 r~s~Lt~~L~~~~t~IGr~~~~~~~~~~dI~L~~~~Is~~Hc~I~~~e~~vtL~~~s~a~t~VNG~~I~ 220 (275)
|+|+||++|+++++ |++.+.++ ++|.+....+. ++..||+++++|+.+.|...++
T Consensus 387 RDSKLTrLLQDSLG--GNSKTvMI---a~VSPs~~~~e---------ETLSTLrFAsRAK~IKNkpvvN 441 (1320)
T PLN03188 387 RDSRLTFLLQESLG--GNAKLAMV---CAISPSQSCKS---------ETFSTLRFAQRAKAIKNKAVVN 441 (1320)
T ss_pred CcchHHHHHHHhcC--CCceEEEE---EecCCchhhHH---------HHHHHHHHHHHHhhcCccceec
Confidence 99999999999988 99887665 55555443333 6777888888777666665554
No 7
>KOG0242|consensus
Probab=99.94 E-value=7.8e-29 Score=247.46 Aligned_cols=162 Identities=31% Similarity=0.380 Sum_probs=136.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccCCceeeEEeeeeeeecCCCCcceeEeeeEEeeccCcccccccC
Q psy7272 31 KLIAELNETWEEKLKRTEEIRIQREAVFAEMGVAVKEDGNTVGVFSPQKAVDDMTDLTTEKVSKISLVDLAGSERADSTG 110 (275)
Q Consensus 31 ~L~~el~~t~EE~L~~~e~~~~~r~~~~t~~~~~~~~ssrsh~if~i~~~~~~~~~~~~~~~s~l~lvDLAGSEr~~~~~ 110 (275)
+|.++-..+|+|.++.+..+.++|.++.|++| ..|||||+||+|.+........ . +.|+|+|||||||||+.+++
T Consensus 172 gL~e~~v~s~e~~~~ll~~g~~~R~~g~T~~N---~~SSRSHaIl~i~i~s~~~~~~-~-~~s~L~lIDLAGSERas~T~ 246 (675)
T KOG0242|consen 172 GLTEETVSSREELLELLQKGNKNRTTGETNLN---EQSSRSHAILRITVESRGREAS-S-RVSKLNLIDLAGSERASRTG 246 (675)
T ss_pred CCeeecCCCHHHHHHHHHHhhccCcccccccc---cccchhhheeeEEEEecccccc-c-hhheehhhhhhhhhhhhhhh
Confidence 45778889999999999999999999999998 5599999999987665554443 2 78999999999999999999
Q ss_pred ccccccccccccccchhhHHHHHHHhhhcc-cCCcCCCCCCCCcceeEEEeeccccccCCCCCCCCCCcceeeecCCccc
Q psy7272 111 AKGTRLKEGANINKSLTTLGKVISALAEIT-PHLVNLNEDPFMSECLIYYIKDGRTKVGSAESNLPQESQDIQLSGSHIK 189 (275)
Q Consensus 111 ~~~~~~~E~~~IN~SL~~Lg~vi~al~~~~-~~l~~l~~~P~r~s~Lt~~L~~~~t~IGr~~~~~~~~~~dI~L~~~~Is 189 (275)
+.|.|++||++||+||++||.||.+|+++. ++ ++|||+|+|||+||++++ |++.+.++ |+|.+....+.
T Consensus 247 ~~G~RlkEG~~INrSLlaLgtVI~~Ls~~~~~~-----hipYRDSKLTRiLq~sLg--Gn~rt~~I---~tisp~~~~~~ 316 (675)
T KOG0242|consen 247 NEGVRLKEGAHINRSLLALGTVINKLSEGKRPR-----HIPYRDSKLTRLLQDSLG--GNARTAII---ATISPSSSHYE 316 (675)
T ss_pred ccceeccccchhhHHHHHHHHHHHHHccccccC-----CCCccccHHHHhchhhcC--CCccEEEE---EEeCchhhHHH
Confidence 999999999999999999999999999872 33 449999999999999998 99999887 77777665554
Q ss_pred ccceEEEEeCCEEEEEeCCCCceEECC
Q psy7272 190 TEHCTFENVEGVVTLIPFQEALCYVNG 216 (275)
Q Consensus 190 ~~Hc~I~~~e~~vtL~~~s~a~t~VNG 216 (275)
++..||.++++|+-..|-
T Consensus 317 ---------eT~nTL~fAsrak~i~~~ 334 (675)
T KOG0242|consen 317 ---------ETKNTLKFASRAKEITTK 334 (675)
T ss_pred ---------HHHHHHHHHHHhhhcccc
Confidence 566677777776544433
No 8
>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second
Probab=99.93 E-value=8.8e-28 Score=223.95 Aligned_cols=165 Identities=30% Similarity=0.425 Sum_probs=131.4
Q ss_pred EEecCCcchHHHHHHHHHH----------------HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccCCceeeE
Q psy7272 11 TVAPASVIAEEAVDQLQAS----------------EKLIAELNETWEEKLKRTEEIRIQREAVFAEMGVAVKEDGNTVGV 74 (275)
Q Consensus 11 ~~~~~~~~~~~~~~~L~e~----------------E~L~~el~~t~EE~L~~~e~~~~~r~~~~t~~~~~~~~ssrsh~i 74 (275)
.|.++|.|.|.+.|.|... +.|.+....+|+|.++.+..+.++|.++.|.+| .+|||||+|
T Consensus 137 ~~S~~EIyne~v~DLL~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n---~~SSRSH~i 213 (337)
T cd01373 137 KCSFLEIYNEQITDLLDPTSRNLKIREDIKKGVYVENLTEEYVSSYEDVYQVLLKGLSNRKVAATSMN---SESSRSHAV 213 (337)
T ss_pred EEEEEeecCCEeeeCCCCCCCCceEEECCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhccCcccCcCC---CCCCCccEE
Confidence 4566788888877777532 233344557899999999999999999999998 569999999
Q ss_pred EeeeeeeecC-CCCcceeEeeeEEeeccCcccccccCccccccccccccccchhhHHHHHHHhhhcccCCcCCCCCCCCc
Q psy7272 75 FSPQKAVDDM-TDLTTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEITPHLVNLNEDPFMS 153 (275)
Q Consensus 75 f~i~~~~~~~-~~~~~~~~s~l~lvDLAGSEr~~~~~~~~~~~~E~~~IN~SL~~Lg~vi~al~~~~~~l~~l~~~P~r~ 153 (275)
|++.+..... ......+.|+|+|||||||||..++++.|.+++|+++||+||++|++||.+|++.... ...++|||+
T Consensus 214 ~~i~v~~~~~~~~~~~~~~s~l~~VDLAGSEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~aL~~~~~~--~~~~ipyR~ 291 (337)
T cd01373 214 FTCTIESWEKKASSTNIRTSRLNLVDLAGSERQKDDGAEGVRLKEAKNINKSLSTLGHVIMALVDVAHG--KQRHVPYRD 291 (337)
T ss_pred EEEEEEEeecCCCCCcEEEEEEEEEECCCCCcccccCCccHhhhhhccccHHHHHHHHHHHHHHhhccC--CCCccCCcc
Confidence 9997654333 2333567899999999999999999999999999999999999999999999864311 134459999
Q ss_pred ceeEEEeeccccccCCCCCCCCCCcceeeecC
Q psy7272 154 ECLIYYIKDGRTKVGSAESNLPQESQDIQLSG 185 (275)
Q Consensus 154 s~Lt~~L~~~~t~IGr~~~~~~~~~~dI~L~~ 185 (275)
|+||++|++.++ |++.+.++ ++|.+..
T Consensus 292 SkLT~lL~dsLg--gns~t~~I---~~vsP~~ 318 (337)
T cd01373 292 SKLTFLLRDSLG--GNAKTTII---ANVSPSS 318 (337)
T ss_pred cHHHHHHHHhcC--CCceEEEE---EEECCCc
Confidence 999999999988 88877555 5554443
No 9
>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, a
Probab=99.93 E-value=1.4e-27 Score=223.27 Aligned_cols=144 Identities=27% Similarity=0.284 Sum_probs=118.8
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccCCceeeEEeeeeeeecCCC-------CcceeEeeeEEeeccCcccc
Q psy7272 34 AELNETWEEKLKRTEEIRIQREAVFAEMGVAVKEDGNTVGVFSPQKAVDDMTD-------LTTEKVSKISLVDLAGSERA 106 (275)
Q Consensus 34 ~el~~t~EE~L~~~e~~~~~r~~~~t~~~~~~~~ssrsh~if~i~~~~~~~~~-------~~~~~~s~l~lvDLAGSEr~ 106 (275)
+....+|+|.++....+.++|.++.|.+| .+|||||+||++.+....... ......|+|+|||||||||.
T Consensus 178 ~~~v~s~~e~~~~l~~g~~~R~~~~t~~N---~~SSRSH~i~~i~v~~~~~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~ 254 (345)
T cd01368 178 EVEVSSTEEAREVFKRGQKNRRVAGTKLN---RESSRSHSVFTIKLVQAPGDSDGDVDQDKDQITVSQLSLVDLAGSERT 254 (345)
T ss_pred EEEeCCHHHHHHHHHHhhccceeccccCc---CCCCCceEEEEEEEEEeccCcccccccCCCceEEEEEEEEeccccccc
Confidence 33456899999999999999999999998 559999999999765443321 24567899999999999999
Q ss_pred cccCccccccccccccccchhhHHHHHHHhhhcccCCcCCCCCCCCcceeEEEeeccccccCCCCCCCCCCcceeeecC
Q psy7272 107 DSTGAKGTRLKEGANINKSLTTLGKVISALAEITPHLVNLNEDPFMSECLIYYIKDGRTKVGSAESNLPQESQDIQLSG 185 (275)
Q Consensus 107 ~~~~~~~~~~~E~~~IN~SL~~Lg~vi~al~~~~~~l~~l~~~P~r~s~Lt~~L~~~~t~IGr~~~~~~~~~~dI~L~~ 185 (275)
.++++.|.+++|+.+||+||++|++||.+|++...+.....++|||+|+||++|++.++ |++.+.++ ++|.+..
T Consensus 255 ~~~~~~g~~~~E~~~IN~SL~aL~~vi~aL~~~~~~~~~~~~iPyR~SkLT~lL~~~l~--g~s~t~~I---~~vsp~~ 328 (345)
T cd01368 255 SRTQNTGERLKEAGNINTSLMTLGKCIEVLRENQLSGSTNKMVPYRDSKLTHLFQNYFD--GEGKARMI---VNVNPCA 328 (345)
T ss_pred ccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhcccCCCCcCCCcCCHHHHHHHHhcC--CCCeEEEE---EEeCCch
Confidence 99999999999999999999999999999998544333445669999999999999987 88877555 5554443
No 10
>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a sec
Probab=99.93 E-value=2.5e-27 Score=220.98 Aligned_cols=141 Identities=31% Similarity=0.370 Sum_probs=118.1
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccCCceeeEEeeeeeeecCC--CCcceeEeeeEEeeccCcccccccCc
Q psy7272 34 AELNETWEEKLKRTEEIRIQREAVFAEMGVAVKEDGNTVGVFSPQKAVDDMT--DLTTEKVSKISLVDLAGSERADSTGA 111 (275)
Q Consensus 34 ~el~~t~EE~L~~~e~~~~~r~~~~t~~~~~~~~ssrsh~if~i~~~~~~~~--~~~~~~~s~l~lvDLAGSEr~~~~~~ 111 (275)
+....+|+|.++.++.+.++|.++.|.|| ..|||||+||++.+...... .......|+|+|||||||||..+++.
T Consensus 177 ~~~v~s~~e~~~~l~~g~~~R~~~~t~~n---~~SSRSH~i~~i~i~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~~~~ 253 (338)
T cd01370 177 EHQPKSAEEILELLMKGNRNRTQEPTEAN---ATSSRSHAVLQITVRQKDRTASINQQVRIGKLSLIDLAGSERASATNN 253 (338)
T ss_pred EEEeCCHHHHHHHHHHHHhhccccccccc---CccCcceEEEEEEEEEEecCCCCCCcEEEEEEEEEECCCCccccccCC
Confidence 34457899999999999999999999998 55999999999976655443 24557789999999999999999999
Q ss_pred cccccccccccccchhhHHHHHHHhhhcccCCcCCCCCCCCcceeEEEeeccccccCCCCCCCCCCcceeeecC
Q psy7272 112 KGTRLKEGANINKSLTTLGKVISALAEITPHLVNLNEDPFMSECLIYYIKDGRTKVGSAESNLPQESQDIQLSG 185 (275)
Q Consensus 112 ~~~~~~E~~~IN~SL~~Lg~vi~al~~~~~~l~~l~~~P~r~s~Lt~~L~~~~t~IGr~~~~~~~~~~dI~L~~ 185 (275)
.|.+++|+++||+||++|++||.+|++... ...++|||+|+||++|++.++ |++.+.++ ++|.+..
T Consensus 254 ~g~~~~E~~~IN~SL~~L~~vi~~L~~~~~---~~~~ipyR~SkLT~lL~d~Lg--gn~~t~~I---~~vsp~~ 319 (338)
T cd01370 254 RGQRLKEGANINRSLLALGNCINALVDGKK---KNKHIPYRDSKLTRLLKDSLG--GNCKTVMI---ANISPSS 319 (338)
T ss_pred CCccccccchhhHHHHHHHHHHHHHHhccC---CCCcCCCcCCHHHHHHHHhcC--CCCeEEEE---EEeCCch
Confidence 999999999999999999999999998772 112339999999999999988 88777555 5555443
No 11
>KOG0247|consensus
Probab=99.92 E-value=2.7e-26 Score=223.72 Aligned_cols=163 Identities=26% Similarity=0.268 Sum_probs=128.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhccccccCCceeeEEeeeeeeecCC-CCcceeEeeeEEeeccCcccccccCccccccc
Q psy7272 39 TWEEKLKRTEEIRIQREAVFAEMGVAVKEDGNTVGVFSPQKAVDDMT-DLTTEKVSKISLVDLAGSERADSTGAKGTRLK 117 (275)
Q Consensus 39 t~EE~L~~~e~~~~~r~~~~t~~~~~~~~ssrsh~if~i~~~~~~~~-~~~~~~~s~l~lvDLAGSEr~~~~~~~~~~~~ 117 (275)
+-||+|+....+.+.|..+.|-.|.+ |||||+||+|.+.+.... +.....+|.|+|||||||||..+++++|.||+
T Consensus 279 sseEA~~l~~lGqk~r~~asT~lN~~---SSRSHsVFtIkl~q~~~~~~s~~i~vSqlsLvDLAGSERt~rtq~sG~RLr 355 (809)
T KOG0247|consen 279 SSEEALELFQLGQKRRRVASTKLNAN---SSRSHSVFTIKLVQAPRSQDSNQITVSQLSLVDLAGSERTNRTQNSGERLR 355 (809)
T ss_pred cHHHHHHHHHHHHhhhhhhheecccc---ccccceeEEEEeeecccccccCceeEEeeeeeecccchhcccccchhHHHH
Confidence 45999999999999999999999855 999999999987665555 55667889999999999999999999999999
Q ss_pred cccccccchhhHHHHHHHhhhcccCCcCCCCCCCCcceeEEEeeccccccCCCCCCCCCCcceeeecCCcccccceEEEE
Q psy7272 118 EGANINKSLTTLGKVISALAEITPHLVNLNEDPFMSECLIYYIKDGRTKVGSAESNLPQESQDIQLSGSHIKTEHCTFEN 197 (275)
Q Consensus 118 E~~~IN~SL~~Lg~vi~al~~~~~~l~~l~~~P~r~s~Lt~~L~~~~t~IGr~~~~~~~~~~dI~L~~~~Is~~Hc~I~~ 197 (275)
||+|||.||++||+||.+|.+.+..-.+ ..+|||+|+++++++..+. |...- +.|+.-+|... .+
T Consensus 356 EagNINtSLmTLg~Cie~LR~nqk~ks~-~~VPyRdSKLThlfq~~f~--G~gki------~MIV~vnp~~e------~Y 420 (809)
T KOG0247|consen 356 EAGNINTSLMTLRRCIDVLRENQKSKSQ-KIVPYRDSKLTHLFKNYFD--GKGKI------RMIVCVNPKAE------DY 420 (809)
T ss_pred hhccccHHHHHHHHHHHHHHHHhhhhcc-ccCcchHHHHHHHHHHhcC--CCCcE------EEEEecCCchh------hH
Confidence 9999999999999999999987765544 7789999999999999988 54433 55555444322 23
Q ss_pred eCCEEEEEeCCCCceEECCeee
Q psy7272 198 VEGVVTLIPFQEALCYVNGRQI 219 (275)
Q Consensus 198 ~e~~vtL~~~s~a~t~VNG~~I 219 (275)
++....+.+++-+...++-.++
T Consensus 421 dEnl~vlkFaeiaq~v~v~~~~ 442 (809)
T KOG0247|consen 421 DENLNVLKFAEIAQEVEVARPV 442 (809)
T ss_pred HHHHHHHHHHHhcccccccCcc
Confidence 3444445555444444444444
No 12
>KOG0239|consensus
Probab=99.92 E-value=4.4e-27 Score=234.37 Aligned_cols=172 Identities=28% Similarity=0.303 Sum_probs=138.5
Q ss_pred eEEecCCcchHHHHHHHHHHH------------------HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccCCce
Q psy7272 10 QTVAPASVIAEEAVDQLQASE------------------KLIAELNETWEEKLKRTEEIRIQREAVFAEMGVAVKEDGNT 71 (275)
Q Consensus 10 ~~~~~~~~~~~~~~~~L~e~E------------------~L~~el~~t~EE~L~~~e~~~~~r~~~~t~~~~~~~~ssrs 71 (275)
.+|.|.|.|.|.+.|-|.... .+...-..+-+|.+..++.+.++|.++.|.+| ++||||
T Consensus 443 ~~~s~~EIYNe~i~DlL~~~~~~~k~~I~~~~~~~~~V~~~t~~~V~s~~~v~~ll~~g~~nRsv~~T~~N---e~SSRS 519 (670)
T KOG0239|consen 443 KTVSMLEIYNEAIRDLLSDESYVGKLEIVDDAEGNLMVPLLTVIKVGSSEEVDILLEIGLSNRSVASTASN---ERSSRS 519 (670)
T ss_pred eeeehhHHHHHHHHHhccccccccceeEEEcCCCceecccceEEecCCHHHHHHHHHHhhccccccccccc---hhhhcc
Confidence 456677777777777665542 11122233457788888899999999999997 889999
Q ss_pred eeEEeeeeeeecCCCCcceeEeeeEEeeccCcccccccCccccccccccccccchhhHHHHHHHhhhcccCCcCCCCCCC
Q psy7272 72 VGVFSPQKAVDDMTDLTTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEITPHLVNLNEDPF 151 (275)
Q Consensus 72 h~if~i~~~~~~~~~~~~~~~s~l~lvDLAGSEr~~~~~~~~~~~~E~~~IN~SL~~Lg~vi~al~~~~~~l~~l~~~P~ 151 (275)
|+||++.+... .........+.|+|||||||||+.+++++|+|++|+.+||+||++||.||.||+...+|+ ||
T Consensus 520 H~v~~v~v~g~-~~~t~~~~~g~l~LVDLAGSER~~~s~~tG~RlkE~Q~INkSLS~LgdVi~AL~~k~~Hi------Py 592 (670)
T KOG0239|consen 520 HLVFRVRIRGI-NELTGIRVTGVLNLVDLAGSERVSKSGVTGERLKEAQNINKSLSALGDVISALASKRSHI------PY 592 (670)
T ss_pred ceEEEEEEecc-ccCcccccccceeEeecccCcccCcCCCchhhhHHHHHhchhhhhhHHHHHHHhhcCCCC------cc
Confidence 99999877544 233345567999999999999999999999999999999999999999999999999998 99
Q ss_pred CcceeEEEeeccccccCCCCCCCCCCcceeeecCCcccccceEEE
Q psy7272 152 MSECLIYYIKDGRTKVGSAESNLPQESQDIQLSGSHIKTEHCTFE 196 (275)
Q Consensus 152 r~s~Lt~~L~~~~t~IGr~~~~~~~~~~dI~L~~~~Is~~Hc~I~ 196 (275)
|+|+|||+|+++++ |.+.+.|. ..|.+....+...-|.+.
T Consensus 593 RNSKLT~lLq~sLG--G~sKTLmf---v~isP~~~~~~Etl~sL~ 632 (670)
T KOG0239|consen 593 RNSKLTQLLQDSLG--GDSKTLMF---VNISPAAAALFETLCSLR 632 (670)
T ss_pred cccchHHHhHhhhC--CccceeeE---EEeCccHHHHhhhhhccc
Confidence 99999999999999 99988776 666666666664444443
No 13
>cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil d
Probab=99.91 E-value=7.5e-26 Score=212.07 Aligned_cols=163 Identities=29% Similarity=0.378 Sum_probs=132.6
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHhhccccccCCceeeEEeeeeeeecC--CCCcceeEeeeEEeeccCcccccccCcc
Q psy7272 35 ELNETWEEKLKRTEEIRIQREAVFAEMGVAVKEDGNTVGVFSPQKAVDDM--TDLTTEKVSKISLVDLAGSERADSTGAK 112 (275)
Q Consensus 35 el~~t~EE~L~~~e~~~~~r~~~~t~~~~~~~~ssrsh~if~i~~~~~~~--~~~~~~~~s~l~lvDLAGSEr~~~~~~~ 112 (275)
....+|+|.++.+..+.++|.++.|.+| ..|||||+||++.+..... .+......|+|+|||||||||..+.++.
T Consensus 186 ~~v~s~~e~~~~l~~g~~~R~~~~t~~n---~~sSRSH~i~~i~i~~~~~~~~~~~~~~~s~l~~VDLAGsE~~~~~~~~ 262 (352)
T cd01364 186 ITVNNANEGLKLLEKGSAKRKTAATLMN---DQSSRSHSIFSITIHIKETTISGEELVKIGKLNLVDLAGSENIGRSGAE 262 (352)
T ss_pred EEeCCHHHHHHHHHHHhhhcccccCcCC---CCCCCCceEEEEEEEEeccCCCCCccEEEEEEEEEECCCccccccccCc
Confidence 3456899999999999999999999998 5599999999987654433 2344567899999999999999999999
Q ss_pred ccccccccccccchhhHHHHHHHhhhcccCCcCCCCCCCCcceeEEEeeccccccCCCCCCCCCCcceeeecCCcccccc
Q psy7272 113 GTRLKEGANINKSLTTLGKVISALAEITPHLVNLNEDPFMSECLIYYIKDGRTKVGSAESNLPQESQDIQLSGSHIKTEH 192 (275)
Q Consensus 113 ~~~~~E~~~IN~SL~~Lg~vi~al~~~~~~l~~l~~~P~r~s~Lt~~L~~~~t~IGr~~~~~~~~~~dI~L~~~~Is~~H 192 (275)
+.+++|+..||+||++|++||.+|+++..|+ |||+|+||++|++.++ |++.+.++ ++|.+....
T Consensus 263 ~~~~~e~~~iN~SL~~L~~vi~al~~~~~~v------pyR~S~LT~lL~~~Lg--g~s~t~~I---~~vsp~~~~----- 326 (352)
T cd01364 263 NKRAREAGNINQSLLTLGRVINALVEKSPHI------PYRESKLTRLLQDSLG--GRTKTSII---ATISPASIN----- 326 (352)
T ss_pred chhhHHHhhhhHHHHHHHHHHHHHHcCCCCC------CCcccHHHHHHHHhcC--CCceEEEE---EEeCCCccc-----
Confidence 9999999999999999999999999988776 9999999999999987 88766444 444332222
Q ss_pred eEEEEeCCEEEEEeCCCCceEECCeeec
Q psy7272 193 CTFENVEGVVTLIPFQEALCYVNGRQIS 220 (275)
Q Consensus 193 c~I~~~e~~vtL~~~s~a~t~VNG~~I~ 220 (275)
+.++..||+++.+++.+.|.-.|+
T Consensus 327 ----~~eTl~TL~~a~~~~~i~n~P~~n 350 (352)
T cd01364 327 ----LEETLSTLEYAHRAKNIKNKPEVN 350 (352)
T ss_pred ----HHHHHHHHHHHHHHhhccCccccC
Confidence 236667888888887777765543
No 14
>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through
Probab=99.90 E-value=1.8e-25 Score=206.92 Aligned_cols=128 Identities=26% Similarity=0.338 Sum_probs=112.2
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccCCceeeEEeeeeeeecCCCCcceeEeeeEEeeccCcccccccCccc
Q psy7272 34 AELNETWEEKLKRTEEIRIQREAVFAEMGVAVKEDGNTVGVFSPQKAVDDMTDLTTEKVSKISLVDLAGSERADSTGAKG 113 (275)
Q Consensus 34 ~el~~t~EE~L~~~e~~~~~r~~~~t~~~~~~~~ssrsh~if~i~~~~~~~~~~~~~~~s~l~lvDLAGSEr~~~~~~~~ 113 (275)
+....+|+|.++....+.++|.++.|.+| ..|||||+||++.+..... .....|+|+|||||||||..+++.+|
T Consensus 168 ~~~v~s~~e~~~~l~~~~~~R~~~~t~~n---~~SSRSH~i~~i~v~~~~~---~~~~~s~l~~VDLAGsE~~~~~~~~g 241 (319)
T cd01376 168 SKPIKSMAEFEEAYIPASKNRTVAATKLN---DNSSRSHAVLRIKVTQPAS---NIQLEGKLNLIDLAGSEDNRRTGNEG 241 (319)
T ss_pred EEEeCCHHHHHHHHHHHHhhhccccCcCC---CccCCCeEEEEEEEEEECC---CceEEEEEEEEECCCCCcccccCCcc
Confidence 33467889999999999999999999997 5599999999997655432 23678999999999999999999999
Q ss_pred cccccccccccchhhHHHHHHHhhhcccCCcCCCCCCCCcceeEEEeeccccccCCCCCCCC
Q psy7272 114 TRLKEGANINKSLTTLGKVISALAEITPHLVNLNEDPFMSECLIYYIKDGRTKVGSAESNLP 175 (275)
Q Consensus 114 ~~~~E~~~IN~SL~~Lg~vi~al~~~~~~l~~l~~~P~r~s~Lt~~L~~~~t~IGr~~~~~~ 175 (275)
.+++|+.+||+||++||+||.+|+.+.+|+ |||+|+||++|++.++ |++.+.++
T Consensus 242 ~~~~e~~~iN~Sl~~L~~vi~aL~~~~~~i------pyr~S~LT~lL~~~L~--g~s~t~~i 295 (319)
T cd01376 242 IRLKESAAINSSLFVLSKVVDALNKGLPRI------PYRESKLTRLLQDSLG--GGSRCIMV 295 (319)
T ss_pred chhhhhhhhhhhHHHHHHHHHHHhcCCCcC------CCccCHHHHHHHHhcC--CCccEEEE
Confidence 999999999999999999999999987777 9999999999999988 88766554
No 15
>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.
Probab=99.90 E-value=1.4e-25 Score=210.54 Aligned_cols=191 Identities=37% Similarity=0.422 Sum_probs=144.8
Q ss_pred eEEecCCcchHHHHHHHHHHH-------------------HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccCCc
Q psy7272 10 QTVAPASVIAEEAVDQLQASE-------------------KLIAELNETWEEKLKRTEEIRIQREAVFAEMGVAVKEDGN 70 (275)
Q Consensus 10 ~~~~~~~~~~~~~~~~L~e~E-------------------~L~~el~~t~EE~L~~~e~~~~~r~~~~t~~~~~~~~ssr 70 (275)
..+.++|.+.|.+.|.|.... .|.+....+|+|.++....+.++|.++.|.+| .+|||
T Consensus 139 v~~S~~EIy~e~v~DLL~~~~~~~~~l~i~~~~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n---~~SSR 215 (356)
T cd01365 139 VEVSYMEIYNEKVRDLLNPKKKNKGNLKVREHPVLGPYVEDLSKVAVTSYEDIQNLLEEGNKSRTTASTNMN---DTSSR 215 (356)
T ss_pred EEEEEEEEECCeeeeCCCCCccCCcCceEEECCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhcccccCCCCC---CCcCC
Confidence 345666666666666665442 23344567899999999999999999999997 55999
Q ss_pred eeeEEeeeeeeecCC---CCcceeEeeeEEeeccCcccccccCccccccccccccccchhhHHHHHHHhhhcccC--CcC
Q psy7272 71 TVGVFSPQKAVDDMT---DLTTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEITPH--LVN 145 (275)
Q Consensus 71 sh~if~i~~~~~~~~---~~~~~~~s~l~lvDLAGSEr~~~~~~~~~~~~E~~~IN~SL~~Lg~vi~al~~~~~~--l~~ 145 (275)
||+||++.+...... .......|+|+|||||||||...++..|.+++|+.+||+||++|++||.+|++.... ...
T Consensus 216 SH~i~~l~v~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~~~~~~~~~~E~~~IN~SL~aL~~vi~~l~~~~~~~~~~~ 295 (356)
T cd01365 216 SHAVFTIVLTQKKLDKETDLTTEKVSKISLVDLAGSERASSTGAEGDRLKEGSNINKSLTTLGKVISALADNSSAKSKKK 295 (356)
T ss_pred ceEEEEEEEEEEecccCCCCCceEEEEEEeeecccccccccccccchhhHHHHHHhHHHHHHHHHHHHHHhcccccccCC
Confidence 999999976554433 355678899999999999999999999999999999999999999999999975422 122
Q ss_pred CCCCCCCcceeEEEeeccccccCCCCCCCCCCcceeeecCCcccccceEEEEeCCEEEEEeCCCCceEECCe
Q psy7272 146 LNEDPFMSECLIYYIKDGRTKVGSAESNLPQESQDIQLSGSHIKTEHCTFENVEGVVTLIPFQEALCYVNGR 217 (275)
Q Consensus 146 l~~~P~r~s~Lt~~L~~~~t~IGr~~~~~~~~~~dI~L~~~~Is~~Hc~I~~~e~~vtL~~~s~a~t~VNG~ 217 (275)
..++|||+|+||++|++.++ |++.+.++ ++|.+..... .++..||+++++++.+.|..
T Consensus 296 ~~~ipyR~SkLT~lL~~~lg--g~s~t~~I---~~vsp~~~~~---------~eTl~tL~fa~~~~~i~~~~ 353 (356)
T cd01365 296 SSFIPYRDSVLTWLLKENLG--GNSKTAMI---ATISPADINY---------EETLSTLRYADRAKKIVNVA 353 (356)
T ss_pred CCcCCCcCcHHHHHHHHhcC--CCceEEEE---EEeCCCcccH---------HHHHHHHHHHHHHhhccCcc
Confidence 34559999999999999987 88766554 4444433232 25566777776666555543
No 16
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=99.90 E-value=9.3e-25 Score=187.43 Aligned_cols=121 Identities=38% Similarity=0.515 Sum_probs=103.5
Q ss_pred HHHHHHHHHHHHHHHHHhhccccccCCceeeEEeeeeeeecCC--CCcceeEeeeEEeeccCcccccccCcccccccccc
Q psy7272 43 KLKRTEEIRIQREAVFAEMGVAVKEDGNTVGVFSPQKAVDDMT--DLTTEKVSKISLVDLAGSERADSTGAKGTRLKEGA 120 (275)
Q Consensus 43 ~L~~~e~~~~~r~~~~t~~~~~~~~ssrsh~if~i~~~~~~~~--~~~~~~~s~l~lvDLAGSEr~~~~~~~~~~~~E~~ 120 (275)
.+...+.+.++|..+.|.+| ..|||||+||+|+....... .......|+|+|||||||||..+++..+++++|++
T Consensus 58 ~~~ll~~g~~~R~~~~t~~N---~~SSRsH~i~~i~v~~~~~~~~~~~~~~~s~l~lVDLAGsE~~~~~~~~~~~~~e~~ 134 (186)
T cd01363 58 VIDLMDKGNANRTTAATAMN---EHSSRSHSVFRIHFGGKNALASATEQPKVGKINLVDLAGSERIDFSGAEGSRLTETA 134 (186)
T ss_pred HHHHHhhccccccccccCCC---CccCcccEEEEEEEEEeecCCCCccceeeeeEEEEEccccccccccCCchhhHHHHH
Confidence 55666777778989999888 45999999999976544332 23567789999999999999999999999999999
Q ss_pred ccccchhhHHHHHHHhhhcccCCcCCCCCCCCcceeEEEeeccccccCCCCCCC
Q psy7272 121 NINKSLTTLGKVISALAEITPHLVNLNEDPFMSECLIYYIKDGRTKVGSAESNL 174 (275)
Q Consensus 121 ~IN~SL~~Lg~vi~al~~~~~~l~~l~~~P~r~s~Lt~~L~~~~t~IGr~~~~~ 174 (275)
.||+||++|++||.+|+++..|+ |||+|+||++|++.++ |++.+.+
T Consensus 135 ~in~sl~~L~~~i~~l~~~~~~v------pyr~SkLT~lL~~~L~--g~~~t~~ 180 (186)
T cd01363 135 NINKSLSTLGNVISALAERDSHV------PYRESKLTRLLQDSLG--GNSRTLM 180 (186)
T ss_pred HHhhHHHHHHHHHHHHhcCCCCC------CCcccHHHHHHHHhcC--CCCeEEE
Confidence 99999999999999999987776 9999999999999987 8766533
No 17
>cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain
Probab=99.89 E-value=4.1e-25 Score=205.67 Aligned_cols=155 Identities=30% Similarity=0.380 Sum_probs=125.9
Q ss_pred eEEecCCcchHHHHHHHHHHH-----------------HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccCCcee
Q psy7272 10 QTVAPASVIAEEAVDQLQASE-----------------KLIAELNETWEEKLKRTEEIRIQREAVFAEMGVAVKEDGNTV 72 (275)
Q Consensus 10 ~~~~~~~~~~~~~~~~L~e~E-----------------~L~~el~~t~EE~L~~~e~~~~~r~~~~t~~~~~~~~ssrsh 72 (275)
..|.++|.+.|++.|-|.... .|.+....+|+|.+...+.+.++|..+.|.+| .+|||||
T Consensus 133 v~~S~~Eiy~e~v~DLL~~~~~~~l~i~~~~~~~~~v~~l~~~~v~s~~~~~~~l~~g~~~R~~~~t~~n---~~ssRSH 209 (333)
T cd01371 133 VRVSYLEIYNEEVRDLLGKDQKKKLELKERPDRGVYVKDLSMFVVKNAEEMDKLMTLGNKNRSVGATNMN---EDSSRSH 209 (333)
T ss_pred EEEEEEEeeCCeeeeCCCCCCCCceeEEEcCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhhCcccccccc---CCCCCCc
Confidence 345556666666666554322 22334467899999999999999999999998 5599999
Q ss_pred eEEeeeeeeecCC--CCcceeEeeeEEeeccCcccccccCccccccccccccccchhhHHHHHHHhhhccc-CCcCCCCC
Q psy7272 73 GVFSPQKAVDDMT--DLTTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEITP-HLVNLNED 149 (275)
Q Consensus 73 ~if~i~~~~~~~~--~~~~~~~s~l~lvDLAGSEr~~~~~~~~~~~~E~~~IN~SL~~Lg~vi~al~~~~~-~l~~l~~~ 149 (275)
+||++++...... +......|+|+|||||||||..+++..|.+++|+.+||+||++|++||.+|++.++ |+
T Consensus 210 ~i~~i~v~~~~~~~~~~~~~~~s~L~~VDLAGsEr~~~~~~~~~~~~E~~~iN~sL~~L~~vi~al~~~~~~~i------ 283 (333)
T cd01371 210 SIFTITIECSEKGEDGENHIRVGKLNLVDLAGSERQSKTGATGDRLKEATKINLSLSALGNVISALVDGKSTHI------ 283 (333)
T ss_pred EEEEEEEEEEeccCCCCCcEEEEEEEEEECCCCCcccccCCchhhhHhHhhhhhHHHHHHHHHHHHHhCCCCcC------
Confidence 9999977554432 45567789999999999999999999999999999999999999999999998765 55
Q ss_pred CCCcceeEEEeeccccccCCCCCCCC
Q psy7272 150 PFMSECLIYYIKDGRTKVGSAESNLP 175 (275)
Q Consensus 150 P~r~s~Lt~~L~~~~t~IGr~~~~~~ 175 (275)
|||+|+||++|++.++ |++.+.++
T Consensus 284 pyR~SkLT~lL~~~l~--g~s~t~~I 307 (333)
T cd01371 284 PYRDSKLTRLLQDSLG--GNSKTVMC 307 (333)
T ss_pred CCccCHHHHHHHHhcC--CCceEEEE
Confidence 9999999999999987 77665444
No 18
>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-c
Probab=99.89 E-value=8.8e-26 Score=209.41 Aligned_cols=154 Identities=31% Similarity=0.429 Sum_probs=127.7
Q ss_pred eEEecCCcchHHHHHHHHHH----------------HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccCCceee
Q psy7272 10 QTVAPASVIAEEAVDQLQAS----------------EKLIAELNETWEEKLKRTEEIRIQREAVFAEMGVAVKEDGNTVG 73 (275)
Q Consensus 10 ~~~~~~~~~~~~~~~~L~e~----------------E~L~~el~~t~EE~L~~~e~~~~~r~~~~t~~~~~~~~ssrsh~ 73 (275)
..+.++|.+.+.+.|-|... +.+.+....+|+|.++.+..+.++|.++.|.+| .+|||||+
T Consensus 129 v~~S~~EIy~e~v~DLL~~~~~~l~i~~~~~~~~~v~gl~~~~v~s~~e~~~~i~~~~~~R~~~~t~~n---~~ssRSH~ 205 (325)
T cd01369 129 VKVSYLEIYMEKIRDLLDVSKDNLQVHEDKNRGVYVKGLTERFVSSPEEVLEVINEGKSNRAVASTNMN---EESSRSHS 205 (325)
T ss_pred EEEEEEEEECCChhhcccCccCCceEEEcCCCCEEEcCCEEEEcCCHHHHHHHHHHHHhhcccccCcCC---CccccccE
Confidence 35666777788887777653 233344567899999999999999999999987 55999999
Q ss_pred EEeeeeeeecCCCCcceeEeeeEEeeccCcccccccCccccccccccccccchhhHHHHHHHhhhcc-cCCcCCCCCCCC
Q psy7272 74 VFSPQKAVDDMTDLTTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEIT-PHLVNLNEDPFM 152 (275)
Q Consensus 74 if~i~~~~~~~~~~~~~~~s~l~lvDLAGSEr~~~~~~~~~~~~E~~~IN~SL~~Lg~vi~al~~~~-~~l~~l~~~P~r 152 (275)
||++.+..... .......|+|+|||||||||..++++.|.+++|+..||+||++|++||.+|+++. .|+ |||
T Consensus 206 i~~i~v~~~~~-~~~~~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~in~sl~~L~~vi~aL~~~~~~~v------pyR 278 (325)
T cd01369 206 IFLITLKQENV-ETGSKKRGKLFLVDLAGSEKVSKTGAEGQTLEEAKKINKSLSALGNVINALTDGKSTHI------PYR 278 (325)
T ss_pred EEEEEEEEEec-CCCCEEEEEEEEEECCCCCcccccCCcchhHHHHHHHhHHHHHHHHHHHHHHcCCCCcC------CCc
Confidence 99998755443 2344678999999999999999999999999999999999999999999999876 555 999
Q ss_pred cceeEEEeeccccccCCCCCCCC
Q psy7272 153 SECLIYYIKDGRTKVGSAESNLP 175 (275)
Q Consensus 153 ~s~Lt~~L~~~~t~IGr~~~~~~ 175 (275)
+|+||++|++.++ |++.+.++
T Consensus 279 ~S~LT~lL~~~L~--g~s~t~~I 299 (325)
T cd01369 279 DSKLTRILQDSLG--GNSRTTLI 299 (325)
T ss_pred cCHHHHHHHHhcC--CCCeEEEE
Confidence 9999999999987 77665444
No 19
>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and lo
Probab=99.89 E-value=5.6e-25 Score=203.93 Aligned_cols=152 Identities=26% Similarity=0.305 Sum_probs=126.7
Q ss_pred eeEEecCCcchHHHHHHHHHHHH---------------HHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccCCceee
Q psy7272 9 IQTVAPASVIAEEAVDQLQASEK---------------LIAELNETWEEKLKRTEEIRIQREAVFAEMGVAVKEDGNTVG 73 (275)
Q Consensus 9 ~~~~~~~~~~~~~~~~~L~e~E~---------------L~~el~~t~EE~L~~~e~~~~~r~~~~t~~~~~~~~ssrsh~ 73 (275)
-..+.++|.+.|.+.|-|..... +.+....+|+|.++....+.++|.++.|.+| ..|||||+
T Consensus 131 ~v~~S~~EIy~e~v~DLL~~~~~l~i~~~~~~~~~v~~l~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n---~~SSRSH~ 207 (322)
T cd01367 131 GVTVSFFEIYGGKLFDLLNDRKRLSVLEDGKGNVQIVGLTEKPVTSVDELLELIESGNSLRTTGSTGAN---DQSSRSHA 207 (322)
T ss_pred EEEEEEEeeecCchhhhccCccceeEEEcCCCCEEeCCCEEEEeCCHHHHHHHHHHHhcccccccCcCC---CCcccceE
Confidence 34677788888888887765222 2334456789999999999999999999998 45999999
Q ss_pred EEeeeeeeecCCCCcceeEeeeEEeeccCcccccccC-ccccccccccccccchhhHHHHHHHhhhcccCCcCCCCCCCC
Q psy7272 74 VFSPQKAVDDMTDLTTEKVSKISLVDLAGSERADSTG-AKGTRLKEGANINKSLTTLGKVISALAEITPHLVNLNEDPFM 152 (275)
Q Consensus 74 if~i~~~~~~~~~~~~~~~s~l~lvDLAGSEr~~~~~-~~~~~~~E~~~IN~SL~~Lg~vi~al~~~~~~l~~l~~~P~r 152 (275)
||++.+..... ....|+|+|||||||||...++ ..+++++|+.+||+||++|++||.+|++.+.|+ |||
T Consensus 208 i~~i~v~~~~~----~~~~s~l~~vDLAGsE~~~~~~~~~~~~~~e~~~IN~SL~~L~~vi~al~~~~~~i------PyR 277 (322)
T cd01367 208 ILQIILKNKKL----NKLLGKLSFIDLAGSERGADTSEHDRQTRKEGAEINKSLLALKECIRALASNKAHV------PFR 277 (322)
T ss_pred EEEEEEEEecC----CeeEEEEEEeecCCccccccccccchhhHHhHhHHhHHHHHHHHHHHHHhcCCCcC------CCc
Confidence 99997765443 5678999999999999988765 478999999999999999999999999988776 999
Q ss_pred cceeEEEeeccccccCCCCCCCC
Q psy7272 153 SECLIYYIKDGRTKVGSAESNLP 175 (275)
Q Consensus 153 ~s~Lt~~L~~~~t~IGr~~~~~~ 175 (275)
+|+||++|++.++ |++.+.++
T Consensus 278 dSkLT~lL~~~L~--g~~~t~~I 298 (322)
T cd01367 278 GSKLTQVLRDSFI--GNSKTVMI 298 (322)
T ss_pred cCHHHHHHHHhhC--CCCeEEEE
Confidence 9999999999987 88766554
No 20
>KOG0246|consensus
Probab=99.89 E-value=1.1e-24 Score=207.57 Aligned_cols=135 Identities=29% Similarity=0.305 Sum_probs=103.7
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccCCceeeEEeeeeeeecCCCCcceeEeeeEEeeccCcccccc-cCcc
Q psy7272 34 AELNETWEEKLKRTEEIRIQREAVFAEMGVAVKEDGNTVGVFSPQKAVDDMTDLTTEKVSKISLVDLAGSERADS-TGAK 112 (275)
Q Consensus 34 ~el~~t~EE~L~~~e~~~~~r~~~~t~~~~~~~~ssrsh~if~i~~~~~~~~~~~~~~~s~l~lvDLAGSEr~~~-~~~~ 112 (275)
++.....||.|..++.+...|.+.-|..| ++|||||+||+|-.+... .....+++.||||||+||... +.++
T Consensus 387 E~~v~~~eeVl~lIe~Gns~RtsG~TsAN---s~SSRSHAvfQIilr~~~----~~k~hGKfSlIDLAGnERGaDts~ad 459 (676)
T KOG0246|consen 387 EEEVSGVEEVLELIEKGNSCRTSGQTSAN---SNSSRSHAVFQIILRKHG----EFKLHGKFSLIDLAGNERGADTSSAD 459 (676)
T ss_pred eeeccCHHHHHHHHHhcccccccCcccCc---ccccccceeEeeeeecCC----cceeEeEEEEEEccCCccCCcccccc
Confidence 34445566777777766666766555554 679999999998654332 255679999999999999544 4445
Q ss_pred ccccccccccccchhhHHHHHHHhhhcccCCcCCCCCCCCcceeEEEeeccccccC-CCCCCCCCCcceeeecCC
Q psy7272 113 GTRLKEGANINKSLTTLGKVISALAEITPHLVNLNEDPFMSECLIYYIKDGRTKVG-SAESNLPQESQDIQLSGS 186 (275)
Q Consensus 113 ~~~~~E~~~IN~SL~~Lg~vi~al~~~~~~l~~l~~~P~r~s~Lt~~L~~~~t~IG-r~~~~~~~~~~dI~L~~~ 186 (275)
-+...||+.|||||++|..||.||.+.++|+ |||.|+||.+|+|+ .|| ++.+.|+ +.|++.-.
T Consensus 460 RqtRlEGAEINKSLLALKECIRaLg~nk~H~------PFR~SKLTqVLRDS--FIGenSrTcMI---A~ISPg~~ 523 (676)
T KOG0246|consen 460 RQTRLEGAEINKSLLALKECIRALGRNKSHL------PFRGSKLTQVLRDS--FIGENSRTCMI---ATISPGIS 523 (676)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHhcCCCCCC------CchhhhHHHHHHHh--hcCCCCceEEE---EEeCCCcc
Confidence 5778899999999999999999999999999 99999999999998 459 7777444 44444333
No 21
>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80
Probab=99.89 E-value=1.1e-24 Score=202.78 Aligned_cols=130 Identities=31% Similarity=0.378 Sum_probs=112.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHhhccccccCCceeeEEeeeeeeec-CCCCcceeEeeeEEeeccCcccccccCccc
Q psy7272 35 ELNETWEEKLKRTEEIRIQREAVFAEMGVAVKEDGNTVGVFSPQKAVDD-MTDLTTEKVSKISLVDLAGSERADSTGAKG 113 (275)
Q Consensus 35 el~~t~EE~L~~~e~~~~~r~~~~t~~~~~~~~ssrsh~if~i~~~~~~-~~~~~~~~~s~l~lvDLAGSEr~~~~~~~~ 113 (275)
....+|+|.++....+.++|....|.+| ..|||||+||++.+.... .........|+|+|||||||||..+++..+
T Consensus 179 ~~v~s~~e~~~~~~~g~~~R~~~~t~~n---~~sSRSH~i~~l~v~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~~~~~~ 255 (334)
T cd01375 179 HSATTEEEALNLLFLGETNRTIAETSMN---QASSRSHCIFTIHLESRSREAGSEVVRLSKLNLVDLAGSERVSKTGVSG 255 (334)
T ss_pred EEeCCHHHHHHHHHHHHhhcccccCcCc---CCcCcCeEEEEEEEEEEecCCCCCceEEEEEEEEECCCCCccccccCch
Confidence 3467899999999999999999999888 559999999999765442 233445678999999999999999999999
Q ss_pred cccccccccccchhhHHHHHHHhhhcc-cCCcCCCCCCCCcceeEEEeeccccccCCCCCCCC
Q psy7272 114 TRLKEGANINKSLTTLGKVISALAEIT-PHLVNLNEDPFMSECLIYYIKDGRTKVGSAESNLP 175 (275)
Q Consensus 114 ~~~~E~~~IN~SL~~Lg~vi~al~~~~-~~l~~l~~~P~r~s~Lt~~L~~~~t~IGr~~~~~~ 175 (275)
.+++|+..||+||++|++||.+|++++ .|+ |||+|+||++|++.++ |++.+.++
T Consensus 256 ~~~~e~~~iN~SL~~L~~vi~~l~~~~~~~i------pyRdSkLT~lL~d~Lg--g~~~t~~I 310 (334)
T cd01375 256 QVLKEAKYINKSLSFLEQVINALSEKARTHV------PYRNSKLTHVLRDSLG--GNCKTVML 310 (334)
T ss_pred hhhhhhhhhhhhHHHHHHHHHHHHhCCCCCC------CCcccHHHHHHHHhcC--CCceEEEE
Confidence 999999999999999999999999987 666 9999999999999987 77766444
No 22
>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain,
Probab=99.89 E-value=1.1e-24 Score=203.27 Aligned_cols=134 Identities=29% Similarity=0.391 Sum_probs=113.7
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccCCceeeEEeeeeeeecCC---------CCcceeEeeeEEeeccCcc
Q psy7272 34 AELNETWEEKLKRTEEIRIQREAVFAEMGVAVKEDGNTVGVFSPQKAVDDMT---------DLTTEKVSKISLVDLAGSE 104 (275)
Q Consensus 34 ~el~~t~EE~L~~~e~~~~~r~~~~t~~~~~~~~ssrsh~if~i~~~~~~~~---------~~~~~~~s~l~lvDLAGSE 104 (275)
+....+|+|.++.+..+.++|....|.+| .+|||||+||++.+.+.... .......|+|+||||||||
T Consensus 172 ~~~v~s~~e~~~~l~~g~~~R~~~~t~~n---~~sSRsH~i~~i~v~~~~~~~~~~~~~~~~~~~~~~s~l~~VDLAGsE 248 (341)
T cd01372 172 EVTVNSAQEVMSCLEQGSLSRTTASTAMN---SQSSRSHAIFTITLEQTRKNGPIAPMSGDDKNSTLTSKFHFVDLAGSE 248 (341)
T ss_pred EEEECCHHHHHHHHHHHHHhcccccccCC---CccCcCcEEEEEEEEEEecCCccccccccCCCceeeEEEEEEECCCCc
Confidence 34457889999999999999999999887 55999999999977665543 3445778999999999999
Q ss_pred cccccCccccccccccccccchhhHHHHHHHhhhcccCCcCCCCCCCCcceeEEEeeccccccCCCCCCCC
Q psy7272 105 RADSTGAKGTRLKEGANINKSLTTLGKVISALAEITPHLVNLNEDPFMSECLIYYIKDGRTKVGSAESNLP 175 (275)
Q Consensus 105 r~~~~~~~~~~~~E~~~IN~SL~~Lg~vi~al~~~~~~l~~l~~~P~r~s~Lt~~L~~~~t~IGr~~~~~~ 175 (275)
|..++++.|++++|+..||+||.+|++||.+|+..++ ...++|||+|+||++|++.++ |++.+.++
T Consensus 249 ~~~~~~~~~~~~~e~~~in~sl~aL~~vi~al~~~~~---~~~~ipyR~S~LT~lL~~~Lg--g~s~t~~I 314 (341)
T cd01372 249 RLKKTGATGDRLKEGISINSGLLALGNVISALGDESK---KGSHVPYRDSKLTRLLQDSLG--GNSHTLMI 314 (341)
T ss_pred ccccccCchhHhHHHHHHhHHHHHHHHHHHHHHhcCC---CCCCCCCcccHHHHHHHHhcC--CCceEEEE
Confidence 9999999999999999999999999999999998764 123349999999999999987 77665444
No 23
>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for mi
Probab=99.89 E-value=1.6e-24 Score=201.27 Aligned_cols=160 Identities=29% Similarity=0.356 Sum_probs=128.6
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccCCceeeEEeeeeeeecCCCCcceeEeeeEEeeccCcccccccCcc
Q psy7272 33 IAELNETWEEKLKRTEEIRIQREAVFAEMGVAVKEDGNTVGVFSPQKAVDDMTDLTTEKVSKISLVDLAGSERADSTGAK 112 (275)
Q Consensus 33 ~~el~~t~EE~L~~~e~~~~~r~~~~t~~~~~~~~ssrsh~if~i~~~~~~~~~~~~~~~s~l~lvDLAGSEr~~~~~~~ 112 (275)
.+....+|+|.++....+.+.|....|.+| .+|||||+||++++...... ......|+|+||||||||+..++++.
T Consensus 170 ~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n---~~sSRsH~i~~i~v~~~~~~-~~~~~~s~l~~VDLaGsE~~~~~~~~ 245 (329)
T cd01366 170 TEVPVSSPEEVTRLLNLGSKNRSVASTNMN---EHSSRSHAVFQLKIRGTNLQ-TGEQTRGKLNLVDLAGSERLKKSGAT 245 (329)
T ss_pred EEEEeCCHHHHHHHHHHHHhhccccccccc---CCCCCccEEEEEEEEEEcCC-CCcEEEEEEEEEECCCCccccccccc
Confidence 344556889999999999999999888887 55999999999987655443 44567899999999999999999999
Q ss_pred ccccccccccccchhhHHHHHHHhhhcccCCcCCCCCCCCcceeEEEeeccccccCCCCCCCCCCcceeeecCCcccccc
Q psy7272 113 GTRLKEGANINKSLTTLGKVISALAEITPHLVNLNEDPFMSECLIYYIKDGRTKVGSAESNLPQESQDIQLSGSHIKTEH 192 (275)
Q Consensus 113 ~~~~~E~~~IN~SL~~Lg~vi~al~~~~~~l~~l~~~P~r~s~Lt~~L~~~~t~IGr~~~~~~~~~~dI~L~~~~Is~~H 192 (275)
+.+++|+..||+||++|++||.+|+++..|+ |||+|+||++|++.++ |++.+.++ ++|.+....+.
T Consensus 246 ~~~~~e~~~in~Sl~~L~~vl~~l~~~~~~i------pyr~S~LT~lL~~~l~--g~~~t~~i---~~vsp~~~~~~--- 311 (329)
T cd01366 246 GDRLKEAQAINKSLSALGDVISALRSKDSHV------PYRNSKLTYLLQDSLG--GNSKTLMF---VNISPLESNLS--- 311 (329)
T ss_pred chhhHhHhhhhhHHHHHHHHHHHHhcCCCcC------CCcccHhHHHHHHhcC--CCceEEEE---EEeCCchhhHH---
Confidence 9999999999999999999999999987777 9999999999999987 77765444 44444333332
Q ss_pred eEEEEeCCEEEEEeCCCCceEECC
Q psy7272 193 CTFENVEGVVTLIPFQEALCYVNG 216 (275)
Q Consensus 193 c~I~~~e~~vtL~~~s~a~t~VNG 216 (275)
++..||+++++++.+.||
T Consensus 312 ------etl~tL~~a~~~~~i~~~ 329 (329)
T cd01366 312 ------ETLCSLRFASRVRSVELG 329 (329)
T ss_pred ------HHHHHHHHHHHhhcccCC
Confidence 455566666666555554
No 24
>cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to
Probab=99.88 E-value=6.2e-24 Score=196.80 Aligned_cols=130 Identities=33% Similarity=0.425 Sum_probs=112.6
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccCCceeeEEeeeeeeecCCC--CcceeEeeeEEeeccCcccccccCc
Q psy7272 34 AELNETWEEKLKRTEEIRIQREAVFAEMGVAVKEDGNTVGVFSPQKAVDDMTD--LTTEKVSKISLVDLAGSERADSTGA 111 (275)
Q Consensus 34 ~el~~t~EE~L~~~e~~~~~r~~~~t~~~~~~~~ssrsh~if~i~~~~~~~~~--~~~~~~s~l~lvDLAGSEr~~~~~~ 111 (275)
+....+|+|.++....+.++|..+.|.+| .+|||||+||++.+....... ......|+|+|||||||||....+
T Consensus 162 ~~~v~s~~e~~~~l~~~~~~R~~~~t~~n---~~ssRSH~i~~i~v~~~~~~~~~~~~~~~s~l~~vDLAGsE~~~~~~- 237 (321)
T cd01374 162 EEIVTSPEHLLQLIARGEKNRHVGETDFN---ERSSRSHTIFQLTIESRERGDSESGTVRVSTLNLIDLAGSERASQTG- 237 (321)
T ss_pred EEEeCCHHHHHHHHHHHHhccccccCcCC---CccccccEEEEEEEEEEecCCCCCCcEEEEEEEEEECCCCCccccCC-
Confidence 34467899999999999999999999987 569999999999776554433 356778999999999999999998
Q ss_pred cccccccccccccchhhHHHHHHHhhhcc--cCCcCCCCCCCCcceeEEEeeccccccCCCCCCCC
Q psy7272 112 KGTRLKEGANINKSLTTLGKVISALAEIT--PHLVNLNEDPFMSECLIYYIKDGRTKVGSAESNLP 175 (275)
Q Consensus 112 ~~~~~~E~~~IN~SL~~Lg~vi~al~~~~--~~l~~l~~~P~r~s~Lt~~L~~~~t~IGr~~~~~~ 175 (275)
.+.+++|+.+||+||++|++||.+|++.. .|+ |||+|+||++|++.++ |++.+.++
T Consensus 238 ~~~~~~e~~~iN~Sl~~L~~vi~al~~~~~~~~v------pyR~SkLT~lL~~~L~--g~s~t~~i 295 (321)
T cd01374 238 AGERRKEGSFINKSLLTLGTVISKLSEGKNSGHI------PYRDSKLTRILQPSLS--GNARTAII 295 (321)
T ss_pred CCccccccchhhhHHHHHHHHHHHHHhcCCCCcC------CCcCCHHHHHHHHhcC--CCceEEEE
Confidence 89999999999999999999999999975 566 9999999999999887 77766544
No 25
>KOG0244|consensus
Probab=99.88 E-value=9.7e-25 Score=217.94 Aligned_cols=176 Identities=29% Similarity=0.314 Sum_probs=141.4
Q ss_pred CCceeEEecCCcchHHHHHHHH-----------H------HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccC
Q psy7272 6 DGNIQTVAPASVIAEEAVDQLQ-----------A------SEKLIAELNETWEEKLKRTEEIRIQREAVFAEMGVAVKED 68 (275)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~L~-----------e------~E~L~~el~~t~EE~L~~~e~~~~~r~~~~t~~~~~~~~s 68 (275)
.+.-.+|...+.|.+++.+-+. + .-.|.+......++.+..++.+.-.|.++.|.|| +.|
T Consensus 114 ~~f~i~vs~vely~e~v~dl~~~~~~~~~i~~~e~~g~it~~glte~tv~~~~q~~~~L~~g~~~RtvasTnMN---~qs 190 (913)
T KOG0244|consen 114 FVFRITVSFVELYNEEVLDLLKPSRLKANIKLREPKGEITIRGLTEKTVRMKLQLLSRLEKGSLERTVASTNMN---AQS 190 (913)
T ss_pred cceeeeeeeeeccchhhhhhcChhhhhhceeccccCCceEEEeehHHHHHHHHHHHHHHHhchHHHHHHHHhcc---hhh
Confidence 3455677777888888877666 1 0123455666667777777788889999999998 559
Q ss_pred CceeeEEeeeeeeecCCCCcceeEeeeEEeeccCcccccccCccccccccccccccchhhHHHHHHHhhhcccCCcCCCC
Q psy7272 69 GNTVGVFSPQKAVDDMTDLTTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEITPHLVNLNE 148 (275)
Q Consensus 69 srsh~if~i~~~~~~~~~~~~~~~s~l~lvDLAGSEr~~~~~~~~~~~~E~~~IN~SL~~Lg~vi~al~~~~~~l~~l~~ 148 (275)
||||+|||+.+.+...........+||+|||||||||.++|+++|+|++|+.+||.+|++||+||.||.+.+. ..+
T Consensus 191 sRshAifti~lkq~kk~~~~s~~~sKlhlVDLAGSER~kkT~a~gdrlKEgInIN~gLL~LgnVIsaLg~~kk----~~~ 266 (913)
T KOG0244|consen 191 SRSHAIFTITLKQRKKLSKRSSFCSKLHLVDLAGSERVKKTKAEGDRLKEGININGGLLALGNVISALGEAKK----GGE 266 (913)
T ss_pred hhhhHHHHHHHHHHHHhhccchhhhhhheeeccccccccccccchhhhhhccCcchHHHHHHHHHHHHHhhhc----CCc
Confidence 9999999986655555555556779999999999999999999999999999999999999999999998776 244
Q ss_pred CCCCcceeEEEeeccccccCCCCCCCCCCcceeeecCCcccccce
Q psy7272 149 DPFMSECLIYYIKDGRTKVGSAESNLPQESQDIQLSGSHIKTEHC 193 (275)
Q Consensus 149 ~P~r~s~Lt~~L~~~~t~IGr~~~~~~~~~~dI~L~~~~Is~~Hc 193 (275)
+|||+|+++++|+++++ |++.+-|+ ++|.+.+..+...+-
T Consensus 267 vpyRdSkltrlLQdslg--Gns~tlmi---aCiSpadsn~~Etln 306 (913)
T KOG0244|consen 267 VPYRDSKLTRLLQDSLG--GNSDTLMI---ACISPADSNAQETLN 306 (913)
T ss_pred ccchHHHHHHHHHHHhc--CCcceeee---eecChhhhhhhhHHH
Confidence 59999999999999999 99988777 777776666664443
No 26
>smart00129 KISc Kinesin motor, catalytic domain. ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.
Probab=99.84 E-value=1.7e-22 Score=188.05 Aligned_cols=161 Identities=34% Similarity=0.403 Sum_probs=125.3
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHhhccccccCCceeeEEeeeeeee-cCCCCcceeEeeeEEeeccCcccccccCccc
Q psy7272 35 ELNETWEEKLKRTEEIRIQREAVFAEMGVAVKEDGNTVGVFSPQKAVD-DMTDLTTEKVSKISLVDLAGSERADSTGAKG 113 (275)
Q Consensus 35 el~~t~EE~L~~~e~~~~~r~~~~t~~~~~~~~ssrsh~if~i~~~~~-~~~~~~~~~~s~l~lvDLAGSEr~~~~~~~~ 113 (275)
....+++|.++....+.++|.+..|.+| .+|||||+||++++... ..........|+|+|||||||||....++.+
T Consensus 170 ~~v~s~~e~~~~l~~~~~~R~~~~t~~n---~~ssRsH~i~~l~v~~~~~~~~~~~~~~s~l~~VDLaGse~~~~~~~~~ 246 (335)
T smart00129 170 ISVSSFEEVYNLLEKGNKNRTVAATKMN---EESSRSHAVFTITVESKIKNSSSGSGKASKLNLVDLAGSERASKTGAEG 246 (335)
T ss_pred EEeCCHHHHHHHHHHHHhccccccCCCC---CCCCcceEEEEEEEEEEecCCCCCCEEEEEEEEEECCCCCccccccChh
Confidence 3356789999999999999999999888 55999999999987644 2344456788999999999999999999999
Q ss_pred cccccccccccchhhHHHHHHHhhhc--ccCCcCCCCCCCCcceeEEEeeccccccCCCCCCCCCCcceeeecCCccccc
Q psy7272 114 TRLKEGANINKSLTTLGKVISALAEI--TPHLVNLNEDPFMSECLIYYIKDGRTKVGSAESNLPQESQDIQLSGSHIKTE 191 (275)
Q Consensus 114 ~~~~E~~~IN~SL~~Lg~vi~al~~~--~~~l~~l~~~P~r~s~Lt~~L~~~~t~IGr~~~~~~~~~~dI~L~~~~Is~~ 191 (275)
.+++|+..||+||.+|++||.+|++. ..|+ |||+++||++|++.++ |...+.++ ++|.+.....
T Consensus 247 ~~~~e~~~in~sl~~L~~~l~~l~~~~~~~~i------p~r~S~LT~lL~~~L~--g~~~~~~i---~~vsp~~~~~--- 312 (335)
T smart00129 247 DRLKEAGNINKSLSALGNVINALADGQKSRHI------PYRDSKLTRLLQDSLG--GNSKTLMI---ANISPSLSNL--- 312 (335)
T ss_pred HHHHhhchhhhHHHHHHHHHHHHHhcCCCCCC------CCcCcHhHHHHHHHcC--CCCeEEEE---EEcCCCccch---
Confidence 99999999999999999999999984 3455 9999999999999886 76655333 2332222221
Q ss_pred ceEEEEeCCEEEEEeCCCCceEECCee
Q psy7272 192 HCTFENVEGVVTLIPFQEALCYVNGRQ 218 (275)
Q Consensus 192 Hc~I~~~e~~vtL~~~s~a~t~VNG~~ 218 (275)
.++..+|++++.++.+.|+.+
T Consensus 313 ------~eTl~tL~~a~~~~~i~~~p~ 333 (335)
T smart00129 313 ------EETLSTLRFASRAKEIKNKAI 333 (335)
T ss_pred ------HHHHHHHHHHHHHhhcccCCC
Confidence 245556777766666666543
No 27
>cd00106 KISc Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coil
Probab=99.84 E-value=3.1e-22 Score=185.59 Aligned_cols=131 Identities=34% Similarity=0.444 Sum_probs=111.9
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccCCceeeEEeeeeeeecCCCCc-ceeEeeeEEeeccCcccccccCcc
Q psy7272 34 AELNETWEEKLKRTEEIRIQREAVFAEMGVAVKEDGNTVGVFSPQKAVDDMTDLT-TEKVSKISLVDLAGSERADSTGAK 112 (275)
Q Consensus 34 ~el~~t~EE~L~~~e~~~~~r~~~~t~~~~~~~~ssrsh~if~i~~~~~~~~~~~-~~~~s~l~lvDLAGSEr~~~~~~~ 112 (275)
+....+|+|.++....+.++|.+..|.+| ..|||||+||++++......... ....|+|+||||||||+....+..
T Consensus 171 ~~~v~s~~e~~~~l~~~~~~R~~~~t~~n---~~ssRSH~i~~i~v~~~~~~~~~~~~~~s~l~~VDLaGse~~~~~~~~ 247 (328)
T cd00106 171 EVEVGSAEDALSLLQKGLKNRTTASTAMN---ERSSRSHAIFTIHVEQRNTTNDGRSIKSSKLNLVDLAGSERAKKTGAE 247 (328)
T ss_pred EEEeCCHHHHHHHHHHHHhhcCcccCcCC---CCcCcCcEEEEEEEEEEecCCCCccEEEEEEEEEECCCCCcccccCCc
Confidence 34456899999999999999999888887 45999999999987655544322 478899999999999999999999
Q ss_pred ccccccccccccchhhHHHHHHHhhhcc--cCCcCCCCCCCCcceeEEEeeccccccCCCCCCCC
Q psy7272 113 GTRLKEGANINKSLTTLGKVISALAEIT--PHLVNLNEDPFMSECLIYYIKDGRTKVGSAESNLP 175 (275)
Q Consensus 113 ~~~~~E~~~IN~SL~~Lg~vi~al~~~~--~~l~~l~~~P~r~s~Lt~~L~~~~t~IGr~~~~~~ 175 (275)
+.+++|++.||+||++|++||.+|+... .|+ |||+++||++|++.+. |+..+.++
T Consensus 248 ~~~~~e~~~in~sl~~L~~vl~~l~~~~~~~~i------p~r~SkLT~lL~~~l~--g~~~t~~I 304 (328)
T cd00106 248 GDRLKEAKNINKSLSALGNVISALSSGQKKKHI------PYRDSKLTRLLQDSLG--GNSKTLMI 304 (328)
T ss_pred hhhhHhHHhhhhhHHHHHHHHHHHHhcCCCCcC------CCcCcHHHHHHHHhcC--CCCeEEEE
Confidence 9999999999999999999999999987 666 9999999999999877 66554333
No 28
>PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. The kinesin motor domain is located in the N-terminal part of most of the above proteins, with the exception of KAR3, klpA, and ncd where it is located in the C-terminal section. The kinesin motor domain contains about 330 amino acids. An ATP-binding motif of type A is found near position 80 to 90, the C-terminal half of the domain is involved in microtubule-binding.; GO: 0003777 microtubule motor activity, 0005524 ATP binding, 0007018 microtubule-based movement; PDB: 3NWN_A 2Y5W_A 2Y65_C 3BFN_A 2WBE_C 2ZFL_A 2ZFI_A 1I6I_A 2ZFM_A 1IA0_K ....
Probab=99.83 E-value=5.7e-22 Score=184.28 Aligned_cols=127 Identities=35% Similarity=0.484 Sum_probs=108.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHhhccccccCCceeeEEeeeeeeecCCCCcc---eeEeeeEEeeccCcccccccCcc-c
Q psy7272 38 ETWEEKLKRTEEIRIQREAVFAEMGVAVKEDGNTVGVFSPQKAVDDMTDLTT---EKVSKISLVDLAGSERADSTGAK-G 113 (275)
Q Consensus 38 ~t~EE~L~~~e~~~~~r~~~~t~~~~~~~~ssrsh~if~i~~~~~~~~~~~~---~~~s~l~lvDLAGSEr~~~~~~~-~ 113 (275)
.+++|.++....+.++|..+.+.+| ..|||||+||++.+.......... ...|+|+|||||||||..+.+.. +
T Consensus 177 ~s~~~~~~~l~~~~~~R~~~~t~~n---~~sSRSH~i~~i~v~~~~~~~~~~~~~~~~s~l~~vDLaGsE~~~~~~~~~~ 253 (335)
T PF00225_consen 177 KSAEEALQLLKKGQKNRRTASTKMN---ARSSRSHAIFTIHVEQKDRDPSDDEESVKHSRLTFVDLAGSERLKKSGASDG 253 (335)
T ss_dssp SSHHHHHHHHHHHHHHHTCTSSSCT---HHGGGSEEEEEEEEEEEETTTTTEEEEEEEEEEEEEEEEESTGGCGCSSSSH
T ss_pred cccccccccccchhhcccccccccc---ccccccccccccccccccccccccccceeecceeeeeccccccccccccccc
Confidence 5678888888888888988888876 559999999999877666555443 68899999999999999999874 7
Q ss_pred cccccccccccchhhHHHHHHHhhhc--ccCCcCCCCCCCCcceeEEEeeccccccCCCCCCCC
Q psy7272 114 TRLKEGANINKSLTTLGKVISALAEI--TPHLVNLNEDPFMSECLIYYIKDGRTKVGSAESNLP 175 (275)
Q Consensus 114 ~~~~E~~~IN~SL~~Lg~vi~al~~~--~~~l~~l~~~P~r~s~Lt~~L~~~~t~IGr~~~~~~ 175 (275)
.+++|+..||+||.+|++||.+|+++ ..|+ |||+|+||++|++.++ |++.+.++
T Consensus 254 ~~~~e~~~in~Sl~~L~~vi~~L~~~~~~~~v------pyr~SkLT~lL~d~l~--g~s~t~~I 309 (335)
T PF00225_consen 254 QRLKESSNINKSLSALGNVIRALAQGSKQSHV------PYRDSKLTRLLKDSLG--GNSKTILI 309 (335)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCTTSTSSS------CGGGSHHHHHTGGGTS--SSSEEEEE
T ss_pred ccccccceecchhhhhhhhHhhhhccccchhh------hhhcccccceeccccc--ccccceeE
Confidence 88999999999999999999999998 6666 9999999999999988 77655444
No 29
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=99.81 E-value=1.8e-21 Score=192.41 Aligned_cols=154 Identities=36% Similarity=0.447 Sum_probs=124.6
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHhhccccccCCceeeEEeeeeeeecCCCCcceeEeeeEEeeccCcccccccCcccccc
Q psy7272 37 NETWEEKLKRTEEIRIQREAVFAEMGVAVKEDGNTVGVFSPQKAVDDMTDLTTEKVSKISLVDLAGSERADSTGAKGTRL 116 (275)
Q Consensus 37 ~~t~EE~L~~~e~~~~~r~~~~t~~~~~~~~ssrsh~if~i~~~~~~~~~~~~~~~s~l~lvDLAGSEr~~~~~~~~~~~ 116 (275)
..+|||.+..+.....+|.++.|++| ..|||||+||++......... .....++++|||||||||...++..+.|+
T Consensus 182 ~~s~ee~l~~l~~~~~nr~~~~te~n---~~ssRshsi~~i~~~~~~~~~-~~~~~~~l~lvDLagSE~~~~~~~~~~r~ 257 (568)
T COG5059 182 VSSKEEILDLLRKGEKNRTTASTEIN---DESSRSHSIFQIELASKNKVS-GTSETSKLSLVDLAGSERAARTGNRGTRL 257 (568)
T ss_pred cCChHHHHHHHHHhhhhcccccchhc---cccccceEEEEEEEEEeccCc-cceecceEEEEeeccccccchhhcccchh
Confidence 56789999999999999999999998 669999999998764444333 22333899999999999999999999999
Q ss_pred ccccccccchhhHHHHHHHhhh--cccCCcCCCCCCCCcceeEEEeeccccccCCCCCCCCCCcceeeecCCcccccceE
Q psy7272 117 KEGANINKSLTTLGKVISALAE--ITPHLVNLNEDPFMSECLIYYIKDGRTKVGSAESNLPQESQDIQLSGSHIKTEHCT 194 (275)
Q Consensus 117 ~E~~~IN~SL~~Lg~vi~al~~--~~~~l~~l~~~P~r~s~Lt~~L~~~~t~IGr~~~~~~~~~~dI~L~~~~Is~~Hc~ 194 (275)
+|+..||+||.+||+||.+|.. ...|+ |||+++|+++|++.++ |...+.+. +.|.+......
T Consensus 258 ~E~~~iN~sLl~Lg~vI~~L~~~~~~~~i------pyReskLTRlLq~sLg--G~~~~~~i---~~Isp~~~~~~----- 321 (568)
T COG5059 258 KEGASINKSLLTLGNVINALGDKKKSGHI------PYRESKLTRLLQDSLG--GNCNTRVI---CTISPSSNSFE----- 321 (568)
T ss_pred hhhhhhHhhHHHHHHHHHHHhccccCCcc------chhhhHHHHHHHHhcC--CCccEEEE---EEEcCCCCchH-----
Confidence 9999999999999999999997 44444 9999999999999988 87766555 66666554433
Q ss_pred EEEeCCEEEEEeCCCCceEE
Q psy7272 195 FENVEGVVTLIPFQEALCYV 214 (275)
Q Consensus 195 I~~~e~~vtL~~~s~a~t~V 214 (275)
+...||+++++|+..-
T Consensus 322 ----et~~tL~~a~rak~I~ 337 (568)
T COG5059 322 ----ETINTLKFASRAKSIK 337 (568)
T ss_pred ----HHHHHHHHHHHHhhcC
Confidence 5556777776655433
No 30
>PF00498 FHA: FHA domain; InterPro: IPR000253 The forkhead-associated (FHA) domain [] is a phosphopeptide recognition domain found in many regulatory proteins. It displays specificity for phosphothreonine-containing epitopes but will also recognise phosphotyrosine with relatively high affinity. It spans approximately 80-100 amino acid residues folded into an 11-stranded beta sandwich, which sometimes contain small helical insertions between the loops connecting the strands []. To date, genes encoding FHA-containing proteins have been identified in eubacterial and eukaryotic but not archaeal genomes. The domain is present in a diverse range of proteins, such as kinases, phosphatases, kinesins, transcription factors, RNA-binding proteins and metabolic enzymes which partake in many different cellular processes - DNA repair, signal transduction, vesicular transport and protein degradation are just a few examples.; GO: 0005515 protein binding; PDB: 1LGQ_B 1LGP_A 2CSW_A 2PIE_A 3FM8_A 3MDB_B 3GQS_B 1UHT_A 1WLN_A 3POA_A ....
Probab=99.34 E-value=3e-12 Score=91.78 Aligned_cols=63 Identities=21% Similarity=0.377 Sum_probs=56.8
Q ss_pred ccCCCCCCCCCCcceeeecCCcccccceEEEEeCC-EEEEEeC-CCCceEECCeeecc--ceecCCCCEEEeC
Q psy7272 166 KVGSAESNLPQESQDIQLSGSHIKTEHCTFENVEG-VVTLIPF-QEALCYVNGRQISE--PTVLNTGSRVILG 234 (275)
Q Consensus 166 ~IGr~~~~~~~~~~dI~L~~~~Is~~Hc~I~~~e~-~vtL~~~-s~a~t~VNG~~I~~--~~~L~~GDrI~lG 234 (275)
+|||... ++|.+.++.|++.||.|.+.++ .++|+++ +.++|+|||+++.. +..|++||+|.||
T Consensus 2 ~iGR~~~------~di~l~~~~iSr~Ha~i~~~~~~~~~i~d~~s~ngt~vng~~l~~~~~~~L~~gd~i~~G 68 (68)
T PF00498_consen 2 TIGRSPD------CDIVLPDPSISRRHARISFDDDGQFYIEDLGSTNGTFVNGQRLGPGEPVPLKDGDIIRFG 68 (68)
T ss_dssp EEESSTT------SSEEETSTTSSTTSEEEEEETTEEEEEEESSSSS-EEETTEEESSTSEEEE-TTEEEEET
T ss_pred EEcCCCC------CCEEECCHheeeeeeEEEEeceeeEEEEeCCCCCcEEECCEEcCCCCEEECCCCCEEEcC
Confidence 5799865 9999999999999999999999 9999998 79999999999976 8899999999998
No 31
>KOG1892|consensus
Probab=99.26 E-value=6.3e-12 Score=126.13 Aligned_cols=89 Identities=38% Similarity=0.594 Sum_probs=80.1
Q ss_pred eEEEeeccccccCCCCCCCCCCcceeeecCCcccccceEEEEeCCEEEEEeC-CCCceEECCeeeccceecCCCCEEEeC
Q psy7272 156 LIYYIKDGRTKVGSAESNLPQESQDIQLSGSHIKTEHCTFENVEGVVTLIPF-QEALCYVNGRQISEPTVLNTGSRVILG 234 (275)
Q Consensus 156 Lt~~L~~~~t~IGr~~~~~~~~~~dI~L~~~~Is~~Hc~I~~~e~~vtL~~~-s~a~t~VNG~~I~~~~~L~~GDrI~lG 234 (275)
-.+-|+.+.+.||+..... ..|.|.||+|.++||.|.+.+|++|++|. -+|.|||||..|.+++.|++|+.|.||
T Consensus 371 ~ri~L~~~vtEVGs~~~~~----~~iqLfGP~IqprHc~it~meGVvTvTP~~~DA~t~VnGh~isqttiL~~G~~v~fG 446 (1629)
T KOG1892|consen 371 KRIRLQLSVTEVGSEKLDD----NSIQLFGPGIQPRHCDITNMEGVVTVTPRSMDAETYVNGHRISQTTILQSGMKVQFG 446 (1629)
T ss_pred eeEEeccCceeccccccCC----cceeeeCCCCCccccchhhccceEEecccccchhhhccceecchhhhhccCCEEEec
Confidence 3456788899999987643 69999999999999999999999999999 569999999999999999999999999
Q ss_pred CceEEEEeCCchhh
Q psy7272 235 KNHVFRFNHPDQVR 248 (275)
Q Consensus 235 ~~~~f~f~~P~~a~ 248 (275)
..|.|+|.++.+..
T Consensus 447 a~hsfkF~dss~d~ 460 (1629)
T KOG1892|consen 447 ASHSFKFVDSSQDH 460 (1629)
T ss_pred cceeEEecCCchhh
Confidence 99999999996544
No 32
>cd00060 FHA Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins localize to the nucleus, where they participate in establishing or maintaining cell cycle checkpoints, DNA repair, or transcriptional regulation. Members of the FHA family include: Dun1, Rad53, Cds1, Mek1, KAPP(kinase-associated protein phosphatase),and Ki-67 (a human nuclear protein related to cell proliferation).
Probab=99.09 E-value=8e-10 Score=84.27 Aligned_cols=82 Identities=30% Similarity=0.534 Sum_probs=70.2
Q ss_pred eeEEEeec-cccccCCCCCCCCCCcc-eeeecCCcccccceEEEEeC-CEEEEEeC-CCCceEECCeeec--cceecCCC
Q psy7272 155 CLIYYIKD-GRTKVGSAESNLPQESQ-DIQLSGSHIKTEHCTFENVE-GVVTLIPF-QEALCYVNGRQIS--EPTVLNTG 228 (275)
Q Consensus 155 ~Lt~~L~~-~~t~IGr~~~~~~~~~~-dI~L~~~~Is~~Hc~I~~~e-~~vtL~~~-s~a~t~VNG~~I~--~~~~L~~G 228 (275)
...+.|.. ....|||... + +|.+.+..|++.||.|.... +.+++.+. +.++++|||.++. .+..|.+|
T Consensus 13 ~~~~~l~~~~~~~iGr~~~------~~~i~l~~~~iS~~H~~i~~~~~~~~~~~~~~s~~g~~vn~~~~~~~~~~~l~~g 86 (102)
T cd00060 13 GRRYYLDPGGTYTIGRDSD------NCDIVLDDPSVSRRHAVIRYDGDGGVVLIDLGSTNGTFVNGQRVSPGEPVRLRDG 86 (102)
T ss_pred eeEEEECCCCeEEECcCCC------cCCEEcCCCCeeCcceEEEEcCCCCEEEEECCCCCCeEECCEECCCCCcEECCCC
Confidence 45667777 8889999887 6 99999999999999999987 66666665 8899999999998 78999999
Q ss_pred CEEEeCC-ceEEEEe
Q psy7272 229 SRVILGK-NHVFRFN 242 (275)
Q Consensus 229 DrI~lG~-~~~f~f~ 242 (275)
|+|.+|. .+.|+|.
T Consensus 87 d~i~ig~~~~~~~~~ 101 (102)
T cd00060 87 DVIRLGNTSISFRFE 101 (102)
T ss_pred CEEEECCeEEEEEEe
Confidence 9999997 6667764
No 33
>TIGR03354 VI_FHA type VI secretion system FHA domain protein. Members of this protein family are FHA (forkhead-associated) domain-containing proteins that are part of type VI secretion loci in a considerable number of bacteria, most of which are known pathogens. Species include Pseudomonas aeruginosa PAO1, Aeromonas hydrophila, Yersinia pestis, Burkholderia mallei, etc.
Probab=98.99 E-value=1.6e-09 Score=103.24 Aligned_cols=84 Identities=19% Similarity=0.360 Sum_probs=72.2
Q ss_pred eeEEEeeccccccCCCCCCCCCCcceeeecCCc--ccccceEEEEeCCEEEEEeCCCCceEEC--Ceeecc--ceecCCC
Q psy7272 155 CLIYYIKDGRTKVGSAESNLPQESQDIQLSGSH--IKTEHCTFENVEGVVTLIPFQEALCYVN--GRQISE--PTVLNTG 228 (275)
Q Consensus 155 ~Lt~~L~~~~t~IGr~~~~~~~~~~dI~L~~~~--Is~~Hc~I~~~e~~vtL~~~s~a~t~VN--G~~I~~--~~~L~~G 228 (275)
...+.+.....+|||... |++++.++. |++.||.|...++.++|++.+.++|||| |.+|.. +..|++|
T Consensus 16 ~~~~~f~~~~~~IGR~~~------~d~~l~d~~~~VS~~Ha~I~~~~g~~~l~DlStNGT~VN~sg~~l~~~~~~~L~~G 89 (396)
T TIGR03354 16 AAQKTFGTNGGTIGRSED------CDWVLPDPERHVSGRHARIRYRDGAYLLTDLSTNGVFLNGSGSPLGRGNPVRLEQG 89 (396)
T ss_pred ceEEEECCCCEEEecCCC------CCEEeCCCCCCcchhhcEEEEECCEEEEEECCCCCeEECCCCCCCCCCCceEcCCC
Confidence 346677777789999887 999999998 9999999999999999999998999999 899976 7899999
Q ss_pred CEEEeCCceE-EEEeCC
Q psy7272 229 SRVILGKNHV-FRFNHP 244 (275)
Q Consensus 229 DrI~lG~~~~-f~f~~P 244 (275)
|+|.||...+ |.+.+|
T Consensus 90 D~I~iG~~~lrv~~~~~ 106 (396)
T TIGR03354 90 DRLRLGDYEIRVSLGDP 106 (396)
T ss_pred CEEEECCEEEEEEeCCC
Confidence 9999997555 333444
No 34
>COG1716 FOG: FHA domain [Signal transduction mechanisms]
Probab=98.75 E-value=5e-08 Score=83.25 Aligned_cols=69 Identities=23% Similarity=0.366 Sum_probs=64.4
Q ss_pred ccccCCCCCCCCCCcceeeecCCcccccceEEEEeCCEEEEEeC-CCCceEECCeeeccceecCCCCEEEeCCceE
Q psy7272 164 RTKVGSAESNLPQESQDIQLSGSHIKTEHCTFENVEGVVTLIPF-QEALCYVNGRQISEPTVLNTGSRVILGKNHV 238 (275)
Q Consensus 164 ~t~IGr~~~~~~~~~~dI~L~~~~Is~~Hc~I~~~e~~vtL~~~-s~a~t~VNG~~I~~~~~L~~GDrI~lG~~~~ 238 (275)
..+|||... ++|.+.+..|++.||.+...+..++++++ |.++|||||.++.....|.+||.|.||.+..
T Consensus 90 ~~tigr~~~------~~i~~~~~~vSR~Ha~l~~~~~~~~~~d~~S~nGt~vn~~~v~~~~~l~~gd~i~i~~~~~ 159 (191)
T COG1716 90 VTTIGRDPD------NDIVLDDDVVSRRHAELRREGNEVFLEDLGSTNGTYVNGEKVRQRVLLQDGDVIRLGGTLA 159 (191)
T ss_pred eEEeccCCC------CCEEcCCCccccceEEEEEeCCceEEEECCCCcceEECCeEccCcEEcCCCCEEEECccce
Confidence 778999665 89999999999999999999999999999 8999999999999889999999999997666
No 35
>COG3456 Predicted component of the type VI protein secretion system, contains a FHA domain [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.75 E-value=2.5e-08 Score=93.70 Aligned_cols=79 Identities=22% Similarity=0.407 Sum_probs=67.6
Q ss_pred EEEeeccccccCCCCCCCCCCcceeeecCC--cccccceEEEEeCCEEEEEeCCCCceEECCeeec--cc-eecCCCCEE
Q psy7272 157 IYYIKDGRTKVGSAESNLPQESQDIQLSGS--HIKTEHCTFENVEGVVTLIPFQEALCYVNGRQIS--EP-TVLNTGSRV 231 (275)
Q Consensus 157 t~~L~~~~t~IGr~~~~~~~~~~dI~L~~~--~Is~~Hc~I~~~e~~vtL~~~s~a~t~VNG~~I~--~~-~~L~~GDrI 231 (275)
.+.+..+...|||+.. |+.+|.++ .|++.||.|.+.+|.++|++.|+++++|||..+. +. ..|++||+|
T Consensus 20 q~~f~~~~g~IGrs~d------cdW~i~D~~~~VS~~Hc~I~~~dg~f~L~DtS~g~l~VNgs~~~~g~~~~RLqqGd~i 93 (430)
T COG3456 20 QKLFDRGGGVIGRSPD------CDWQIDDPERFVSKQHCTISYRDGGFCLTDTSNGGLLVNGSDLPLGEGSARLQQGDEI 93 (430)
T ss_pred hhhhhcCCcccccCCC------CCccccCcccccchhheEEEecCCeEEEEecCCCceeecccccCCCCCccccccCCEE
Confidence 3566677889999887 99999775 5999999999999999999999999999998884 45 689999999
Q ss_pred EeCCceEEEEe
Q psy7272 232 ILGKNHVFRFN 242 (275)
Q Consensus 232 ~lG~~~~f~f~ 242 (275)
.|| .++|+..
T Consensus 94 ~iG-~y~i~V~ 103 (430)
T COG3456 94 LIG-RYIIRVH 103 (430)
T ss_pred eec-cEEEEEE
Confidence 999 5665553
No 36
>smart00240 FHA Forkhead associated domain. Found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain.
Probab=98.45 E-value=3.4e-07 Score=61.62 Aligned_cols=48 Identities=31% Similarity=0.473 Sum_probs=42.9
Q ss_pred ccCCCC-CCCCCCcceeeecCCcccccceEEEEeCCE-EEEEeCC-CCceEECCeee
Q psy7272 166 KVGSAE-SNLPQESQDIQLSGSHIKTEHCTFENVEGV-VTLIPFQ-EALCYVNGRQI 219 (275)
Q Consensus 166 ~IGr~~-~~~~~~~~dI~L~~~~Is~~Hc~I~~~e~~-vtL~~~s-~a~t~VNG~~I 219 (275)
.|||.. . ++|.+.++.+++.||.|....+. ++|.|++ .+++||||++|
T Consensus 2 ~iGr~~~~------~~i~~~~~~vs~~H~~i~~~~~~~~~i~d~~s~~gt~vng~~v 52 (52)
T smart00240 2 TIGRSSED------CDIQLPGPSISRRHAEIVYDGGGRFYLIDLGSTNGTFVNGKRI 52 (52)
T ss_pred EeCCCCCC------CCEEeCCCCcchhHcEEEECCCCeEEEEECCCCCCeeECCEEC
Confidence 579887 4 89999999999999999988765 9999995 89999999975
No 37
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=98.43 E-value=5.8e-07 Score=90.84 Aligned_cols=81 Identities=20% Similarity=0.297 Sum_probs=65.2
Q ss_pred eccccccCCCCCCCCCCcceeeecCCcccccceEEEEeCCEEEEEeC-CCCceEECCee---ec----cceecCCCCEEE
Q psy7272 161 KDGRTKVGSAESNLPQESQDIQLSGSHIKTEHCTFENVEGVVTLIPF-QEALCYVNGRQ---IS----EPTVLNTGSRVI 232 (275)
Q Consensus 161 ~~~~t~IGr~~~~~~~~~~dI~L~~~~Is~~Hc~I~~~e~~vtL~~~-s~a~t~VNG~~---I~----~~~~L~~GDrI~ 232 (275)
.+..+.||+.+.... ....|++.++.||..||.|...++.++|+|+ |.|+|||||.. |. .++.|++||.|.
T Consensus 555 ~~~p~~iG~~~~~~~-~~~~i~i~~~~vS~~Ha~i~~~~~~~~~~Dl~S~nGT~v~~~~~~r~~~~p~~~~~l~~~d~I~ 633 (668)
T PLN02927 555 EDQPCIVGSEPDQDF-PGMRIVIPSSQVSKMHARVIYKDGAFFLMDLRSEHGTYVTDNEGRRYRATPNFPARFRSSDIIE 633 (668)
T ss_pred CCCCeEecCCCCcCC-CCceEEecCCccChhHeEEEEECCEEEEEECCCCCccEEeCCCCceEecCCCCceEeCCCCEEE
Confidence 344678999876210 0123699999999999999999999999999 89999997766 86 589999999999
Q ss_pred eCCce--EEEEe
Q psy7272 233 LGKNH--VFRFN 242 (275)
Q Consensus 233 lG~~~--~f~f~ 242 (275)
||... .||..
T Consensus 634 ~g~~~~~~fr~~ 645 (668)
T PLN02927 634 FGSDKKAAFRVK 645 (668)
T ss_pred eCCCcceeEEEE
Confidence 99753 57654
No 38
>KOG0241|consensus
Probab=98.22 E-value=1.1e-06 Score=89.29 Aligned_cols=52 Identities=42% Similarity=0.701 Sum_probs=47.8
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccC
Q psy7272 17 VIAEEAVDQLQASEKLIAELNETWEEKLKRTEEIRIQREAVFAEMGVAVKED 68 (275)
Q Consensus 17 ~~~~~~~~~L~e~E~L~~el~~t~EE~L~~~e~~~~~r~~~~t~~~~~~~~s 68 (275)
+..+++.++|+|+|+||+|++.+|||+|+++|.+.++|+..++.|+++...|
T Consensus 386 ~~~~el~e~l~esekli~ei~~twEEkl~ktE~in~erq~~L~~~gis~~~s 437 (1714)
T KOG0241|consen 386 MKLPELKEKLEESEKLIKEITVTWEEKLRKTEEINQERQAQLESMGISLENS 437 (1714)
T ss_pred ccchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4578899999999999999999999999999999999999999999886533
No 39
>KOG0245|consensus
Probab=97.92 E-value=2e-05 Score=81.05 Aligned_cols=56 Identities=59% Similarity=0.887 Sum_probs=51.5
Q ss_pred cCCcchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccCC
Q psy7272 14 PASVIAEEAVDQLQASEKLIAELNETWEEKLKRTEEIRIQREAVFAEMGVAVKEDG 69 (275)
Q Consensus 14 ~~~~~~~~~~~~L~e~E~L~~el~~t~EE~L~~~e~~~~~r~~~~t~~~~~~~~ss 69 (275)
+..+..+++.++|+|.|+.|+||+++|+|||+.+|.++++|...+.+||+..+..+
T Consensus 395 ~~~~~~e~~~~~L~E~Ek~mael~etW~EKl~~aEair~e~~~~L~emGva~~~D~ 450 (1221)
T KOG0245|consen 395 LSQPEIEELRERLQETEKIMAELNETWEEKLREAEAIRMEREALLAEMGVAVREDG 450 (1221)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCceeeecC
Confidence 45677899999999999999999999999999999999999999999998876555
No 40
>KOG1882|consensus
Probab=96.73 E-value=0.0023 Score=56.62 Aligned_cols=65 Identities=15% Similarity=0.220 Sum_probs=52.1
Q ss_pred cccCCCCCCCCCCcceeeecCCcccccceEEEEe-------CC------EEEEEeC-CCCceEECCeeeccc--eecCCC
Q psy7272 165 TKVGSAESNLPQESQDIQLSGSHIKTEHCTFENV-------EG------VVTLIPF-QEALCYVNGRQISEP--TVLNTG 228 (275)
Q Consensus 165 t~IGr~~~~~~~~~~dI~L~~~~Is~~Hc~I~~~-------e~------~vtL~~~-s~a~t~VNG~~I~~~--~~L~~G 228 (275)
-.+|+..- + +||.+.-++.+.+||.|++. +| ..+|.++ |+|+||+|.++|... .+|..+
T Consensus 196 yL~gRerk--I---aDi~idhpScSKQHaviQyR~v~~~r~dGt~grrvkpYiiDLgS~NgTfLNnk~IepqRYyEL~ek 270 (293)
T KOG1882|consen 196 YLDGRERK--I---ADIPIDHPSCSKQHAVIQYRLVEFTRADGTVGRRVKPYIIDLGSGNGTFLNNKVIEPQRYYELREK 270 (293)
T ss_pred eecCceee--e---eccCCCCccccccceeeeeeecccccCCCccceeeeeEEEecCCCCcceecCcccCchheeeeecC
Confidence 35577332 3 89999999999999999864 22 3467787 899999999999643 479999
Q ss_pred CEEEeC
Q psy7272 229 SRVILG 234 (275)
Q Consensus 229 DrI~lG 234 (275)
|.|.||
T Consensus 271 Dvlkfg 276 (293)
T KOG1882|consen 271 DVLKFG 276 (293)
T ss_pred ceeeec
Confidence 999999
No 41
>TIGR02500 type_III_yscD type III secretion apparatus protein, YscD/HrpQ family. This family represents a conserved protein of bacterial type III secretion systems. Gene symbols are variable from species to species. Members are designated YscD in Yersinia, HrpQ in Pseudomonas syringae, and EscD in enteropathogenic Escherichia coli. In the Chlamydiae, this model describes the C-terminal 400 residues of a longer protein.
Probab=95.55 E-value=0.042 Score=52.87 Aligned_cols=80 Identities=23% Similarity=0.248 Sum_probs=65.7
Q ss_pred eEEEeeccccccC-CCCCCCCCCcceeeecCCcccccceEEEEeCCEEEEEeCCCCceEECC--eeeccceecCCCCEEE
Q psy7272 156 LIYYIKDGRTKVG-SAESNLPQESQDIQLSGSHIKTEHCTFENVEGVVTLIPFQEALCYVNG--RQISEPTVLNTGSRVI 232 (275)
Q Consensus 156 Lt~~L~~~~t~IG-r~~~~~~~~~~dI~L~~~~Is~~Hc~I~~~e~~vtL~~~s~a~t~VNG--~~I~~~~~L~~GDrI~ 232 (275)
..+.|..+..+|| +..+ +||.|.+++++++|+.|......+.+... ..++.+|| .+..+...|..+-.|.
T Consensus 13 ~~~~L~~g~~~iG~~~~~------~di~L~d~~~~~~h~~l~v~~~~~~l~~~-~~~~~~~g~~~~~~~g~~l~~~~~l~ 85 (410)
T TIGR02500 13 AELPLPEGNLVLGTDAAD------CDIVLSDGGIAAVHVSLHVRLEGVTLAGA-VEPAWEEGGVLPDEEGTPLPSGTPLL 85 (410)
T ss_pred cEEECCCCceEeccCCCC------cEEEeCCCCccchheEEEEcCceEEEecC-CcceeECCcccccCCCCccCCCCcee
Confidence 3466778888899 6655 99999999999999999998888888854 22488999 7777778899999999
Q ss_pred eCCceEEEEeC
Q psy7272 233 LGKNHVFRFNH 243 (275)
Q Consensus 233 lG~~~~f~f~~ 243 (275)
+| ...|.|.+
T Consensus 86 ~g-~~~~~~g~ 95 (410)
T TIGR02500 86 VA-GVAFALGE 95 (410)
T ss_pred cc-eeEEeccC
Confidence 99 67788865
No 42
>KOG0615|consensus
Probab=95.06 E-value=0.036 Score=53.04 Aligned_cols=77 Identities=18% Similarity=0.274 Sum_probs=58.7
Q ss_pred ccccccCCCCCCCCCCcceeeecCCcccccceEEEEe---------------CCEEEEEeCCCCceEECCeeec--ccee
Q psy7272 162 DGRTKVGSAESNLPQESQDIQLSGSHIKTEHCTFENV---------------EGVVTLIPFQEALCYVNGRQIS--EPTV 224 (275)
Q Consensus 162 ~~~t~IGr~~~~~~~~~~dI~L~~~~Is~~Hc~I~~~---------------e~~vtL~~~s~a~t~VNG~~I~--~~~~ 224 (275)
+....+||.+. +|..+....++..|-.+..- ...+++.+.++++|+||..++. ....
T Consensus 63 nd~f~fGR~~~------~d~~ln~~~~s~~~~~i~~~~~~~~~~f~~dr~~~sn~~y~~DhS~nGT~VN~e~i~k~~~r~ 136 (475)
T KOG0615|consen 63 NDEFTFGRGDS------CDAPLNLNNVSNKHFKILLYNKISKIHFRIDRDKNSNRVYLHDHSRNGTFVNDEMIGKGLSRI 136 (475)
T ss_pred cceEEecCCCc------ccccccCccccccchheeeeeeeeeeeecccCCCccceEEEEecccCcccccHhHhhcccccc
Confidence 34566788866 77777777677766655421 2478899999999999999985 4678
Q ss_pred cCCCCEEEeCCc--eEEEEeCC
Q psy7272 225 LNTGSRVILGKN--HVFRFNHP 244 (275)
Q Consensus 225 L~~GDrI~lG~~--~~f~f~~P 244 (275)
|++||.|.||.. ..|.|.++
T Consensus 137 lkN~dei~is~p~~~~~v~~~~ 158 (475)
T KOG0615|consen 137 LKNGDEISISIPALKIFVFEDL 158 (475)
T ss_pred ccCCCEEEeccchhheeeeecc
Confidence 999999999954 35889887
No 43
>KOG1881|consensus
Probab=95.04 E-value=0.015 Score=58.72 Aligned_cols=77 Identities=13% Similarity=0.199 Sum_probs=61.8
Q ss_pred cccccCCCCCCCCCCcceeeecCCcccccceEEEEeC-----------CEEEEEeC-CCCceEECCeeeccce--ecCCC
Q psy7272 163 GRTKVGSAESNLPQESQDIQLSGSHIKTEHCTFENVE-----------GVVTLIPF-QEALCYVNGRQISEPT--VLNTG 228 (275)
Q Consensus 163 ~~t~IGr~~~~~~~~~~dI~L~~~~Is~~Hc~I~~~e-----------~~vtL~~~-s~a~t~VNG~~I~~~~--~L~~G 228 (275)
+...+||... ||+.+.-|+|++.||.+.+.. -.++|.++ ++.++++|-.+|..++ .++-|
T Consensus 177 ~~~~fgr~~~------cD~~~eHpsISr~h~vlQy~~~~~~~p~~s~~~g~~i~dlgsThgt~~NK~rvppk~yir~~Vg 250 (793)
T KOG1881|consen 177 AACLFGRLGG------CDVALEHPSISRFHAVLQYKASGPDDPCASNGEGWYIYDLGSTHGTFLNKDRVPPKVYIRDRVG 250 (793)
T ss_pred eeEEecccCC------CccccccCcccccceeeeccCCCCCccccCCCCceEEeeccccccceeccccCCCcchhhhhHH
Confidence 3457888765 999999999999999999641 13777777 8999999999998765 47889
Q ss_pred CEEEeCCce-EEEEeCCc
Q psy7272 229 SRVILGKNH-VFRFNHPD 245 (275)
Q Consensus 229 DrI~lG~~~-~f~f~~P~ 245 (275)
+.+.||... +|.|..|.
T Consensus 251 ~v~~fggsTrl~i~Qgp~ 268 (793)
T KOG1881|consen 251 HVARFGGSTRLYIFQGPE 268 (793)
T ss_pred HHHHhcCceEEEEeeCCC
Confidence 999999644 57788774
No 44
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=94.98 E-value=0.0066 Score=60.80 Aligned_cols=67 Identities=34% Similarity=0.456 Sum_probs=52.1
Q ss_pred ccCCceeeEEeeeeeeecCCCCcceeEeeeEEeeccCcccccccCccccccccccccccchhhHHHHHHHhh
Q psy7272 66 KEDGNTVGVFSPQKAVDDMTDLTTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALA 137 (275)
Q Consensus 66 ~~ssrsh~if~i~~~~~~~~~~~~~~~s~l~lvDLAGSEr~~~~~~~~~~~~E~~~IN~SL~~Lg~vi~al~ 137 (275)
.+++++|++|.............. . +++|||||+||. .+...|.++++..++|++|..+|.+|.++.
T Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~~~---~-~n~~~~~~~e~~-~s~~~~~~l~~~~~~~k~l~~~~d~~~~~~ 566 (568)
T COG5059 500 LRSSRSHSKFRDHLNGSNSSTKEL---S-LNQVDLAGSERK-VSQSVGELLRETQSLNKSLSSLGDVIHALG 566 (568)
T ss_pred hhhcccchhhhhcccchhhhhHHH---H-hhhhhccccccc-hhhhhHHHHHhhHhhhhccccchhhhhhcc
Confidence 558899999974332111111111 1 899999999999 999999999999999999999999998764
No 45
>PRK01777 hypothetical protein; Validated
Probab=94.45 E-value=0.032 Score=42.79 Aligned_cols=45 Identities=20% Similarity=0.301 Sum_probs=36.1
Q ss_pred CCCceEECCeeeccceecCCCCEEEeCCceEEEEeCCchhhhhhhccC
Q psy7272 208 QEALCYVNGRQISEPTVLNTGSRVILGKNHVFRFNHPDQVRVHRENKK 255 (275)
Q Consensus 208 s~a~t~VNG~~I~~~~~L~~GDrI~lG~~~~f~f~~P~~a~~~r~~~~ 255 (275)
+.+.+.|||+.+.-...|++||||.|=.-- -.||.++|..|....
T Consensus 48 ~~~~vgI~Gk~v~~d~~L~dGDRVeIyrPL---~~DPk~~Rr~ra~~~ 92 (95)
T PRK01777 48 AKNKVGIYSRPAKLTDVLRDGDRVEIYRPL---LADPKELRRKRAEQA 92 (95)
T ss_pred ccceEEEeCeECCCCCcCCCCCEEEEecCC---CCCHHHHHHHHHHhh
Confidence 346789999999989999999999876332 259999999987543
No 46
>KOG2293|consensus
Probab=91.46 E-value=0.45 Score=46.71 Aligned_cols=87 Identities=18% Similarity=0.313 Sum_probs=67.8
Q ss_pred eEEEeeccccccCCCCCCCCCCcceeeec----CCcccccceEEEEe-CCEEEEEeCCCCceEECCeeec--cceecCCC
Q psy7272 156 LIYYIKDGRTKVGSAESNLPQESQDIQLS----GSHIKTEHCTFENV-EGVVTLIPFQEALCYVNGRQIS--EPTVLNTG 228 (275)
Q Consensus 156 Lt~~L~~~~t~IGr~~~~~~~~~~dI~L~----~~~Is~~Hc~I~~~-e~~vtL~~~s~a~t~VNG~~I~--~~~~L~~G 228 (275)
..|+++....++||+....+ .||-|. +..|+++.+.|... +|.+.|.-+.+-..+|||.+|. +...|++.
T Consensus 441 skh~mrk~EVtlGRat~d~~---VDIDLgkegpatKISRRQa~IkL~n~GsF~IkNlGK~~I~vng~~l~~gq~~~L~~n 517 (547)
T KOG2293|consen 441 SKHYMRKKEVTLGRATGDLK---VDIDLGKEGPATKISRRQALIKLKNDGSFFIKNLGKRSILVNGGELDRGQKVILKNN 517 (547)
T ss_pred hHhhhcCcceEeeccCCCcc---eeeeccccCccceeeccceeEEeccCCcEEeccCcceeEEeCCccccCCceEEeccC
Confidence 45778888889999988766 788773 34599999999865 5778888888889999999996 45678888
Q ss_pred CEEEeCCceEEEEeCCch
Q psy7272 229 SRVILGKNHVFRFNHPDQ 246 (275)
Q Consensus 229 DrI~lG~~~~f~f~~P~~ 246 (275)
-.|.|- .--|.|..-.+
T Consensus 518 clveIr-g~~FiF~~N~~ 534 (547)
T KOG2293|consen 518 CLVEIR-GLRFIFEINQE 534 (547)
T ss_pred cEEEEc-cceEEEeecHH
Confidence 888886 45577765443
No 47
>TIGR02988 YaaA_near_RecF S4 domain protein YaaA. This small protein has a single S4 domain (pfam01479), as do bacterial ribosomal protein S4, some pseudouridine synthases, tyrosyl-tRNA synthetases. The S4 domain may bind RNA. Members of this protein family are found almost exclusively in the Firmicutes, and almost invariably just a few nucleotides upstream of the gene for the DNA replication and repair protein RecF. The few members of this family that are not near recF are found instead near dnaA and/or dnaN, the usual neighbors of recF, near the origin of replication. The conserved location suggests a possible role in replication in the Firmicutes lineage.
Probab=83.17 E-value=1.4 Score=30.29 Aligned_cols=26 Identities=27% Similarity=0.286 Sum_probs=21.5
Q ss_pred CCCceEECCeeec-cceecCCCCEEEe
Q psy7272 208 QEALCYVNGRQIS-EPTVLNTGSRVIL 233 (275)
Q Consensus 208 s~a~t~VNG~~I~-~~~~L~~GDrI~l 233 (275)
....++|||..++ ....|..||+|.+
T Consensus 32 ~~G~V~VNg~~~~~~~~~l~~Gd~v~i 58 (59)
T TIGR02988 32 QENEVLVNGELENRRGKKLYPGDVIEI 58 (59)
T ss_pred HcCCEEECCEEccCCCCCCCCCCEEEe
Confidence 4567999999995 4678999999976
No 48
>KOG1880|consensus
Probab=80.30 E-value=3.5 Score=38.01 Aligned_cols=83 Identities=16% Similarity=0.259 Sum_probs=62.7
Q ss_pred cccCCCCCCCCCCcceeeecCCcccccceEEEEeC--CEEEEEeC-CCCceEECCeeec--cceecCCCCEEEeCCc---
Q psy7272 165 TKVGSAESNLPQESQDIQLSGSHIKTEHCTFENVE--GVVTLIPF-QEALCYVNGRQIS--EPTVLNTGSRVILGKN--- 236 (275)
Q Consensus 165 t~IGr~~~~~~~~~~dI~L~~~~Is~~Hc~I~~~e--~~vtL~~~-s~a~t~VNG~~I~--~~~~L~~GDrI~lG~~--- 236 (275)
-.+||.... ||..+.-.+.|+.|+.+.++. ..++|.++ +..+||+-..++. ++++|.-|--..||..
T Consensus 40 y~Fgrn~q~-----~df~idh~scSrvhaa~vyhkhl~~~~lidl~s~hgtf~g~~rL~~~~p~~l~i~~~~~fgasTr~ 114 (337)
T KOG1880|consen 40 YLFGRNHQT-----CDFVIDHASCSRVHAALVYHKHLSRIFLIDLGSTHGTFLGNERLEPHKPVQLEIGSTFHFGASTRI 114 (337)
T ss_pred hhhccCCCc-----cceEeecchhhhhHhhhhhhhccceEEEEEccCCcceeeeeeeeccCCCccccCCceEEEecccee
Confidence 356886654 899999999999999988654 45788888 8889999888885 5788999999999853
Q ss_pred eEEEEeCCchhhhhhh
Q psy7272 237 HVFRFNHPDQVRVHRE 252 (275)
Q Consensus 237 ~~f~f~~P~~a~~~r~ 252 (275)
+++|-..++.+...+.
T Consensus 115 y~lr~k~~~~~~~~~d 130 (337)
T KOG1880|consen 115 YLLREKTEHHSLVSRD 130 (337)
T ss_pred eeeecccCccccccCC
Confidence 3455565555444444
No 49
>smart00363 S4 S4 RNA-binding domain.
Probab=80.07 E-value=2.7 Score=27.43 Aligned_cols=27 Identities=15% Similarity=0.359 Sum_probs=22.2
Q ss_pred CCceEECCeee-ccceecCCCCEEEeCC
Q psy7272 209 EALCYVNGRQI-SEPTVLNTGSRVILGK 235 (275)
Q Consensus 209 ~a~t~VNG~~I-~~~~~L~~GDrI~lG~ 235 (275)
...++|||.++ .....|..||.|.+-.
T Consensus 25 ~g~i~vng~~~~~~~~~l~~gd~i~~~~ 52 (60)
T smart00363 25 QGRVKVNGKKVTKPSYIVKPGDVISVRG 52 (60)
T ss_pred cCCEEECCEEecCCCeEeCCCCEEEEcc
Confidence 45789999999 6677899999998863
No 50
>PRK06437 hypothetical protein; Provisional
Probab=79.73 E-value=2.2 Score=30.28 Aligned_cols=26 Identities=23% Similarity=0.387 Sum_probs=22.1
Q ss_pred CCCceEECCeeeccceecCCCCEEEe
Q psy7272 208 QEALCYVNGRQISEPTVLNTGSRVIL 233 (275)
Q Consensus 208 s~a~t~VNG~~I~~~~~L~~GDrI~l 233 (275)
....+.+||..|...+.|++||+|.+
T Consensus 35 ~~vaV~vNg~iv~~~~~L~dgD~Vei 60 (67)
T PRK06437 35 EEYVVIVNGSPVLEDHNVKKEDDVLI 60 (67)
T ss_pred ccEEEEECCEECCCceEcCCCCEEEE
Confidence 34467899999999999999999876
No 51
>PF01479 S4: S4 domain; InterPro: IPR002942 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterised, small proteins that may be involved in translation regulation []. The S4 domain probably mediates binding to RNA.; GO: 0003723 RNA binding; PDB: 3BBU_A 1DM9_B 2K6P_A 3U5G_E 3U5C_E 3IZB_D 2XZM_D 2XZN_D 3O30_E 3O2Z_E ....
Probab=78.06 E-value=1.9 Score=28.10 Aligned_cols=23 Identities=17% Similarity=0.408 Sum_probs=19.4
Q ss_pred CCceEECCeeec-cceecCCCCEE
Q psy7272 209 EALCYVNGRQIS-EPTVLNTGSRV 231 (275)
Q Consensus 209 ~a~t~VNG~~I~-~~~~L~~GDrI 231 (275)
...++|||+.+. ....++.||+|
T Consensus 25 ~g~V~VNg~~v~~~~~~v~~~d~I 48 (48)
T PF01479_consen 25 QGRVKVNGKVVKDPSYIVKPGDVI 48 (48)
T ss_dssp TTTEEETTEEESSTTSBESTTEEE
T ss_pred CCEEEECCEEEcCCCCCCCCcCCC
Confidence 467999999998 56689999987
No 52
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=78.01 E-value=2.2 Score=30.63 Aligned_cols=24 Identities=29% Similarity=0.347 Sum_probs=21.2
Q ss_pred CceEECCeeeccceecCCCCEEEe
Q psy7272 210 ALCYVNGRQISEPTVLNTGSRVIL 233 (275)
Q Consensus 210 a~t~VNG~~I~~~~~L~~GDrI~l 233 (275)
..++|||+.+...+.|++||+|.|
T Consensus 50 ~~v~vNg~~v~~~~~l~~gD~v~i 73 (80)
T cd00754 50 VRIAVNGEYVRLDTPLKDGDEVAI 73 (80)
T ss_pred EEEEECCeEcCCCcccCCCCEEEE
Confidence 368999999988889999999976
No 53
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=75.13 E-value=3.1 Score=29.08 Aligned_cols=24 Identities=25% Similarity=0.447 Sum_probs=20.5
Q ss_pred CceEECCeeeccc----eecCCCCEEEe
Q psy7272 210 ALCYVNGRQISEP----TVLNTGSRVIL 233 (275)
Q Consensus 210 a~t~VNG~~I~~~----~~L~~GDrI~l 233 (275)
..+.|||+.|... +.|++||+|.|
T Consensus 31 i~V~vNg~~v~~~~~~~~~L~~gD~V~i 58 (65)
T cd00565 31 VAVALNGEIVPRSEWASTPLQDGDRIEI 58 (65)
T ss_pred EEEEECCEEcCHHHcCceecCCCCEEEE
Confidence 4578999999876 89999999876
No 54
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=74.67 E-value=3.3 Score=30.75 Aligned_cols=24 Identities=38% Similarity=0.463 Sum_probs=21.2
Q ss_pred ceEECCeeeccceecCCCCEEEeC
Q psy7272 211 LCYVNGRQISEPTVLNTGSRVILG 234 (275)
Q Consensus 211 ~t~VNG~~I~~~~~L~~GDrI~lG 234 (275)
.+.|||+.+.-...+++||+|.+=
T Consensus 51 ~i~vNG~~v~~~~~~~~Gd~v~V~ 74 (81)
T PF14451_consen 51 LILVNGRPVDFDYRLKDGDRVAVY 74 (81)
T ss_pred EEEECCEECCCcccCCCCCEEEEE
Confidence 578999999888999999999764
No 55
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=73.66 E-value=3.3 Score=28.73 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=20.7
Q ss_pred ceEECCeeeccceecCCCCEEEe
Q psy7272 211 LCYVNGRQISEPTVLNTGSRVIL 233 (275)
Q Consensus 211 ~t~VNG~~I~~~~~L~~GDrI~l 233 (275)
-+.+||-++.+...|+.||+|.|
T Consensus 31 I~I~NGF~~~~d~~L~e~D~v~~ 53 (57)
T PF14453_consen 31 IVILNGFPTKEDIELKEGDEVFL 53 (57)
T ss_pred EEEEcCcccCCccccCCCCEEEE
Confidence 46899999999999999999876
No 56
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=71.79 E-value=13 Score=37.15 Aligned_cols=66 Identities=12% Similarity=0.134 Sum_probs=45.8
Q ss_pred eccccccCCCCCCCCCCcceeeecCCcccccceEEE--EeCCEEEEEeCCCCceEECCeeec--cceecCCCCEEEeC
Q psy7272 161 KDGRTKVGSAESNLPQESQDIQLSGSHIKTEHCTFE--NVEGVVTLIPFQEALCYVNGRQIS--EPTVLNTGSRVILG 234 (275)
Q Consensus 161 ~~~~t~IGr~~~~~~~~~~dI~L~~~~Is~~Hc~I~--~~e~~vtL~~~s~a~t~VNG~~I~--~~~~L~~GDrI~lG 234 (275)
..+...+||++.+.+ .+..-+++.-.+. ...+.|.+.-+..|.+.|||+.+. ....|+|||.+-|=
T Consensus 30 ~~~~~~~gr~pet~i--------~d~~cs~~qv~l~a~~~~~~v~~k~lg~np~~~~~~~~~~~~~~~l~~g~~l~~v 99 (526)
T TIGR01663 30 DAGALFLGRGPETGI--------RDRKCSKRQIELQADLEKATVALKQLGVNPCGTGGLELKPGGEGELGHGDLLEIV 99 (526)
T ss_pred CCCceEEccCccccc--------chhhhchhhheeeecccCceEEEEEccCCCcccCceEecCCCeeeecCCCEEEEe
Confidence 344566899876433 3333333333333 235788899999999999999996 46789999998764
No 57
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=69.62 E-value=4.8 Score=28.69 Aligned_cols=24 Identities=29% Similarity=0.379 Sum_probs=21.0
Q ss_pred CceEECCeeeccceecCCCCEEEe
Q psy7272 210 ALCYVNGRQISEPTVLNTGSRVIL 233 (275)
Q Consensus 210 a~t~VNG~~I~~~~~L~~GDrI~l 233 (275)
..+.+||+.+...+.|++||+|.+
T Consensus 40 v~v~vNg~iv~~~~~l~~gD~Vei 63 (70)
T PRK08364 40 AIAKVNGKVALEDDPVKDGDYVEV 63 (70)
T ss_pred EEEEECCEECCCCcCcCCCCEEEE
Confidence 457799999998899999999876
No 58
>COG2501 S4-like RNA binding protein [Replication, recombination, and repair]
Probab=68.37 E-value=9 Score=27.91 Aligned_cols=31 Identities=23% Similarity=0.197 Sum_probs=24.9
Q ss_pred CCCceEECCeeecc-ceecCCCCEEEeCCceE
Q psy7272 208 QEALCYVNGRQISE-PTVLNTGSRVILGKNHV 238 (275)
Q Consensus 208 s~a~t~VNG~~I~~-~~~L~~GDrI~lG~~~~ 238 (275)
+.+.++|||..-+. ...|++||+|.|+...+
T Consensus 35 ~eg~V~vNGe~EtRRgkKlr~gd~V~i~~~~~ 66 (73)
T COG2501 35 AEGEVKVNGEVETRRGKKLRDGDVVEIPGQRY 66 (73)
T ss_pred HCCeEEECCeeeeccCCEeecCCEEEECCEEE
Confidence 55689999999875 45799999999995433
No 59
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=67.72 E-value=3.8 Score=29.11 Aligned_cols=26 Identities=27% Similarity=0.440 Sum_probs=22.3
Q ss_pred CCCceEECCeeecc---ceecCCCCEEEe
Q psy7272 208 QEALCYVNGRQISE---PTVLNTGSRVIL 233 (275)
Q Consensus 208 s~a~t~VNG~~I~~---~~~L~~GDrI~l 233 (275)
....+.|||+.+.. .+.|++||.|.|
T Consensus 42 ~~~~v~vN~~~v~~~~~~~~l~~gD~V~i 70 (77)
T PF02597_consen 42 DRVAVAVNGEIVPDDGLDTPLKDGDEVAI 70 (77)
T ss_dssp TTEEEEETTEEEGGGTTTSBEETTEEEEE
T ss_pred ccEEEEECCEEcCCccCCcCcCCCCEEEE
Confidence 34568999999998 899999999876
No 60
>PRK11507 ribosome-associated protein; Provisional
Probab=66.73 E-value=10 Score=27.35 Aligned_cols=30 Identities=17% Similarity=0.204 Sum_probs=23.8
Q ss_pred CCCceEECCeeecc-ceecCCCCEEEeCCce
Q psy7272 208 QEALCYVNGRQISE-PTVLNTGSRVILGKNH 237 (275)
Q Consensus 208 s~a~t~VNG~~I~~-~~~L~~GDrI~lG~~~ 237 (275)
....+.|||..-+. ...|++||.|.++...
T Consensus 35 ~eg~V~VNGeve~rRgkKl~~GD~V~~~g~~ 65 (70)
T PRK11507 35 AEGQVKVDGAVETRKRCKIVAGQTVSFAGHS 65 (70)
T ss_pred HcCceEECCEEecccCCCCCCCCEEEECCEE
Confidence 34679999998865 4579999999999643
No 61
>COG2914 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=66.35 E-value=3.9 Score=31.27 Aligned_cols=45 Identities=18% Similarity=0.290 Sum_probs=32.2
Q ss_pred CCceEECCeeeccceecCCCCEEEeCCceEEEEeCCchhhhhhhccCC
Q psy7272 209 EALCYVNGRQISEPTVLNTGSRVILGKNHVFRFNHPDQVRVHRENKKN 256 (275)
Q Consensus 209 ~a~t~VNG~~I~~~~~L~~GDrI~lG~~~~f~f~~P~~a~~~r~~~~~ 256 (275)
.|++=|=|+++.-...|++||||.+=+-. ..||.++|..|.+.+-
T Consensus 49 ~n~~GI~~k~~kl~~~l~dgDRVEIyRPL---laDPKE~RR~Ra~~~~ 93 (99)
T COG2914 49 ENKVGIYSKPVKLDDELHDGDRVEIYRPL---LADPKEARRKRAERAA 93 (99)
T ss_pred ccceeEEccccCccccccCCCEEEEeccc---ccChHHHHHHHHHHHH
Confidence 34444555677666779999999886432 4699999998876543
No 62
>cd00165 S4 S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site; Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized functional similarity between these three protein classes.
Probab=65.87 E-value=7.7 Score=25.98 Aligned_cols=27 Identities=15% Similarity=0.279 Sum_probs=21.8
Q ss_pred CCceEECCeee-ccceecCCCCEEEeCC
Q psy7272 209 EALCYVNGRQI-SEPTVLNTGSRVILGK 235 (275)
Q Consensus 209 ~a~t~VNG~~I-~~~~~L~~GDrI~lG~ 235 (275)
...++|||+.+ .....+..||.|.+..
T Consensus 25 ~g~V~vn~~~~~~~~~~v~~~d~i~i~~ 52 (70)
T cd00165 25 HGHVLVNGKVVTKPSYKVKPGDVIEVDG 52 (70)
T ss_pred cCCEEECCEEccCCccCcCCCCEEEEcC
Confidence 45789999999 5567789999988873
No 63
>COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis]
Probab=61.97 E-value=6.9 Score=30.25 Aligned_cols=30 Identities=13% Similarity=0.223 Sum_probs=24.8
Q ss_pred CCCceEECCeeeccceecCCCCEEEeCCce
Q psy7272 208 QEALCYVNGRQISEPTVLNTGSRVILGKNH 237 (275)
Q Consensus 208 s~a~t~VNG~~I~~~~~L~~GDrI~lG~~~ 237 (275)
...++.+||..+.....++.||+|.|.-.+
T Consensus 32 ~~GrV~vNG~~aKpS~~VK~GD~l~i~~~~ 61 (100)
T COG1188 32 EGGRVKVNGQRAKPSKEVKVGDILTIRFGN 61 (100)
T ss_pred HCCeEEECCEEcccccccCCCCEEEEEeCC
Confidence 456899999999878889999999887433
No 64
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=61.20 E-value=8.8 Score=27.91 Aligned_cols=23 Identities=17% Similarity=0.339 Sum_probs=20.1
Q ss_pred ceEECCeeeccceecCCCCEEEe
Q psy7272 211 LCYVNGRQISEPTVLNTGSRVIL 233 (275)
Q Consensus 211 ~t~VNG~~I~~~~~L~~GDrI~l 233 (275)
.+.|||+.+...+.|++||.|.|
T Consensus 53 ~vavN~~~v~~~~~l~dgDeVai 75 (82)
T PLN02799 53 VLALNEEYTTESAALKDGDELAI 75 (82)
T ss_pred EEEECCEEcCCCcCcCCCCEEEE
Confidence 47899999888889999999976
No 65
>PF13275 S4_2: S4 domain; PDB: 1P9K_A.
Probab=60.99 E-value=6.6 Score=27.95 Aligned_cols=27 Identities=22% Similarity=0.214 Sum_probs=15.8
Q ss_pred CceEECCeeecc-ceecCCCCEEEeCCc
Q psy7272 210 ALCYVNGRQISE-PTVLNTGSRVILGKN 236 (275)
Q Consensus 210 a~t~VNG~~I~~-~~~L~~GDrI~lG~~ 236 (275)
..+.|||...+. ...|++||.|.++..
T Consensus 33 g~V~VNGe~e~rrg~Kl~~GD~V~~~~~ 60 (65)
T PF13275_consen 33 GEVKVNGEVETRRGKKLRPGDVVEIDGE 60 (65)
T ss_dssp HHHEETTB----SS----SSEEEEETTE
T ss_pred CceEECCEEccccCCcCCCCCEEEECCE
Confidence 468999999875 457999999999743
No 66
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=60.74 E-value=9.1 Score=26.64 Aligned_cols=23 Identities=30% Similarity=0.492 Sum_probs=19.7
Q ss_pred ceEECCeeecc----ceecCCCCEEEe
Q psy7272 211 LCYVNGRQISE----PTVLNTGSRVIL 233 (275)
Q Consensus 211 ~t~VNG~~I~~----~~~L~~GDrI~l 233 (275)
.+-+||.-|.+ .+.|++||+|.|
T Consensus 32 avavN~~iv~~~~~~~~~L~dgD~Iei 58 (65)
T PRK06488 32 ATAVNGELVHKEARAQFVLHEGDRIEI 58 (65)
T ss_pred EEEECCEEcCHHHcCccccCCCCEEEE
Confidence 47899999975 778999999976
No 67
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=59.24 E-value=9.6 Score=27.60 Aligned_cols=23 Identities=26% Similarity=0.501 Sum_probs=20.2
Q ss_pred ceEECCeeeccceecCCCCEEEe
Q psy7272 211 LCYVNGRQISEPTVLNTGSRVIL 233 (275)
Q Consensus 211 ~t~VNG~~I~~~~~L~~GDrI~l 233 (275)
.+.|||+.+...+.|++||.|.|
T Consensus 51 ~v~vn~~~v~~~~~l~dgDevai 73 (80)
T TIGR01682 51 MVAVNEEYVTDDALLNEGDEVAF 73 (80)
T ss_pred EEEECCEEcCCCcCcCCCCEEEE
Confidence 47899999988899999999876
No 68
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=59.06 E-value=9.4 Score=28.08 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=18.4
Q ss_pred ceEECCeeeccce--ecCCCCEEEe
Q psy7272 211 LCYVNGRQISEPT--VLNTGSRVIL 233 (275)
Q Consensus 211 ~t~VNG~~I~~~~--~L~~GDrI~l 233 (275)
.+.|||+.+.... .|++||.|.|
T Consensus 57 ~v~vN~~~v~~~~~~~l~dgdev~i 81 (88)
T TIGR01687 57 IILVNGRNVDWGLGTELKDGDVVAI 81 (88)
T ss_pred EEEECCEecCccCCCCCCCCCEEEE
Confidence 5788998886444 8999999876
No 69
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=58.51 E-value=10 Score=27.15 Aligned_cols=25 Identities=28% Similarity=0.472 Sum_probs=21.1
Q ss_pred CCceEECCeeec----cceecCCCCEEEe
Q psy7272 209 EALCYVNGRQIS----EPTVLNTGSRVIL 233 (275)
Q Consensus 209 ~a~t~VNG~~I~----~~~~L~~GDrI~l 233 (275)
..-+.+||..|. +...|+.||+|.+
T Consensus 33 ~vav~vNg~iVpr~~~~~~~l~~gD~iev 61 (68)
T COG2104 33 GVAVAVNGEIVPRSQWADTILKEGDRIEV 61 (68)
T ss_pred eEEEEECCEEccchhhhhccccCCCEEEE
Confidence 346889999998 6788999999975
No 70
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=57.71 E-value=13 Score=25.72 Aligned_cols=24 Identities=29% Similarity=0.553 Sum_probs=19.1
Q ss_pred CceEECCeeec----cceecCCCCEEEe
Q psy7272 210 ALCYVNGRQIS----EPTVLNTGSRVIL 233 (275)
Q Consensus 210 a~t~VNG~~I~----~~~~L~~GDrI~l 233 (275)
..+.+||+.|. ..+.|++||+|.+
T Consensus 30 v~v~vN~~iv~~~~~~~~~L~~gD~vei 57 (64)
T TIGR01683 30 VAVAVNGEIVPRSEWDDTILKEGDRIEI 57 (64)
T ss_pred EEEEECCEEcCHHHcCceecCCCCEEEE
Confidence 35779999995 3468999999876
No 71
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=57.04 E-value=13 Score=25.83 Aligned_cols=23 Identities=30% Similarity=0.403 Sum_probs=18.5
Q ss_pred ceEECCeeec----cceecCCCCEEEe
Q psy7272 211 LCYVNGRQIS----EPTVLNTGSRVIL 233 (275)
Q Consensus 211 ~t~VNG~~I~----~~~~L~~GDrI~l 233 (275)
.+.+||.-|. ..+.|++||+|.+
T Consensus 33 av~vNg~iv~r~~~~~~~l~~gD~vei 59 (66)
T PRK05659 33 AVEVNGEIVPRSQHASTALREGDVVEI 59 (66)
T ss_pred EEEECCeEeCHHHcCcccCCCCCEEEE
Confidence 3678997776 6788999999876
No 72
>cd01666 TGS_DRG_C TGS_DRG_C: DRG (developmentally regulated GTP-binding protein) represents a family of GTP-binding proteins that includes two members, DRG1 and DRG2. DRG1 and DRG2 have a C-terminal TGS domain (named after the ThrRS, GTPase, and SpoT proteins where it occurs) with a predominantly beta-sheet structure. The function of TGS is unknown but its presence in two types of regulatory proteins (the DRG GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=56.88 E-value=8.6 Score=28.04 Aligned_cols=21 Identities=14% Similarity=0.132 Sum_probs=18.8
Q ss_pred EECCeeeccceecCCCCEEEe
Q psy7272 213 YVNGRQISEPTVLNTGSRVIL 233 (275)
Q Consensus 213 ~VNG~~I~~~~~L~~GDrI~l 233 (275)
-++|++|.....|++||+|.|
T Consensus 53 ~~~gq~Vgl~~~L~d~DvVeI 73 (75)
T cd01666 53 KHSPQRVGLDHVLEDEDVVQI 73 (75)
T ss_pred cCCCeECCCCCEecCCCEEEE
Confidence 369999999999999999986
No 73
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []. The TGS domain is also present at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role []. ; PDB: 1WXQ_A 1NYR_B 1NYQ_B 2KMM_A 1WWT_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A ....
Probab=55.13 E-value=10 Score=26.17 Aligned_cols=23 Identities=26% Similarity=0.326 Sum_probs=19.3
Q ss_pred ceEECCeeeccceecCCCCEEEe
Q psy7272 211 LCYVNGRQISEPTVLNTGSRVIL 233 (275)
Q Consensus 211 ~t~VNG~~I~~~~~L~~GDrI~l 233 (275)
...|||+++.-..+|++||.|.|
T Consensus 36 ~A~Vng~~vdl~~~L~~~d~v~i 58 (60)
T PF02824_consen 36 AAKVNGQLVDLDHPLEDGDVVEI 58 (60)
T ss_dssp EEEETTEEEETTSBB-SSEEEEE
T ss_pred EEEEcCEECCCCCCcCCCCEEEE
Confidence 45799999998999999999876
No 74
>PRK07440 hypothetical protein; Provisional
Probab=54.23 E-value=17 Score=25.91 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=19.9
Q ss_pred ceEECCeeec----cceecCCCCEEEe
Q psy7272 211 LCYVNGRQIS----EPTVLNTGSRVIL 233 (275)
Q Consensus 211 ~t~VNG~~I~----~~~~L~~GDrI~l 233 (275)
-+.+||.-|. +.+.|++||+|.+
T Consensus 37 av~~N~~iv~r~~w~~~~L~~gD~IEI 63 (70)
T PRK07440 37 AVEYNGEILHRQFWEQTQVQPGDRLEI 63 (70)
T ss_pred EEEECCEEeCHHHcCceecCCCCEEEE
Confidence 5789999997 6789999999875
No 75
>PRK11130 moaD molybdopterin synthase small subunit; Provisional
Probab=53.92 E-value=13 Score=27.06 Aligned_cols=23 Identities=30% Similarity=0.319 Sum_probs=19.6
Q ss_pred ceEECCeeeccceecCCCCEEEe
Q psy7272 211 LCYVNGRQISEPTVLNTGSRVIL 233 (275)
Q Consensus 211 ~t~VNG~~I~~~~~L~~GDrI~l 233 (275)
.+.||+..+...+.|++||.|.|
T Consensus 52 ~~aVN~~~~~~~~~l~dgDeVai 74 (81)
T PRK11130 52 LAAVNQTLVSFDHPLTDGDEVAF 74 (81)
T ss_pred EEEECCEEcCCCCCCCCCCEEEE
Confidence 47889988877889999999976
No 76
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=53.84 E-value=14 Score=25.45 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=18.6
Q ss_pred ceEECCeeecc----ceecCCCCEEEe
Q psy7272 211 LCYVNGRQISE----PTVLNTGSRVIL 233 (275)
Q Consensus 211 ~t~VNG~~I~~----~~~L~~GDrI~l 233 (275)
.+.+||.-+.. .+.|++||+|.+
T Consensus 32 ~v~vN~~~v~~~~~~~~~L~~gD~vei 58 (65)
T PRK06944 32 AVAVNGDFVARTQHAARALAAGDRLDL 58 (65)
T ss_pred EEEECCEEcCchhcccccCCCCCEEEE
Confidence 46899998864 567999999875
No 77
>PF14478 DUF4430: Domain of unknown function (DUF4430); PDB: 3U7Z_B 2BB5_A.
Probab=50.56 E-value=13 Score=26.24 Aligned_cols=22 Identities=27% Similarity=0.519 Sum_probs=14.7
Q ss_pred eEECCeeec---cceecCCCCEEEe
Q psy7272 212 CYVNGRQIS---EPTVLNTGSRVIL 233 (275)
Q Consensus 212 t~VNG~~I~---~~~~L~~GDrI~l 233 (275)
.+|||.... ....|++||.|.+
T Consensus 43 ~~vNG~~~~~ga~~~~l~~GD~i~~ 67 (68)
T PF14478_consen 43 YYVNGESANVGAGSYKLKDGDKITW 67 (68)
T ss_dssp EEETTEE-SS-CCC-B--TTEEEEE
T ss_pred EEECCEEhhcCcceeEeCCCCEEEe
Confidence 578999886 4678999999976
No 78
>cd01764 Urm1 Urm1-like ubuitin domain. Urm1 (Ubiquitin-Related Modifier1) The Urm1 fold, like those of two closely related proteins MoaD (molybdopterin synthase) and ThiS (sulfur carrier protein), is similar to that of ubiquitin although there is little or no sequence similarity. The C-terminal glycines of Urm1 are conjugated to an E1-like protein Uba4 as part of a novel conjugation system in yeast. The Urm1 fold is found only in eukaryotes.
Probab=47.61 E-value=16 Score=27.65 Aligned_cols=24 Identities=21% Similarity=0.412 Sum_probs=19.5
Q ss_pred ceEECCeeec----cceecCCCCEEEeC
Q psy7272 211 LCYVNGRQIS----EPTVLNTGSRVILG 234 (275)
Q Consensus 211 ~t~VNG~~I~----~~~~L~~GDrI~lG 234 (275)
-++|||..+. ..+.|++||.|.|=
T Consensus 61 ~VlvN~~di~~l~g~~t~L~dgD~v~i~ 88 (94)
T cd01764 61 IVLINDTDWELLGEEDYILEDGDHVVFI 88 (94)
T ss_pred EEEECCccccccCCcccCCCCcCEEEEE
Confidence 5899999884 46889999998763
No 79
>PRK07696 sulfur carrier protein ThiS; Provisional
Probab=46.79 E-value=23 Score=25.00 Aligned_cols=24 Identities=13% Similarity=0.185 Sum_probs=19.6
Q ss_pred CceEECCeeeccc----eecCCCCEEEe
Q psy7272 210 ALCYVNGRQISEP----TVLNTGSRVIL 233 (275)
Q Consensus 210 a~t~VNG~~I~~~----~~L~~GDrI~l 233 (275)
.-+.+||.-|.+. +.|++||+|.+
T Consensus 33 vav~vN~~iv~r~~w~~~~L~~gD~iEI 60 (67)
T PRK07696 33 VVVERNKDILQKDDHTDTSVFDGDQIEI 60 (67)
T ss_pred EEEEECCEEeCHHHcCceecCCCCEEEE
Confidence 3578999999754 88999999865
No 80
>COG0522 RpsD Ribosomal protein S4 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=44.62 E-value=25 Score=30.70 Aligned_cols=25 Identities=20% Similarity=0.535 Sum_probs=21.5
Q ss_pred CceEECCeeeccce-ecCCCCEEEeC
Q psy7272 210 ALCYVNGRQISEPT-VLNTGSRVILG 234 (275)
Q Consensus 210 a~t~VNG~~I~~~~-~L~~GDrI~lG 234 (275)
..+.|||+.|+-|. .++.||.|.+.
T Consensus 119 GHI~VnGk~V~iPSy~V~~gdei~V~ 144 (205)
T COG0522 119 GHILVNGKRVNIPSYLVSPGDEISVR 144 (205)
T ss_pred ceEEECCEEeccCcEEecCCCEEEee
Confidence 46899999998765 68999999988
No 81
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=40.99 E-value=33 Score=23.93 Aligned_cols=24 Identities=21% Similarity=0.432 Sum_probs=19.5
Q ss_pred CceEECCeeec----cceecCCCCEEEe
Q psy7272 210 ALCYVNGRQIS----EPTVLNTGSRVIL 233 (275)
Q Consensus 210 a~t~VNG~~I~----~~~~L~~GDrI~l 233 (275)
-.+-+|+.-|. +.+.|+.||.|.+
T Consensus 32 vaVavN~~iv~r~~w~~~~L~~gD~Iei 59 (66)
T PRK08053 32 AALAINQQIIPREQWAQHIVQDGDQILL 59 (66)
T ss_pred EEEEECCEEeChHHcCccccCCCCEEEE
Confidence 35789999987 4678999999876
No 82
>PRK10475 23S rRNA pseudouridine synthase F; Provisional
Probab=40.00 E-value=50 Score=30.36 Aligned_cols=38 Identities=16% Similarity=0.308 Sum_probs=27.6
Q ss_pred CCceEECCeeeccceecCCCCEEEeCC----------ceEEEEeCCch
Q psy7272 209 EALCYVNGRQISEPTVLNTGSRVILGK----------NHVFRFNHPDQ 246 (275)
Q Consensus 209 ~a~t~VNG~~I~~~~~L~~GDrI~lG~----------~~~f~f~~P~~ 246 (275)
...++|||+.+.....+..||.|.+-. .+++.++.|.-
T Consensus 30 ~G~V~VNGk~v~~~~~V~~gD~V~v~g~~i~~~~~ed~~~lvlnKP~G 77 (290)
T PRK10475 30 QGNVFINGKRATIGDQVKAGDVVKVNGQLIEPREAEDLVLIALNKPVG 77 (290)
T ss_pred CCcEEECCEEccCCCCcCCCCEEEECCEEccccccCCCeEEEEECCCC
Confidence 457899999886566788999888742 24567777753
No 83
>PRK10839 16S rRNA pseudouridylate synthase A; Provisional
Probab=39.45 E-value=56 Score=28.58 Aligned_cols=38 Identities=18% Similarity=0.215 Sum_probs=28.2
Q ss_pred CCceEECCeeec-cceecCCCCEEEeCC--------ceEEEEeCCch
Q psy7272 209 EALCYVNGRQIS-EPTVLNTGSRVILGK--------NHVFRFNHPDQ 246 (275)
Q Consensus 209 ~a~t~VNG~~I~-~~~~L~~GDrI~lG~--------~~~f~f~~P~~ 246 (275)
...++|||+.+. ....|+.||.|.+-. .+++.++.|.-
T Consensus 24 ~g~V~VNg~~~~~~~~~l~~gd~I~l~~~~~~~~~~~~~lvvnKP~G 70 (232)
T PRK10839 24 ANRVTVDGEIVKNGAFKLLPEHDVAYDGNPLAQQHGPRYFMLNKPQG 70 (232)
T ss_pred cCeEEECCEEeccCCcCcCCCCEEEECCEEcccCCCCEEEEEECCCC
Confidence 447899999986 457899999999842 24677777754
No 84
>KOG0652|consensus
Probab=38.23 E-value=51 Score=30.43 Aligned_cols=48 Identities=17% Similarity=0.234 Sum_probs=32.8
Q ss_pred ccceecCCCCEEEeCCceEEEEe-CCchhhhhhhccCCCCCCccCcccc
Q psy7272 220 SEPTVLNTGSRVILGKNHVFRFN-HPDQVRVHRENKKNASDKSESKKDK 267 (275)
Q Consensus 220 ~~~~~L~~GDrI~lG~~~~f~f~-~P~~a~~~r~~~~~~~~~~~~~~~~ 267 (275)
..+..|++||.+.+-+..++.|. -|.+-.+.-..--..+.|.|.|.|.
T Consensus 125 vd~~~LkPgDLVgvnKDsyliletLP~eyDsrVkaMevDekPtE~YsDi 173 (424)
T KOG0652|consen 125 VDPDKLKPGDLVGVNKDSYLILETLPSEYDSRVKAMEVDEKPTEQYSDI 173 (424)
T ss_pred cChhhCCCcceeeecCCceeehhcCChhhhhhcceeeeccCCccccccc
Confidence 35778999999999998888774 5655433322233366777888764
No 85
>COG1984 DUR1 Allophanate hydrolase subunit 2 [Amino acid transport and metabolism]
Probab=37.39 E-value=1.2e+02 Score=28.30 Aligned_cols=63 Identities=17% Similarity=0.383 Sum_probs=39.3
Q ss_pred ccCCCCCCCCCCcceeeecCCcccccceEEEEeCCEEEEEeCCCCceEECCeeec--cceecCCCCEEEeCCceE
Q psy7272 166 KVGSAESNLPQESQDIQLSGSHIKTEHCTFENVEGVVTLIPFQEALCYVNGRQIS--EPTVLNTGSRVILGKNHV 238 (275)
Q Consensus 166 ~IGr~~~~~~~~~~dI~L~~~~Is~~Hc~I~~~e~~vtL~~~s~a~t~VNG~~I~--~~~~L~~GDrI~lG~~~~ 238 (275)
.+||...... -.|.+.++. +++..+.++---..+...++||++|. .+..++.||++.||....
T Consensus 42 LvgN~~~aa~---lEitl~g~t-------~~f~~~~~ialTGad~~a~ld~~~i~~~~~~~vk~Gq~L~~g~~~~ 106 (314)
T COG1984 42 LVGNDDDAAA---LEITLGGPT-------LEFTSDALIALTGADCEATLDGQEVPPWSPYLVKAGQTLKLGRPKQ 106 (314)
T ss_pred hccCCCCCce---EEEecCCeE-------EEEecCcEEEEeCCcccceECCEEcCCCceEEccCCCEEEecCCCC
Confidence 4566554322 466666664 33333332222224567899999995 577899999999996543
No 86
>smart00035 CLa CLUSTERIN alpha chain.
Probab=37.38 E-value=1e+02 Score=27.18 Aligned_cols=52 Identities=10% Similarity=0.222 Sum_probs=38.9
Q ss_pred cCCCceeEEecCCcchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhc
Q psy7272 4 NEDGNIQTVAPASVIAEEAVDQLQASEKLIAELNETWEEKLKRTEEIRIQREAVFAEMG 62 (275)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~L~e~E~L~~el~~t~EE~L~~~e~~~~~r~~~~t~~~ 62 (275)
||+|+=+.+ .++..+|.|+-+|.+..++-|.+.|+.++.-.-+-...+..||
T Consensus 85 DCs~~~P~q-------~~Lr~El~eAL~LaE~ftqqYd~lL~~~q~~m~nTs~Lle~ln 136 (216)
T smart00035 85 DCSTNNPDQ-------PQLRQELDESLQLAERFTQQYDQLLQSYQKKMLNTSSLLEQLN 136 (216)
T ss_pred hccCCCcch-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 555655444 4588889999999999999999999988887666665555554
No 87
>cd01668 TGS_RelA_SpoT TGS_RelA_SpoT: The RelA (SpoT) protein, also referred to as ppGpp hydrolase/synthetase, is a ribosome-associated protein that is activated during amino acid starvation and thought to mediate the stringent response. RelA contains a TGS domain, named after the Threonyl-tRNA Synthetase, GTPase, and SpoT proteins where it occurs. The function of the TGS domain is unknown.
Probab=36.67 E-value=38 Score=22.32 Aligned_cols=22 Identities=36% Similarity=0.505 Sum_probs=18.2
Q ss_pred eEECCeeeccceecCCCCEEEe
Q psy7272 212 CYVNGRQISEPTVLNTGSRVIL 233 (275)
Q Consensus 212 t~VNG~~I~~~~~L~~GDrI~l 233 (275)
..+||+.+.-.+.|.+||+|.+
T Consensus 37 ~~vng~~vdl~~~l~~~~~ve~ 58 (60)
T cd01668 37 AKVNGKLVPLSTVLKDGDIVEI 58 (60)
T ss_pred EEECCEECCCCCCCCCCCEEEE
Confidence 5589999887788999998864
No 88
>cd01669 TGS_Ygr210_C TGS_Ygr210_C: The C-terminal TGS domain of Ygr210 GTP-binding protein which is a member of Obg-like family of GTPases, and present in archaea. Several Obg-like family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=35.63 E-value=34 Score=24.90 Aligned_cols=20 Identities=20% Similarity=0.330 Sum_probs=17.9
Q ss_pred ECCeeeccceecCCCCEEEe
Q psy7272 214 VNGRQISEPTVLNTGSRVIL 233 (275)
Q Consensus 214 VNG~~I~~~~~L~~GDrI~l 233 (275)
.||+++.....|++||.|.|
T Consensus 55 k~~~~vg~~~~L~dgDvV~I 74 (76)
T cd01669 55 RTGRRVGEDYELKHRDVIKI 74 (76)
T ss_pred eCCEEeCCCcEecCCCEEEE
Confidence 38999999999999999976
No 89
>COG4064 MtrG Tetrahydromethanopterin S-methyltransferase, subunit G [Coenzyme metabolism]
Probab=34.67 E-value=74 Score=22.94 Aligned_cols=33 Identities=15% Similarity=0.139 Sum_probs=25.4
Q ss_pred cCCCceeEEecCCcchHHHHHHHHHHHHHHHHH
Q psy7272 4 NEDGNIQTVAPASVIAEEAVDQLQASEKLIAEL 36 (275)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~L~e~E~L~~el 36 (275)
-||++++.|.+....-.++..+|.|.|+-++--
T Consensus 2 seeek~P~v~v~~~dfne~~kRLdeieekvef~ 34 (75)
T COG4064 2 SEEEKVPKVVVDPDDFNEIHKRLDEIEEKVEFV 34 (75)
T ss_pred CccccCCccccCHHHHHHHHHHHHHHHHHHHhh
Confidence 378999999997777777888888887766543
No 90
>PF03658 Ub-RnfH: RnfH family Ubiquitin; InterPro: IPR005346 This is a small family of proteins of unknown function.; PDB: 2HJ1_B.
Probab=33.72 E-value=28 Score=26.02 Aligned_cols=39 Identities=23% Similarity=0.308 Sum_probs=15.9
Q ss_pred CCCceEECCeeeccceecCCCCEEEeCCceEEEEeCCchhhh
Q psy7272 208 QEALCYVNGRQISEPTVLNTGSRVILGKNHVFRFNHPDQVRV 249 (275)
Q Consensus 208 s~a~t~VNG~~I~~~~~L~~GDrI~lG~~~~f~f~~P~~a~~ 249 (275)
..+++=|=|+.+.....|++||||.|=+-- -.||.++|.
T Consensus 45 ~~~~vGIfGk~~~~d~~L~~GDRVEIYRPL---~~DPk~aRR 83 (84)
T PF03658_consen 45 EKNKVGIFGKLVKLDTVLRDGDRVEIYRPL---TADPKEARR 83 (84)
T ss_dssp TTSEEEEEE-S--TT-B--TT-EEEEE-S-------------
T ss_pred ccceeeeeeeEcCCCCcCCCCCEEEEeccC---ccChhhhcc
Confidence 456666778888888999999999885332 247877753
No 91
>COG0564 RluA Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]
Probab=33.59 E-value=44 Score=30.67 Aligned_cols=27 Identities=22% Similarity=0.314 Sum_probs=23.6
Q ss_pred CCceEECCeeeccceecCCCCEEEeCC
Q psy7272 209 EALCYVNGRQISEPTVLNTGSRVILGK 235 (275)
Q Consensus 209 ~a~t~VNG~~I~~~~~L~~GDrI~lG~ 235 (275)
...+.|||+++.....|..||+|.++-
T Consensus 36 ~g~v~vNg~~v~~~~~l~~gd~i~~~~ 62 (289)
T COG0564 36 KGRVRVNGKKVKPSYKLKPGDVVRIPL 62 (289)
T ss_pred CCCEEECCEEccCCeeeCCCCEEEEec
Confidence 347999999999778899999999984
No 92
>TIGR03069 PS_II_S4 photosystem II S4 domain protein. Members of this protein family are about 265 residues long and each contains an S4 RNA-binding domain of about 48 residues. The member from the Cyanobacterium, Synechocystis sp. PCC 6803, was detected as a novel polypeptide in a highly purified preparation of active photosystem II (Kashino, et al., 2002). The phylogenetic distribution, including Cyanobacteria and Arabidopsis, supports a role in photosystem II, although the high bit score cutoffs for this model reflect similar sequences in non-photosynthetic organisms such as Carboxydothermus hydrogenoformans, a Gram-positive bacterium.
Probab=33.41 E-value=57 Score=29.44 Aligned_cols=36 Identities=14% Similarity=0.185 Sum_probs=28.2
Q ss_pred CCCceEECCeeec-cceecCCCCEEEeCCceEEEEeC
Q psy7272 208 QEALCYVNGRQIS-EPTVLNTGSRVILGKNHVFRFNH 243 (275)
Q Consensus 208 s~a~t~VNG~~I~-~~~~L~~GDrI~lG~~~~f~f~~ 243 (275)
....+.|||..+. ....++.||.|.+-..--|.|..
T Consensus 206 ~~G~V~VNg~~v~~~s~~v~~gD~IsvrG~Gr~~i~~ 242 (257)
T TIGR03069 206 KAGRLRLNWKTVTQPSRELKVGDRLQLRGKGRLEILE 242 (257)
T ss_pred HCCeEEECCEEcCCCCCcCCCCCEEEEcCCceEEEEE
Confidence 3467999999995 45689999999998666677653
No 93
>smart00797 AHS2 Allophanate hydrolase subunit 2. This domain represents subunit 2 of allophanate hydrolase (AHS2).
Probab=32.75 E-value=1e+02 Score=28.27 Aligned_cols=30 Identities=17% Similarity=0.420 Sum_probs=23.2
Q ss_pred CCCceEECCeeec--cceecCCCCEEEeCCce
Q psy7272 208 QEALCYVNGRQIS--EPTVLNTGSRVILGKNH 237 (275)
Q Consensus 208 s~a~t~VNG~~I~--~~~~L~~GDrI~lG~~~ 237 (275)
......+||+++. ....++.||++.||...
T Consensus 53 A~~~~~ln~~~~~~~~~~~v~~Gd~L~~g~~~ 84 (280)
T smart00797 53 ADFPATLDGQPVPPWKPFLVRAGQVLSLGAPK 84 (280)
T ss_pred CCCeeeECCEEcCCCeEEEECCCCEEEeCCCC
Confidence 3456789999984 45779999999999543
No 94
>PF02626 AHS2: Allophanate hydrolase subunit 2; InterPro: IPR003778 Allophanate hydrolase catalyses the second reaction in an ATP-dependent, two-step degradation of urea to ammonia and C02. This follows the action of the biotin-containing urea carboxylase. Saccharomyces cerevisiae can use urea as a sole nitrogen source via this degradation pathway []. In yeast, the fusion of allophanate hydrolase to urea carboxylase is called urea amidolyase. In bacteria, the second step in the urea degradation pathway is also the ATP-dependent allophanate hydrolase. The gene encoding this enzyme is found adjacent to the urea carboxylase gene []. Allophanate hydrolase has strict substrate specificity, as analogues of allophanate are not hydrolysed by it []. This domain represents subunit 2 of allophanate hydrolase (AHS2) which is found in urea carboxylase.; PDB: 3MML_G 3VA7_A 3OEP_A 3OPF_C 3ORE_B.
Probab=32.22 E-value=75 Score=28.93 Aligned_cols=29 Identities=17% Similarity=0.440 Sum_probs=21.5
Q ss_pred CCCceEECCeeec--cceecCCCCEEEeCCc
Q psy7272 208 QEALCYVNGRQIS--EPTVLNTGSRVILGKN 236 (275)
Q Consensus 208 s~a~t~VNG~~I~--~~~~L~~GDrI~lG~~ 236 (275)
.....++||+++. +...++.||+|.||..
T Consensus 53 a~~~~~lng~~~~~~~~~~v~~Gd~L~~~~~ 83 (271)
T PF02626_consen 53 ADFEATLNGKPVPMWQPFLVKAGDVLKFGPP 83 (271)
T ss_dssp SCEEEEETTEEE-TTSEEEE-TT-EEEEEEE
T ss_pred CCCceEECCEEccCCEEEEECCCCEEEecCC
Confidence 4557889999995 6778999999999953
No 95
>COG4110 Uncharacterized protein involved in stress response [General function prediction only]
Probab=31.98 E-value=1.8e+02 Score=24.70 Aligned_cols=69 Identities=22% Similarity=0.238 Sum_probs=39.5
Q ss_pred HHHHHhhhcccCCcCCCCCCCCcceeEEEeeccccccCCCCCCCCCCcceeeecCCcccccceEEE------------Ee
Q psy7272 131 KVISALAEITPHLVNLNEDPFMSECLIYYIKDGRTKVGSAESNLPQESQDIQLSGSHIKTEHCTFE------------NV 198 (275)
Q Consensus 131 ~vi~al~~~~~~l~~l~~~P~r~s~Lt~~L~~~~t~IGr~~~~~~~~~~dI~L~~~~Is~~Hc~I~------------~~ 198 (275)
-||+||.+. ...|+..+.+.+=-|..+ |..... -.+++.++......-.+. ..
T Consensus 66 GviQALGN~--------FGSy~~~Pyi~LdgDDRt--G~~~dG-----E~l~Ing~~~khik~vLi~aFIYEG~~~w~~~ 130 (200)
T COG4110 66 GVIQALGNA--------FGSYRDEPYVQLDGDDRT--GDVSDG-----EWLHINGREWKHIKEVLIYAFIYEGVPSWDKT 130 (200)
T ss_pred HHHHHHhhh--------hcccccCceEEecCCcCC--CcccCC-----ceEEEcchhhhhhhheeeEEEEecCCcCcccc
Confidence 478888873 236666666666555555 665443 456667766443322222 23
Q ss_pred CCEEEEEeCCCCceEE
Q psy7272 199 EGVVTLIPFQEALCYV 214 (275)
Q Consensus 199 e~~vtL~~~s~a~t~V 214 (275)
+|++||..-..+...+
T Consensus 131 dGvvTik~P~~~~I~~ 146 (200)
T COG4110 131 DGVVTIKVPDQPPIET 146 (200)
T ss_pred CCEEEEecCCCCceEE
Confidence 6788887665554433
No 96
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=31.93 E-value=54 Score=24.38 Aligned_cols=23 Identities=26% Similarity=0.520 Sum_probs=18.7
Q ss_pred ceEECCeeec----cceecCCCCEEEe
Q psy7272 211 LCYVNGRQIS----EPTVLNTGSRVIL 233 (275)
Q Consensus 211 ~t~VNG~~I~----~~~~L~~GDrI~l 233 (275)
-+-+||.-|. +.+.|++||+|.+
T Consensus 51 AVevNg~iVpr~~w~~t~L~egD~IEI 77 (84)
T PRK06083 51 VFAINNQVVPRSEWQSTVLSSGDAISL 77 (84)
T ss_pred EEEECCEEeCHHHcCcccCCCCCEEEE
Confidence 4679999886 4678999999865
No 97
>COG1516 FliS Flagellin-specific chaperone FliS [Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones]
Probab=30.44 E-value=69 Score=26.07 Aligned_cols=24 Identities=29% Similarity=0.624 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHH
Q psy7272 23 VDQLQASEKLIAELNETWEEKLKR 46 (275)
Q Consensus 23 ~~~L~e~E~L~~el~~t~EE~L~~ 46 (275)
.+.|.|++.++.++...|+|..+.
T Consensus 100 ~~~i~eV~~ll~~l~eaW~ei~k~ 123 (132)
T COG1516 100 ASKIDEVIGLLRELREAWKEIMKK 123 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 478999999999999999998873
No 98
>PRK05327 rpsD 30S ribosomal protein S4; Validated
Probab=30.09 E-value=52 Score=28.57 Aligned_cols=28 Identities=14% Similarity=0.296 Sum_probs=22.5
Q ss_pred CCceEECCeeecc-ceecCCCCEEEeCCc
Q psy7272 209 EALCYVNGRQISE-PTVLNTGSRVILGKN 236 (275)
Q Consensus 209 ~a~t~VNG~~I~~-~~~L~~GDrI~lG~~ 236 (275)
...++|||+.+.. ...|..||.|.+-..
T Consensus 117 ~G~V~VNgk~v~~ps~~v~~GD~I~v~~~ 145 (203)
T PRK05327 117 HGHILVNGKKVNIPSYRVKPGDVIEVREK 145 (203)
T ss_pred CCcEEECCEEECCCCcCCCCCCEEEECCc
Confidence 4579999999974 567999999988743
No 99
>TIGR01017 rpsD_bact ribosomal protein S4, bacterial/organelle type. This model finds organelle (chloroplast and mitochondrial) ribosomal protein S4 as well as bacterial ribosomal protein S4.
Probab=28.23 E-value=59 Score=28.16 Aligned_cols=29 Identities=14% Similarity=0.299 Sum_probs=23.0
Q ss_pred CCCceEECCeeecc-ceecCCCCEEEeCCc
Q psy7272 208 QEALCYVNGRQISE-PTVLNTGSRVILGKN 236 (275)
Q Consensus 208 s~a~t~VNG~~I~~-~~~L~~GDrI~lG~~ 236 (275)
....+.|||+.++. ...+..||.|.+-..
T Consensus 113 ~~G~V~VNgk~v~~ps~~V~~GD~I~V~~~ 142 (200)
T TIGR01017 113 SHGHILVNGKKVDIPSYQVRPGDIISIKEK 142 (200)
T ss_pred HCCCEEECCEEeCCCCCCCCCCCEEEEeeC
Confidence 45679999999965 457999999988643
No 100
>TIGR00005 rluA_subfam pseudouridine synthase, RluA family. modifies uracil-65 in transfer RNAs to pseudouridine.
Probab=27.37 E-value=91 Score=28.27 Aligned_cols=25 Identities=20% Similarity=0.369 Sum_probs=18.4
Q ss_pred CCceEECCeee-ccceecCCCCEEEe
Q psy7272 209 EALCYVNGRQI-SEPTVLNTGSRVIL 233 (275)
Q Consensus 209 ~a~t~VNG~~I-~~~~~L~~GDrI~l 233 (275)
...++|||+.+ .....|+.||.|.+
T Consensus 30 ~G~V~VNg~~~~~~~~~v~~gd~I~i 55 (299)
T TIGR00005 30 NGQVKVNGKVTANPKLKVKDGDRITV 55 (299)
T ss_pred CCcEEECCEeccCcccCCCCCCEEEE
Confidence 45788899544 45667888998887
No 101
>TIGR01149 mtrG N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit G. coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=27.35 E-value=1.5e+02 Score=21.40 Aligned_cols=32 Identities=19% Similarity=0.157 Sum_probs=23.5
Q ss_pred CCceeEEecCCcchHHHHHHHHHHHHHHHHHH
Q psy7272 6 DGNIQTVAPASVIAEEAVDQLQASEKLIAELN 37 (275)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~L~e~E~L~~el~ 37 (275)
|+++++|-++...-.++.++|.+.|.-++--|
T Consensus 1 ~e~iP~v~v~~~d~~~i~~rLd~iEeKVEf~~ 32 (70)
T TIGR01149 1 DEKAPAVFVEPDEFNEVMKRLDEIEEKVEFVN 32 (70)
T ss_pred CCCCCeeecCHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788888866667778788888777665544
No 102
>TIGR00724 urea_amlyse_rel biotin-dependent carboxylase uncharacterized domain. Urea amidolyase of Saccharomyces cerevisiae is a 1835 amino acid protein with an amidase domain, a biotin/lipoyl cofactor attachment domain, a carbamoyl-phosphate synthase L chain-like domain, and uncharacterized regions. It has both urea carboxylase and allophanate hydrolase activities. This alignment models a domain that represents uncharacterized prokaryotic proteins of about 300 amino acids, regions of prokaryotic urea carboxylase and of the urea carboxylase region of yeast urea amidolyase, and regions of other biotin-containing proteins.
Probab=26.95 E-value=1.3e+02 Score=28.06 Aligned_cols=29 Identities=21% Similarity=0.322 Sum_probs=22.7
Q ss_pred CCceEECCeeec---cceecCCCCEEEeCCce
Q psy7272 209 EALCYVNGRQIS---EPTVLNTGSRVILGKNH 237 (275)
Q Consensus 209 ~a~t~VNG~~I~---~~~~L~~GDrI~lG~~~ 237 (275)
.....+||+++. .+..++.||++.||...
T Consensus 76 ~~~~~lng~~~~~~~~~~~v~~Gd~L~~g~~~ 107 (314)
T TIGR00724 76 DTDLCLNDGQVIPQWRPYEVKRGQILSLGRLK 107 (314)
T ss_pred CCcceeCCcccCCCceEEEECCCCEEEeCCCC
Confidence 357899999983 34779999999999544
No 103
>TIGR00208 fliS flagellar biosynthetic protein FliS. The function of this protein in flagellar biosynthesis is unknown, but appears to be regulatory. The member of this family in Vibrio parahaemolyticus is designated FlaJ (creating a synonym for FliS) and was shown essential for flagellin biosynthesis.
Probab=26.92 E-value=88 Score=24.86 Aligned_cols=23 Identities=17% Similarity=0.595 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHH
Q psy7272 23 VDQLQASEKLIAELNETWEEKLK 45 (275)
Q Consensus 23 ~~~L~e~E~L~~el~~t~EE~L~ 45 (275)
.+.+.+..+++.++..+|+|.++
T Consensus 100 ~~~l~ev~~~l~~Lr~aW~e~~~ 122 (124)
T TIGR00208 100 TSKLAEVEGYVRDFRDAWKEAIQ 122 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 46799999999999999999875
No 104
>PF08649 DASH_Dad1: DASH complex subunit Dad1; InterPro: IPR013958 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules []. Throughout the cell cycle Dad1 remains bound to kinetochores and its association is dependent on the Mis6 and Mal2 [].
Probab=26.56 E-value=1.6e+02 Score=20.51 Aligned_cols=24 Identities=25% Similarity=0.491 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHH
Q psy7272 27 QASEKLIAELNETWEEKLKRTEEI 50 (275)
Q Consensus 27 ~e~E~L~~el~~t~EE~L~~~e~~ 50 (275)
++.+.|++|+.++.++.+..+...
T Consensus 5 ~qR~~Li~eI~~~~e~vl~nlN~L 28 (58)
T PF08649_consen 5 RQRDRLIQEISESMESVLNNLNAL 28 (58)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888888888888888877766
No 105
>CHL00113 rps4 ribosomal protein S4; Reviewed
Probab=26.11 E-value=68 Score=27.90 Aligned_cols=27 Identities=15% Similarity=0.153 Sum_probs=21.9
Q ss_pred CCCceEECCeeecc-ceecCCCCEEEeC
Q psy7272 208 QEALCYVNGRQISE-PTVLNTGSRVILG 234 (275)
Q Consensus 208 s~a~t~VNG~~I~~-~~~L~~GDrI~lG 234 (275)
....++|||+.++. ...+..||.|.+-
T Consensus 112 ~~G~V~VNGk~v~~ps~~Vk~GD~I~V~ 139 (201)
T CHL00113 112 NHGHILVNGRIVDIPSYRCKPKDIITVK 139 (201)
T ss_pred HCCcEEECCEEecCccccCCCCCEEEEc
Confidence 34679999999965 5679999999886
No 106
>COG3524 KpsE Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=25.09 E-value=3.1e+02 Score=25.75 Aligned_cols=29 Identities=34% Similarity=0.437 Sum_probs=23.5
Q ss_pred EEecCCcchHHHHHH--HHHHHHHHHHHHHh
Q psy7272 11 TVAPASVIAEEAVDQ--LQASEKLIAELNET 39 (275)
Q Consensus 11 ~~~~~~~~~~~~~~~--L~e~E~L~~el~~t 39 (275)
+|..|.|+....+.+ |+++|+|+.+++..
T Consensus 145 ~V~aF~p~eaq~Iaqailkqse~lIN~Ls~r 175 (372)
T COG3524 145 NVTAFDPKEAQKIAQAILKQSEKLINQLSER 175 (372)
T ss_pred EEeecChhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788887776665 99999999999865
No 107
>PRK10348 ribosome-associated heat shock protein Hsp15; Provisional
Probab=24.73 E-value=81 Score=25.67 Aligned_cols=28 Identities=11% Similarity=0.230 Sum_probs=21.6
Q ss_pred CCCceEECCeeeccceecCCCCEEEeCC
Q psy7272 208 QEALCYVNGRQISEPTVLNTGSRVILGK 235 (275)
Q Consensus 208 s~a~t~VNG~~I~~~~~L~~GDrI~lG~ 235 (275)
....+.|||.+......++.||.|.+-.
T Consensus 32 ~~G~V~vnG~~~Kps~~V~~gd~l~v~~ 59 (133)
T PRK10348 32 EGGKVHYNGQRSKPSKIVELNATLTLRQ 59 (133)
T ss_pred HCCCEEECCEECCCCCccCCCCEEEEEE
Confidence 3467899999955556789999988754
No 108
>cd01616 TGS The TGS domain, named after the ThrRS, GTPase, and SpoT/RelA proteins where it occurs, is structurally similar to ubiquitin. TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=24.05 E-value=87 Score=19.80 Aligned_cols=22 Identities=27% Similarity=0.448 Sum_probs=17.2
Q ss_pred eEECCeeeccceecCCCCEEEe
Q psy7272 212 CYVNGRQISEPTVLNTGSRVIL 233 (275)
Q Consensus 212 t~VNG~~I~~~~~L~~GDrI~l 233 (275)
..+||+.+.-...|.+||.|.+
T Consensus 37 ~~vn~~~~~l~~~l~~~~~i~~ 58 (60)
T cd01616 37 ALVNGQLVDLSYTLQDGDTVSI 58 (60)
T ss_pred EEECCEECCCCcCcCCCCEEEE
Confidence 4588888876778999998765
No 109
>COG0718 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.81 E-value=2.2e+02 Score=22.21 Aligned_cols=54 Identities=19% Similarity=0.280 Sum_probs=37.0
Q ss_pred cccCCCceeEEecCCcchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Q psy7272 2 VKNEDGNIQTVAPASVIAEEAVDQLQASEKLIAELNETWEEKLKRTEEIRIQREAVFAE 60 (275)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~L~e~E~L~~el~~t~EE~L~~~e~~~~~r~~~~t~ 60 (275)
+-+.++++..|.. .+++++ -.+.|-|=.-+..+.-++++++++.+.++...++.
T Consensus 45 ~~~G~~ev~~v~I----dp~l~d-peD~E~LeDLi~aA~ndA~~kv~e~~~e~m~~~t~ 98 (105)
T COG0718 45 TINGKGEVKSVEI----DPSLLD-PEDKEMLEDLILAAFNDAKKKVEETRKEKMGALTG 98 (105)
T ss_pred EEeCCCcEEEEEe----CHHHcC-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4567788888777 556655 33455555556667788899999998887766654
No 110
>PF04210 MtrG: Tetrahydromethanopterin S-methyltransferase, subunit G ; InterPro: IPR005866 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=23.35 E-value=1.9e+02 Score=20.89 Aligned_cols=32 Identities=22% Similarity=0.160 Sum_probs=21.7
Q ss_pred CCceeEEecCCcchHHHHHHHHHHHHHHHHHH
Q psy7272 6 DGNIQTVAPASVIAEEAVDQLQASEKLIAELN 37 (275)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~L~e~E~L~~el~ 37 (275)
|+++++|-+....-.++.++|.+.|+-++--+
T Consensus 1 d~~iP~viv~~~~~~~i~~rLd~iEeKvEf~~ 32 (70)
T PF04210_consen 1 DEKIPQVIVDPDDFNEIMKRLDEIEEKVEFTN 32 (70)
T ss_pred CCCCCeeeeCHHHHHHHHHHHHHHHHHHHhHH
Confidence 67788888766666667677777666655443
No 111
>PRK11025 23S rRNA pseudouridylate synthase C; Provisional
Probab=22.42 E-value=81 Score=29.13 Aligned_cols=25 Identities=24% Similarity=0.317 Sum_probs=20.0
Q ss_pred CCceEECCeeeccceecCCCCEEEe
Q psy7272 209 EALCYVNGRQISEPTVLNTGSRVIL 233 (275)
Q Consensus 209 ~a~t~VNG~~I~~~~~L~~GDrI~l 233 (275)
...++|||..+.....|+.||.|.+
T Consensus 44 ~G~V~VNg~~v~~~~~v~~GD~I~i 68 (317)
T PRK11025 44 KGEVRVNKKRIKPEYKLEAGDEVRI 68 (317)
T ss_pred cCCEEECCEEcCcccccCCCCEEEe
Confidence 4468899998876777888998887
No 112
>PF01093 Clusterin: Clusterin; InterPro: IPR000753 Clusterin is a vertebrate glycoprotein [], the exact function of which is not yet clear. Clusterin expression is complex, appearing as different forms in different cell compartments. One set of proteins is directed for secretion, and other clusterin species are expressed in the cytoplasm and nucleus. The secretory form of the clusterin protein (sCLU) is targeted to the ER by an initial leader peptide. This ~60kDa pre-sCLU protein is further glycosylated and proteolytically cleaved into alpha- and beta-subunits, held together by disulphide bonds. External sCLU is an 80kDa protein and may act as a molecular chaperone, scavenging denatured proteins outside cells following specific stress-induced injury such as heat shock. sCLU possesses nonspecific binding activity to hydrophobic domains of various proteins in vitro []. A specific nuclear form of CLU (nCLU) acts as a pro-death signal, inhibiting cell growth and survival. The nCLU protein has two coiled-coil domains, one at its N terminus that is unable to bind Ku70, and a C-terminal coiled-coil domain that is uniquely able to associate with Ku70 and is minimally required for cell death. Clusterin is synthesized as a precursor polypeptide of about 400 amino acids which is post-translationally cleaved to form two subunits of about 200 amino acids each. The two subunits are linked by five disulphide bonds to form an antiparallel ladder-like structure []. In each of the mature subunits the five cysteines that are involved in disulphide bonds are clustered in domains of about 30 amino acids located in the central part of the subunits. This entry represents the clusterin precursor and related proteins.; GO: 0008219 cell death
Probab=21.72 E-value=2.1e+02 Score=27.98 Aligned_cols=68 Identities=13% Similarity=0.236 Sum_probs=49.0
Q ss_pred ccCCCceeEEecCCcchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcc--------ccccCCceeeE
Q psy7272 3 KNEDGNIQTVAPASVIAEEAVDQLQASEKLIAELNETWEEKLKRTEEIRIQREAVFAEMGV--------AVKEDGNTVGV 74 (275)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~L~e~E~L~~el~~t~EE~L~~~e~~~~~r~~~~t~~~~--------~~~~ssrsh~i 74 (275)
.||+|+=+-| .++..+|.|.-+|.+..+.-|++.|+.++.-.-+-...+..||- +|. +.....|
T Consensus 298 ~DCs~~~P~v-------~eL~~Eleeal~Lae~s~qQY~~lLq~~Q~hm~dTs~lL~~m~~QFgWVS~LAN~-T~~~~~i 369 (436)
T PF01093_consen 298 VDCSGKNPSV-------PELHEELEEALRLAEKSTQQYDQLLQMVQHHMEDTSSLLEQMNEQFGWVSQLANQ-TQGPENI 369 (436)
T ss_pred HhcCCCCCCc-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhc-CCCCCCe
Confidence 4677765555 56889999999999999999999999888877666666666642 111 2335667
Q ss_pred Eeee
Q psy7272 75 FSPQ 78 (275)
Q Consensus 75 f~i~ 78 (275)
|.+.
T Consensus 370 F~v~ 373 (436)
T PF01093_consen 370 FNVT 373 (436)
T ss_pred EEEE
Confidence 7764
No 113
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=21.40 E-value=1.5e+02 Score=20.37 Aligned_cols=40 Identities=25% Similarity=0.388 Sum_probs=22.5
Q ss_pred EEEEeC-CCCceEECCeeeccceecCCCCEEEeCCceEEEEeCC
Q psy7272 202 VTLIPF-QEALCYVNGRQISEPTVLNTGSRVILGKNHVFRFNHP 244 (275)
Q Consensus 202 vtL~~~-s~a~t~VNG~~I~~~~~L~~GDrI~lG~~~~f~f~~P 244 (275)
+.+.-. ++|.+||||..+.. +.+.-- .+.-| .|.+++..|
T Consensus 4 l~V~s~p~gA~V~vdg~~~G~-tp~~~~-~l~~G-~~~v~v~~~ 44 (71)
T PF08308_consen 4 LRVTSNPSGAEVYVDGKYIGT-TPLTLK-DLPPG-EHTVTVEKP 44 (71)
T ss_pred EEEEEECCCCEEEECCEEecc-Ccceee-ecCCc-cEEEEEEEC
Confidence 344433 68899999988862 322111 13345 566666554
No 114
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=21.29 E-value=76 Score=22.01 Aligned_cols=23 Identities=22% Similarity=0.274 Sum_probs=16.1
Q ss_pred ceEECCeeecc---ceecCCCCEEEe
Q psy7272 211 LCYVNGRQISE---PTVLNTGSRVIL 233 (275)
Q Consensus 211 ~t~VNG~~I~~---~~~L~~GDrI~l 233 (275)
.+.+||.-|.. .+.|++||+|.+
T Consensus 33 av~~N~~iv~r~~~~~~L~~gD~ieI 58 (65)
T PRK05863 33 AVAVDWSVLPRSDWATKLRDGARLEV 58 (65)
T ss_pred EEEECCcCcChhHhhhhcCCCCEEEE
Confidence 56778876642 235999999875
No 115
>PRK01026 tetrahydromethanopterin S-methyltransferase subunit G; Provisional
Probab=21.19 E-value=2.2e+02 Score=20.98 Aligned_cols=34 Identities=24% Similarity=0.177 Sum_probs=24.7
Q ss_pred cCCCceeEEecCCcchHHHHHHHHHHHHHHHHHH
Q psy7272 4 NEDGNIQTVAPASVIAEEAVDQLQASEKLIAELN 37 (275)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~L~e~E~L~~el~ 37 (275)
++++++++|-+..-.=.++.++|.+.|.-++--|
T Consensus 2 ~~~~~iP~viv~~~d~~~i~~rLD~iEeKVEftn 35 (77)
T PRK01026 2 AEDEKIPQVVVDPKDFKEIQKRLDEIEEKVEFTN 35 (77)
T ss_pred CcccCCCeeecCHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788999998865556677777777776665444
No 116
>PF11012 DUF2850: Protein of unknown function (DUF2850); InterPro: IPR021271 This family of proteins with unknown function appear to be restricted to Vibrionaceae.
Probab=20.99 E-value=2.8e+02 Score=20.50 Aligned_cols=39 Identities=15% Similarity=0.307 Sum_probs=23.7
Q ss_pred CCCceEECCeeeccceecCCCCEEE--eCC-ceEEEEeCCchh
Q psy7272 208 QEALCYVNGRQISEPTVLNTGSRVI--LGK-NHVFRFNHPDQV 247 (275)
Q Consensus 208 s~a~t~VNG~~I~~~~~L~~GDrI~--lG~-~~~f~f~~P~~a 247 (275)
+..++++||+.|...... +|+.+. .|. ...|.+.+-...
T Consensus 22 ~~~GV~~ngrlV~T~F~f-DG~~l~~~~G~~~~~y~~~~~~~s 63 (79)
T PF11012_consen 22 NESGVFRNGRLVATSFEF-DGKTLEYRTGSGTYRYQISGENNS 63 (79)
T ss_pred CCCcEEECCCEEeeEEEE-CCCEEEEEECCeEEEEEEcCCCch
Confidence 346899999999765543 666554 342 334555555444
No 117
>PF02561 FliS: Flagellar protein FliS; InterPro: IPR003713 The fliD operon of several bacteria consists of three flagellar genes, fliD, fliS, and fliT, and is transcribed in this order []. In Bacillus subtilis the operon encoding the flagellar proteins FliD, FliS, and FliT is sigma D-dependent [].; GO: 0009296 flagellum assembly, 0009288 bacterial-type flagellum; PDB: 1VH6_A 3IQC_B 3K1I_B 1ORJ_B 1ORY_A.
Probab=20.95 E-value=1.3e+02 Score=23.51 Aligned_cols=23 Identities=30% Similarity=0.644 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHH
Q psy7272 23 VDQLQASEKLIAELNETWEEKLK 45 (275)
Q Consensus 23 ~~~L~e~E~L~~el~~t~EE~L~ 45 (275)
.+.+.+...++.++..+|+|..+
T Consensus 98 ~~~l~~v~~~l~~l~~aW~e~~k 120 (122)
T PF02561_consen 98 PERLDEVIRILEELRDAWEEIAK 120 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 47799999999999999999876
No 118
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=20.40 E-value=1.9e+02 Score=24.56 Aligned_cols=36 Identities=28% Similarity=0.372 Sum_probs=30.2
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy7272 16 SVIAEEAVDQLQASEKLIAELNETWEEKLKRTEEIR 51 (275)
Q Consensus 16 ~~~~~~~~~~L~e~E~L~~el~~t~EE~L~~~e~~~ 51 (275)
...++++...+++++.++.++++++++-+...-+-.
T Consensus 152 ~~~~~~~~~~l~e~~~~L~~l~~~f~~~~~~l~~~d 187 (199)
T PF10112_consen 152 PVKSEEIKQSLEEIEETLDTLNQAFEKDLDKLLEDD 187 (199)
T ss_pred cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 345788899999999999999999999888766543
No 119
>PLN00051 RNA-binding S4 domain-containing protein; Provisional
Probab=20.31 E-value=1.2e+02 Score=27.59 Aligned_cols=35 Identities=23% Similarity=0.265 Sum_probs=26.9
Q ss_pred CCceEECCeeeccc-eecCCCCEEEeCCceEEEEeC
Q psy7272 209 EALCYVNGRQISEP-TVLNTGSRVILGKNHVFRFNH 243 (275)
Q Consensus 209 ~a~t~VNG~~I~~~-~~L~~GDrI~lG~~~~f~f~~ 243 (275)
...+.|||..+..+ ..++.||+|.+-..=-|+|..
T Consensus 215 ~g~V~vN~~~v~~~s~~v~~gD~isiRG~GR~~i~~ 250 (267)
T PLN00051 215 SGDVRVNWREVTKNGTTLKTGDVVSVSGKGRLEVGE 250 (267)
T ss_pred cCcEEECCEEcCCCCCCCCCCCEEEEeeCCEEEEEE
Confidence 35789999999654 579999999987555566653
No 120
>PRK10626 hypothetical protein; Provisional
Probab=20.26 E-value=1.2e+02 Score=27.20 Aligned_cols=31 Identities=23% Similarity=0.411 Sum_probs=19.9
Q ss_pred ccccceEEEEeCCEEEEEeCCCCceEECCeeec
Q psy7272 188 IKTEHCTFENVEGVVTLIPFQEALCYVNGRQIS 220 (275)
Q Consensus 188 Is~~Hc~I~~~e~~vtL~~~s~a~t~VNG~~I~ 220 (275)
|.|.+-.|.-..+.+.|.| .+.+||||++|.
T Consensus 34 Itpq~v~V~~~sg~l~I~~--dg~L~inGk~v~ 64 (239)
T PRK10626 34 ISPQTVQVVGASGNLVISP--DGNVMRNGKQLS 64 (239)
T ss_pred EcCCeEEEEecCCceEEcC--CCCEEECCEEec
Confidence 4444455555555555544 567999999984
Done!