RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy7272
(275 letters)
>gnl|CDD|238661 cd01365, KISc_KIF1A_KIF1B, Kinesin motor domain, KIF1_like
proteins. KIF1A (Unc104) transports synaptic vesicles to
the nerve terminal, KIF1B has been implicated in
transport of mitochondria. Both proteins are expressed
in neurons. This catalytic (head) domain has ATPase
activity and belongs to the larger group of P-loop
NTPases. Kinesins are microtubule-dependent molecular
motors that play important roles in intracellular
transport and in cell division. In most kinesins, the
motor domain is found at the N-terminus (N-type). N-type
kinesins are (+) end-directed motors, i.e. they
transport cargo towards the (+) end of the microtubule.
In contrast to the majority of dimeric kinesins, most
KIF1A/Unc104 kinesins are monomeric motors. A
lysine-rich loop in KIF1A binds to the negatively
charged C-terminus of tubulin and compensates for the
lack of a second motor domain, allowing KIF1A to move
processively.
Length = 356
Score = 115 bits (290), Expect = 4e-30
Identities = 52/61 (85%), Positives = 56/61 (91%)
Query: 78 QKAVDDMTDLTTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALA 137
QK +D TDLTTEKVSKISLVDLAGSERA STGA+G RLKEG+NINKSLTTLGKVISALA
Sbjct: 226 QKKLDKETDLTTEKVSKISLVDLAGSERASSTGAEGDRLKEGSNINKSLTTLGKVISALA 285
Query: 138 E 138
+
Sbjct: 286 D 286
>gnl|CDD|214526 smart00129, KISc, Kinesin motor, catalytic domain. ATPase.
Microtubule-dependent molecular motors that play
important roles in intracellular transport of organelles
and in cell division.
Length = 335
Score = 92.3 bits (230), Expect = 9e-22
Identities = 34/50 (68%), Positives = 41/50 (82%)
Query: 89 TEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAE 138
+ K SK++LVDLAGSERA TGA+G RLKE NINKSL+ LG VI+ALA+
Sbjct: 222 SGKASKLNLVDLAGSERAKKTGAEGDRLKEAGNINKSLSALGNVINALAQ 271
>gnl|CDD|238054 cd00106, KISc, Kinesin motor domain. This catalytic (head) domain
has ATPase activity and belongs to the larger group of
P-loop NTPases. Kinesins are microtubule-dependent
molecular motors that play important roles in
intracellular transport and in cell division. In most
kinesins, the motor domain is found at the N-terminus
(N-type), in some its is found in the middle (M-type),
or C-terminal (C-type). N-type and M-type kinesins are
(+) end-directed motors, while C-type kinesins are (-)
end-directed motors, i.e. they transport cargo towards
the (-) end of the microtubule. Kinesin motor domains
hydrolyze ATP at a rate of about 80 per second, and move
along the microtubule at a speed of about 6400 Angstroms
per second. To achieve that, kinesin head groups work in
pairs. Upon replacing ADP with ATP, a kinesin motor
domain increases its affinity for microtubule binding
and locks in place. Also, the neck linker binds to the
motor domain, which repositions the other head domain
through the coiled-coil domain close to a second tubulin
dimer, about 80 Angstroms along the microtubule.
Meanwhile, ATP hydrolysis takes place, and when the
second head domain binds to the microtubule, the first
domain again replaces ADP with ATP, triggering a
conformational change that pulls the first domain
forward.
Length = 328
Score = 88.8 bits (221), Expect = 2e-20
Identities = 35/60 (58%), Positives = 43/60 (71%)
Query: 79 KAVDDMTDLTTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAE 138
+ + D + K SK++LVDLAGSERA TGA+G RLKE NINKSL+ LG VISAL+
Sbjct: 214 EQRNTTNDGRSIKSSKLNLVDLAGSERAKKTGAEGDRLKEAKNINKSLSALGNVISALSS 273
>gnl|CDD|238659 cd01363, Motor_domain, Myosin and Kinesin motor domain. These
ATPases belong to the P-loop NTPase family and provide
the driving force in myosin and kinesin mediated
processes.
Length = 186
Score = 85.3 bits (211), Expect = 3e-20
Identities = 38/55 (69%), Positives = 43/55 (78%)
Query: 88 TTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEITPH 142
KV KI+LVDLAGSER D +GA+G+RL E ANINKSL+TLG VISALAE H
Sbjct: 102 EQPKVGKINLVDLAGSERIDFSGAEGSRLTETANINKSLSTLGNVISALAERDSH 156
>gnl|CDD|215803 pfam00225, Kinesin, Kinesin motor domain.
Length = 326
Score = 88.0 bits (219), Expect = 3e-20
Identities = 35/49 (71%), Positives = 39/49 (79%), Gaps = 1/49 (2%)
Query: 91 KVSKISLVDLAGSERADSTG-AKGTRLKEGANINKSLTTLGKVISALAE 138
K K++LVDLAGSERA TG A G RLKE ANINKSL+ LG VI+ALAE
Sbjct: 222 KTGKLNLVDLAGSERASKTGAAGGRRLKEAANINKSLSALGNVINALAE 270
>gnl|CDD|238662 cd01366, KISc_C_terminal, Kinesin motor domain,
KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a
spindle motor protein necessary for chromosome
segregation in meiosis. KIFC2/KIFC3-like kinesins have
been implicated in motility of the Golgi apparatus as
well as dentritic and axonal transport in neurons. This
catalytic (head) domain has ATPase activity and belongs
to the larger group of P-loop NTPases. Kinesins are
microtubule-dependent molecular motors that play
important roles in intracellular transport and in cell
division. In this subgroup the motor domain is found at
the C-terminus (C-type). C-type kinesins are (-)
end-directed motors, i.e. they transport cargo towards
the (-) end of the microtubule. Kinesin motor domains
hydrolyze ATP at a rate of about 80 per second, and move
along the microtubule at a speed of about 6400 Angstroms
per second. To achieve that, kinesin head groups work in
pairs. Upon replacing ADP with ATP, a kinesin motor
domain increases its affinity for microtubule binding
and locks in place. Also, the neck linker binds to the
motor domain, which repositions the other head domain
through the coiled-coil domain close to a second tubulin
dimer, about 80 Angstroms along the microtubule.
Meanwhile, ATP hydrolysis takes place, and when the
second head domain binds to the microtubule, the first
domain again replaces ADP with ATP, triggering a
conformational change that pulls the first domain
forward.
Length = 329
Score = 85.3 bits (212), Expect = 3e-19
Identities = 32/63 (50%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Query: 80 AVDDMTDLTTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEI 139
+ T T K++LVDLAGSER +GA G RLKE INKSL+ LG VISAL
Sbjct: 215 GTNLQTGEQT--RGKLNLVDLAGSERLKKSGATGDRLKEAQAINKSLSALGDVISALRSK 272
Query: 140 TPH 142
H
Sbjct: 273 DSH 275
>gnl|CDD|238666 cd01370, KISc_KIP3_like, Kinesin motor domain, KIP3-like subgroup.
The yeast kinesin KIP3 plays a role in positioning the
mitotic spindle. This catalytic (head) domain has ATPase
activity and belongs to the larger group of P-loop
NTPases. Kinesins are microtubule-dependent molecular
motors that play important roles in intracellular
transport and in cell division. In most kinesins, the
motor domain is found at the N-terminus (N-type). N-type
kinesins are (+) end-directed motors, i.e. they
transport cargo towards the (+) end of the microtubule.
Kinesin motor domains hydrolyze ATP at a rate of about
80 per second, and move along the microtubule at a speed
of about 6400 Angstroms per second. To achieve that,
kinesin head groups work in pairs. Upon replacing ADP
with ATP, a kinesin motor domain increases its affinity
for microtubule binding and locks in place. Also, the
neck linker binds to the motor domain, which repositions
the other head domain through the coiled-coil domain
close to a second tubulin dimer, about 80 Angstroms
along the microtubule. Meanwhile, ATP hydrolysis takes
place, and when the second head domain binds to the
microtubule, the first domain again replaces ADP with
ATP, triggering a conformational change that pulls the
first domain forward.
Length = 338
Score = 78.9 bits (195), Expect = 7e-17
Identities = 29/50 (58%), Positives = 38/50 (76%)
Query: 89 TEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAE 138
++ K+SL+DLAGSERA +T +G RLKEGANIN+SL LG I+AL +
Sbjct: 231 QVRIGKLSLIDLAGSERASATNNRGQRLKEGANINRSLLALGNCINALVD 280
>gnl|CDD|238670 cd01374, KISc_CENP_E, Kinesin motor domain, CENP-E/KIP2-like
subgroup, involved in chromosome movement and/or spindle
elongation during mitosis. This catalytic (head) domain
has ATPase activity and belongs to the larger group of
P-loop NTPases. Kinesins are microtubule-dependent
molecular motors that play important roles in
intracellular transport and in cell division. In most
kinesins, the motor domain is found at the N-terminus
(N-type). N-type kinesins are (+) end-directed motors,
i.e. they transport cargo towards the (+) end of the
microtubule. Kinesin motor domains hydrolyze ATP at a
rate of about 80 per second, and move along the
microtubule at a speed of about 6400 Angstroms per
second. To achieve that, kinesin head groups work in
pairs. Upon replacing ADP with ATP, a kinesin motor
domain increases its affinity for microtubule binding
and locks in place. Also, the neck linker binds to the
motor domain, which repositions the other head domain
through the coiled-coil domain close to a second tubulin
dimer, about 80 Angstroms along the microtubule.
Meanwhile, ATP hydrolysis takes place, and when the
second head domain binds to the microtubule, the first
domain again replaces ADP with ATP, triggering a
conformational change that pulls the first domain
forward.
Length = 321
Score = 77.0 bits (190), Expect = 2e-16
Identities = 33/50 (66%), Positives = 39/50 (78%), Gaps = 1/50 (2%)
Query: 89 TEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAE 138
T +VS ++L+DLAGSERA TGA G R KEG+ INKSL TLG VIS L+E
Sbjct: 216 TVRVSTLNLIDLAGSERASQTGA-GERRKEGSFINKSLLTLGTVISKLSE 264
>gnl|CDD|238665 cd01369, KISc_KHC_KIF5, Kinesin motor domain, kinesin heavy chain
(KHC) or KIF5-like subgroup. Members of this group have
been associated with organelle transport. This catalytic
(head) domain has ATPase activity and belongs to the
larger group of P-loop NTPases. Kinesins are
microtubule-dependent molecular motors that play
important roles in intracellular transport and in cell
division. In most kinesins, the motor domain is found at
the N-terminus (N-type). N-type kinesins are (+)
end-directed motors, i.e. they transport cargo towards
the (+) end of the microtubule. Kinesin motor domains
hydrolyze ATP at a rate of about 80 per second, and move
along the microtubule at a speed of about 6400 Angstroms
per second. To achieve that, kinesin head groups work in
pairs. Upon replacing ADP with ATP, a kinesin motor
domain increases its affinity for microtubule binding
and locks in place. Also, the neck linker binds to the
motor domain, which repositions the other head domain
through the coiled-coil domain close to a second tubulin
dimer, about 80 Angstroms along the microtubule.
Meanwhile, ATP hydrolysis takes place, and when the
second head domain binds to the microtubule, the first
domain again replaces ADP with ATP, triggering a
conformational change that pulls the first domain
forward.
Length = 325
Score = 76.6 bits (189), Expect = 4e-16
Identities = 27/48 (56%), Positives = 34/48 (70%)
Query: 91 KVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAE 138
K K+ LVDLAGSE+ TGA+G L+E INKSL+ LG VI+AL +
Sbjct: 222 KRGKLFLVDLAGSEKVSKTGAEGQTLEEAKKINKSLSALGNVINALTD 269
>gnl|CDD|238667 cd01371, KISc_KIF3, Kinesin motor domain, kinesins II or KIF3_like
proteins. Subgroup of kinesins, which form heterotrimers
composed of 2 kinesins and one non-motor accessory
subunit. Kinesins II play important roles in ciliary
transport, and have been implicated in neuronal
transport, melanosome transport, the secretory pathway,
and mitosis. This catalytic (head) domain has ATPase
activity and belongs to the larger group of P-loop
NTPases. Kinesins are microtubule-dependent molecular
motors that play important roles in intracellular
transport and in cell division. In this group the motor
domain is found at the N-terminus (N-type). N-type
kinesins are (+) end-directed motors, i.e. they
transport cargo towards the (+) end of the microtubule.
Kinesin motor domains hydrolyze ATP at a rate of about
80 per second, and move along the microtubule at a speed
of about 6400 Angstroms per second. To achieve that,
kinesin head groups work in pairs. Upon replacing ADP
with ATP, a kinesin motor domain increases its affinity
for microtubule binding and locks in place. Also, the
neck linker binds to the motor domain, which repositions
the other head domain through the coiled-coil domain
close to a second tubulin dimer, about 80 Angstroms
along the microtubule. Meanwhile, ATP hydrolysis takes
place, and when the second head domain binds to the
microtubule, the first domain again replaces ADP with
ATP, triggering a conformational change that pulls the
first domain forward.
Length = 333
Score = 76.3 bits (188), Expect = 5e-16
Identities = 30/48 (62%), Positives = 35/48 (72%)
Query: 91 KVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAE 138
+V K++LVDLAGSER TGA G RLKE IN SL+ LG VISAL +
Sbjct: 230 RVGKLNLVDLAGSERQSKTGATGDRLKEATKINLSLSALGNVISALVD 277
>gnl|CDD|238669 cd01373, KISc_KLP2_like, Kinesin motor domain, KLP2-like subgroup.
Members of this subgroup seem to play a role in mitosis
and meiosis. This catalytic (head) domain has ATPase
activity and belongs to the larger group of P-loop
NTPases. Kinesins are microtubule-dependent molecular
motors that play important roles in intracellular
transport and in cell division. In most kinesins, the
motor domain is found at the N-terminus (N-type). N-type
kinesins are (+) end-directed motors, i.e. they
transport cargo towards the (+) end of the microtubule.
Kinesin motor domains hydrolyze ATP at a rate of about
80 per second, and move along the microtubule at a speed
of about 6400 Angstroms per second. To achieve that,
kinesin head groups work in pairs. Upon replacing ADP
with ATP, a kinesin motor domain increases its affinity
for microtubule binding and locks in place. Also, the
neck linker binds to the motor domain, which repositions
the other head domain through the coiled-coil domain
close to a second tubulin dimer, about 80 Angstroms
along the microtubule. Meanwhile, ATP hydrolysis takes
place, and when the second head domain binds to the
microtubule, the first domain again replaces ADP with
ATP, triggering a conformational change that pulls the
first domain forward.
Length = 337
Score = 74.4 bits (183), Expect = 3e-15
Identities = 31/54 (57%), Positives = 39/54 (72%)
Query: 86 DLTTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEI 139
T + S+++LVDLAGSER GA+G RLKE NINKSL+TLG VI AL ++
Sbjct: 226 SSTNIRTSRLNLVDLAGSERQKDDGAEGVRLKEAKNINKSLSTLGHVIMALVDV 279
>gnl|CDD|238668 cd01372, KISc_KIF4, Kinesin motor domain, KIF4-like subfamily.
Members of this group seem to perform a variety of
functions, and have been implicated in neuronal
organelle transport and chromosome segregation during
mitosis. This catalytic (head) domain has ATPase
activity and belongs to the larger group of P-loop
NTPases. Kinesins are microtubule-dependent molecular
motors that play important roles in intracellular
transport and in cell division. In most kinesins, the
motor domain is found at the N-terminus (N-type). N-type
kinesins are (+) end-directed motors, i.e. they
transport cargo towards the (+) end of the microtubule.
Kinesin motor domains hydrolyze ATP at a rate of about
80 per second, and move along the microtubule at a speed
of about 6400 Angstroms per second. To achieve that,
kinesin head groups work in pairs. Upon replacing ADP
with ATP, a kinesin motor domain increases its affinity
for microtubule binding and locks in place. Also, the
neck linker binds to the motor domain, which repositions
the other head domain through the coiled-coil domain
close to a second tubulin dimer, about 80 Angstroms
along the microtubule. Meanwhile, ATP hydrolysis takes
place, and when the second head domain binds to the
microtubule, the first domain again replaces ADP with
ATP, triggering a conformational change that pulls the
first domain forward.
Length = 341
Score = 73.9 bits (182), Expect = 4e-15
Identities = 31/62 (50%), Positives = 34/62 (54%)
Query: 77 PQKAVDDMTDLTTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISAL 136
A D + SK VDLAGSER TGA G RLKEG +IN L LG VISAL
Sbjct: 221 GPIAPMSGDDKNSTLTSKFHFVDLAGSERLKKTGATGDRLKEGISINSGLLALGNVISAL 280
Query: 137 AE 138
+
Sbjct: 281 GD 282
>gnl|CDD|238660 cd01364, KISc_BimC_Eg5, Kinesin motor domain, BimC/Eg5 spindle pole
proteins, participate in spindle assembly and chromosome
segregation during cell division. This catalytic (head)
domain has ATPase activity and belongs to the larger
group of P-loop NTPases. Kinesins are
microtubule-dependent molecular motors that play
important roles in intracellular transport and in cell
division. In most kinesins, the motor domain is found at
the N-terminus (N-type), N-type kinesins are (+)
end-directed motors, i.e. they transport cargo towards
the (+) end of the microtubule. Kinesin motor domains
hydrolyze ATP at a rate of about 80 per second, and move
along the microtubule at a speed of about 6400 Angstroms
per second. To achieve that, kinesin head groups work in
pairs. Upon replacing ADP with ATP, a kinesin motor
domain increases its affinity for microtubule binding
and locks in place. Also, the neck linker binds to the
motor domain, which repositions the other head domain
through the coiled-coil domain close to a second tubulin
dimer, about 80 Angstroms along the microtubule.
Meanwhile, ATP hydrolysis takes place, and when the
second head domain binds to the microtubule, the first
domain again replaces ADP with ATP, triggering a
conformational change that pulls the first domain
forward.
Length = 352
Score = 73.1 bits (180), Expect = 7e-15
Identities = 39/93 (41%), Positives = 54/93 (58%), Gaps = 15/93 (16%)
Query: 91 KVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEITPHLVNLNEDP 150
K+ K++LVDLAGSE +GA+ R +E NIN+SL TLG+VI+AL E +PH+ P
Sbjct: 241 KIGKLNLVDLAGSENIGRSGAENKRAREAGNINQSLLTLGRVINALVEKSPHI------P 294
Query: 151 FMSECLIYYIKD---GRTK------VGSAESNL 174
+ L ++D GRTK + A NL
Sbjct: 295 YRESKLTRLLQDSLGGRTKTSIIATISPASINL 327
>gnl|CDD|238664 cd01368, KISc_KIF23_like, Kinesin motor domain, KIF23-like
subgroup. Members of this group may play a role in
mitosis. This catalytic (head) domain has ATPase
activity and belongs to the larger group of P-loop
NTPases. Kinesins are microtubule-dependent molecular
motors that play important roles in intracellular
transport and in cell division. In most kinesins, the
motor domain is found at the N-terminus (N-type). N-type
kinesins are (+) end-directed motors, i.e. they
transport cargo towards the (+) end of the microtubule.
Kinesin motor domains hydrolyze ATP at a rate of about
80 per second, and move along the microtubule at a speed
of about 6400 Angstroms per second. To achieve that,
kinesin head groups work in pairs. Upon replacing ADP
with ATP, a kinesin motor domain increases its affinity
for microtubule binding and locks in place. Also, the
neck linker binds to the motor domain, which repositions
the other head domain through the coiled-coil domain
close to a second tubulin dimer, about 80 Angstroms
along the microtubule. Meanwhile, ATP hydrolysis takes
place, and when the second head domain binds to the
microtubule, the first domain again replaces ADP with
ATP, triggering a conformational change that pulls the
first domain forward.
Length = 345
Score = 71.6 bits (176), Expect = 2e-14
Identities = 39/93 (41%), Positives = 44/93 (47%), Gaps = 5/93 (5%)
Query: 78 QKAVDDMTDLTTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALA 137
VD D T VS++SLVDLAGSER T G RLKE NIN SL TLGK I L
Sbjct: 228 DGDVDQDKDQIT--VSQLSLVDLAGSERTSRTQNTGERLKEAGNINTSLMTLGKCIEVLR 285
Query: 138 EITPHLVNLNEDPFMSECLIYYIK---DGRTKV 167
E P+ L + + DG K
Sbjct: 286 ENQLSGSTNKMVPYRDSKLTHLFQNYFDGEGKA 318
>gnl|CDD|215621 PLN03188, PLN03188, kinesin-12 family protein; Provisional.
Length = 1320
Score = 70.0 bits (171), Expect = 2e-13
Identities = 33/54 (61%), Positives = 42/54 (77%)
Query: 87 LTTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEIT 140
L++ K S+I+LVDLAGSER TGA G RLKE NIN+SL+ LG +I+ LAEI+
Sbjct: 323 LSSFKTSRINLVDLAGSERQKLTGAAGDRLKEAGNINRSLSQLGNLINILAEIS 376
>gnl|CDD|238017 cd00060, FHA, Forkhead associated domain (FHA); found in eukaryotic
and prokaryotic proteins. Putative nuclear signalling
domain. FHA domains may bind phosphothreonine,
phosphoserine and sometimes phosphotyrosine. In
eukaryotes, many FHA domain-containing proteins localize
to the nucleus, where they participate in establishing
or maintaining cell cycle checkpoints, DNA repair, or
transcriptional regulation. Members of the FHA family
include: Dun1, Rad53, Cds1, Mek1,
KAPP(kinase-associated protein phosphatase),and Ki-67 (a
human nuclear protein related to cell proliferation).
Length = 102
Score = 60.9 bits (148), Expect = 4e-12
Identities = 31/109 (28%), Positives = 44/109 (40%), Gaps = 14/109 (12%)
Query: 141 PHLVNLNEDPFMSECLIYYIKDGRT-KVGSAESNLPQESQDIQLSGSHIKTEHCTF--EN 197
P LV L+ D + YY+ G T +G N DI L + H +
Sbjct: 2 PRLVVLSGD---ASGRRYYLDPGGTYTIGRDSDN-----CDIVLDDPSVSRRHAVIRYDG 53
Query: 198 VEGVVTLIPFQEALCYVNGRQIS--EPTVLNTGSRVILGK-NHVFRFNH 243
GVV + +VNG+++S EP L G + LG + FRF
Sbjct: 54 DGGVVLIDLGSTNGTFVNGQRVSPGEPVRLRDGDVIRLGNTSISFRFES 102
>gnl|CDD|238663 cd01367, KISc_KIF2_like, Kinesin motor domain, KIF2-like group.
KIF2 is a protein expressed in neurons, which has been
associated with axonal transport and neuron development;
alternative splice forms have been implicated in
lysosomal translocation. This catalytic (head) domain
has ATPase activity and belongs to the larger group of
P-loop NTPases. Kinesins are microtubule-dependent
molecular motors that play important roles in
intracellular transport and in cell division. In this
subgroup the motor domain is found in the middle
(M-type) of the protein chain. M-type kinesins are (+)
end-directed motors, i.e. they transport cargo towards
the (+) end of the microtubule. Kinesin motor domains
hydrolyze ATP at a rate of about 80 per second, and move
along the microtubule at a speed of about 6400 Angstroms
per second (KIF2 may be slower). To achieve that,
kinesin head groups work in pairs. Upon replacing ADP
with ATP, a kinesin motor domain increases its affinity
for microtubule binding and locks in place. Also, the
neck linker binds to the motor domain, which repositions
the other head domain through the coiled-coil domain
close to a second tubulin dimer, about 80 Angstroms
along the microtubule. Meanwhile, ATP hydrolysis takes
place, and when the second head domain binds to the
microtubule, the first domain again replaces ADP with
ATP, triggering a conformational change that pulls the
first domain forward.
Length = 322
Score = 64.6 bits (158), Expect = 5e-12
Identities = 29/70 (41%), Positives = 36/70 (51%), Gaps = 8/70 (11%)
Query: 94 KISLVDLAGSER-ADSTGAKGTRLKEGANINKSLTTLGKVISALAEITPH-------LVN 145
K+S +DLAGSER AD++ KEGA INKSL L + I ALA H L
Sbjct: 224 KLSFIDLAGSERGADTSEHDRQTRKEGAEINKSLLALKECIRALASNKAHVPFRGSKLTQ 283
Query: 146 LNEDPFMSEC 155
+ D F+
Sbjct: 284 VLRDSFIGNS 293
>gnl|CDD|227392 COG5059, KIP1, Kinesin-like protein [Cytoskeleton].
Length = 568
Score = 64.4 bits (157), Expect = 1e-11
Identities = 35/50 (70%), Positives = 40/50 (80%)
Query: 93 SKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEITPH 142
SK+SLVDLAGSERA TG +GTRLKEGA+INKSL TLG VI+AL +
Sbjct: 234 SKLSLVDLAGSERAARTGNRGTRLKEGASINKSLLTLGNVINALGDKKKS 283
>gnl|CDD|238671 cd01375, KISc_KIF9_like, Kinesin motor domain, KIF9-like subgroup;
might play a role in cell shape remodeling. This
catalytic (head) domain has ATPase activity and belongs
to the larger group of P-loop NTPases. Kinesins are
microtubule-dependent molecular motors that play
important roles in intracellular transport and in cell
division. In most kinesins, the motor domain is found at
the N-terminus (N-type). N-type kinesins are (+)
end-directed motors, i.e. they transport cargo towards
the (+) end of the microtubule. Kinesin motor domains
hydrolyze ATP at a rate of about 80 per second, and move
along the microtubule at a speed of about 6400 Angstroms
per second. To achieve that, kinesin head groups work in
pairs. Upon replacing ADP with ATP, a kinesin motor
domain increases its affinity for microtubule binding
and locks in place. Also, the neck linker binds to the
motor domain, which repositions the other head domain
through the coiled-coil domain close to a second tubulin
dimer, about 80 Angstroms along the microtubule.
Meanwhile, ATP hydrolysis takes place, and when the
second head domain binds to the microtubule, the first
domain again replaces ADP with ATP, triggering a
conformational change that pulls the first domain
forward.
Length = 334
Score = 61.0 bits (148), Expect = 1e-10
Identities = 28/47 (59%), Positives = 35/47 (74%)
Query: 92 VSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAE 138
+SK++LVDLAGSER TG G LKE INKSL+ L +VI+AL+E
Sbjct: 234 LSKLNLVDLAGSERVSKTGVSGQVLKEAKYINKSLSFLEQVINALSE 280
>gnl|CDD|238672 cd01376, KISc_KID_like, Kinesin motor domain, KIF22/Kid-like
subgroup. Members of this group might play a role in
regulating chromosomal movement along microtubules in
mitosis. This catalytic (head) domain has ATPase
activity and belongs to the larger group of P-loop
NTPases. Kinesins are microtubule-dependent molecular
motors that play important roles in intracellular
transport and in cell division. In most kinesins, the
motor domain is found at the N-terminus (N-type). N-type
kinesins are (+) end-directed motors, i.e. they
transport cargo towards the (+) end of the microtubule.
Kinesin motor domains hydrolyze ATP at a rate of about
80 per second, and move along the microtubule at a speed
of about 6400 Angstroms per second. To achieve that,
kinesin head groups work in pairs. Upon replacing ADP
with ATP, a kinesin motor domain increases its affinity
for microtubule binding and locks in place. Also, the
neck linker binds to the motor domain, which repositions
the other head domain through the coiled-coil domain
close to a second tubulin dimer, about 80 Angstroms
along the microtubule. Meanwhile, ATP hydrolysis takes
place, and when the second head domain binds to the
microtubule, the first domain again replaces ADP with
ATP, triggering a conformational change that pulls the
first domain forward.
Length = 319
Score = 57.1 bits (138), Expect = 2e-09
Identities = 25/44 (56%), Positives = 30/44 (68%)
Query: 93 SKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISAL 136
K++L+DLAGSE TG +G RLKE A IN SL L KV+ AL
Sbjct: 221 GKLNLIDLAGSEDNRRTGNEGIRLKESAAINSSLFVLSKVVDAL 264
>gnl|CDD|215951 pfam00498, FHA, FHA domain. The FHA (Forkhead-associated) domain
is a phosphopeptide binding motif.
Length = 67
Score = 43.0 bits (102), Expect = 5e-06
Identities = 16/73 (21%), Positives = 24/73 (32%), Gaps = 9/73 (12%)
Query: 165 TKVGSAESNLPQESQDIQLSGSHIKTEHCTFENVEG-VVTLIPFQ-EALCYVNGRQIS-E 221
+G + DI L + H G L +VNG+++ E
Sbjct: 1 VTIGRSPDC------DIVLDDPSVSRRHAEIRYDGGGRFYLEDLGSTNGTFVNGQRLGPE 54
Query: 222 PTVLNTGSRVILG 234
P L G + LG
Sbjct: 55 PVRLRDGDVIRLG 67
>gnl|CDD|214578 smart00240, FHA, Forkhead associated domain. Found in eukaryotic
and prokaryotic proteins. Putative nuclear signalling
domain.
Length = 52
Score = 34.8 bits (81), Expect = 0.003
Identities = 16/57 (28%), Positives = 21/57 (36%), Gaps = 7/57 (12%)
Query: 165 TKVGSAESNLPQESQDIQLSGSHIKTEHCTFENVEG-VVTLIPFQ-EALCYVNGRQI 219
+G + E DIQL G I H G LI +VNG++I
Sbjct: 1 VTIGRSS-----EDCDIQLDGPSISRRHAVIVYDGGGRFYLIDLGSTNGTFVNGKRI 52
>gnl|CDD|233905 TIGR02515, IV_pilus_PilQ, type IV pilus secretin (or competence
protein) PilQ. A number of proteins homologous to PilQ
are involved in type IV pilus formation, competence for
transformation, type III secretion, and type II
secretion (also called the main terminal branch of the
general secretion pathway). Members of this family
include PilQ itself, which is a component of the type IV
pilus structure, from a number of species. In
Haemophilus influenzae, the member of this family is
associated with competence for transformation with
exogenous DNA rather than with formation of a type IV
pilus; the surface structure required for competence may
be considered an unusual, incomplete type IV pilus
structure [Cell envelope, Surface structures].
Length = 418
Score = 30.7 bits (70), Expect = 0.83
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 7/51 (13%)
Query: 3 KNEDGNIQTVAPASVIAEEAVDQLQASEKLIAELNETWEEKLKRTEEIRIQ 53
K DGNI +AP +A + D+L+A +K I L E L +TE I++
Sbjct: 62 KRRDGNIIYIAPLDELAAQEKDELEA-KKQIENL-----EPL-QTELIQLN 105
>gnl|CDD|236912 PRK11448, hsdR, type I restriction enzyme EcoKI subunit R;
Provisional.
Length = 1123
Score = 29.1 bits (66), Expect = 2.6
Identities = 33/120 (27%), Positives = 55/120 (45%), Gaps = 19/120 (15%)
Query: 10 QTVAPASVIAEEAVDQLQASEKLIAELNETWEEKLKRTEEIRIQREAVFAEMGVAVKEDG 69
+ A + +AE +L A E L AEL E +E + E+++ + E KE
Sbjct: 163 REKAQSQALAEAQQQELVALEGLAAELEEKQQELEAQLEQLQEKAAETSQERKQKRKEIT 222
Query: 70 NTVGVFSPQKAVDDMTDLTTEKVSKISLVD----LAGSERADS---TGAKGTRLKEGANI 122
+A + +L +E+ ++I L+D AG E ADS +KG R ++G N+
Sbjct: 223 --------DQAAKRL-EL-SEEETRI-LIDQQLRKAGWE-ADSKTLRFSKGARPEKGRNL 270
>gnl|CDD|217203 pfam02724, CDC45, CDC45-like protein. CDC45 is an essential gene
required for initiation of DNA replication in S.
cerevisiae, forming a complex with MCM5/CDC46.
Homologues of CDC45 have been identified in human, mouse
and smut fungus among others.
Length = 583
Score = 28.8 bits (65), Expect = 4.1
Identities = 7/27 (25%), Positives = 11/27 (40%)
Query: 235 KNHVFRFNHPDQVRVHRENKKNASDKS 261
++ V R N + N K+ D S
Sbjct: 243 QDEVSRLNPRNINGEDPTNTKSPDDMS 269
>gnl|CDD|233724 TIGR02095, glgA, glycogen/starch synthase, ADP-glucose type. This
family consists of glycogen (or starch) synthases that
use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose
(EC 2.4.1.11) as in animals, as the glucose donor. This
enzyme is found in bacteria and plants. Whether the name
given is glycogen synthase or starch synthase depends on
context, and therefore on substrate [Energy metabolism,
Biosynthesis and degradation of polysaccharides].
Length = 473
Score = 28.4 bits (64), Expect = 4.3
Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 10/49 (20%)
Query: 37 NETWEEKLKRTEEIRIQREAVFAEMGVAVKEDGNTVGV---FSPQKAVD 82
+ K + +EA+ E+G+ V +D GV + QK VD
Sbjct: 266 ADDLAGKAEN-------KEALQEELGLPVDDDVPLFGVISRLTQQKGVD 307
>gnl|CDD|219396 pfam07388, A-2_8-polyST, Alpha-2,8-polysialyltransferase (POLYST).
This family contains the bacterial enzyme
alpha-2,8-polysialyltransferase (EC:2.4.99.-)
(approximately 500 residues long). This catalyzes the
polycondensation of alpha-2,8-linked sialic acid
required for the synthesis of polysialic acid (PSA).
Length = 414
Score = 28.4 bits (63), Expect = 5.3
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 135 ALAEITPHLVNLNEDPFMSECLIYYIK 161
+ +I P LV +NE PF+ E LIY K
Sbjct: 293 NMVKINPRLVVINEPPFLIEPLIYLTK 319
>gnl|CDD|221463 pfam12211, LMWSLP_N, Low molecular weight S layer protein N
terminal. This family of proteins is found in bacteria.
Proteins in this family are typically between 328 and
381 amino acids in length. There is a conserved LGDG
sequence motif. Clostridial species have a layer of
surface proteins surrounding their membrane. This layer
is comprised of a high molecular weight protein and a
low molecular weight protein. This domain is the N
terminal domain of the low molecular weight protein. It
is a structural domain.
Length = 253
Score = 27.4 bits (61), Expect = 6.9
Identities = 18/76 (23%), Positives = 27/76 (35%), Gaps = 3/76 (3%)
Query: 63 VAVKEDGNTVGVFSPQKAVDDMTDLTTEKVSKISLVDLAGSERADSTGAKGTR---LKEG 119
V + ++ A+ T T V +DLA S + DS K
Sbjct: 166 VKYGTVKDGTTTYTTGTAITFDTTELTVTVGDGKTLDLAKSLKFDSATGVAGLKVSGKVT 225
Query: 120 ANINKSLTTLGKVISA 135
K+ TT +VI+A
Sbjct: 226 TTSGKTGTTKVRVINA 241
>gnl|CDD|226055 COG3524, KpsE, Capsule polysaccharide export protein [Cell envelope
biogenesis, outer membrane].
Length = 372
Score = 27.5 bits (61), Expect = 8.5
Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
Query: 11 TVAPASVIAEEAVDQLQASEKLIAELNE-TWEEKLKRTEEIRIQREAVFAEMGVAVKEDG 69
A IA+ + Q SEKLI +L+E + ++ EE + E + + +
Sbjct: 150 DPKEAQKIAQAILKQ---SEKLINQLSERARRDTVRFAEEEVQKAEERVKKASNDLTDYR 206
Query: 70 NTVGVFSPQK 79
GVF P+
Sbjct: 207 IKNGVFDPKA 216
>gnl|CDD|153144 cd04872, ACT_1ZPV, ACT domain proteins similar to the yet
uncharacterized Streptococcus pneumoniae ACT domain
protein. This CD, ACT_1ZPV, includes those single ACT
domain proteins similar to the yet uncharacterized
Streptococcus pneumoniae ACT domain protein (pdb
structure 1ZPV). Members of this CD belong to the
superfamily of ACT regulatory domains.
Length = 88
Score = 25.7 bits (57), Expect = 9.2
Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 33 IAELNETWEEKLKRTE-EIRIQREAVFAEM 61
AEL E EE K +IRIQ E +F M
Sbjct: 56 FAELQEELEELGKELGVKIRIQHEDIFKAM 85
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.310 0.128 0.347
Gapped
Lambda K H
0.267 0.0799 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 13,298,559
Number of extensions: 1247990
Number of successful extensions: 1053
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1048
Number of HSP's successfully gapped: 50
Length of query: 275
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 179
Effective length of database: 6,679,618
Effective search space: 1195651622
Effective search space used: 1195651622
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 58 (26.0 bits)