RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7272
(275 letters)
>1wln_A Afadin; beta sandwich, FHA domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus} SCOP: b.26.1.2
Length = 120
Score = 142 bits (360), Expect = 2e-43
Identities = 40/112 (35%), Positives = 63/112 (56%), Gaps = 7/112 (6%)
Query: 140 TPHLVNLNEDPFMS--ECLIYYIKDGRTKVGSAESNLPQESQDIQLSGSHIKTEHCTFEN 197
P+LV L+ D S + +Y ++ T+VG+ + + IQL G I+ HC N
Sbjct: 11 LPYLVELSPDGSDSRDKPKLYRLQLSVTEVGTEKFD----DNSIQLFGPGIQPHHCDLTN 66
Query: 198 VEGVVTLIPF-QEALCYVNGRQISEPTVLNTGSRVILGKNHVFRFNHPDQVR 248
++GVVT+ P +A YV+G++ISE T+L +G R+ G +HVF+F P
Sbjct: 67 MDGVVTVTPRSMDAETYVDGQRISETTMLQSGMRLQFGTSHVFKFVDPSGPS 118
>2g1l_A Kinesin-like protein KIF1C; transport, FHA domain, structural
genomics consortium, kines transport protein; 2.60A
{Homo sapiens} SCOP: b.26.1.2
Length = 104
Score = 132 bits (334), Expect = 1e-39
Identities = 59/109 (54%), Positives = 78/109 (71%), Gaps = 12/109 (11%)
Query: 140 TPHLVNLNEDPFMSECLIYYIKDGRTKVGSAESNLPQESQDIQLSGSHIKTEHCTFENV- 198
TPHLVNLNEDP MSECL+Y+IKDG T+VG + DI+L+G I+ +HC F ++
Sbjct: 3 TPHLVNLNEDPLMSECLLYHIKDGVTRVGQVD-------MDIKLTGQFIREQHCLFRSIP 55
Query: 199 ----EGVVTLIPFQEALCYVNGRQISEPTVLNTGSRVILGKNHVFRFNH 243
E VVTL P + A YVNG+ ++EP VL +G+R+++GKNHVFRFNH
Sbjct: 56 QPDGEVVVTLEPCEGAETYVNGKLVTEPLVLKSGNRIVMGKNHVFRFNH 104
>3fm8_A Kinesin-like protein KIF13B; kinesin, GAP, GTPase activation,
structural genomics consort ATP-binding, cytoskeleton,
microtubule, motor protein, NUCL binding; 2.30A {Homo
sapiens} PDB: 3mdb_A*
Length = 124
Score = 129 bits (325), Expect = 5e-38
Identities = 46/106 (43%), Positives = 59/106 (55%), Gaps = 8/106 (7%)
Query: 140 TPHLVNLNEDPFMSECLIYYIKDGRTKVGSAESNLPQESQDIQLSGSHIKTEHCTFE-NV 198
LVNLN DP ++E L+YY+K+ T +GSA S DIQL G I EHC +
Sbjct: 26 KCFLVNLNADPALNELLVYYLKEH-TLIGSANSQ------DIQLCGMGILPEHCIIDITS 78
Query: 199 EGVVTLIPFQEALCYVNGRQISEPTVLNTGSRVILGKNHVFRFNHP 244
EG V L P + +VNG +S P L+ G R++ G NH FR N P
Sbjct: 79 EGQVMLTPQKNTRTFVNGSSVSSPIQLHHGDRILWGNNHFFRLNLP 124
Score = 28.7 bits (64), Expect = 1.1
Identities = 5/25 (20%), Positives = 11/25 (44%)
Query: 44 LKRTEEIRIQREAVFAEMGVAVKED 68
+ RE ++ + G+ V +D
Sbjct: 1 MHHHHHHSSGRENLYFQGGIKVGDD 25
>2eh0_A KLP, kinesin-like protein KIF1B; FHA domain, KIAA0591, KIAA1448,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 130
Score = 127 bits (319), Expect = 5e-37
Identities = 69/124 (55%), Positives = 87/124 (70%), Gaps = 8/124 (6%)
Query: 140 TPHLVNLNEDPFMSECLIYYIKDGRTKVGSAESNLPQESQDIQLSGSHIKTEHCTFENVE 199
TPHLVNLNEDP MSECL+YYIKDG T+VG A++ QDI LSG+HIK EHC F +
Sbjct: 8 TPHLVNLNEDPLMSECLLYYIKDGITRVGQADAE---RRQDIVLSGAHIKEEHCIFRSER 64
Query: 200 G-----VVTLIPFQEALCYVNGRQISEPTVLNTGSRVILGKNHVFRFNHPDQVRVHRENK 254
+VTL P + + YVNG+++S+P L +G+R+I+GKNHVFRFNHP+Q R RE
Sbjct: 65 SNSGEVIVTLEPCERSETYVNGKRVSQPVQLRSGNRIIMGKNHVFRFNHPEQARAEREKT 124
Query: 255 KNAS 258
S
Sbjct: 125 SGPS 128
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha
and beta protein, enzyme, ATPase, P-loop, motor protein,
ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus}
SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A*
2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C*
1ia0_K* 2hxh_C*
Length = 366
Score = 121 bits (305), Expect = 2e-32
Identities = 55/63 (87%), Positives = 58/63 (92%)
Query: 78 QKAVDDMTDLTTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALA 137
QK D T++TTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALA
Sbjct: 227 QKRHDAETNITTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALA 286
Query: 138 EIT 140
E+
Sbjct: 287 EMD 289
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics,
structural genomics consortium, SGC, ATP-binding,
microtubule, motor protein; HET: ADP; 2.10A {Homo
sapiens}
Length = 354
Score = 120 bits (304), Expect = 2e-32
Identities = 41/61 (67%), Positives = 46/61 (75%)
Query: 78 QKAVDDMTDLTTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALA 137
D + + EKV K+SLVDLAGSERA TGA G RLKEG+NINKSLTTLG VISALA
Sbjct: 229 HTLYDVKSGTSGEKVGKLSLVDLAGSERATKTGAAGDRLKEGSNINKSLTTLGLVISALA 288
Query: 138 E 138
+
Sbjct: 289 D 289
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain,
ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora
crassa}
Length = 443
Score = 120 bits (302), Expect = 2e-31
Identities = 42/61 (68%), Positives = 49/61 (80%)
Query: 78 QKAVDDMTDLTTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALA 137
Q D TD TTE+ S+I LVDLAGSERA ST A G RL+EG+NINKSLTTLG+VI+ALA
Sbjct: 278 QIHHDLETDDTTERSSRIRLVDLAGSERAKSTEATGQRLREGSNINKSLTTLGRVIAALA 337
Query: 138 E 138
+
Sbjct: 338 D 338
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule,
ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Length = 350
Score = 113 bits (284), Expect = 2e-29
Identities = 31/61 (50%), Positives = 38/61 (62%)
Query: 82 DDMTDLTTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEITP 141
+ + + +V K++LVDLAGSER TGA G L EGA IN SL+ LG VIS L E
Sbjct: 224 EVIENKEVIRVGKLNLVDLAGSERQSKTGATGETLVEGAKINLSLSALGLVISKLVEGAT 283
Query: 142 H 142
H
Sbjct: 284 H 284
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP
complex, stranded beta-sheet core with solvent exposed
alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Length = 349
Score = 108 bits (273), Expect = 6e-28
Identities = 32/62 (51%), Positives = 43/62 (69%), Gaps = 1/62 (1%)
Query: 78 QKAVDDMTDL-TTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISAL 136
+ + ++ + KVS ++LVDLAGSERA TGA G RLKEG NIN+SL LG+VI L
Sbjct: 212 SREKGEPSNCEGSVKVSHLNLVDLAGSERAAQTGAAGVRLKEGCNINRSLFILGQVIKKL 271
Query: 137 AE 138
++
Sbjct: 272 SD 273
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding,
microtubule binding, ATP- cell projection, cytoskeleton,
glycoprotein, microtubule; HET: ADP; 2.20A {Homo
sapiens}
Length = 355
Score = 108 bits (271), Expect = 2e-27
Identities = 32/61 (52%), Positives = 44/61 (72%), Gaps = 1/61 (1%)
Query: 78 QKAVDDMTDLTTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALA 137
Q+ + +++K+SL+DLAGSERA ++GAKGTR EG NIN+SL LG VI+ALA
Sbjct: 238 QQDKTASIN-QNVRIAKMSLIDLAGSERASTSGAKGTRFVEGTNINRSLLALGNVINALA 296
Query: 138 E 138
+
Sbjct: 297 D 297
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor
domain, ADP, SGC, ATP-binding, coiled coil, microtubule,
motor protein; HET: ADP; 1.80A {Homo sapiens} PDB:
3b6v_A*
Length = 372
Score = 108 bits (271), Expect = 2e-27
Identities = 31/61 (50%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 78 QKAVDDMTDLTTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALA 137
V + +V K++LVDLAGSER TGA+G RLKE IN SL+ LG VISAL
Sbjct: 238 CSEVGLDGE-NHIRVGKLNLVDLAGSERQAKTGAQGERLKEATKINLSLSALGNVISALV 296
Query: 138 E 138
+
Sbjct: 297 D 297
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural
genomics consortium domain, ADP, SGC, ATP-binding,
DNA-binding, microtubule, MO protein; HET: ADP; 2.30A
{Homo sapiens}
Length = 388
Score = 107 bits (270), Expect = 3e-27
Identities = 27/60 (45%), Positives = 34/60 (56%)
Query: 83 DMTDLTTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEITPH 142
+ ++ K+ L+DLAGSE TG KG RLKE IN SL LGKV+ AL + P
Sbjct: 237 ERLAPFRQREGKLYLIDLAGSEDNRRTGNKGLRLKESGAINTSLFVLGKVVDALNQGLPR 296
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule,
ADP, nucleotide-binding protein, ATP-binding, coiled
coil, motor protein; HET: ADP; 1.90A {Drosophila
melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Length = 344
Score = 106 bits (267), Expect = 4e-27
Identities = 20/54 (37%), Positives = 31/54 (57%)
Query: 89 TEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEITPH 142
S++++VDLAGSE TG +G +EG NIN L ++ KV+ ++A
Sbjct: 231 KTHHSRMNIVDLAGSEGVRRTGHEGVARQEGVNINLGLLSINKVVMSMAAGHTV 284
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A
{Neurospora crassa} SCOP: c.37.1.9
Length = 355
Score = 106 bits (266), Expect = 7e-27
Identities = 26/54 (48%), Positives = 35/54 (64%)
Query: 85 TDLTTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAE 138
+ + K ++ LVDLAGSE+ TGA G L+E INKSL+ LG VI+AL +
Sbjct: 221 VETGSAKSGQLFLVDLAGSEKVGKTGASGQTLEEAKKINKSLSALGMVINALTD 274
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker,
cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP:
c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A*
2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A*
2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A*
1q0b_A* ...
Length = 359
Score = 106 bits (266), Expect = 8e-27
Identities = 31/65 (47%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 78 QKAVDDMTDLTTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALA 137
K + K+ K++LVDLAGSE +GA R +E NIN+SL TLG+VI+AL
Sbjct: 236 MKETTIDGE-ELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALV 294
Query: 138 EITPH 142
E TPH
Sbjct: 295 ERTPH 299
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP;
1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A*
2kin_A* 3kin_A*
Length = 325
Score = 105 bits (264), Expect = 1e-26
Identities = 31/58 (53%), Positives = 38/58 (65%)
Query: 85 TDLTTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEITPH 142
T + K+ LVDLAGSE+ TGA+G L E NINKSL+ LG VISALAE + +
Sbjct: 217 TQTEQKLSGKLYLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGSTY 274
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain;
HET: ADP; 1.60A {Homo sapiens} PDB: 2xt3_A*
Length = 344
Score = 101 bits (255), Expect = 2e-25
Identities = 29/48 (60%), Positives = 31/48 (64%)
Query: 91 KVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAE 138
VSK VDLAGSER TG+ G RLKE IN SL LG VISAL +
Sbjct: 241 LVSKFHFVDLAGSERVLKTGSTGERLKESIQINSSLLALGNVISALGD 288
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics,
structural genomics consortium, SGC, contractIle
protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Length = 358
Score = 101 bits (255), Expect = 2e-25
Identities = 26/61 (42%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Query: 78 QKAVDDMTDLTTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALA 137
+ + SKI+LVDLAGSER +G++G LKE INKSL+ L + I AL
Sbjct: 244 AHSRTLSEE--KYITSKINLVDLAGSERLGKSGSEGQVLKEATYINKSLSFLEQAIIALG 301
Query: 138 E 138
+
Sbjct: 302 D 302
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing
nucleosi triphosphate hydrolases, microtubule motor
protein; HET: ADP; 2.35A {Ashbya gossypii}
Length = 349
Score = 99.2 bits (248), Expect = 2e-24
Identities = 27/50 (54%), Positives = 33/50 (66%)
Query: 89 TEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAE 138
K++LVDLAGSER +S+ G RL+E NINKSL+ LG VI AL
Sbjct: 237 ETSQGKLNLVDLAGSERINSSAVTGERLRETQNINKSLSCLGDVIYALNT 286
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A
{Drosophila melanogaster} PDB: 2y5w_A*
Length = 365
Score = 98.8 bits (247), Expect = 4e-24
Identities = 30/54 (55%), Positives = 37/54 (68%)
Query: 85 TDLTTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAE 138
+ + K+ LVDLAGSE+ TGA+GT L E NINKSL+ LG VISALA+
Sbjct: 224 LENQKKLSGKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSALGNVISALAD 277
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis,
GTP-binding, motor protein, cell division, cell cycle,
microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A
{Drosophila melanogaster}
Length = 373
Score = 97.3 bits (243), Expect = 1e-23
Identities = 29/66 (43%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 78 QKAVDDMTDLTTEKVSKISLVDLAGSERADSTG-AKGTRLKEGANINKSLTTLGKVISAL 136
+ + K+ K++LVDLAGSE G KG R++E NIN+SL TLG+VI+AL
Sbjct: 246 IRENGIEGE-DMLKIGKLNLVDLAGSENVSKAGNEKGIRVRETVNINQSLLTLGRVITAL 304
Query: 137 AEITPH 142
+ PH
Sbjct: 305 VDRAPH 310
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural
genomics, structur Al genomics consortium, SGC; HET:
ADP; 1.85A {Homo sapiens}
Length = 330
Score = 94.9 bits (237), Expect = 6e-23
Identities = 30/61 (49%), Positives = 40/61 (65%), Gaps = 2/61 (3%)
Query: 84 MTDLTTE--KVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEITP 141
D +T K++LVDLAGSER +GA+G+RL+E +INKSL+ LG VI+AL
Sbjct: 217 GVDCSTGLRTTGKLNLVDLAGSERVGKSGAEGSRLREAQHINKSLSALGDVIAALRSRQG 276
Query: 142 H 142
H
Sbjct: 277 H 277
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics,
structural genomics consortium, SGC, structural protein;
HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Length = 387
Score = 95.8 bits (239), Expect = 6e-23
Identities = 24/54 (44%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 90 EKVSKISLVDLAGSERADSTGAKGTRLK-EGANINKSLTTLGKVISALAEITPH 142
K SLVDLAG+ER T + + + EGA INKSL L + I AL + H
Sbjct: 277 RMHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAH 330
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein,
microtubinding proteinbule, contractIle protein; HET:
ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9
PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Length = 347
Score = 94.6 bits (236), Expect = 1e-22
Identities = 26/57 (45%), Positives = 35/57 (61%), Gaps = 2/57 (3%)
Query: 84 MTDLTTE--KVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAE 138
++ T ++LVDLAGSER + + G RL+E NINKSL+ LG VI AL +
Sbjct: 227 GSNAKTGAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQ 283
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P;
HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB:
1v8j_A* 2gry_A*
Length = 410
Score = 95.4 bits (238), Expect = 1e-22
Identities = 24/56 (42%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 88 TTEKVSKISLVDLAGSERADSTGAKGTRLK-EGANINKSLTTLGKVISALAEITPH 142
K SLVDLAG+ER T + + + EGA INKSL L + I AL + H
Sbjct: 295 KGRLHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAH 350
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11,
conformation, nucleotide, ATP-binding, microtubule,
motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP:
c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Length = 369
Score = 94.6 bits (236), Expect = 1e-22
Identities = 31/61 (50%), Positives = 40/61 (65%), Gaps = 2/61 (3%)
Query: 84 MTDLTTE--KVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEITP 141
T+L T+ K+S VDLAGSER +G+ G +LKE +INKSL+ LG VISAL+
Sbjct: 216 STNLQTQAIARGKLSFVDLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVISALSSGNQ 275
Query: 142 H 142
H
Sbjct: 276 H 276
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport
protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Length = 360
Score = 91.9 bits (229), Expect = 1e-21
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 88 TTEKVSKISLVDLAGSERADSTGAKGTRLK-EGANINKSLTTLGKVISALAEITPH 142
+ KI+ +DLAGSER T ++ + + +GANIN+SL L + I A+ H
Sbjct: 225 KNTSLGKIAFIDLAGSERGADTVSQNKQTQTDGANINRSLLALKECIRAMDSDKNH 280
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor
domain, ADP, binding, cell cycle, cell division,
endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Length = 376
Score = 92.0 bits (229), Expect = 1e-21
Identities = 28/58 (48%), Positives = 34/58 (58%), Gaps = 4/58 (6%)
Query: 89 TEKVSKISLVDLAGSERADSTGAKGT----RLKEGANINKSLTTLGKVISALAEITPH 142
+ + +SLVDLAGSER D A G RL+E IN SL+TLG VI AL+ H
Sbjct: 268 LQCGAPLSLVDLAGSERLDPGLALGPGERERLRETQAINSSLSTLGLVIMALSNKESH 325
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor
homology domain, karyog mitosis, microtubules; HET: ADP
EBC; 2.30A {Saccharomyces cerevisiae}
Length = 403
Score = 91.2 bits (227), Expect = 3e-21
Identities = 26/57 (45%), Positives = 35/57 (61%), Gaps = 2/57 (3%)
Query: 84 MTDLTTE--KVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAE 138
++ T ++LVDLAGSER + + G RL+E NINKSL+ LG VI AL +
Sbjct: 283 GSNAKTGAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSALGDVIHALGQ 339
>3u06_A Protein claret segregational; motor domain, stalk rotation, power
stroke, kinesin-14, MICR binding, NCD, transport,
molecular motor; HET: ADP GOL; 2.35A {Drosophila
melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Length = 412
Score = 84.2 bits (209), Expect = 1e-18
Identities = 24/61 (39%), Positives = 30/61 (49%), Gaps = 6/61 (9%)
Query: 84 MTDLTTE--KVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEITP 141
+ V I+LVDLAGSE TR+ E NIN+SL+ L VI AL +
Sbjct: 275 GRHAEKQEISVGSINLVDLAGSES----PKTSTRMTETKNINRSLSELTNVILALLQKQD 330
Query: 142 H 142
H
Sbjct: 331 H 331
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 53.1 bits (127), Expect = 4e-08
Identities = 37/204 (18%), Positives = 66/204 (32%), Gaps = 69/204 (33%)
Query: 16 SVIAEEAVDQLQASEKLIAELNE-----TWE---EKLKRT---------------EEIR- 51
++I E VD +EK+ E+NE T+ L T E+++
Sbjct: 1690 AMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKS 1749
Query: 52 ---IQREAVFAEMG---------VAVK-----ED--------GNTVGVFSPQKAVD---- 82
I +A FA G ++ E G T+ V P+ +
Sbjct: 1750 KGLIPADATFA--GHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNY 1807
Query: 83 DMTDLTTEKVSKISLVDLAGSERADSTGAKGTRLKEGANIN------------KSLTTLG 130
M + +V+ S A + G + L E N N ++L T+
Sbjct: 1808 GMIAINPGRVAA-SFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVT 1866
Query: 131 KVISALAEITPHLVNLNEDPFMSE 154
V++ + ++ L + E
Sbjct: 1867 NVLNFIKLQKIDIIELQK-SLSLE 1889
Score = 34.3 bits (78), Expect = 0.055
Identities = 21/119 (17%), Positives = 42/119 (35%), Gaps = 46/119 (38%)
Query: 1 VVKNEDGN----IQTVAPASVIA---EEAVDQLQASEKLIAELNETWEEKLKRTEEIRIQ 53
V ++E G + + P V A +EA+ + ++ + + +
Sbjct: 1797 VPRDELGRSNYGMIAINPGRVAASFSQEAL------QYVVERVGKRTGWLV--------- 1841
Query: 54 REAV-FAEMGVAVKEDGNTVGVFSPQ-------KAVDDMTD-LTTEKVSKISLVDLAGS 103
E V + N Q +A+D +T+ L K+ KI +++L S
Sbjct: 1842 -EIVNY-----------NVENQ---QYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKS 1885
>1r21_A Antigen KI-67; beta sandwich, cell cycle; NMR {Homo sapiens} SCOP:
b.26.1.2 PDB: 2aff_A*
Length = 128
Score = 44.0 bits (104), Expect = 5e-06
Identities = 19/88 (21%), Positives = 29/88 (32%), Gaps = 8/88 (9%)
Query: 158 YYIKDGRTKVGSAESNLPQESQDIQLSGSHIKTEHCTFENVEGVVTLIPFQEA-LCYVNG 216
+ + G DI++ + +HC E E L F VNG
Sbjct: 28 FPLSLSTCLFGRGIEC------DIRIQLPVVSKQHCKIEIHEQEAILHNFSSTNPTQVNG 81
Query: 217 RQISEPTVLNTGSRVILGKNHVFRFNHP 244
I EP L G + + FR+ +
Sbjct: 82 SVIDEPVRLKHGDVITIID-RSFRYENE 108
>2jqj_A DNA damage response protein kinase DUN1; protein/phosphopeptide,
cell cycle; HET: DNA; NMR {Saccharomyces cerevisiae}
PDB: 2jql_A*
Length = 151
Score = 43.5 bits (102), Expect = 1e-05
Identities = 27/122 (22%), Positives = 44/122 (36%), Gaps = 18/122 (14%)
Query: 134 SALAEITPHLVNLNEDPFMSECLIYYIKDGRTKVGSAESNLPQESQDIQLSGSHIKTEHC 193
S+ HLVNL E + T +G + S D+ LS I T H
Sbjct: 12 SSEYTCLGHLVNLIPGK---EQKVEITNRNVTTIGRSRSC------DVILSEPDISTFHA 62
Query: 194 TFENVEGVVTLIPFQEALC--------YVNGRQISE-PTVLNTGSRVILGKNHVFRFNHP 244
F ++ V ++NG ++ + +L G R++ GK+ F F +
Sbjct: 63 EFHLLQMDVDNFQRNLINVIDKSRNGTFINGNRLVKKDYILKNGDRIVFGKSCSFLFKYA 122
Query: 245 DQ 246
Sbjct: 123 SS 124
>2kin_B Kinesin; motor protein, cytoskeleton; HET: ADP; 2.00A {Rattus
norvegicus} SCOP: c.37.1.9
Length = 100
Score = 37.3 bits (87), Expect = 6e-04
Identities = 15/18 (83%), Positives = 16/18 (88%)
Query: 121 NINKSLTTLGKVISALAE 138
NINKSL+ LG VISALAE
Sbjct: 3 NINKSLSALGNVISALAE 20
>3gqs_A Adenylate cyclase-like protein; FHA domain, structural genomics,
PSI-2, protein structure in midwest center for
structural genomics, MCSG; 2.20A {Chlamydia trachomatis}
Length = 106
Score = 37.3 bits (87), Expect = 8e-04
Identities = 9/34 (26%), Positives = 13/34 (38%), Gaps = 1/34 (2%)
Query: 213 YVNGRQISEPTVLNTGSRVILGKNHVFRFNHPDQ 246
V GR+I + L+ V LG +F
Sbjct: 72 IVEGRKIEHQSTLSANQVVALGT-TLFLLVDYAA 104
>3hx1_A SLR1951 protein; P74513_SYNY3, adenylate cyclase-like protein,
NESG, structural genomics, PSI-2, protein structure
initiative; 2.50A {Synechocystis SP}
Length = 131
Score = 34.4 bits (79), Expect = 0.010
Identities = 11/101 (10%), Positives = 33/101 (32%), Gaps = 18/101 (17%)
Query: 157 IYYIKDGRTKVGSAESNLPQESQDIQLSGSHIKTEHCTFENVEGVVTLIPFQ------EA 210
+ + +G + DI++ + H ++ +
Sbjct: 24 EVLLTETFYTIGRSPRA------DIRIKSQFVSRIHAVLVRKSSDDVQAAYRIIDGDEDG 77
Query: 211 L-----CYVNGRQISEPTVLNTGSRVILGKNHVFRFNHPDQ 246
+NG+++ E ++ TG +++G R+ + +
Sbjct: 78 QSSVNGLMINGKKVQEH-IIQTGDEIVMGPQVSVRYEYRRR 117
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A
{Rattus norvegicus} SCOP: c.37.1.9
Length = 117
Score = 33.1 bits (76), Expect = 0.028
Identities = 13/16 (81%), Positives = 14/16 (87%)
Query: 123 NKSLTTLGKVISALAE 138
NKSL+ LG VISALAE
Sbjct: 1 NKSLSALGNVISALAE 16
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.3 bits (67), Expect = 0.37
Identities = 10/29 (34%), Positives = 16/29 (55%), Gaps = 7/29 (24%)
Query: 20 EEAVDQLQASEKLIAE-------LNETWE 41
++A+ +LQAS KL A+ + T E
Sbjct: 19 KQALKKLQASLKLYADDSAPALAIKATME 47
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 28.2 bits (62), Expect = 2.6
Identities = 13/77 (16%), Positives = 28/77 (36%), Gaps = 17/77 (22%)
Query: 18 IAEEAVDQLQASEKLIAELNETWEEKLKRTEEIRIQREAVFAEMGVAVKEDGNTVGVFSP 77
IA+ D+L + I + E ++L+ + E + E
Sbjct: 74 IAQA--DRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKA--------------- 116
Query: 78 QKAVDDMTDLTTEKVSK 94
+K +++ +E+V K
Sbjct: 117 KKDLEEWNQRQSEQVEK 133
Score = 27.4 bits (60), Expect = 4.3
Identities = 12/47 (25%), Positives = 20/47 (42%), Gaps = 6/47 (12%)
Query: 19 AEEAVDQLQASEKLIAELNETW----EEKL-KRTEEIRIQREAVFAE 60
A V + + EK +L E W E++ K RI +A + +
Sbjct: 103 AASKVMEQEWREKAKKDLEE-WNQRQSEQVEKNKINNRIADKAFYQQ 148
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Length = 501
Score = 27.2 bits (61), Expect = 6.0
Identities = 6/60 (10%), Positives = 19/60 (31%), Gaps = 2/60 (3%)
Query: 33 IAELNETWEEKLKRTEEIRIQREAVFAEMGVAVK--EDGNTVGVFSPQKAVDDMTDLTTE 90
I + + ++ + ++EAV + V ++ Q ++ +
Sbjct: 72 IISTWQELRQLREQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARGREIRKQ 131
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.310 0.128 0.347
Gapped
Lambda K H
0.267 0.0757 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,909,557
Number of extensions: 230847
Number of successful extensions: 402
Number of sequences better than 10.0: 1
Number of HSP's gapped: 383
Number of HSP's successfully gapped: 49
Length of query: 275
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 183
Effective length of database: 4,133,061
Effective search space: 756350163
Effective search space used: 756350163
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 56 (25.3 bits)