RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7272
(275 letters)
>d1wlna1 b.26.1.2 (A:8-114) Afadin {Mouse (Mus musculus) [TaxId:
10090]}
Length = 107
Score = 109 bits (273), Expect = 5e-31
Identities = 40/108 (37%), Positives = 62/108 (57%), Gaps = 7/108 (6%)
Query: 140 TPHLVNLNEDPFMS--ECLIYYIKDGRTKVGSAESNLPQESQDIQLSGSHIKTEHCTFEN 197
P+LV L+ D S + +Y ++ T+VG+ + + IQL G I+ HC N
Sbjct: 4 LPYLVELSPDGSDSRDKPKLYRLQLSVTEVGTEKF----DDNSIQLFGPGIQPHHCDLTN 59
Query: 198 VEGVVTLIPFQE-ALCYVNGRQISEPTVLNTGSRVILGKNHVFRFNHP 244
++GVVT+ P A YV+G++ISE T+L +G R+ G +HVF+F P
Sbjct: 60 MDGVVTVTPRSMDAETYVDGQRISETTMLQSGMRLQFGTSHVFKFVDP 107
>d2g1la1 b.26.1.2 (A:498-599) Kinesin-like protein kif1c {Human
(Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 102 bits (256), Expect = 1e-28
Identities = 58/109 (53%), Positives = 76/109 (69%), Gaps = 12/109 (11%)
Query: 140 TPHLVNLNEDPFMSECLIYYIKDGRTKVGSAESNLPQESQDIQLSGSHIKTEHCTFENVE 199
TPHLVNLNEDP MSECL+Y+IKDG T+VG DI+L+G I+ +HC F ++
Sbjct: 1 TPHLVNLNEDPLMSECLLYHIKDGVTRVGQ-------VDMDIKLTGQFIREQHCLFRSIP 53
Query: 200 G-----VVTLIPFQEALCYVNGRQISEPTVLNTGSRVILGKNHVFRFNH 243
VVTL P + A YVNG+ ++EP VL +G+R+++GKNHVFRFNH
Sbjct: 54 QPDGEVVVTLEPCEGAETYVNGKLVTEPLVLKSGNRIVMGKNHVFRFNH 102
>d2zfia1 c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), kif1a
[TaxId: 10090]}
Length = 349
Score = 60.4 bits (145), Expect = 4e-11
Identities = 55/61 (90%), Positives = 57/61 (93%)
Query: 78 QKAVDDMTDLTTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALA 137
QK D T++TTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALA
Sbjct: 224 QKRHDAETNITTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALA 283
Query: 138 E 138
E
Sbjct: 284 E 284
>d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId: 9606]}
Length = 323
Score = 54.9 bits (131), Expect = 2e-09
Identities = 33/78 (42%), Positives = 45/78 (57%), Gaps = 6/78 (7%)
Query: 85 TDLTTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEITPHLV 144
T + K+ LVDLAGSE+ TGA+G L E NINKSL+ LG VISALAE + ++
Sbjct: 215 TQTEQKLSGKLYLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGSTYV- 273
Query: 145 NLNEDPFMSECLIYYIKD 162
P+ + ++D
Sbjct: 274 -----PYRDSKMTRILQD 286
>d2affa1 b.26.1.2 (A:3-100) Antigen ki-67 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 98
Score = 51.2 bits (122), Expect = 2e-09
Identities = 22/105 (20%), Positives = 34/105 (32%), Gaps = 10/105 (9%)
Query: 140 TPHLVNLNEDPFMSECLIYYIKDGRTKVGSAESNLPQESQDIQLSGSHIKTEHCTFENVE 199
T LV + + + + G DI++ + +HC E E
Sbjct: 2 TRRLVTIKRSG--VDGPHFPLSLSTCLFGRGIEC------DIRIQLPVVSKQHCKIEIHE 53
Query: 200 GVVTLIPFQEAL-CYVNGRQISEPTVLNTGSRVILGKNHVFRFNH 243
L F VNG I EP L G + + FR+ +
Sbjct: 54 QEAILHNFSSTNPTQVNGSVIDEPVRLKHGDVITIID-RSFRYEN 97
>d1v8ka_ c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c [TaxId:
10090]}
Length = 362
Score = 53.4 bits (127), Expect = 8e-09
Identities = 28/70 (40%), Positives = 36/70 (51%), Gaps = 7/70 (10%)
Query: 94 KISLVDLAGSERADSTGAKGTRLK-EGANINKSLTTLGKVISALAEITPHLVNLNEDPFM 152
K SLVDLAG+ER T + + + EGA INKSL L + I AL + H PF
Sbjct: 260 KFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHT------PFR 313
Query: 153 SECLIYYIKD 162
L ++D
Sbjct: 314 ESKLTQVLRD 323
>d1ry6a_ c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodium
falciparum) [TaxId: 5833]}
Length = 330
Score = 51.5 bits (122), Expect = 3e-08
Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 7/72 (9%)
Query: 92 VSKISLVDLAGSERADSTGAKG-TRLKEGANINKSLTTLGKVISALAEITPHLVNLNEDP 150
+ KI+ +DLAGSER T ++ +GANIN+SL L + I A+ H+ P
Sbjct: 229 LGKIAFIDLAGSERGADTVSQNKQTQTDGANINRSLLALKECIRAMDSDKNHI------P 282
Query: 151 FMSECLIYYIKD 162
F L ++D
Sbjct: 283 FRDSELTKVLRD 294
>d2ff4a3 b.26.1.2 (A:284-382) Probable regulatory protein EmbR,
C-terminal domain {Mycobacterium tuberculosis [TaxId:
1773]}
Length = 99
Score = 48.1 bits (114), Expect = 4e-08
Identities = 16/85 (18%), Positives = 31/85 (36%), Gaps = 8/85 (9%)
Query: 158 YYIKDGRTKVGSAESNLPQESQDIQLSGSHIKTEHCTFENVEGVVTLIPFQEA-LCYVNG 216
Y ++ T++G N DI L +++ H + + + + +V
Sbjct: 18 YPLQAAATRIGRLHDN------DIVLDSANVSRHHAVIVDTGTNYVINDLRSSNGVHVQH 71
Query: 217 RQISEPTVLNTGSRVILGKNHVFRF 241
+I LN G + + H F F
Sbjct: 72 ERIRSAVTLNDGDHIRICD-HEFTF 95
>d1f9va_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional)
{Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId:
4932]}
Length = 342
Score = 47.7 bits (112), Expect = 5e-07
Identities = 25/50 (50%), Positives = 32/50 (64%)
Query: 89 TEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAE 138
++LVDLAGSER + + G RL+E NINKSL+ LG VI AL +
Sbjct: 232 AHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQ 281
>d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]}
Length = 354
Score = 47.6 bits (112), Expect = 6e-07
Identities = 29/79 (36%), Positives = 42/79 (53%), Gaps = 5/79 (6%)
Query: 84 MTDLTTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEITPHL 143
+ + K ++ LVDLAGSE+ TGA G L+E INKSL+ LG VI+AL +
Sbjct: 219 NVETGSAKSGQLFLVDLAGSEKVGKTGASGQTLEEAKKINKSLSALGMVINALTDGKSSH 278
Query: 144 VNLNEDPFMSECLIYYIKD 162
V P+ L +++
Sbjct: 279 V-----PYRDSKLTRILQE 292
>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional)
{Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 368
Score = 47.2 bits (111), Expect = 8e-07
Identities = 22/52 (42%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Query: 91 KVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEITPH 142
V I+LVDLAG + TR+ E NIN+SL+ L VI AL + H
Sbjct: 270 SVGSINLVDLAG----SESPKTSTRMTETKNINRSLSELTNVILALLQKQDH 317
>d1x88a1 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), mitotic
kinesin eg5 [TaxId: 9606]}
Length = 345
Score = 43.8 bits (102), Expect = 1e-05
Identities = 33/74 (44%), Positives = 45/74 (60%), Gaps = 6/74 (8%)
Query: 89 TEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEITPHLVNLNE 148
K+ K++LVDLAGSE +GA R +E NIN+SL TLG+VI+AL E TPH+
Sbjct: 238 LVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHV----- 292
Query: 149 DPFMSECLIYYIKD 162
P+ L ++D
Sbjct: 293 -PYRESKLTRILQD 305
>d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato
(Solanum tuberosum) [TaxId: 4113]}
Length = 364
Score = 43.4 bits (101), Expect = 1e-05
Identities = 31/79 (39%), Positives = 42/79 (53%), Gaps = 6/79 (7%)
Query: 84 MTDLTTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEITPHL 143
K+S VDLAGSER +G+ G +LKE +INKSL+ LG VISAL+ H+
Sbjct: 213 NLQTQAIARGKLSFVDLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVISALSSGNQHI 272
Query: 144 VNLNEDPFMSECLIYYIKD 162
P+ + L + D
Sbjct: 273 ------PYRNHKLTMLMSD 285
>d2nn6e2 d.101.1.1 (E:192-285) Exosome complex exonuclease RRP42
{Human (Homo sapiens) [TaxId: 9606]}
Length = 94
Score = 27.5 bits (61), Expect = 0.55
Identities = 8/58 (13%), Positives = 25/58 (43%), Gaps = 3/58 (5%)
Query: 1 VVKNEDGNI---QTVAPASVIAEEAVDQLQASEKLIAELNETWEEKLKRTEEIRIQRE 55
V G + + V S+ E + ++ +++ L+ + + + + E + +R+
Sbjct: 37 VSVTSKGVVTCMRKVGKGSLDPESIFEMMETGKRVGKVLHASLQSVVHKEESLGPKRQ 94
>d1l5ia_ d.89.1.4 (A:) DNA-binding domain of REP protein
{Geminivirus (Tomato yellow leaf curl virus - sardinia)
[TaxId: 123735]}
Length = 118
Score = 27.4 bits (61), Expect = 0.92
Identities = 9/43 (20%), Positives = 14/43 (32%)
Query: 230 RVILGKNHVFRFNHPDQVRVHRENKKNASDKSESKKDKETDGD 272
+ F P + N + A S+ K + DGD
Sbjct: 64 KYNCTNQRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYIDKDGD 106
>d2nn6a2 d.101.1.1 (A:185-302) Exosome complex exonuclease RRP45
{Human (Homo sapiens) [TaxId: 9606]}
Length = 118
Score = 25.2 bits (55), Expect = 4.8
Identities = 8/60 (13%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
Query: 1 VVKNEDGNI---QTVAPASVIAEEAVDQLQASEKLIAELNETWEEKLKRTEEIRIQREAV 57
+ N+ I Q+ ++ ++ + + + +AE+ E + L+ +++R +
Sbjct: 39 IAMNKHREICTIQSSGGIMLLKDQVLRCSKIAGVKVAEITELILKALENDQKVRKEGGKF 98
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.310 0.128 0.347
Gapped
Lambda K H
0.267 0.0433 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 915,372
Number of extensions: 40015
Number of successful extensions: 103
Number of sequences better than 10.0: 1
Number of HSP's gapped: 95
Number of HSP's successfully gapped: 21
Length of query: 275
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 191
Effective length of database: 1,254,276
Effective search space: 239566716
Effective search space used: 239566716
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 52 (24.6 bits)