Query psy7273
Match_columns 413
No_of_seqs 166 out of 214
Neff 5.3
Searched_HMMs 46136
Date Fri Aug 16 22:29:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7273.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7273hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0241|consensus 100.0 1.8E-70 4E-75 583.1 19.7 369 22-403 643-1264(1714)
2 KOG0245|consensus 100.0 4.4E-52 9.6E-57 448.6 -7.0 379 22-411 651-1192(1221)
3 PF12473 DUF3694: Kinesin prot 100.0 2.6E-41 5.7E-46 300.9 15.1 127 239-374 14-140 (140)
4 PF11618 DUF3250: Protein of u 87.6 1.3 2.7E-05 38.4 5.4 51 182-238 1-51 (107)
5 PF12423 KIF1B: Kinesin protei 86.4 0.38 8.2E-06 35.2 1.3 25 94-118 9-34 (45)
6 PF00168 C2: C2 domain; Inter 84.4 7.4 0.00016 29.6 7.9 53 165-220 1-57 (85)
7 PF10562 CaM_bdg_C0: Calmoduli 79.0 1.3 2.8E-05 29.7 1.5 19 24-42 8-26 (29)
8 cd00276 C2B_Synaptotagmin C2 d 73.4 17 0.00037 30.8 7.4 57 164-225 15-77 (134)
9 cd08388 C2A_Synaptotagmin-4-11 68.5 16 0.00034 31.7 6.2 53 163-218 16-73 (128)
10 cd08385 C2A_Synaptotagmin-1-5- 62.8 35 0.00076 28.8 7.2 54 164-220 17-74 (124)
11 cd04036 C2_cPLA2 C2 domain pre 61.8 28 0.00061 29.2 6.4 53 165-220 2-58 (119)
12 cd08690 C2_Freud-1 C2 domain f 60.6 63 0.0014 29.6 8.8 89 166-257 5-104 (155)
13 cd04041 C2A_fungal C2 domain f 58.9 30 0.00064 28.9 6.0 54 164-220 2-60 (111)
14 cd04030 C2C_KIAA1228 C2 domain 58.5 36 0.00078 28.7 6.5 54 164-220 17-76 (127)
15 cd04032 C2_Perforin C2 domain 57.9 45 0.00097 29.3 7.1 52 162-219 27-81 (127)
16 cd08682 C2_Rab11-FIP_classI C2 52.9 33 0.00071 29.2 5.4 50 165-220 1-54 (126)
17 cd04011 C2B_Ferlin C2 domain s 52.7 65 0.0014 26.7 7.0 69 161-238 2-70 (111)
18 cd08391 C2A_C2C_Synaptotagmin_ 52.3 99 0.0022 25.5 8.1 50 165-220 3-62 (121)
19 cd08681 C2_fungal_Inn1p-like C 52.3 49 0.0011 27.5 6.3 52 164-220 2-57 (118)
20 cd08390 C2A_Synaptotagmin-15-1 51.7 45 0.00099 27.9 6.0 54 164-220 15-73 (123)
21 cd08387 C2A_Synaptotagmin-8 C2 50.4 75 0.0016 26.8 7.2 54 164-220 17-74 (124)
22 cd08406 C2B_Synaptotagmin-12 C 49.5 63 0.0014 28.6 6.7 67 164-238 16-88 (136)
23 cd08375 C2_Intersectin C2 doma 49.3 53 0.0011 28.9 6.2 51 164-220 16-70 (136)
24 cd04043 C2_Munc13_fungal C2 do 47.9 50 0.0011 27.8 5.7 54 164-220 2-59 (126)
25 cd08688 C2_KIAA0528-like C2 do 46.2 55 0.0012 27.2 5.6 49 166-220 2-56 (110)
26 cd04044 C2A_Tricalbin-like C2 45.2 86 0.0019 26.0 6.7 53 164-220 3-60 (124)
27 cd08378 C2B_MCTP_PRT_plant C2 45.0 60 0.0013 27.7 5.8 50 165-220 2-51 (121)
28 cd08680 C2_Kibra C2 domain fou 44.8 64 0.0014 28.1 5.9 53 165-220 16-75 (124)
29 cd08402 C2B_Synaptotagmin-1 C2 44.2 76 0.0017 27.3 6.4 54 164-220 16-75 (136)
30 cd08405 C2B_Synaptotagmin-7 C2 44.0 74 0.0016 27.4 6.3 54 164-220 16-75 (136)
31 PF13752 DUF4165: Domain of un 44.0 98 0.0021 27.7 6.9 44 242-286 36-79 (124)
32 PF00249 Myb_DNA-binding: Myb- 43.9 21 0.00046 25.7 2.3 29 24-52 3-31 (48)
33 PF10358 NT-C2: N-terminal C2 43.4 1.3E+02 0.0029 25.9 7.8 59 160-220 4-62 (143)
34 cd04050 C2B_Synaptotagmin-like 42.9 76 0.0016 26.1 5.9 50 165-220 2-55 (105)
35 cd08407 C2B_Synaptotagmin-13 C 40.8 1E+02 0.0022 27.4 6.8 66 165-238 17-90 (138)
36 cd08376 C2B_MCTP_PRT C2 domain 39.6 1.2E+02 0.0027 25.0 6.7 50 165-220 2-55 (116)
37 cd04037 C2E_Ferlin C2 domain f 39.5 84 0.0018 26.9 5.9 52 165-220 2-57 (124)
38 KOG2983|consensus 39.4 24 0.00053 35.6 2.7 45 182-251 7-51 (334)
39 cd08521 C2A_SLP C2 domain firs 38.7 81 0.0018 26.3 5.5 54 164-220 15-75 (123)
40 cd08384 C2B_Rabphilin_Doc2 C2 38.2 88 0.0019 26.7 5.8 54 164-220 14-73 (133)
41 cd04035 C2A_Rabphilin_Doc2 C2 38.0 80 0.0017 26.6 5.4 55 162-219 14-74 (123)
42 cd04009 C2B_Munc13-like C2 dom 36.4 99 0.0021 26.7 5.8 54 164-220 17-78 (133)
43 cd08395 C2C_Munc13 C2 domain t 35.4 85 0.0018 27.3 5.2 53 165-220 2-61 (120)
44 cd04024 C2A_Synaptotagmin-like 35.3 1.1E+02 0.0023 25.7 5.7 51 164-220 2-58 (128)
45 cd08382 C2_Smurf-like C2 domai 35.3 1.4E+02 0.003 25.4 6.5 51 165-220 2-56 (123)
46 cd08403 C2B_Synaptotagmin-3-5- 34.9 1.4E+02 0.003 25.7 6.5 54 164-220 15-74 (134)
47 cd08393 C2A_SLP-1_2 C2 domain 34.5 1.2E+02 0.0025 26.0 5.9 54 164-220 16-76 (125)
48 cd04029 C2A_SLP-4_5 C2 domain 33.6 1.3E+02 0.0027 25.9 6.0 54 164-220 16-76 (125)
49 cd08408 C2B_Synaptotagmin-14_1 33.6 1.4E+02 0.0031 26.3 6.5 67 164-238 16-89 (138)
50 cd04042 C2A_MCTP_PRT C2 domain 33.5 1.2E+02 0.0025 25.5 5.7 51 165-220 2-56 (121)
51 cd04018 C2C_Ferlin C2 domain t 33.2 96 0.0021 28.1 5.4 51 164-220 1-69 (151)
52 cd04040 C2D_Tricalbin-like C2 32.7 1.1E+02 0.0024 25.1 5.4 51 165-220 1-55 (115)
53 smart00717 SANT SANT SWI3, AD 32.7 41 0.0009 22.8 2.4 29 23-51 2-30 (49)
54 cd04025 C2B_RasA1_RasA4 C2 dom 32.6 1.1E+02 0.0024 25.7 5.4 50 165-220 2-55 (123)
55 cd08400 C2_Ras_p21A1 C2 domain 31.9 64 0.0014 27.7 3.9 27 164-190 5-32 (126)
56 cd08686 C2_ABR C2 domain in th 31.7 1.1E+02 0.0024 26.9 5.3 51 166-220 2-54 (118)
57 cd00030 C2 C2 domain. The C2 d 31.6 1.6E+02 0.0035 21.9 5.8 51 165-220 1-55 (102)
58 cd08383 C2A_RasGAP C2 domain ( 31.1 1.1E+02 0.0023 25.2 5.0 50 165-220 2-52 (117)
59 PF06068 TIP49: TIP49 C-termin 30.7 43 0.00093 35.4 3.0 25 61-85 66-90 (398)
60 cd08409 C2B_Synaptotagmin-15 C 30.7 1.8E+02 0.0039 25.3 6.6 54 164-220 16-74 (137)
61 cd04031 C2A_RIM1alpha C2 domai 30.5 2E+02 0.0044 23.9 6.7 53 164-219 17-75 (125)
62 cd00167 SANT 'SWI3, ADA2, N-Co 29.7 49 0.0011 22.1 2.3 27 24-50 1-27 (45)
63 cd08685 C2_RGS-like C2 domain 29.4 1.5E+02 0.0032 25.3 5.7 54 164-220 13-71 (119)
64 cd08386 C2A_Synaptotagmin-7 C2 28.8 1.6E+02 0.0036 24.6 5.9 54 163-219 16-73 (125)
65 cd08381 C2B_PI3K_class_II C2 d 28.1 1.7E+02 0.0036 25.0 5.8 54 164-220 14-72 (122)
66 cd00275 C2_PLC_like C2 domain 28.0 1.4E+02 0.003 24.9 5.3 56 163-220 2-66 (128)
67 cd08404 C2B_Synaptotagmin-4 C2 27.8 1.4E+02 0.0031 25.6 5.4 54 164-220 16-75 (136)
68 cd04020 C2B_SLP_1-2-3-4 C2 dom 26.2 2.3E+02 0.0049 25.7 6.6 55 163-220 27-87 (162)
69 cd04051 C2_SRC2_like C2 domain 25.8 1.4E+02 0.003 25.1 4.9 53 164-220 1-57 (125)
70 cd04039 C2_PSD C2 domain prese 25.8 1.9E+02 0.0041 24.3 5.6 50 165-220 3-60 (108)
71 cd04022 C2A_MCTP_PRT_plant C2 25.2 1.5E+02 0.0032 25.2 4.9 50 165-220 2-55 (127)
72 cd08676 C2A_Munc13-like C2 dom 24.2 2.8E+02 0.006 25.2 6.8 30 161-190 26-59 (153)
73 cd04017 C2D_Ferlin C2 domain f 23.7 1.7E+02 0.0036 25.3 5.1 50 164-219 2-55 (135)
74 cd08392 C2A_SLP-3 C2 domain fi 23.5 2.2E+02 0.0047 24.7 5.7 54 164-220 16-76 (128)
75 cd08678 C2_C21orf25-like C2 do 23.2 4.6E+02 0.0099 22.1 9.0 61 166-238 2-64 (126)
76 cd04010 C2B_RasA3 C2 domain se 21.8 2.2E+02 0.0049 25.5 5.6 53 165-220 2-58 (148)
77 cd08410 C2B_Synaptotagmin-17 C 21.8 2.4E+02 0.0053 24.4 5.7 54 164-220 15-74 (135)
78 cd04019 C2C_MCTP_PRT_plant C2 21.3 2.4E+02 0.0053 25.2 5.8 51 165-220 2-56 (150)
79 PF05688 DUF824: Salmonella re 21.3 1.3E+02 0.0027 22.5 3.2 25 157-181 9-33 (47)
No 1
>KOG0241|consensus
Probab=100.00 E-value=1.8e-70 Score=583.07 Aligned_cols=369 Identities=21% Similarity=0.341 Sum_probs=291.1
Q ss_pred cCCCcHHHHHHHHHHHHhcccccccchHHHHHhhcccHHHHHHHHHHhcccccE-EEEecCC--cc---------c-cee
Q psy7273 22 ECTWTEREFALAAWAFRKWKYHQFTSLRDDLWGNAIFLKEANAISVELKKKTRS-VMVTAGE--VI---------V-PSV 88 (413)
Q Consensus 22 ~~~wt~~e~~lar~~~~kWk~~~~~sLrE~l~~na~lvKEAN~IS~EL~K~VqF-vll~~p~--L~---------~-P~i 88 (413)
...|.+++.+++|.++. +|||||++++.||+|||+||+||+|++.| |+|++|+ |. + |+|
T Consensus 643 ~~~WAeerdemf~~SL~--------rLr~~iv~AN~LVrEAN~laeEm~KkT~y~VTLQIPaanL~~nrkrGa~vsEPaI 714 (1714)
T KOG0241|consen 643 VTQWAEERDEMFRQSLA--------RLREQIVKANTLVREANFLAEEMSKKTDYQVTLQIPAANLSANRKRGAFVSEPAI 714 (1714)
T ss_pred HHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHhhccceeEEEEcchhcCCcccccCceecccee
Confidence 34799999999999999 59999999999999999999999999999 9999975 22 2 887
Q ss_pred -EE----------Eec--------cchhhhcccCCCCC-CCCCCCCCCCC-----CC--cceee----------------
Q psy7273 89 -LT----------SRK--------RSLLHTSAPALSCS-SELPCYKPSEY-----PP--NTRTY---------------- 125 (413)
Q Consensus 89 -Vr----------lrq--------RemY~~~~~~~p~~-~~~f~~e~p~y-----~~--Gv~~~---------------- 125 (413)
|| ++| |+|||.|++++|+. ..+++.-||+| +. ||||.
T Consensus 715 ~VrR~g~gsQiWt~ekLenkLiDMRd~Yqe~ke~~~~~~~~~~k~~DPFyesQEnhnLiGVANvFLE~LF~DvkL~Y~vP 794 (1714)
T KOG0241|consen 715 QVRRKGKGSQIWTIEKLENKLIDMRDLYQEWKEKVPPAKRLYGKRGDPFYESQENHNLIGVANVFLEVLFHDVKLQYAVP 794 (1714)
T ss_pred EEEecCCCceeeeHHHhHhHHhhHHHHHHHHHhcCCchhhhccccCCccccccccccchhhHHHHHHHHHhhheeccccc
Confidence 76 222 99999999977764 33344445555 33 99952
Q ss_pred eecCCeeee------CCCCCCCC---CccCCCCCCCCCCCCCCCCeEEEEEEEEeecCCCCCCCe-eEEEeeeCCCcccc
Q psy7273 126 SASSNSECD------GDSGRGDS---SICSDVKEEEPPPHLSPGTELQFRITVLQAVGISTEYSD-IFCQFNFLHRHDEA 195 (413)
Q Consensus 126 ~~~~~Gev~------v~~~~~~~---~~~~~~~~~~~p~~l~~g~~ltf~V~I~~a~Glp~~~s~-VfcQy~f~~~~e~~ 195 (413)
+|+|+|||+ +-...|+- ....++-.+...+..+.+++|||||+|++|+|||..+|+ |||||+||++.|.+
T Consensus 795 IIsQqGEVAGRLhVev~Rv~gq~~~~~~ggdev~e~~~~~~~~~~~ltCrVkIk~AtGLP~~LSnFVFCqYtFw~~~E~~ 874 (1714)
T KOG0241|consen 795 IISQQGEVAGRLHVEVMRVTGQVPERVVGGDEVVESSGEIIHRVKKLTCRVKIKEATGLPLNLSNFVFCQYTFWDQQEST 874 (1714)
T ss_pred eecccccccceeEEEEEEeccccchhhccccccccCCCccccccceEEEEEEEeeccCCcccccceEEEEeeecccccce
Confidence 799999994 11111110 111111112223345778999999999999999999999 99999999999976
Q ss_pred eecCccc----CCCCCcceEEeEEEEEEEecCHhHHHHhhcCCEEEe---------------------------------
Q psy7273 196 FSTEPVK----NTGKGTPLGFYHIQNITVPVSKSFIEYLKTQPLVFE--------------------------------- 238 (413)
Q Consensus 196 ~st~p~~----~~~~~~~~~F~h~~~~~v~vTe~fi~~l~~~~l~iE--------------------------------- 238 (413)
...+.++ +.....++.|+||++|+|+|||+|+||+++|+|+||
T Consensus 875 vvaP~vd~ss~~~~~~~~v~FeH~~df~V~vtEeFlE~~~dgALaIEVwGHr~~g~~~~iwe~d~~qaKtrsL~dRW~Ev 954 (1714)
T KOG0241|consen 875 VVAPVVDPSSQSKDAQYTVIFEHCKDFVVNVTEEFLEHISDGALAIEVWGHRIAGNGSSIWEVDSLQAKTRSLHDRWNEV 954 (1714)
T ss_pred eeeeccccccccCCCCeEEEeecccceEEeehHHHHHHhhcCceEEEEeeccccCCCcccccchhhhhhhhHHHHHHHHH
Confidence 5432222 344578999999999999999999999999999999
Q ss_pred -------------------------------eceEEEEecCceeeEEE--EEEeccCC-ceeeeeeeEEEecee--e---
Q psy7273 239 -------------------------------CRGLFLLHQGIQRRIRL--TIVHEQVP-EIRWKDVKELVVGRI--R--- 279 (413)
Q Consensus 239 -------------------------------~~G~FqLhQGlQRRI~V--tl~h~sG~-~L~w~~i~~l~vG~v--R--- 279 (413)
+||+||||||+|||++| +++|.||+ ||..+.|.+|.|||| |
T Consensus 955 tRriE~Wvei~ElNenGey~~VEv~~a~dV~TGGI~QLrQGq~RRv~V~Vk~vq~sGtLPl~~e~I~sVsIG~v~~r~tr 1034 (1714)
T KOG0241|consen 955 TRRIEMWVEILELNENGEYAPVEVHQAKDVNTGGIFQLRQGQSRRVQVTVKPVQHSGTLPLMVECILSVSIGCVTARSTR 1034 (1714)
T ss_pred HHHHHHHHHHHHhccCCCcceeEEeecccccccceeEeccCceeEEEEEEeeccCCCccceehhhhheeeeeeEEeeecc
Confidence 99999999999999998 77999998 999999999999999 3
Q ss_pred c---------------------------------------CCCCCCCC-CCCcce----EEe----------------cc
Q psy7273 280 N---------------------------------------TPEPEMDE-DTDSSV----LSL----------------GL 299 (413)
Q Consensus 280 ~---------------------------------------~~~~~~~~-~~~~~~----l~L----------------~~ 299 (413)
+ +.++.+++ +++.++ |.| |+
T Consensus 1035 ~~r~~dsyqeeDL~~lR~kWs~AL~kR~~YLdqQiq~l~~K~~KtE~d~eRE~~L~~qwv~LTEERnAV~vPapgSgIPG 1114 (1714)
T KOG0241|consen 1035 LQRGLDSYQEEDLNCLREKWSDALIKRREYLDQQIQKLSNKTEKTEDDVEREAQLVEQWVGLTEERNAVLVPAPGSGIPG 1114 (1714)
T ss_pred CcCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhhhhhhcceeeccCCCCCCCC
Confidence 1 23444443 555533 333 77
Q ss_pred cCCCceecCC--------------CC------------------------------------CeEEEEEEEecCCCCCcc
Q psy7273 300 FVGEYLEIPG--------------ED------------------------------------RSMFRFEAAWDSSLHNSP 329 (413)
Q Consensus 300 ~~~~~~~~~~--------------d~------------------------------------~~~~~~~a~WDSS~H~s~ 329 (413)
+|+.|++++| || .+.+.++|+||||+|+|+
T Consensus 1115 APadW~pp~GmE~HiPVlFLdLN~DD~s~q~t~dep~~aG~~s~L~~E~~~~f~~l~I~k~~D~ev~a~aSWDSsvHd~~ 1194 (1714)
T KOG0241|consen 1115 APADWIPPPGMETHIPVLFLDLNADDLSAQETLDEPHAAGVNSILPKEHGSQFFYLPIIKHSDKEVSATASWDSSVHDSP 1194 (1714)
T ss_pred CCccccCCCCCcccCceEEEecCCCccccccccCCcccccccccccCCcCCceEEEEeEeccCCceeEEeeccccccCch
Confidence 7888988887 22 344679999999999999
Q ss_pred ccccccCCCCEEEEEEEEEEEecC-cCcceEEEEeeeEEEeccCCcCcchhhhhhhccccccccccceeeEEEEE
Q psy7273 330 LLNRISAHGEQIFMTISAYLELEN-CGQPGIITKDLSLVIYGRDARTAPRTLKHLFSSSYKNNEANRLTGVYEMA 403 (413)
Q Consensus 330 lLNRvT~~~~rV~~tl~~~v~~~~-~~~Pv~f~kdi~v~I~~R~~~~~~~~~~~l~~~~~r~~~~~~~sgvf~v~ 403 (413)
.|||+|+.++|||++|+.+|+++| |+|.++++|+||++||+++++ +.++++. .+| .-+ +.++.-.|+|.
T Consensus 1195 aLnr~T~~neRvylIvk~tV~LSHPa~M~lVLRKRi~~ni~~kqs~-t~~l~kk-m~~-~~~--i~~~gvtyeiV 1264 (1714)
T KOG0241|consen 1195 ALNRVTPQNERVYLIVKTTVQLSHPAPMELVLRKRICANIYKKQSF-TQSLKKK-MSG-KNI--IYSCGVTYEIV 1264 (1714)
T ss_pred hhcCCCCCCceEEEEEEEEeeecCCCcHHHHHHHHHhhhhhcCccH-HHHHHHH-hcc-ccc--ccccceEEehh
Confidence 999999999999999999999999 999999999999999999999 4565555 443 333 44555666664
No 2
>KOG0245|consensus
Probab=100.00 E-value=4.4e-52 Score=448.63 Aligned_cols=379 Identities=44% Similarity=0.672 Sum_probs=318.3
Q ss_pred cCCCcHHHHHHHHHHHHhcccccccchHHHHHhhcccHHHHHHHHHHhcccccE--EEEec-------CCccccee----
Q psy7273 22 ECTWTEREFALAAWAFRKWKYHQFTSLRDDLWGNAIFLKEANAISVELKKKTRS--VMVTA-------GEVIVPSV---- 88 (413)
Q Consensus 22 ~~~wt~~e~~lar~~~~kWk~~~~~sLrE~l~~na~lvKEAN~IS~EL~K~VqF--vll~~-------p~L~~P~i---- 88 (413)
+++||.++.+|+.|+++|||+|+|+++||++|++++++++||+|+.|++|+|+| +++++ ++|+ |.+
T Consensus 651 ~~~~~~~~~~~~~~~~~k~k~~~~~s~~~~~~~~~~~l~~~~a~~~e~~k~v~~e~al~td~q~~~~~~ell-~t~i~~~ 729 (1221)
T KOG0245|consen 651 EVQWTVKECELALWAKRKAKRHQEQSLRDLLEGNAIFLAAAAALEVELKKKVRFEEALLTDTQKSMKEEELL-PTEILVN 729 (1221)
T ss_pred hhhhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhccchhhhhhhcccccccccccccc-chhhhhh
Confidence 789999999999999999999999999999999999999999999999999988 88876 3444 522
Q ss_pred EE-----------Eec----cchhhhcccCCCC-CCCCCC----CCCCCCCC-------c-ce-----ee---------e
Q psy7273 89 LT-----------SRK----RSLLHTSAPALSC-SSELPC----YKPSEYPP-------N-TR-----TY---------S 126 (413)
Q Consensus 89 Vr-----------lrq----RemY~~~~~~~p~-~~~~f~----~e~p~y~~-------G-v~-----~~---------~ 126 (413)
|+ ..+ |+||....+ ++. +...+. -.+|+|.. | +. .| +
T Consensus 730 v~d~~~~~t~~w~~ekl~~~R~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~l~~l~~~~~l~~~~~~ 808 (1221)
T KOG0245|consen 730 VSDKSDGATHLWSKEKLDMIRELGEQEAE-MATSDGDESEDIATGSDPFYERRHWFKLLGILVRLSSLAYPVPLIAKKAI 808 (1221)
T ss_pred ccccccchHHHHHHHHHHHHHHhchhhhh-hcccCCCccccccccCCccccchhHHHHHHHHHHHHhcccchhHHHhhhh
Confidence 32 011 888888776 333 232221 13577742 3 11 11 2
Q ss_pred ----ecCCeeeeC--CCCCC-----C----CCccCCCC---CCCCCCCCCCCCeEEEEEEEEeecCCCCCCCeeEEEeee
Q psy7273 127 ----ASSNSECDG--DSGRG-----D----SSICSDVK---EEEPPPHLSPGTELQFRITVLQAVGISTEYSDIFCQFNF 188 (413)
Q Consensus 127 ----~~~~Gev~v--~~~~~-----~----~~~~~~~~---~~~~p~~l~~g~~ltf~V~I~~a~Glp~~~s~VfcQy~f 188 (413)
+..+|.+.+ .++.. | ......+. .+..++++..|..++|++++++|.+++.++.++||||+|
T Consensus 809 ~~~~g~~kg~lt~~~~~~~~d~e~~d~e~~~~~~~~~~~~~vs~~~~~~~~~~~~~~~~s~~~a~~~~~~~~~~~~~~~f 888 (1221)
T KOG0245|consen 809 VELQGQEKGMLTVAVQPVEADDEELDYEELRIVHGQGAAEEVSAILEDLQSGLSFTFRVSVIEAVDIAMEDLDSNCQERF 888 (1221)
T ss_pred hhhhccccceeeeeccccccCCcccchhhhccccccCchhhccccccccccCCCcccchhhhhhccchhhhhhcccchhh
Confidence 333444432 22221 1 00000111 124468899999999999999999999999999999999
Q ss_pred CCCcccceecCcccCCCCCcceEEeEEEEEEEecCHhHHHHhhcCCEEEe------------------------------
Q psy7273 189 LHRHDEAFSTEPVKNTGKGTPLGFYHIQNITVPVSKSFIEYLKTQPLVFE------------------------------ 238 (413)
Q Consensus 189 ~~~~e~~~st~p~~~~~~~~~~~F~h~~~~~v~vTe~fi~~l~~~~l~iE------------------------------ 238 (413)
++++++.|+++|+.|.+.+++..|+|+++|.+.+++.++.|+.+.+..||
T Consensus 889 l~~~~~~~s~~~l~~~g~~~~~~~~h~~~~~~~~~~~~~~~~~s~~~~~eq~~~~q~~~~~~~~~~~~~~~~~~~~~~~~ 968 (1221)
T KOG0245|consen 889 LHRKDEALSGTPLQNSGRGGPGVRYHVTNFAVKIDKSEVFYFKSNPQHFEQFGHYQSGQQPSPLSPQELVSPTRCSRERR 968 (1221)
T ss_pred ccccccccccCccccCCCCCCcccccccccccccccchhhhhccCcceeeeccccccccccCCccchhcccccccchhcc
Confidence 99999999999999898999999999999999999999999999999999
Q ss_pred -----------------------------------------------------------eceEEEEecCceeeEEEEEEe
Q psy7273 239 -----------------------------------------------------------CRGLFLLHQGIQRRIRLTIVH 259 (413)
Q Consensus 239 -----------------------------------------------------------~~G~FqLhQGlQRRI~Vtl~h 259 (413)
+.|+|.||||+||||.+++-|
T Consensus 969 ~~~~~~s~~~~~~~l~~~~~~~~~~~k~l~~~L~~fe~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~q~~q~~~~~~~~~ 1048 (1221)
T KOG0245|consen 969 PPSMPRSKPVRATSLAKLSANRNGSVKSLETLLQWFEICEHEATPQYIQKAVDQAIQLPRQGVKLLHQGAQRRISVTILH 1048 (1221)
T ss_pred CCCccccccccchHHHhhhhhccchhhcchhhHHHhhhhhhhccchhhhHHHhhccccccccccchhhhheeehhhhhhc
Confidence 889999999999999999999
Q ss_pred ccCCceeeeeeeEEEeceeecCCCCCCCCCCCcceEEecccCCCceecCCCCCeEEEEEEEecCCCCCccccccccCCCC
Q psy7273 260 EQVPEIRWKDVKELVVGRIRNTPEPEMDEDTDSSVLSLGLFVGEYLEIPGEDRSMFRFEAAWDSSLHNSPLLNRISAHGE 339 (413)
Q Consensus 260 ~sG~~L~w~~i~~l~vG~vR~~~~~~~~~~~~~~~l~L~~~~~~~~~~~~d~~~~~~~~a~WDSS~H~s~lLNRvT~~~~ 339 (413)
+ |.+|.|++|.++++|+||+.++ + --|+ +++|+++++++++..+|++.+|.++|+||||+|++.+|||+|+++.
T Consensus 1049 E-~~~~~~~~vre~v~~~i~~~~~-~---~~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~s~~~~~~~~~~~~~~~ 1122 (1221)
T KOG0245|consen 1049 E-GGELKWKDVRELVMGRIRNGPE-D---LYDP-ILSLNILSAEFPEGSHDDRTFFQMEAAWDSSLHNSELLNAVSPYKE 1122 (1221)
T ss_pred c-ccchhHHHHHHHHhhhhhcCcc-c---chhH-HHhcCcchhhhcccccccchhhhhhhhhhhhhhhhhhhhccCcchh
Confidence 9 7799999999999999999877 2 2334 7799999999999999999999999999999999999999999999
Q ss_pred EEEEEEEEEEEecCcCcceEEEEeeeEEEeccCCc-CcchhhhhhhccccccccccceeeEEEEEEEeccCCC
Q psy7273 340 QIFMTISAYLELENCGQPGIITKDLSLVIYGRDAR-TAPRTLKHLFSSSYKNNEANRLTGVYEMALKRANEAG 411 (413)
Q Consensus 340 rV~~tl~~~v~~~~~~~Pv~f~kdi~v~I~~R~~~-~~~~~~~~l~~~~~r~~~~~~~sgvf~v~l~~~~~~~ 411 (413)
.||||++.+.++++|.+|++..||.|+-+|.|+++ +.+|+++++++ +..+.||++|||++.++..++.|
T Consensus 1123 ~i~~~~s~~~El~~c~~~~~~ak~~~~~~~~re~~is~~~~~k~~~~---~~~~~~rv~~v~~~~~~~~s~~~ 1192 (1221)
T KOG0245|consen 1123 KIYMTLSAYRELDLCMQPAVVAKDFCLLFYSREAKISASRSLKSLFG---LSPESNRVTGVYELSLCDCSDYG 1192 (1221)
T ss_pred HHHHHHHHHHHHHhhhhhhhcccchheeehhhhhccCccHHHHHhhc---cchHhhhccchhhhhcccCCCcc
Confidence 99999999999999999999999999999999998 78889999987 55678999999999999988865
No 3
>PF12473 DUF3694: Kinesin protein ; InterPro: IPR022164 This domain family is found in eukaryotes, and is typically between 131 and 151 amino acids in length. The family is found in association with PF00225 from PFAM, PF00498 from PFAM. There is a single completely conserved residue W that may be functionally important.
Probab=100.00 E-value=2.6e-41 Score=300.87 Aligned_cols=127 Identities=40% Similarity=0.712 Sum_probs=116.1
Q ss_pred eceEEEEecCceeeEEEEEEeccCCceeeeeeeEEEeceeecCCCCCCCCCCCcceEEecccCCCceecCCCCCeEEEEE
Q psy7273 239 CRGLFLLHQGIQRRIRLTIVHEQVPEIRWKDVKELVVGRIRNTPEPEMDEDTDSSVLSLGLFVGEYLEIPGEDRSMFRFE 318 (413)
Q Consensus 239 ~~G~FqLhQGlQRRI~Vtl~h~sG~~L~w~~i~~l~vG~vR~~~~~~~~~~~~~~~l~L~~~~~~~~~~~~d~~~~~~~~ 318 (413)
|+|+||||||+||||+|++.|++|..|+|++|++|+||+||++++ +.. ....++|++++.++ ||+++|+++
T Consensus 14 ~~g~F~LrqG~qRrI~v~l~~~sg~~l~~e~~~~v~vg~vR~~~~--~~~--~~~~~~l~~~~~~~-----~~~~~~~~~ 84 (140)
T PF12473_consen 14 DGGIFQLRQGLQRRIQVTLKHESGSQLPWERCFGVLVGRVRLVDD--MHL--LDMVVSLPLISGPY-----DGTSSYSIE 84 (140)
T ss_pred cCCcEeeeCCEeeeEEEEEEEeCCCCcceeeEeeeeecceEeccc--ccc--cceeeccccccccC-----CCccEEEEE
Confidence 569999999999999999999999999999999999999999843 442 22367788877655 889999999
Q ss_pred EEecCCCCCccccccccCCCCEEEEEEEEEEEecCcCcceEEEEeeeEEEeccCCc
Q psy7273 319 AAWDSSLHNSPLLNRISAHGEQIFMTISAYLELENCGQPGIITKDLSLVIYGRDAR 374 (413)
Q Consensus 319 a~WDSS~H~s~lLNRvT~~~~rV~~tl~~~v~~~~~~~Pv~f~kdi~v~I~~R~~~ 374 (413)
|+||||+|+|.+|||+|++++||||||+|+|++++|+|||+|+||+||+||+|+++
T Consensus 85 ~~WDss~h~s~~LNr~T~~~~rV~~tv~~~v~~~~~~ePv~f~~di~v~I~~r~~~ 140 (140)
T PF12473_consen 85 ASWDSSLHNSLLLNRVTPKGERVYMTVAVDVVISHCQEPVRFRKDICVRIYPRDEF 140 (140)
T ss_pred EeecccCCcHHHcCCCCCCCCEEEEEEEEEEEeCCCCCceEEEEEEEEEEeCCCCC
Confidence 99999999999999999999999999999999999999999999999999999974
No 4
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=87.56 E-value=1.3 Score=38.35 Aligned_cols=51 Identities=27% Similarity=0.569 Sum_probs=30.1
Q ss_pred eEEEeeeCCCcccceecCcccCCCCCcceEEeEEEEEEEecCHhHHHHhhcCCEEEe
Q psy7273 182 IFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNITVPVSKSFIEYLKTQPLVFE 238 (413)
Q Consensus 182 VfcQy~f~~~~e~~~st~p~~~~~~~~~~~F~h~~~~~v~vTe~fi~~l~~~~l~iE 238 (413)
+||=|.|++ .| .-+| |+- .+....|+.+-.+.|.+..-|+.||..+.+.||
T Consensus 1 tFct~dFyd-fE-tq~T-pvv---~G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lE 51 (107)
T PF11618_consen 1 TFCTYDFYD-FE-TQTT-PVV---RGLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLE 51 (107)
T ss_dssp EEEEE-STT-----EE----E---ESSS----EEEEEEE--SHHHHHHHHH--EEEE
T ss_pred CEEEEEeec-ee-eecc-cce---eCCCccceeEEEEEEEcCHHHHHHhhcCCEEEE
Confidence 699999994 34 3344 443 135778899999999999999999999999988
No 5
>PF12423 KIF1B: Kinesin protein 1B; InterPro: IPR022140 This domain family is found in eukaryotes, and is approximately 50 amino acids in length. The family is found in association with PF00225 from PFAM, PF00498 from PFAM. KIF1B is an anterograde motor for transport of mitochondria in axons of neuronal cells.
Probab=86.35 E-value=0.38 Score=35.17 Aligned_cols=25 Identities=8% Similarity=-0.019 Sum_probs=16.3
Q ss_pred cchhhhccc-CCCCCCCCCCCCCCCC
Q psy7273 94 RSLLHTSAP-ALSCSSELPCYKPSEY 118 (413)
Q Consensus 94 RemY~~~~~-~~p~~~~~f~~e~p~y 118 (413)
|||||++.+ ..|.+.++++.+||+|
T Consensus 9 RemYq~~~~~~~~~~~~~~~~~DPF~ 34 (45)
T PF12423_consen 9 REMYQQYKENDFPEYDQHFKEDDPFY 34 (45)
T ss_pred HHHHHHHHhcCCccccccCCCCCCCC
Confidence 999999932 1356555666566665
No 6
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=84.44 E-value=7.4 Score=29.59 Aligned_cols=53 Identities=13% Similarity=0.203 Sum_probs=39.6
Q ss_pred EEEEEEeecCCCC-C---CCeeEEEeeeCCCcccceecCcccCCCCCcceEEeEEEEEEE
Q psy7273 165 FRITVLQAVGIST-E---YSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNITV 220 (413)
Q Consensus 165 f~V~I~~a~Glp~-~---~s~VfcQy~f~~~~e~~~st~p~~~~~~~~~~~F~h~~~~~v 220 (413)
.+|+|.+|.||+. + ..+.||.+.+.+.....+.|....++ ....|+.+..|.+
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~---~~P~w~e~~~~~~ 57 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNT---SNPVWNEEFEFPL 57 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSB---SSEEEEEEEEEEE
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeecc---ccceeeeeeeeee
Confidence 3689999999994 4 34599999998755556777665543 5889997777775
No 7
>PF10562 CaM_bdg_C0: Calmodulin-binding domain C0 of NMDA receptor NR1 subunit; InterPro: IPR018882 This is a very short highly conserved domain that is C-terminal to the cytosolic transmembrane region IV of the NMDA-receptor 1. It has been shown to bind Calmodulin-Calcium with high affinity. The ionotropic N-methyl-D-aspartate receptor (NMDAR) is a major source of calcium flux into neurons in the brain and plays a critical role in learning, memory, neural development, and synaptic plasticity. Calmodulin (CaM) regulates NMDARs by binding tightly to the C0 and C1 regions of their NR1 subunit. The conserved tryptophan is considered to be the anchor residue [].
Probab=79.00 E-value=1.3 Score=29.73 Aligned_cols=19 Identities=26% Similarity=0.473 Sum_probs=16.7
Q ss_pred CCcHHHHHHHHHHHHhccc
Q psy7273 24 TWTEREFALAAWAFRKWKY 42 (413)
Q Consensus 24 ~wt~~e~~lar~~~~kWk~ 42 (413)
.|-+++.+|||.|.+|||.
T Consensus 8 ~~kqk~~elAr~a~dkWR~ 26 (29)
T PF10562_consen 8 IRKQKQLELARHAADKWRG 26 (29)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3668899999999999985
No 8
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=73.42 E-value=17 Score=30.84 Aligned_cols=57 Identities=18% Similarity=0.233 Sum_probs=38.4
Q ss_pred EEEEEEEeecCCC-CC---CCeeEEEeeeCCCcccc--eecCcccCCCCCcceEEeEEEEEEEecCHh
Q psy7273 164 QFRITVLQAVGIS-TE---YSDIFCQFNFLHRHDEA--FSTEPVKNTGKGTPLGFYHIQNITVPVSKS 225 (413)
Q Consensus 164 tf~V~I~~a~Glp-~~---~s~VfcQy~f~~~~e~~--~st~p~~~~~~~~~~~F~h~~~~~v~vTe~ 225 (413)
++.|+|.+|.+|+ .+ .+|.||...+....... ..|..+.+ .....|+.+..|.+ +..
T Consensus 15 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~---~~~P~wne~f~f~i--~~~ 77 (134)
T cd00276 15 RLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKG---TLNPVFNEAFSFDV--PAE 77 (134)
T ss_pred EEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceec---CCCCeeeeeEEEEC--CHH
Confidence 5789999999999 33 56799999887544332 35555442 24778887766654 543
No 9
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=68.52 E-value=16 Score=31.70 Aligned_cols=53 Identities=9% Similarity=0.238 Sum_probs=38.0
Q ss_pred EEEEEEEEeecCCCC-C----CCeeEEEeeeCCCcccceecCcccCCCCCcceEEeEEEEE
Q psy7273 163 LQFRITVLQAVGIST-E----YSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNI 218 (413)
Q Consensus 163 ltf~V~I~~a~Glp~-~----~s~VfcQy~f~~~~e~~~st~p~~~~~~~~~~~F~h~~~~ 218 (413)
-++.|+|.+|.+||. + .+|.||...+........-|..++++ ....|+.+..|
T Consensus 16 ~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t---~nP~wnE~F~f 73 (128)
T cd08388 16 KALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKT---RNPVYDETFTF 73 (128)
T ss_pred CEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCC---CCCceeeEEEE
Confidence 468899999999993 3 34799999887544445566555432 47788877776
No 10
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=62.82 E-value=35 Score=28.77 Aligned_cols=54 Identities=19% Similarity=0.290 Sum_probs=37.7
Q ss_pred EEEEEEEeecCCC-CC---CCeeEEEeeeCCCcccceecCcccCCCCCcceEEeEEEEEEE
Q psy7273 164 QFRITVLQAVGIS-TE---YSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNITV 220 (413)
Q Consensus 164 tf~V~I~~a~Glp-~~---~s~VfcQy~f~~~~e~~~st~p~~~~~~~~~~~F~h~~~~~v 220 (413)
++.|+|.+|.||+ .+ .+|.||...+.......+.|...++ .....|+.+..|.+
T Consensus 17 ~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~---t~nP~wne~f~f~i 74 (124)
T cd08385 17 QLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRK---TLNPVFNETFTFKV 74 (124)
T ss_pred EEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcC---CCCCceeeeEEEeC
Confidence 5789999999998 33 4578999887654334566655442 24678888777665
No 11
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=61.81 E-value=28 Score=29.24 Aligned_cols=53 Identities=19% Similarity=0.293 Sum_probs=37.4
Q ss_pred EEEEEEeecCCC-CC---CCeeEEEeeeCCCcccceecCcccCCCCCcceEEeEEEEEEE
Q psy7273 165 FRITVLQAVGIS-TE---YSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNITV 220 (413)
Q Consensus 165 f~V~I~~a~Glp-~~---~s~VfcQy~f~~~~e~~~st~p~~~~~~~~~~~F~h~~~~~v 220 (413)
+.|+|.+|.+|| .+ .+|-||...+.+.......|..+.++ ....|+.+..|.+
T Consensus 2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t---~nP~Wne~f~f~i 58 (119)
T cd04036 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNS---INPVWNETFEFRI 58 (119)
T ss_pred eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCC---CCCccceEEEEEe
Confidence 579999999999 43 45699999886544445566555532 4777887777766
No 12
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=60.60 E-value=63 Score=29.57 Aligned_cols=89 Identities=19% Similarity=0.387 Sum_probs=55.3
Q ss_pred EEEEEeecC--CCCC----CCeeEEEeeeCCCcc--cceecCcccCCCCCcceEEeEEEEEEEecC-HhHHHHhhcCCEE
Q psy7273 166 RITVLQAVG--ISTE----YSDIFCQFNFLHRHD--EAFSTEPVKNTGKGTPLGFYHIQNITVPVS-KSFIEYLKTQPLV 236 (413)
Q Consensus 166 ~V~I~~a~G--lp~~----~s~VfcQy~f~~~~e--~~~st~p~~~~~~~~~~~F~h~~~~~v~vT-e~fi~~l~~~~l~ 236 (413)
.++|..+.| ||.. .+|.|+.|.|....+ ..+-|..++++ ....|+....|.|+-. ..|...+...+|.
T Consensus 5 el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~T---lnPvfNE~f~f~I~~~~~~~~R~l~~~~L~ 81 (155)
T cd08690 5 ELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDT---NSPEYNESFKLNINRKHRSFQRVFKRHGLK 81 (155)
T ss_pred EEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCC---CCCcccceEEEEeccccchhhhhccCCcEE
Confidence 467777777 4533 467999998843222 34456444433 4678888888887433 3377788899999
Q ss_pred Ee--eceEEEEecCceeeEEEEE
Q psy7273 237 FE--CRGLFLLHQGIQRRIRLTI 257 (413)
Q Consensus 237 iE--~~G~FqLhQGlQRRI~Vtl 257 (413)
|| +.|.|.-+..+==++.|.|
T Consensus 82 ~~V~d~~~f~~~D~~iG~~~i~L 104 (155)
T cd08690 82 FEVYHKGGFLRSDKLLGTAQVKL 104 (155)
T ss_pred EEEEeCCCcccCCCeeEEEEEEc
Confidence 99 6666532343333444433
No 13
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=58.91 E-value=30 Score=28.92 Aligned_cols=54 Identities=15% Similarity=0.181 Sum_probs=36.7
Q ss_pred EEEEEEEeecCCC-CC----CCeeEEEeeeCCCcccceecCcccCCCCCcceEEeEEEEEEE
Q psy7273 164 QFRITVLQAVGIS-TE----YSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNITV 220 (413)
Q Consensus 164 tf~V~I~~a~Glp-~~----~s~VfcQy~f~~~~e~~~st~p~~~~~~~~~~~F~h~~~~~v 220 (413)
..+|+|.+|.+|+ .+ .+|-||...+.......+.|..++++ ....|+.+..|.+
T Consensus 2 ~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t---~nP~Wne~f~f~~ 60 (111)
T cd04041 2 VLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKD---LNPVWEETWFVLV 60 (111)
T ss_pred EEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCC---CCCccceeEEEEe
Confidence 4689999999999 33 45799999886544445666554432 3566777666655
No 14
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=58.47 E-value=36 Score=28.70 Aligned_cols=54 Identities=15% Similarity=0.181 Sum_probs=38.0
Q ss_pred EEEEEEEeecCCC-CC---CCeeEEEeeeCCCc--ccceecCcccCCCCCcceEEeEEEEEEE
Q psy7273 164 QFRITVLQAVGIS-TE---YSDIFCQFNFLHRH--DEAFSTEPVKNTGKGTPLGFYHIQNITV 220 (413)
Q Consensus 164 tf~V~I~~a~Glp-~~---~s~VfcQy~f~~~~--e~~~st~p~~~~~~~~~~~F~h~~~~~v 220 (413)
.+.|+|++|.+|+ .+ .+|.||...+.... .....|..++++ ....|+++..|.+
T Consensus 17 ~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~---~nP~wne~f~f~i 76 (127)
T cd04030 17 KLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDN---LNPVFDETFEFPV 76 (127)
T ss_pred EEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCC---CCCEECeEEEEec
Confidence 4788999999999 43 46699999886532 234556555432 4788998877776
No 15
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=57.87 E-value=45 Score=29.32 Aligned_cols=52 Identities=19% Similarity=0.193 Sum_probs=35.4
Q ss_pred eEEEEEEEEeecCCCCC---CCeeEEEeeeCCCcccceecCcccCCCCCcceEEeEEEEEE
Q psy7273 162 ELQFRITVLQAVGISTE---YSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNIT 219 (413)
Q Consensus 162 ~ltf~V~I~~a~Glp~~---~s~VfcQy~f~~~~e~~~st~p~~~~~~~~~~~F~h~~~~~ 219 (413)
.-+++|+|.+|.||+.+ .+|-||...+.+. .+.|+.++++ ....|+.+..|.
T Consensus 27 ~~~L~V~V~~A~~L~~d~~g~~DPYVkV~~~~~---~~kT~vi~~t---~nPvWNE~F~f~ 81 (127)
T cd04032 27 LATLTVTVLRATGLWGDYFTSTDGYVKVFFGGQ---EKRTEVIWNN---NNPRWNATFDFG 81 (127)
T ss_pred cEEEEEEEEECCCCCcCcCCCCCeEEEEEECCc---cccCceecCC---CCCcCCCEEEEe
Confidence 34899999999999943 3468998887543 5566665532 355666665554
No 16
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=52.92 E-value=33 Score=29.22 Aligned_cols=50 Identities=22% Similarity=0.262 Sum_probs=34.4
Q ss_pred EEEEEEeecCCC-CC---CCeeEEEeeeCCCcccceecCcccCCCCCcceEEeEEEEEEE
Q psy7273 165 FRITVLQAVGIS-TE---YSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNITV 220 (413)
Q Consensus 165 f~V~I~~a~Glp-~~---~s~VfcQy~f~~~~e~~~st~p~~~~~~~~~~~F~h~~~~~v 220 (413)
.+|+|++|.||+ .+ .+|-||...+... .+.|..+.++ ....|+....|.+
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~~---~~kT~v~~~t---~nP~Wne~f~F~v 54 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGKE---KYSTSVKEKT---TSPVWKEECSFEL 54 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEECCe---eeeeeeecCC---CCCEeCceEEEEe
Confidence 379999999999 33 4679999988532 3455544422 4677777766666
No 17
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=52.67 E-value=65 Score=26.74 Aligned_cols=69 Identities=13% Similarity=0.029 Sum_probs=43.9
Q ss_pred CeEEEEEEEEeecCCCCCCCeeEEEeeeCCCcccceecCcccCCCCCcceEEeEEEEEEEecCHhHHHHhhcCCEEEe
Q psy7273 161 TELQFRITVLQAVGISTEYSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNITVPVSKSFIEYLKTQPLVFE 238 (413)
Q Consensus 161 ~~ltf~V~I~~a~Glp~~~s~VfcQy~f~~~~e~~~st~p~~~~~~~~~~~F~h~~~~~v~vTe~fi~~l~~~~l~iE 238 (413)
+.+..+|+|++|.+|+...+|-||...+.++ ...|...++ .....|+.+..|.+.... +-+.+..|.|+
T Consensus 2 ~~~~l~V~v~~a~~L~~~~~dpyv~v~~~~~---~~kT~~~~~---t~nP~wne~f~f~~~~~~---~~l~~~~l~i~ 70 (111)
T cd04011 2 QDFQVRVRVIEARQLVGGNIDPVVKVEVGGQ---KKYTSVKKG---TNCPFYNEYFFFNFHESP---DELFDKIIKIS 70 (111)
T ss_pred CcEEEEEEEEEcccCCCCCCCCEEEEEECCE---eeeeeEEec---cCCCccccEEEEecCCCH---HHHhcCeEEEE
Confidence 4678999999999999667789999998864 223333222 236677777666653333 22234445544
No 18
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=52.35 E-value=99 Score=25.53 Aligned_cols=50 Identities=18% Similarity=0.298 Sum_probs=33.5
Q ss_pred EEEEEEeecCCC-CC---------CCeeEEEeeeCCCcccceecCcccCCCCCcceEEeEEEEEEE
Q psy7273 165 FRITVLQAVGIS-TE---------YSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNITV 220 (413)
Q Consensus 165 f~V~I~~a~Glp-~~---------~s~VfcQy~f~~~~e~~~st~p~~~~~~~~~~~F~h~~~~~v 220 (413)
++|+|.+|.+|+ .+ .+|-||...+.+ ..+.|..++++ ....|+.+..|.+
T Consensus 3 l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~---~~~kT~~~~~t---~~P~W~e~f~~~v 62 (121)
T cd08391 3 LRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGA---QTFKSKVIKEN---LNPKWNEVYEAVV 62 (121)
T ss_pred EEEEEEEccCCcccccccccCCCCCcCCEEEEEECC---EeEEccccCCC---CCCcccceEEEEe
Confidence 679999999999 33 467999998864 35656554432 3455776655544
No 19
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=52.29 E-value=49 Score=27.52 Aligned_cols=52 Identities=13% Similarity=0.163 Sum_probs=34.4
Q ss_pred EEEEEEEeecCCC-CC---CCeeEEEeeeCCCcccceecCcccCCCCCcceEEeEEEEEEE
Q psy7273 164 QFRITVLQAVGIS-TE---YSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNITV 220 (413)
Q Consensus 164 tf~V~I~~a~Glp-~~---~s~VfcQy~f~~~~e~~~st~p~~~~~~~~~~~F~h~~~~~v 220 (413)
+.+|+|.+|.+|| .+ -+|-||...+.+. ...|+.+.+ ......|+++-.|.+
T Consensus 2 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~---~~kT~~~~~--~~~nP~Wne~f~f~v 57 (118)
T cd08681 2 TLVVVVLKARNLPNKRKLDKQDPYCVLRIGGV---TKKTKTDFR--GGQHPEWDEELRFEI 57 (118)
T ss_pred EEEEEEEEccCCCCCCcCCCCCceEEEEECCC---ccccccccC--CCCCCccCceEEEEe
Confidence 4689999999998 44 3569999987652 344444331 123667777766666
No 20
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=51.68 E-value=45 Score=27.90 Aligned_cols=54 Identities=13% Similarity=0.227 Sum_probs=35.3
Q ss_pred EEEEEEEeecCCC-CC----CCeeEEEeeeCCCcccceecCcccCCCCCcceEEeEEEEEEE
Q psy7273 164 QFRITVLQAVGIS-TE----YSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNITV 220 (413)
Q Consensus 164 tf~V~I~~a~Glp-~~----~s~VfcQy~f~~~~e~~~st~p~~~~~~~~~~~F~h~~~~~v 220 (413)
.+.|+|.+|.+|+ .+ .+|-||...+.........|...++ .....|+.+..|.+
T Consensus 15 ~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~---~~~P~wne~f~f~i 73 (123)
T cd08390 15 QLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRK---TQNPNFDETFVFQV 73 (123)
T ss_pred EEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcC---CCCCccceEEEEEc
Confidence 4779999999999 43 3468999888643333444544332 24667777666665
No 21
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=50.43 E-value=75 Score=26.79 Aligned_cols=54 Identities=17% Similarity=0.265 Sum_probs=36.0
Q ss_pred EEEEEEEeecCCC-CC---CCeeEEEeeeCCCcccceecCcccCCCCCcceEEeEEEEEEE
Q psy7273 164 QFRITVLQAVGIS-TE---YSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNITV 220 (413)
Q Consensus 164 tf~V~I~~a~Glp-~~---~s~VfcQy~f~~~~e~~~st~p~~~~~~~~~~~F~h~~~~~v 220 (413)
...|+|.+|.+|+ .+ .+|-||...+.......+-|..++++ ....|+.+..|.+
T Consensus 17 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t---~~P~wne~f~f~v 74 (124)
T cd08387 17 ILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKT---LNPEFDESFVFEV 74 (124)
T ss_pred EEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCC---CCCCcccEEEEeC
Confidence 4679999999998 34 45699998886433445656554432 3556777766654
No 22
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=49.46 E-value=63 Score=28.58 Aligned_cols=67 Identities=16% Similarity=0.189 Sum_probs=43.8
Q ss_pred EEEEEEEeecCCC-CC---CCeeEEEeeeCCCcccce--ecCcccCCCCCcceEEeEEEEEEEecCHhHHHHhhcCCEEE
Q psy7273 164 QFRITVLQAVGIS-TE---YSDIFCQFNFLHRHDEAF--STEPVKNTGKGTPLGFYHIQNITVPVSKSFIEYLKTQPLVF 237 (413)
Q Consensus 164 tf~V~I~~a~Glp-~~---~s~VfcQy~f~~~~e~~~--st~p~~~~~~~~~~~F~h~~~~~v~vTe~fi~~l~~~~l~i 237 (413)
...|+|++|.+|+ .+ .+|-|++..++....... -|...++ .....|+++..|.| +++ .+.+..|.|
T Consensus 16 ~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~---t~nP~~nE~f~F~v--~~~---~l~~~~l~~ 87 (136)
T cd08406 16 RLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRD---DTNPIFNEAMIFSV--PAI---VLQDLSLRV 87 (136)
T ss_pred EEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccC---CCCCeeceeEEEEC--CHH---HhCCcEEEE
Confidence 4789999999999 33 568999998875433322 2322222 24667999988876 443 356666666
Q ss_pred e
Q psy7273 238 E 238 (413)
Q Consensus 238 E 238 (413)
+
T Consensus 88 ~ 88 (136)
T cd08406 88 T 88 (136)
T ss_pred E
Confidence 5
No 23
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=49.27 E-value=53 Score=28.87 Aligned_cols=51 Identities=14% Similarity=0.264 Sum_probs=35.3
Q ss_pred EEEEEEEeecCCC-CC---CCeeEEEeeeCCCcccceecCcccCCCCCcceEEeEEEEEEE
Q psy7273 164 QFRITVLQAVGIS-TE---YSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNITV 220 (413)
Q Consensus 164 tf~V~I~~a~Glp-~~---~s~VfcQy~f~~~~e~~~st~p~~~~~~~~~~~F~h~~~~~v 220 (413)
..+|+|++|.||+ .+ .+|-||...+.+ ..+.|+.+.++ ....|+.+..|.+
T Consensus 16 ~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~---~~~kT~vi~~t---~nP~Wne~f~f~v 70 (136)
T cd08375 16 RLMVVIVEGRDLKPCNSNGKSDPYCEVSMGS---QEHKTKVVSDT---LNPKWNSSMQFFV 70 (136)
T ss_pred EEEEEEEEeeCCCCCCCCCCcCcEEEEEECC---EeeeccccCCC---CCCccCceEEEEe
Confidence 5889999999998 33 456999988753 24666655533 4667777666655
No 24
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=47.86 E-value=50 Score=27.81 Aligned_cols=54 Identities=15% Similarity=0.167 Sum_probs=33.1
Q ss_pred EEEEEEEeecCCC-CC---CCeeEEEeeeCCCcccceecCcccCCCCCcceEEeEEEEEEE
Q psy7273 164 QFRITVLQAVGIS-TE---YSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNITV 220 (413)
Q Consensus 164 tf~V~I~~a~Glp-~~---~s~VfcQy~f~~~~e~~~st~p~~~~~~~~~~~F~h~~~~~v 220 (413)
.|.|+|.+|.+|+ .+ .+|.||.....+.....+-|..+.++ ....|+.+..|.+
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t---~~P~Wne~f~f~i 59 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDT---LNPRWDEEFELEV 59 (126)
T ss_pred EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCC---CCCcccceEEEEc
Confidence 4789999999998 33 45799998765332334455444322 2444665544444
No 25
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=46.20 E-value=55 Score=27.22 Aligned_cols=49 Identities=18% Similarity=0.316 Sum_probs=31.7
Q ss_pred EEEEEeecCCC-CC----CCeeEEEeeeCCCcccceecCcccCCCCCcceEE-eEEEEEEE
Q psy7273 166 RITVLQAVGIS-TE----YSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGF-YHIQNITV 220 (413)
Q Consensus 166 ~V~I~~a~Glp-~~----~s~VfcQy~f~~~~e~~~st~p~~~~~~~~~~~F-~h~~~~~v 220 (413)
.|+|.+|.||| .+ .+|-||...+.+ ...-|..+.++ ....| +.+..|.+
T Consensus 2 ~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~---~~~kT~v~~~~---~nP~W~ne~f~f~i 56 (110)
T cd08688 2 KVRVVAARDLPVMDRSSDLTDAFVEVKFGS---TTYKTDVVKKS---LNPVWNSEWFRFEV 56 (110)
T ss_pred EEEEEEEECCCccccCCCCCCceEEEEECC---eeEecceecCC---CCCcccCcEEEEEc
Confidence 69999999998 33 357999998864 34445444322 35667 55544444
No 26
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=45.21 E-value=86 Score=26.03 Aligned_cols=53 Identities=21% Similarity=0.293 Sum_probs=36.4
Q ss_pred EEEEEEEeecCCC-CC-C---CeeEEEeeeCCCcccceecCcccCCCCCcceEEeEEEEEEE
Q psy7273 164 QFRITVLQAVGIS-TE-Y---SDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNITV 220 (413)
Q Consensus 164 tf~V~I~~a~Glp-~~-~---s~VfcQy~f~~~~e~~~st~p~~~~~~~~~~~F~h~~~~~v 220 (413)
..+|+|.+|.+|| .+ + +|-||.+.+.+. ...+.|..+.+ .....|+.+..|.+
T Consensus 3 ~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~-~~~~kT~~~~~---~~~P~Wne~~~~~v 60 (124)
T cd04044 3 VLAVTIKSARGLKGSDIIGGTVDPYVTFSISNR-RELARTKVKKD---TSNPVWNETKYILV 60 (124)
T ss_pred EEEEEEEcccCCCcccccCCCCCCeEEEEECCC-CcceEeeeecC---CCCCcceEEEEEEe
Confidence 3679999999999 34 2 579999999753 34556655443 24677776666655
No 27
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=45.03 E-value=60 Score=27.75 Aligned_cols=50 Identities=14% Similarity=0.214 Sum_probs=33.4
Q ss_pred EEEEEEeecCCCCCCCeeEEEeeeCCCcccceecCcccCCCCCcceEEeEEEEEEE
Q psy7273 165 FRITVLQAVGISTEYSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNITV 220 (413)
Q Consensus 165 f~V~I~~a~Glp~~~s~VfcQy~f~~~~e~~~st~p~~~~~~~~~~~F~h~~~~~v 220 (413)
..|+|.+|.||+...+|.||...+.+. ...|..++++ ....|+.+..|.+
T Consensus 2 L~V~Vi~a~~L~~~~~Dpyv~v~l~~~---~~kT~v~~~t---~nP~Wne~F~f~~ 51 (121)
T cd08378 2 LYVRVVKARGLPANSNDPVVEVKLGNY---KGSTKAIERT---SNPEWNQVFAFSK 51 (121)
T ss_pred EEEEEEEecCCCcccCCCEEEEEECCc---cccccccCCC---CCCccceEEEEEc
Confidence 469999999999557789999988642 3444443322 3566666655544
No 28
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=44.75 E-value=64 Score=28.10 Aligned_cols=53 Identities=19% Similarity=0.295 Sum_probs=37.6
Q ss_pred EEEEEEeecCCCC----CCCeeEEEeeeCCCcc---cceecCcccCCCCCcceEEeEEEEEEE
Q psy7273 165 FRITVLQAVGIST----EYSDIFCQFNFLHRHD---EAFSTEPVKNTGKGTPLGFYHIQNITV 220 (413)
Q Consensus 165 f~V~I~~a~Glp~----~~s~VfcQy~f~~~~e---~~~st~p~~~~~~~~~~~F~h~~~~~v 220 (413)
..|+|++|.+|+. ..+|.|+....+.... .-+-|..... .....|+++..|.|
T Consensus 16 L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~---t~nPvfnE~F~f~v 75 (124)
T cd08680 16 LVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALED---QDKPVFNEVFRVPI 75 (124)
T ss_pred EEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCC---CCCCccccEEEEEC
Confidence 6799999999984 3678999998886442 2455644432 35778988877765
No 29
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=44.24 E-value=76 Score=27.31 Aligned_cols=54 Identities=13% Similarity=0.214 Sum_probs=34.7
Q ss_pred EEEEEEEeecCCC-CC---CCeeEEEeeeCCCcc--cceecCcccCCCCCcceEEeEEEEEEE
Q psy7273 164 QFRITVLQAVGIS-TE---YSDIFCQFNFLHRHD--EAFSTEPVKNTGKGTPLGFYHIQNITV 220 (413)
Q Consensus 164 tf~V~I~~a~Glp-~~---~s~VfcQy~f~~~~e--~~~st~p~~~~~~~~~~~F~h~~~~~v 220 (413)
+++|+|.+|.+|+ .+ .+|-||...+.+... ....|...++ .....|+++..|.+
T Consensus 16 ~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~---t~nP~wne~f~f~i 75 (136)
T cd08402 16 KLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKR---TLNPYYNESFSFEV 75 (136)
T ss_pred eEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeC---CCCCcccceEEEEC
Confidence 5889999999998 33 567899988753211 2234544332 23667887766654
No 30
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=44.03 E-value=74 Score=27.39 Aligned_cols=54 Identities=15% Similarity=0.179 Sum_probs=35.4
Q ss_pred EEEEEEEeecCCC-CC---CCeeEEEeeeCCCcc--cceecCcccCCCCCcceEEeEEEEEEE
Q psy7273 164 QFRITVLQAVGIS-TE---YSDIFCQFNFLHRHD--EAFSTEPVKNTGKGTPLGFYHIQNITV 220 (413)
Q Consensus 164 tf~V~I~~a~Glp-~~---~s~VfcQy~f~~~~e--~~~st~p~~~~~~~~~~~F~h~~~~~v 220 (413)
++.|+|.+|.+|+ .+ .+|.||......... ....|..++++ ....|+.+..|.+
T Consensus 16 ~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t---~~P~wne~F~f~i 75 (136)
T cd08405 16 RITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRT---LNPVFNESFIFNI 75 (136)
T ss_pred eEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCC---CCCcccceEEEeC
Confidence 5789999999998 34 456899887753222 23345444422 3567888777765
No 31
>PF13752 DUF4165: Domain of unknown function (DUF4165)
Probab=43.99 E-value=98 Score=27.72 Aligned_cols=44 Identities=16% Similarity=0.264 Sum_probs=36.0
Q ss_pred EEEEecCceeeEEEEEEeccCCceeeeeeeEEEeceeecCCCCCC
Q psy7273 242 LFLLHQGIQRRIRLTIVHEQVPEIRWKDVKELVVGRIRNTPEPEM 286 (413)
Q Consensus 242 ~FqLhQGlQRRI~Vtl~h~sG~~L~w~~i~~l~vG~vR~~~~~~~ 286 (413)
.|-|--||-|+|+|++.-.+|.. .|...++-.+|.=|.+-..+.
T Consensus 36 ~~~l~sGLDRkvrvsv~~~~~~~-v~st~Ts~v~~~d~~~s~~G~ 79 (124)
T PF13752_consen 36 TFYLISGLDRKVRVSVTRSSGKV-VYSTTTSKVLVADRRISSNGK 79 (124)
T ss_pred EEEEEccccceEEEEEEeCCCcE-EEEeecceEEeeeeeEEeCCc
Confidence 57789999999999999999977 888888888887776544333
No 32
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=43.89 E-value=21 Score=25.67 Aligned_cols=29 Identities=21% Similarity=0.352 Sum_probs=21.6
Q ss_pred CCcHHHHHHHHHHHHhcccccccchHHHH
Q psy7273 24 TWTEREFALAAWAFRKWKYHQFTSLRDDL 52 (413)
Q Consensus 24 ~wt~~e~~lar~~~~kWk~~~~~sLrE~l 52 (413)
.||++|.+++..++.+--..++..+++.+
T Consensus 3 ~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~ 31 (48)
T PF00249_consen 3 PWTEEEDEKLLEAVKKYGKDNWKKIAKRM 31 (48)
T ss_dssp SS-HHHHHHHHHHHHHSTTTHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCcHHHHHHHHc
Confidence 59999999999999987766555555444
No 33
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=43.39 E-value=1.3e+02 Score=25.89 Aligned_cols=59 Identities=10% Similarity=0.187 Sum_probs=40.8
Q ss_pred CCeEEEEEEEEeecCCCCCCCeeEEEeeeCCCcccceecCcccCCCCCcceEEeEEEEEEE
Q psy7273 160 GTELQFRITVLQAVGISTEYSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNITV 220 (413)
Q Consensus 160 g~~ltf~V~I~~a~Glp~~~s~VfcQy~f~~~~e~~~st~p~~~~~~~~~~~F~h~~~~~v 220 (413)
.-++.|.|+|+++.++|..-..|+++...-+.......|++.. ...+.+.|++...+.+
T Consensus 4 ~~kf~~~l~i~~l~~~p~~~~~v~v~wkr~~~~~~~~~t~~~~--~~~~~v~w~e~~~~~~ 62 (143)
T PF10358_consen 4 AVKFQFDLTIHELENLPSSNGKVFVKWKRGDKSKGSGTTSRAN--VKNGKVQWNEEFSFPC 62 (143)
T ss_pred eeeEEEEEEEEEeECcCCCCCEEEEEEEECCCCccceeeeeee--ccccEEEEeeEEEEEE
Confidence 3689999999999999996666888876554432233444433 2346889997777776
No 34
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=42.89 E-value=76 Score=26.09 Aligned_cols=50 Identities=4% Similarity=-0.033 Sum_probs=33.8
Q ss_pred EEEEEEeecCCC-CC---CCeeEEEeeeCCCcccceecCcccCCCCCcceEEeEEEEEEE
Q psy7273 165 FRITVLQAVGIS-TE---YSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNITV 220 (413)
Q Consensus 165 f~V~I~~a~Glp-~~---~s~VfcQy~f~~~~e~~~st~p~~~~~~~~~~~F~h~~~~~v 220 (413)
..|+|++|.+|| .+ -+|-||...+-+ ....|....+ .....++....|.+
T Consensus 2 L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~---~~~kT~v~~~---t~nP~Wne~f~f~v 55 (105)
T cd04050 2 LFVYLDSAKNLPLAKSTKEPSPYVELTVGK---TTQKSKVKER---TNNPVWEEGFTFLV 55 (105)
T ss_pred EEEEEeeecCCCCcccCCCCCcEEEEEECC---EEEeCccccC---CCCCcccceEEEEe
Confidence 468999999999 33 456899998875 3445544332 24677777766666
No 35
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=40.80 E-value=1e+02 Score=27.43 Aligned_cols=66 Identities=14% Similarity=0.199 Sum_probs=45.2
Q ss_pred EEEEEEeecCCC-CC-----CCeeEEEeeeCCCcccc--eecCcccCCCCCcceEEeEEEEEEEecCHhHHHHhhcCCEE
Q psy7273 165 FRITVLQAVGIS-TE-----YSDIFCQFNFLHRHDEA--FSTEPVKNTGKGTPLGFYHIQNITVPVSKSFIEYLKTQPLV 236 (413)
Q Consensus 165 f~V~I~~a~Glp-~~-----~s~VfcQy~f~~~~e~~--~st~p~~~~~~~~~~~F~h~~~~~v~vTe~fi~~l~~~~l~ 236 (413)
+.|+|++|.+|+ .+ .+|.|+...+.+....+ .-|...+ +.....|+.+..|.| +. +.|.+..|.
T Consensus 17 L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k---~t~nPvfNE~f~F~v--~~---~~L~~~~L~ 88 (138)
T cd08407 17 LLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAK---HKINPVWNEMIMFEL--PS---ELLAASSVE 88 (138)
T ss_pred EEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceee---CCCCCccccEEEEEC--CH---HHhCccEEE
Confidence 779999999998 43 25899999988754332 2243322 234778998888876 43 456677777
Q ss_pred Ee
Q psy7273 237 FE 238 (413)
Q Consensus 237 iE 238 (413)
|+
T Consensus 89 ~~ 90 (138)
T cd08407 89 LE 90 (138)
T ss_pred EE
Confidence 76
No 36
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=39.62 E-value=1.2e+02 Score=25.01 Aligned_cols=50 Identities=10% Similarity=0.278 Sum_probs=32.8
Q ss_pred EEEEEEeecCCCC-C---CCeeEEEeeeCCCcccceecCcccCCCCCcceEEeEEEEEEE
Q psy7273 165 FRITVLQAVGIST-E---YSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNITV 220 (413)
Q Consensus 165 f~V~I~~a~Glp~-~---~s~VfcQy~f~~~~e~~~st~p~~~~~~~~~~~F~h~~~~~v 220 (413)
++|+|.+|.+||. + .+|-||...+.+. ...|...+++ ....|+++..|.+
T Consensus 2 ~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~~---~~kT~v~~~t---~nP~Wne~f~f~~ 55 (116)
T cd08376 2 VTIVLVEGKNLPPMDDNGLSDPYVKFRLGNE---KYKSKVCSKT---LNPQWLEQFDLHL 55 (116)
T ss_pred EEEEEEEEECCCCCCCCCCCCcEEEEEECCE---eEecccccCC---CCCceeEEEEEEe
Confidence 6899999999993 3 4678998887532 3445443322 3556777666555
No 37
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=39.51 E-value=84 Score=26.85 Aligned_cols=52 Identities=13% Similarity=0.160 Sum_probs=32.3
Q ss_pred EEEEEEeecCCC-CC---CCeeEEEeeeCCCcccceecCcccCCCCCcceEEeEEEEEEE
Q psy7273 165 FRITVLQAVGIS-TE---YSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNITV 220 (413)
Q Consensus 165 f~V~I~~a~Glp-~~---~s~VfcQy~f~~~~e~~~st~p~~~~~~~~~~~F~h~~~~~v 220 (413)
.+|+|++|.||+ .+ .+|-||.+.+.+.. ....|..+.+ .....|+.+..|.+
T Consensus 2 lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~-~~~kT~~v~~---t~nP~Wne~f~f~~ 57 (124)
T cd04037 2 VRVYVVRARNLQPKDPNGKSDPYLKIKLGKKK-INDRDNYIPN---TLNPVFGKMFELEA 57 (124)
T ss_pred EEEEEEECcCCCCCCCCCCCCcEEEEEECCee-ccceeeEEEC---CCCCccceEEEEEe
Confidence 589999999998 33 56789999886532 2233333332 23556665555543
No 38
>KOG2983|consensus
Probab=39.39 E-value=24 Score=35.56 Aligned_cols=45 Identities=31% Similarity=0.571 Sum_probs=30.2
Q ss_pred eEEEeeeCCCcccceecCcccCCCCCcceEEeEEEEEEEecCHhHHHHhhcCCEEEeeceEEEEecCcee
Q psy7273 182 IFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNITVPVSKSFIEYLKTQPLVFECRGLFLLHQGIQR 251 (413)
Q Consensus 182 VfcQy~f~~~~e~~~st~p~~~~~~~~~~~F~h~~~~~v~vTe~fi~~l~~~~l~iE~~G~FqLhQGlQR 251 (413)
.||||++|+. .|..-+.+ +..+++.+.|++||.... ++|-||.--
T Consensus 7 ~hCqfs~Wy~---lfrklt~K--------------s~vl~lP~~fi~YL~dDg--------i~lpq~~n~ 51 (334)
T KOG2983|consen 7 LHCQFSNWYP---LFRKLTIK--------------SKVLPLPESFINYLIDDG--------ILLPQSVNN 51 (334)
T ss_pred hheeeehhhh---hhcccccc--------------ceEeeCcHHHHHHhHhcc--------eeccccCCC
Confidence 6999999974 44432222 245588999999986543 566666543
No 39
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=38.71 E-value=81 Score=26.29 Aligned_cols=54 Identities=13% Similarity=0.185 Sum_probs=34.8
Q ss_pred EEEEEEEeecCCC-CC----CCeeEEEeeeCCCcc--cceecCcccCCCCCcceEEeEEEEEEE
Q psy7273 164 QFRITVLQAVGIS-TE----YSDIFCQFNFLHRHD--EAFSTEPVKNTGKGTPLGFYHIQNITV 220 (413)
Q Consensus 164 tf~V~I~~a~Glp-~~----~s~VfcQy~f~~~~e--~~~st~p~~~~~~~~~~~F~h~~~~~v 220 (413)
.+.|+|.+|.+|+ .+ .+|.||...+.+... ....|...++ .....|+.+..|.+
T Consensus 15 ~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~---t~~P~wne~f~f~i 75 (123)
T cd08521 15 SLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKN---TTNPVFNETLKYHI 75 (123)
T ss_pred EEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCC---CCCCcccceEEEeC
Confidence 4779999999998 34 456899987764322 1234444332 24667777766665
No 40
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=38.18 E-value=88 Score=26.69 Aligned_cols=54 Identities=15% Similarity=0.226 Sum_probs=34.8
Q ss_pred EEEEEEEeecCCC-CC---CCeeEEEeeeCCCccc--ceecCcccCCCCCcceEEeEEEEEEE
Q psy7273 164 QFRITVLQAVGIS-TE---YSDIFCQFNFLHRHDE--AFSTEPVKNTGKGTPLGFYHIQNITV 220 (413)
Q Consensus 164 tf~V~I~~a~Glp-~~---~s~VfcQy~f~~~~e~--~~st~p~~~~~~~~~~~F~h~~~~~v 220 (413)
++.|+|++|.||| .+ .+|-||+..+.+.... ...|+...+ .....|+.+..|.+
T Consensus 14 ~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~---t~nP~wne~f~f~~ 73 (133)
T cd08384 14 GLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKK---TLNPEFNEEFFYDI 73 (133)
T ss_pred EEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEec---cCCCCcccEEEEEC
Confidence 5789999999998 33 5689999988753222 233433332 23567777766654
No 41
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=38.00 E-value=80 Score=26.57 Aligned_cols=55 Identities=18% Similarity=0.277 Sum_probs=35.9
Q ss_pred eEEEEEEEEeecCCC-C---CCCeeEEEeeeCCCcc--cceecCcccCCCCCcceEEeEEEEEE
Q psy7273 162 ELQFRITVLQAVGIS-T---EYSDIFCQFNFLHRHD--EAFSTEPVKNTGKGTPLGFYHIQNIT 219 (413)
Q Consensus 162 ~ltf~V~I~~a~Glp-~---~~s~VfcQy~f~~~~e--~~~st~p~~~~~~~~~~~F~h~~~~~ 219 (413)
+-+++|+|.+|.+|+ . ..+|.||...+.+... ....|+.+++ .....|+++..|.
T Consensus 14 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~---~~~P~Wne~f~f~ 74 (123)
T cd04035 14 NSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHK---TRNPEFNETLTYY 74 (123)
T ss_pred CCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecC---CCCCCccceEEEc
Confidence 346899999999998 3 3567999998864332 2334544442 2466777776653
No 42
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=36.38 E-value=99 Score=26.66 Aligned_cols=54 Identities=26% Similarity=0.254 Sum_probs=35.3
Q ss_pred EEEEEEEeecCCCC----CCCeeEEEeeeCCCc----ccceecCcccCCCCCcceEEeEEEEEEE
Q psy7273 164 QFRITVLQAVGIST----EYSDIFCQFNFLHRH----DEAFSTEPVKNTGKGTPLGFYHIQNITV 220 (413)
Q Consensus 164 tf~V~I~~a~Glp~----~~s~VfcQy~f~~~~----e~~~st~p~~~~~~~~~~~F~h~~~~~v 220 (413)
++.|+|.+|.|||. ..+|.||...+.+.. .....|..+.++ ....|+.+..|.+
T Consensus 17 ~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t---~nP~wnE~f~f~i 78 (133)
T cd04009 17 SLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKT---LFPLFDESFEFNV 78 (133)
T ss_pred EEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCC---CCCccCCEEEEEe
Confidence 57899999999983 356799998886432 123455554433 3566776666655
No 43
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=35.41 E-value=85 Score=27.29 Aligned_cols=53 Identities=15% Similarity=0.218 Sum_probs=35.7
Q ss_pred EEEEEEeecCCCC---CCCeeEEEeeeCCC--ccc--ceecCcccCCCCCcceEEeEEEEEEE
Q psy7273 165 FRITVLQAVGIST---EYSDIFCQFNFLHR--HDE--AFSTEPVKNTGKGTPLGFYHIQNITV 220 (413)
Q Consensus 165 f~V~I~~a~Glp~---~~s~VfcQy~f~~~--~e~--~~st~p~~~~~~~~~~~F~h~~~~~v 220 (413)
.+|+|.+|.+|+. ..+|-||+..+.+. .+. .+.|.-.++ .....|+.+..|.+
T Consensus 2 L~V~Vi~A~~L~~~d~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~---tlnPvwNE~f~F~v 61 (120)
T cd08395 2 VTVKVVAANDLKWQTTGMFRPFVEVNLIGPHLSDKKRKFATKSKNN---NWSPKYNETFQFIL 61 (120)
T ss_pred EEEEEEECcCCCcccCCCCCCEEEEEEecCCCcccccEeeeEEecC---CCCCccCcEEEEEe
Confidence 5799999999994 37789999998641 122 234433222 24677888777777
No 44
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=35.32 E-value=1.1e+02 Score=25.71 Aligned_cols=51 Identities=18% Similarity=0.283 Sum_probs=31.8
Q ss_pred EEEEEEEeecCCC-CCC-----CeeEEEeeeCCCcccceecCcccCCCCCcceEEeEEEEEEE
Q psy7273 164 QFRITVLQAVGIS-TEY-----SDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNITV 220 (413)
Q Consensus 164 tf~V~I~~a~Glp-~~~-----s~VfcQy~f~~~~e~~~st~p~~~~~~~~~~~F~h~~~~~v 220 (413)
..+|+|.+|.+|+ .+. +|-||...+-. ..+.|..+.++ ....|+.+..|.+
T Consensus 2 ~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~---~~~kT~~~~~t---~~P~Wne~f~~~~ 58 (128)
T cd04024 2 VLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGA---QRFKTQTIPNT---LNPKWNYWCEFPI 58 (128)
T ss_pred EEEEEEEEeeCCCcccCCCCCCcCCeEEEEECC---EEEecceecCC---cCCccCCcEEEEe
Confidence 3679999999998 333 56899887632 34555444432 3445666555544
No 45
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=35.28 E-value=1.4e+02 Score=25.38 Aligned_cols=51 Identities=27% Similarity=0.329 Sum_probs=33.6
Q ss_pred EEEEEEeecCCC-CC---CCeeEEEeeeCCCcccceecCcccCCCCCcceEEeEEEEEEE
Q psy7273 165 FRITVLQAVGIS-TE---YSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNITV 220 (413)
Q Consensus 165 f~V~I~~a~Glp-~~---~s~VfcQy~f~~~~e~~~st~p~~~~~~~~~~~F~h~~~~~v 220 (413)
.+|+|++|.+|+ .+ .+|.||...+-+ ...+.|....++ ....|+.+..|.+
T Consensus 2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~--~~~~kT~v~~~t---~nP~Wne~f~~~~ 56 (123)
T cd08382 2 VRLTVLCADGLAKRDLFRLPDPFAVITVDG--GQTHSTDVAKKT---LDPKWNEHFDLTV 56 (123)
T ss_pred eEEEEEEecCCCccCCCCCCCcEEEEEECC--ccceEccEEcCC---CCCcccceEEEEe
Confidence 579999999998 33 356999988753 345666554422 3566666655555
No 46
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=34.92 E-value=1.4e+02 Score=25.65 Aligned_cols=54 Identities=13% Similarity=0.237 Sum_probs=34.7
Q ss_pred EEEEEEEeecCCC-CC---CCeeEEEeeeCCCccc--ceecCcccCCCCCcceEEeEEEEEEE
Q psy7273 164 QFRITVLQAVGIS-TE---YSDIFCQFNFLHRHDE--AFSTEPVKNTGKGTPLGFYHIQNITV 220 (413)
Q Consensus 164 tf~V~I~~a~Glp-~~---~s~VfcQy~f~~~~e~--~~st~p~~~~~~~~~~~F~h~~~~~v 220 (413)
.++|+|.+|.+|+ .+ .+|-||...+.+.... ...|...+ +.....|+.+..|.+
T Consensus 15 ~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~---~t~nP~wne~f~f~i 74 (134)
T cd08403 15 RLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKK---NTLNPTYNEALVFDV 74 (134)
T ss_pred EEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCccc---CCCCCcccceEEEEC
Confidence 4789999999999 33 5679999988642222 23343322 224667777766665
No 47
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=34.54 E-value=1.2e+02 Score=26.02 Aligned_cols=54 Identities=19% Similarity=0.221 Sum_probs=36.4
Q ss_pred EEEEEEEeecCCC-CC----CCeeEEEeeeCCCcccc--eecCcccCCCCCcceEEeEEEEEEE
Q psy7273 164 QFRITVLQAVGIS-TE----YSDIFCQFNFLHRHDEA--FSTEPVKNTGKGTPLGFYHIQNITV 220 (413)
Q Consensus 164 tf~V~I~~a~Glp-~~----~s~VfcQy~f~~~~e~~--~st~p~~~~~~~~~~~F~h~~~~~v 220 (413)
...|+|++|.+|| .+ .+|-|+...+....... .-|..++++ ....|+.+..|.+
T Consensus 16 ~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t---~nP~~nE~f~f~v 76 (125)
T cd08393 16 ELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKT---LNPVFNETLRYKV 76 (125)
T ss_pred EEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCC---CCCccCceEEEEC
Confidence 4789999999999 33 45799998887543222 345444422 4778887766655
No 48
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=33.63 E-value=1.3e+02 Score=25.90 Aligned_cols=54 Identities=11% Similarity=0.150 Sum_probs=35.0
Q ss_pred EEEEEEEeecCCCC-C----CCeeEEEeeeCCCccc--ceecCcccCCCCCcceEEeEEEEEEE
Q psy7273 164 QFRITVLQAVGIST-E----YSDIFCQFNFLHRHDE--AFSTEPVKNTGKGTPLGFYHIQNITV 220 (413)
Q Consensus 164 tf~V~I~~a~Glp~-~----~s~VfcQy~f~~~~e~--~~st~p~~~~~~~~~~~F~h~~~~~v 220 (413)
+..|+|++|.||+. + .+|-|+...+...... ..-|...++ .....|+.+..|.+
T Consensus 16 ~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~---t~nP~wnE~f~f~i 76 (125)
T cd04029 16 SLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRN---TTNPVYNETLKYSI 76 (125)
T ss_pred eEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeC---CCCCcccceEEEEC
Confidence 47889999999983 2 4679999888643322 223433332 24777888777765
No 49
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=33.61 E-value=1.4e+02 Score=26.25 Aligned_cols=67 Identities=13% Similarity=0.208 Sum_probs=42.6
Q ss_pred EEEEEEEeecCCCC-C---CCeeEEEeeeCCCcccc---eecCcccCCCCCcceEEeEEEEEEEecCHhHHHHhhcCCEE
Q psy7273 164 QFRITVLQAVGIST-E---YSDIFCQFNFLHRHDEA---FSTEPVKNTGKGTPLGFYHIQNITVPVSKSFIEYLKTQPLV 236 (413)
Q Consensus 164 tf~V~I~~a~Glp~-~---~s~VfcQy~f~~~~e~~---~st~p~~~~~~~~~~~F~h~~~~~v~vTe~fi~~l~~~~l~ 236 (413)
++.|+|++|.+|+. + .+|.|+...++...... .-|.... +.....|+.+..|.+ ++ +-+.+..|.
T Consensus 16 ~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~---~t~nPvfnEtF~f~i--~~---~~l~~~~L~ 87 (138)
T cd08408 16 RLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRR---GQPDPEFKETFVFQV--AL---FQLSEVTLM 87 (138)
T ss_pred eEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeec---CCCCCcEeeeEEEEC--CH---HHhCccEEE
Confidence 57899999999993 3 45789998887432211 2343322 235888998888877 43 235555555
Q ss_pred Ee
Q psy7273 237 FE 238 (413)
Q Consensus 237 iE 238 (413)
|+
T Consensus 88 ~~ 89 (138)
T cd08408 88 FS 89 (138)
T ss_pred EE
Confidence 55
No 50
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=33.52 E-value=1.2e+02 Score=25.54 Aligned_cols=51 Identities=8% Similarity=0.225 Sum_probs=34.1
Q ss_pred EEEEEEeecCCC-CC---CCeeEEEeeeCCCcccceecCcccCCCCCcceEEeEEEEEEE
Q psy7273 165 FRITVLQAVGIS-TE---YSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNITV 220 (413)
Q Consensus 165 f~V~I~~a~Glp-~~---~s~VfcQy~f~~~~e~~~st~p~~~~~~~~~~~F~h~~~~~v 220 (413)
.+|+|.+|.+|+ .+ .+|-||...+.+ ...+.|....++ ....|++...|.+
T Consensus 2 L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~--~~~~kT~~~~~t---~nP~Wne~f~f~v 56 (121)
T cd04042 2 LDIHLKEGRNLAARDRGGTSDPYVKFKYGG--KTVYKSKTIYKN---LNPVWDEKFTLPI 56 (121)
T ss_pred eEEEEEEeeCCCCcCCCCCCCCeEEEEECC--EEEEEeeeccCC---CCCccceeEEEEe
Confidence 579999999998 44 567899988753 235566554432 3667776655554
No 51
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=33.18 E-value=96 Score=28.09 Aligned_cols=51 Identities=14% Similarity=0.204 Sum_probs=35.3
Q ss_pred EEEEEEEeecCCC-CC-----------------CCeeEEEeeeCCCcccceecCcccCCCCCcceEEeEEEEEEE
Q psy7273 164 QFRITVLQAVGIS-TE-----------------YSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNITV 220 (413)
Q Consensus 164 tf~V~I~~a~Glp-~~-----------------~s~VfcQy~f~~~~e~~~st~p~~~~~~~~~~~F~h~~~~~v 220 (413)
++.|+|.+|.+|| .+ .+|-||...|.+.. ..|..++++ ....|+.+..|.+
T Consensus 1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~---~kT~v~~~t---~nPvWNE~f~f~v 69 (151)
T cd04018 1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQK---VKTSVKKNS---YNPEWNEQIVFPE 69 (151)
T ss_pred CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEe---eecceEcCC---CCCCcceEEEEEe
Confidence 3789999999999 44 46889998887642 345444432 4677777777765
No 52
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=32.69 E-value=1.1e+02 Score=25.14 Aligned_cols=51 Identities=20% Similarity=0.337 Sum_probs=32.2
Q ss_pred EEEEEEeecCCC-CC---CCeeEEEeeeCCCcccceecCcccCCCCCcceEEeEEEEEEE
Q psy7273 165 FRITVLQAVGIS-TE---YSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNITV 220 (413)
Q Consensus 165 f~V~I~~a~Glp-~~---~s~VfcQy~f~~~~e~~~st~p~~~~~~~~~~~F~h~~~~~v 220 (413)
++|+|++|.+|+ .+ .+|-||-....+ ...+.|+.+.+ .....|+.+..|.+
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~--~~~~~T~v~~~---~~~P~Wne~f~~~~ 55 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLNG--EKVFKTKTIKK---TLNPVWNESFEVPV 55 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEECC--CcceeeceecC---CCCCcccccEEEEe
Confidence 478999999999 33 456788877643 34566655443 23556666555544
No 53
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=32.68 E-value=41 Score=22.79 Aligned_cols=29 Identities=21% Similarity=0.369 Sum_probs=21.0
Q ss_pred CCCcHHHHHHHHHHHHhcccccccchHHH
Q psy7273 23 CTWTEREFALAAWAFRKWKYHQFTSLRDD 51 (413)
Q Consensus 23 ~~wt~~e~~lar~~~~kWk~~~~~sLrE~ 51 (413)
..||++|..++..++.+....++..+++.
T Consensus 2 ~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~ 30 (49)
T smart00717 2 GEWTEEEDELLIELVKKYGKNNWEKIAKE 30 (49)
T ss_pred CCCCHHHHHHHHHHHHHHCcCCHHHHHHH
Confidence 36999999999999997654444444443
No 54
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=32.63 E-value=1.1e+02 Score=25.69 Aligned_cols=50 Identities=20% Similarity=0.296 Sum_probs=32.9
Q ss_pred EEEEEEeecCCC-CC---CCeeEEEeeeCCCcccceecCcccCCCCCcceEEeEEEEEEE
Q psy7273 165 FRITVLQAVGIS-TE---YSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNITV 220 (413)
Q Consensus 165 f~V~I~~a~Glp-~~---~s~VfcQy~f~~~~e~~~st~p~~~~~~~~~~~F~h~~~~~v 220 (413)
++|+|.+|.+|+ .+ .+|-||...+.+. ...|+.+.++ ....|+.+..|.+
T Consensus 2 L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~---~~kT~v~~~t---~nP~Wne~f~f~~ 55 (123)
T cd04025 2 LRCHVLEARDLAPKDRNGTSDPFVRVFYNGQ---TLETSVVKKS---CYPRWNEVFEFEL 55 (123)
T ss_pred EEEEEEEeeCCCCCCCCCCcCceEEEEECCE---EEeceeecCC---CCCccCcEEEEEc
Confidence 579999999998 33 4578999887532 3445444432 2455777666665
No 55
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=31.93 E-value=64 Score=27.69 Aligned_cols=27 Identities=15% Similarity=0.404 Sum_probs=23.2
Q ss_pred EEEEEEEeecCCC-CCCCeeEEEeeeCC
Q psy7273 164 QFRITVLQAVGIS-TEYSDIFCQFNFLH 190 (413)
Q Consensus 164 tf~V~I~~a~Glp-~~~s~VfcQy~f~~ 190 (413)
..+|+|++|.||| ...+|-||...+-+
T Consensus 5 ~L~V~Vi~A~~L~~~~~~DPYv~v~l~~ 32 (126)
T cd08400 5 SLQLNVLEAHKLPVKHVPHPYCVISLNE 32 (126)
T ss_pred EEEEEEEEeeCCCCCCCCCeeEEEEECC
Confidence 5789999999999 55788999998853
No 56
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=31.67 E-value=1.1e+02 Score=26.94 Aligned_cols=51 Identities=16% Similarity=0.251 Sum_probs=32.4
Q ss_pred EEEEEeecCCCCCCCeeEEEeeeCCCcc--cceecCcccCCCCCcceEEeEEEEEEE
Q psy7273 166 RITVLQAVGISTEYSDIFCQFNFLHRHD--EAFSTEPVKNTGKGTPLGFYHIQNITV 220 (413)
Q Consensus 166 ~V~I~~a~Glp~~~s~VfcQy~f~~~~e--~~~st~p~~~~~~~~~~~F~h~~~~~v 220 (413)
.|+|++|.||+ ..+|-||.+.+....+ ..+-|..+.++ ....|+.+..|.+
T Consensus 2 ~V~V~~A~~L~-~~sDPYV~l~v~~~~~~~~~~KTk~i~~T---lnPvWnE~F~i~l 54 (118)
T cd08686 2 NVIVHSAQGFK-QSANLYCTLEVDSFGYFVKKAKTRVCRDT---TEPNWNEEFEIEL 54 (118)
T ss_pred EEEEEeCCCCC-CCCCCEEEEEEcCccccceeeeeeeecCC---CCCccceEEEEEe
Confidence 68999999997 4589999997764322 34545444322 3455555555544
No 57
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=31.58 E-value=1.6e+02 Score=21.89 Aligned_cols=51 Identities=25% Similarity=0.333 Sum_probs=32.4
Q ss_pred EEEEEEeecCCCC----CCCeeEEEeeeCCCcccceecCcccCCCCCcceEEeEEEEEEE
Q psy7273 165 FRITVLQAVGIST----EYSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNITV 220 (413)
Q Consensus 165 f~V~I~~a~Glp~----~~s~VfcQy~f~~~~e~~~st~p~~~~~~~~~~~F~h~~~~~v 220 (413)
+.|.|++|.+|+. ...+.||...+.+ ...+.|...... ....|+....|.+
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~--~~~~~T~~~~~~---~~P~w~~~~~~~~ 55 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGG--KQKFKTKVVKNT---LNPVWNETFEFPV 55 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEecc--CceEecceeCCC---CCCcccceEEEEc
Confidence 3689999999984 4556999998886 234445433321 3445666555555
No 58
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=31.06 E-value=1.1e+02 Score=25.22 Aligned_cols=50 Identities=16% Similarity=0.191 Sum_probs=33.9
Q ss_pred EEEEEEeecCCCC-CCCeeEEEeeeCCCcccceecCcccCCCCCcceEEeEEEEEEE
Q psy7273 165 FRITVLQAVGIST-EYSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNITV 220 (413)
Q Consensus 165 f~V~I~~a~Glp~-~~s~VfcQy~f~~~~e~~~st~p~~~~~~~~~~~F~h~~~~~v 220 (413)
.+|+|.+|.|||. ..+|.||-..+.+ ...+.|...++ ....|+++-.|.+
T Consensus 2 L~v~vi~a~~l~~~~~~dpyv~v~~~~--~~~~kT~~~~~----~~P~Wne~f~f~v 52 (117)
T cd08383 2 LRLRILEAKNLPSKGTRDPYCTVSLDQ--VEVARTKTVEK----LNPFWGEEFVFDD 52 (117)
T ss_pred eEEEEEEecCCCcCCCCCceEEEEECC--EEeEecceEEC----CCCcccceEEEec
Confidence 5799999999995 5667999998864 23455544332 3556777665555
No 59
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=30.71 E-value=43 Score=35.40 Aligned_cols=25 Identities=28% Similarity=0.271 Sum_probs=19.5
Q ss_pred HHHHHHHHhcccccEEEEecCCccc
Q psy7273 61 EANAISVELKKKTRSVMVTAGEVIV 85 (413)
Q Consensus 61 EAN~IS~EL~K~VqFvll~~p~L~~ 85 (413)
=|.+||+||+++|.|+.+++.++-|
T Consensus 66 lA~~ia~eLG~~~PF~~isgSEiyS 90 (398)
T PF06068_consen 66 LAMAIAKELGEDVPFVSISGSEIYS 90 (398)
T ss_dssp HHHHHHHHCTTTS-EEEEEGGGG-B
T ss_pred HHHHHHHHhCCCCCeeEcccceeee
Confidence 4789999999999999999765544
No 60
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=30.67 E-value=1.8e+02 Score=25.34 Aligned_cols=54 Identities=17% Similarity=0.316 Sum_probs=35.7
Q ss_pred EEEEEEEeecCCC-CC--CCeeEEEeeeCCCccc--ceecCcccCCCCCcceEEeEEEEEEE
Q psy7273 164 QFRITVLQAVGIS-TE--YSDIFCQFNFLHRHDE--AFSTEPVKNTGKGTPLGFYHIQNITV 220 (413)
Q Consensus 164 tf~V~I~~a~Glp-~~--~s~VfcQy~f~~~~e~--~~st~p~~~~~~~~~~~F~h~~~~~v 220 (413)
++.|+|++|.+|+ .+ .+|.|+...+.+.... ...|...+ +.....|+.+..|.|
T Consensus 16 ~L~V~V~~a~nL~~~~~~~~d~yVkv~l~~~~~~~~~~kT~v~~---~~~nP~fnE~F~f~i 74 (137)
T cd08409 16 RLTVVVLRARGLRQLDHAHTSVYVKVSLMIHNKVVKTKKTEVVD---GAASPSFNESFSFKV 74 (137)
T ss_pred eEEEEEEEecCCCcccCCCCCeEEEEEEEECCEEeeeeecccEe---CCCCCcccceEEEEC
Confidence 4789999999998 32 5679999988753221 12343333 235777888877765
No 61
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=30.53 E-value=2e+02 Score=23.92 Aligned_cols=53 Identities=21% Similarity=0.261 Sum_probs=35.1
Q ss_pred EEEEEEEeecCCC-CC---CCeeEEEeeeCCCcc--cceecCcccCCCCCcceEEeEEEEEE
Q psy7273 164 QFRITVLQAVGIS-TE---YSDIFCQFNFLHRHD--EAFSTEPVKNTGKGTPLGFYHIQNIT 219 (413)
Q Consensus 164 tf~V~I~~a~Glp-~~---~s~VfcQy~f~~~~e--~~~st~p~~~~~~~~~~~F~h~~~~~ 219 (413)
.+.|+|++|.||+ .+ .+|.||...+.+... ...-|..+.++ ....|+.+..|.
T Consensus 17 ~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t---~nP~wne~f~f~ 75 (125)
T cd04031 17 QLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKT---LNPEWNQTFEYS 75 (125)
T ss_pred EEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCC---CCCccccEEEEc
Confidence 4889999999998 33 467999998875322 33445554432 466777666664
No 62
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=29.72 E-value=49 Score=22.10 Aligned_cols=27 Identities=26% Similarity=0.430 Sum_probs=19.6
Q ss_pred CCcHHHHHHHHHHHHhcccccccchHH
Q psy7273 24 TWTEREFALAAWAFRKWKYHQFTSLRD 50 (413)
Q Consensus 24 ~wt~~e~~lar~~~~kWk~~~~~sLrE 50 (413)
.||++|.+++..++.+.-...+..+++
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~ 27 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGKNNWEKIAK 27 (45)
T ss_pred CCCHHHHHHHHHHHHHHCcCCHHHHHh
Confidence 499999999999999765433333333
No 63
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=29.40 E-value=1.5e+02 Score=25.30 Aligned_cols=54 Identities=17% Similarity=0.295 Sum_probs=35.3
Q ss_pred EEEEEEEeecCCCC---CCCeeEEEeeeCCCcccce--ecCcccCCCCCcceEEeEEEEEEE
Q psy7273 164 QFRITVLQAVGIST---EYSDIFCQFNFLHRHDEAF--STEPVKNTGKGTPLGFYHIQNITV 220 (413)
Q Consensus 164 tf~V~I~~a~Glp~---~~s~VfcQy~f~~~~e~~~--st~p~~~~~~~~~~~F~h~~~~~v 220 (413)
...|+|++|.+|+. ..+|-||...+........ .|....+ .....|+.+..|.+
T Consensus 13 ~L~V~Vi~ar~L~~~~~g~~dpYVkv~l~p~~~~~~~~kT~v~~~---t~~P~~nE~F~f~v 71 (119)
T cd08685 13 KLTLHVLEAKGLRSTNSGTCNSYVKISLSPDKEVRFRQKTSTVPD---SANPLFHETFSFDV 71 (119)
T ss_pred EEEEEEEEEECCCCCCCCCCCeeEEEEEEeCCCCcceEeCccccC---CCCCccccEEEEEc
Confidence 57899999999983 3467999988875433322 3434332 24667777666654
No 64
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=28.78 E-value=1.6e+02 Score=24.59 Aligned_cols=54 Identities=15% Similarity=0.225 Sum_probs=34.0
Q ss_pred EEEEEEEEeecCCC-CC---CCeeEEEeeeCCCcccceecCcccCCCCCcceEEeEEEEEE
Q psy7273 163 LQFRITVLQAVGIS-TE---YSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNIT 219 (413)
Q Consensus 163 ltf~V~I~~a~Glp-~~---~s~VfcQy~f~~~~e~~~st~p~~~~~~~~~~~F~h~~~~~ 219 (413)
-+++|+|.+|.+|+ .+ .+|-||...+.......+.|..+.++ ....|+.+..|.
T Consensus 16 ~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t---~~P~Wne~f~f~ 73 (125)
T cd08386 16 STLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKN---LNPHWNETFLFE 73 (125)
T ss_pred CEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCC---CCCccceeEEEc
Confidence 35789999999998 33 45689998885433334445443322 356666665554
No 65
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=28.09 E-value=1.7e+02 Score=25.01 Aligned_cols=54 Identities=13% Similarity=0.151 Sum_probs=35.7
Q ss_pred EEEEEEEeecCCC-CC--CCeeEEEeeeCCCcccc--eecCcccCCCCCcceEEeEEEEEEE
Q psy7273 164 QFRITVLQAVGIS-TE--YSDIFCQFNFLHRHDEA--FSTEPVKNTGKGTPLGFYHIQNITV 220 (413)
Q Consensus 164 tf~V~I~~a~Glp-~~--~s~VfcQy~f~~~~e~~--~st~p~~~~~~~~~~~F~h~~~~~v 220 (413)
+..|+|++|.+|| .+ .+|-||...+....... .-|...++ .....|+.+..|.+
T Consensus 14 ~L~V~Vi~A~~L~~~~~~~~DpyVkv~l~~~~~~~~~~kT~v~~~---~~nP~wnE~F~f~~ 72 (122)
T cd08381 14 TLFVMVMHAKNLPLLDGSDPDPYVKTYLLPDPQKTTKRKTKVVRK---TRNPTFNEMLVYDG 72 (122)
T ss_pred EEEEEEEEeeCCCCCCCCCCCCEEEEEEeeCCccCCceeCCccCC---CCCCCcccEEEEec
Confidence 4788999999999 33 56799999887543322 34544442 24677877666654
No 66
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=27.98 E-value=1.4e+02 Score=24.90 Aligned_cols=56 Identities=18% Similarity=0.257 Sum_probs=33.7
Q ss_pred EEEEEEEEeecCCC-CC-----CCeeEEEeeeCCCcc---cceecCcccCCCCCcceEEeEEEEEEE
Q psy7273 163 LQFRITVLQAVGIS-TE-----YSDIFCQFNFLHRHD---EAFSTEPVKNTGKGTPLGFYHIQNITV 220 (413)
Q Consensus 163 ltf~V~I~~a~Glp-~~-----~s~VfcQy~f~~~~e---~~~st~p~~~~~~~~~~~F~h~~~~~v 220 (413)
...+|+|.+|.+|| .+ ..+.||...+.+... ..+.|....++ .....|+.+..|.+
T Consensus 2 ~~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~--~~~P~w~e~f~f~~ 66 (128)
T cd00275 2 LTLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNN--GFNPVWNETFEFDV 66 (128)
T ss_pred eEEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCC--CcCCccCCcEEEEE
Confidence 57899999999998 33 345899988865332 22344332211 12455665555555
No 67
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=27.78 E-value=1.4e+02 Score=25.61 Aligned_cols=54 Identities=17% Similarity=0.182 Sum_probs=35.4
Q ss_pred EEEEEEEeecCCC-CC---CCeeEEEeeeCCCcccce--ecCcccCCCCCcceEEeEEEEEEE
Q psy7273 164 QFRITVLQAVGIS-TE---YSDIFCQFNFLHRHDEAF--STEPVKNTGKGTPLGFYHIQNITV 220 (413)
Q Consensus 164 tf~V~I~~a~Glp-~~---~s~VfcQy~f~~~~e~~~--st~p~~~~~~~~~~~F~h~~~~~v 220 (413)
++.|+|++|.+|+ .+ .+|-||...+.+...... -|...+++ ....|+.+..|.+
T Consensus 16 ~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t---~nP~w~e~F~f~v 75 (136)
T cd08404 16 RLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCT---LNPVFNESFVFDI 75 (136)
T ss_pred eEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCC---CCCccCceEEEEC
Confidence 5778999999998 43 467999998865433322 34333322 3566888777765
No 68
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=26.15 E-value=2.3e+02 Score=25.70 Aligned_cols=55 Identities=18% Similarity=0.127 Sum_probs=36.0
Q ss_pred EEEEEEEEeecCCC-CC---CCeeEEEeeeCCCc--ccceecCcccCCCCCcceEEeEEEEEEE
Q psy7273 163 LQFRITVLQAVGIS-TE---YSDIFCQFNFLHRH--DEAFSTEPVKNTGKGTPLGFYHIQNITV 220 (413)
Q Consensus 163 ltf~V~I~~a~Glp-~~---~s~VfcQy~f~~~~--e~~~st~p~~~~~~~~~~~F~h~~~~~v 220 (413)
=...|+|.+|.||| .+ .+|-||...+.... .....|..+.++ ....|+.+..|.+
T Consensus 27 g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t---~nP~WnE~f~f~~ 87 (162)
T cd04020 27 GELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKS---VNPVWNHTFVYDG 87 (162)
T ss_pred ceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCC---CCCCCCCEEEEec
Confidence 34889999999999 33 56799998775321 234556554432 4667777666653
No 69
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=25.82 E-value=1.4e+02 Score=25.09 Aligned_cols=53 Identities=13% Similarity=0.208 Sum_probs=32.9
Q ss_pred EEEEEEEeecCCC-CC-C--CeeEEEeeeCCCcccceecCcccCCCCCcceEEeEEEEEEE
Q psy7273 164 QFRITVLQAVGIS-TE-Y--SDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNITV 220 (413)
Q Consensus 164 tf~V~I~~a~Glp-~~-~--s~VfcQy~f~~~~e~~~st~p~~~~~~~~~~~F~h~~~~~v 220 (413)
+++|+|++|.+|+ .+ + +|.||+..+.+ ...+.|....+ .+....|+....|.+
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~--~~~~~T~~~~~--~~~~P~Wne~f~f~v 57 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDP--SHKQSTPVDRD--GGTNPTWNETLRFPL 57 (125)
T ss_pred CEEEEEEEcccCCCCCcccCCceEEEEEECC--CcccccccccC--CCCCCCCCCEEEEEc
Confidence 4789999999999 44 2 35999998875 22344433221 124566666544444
No 70
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=25.77 E-value=1.9e+02 Score=24.28 Aligned_cols=50 Identities=18% Similarity=0.216 Sum_probs=31.7
Q ss_pred EEEEEEeecCCCC-C------C-CeeEEEeeeCCCcccceecCcccCCCCCcceEEeEEEEEEE
Q psy7273 165 FRITVLQAVGIST-E------Y-SDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNITV 220 (413)
Q Consensus 165 f~V~I~~a~Glp~-~------~-s~VfcQy~f~~~~e~~~st~p~~~~~~~~~~~F~h~~~~~v 220 (413)
..|+|.+|.+||. + + +|-||.+.+-.+ .+-|..+.++ ....|+....|.+
T Consensus 3 l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~---~~kT~v~~~t---~nPvWne~f~f~v 60 (108)
T cd04039 3 VFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRR---VFRTSWRRHT---LNPVFNERLAFEV 60 (108)
T ss_pred EEEEEEeeeCCCCccccCCCCCccCceEEEEECCE---eEeeeeecCC---CCCcccceEEEEE
Confidence 5799999999994 2 2 578999887432 4555544422 3556665544443
No 71
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=25.15 E-value=1.5e+02 Score=25.19 Aligned_cols=50 Identities=12% Similarity=0.135 Sum_probs=32.9
Q ss_pred EEEEEEeecCCC-CC---CCeeEEEeeeCCCcccceecCcccCCCCCcceEEeEEEEEEE
Q psy7273 165 FRITVLQAVGIS-TE---YSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNITV 220 (413)
Q Consensus 165 f~V~I~~a~Glp-~~---~s~VfcQy~f~~~~e~~~st~p~~~~~~~~~~~F~h~~~~~v 220 (413)
.+|+|++|.+|+ .+ .+|.||...+.++ ...|..+.+ .....|+....|.+
T Consensus 2 L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~---~~rT~v~~~---t~nP~Wne~f~f~~ 55 (127)
T cd04022 2 LVVEVVDAQDLMPKDGQGSSSAYVELDFDGQ---KKRTRTKPK---DLNPVWNEKLVFNV 55 (127)
T ss_pred eEEEEEEeeCCCCCCCCCCcCcEEEEEECCE---EecceeEcC---CCCCccceEEEEEc
Confidence 689999999998 33 4679999887643 233433332 23667776666655
No 72
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=24.20 E-value=2.8e+02 Score=25.18 Aligned_cols=30 Identities=23% Similarity=0.623 Sum_probs=24.4
Q ss_pred CeEEEEEEEEeecCCC-CC---CCeeEEEeeeCC
Q psy7273 161 TELQFRITVLQAVGIS-TE---YSDIFCQFNFLH 190 (413)
Q Consensus 161 ~~ltf~V~I~~a~Glp-~~---~s~VfcQy~f~~ 190 (413)
....++|+|.+|.||+ .+ .+|-||...+..
T Consensus 26 ~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~ 59 (153)
T cd08676 26 PIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVP 59 (153)
T ss_pred CeEEEEEEEEeccCCcccCCCCCCCceEEEEEcc
Confidence 4788999999999997 33 577999988753
No 73
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=23.74 E-value=1.7e+02 Score=25.27 Aligned_cols=50 Identities=26% Similarity=0.344 Sum_probs=34.0
Q ss_pred EEEEEEEeecCCC-CC---CCeeEEEeeeCCCcccceecCcccCCCCCcceEEeEEEEEE
Q psy7273 164 QFRITVLQAVGIS-TE---YSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNIT 219 (413)
Q Consensus 164 tf~V~I~~a~Glp-~~---~s~VfcQy~f~~~~e~~~st~p~~~~~~~~~~~F~h~~~~~ 219 (413)
.++|+|.+|.+|| .+ .+|-||...+.+. ...|..++++ ....|+.+..|.
T Consensus 2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~---~~kT~v~~~t---~nP~Wne~~~f~ 55 (135)
T cd04017 2 QLRAYIYQARDLLAADKSGLSDPFARVSFLNQ---SQETEVIKET---LSPTWDQTLIFD 55 (135)
T ss_pred EEEEEEEEeecCcCCCCCCCCCCEEEEEECCe---eeEeeeEcCC---CCCccCcEEEEe
Confidence 5899999999998 34 4679999888643 3445444422 356677766665
No 74
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=23.50 E-value=2.2e+02 Score=24.73 Aligned_cols=54 Identities=13% Similarity=0.091 Sum_probs=35.8
Q ss_pred EEEEEEEeecCCC-C----CCCeeEEEeeeCCCcccc--eecCcccCCCCCcceEEeEEEEEEE
Q psy7273 164 QFRITVLQAVGIS-T----EYSDIFCQFNFLHRHDEA--FSTEPVKNTGKGTPLGFYHIQNITV 220 (413)
Q Consensus 164 tf~V~I~~a~Glp-~----~~s~VfcQy~f~~~~e~~--~st~p~~~~~~~~~~~F~h~~~~~v 220 (413)
...|+|++|.+|+ . ..+|-||...+....... .-|.... +.....|+.+..|.+
T Consensus 16 ~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~---~t~nPvfNE~F~f~v 76 (128)
T cd08392 16 CLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKK---GTVNPVFNETLKYVV 76 (128)
T ss_pred EEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeeccccc---CCCCCccceEEEEEc
Confidence 5778999999998 3 345799999887543322 2343333 235777888777765
No 75
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=23.20 E-value=4.6e+02 Score=22.11 Aligned_cols=61 Identities=20% Similarity=0.306 Sum_probs=37.7
Q ss_pred EEEEEeecCCCCC--CCeeEEEeeeCCCcccceecCcccCCCCCcceEEeEEEEEEEecCHhHHHHhhcCCEEEe
Q psy7273 166 RITVLQAVGISTE--YSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNITVPVSKSFIEYLKTQPLVFE 238 (413)
Q Consensus 166 ~V~I~~a~Glp~~--~s~VfcQy~f~~~~e~~~st~p~~~~~~~~~~~F~h~~~~~v~vTe~fi~~l~~~~l~iE 238 (413)
.|+|++|.|||.. -+|.||...+.. ....+.|+...++ ....|+....|.+ ++ .+..|.|+
T Consensus 2 ~v~v~~A~~L~~~~g~~dpyv~v~~~~-~~~~~kT~v~~~t---~nP~Wne~f~f~~--~~------~~~~l~~~ 64 (126)
T cd08678 2 LVKNIKANGLSEAAGSSNPYCVLEMDE-PPQKYQSSTQKNT---SNPFWDEHFLFEL--SP------NSKELLFE 64 (126)
T ss_pred EEEEEEecCCCCCCCCcCCEEEEEECC-CCcEEEeEEEecC---CCCccCceEEEEe--CC------CCCEEEEE
Confidence 5899999999853 356899888742 2233555554432 3566666665555 32 24567777
No 76
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=21.84 E-value=2.2e+02 Score=25.53 Aligned_cols=53 Identities=11% Similarity=0.179 Sum_probs=36.6
Q ss_pred EEEEEEeecCCCC--CCCeeEEEeeeCCCcc--cceecCcccCCCCCcceEEeEEEEEEE
Q psy7273 165 FRITVLQAVGIST--EYSDIFCQFNFLHRHD--EAFSTEPVKNTGKGTPLGFYHIQNITV 220 (413)
Q Consensus 165 f~V~I~~a~Glp~--~~s~VfcQy~f~~~~e--~~~st~p~~~~~~~~~~~F~h~~~~~v 220 (413)
.+|+|.+|.+|+. ..+|-||...+.+... ....|....+ .....|+.+..|.+
T Consensus 2 L~V~Vi~ArnL~~~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~---t~nP~wNE~F~F~v 58 (148)
T cd04010 2 LSVRVIECSDLALKNGTCDPYASVTLIYSNKKQDTKRTKVKKK---TNNPQFDEAFYFDV 58 (148)
T ss_pred EEEEEEeCcCCCCCCCCCCceEEEEEeCCcccCcccCCccEeC---CCCCccceEEEEEE
Confidence 5799999999984 3678999998876322 2334433332 24677888877777
No 77
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=21.80 E-value=2.4e+02 Score=24.35 Aligned_cols=54 Identities=17% Similarity=0.219 Sum_probs=35.1
Q ss_pred EEEEEEEeecCCC-CC---CCeeEEEeeeCCCc--ccceecCcccCCCCCcceEEeEEEEEEE
Q psy7273 164 QFRITVLQAVGIS-TE---YSDIFCQFNFLHRH--DEAFSTEPVKNTGKGTPLGFYHIQNITV 220 (413)
Q Consensus 164 tf~V~I~~a~Glp-~~---~s~VfcQy~f~~~~--e~~~st~p~~~~~~~~~~~F~h~~~~~v 220 (413)
+++|+|++|.+|+ .+ .+|-||...+.+.. .....|..++++ ....|+.+..|.+
T Consensus 15 ~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t---~nP~wnE~F~f~i 74 (135)
T cd08410 15 RLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGT---IDPFYNESFSFKV 74 (135)
T ss_pred eEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCC---CCCccceeEEEeC
Confidence 4789999999998 33 46789988764321 122344443332 4668888877776
No 78
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=21.31 E-value=2.4e+02 Score=25.20 Aligned_cols=51 Identities=14% Similarity=0.305 Sum_probs=33.0
Q ss_pred EEEEEEeecCCC-CC---CCeeEEEeeeCCCcccceecCcccCCCCCcceEEeEEEEEEE
Q psy7273 165 FRITVLQAVGIS-TE---YSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNITV 220 (413)
Q Consensus 165 f~V~I~~a~Glp-~~---~s~VfcQy~f~~~~e~~~st~p~~~~~~~~~~~F~h~~~~~v 220 (413)
.+|+|.+|.+|+ .+ .+|-||...+.++ ...|....++ .....++.+..|.+
T Consensus 2 L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~---~~kTk~~~~~--t~nP~WNE~F~f~v 56 (150)
T cd04019 2 LRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQ---VLRTRPSQTR--NGNPSWNEELMFVA 56 (150)
T ss_pred EEEEEEEeECCCCCCCCCCCCeEEEEEECCE---EeeeEeccCC--CCCCcccCcEEEEe
Confidence 579999999997 34 5679999998763 3333332211 23566776655655
No 79
>PF05688 DUF824: Salmonella repeat of unknown function (DUF824); InterPro: IPR008542 This family consists of a series of repeated sequences (of around 180 residues) which are found in Salmonella typhimurium, Salmonella typhi and Escherichia coli. These repeats are almost always found with this entry. The repeats are associated with RatA and RatB, the coding sequences of which are found in the pathogeneicity island of Salmonella. The sequences may be determinants of pathogenicity [, ].
Probab=21.26 E-value=1.3e+02 Score=22.53 Aligned_cols=25 Identities=20% Similarity=0.250 Sum_probs=21.4
Q ss_pred CCCCCeEEEEEEEEeecCCCCCCCe
Q psy7273 157 LSPGTELQFRITVLQAVGISTEYSD 181 (413)
Q Consensus 157 l~~g~~ltf~V~I~~a~Glp~~~s~ 181 (413)
.+.|..++.+|+++++.|-|.-+..
T Consensus 9 aK~Ge~I~ltVt~kda~G~pv~n~~ 33 (47)
T PF05688_consen 9 AKVGETIPLTVTVKDANGNPVPNAP 33 (47)
T ss_pred eecCCeEEEEEEEECCCCCCcCCce
Confidence 4789999999999999999955544
Done!