RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy7273
         (413 letters)



>gnl|CDD|221593 pfam12473, DUF3694, Kinesin protein.  This domain family is found
           in eukaryotes, and is typically between 131 and 151
           amino acids in length. The family is found in
           association with pfam00225, pfam00498. There is a single
           completely conserved residue W that may be functionally
           important.
          Length = 142

 Score =  139 bits (353), Expect = 3e-40
 Identities = 52/134 (38%), Positives = 75/134 (55%), Gaps = 7/134 (5%)

Query: 241 GLFLLHQGIQRRIRLTIVHEQVPEIRWKDVKELVVGRIRNTPEPEMDEDTDSSVLSLGLF 300
           G F L QG+QRRI +T+  E   ++ W+D+  LVVG +R   +   D      VLSL L 
Sbjct: 16  GTFKLRQGLQRRIVVTLKQESGEQLPWEDITRLVVGLVRKAGKQP-DMGLVDPVLSLKLL 74

Query: 301 VGEYLEIPGEDRSMFRFEAAWDSSLHNSPLLNRISAHGEQIFMTISAYLELENCGQPGII 360
            G     P +  +    EA WDSSLHNS LLNR++   E++++T++  + L  C +P   
Sbjct: 75  SG-----PDDGTN-VVIEAQWDSSLHNSLLLNRVTPKKERVYLTLAVDVVLSKCAEPVRF 128

Query: 361 TKDLSLVIYGRDAR 374
           +KDL + IY R  R
Sbjct: 129 SKDLCVQIYSRSER 142


>gnl|CDD|236093 PRK07773, PRK07773, replicative DNA helicase; Validated.
          Length = 886

 Score = 30.5 bits (69), Expect = 2.0
 Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 4/66 (6%)

Query: 242 LFLLHQGIQRRIRLTIVHEQVPEIRWKDVKELVVG-RI---RNTPEPEMDEDTDSSVLSL 297
           +F L     R IR T  H  +    WK + EL VG R+   R  P P+    T++ +  L
Sbjct: 453 VFRLRTRSGREIRATANHPFLTFEGWKRLDELKVGDRLALPRRVPSPDTQRMTEAELALL 512

Query: 298 GLFVGE 303
           G  +G+
Sbjct: 513 GHLIGD 518


>gnl|CDD|225474 COG2922, Smg, Uncharacterized protein conserved in bacteria
           [Function unknown].
          Length = 157

 Score = 27.8 bits (62), Expect = 6.2
 Identities = 25/117 (21%), Positives = 38/117 (32%), Gaps = 37/117 (31%)

Query: 196 FSTEPVKNTGKGTPLGFYHIQNITVPVSKSFIEYLKTQPLVFECRG--LFLLHQGIQRRI 253
              EP  +      L  Y  +              +   L  ECRG  LFL    +    
Sbjct: 56  GLAEPADSGSDPLALRIYTPE--------------ECDRLDAECRGFLLFLEQIQV---- 97

Query: 254 RLTIVHEQVPEIRWKDVKELVVGRIRNTPEPEMDEDTDSSVLSLGLFVGEYLEIPGE 310
            L +           + +E+V+ R+      E+D D    V+ + LF      IPG 
Sbjct: 98  -LNL-----------ETREMVIERVMALDTDEIDLDDLKWVVLMVLF-----NIPGC 137


>gnl|CDD|181142 PRK07846, PRK07846, mycothione reductase; Reviewed.
          Length = 451

 Score = 28.0 bits (63), Expect = 9.7
 Identities = 8/21 (38%), Positives = 12/21 (57%)

Query: 258 VHEQVPEIRWKDVKELVVGRI 278
           V  ++  +RW D+   V GRI
Sbjct: 66  VDAELDGVRWPDIVSRVFGRI 86


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.317    0.133    0.398 

Gapped
Lambda     K      H
   0.267   0.0698    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 21,011,171
Number of extensions: 2009499
Number of successful extensions: 1447
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1445
Number of HSP's successfully gapped: 9
Length of query: 413
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 314
Effective length of database: 6,546,556
Effective search space: 2055618584
Effective search space used: 2055618584
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.0 bits)