RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7273
(413 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.1 bits (101), Expect = 2e-04
Identities = 64/459 (13%), Positives = 123/459 (26%), Gaps = 191/459 (41%)
Query: 44 QFTSLRDDLWGNAIFLKEANAISVELKKKTRSVMVTAGEVI---------VPSVLTSRKR 94
+F L GN I +A++ +L ++ + +V E+I +
Sbjct: 90 EFE--NCYLEGNDI-----HALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSN 142
Query: 95 SLLHTSAPA---------------LSCSSEL-PCYKPSEYPPNTRTY----------SAS 128
S L + EL Y+ Y
Sbjct: 143 SALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQ--TYHVLVGDLIKFSAETLSELIR 200
Query: 129 SNSECDGDSGRGDSSICSDVKE--EEP---PPH-------LS-PGTELQFRITVLQAVGI 175
+ + + +G ++ E E P P +S P I V+Q
Sbjct: 201 TTLDAEKVFTQG-----LNILEWLENPSNTPDKDYLLSIPISCPL------IGVIQ---- 245
Query: 176 STEYSDIFCQF-NFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNITVPV----SKSFIEYL 230
+ F+ +++ KG G H Q + V + S+ +
Sbjct: 246 -------LAHYVVTAKLLG--FTPGELRSYLKGA-TG--HSQGLVTAVAIAETDSWESFF 293
Query: 231 KTQPLVFECRGLFLLHQGIQRRIRLTIVHEQVPEIRWKDVKELVVGRIRNTPEPEMDEDT 290
+ L G++ +E P + P + ED+
Sbjct: 294 VSVRKAIT----VLFFIGVR-------CYEAYP---------------NTSLPPSILEDS 327
Query: 291 D-------SSVLSL-GL---FVGEYLE-----IPGEDR-SMFRFEAAWDSSLHNSP---- 329
S +LS+ L V +Y+ +P + + SL N
Sbjct: 328 LENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEI---------SLVNGAKNLV 378
Query: 330 -------L------LNRISA--HGEQ--I------------FMTISA-----YLE----- 350
L L + A +Q I F+ +++ L
Sbjct: 379 VSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDL 438
Query: 351 -LENCGQPGII--TKDLSLVIY----GRDARTAPRTLKH 382
++ + + KD+ + +Y G D R ++
Sbjct: 439 INKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISE 477
Score = 36.6 bits (84), Expect = 0.017
Identities = 31/171 (18%), Positives = 48/171 (28%), Gaps = 54/171 (31%)
Query: 232 TQPLV-----FECRGLFL----LH-QGIQRRIRLTIVHEQVPEIRWKD-----VKELV-- 274
T+PL E L Q + + + + E D ELV
Sbjct: 6 TRPLTLSHGSLEHV--LLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGK 63
Query: 275 -VGRIRNTPEPEMDEDTDSSVLSLGL--FVGEYL----------EIPGED-------RSM 314
+G + + EP D VL+L L F YL ++ E+ + +
Sbjct: 64 FLGYVSSLVEPSKVGQFDQ-VLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKEL 122
Query: 315 FR--FEAAW-----DSSLHNSPLLNRISAHGEQIFM------TISAYL-EL 351
+ A NS L + Q+ Y EL
Sbjct: 123 IKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEEL 173
Score = 34.3 bits (78), Expect = 0.085
Identities = 52/408 (12%), Positives = 95/408 (23%), Gaps = 166/408 (40%)
Query: 4 SLYSSYTP--DDFNTEEDIFECTWTEREFALAAWAFRKWKYHQFTSLRDDL--W------ 53
LY +Y D I T E K ++ W
Sbjct: 175 DLYQTYHVLVGDL-----IKFSAETLSELIRTTLDAEKVFTQGL-----NILEWLENPSN 224
Query: 54 -GNAIFLKEANAISV-----------------------ELKKKTRSVMVTAGEVIVPSVL 89
+ +L IS EL+ + + ++ +
Sbjct: 225 TPDKDYLLSI-PISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAI 283
Query: 90 TSRK--RSLLHTSAPALSCSSELPCYKPSEYPPNTRTYSASSNSECDGDSGRGDSSICSD 147
S + A++ + YP + S +S +
Sbjct: 284 AETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENN------------ 331
Query: 148 VKEEEPPPHLS----PGTELQFRITVL-------QAVGISTEYSDIFCQFNFLHRHDEAF 196
E P P LS ++Q + + V IS
Sbjct: 332 --EGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEIS-------------------- 369
Query: 197 STEPVKNTGK-----GTPLGFY----HIQNITVP--VSKSFIEYLKTQPLVFECRGLFL- 244
+ N K G P Y ++ P + +S I + + + F R FL
Sbjct: 370 ----LVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKL-KFSNR--FLP 422
Query: 245 ----LHQGIQRRIRLTIVHEQVPEIRWKDVKELVVGRIRNTPEPEMDEDTDSSVLSLGLF 300
H + L + + + D+ + V F
Sbjct: 423 VASPFHSHL-----LVPASDLINK----DLVKNNV-----------------------SF 450
Query: 301 VGEYLEIP------GED-------------RSMFRFEAAWDSSLHNSP 329
+ ++IP G D + R W+++
Sbjct: 451 NAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKA 498
Score = 31.2 bits (70), Expect = 0.83
Identities = 22/138 (15%), Positives = 42/138 (30%), Gaps = 32/138 (23%)
Query: 247 QGIQRR---IRLTIVHEQVPEIR--WKDVKEL--------VVGRIRNTPEPEMDEDTDSS 293
QG Q + + L ++ + W ++ + N P + +
Sbjct: 1624 QGSQEQGMGMDL---YKTSKAAQDVWNRADNHFKDTYGFSILDIVINNP-------VNLT 1673
Query: 294 VLSLGLFVGEYLEIPGEDRSMFRFEAAWDSSLHNSPLLNRISAHGEQ-IFMTISAYLEL- 351
+ F GE + E+ S FE D L + I+ H F + L
Sbjct: 1674 I----HFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSAT 1729
Query: 352 ENCGQPGIITKDLSLVIY 369
+ QP + + +
Sbjct: 1730 QFT-QPALTL--MEKAAF 1744
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 41.4 bits (96), Expect = 5e-04
Identities = 61/484 (12%), Positives = 129/484 (26%), Gaps = 174/484 (35%)
Query: 1 MTMSLYSSYTPDDFNTEEDIFECTWTEREFALAAWAFRKWKYHQF-TSLR--DDLWGNAI 57
M L P+ + + D R ++ A R K + L ++
Sbjct: 201 MLQKLLYQIDPN-WTSRSDH-SSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKA 258
Query: 58 FLKEANAISVELKKKTRSVMVTAGEVIVPSVLTSRKRSLLHTSAPALSCSSELPCYKPSE 117
+ A L K +LT+R + + + A + L + +
Sbjct: 259 W--NA----FNLSCKI--------------LLTTRFKQVTDFLSAATTTHISLDHHSMTL 298
Query: 118 YPPNTRTYSASSNSECDGDSGRGDSSICSDVKEEEPPP---HLSPGTELQFRITVLQAVG 174
P ++ D + ++ P +P R+++
Sbjct: 299 TPDEVKSLLLK----------------YLDCRPQDLPREVLTTNP-----RRLSI----- 332
Query: 175 ISTEYSDIFCQF-NFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNITVPVSKSFIEYLKTQ 233
I+ D + N+ H + + +T + +S + L+
Sbjct: 333 IAESIRDGLATWDNWKHVNCDKLTT-----------------------IIESSLNVLEPA 369
Query: 234 PLVFECRGLFLLHQGIQRRIRLTI----VH--EQVPEIRWKDVKELVVGRIRNTPEPEMD 287
E R +F RL++ H + + W DV + + ++
Sbjct: 370 ----EYRKMFD---------RLSVFPPSAHIPTILLSLIWFDVIK-------SDVMVVVN 409
Query: 288 EDTDSSVLSLGLFVGEYLEIPGEDRSMFRFEAAWDSSLHNSPLLNR-------------- 333
+ S++ IP + + + + +LH S +++
Sbjct: 410 KLHKYSLVEKQPKESTI-SIPSIYLEL-KVKLENEYALHRS-IVDHYNIPKTFDSDDLIP 466
Query: 334 ----------ISAH------GEQIFMTISAYLELE-----------NCGQPGIITKDLS- 365
I H E++ + +L+ G I L
Sbjct: 467 PYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQ 526
Query: 366 LVIYGR----DARTAPRTLK-----------HLFSSSYKN-------NEANRLTGVYEMA 403
L Y + R + +L S Y + E ++E A
Sbjct: 527 LKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDE---AIFEEA 583
Query: 404 LKRA 407
K+
Sbjct: 584 HKQV 587
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.5 bits (70), Expect = 0.23
Identities = 10/43 (23%), Positives = 15/43 (34%), Gaps = 17/43 (39%)
Query: 68 ELKKKTRSVMVTAGEVIVPSVLTSRKRSLLHTSAPALSCSSEL 110
LKK S+ + A SAPAL+ + +
Sbjct: 21 ALKKLQASLKLYA-----DD------------SAPALAIKATM 46
Score = 26.8 bits (58), Expect = 8.8
Identities = 8/18 (44%), Positives = 10/18 (55%), Gaps = 4/18 (22%)
Query: 362 KDL--SLVIYGRDARTAP 377
K L SL +Y D +AP
Sbjct: 23 KKLQASLKLYADD--SAP 38
>2zjr_W 50S ribosomal protein L30; ribosome, large ribosomal subunit,
ribonucleoprotein, RNA-binding, rRNA-binding,
tRNA-binding, methylation; 2.91A {Deinococcus
radiodurans} SCOP: d.59.1.1 PDB: 1nwx_X* 1nwy_X* 1pnu_X
1pny_X 1sm1_X* 1vor_Z 1vou_Z 1vow_Z 1voy_Z 1vp0_Z
1xbp_X* 2zjp_W* 2zjq_W 1nkw_X 3cf5_W* 3dll_W* 3pio_W*
3pip_W*
Length = 55
Score = 26.3 bits (59), Expect = 3.1
Identities = 9/43 (20%), Positives = 14/43 (32%), Gaps = 8/43 (18%)
Query: 224 KSFIEYLKTQPLVFECRGLFLLHQGIQRRIRLTIVHEQVPEIR 266
+S I Q + GL R+I + P +R
Sbjct: 7 RSVIGRPGNQVKTVQALGL--------RKIGDSREVSDTPAVR 41
>3r8s_Z 50S ribosomal protein L30; protein biosynthesis, RNA, tRNA,
transfer RNA, 23S ribosomal subunit, ribosome recycling
factor, RRF, ribosome; 3.00A {Escherichia coli} PDB:
1p85_X 1p86_X 2awb_Y 2aw4_Y 2i2v_Z 2j28_Y 2i2t_Z*
2qao_Y* 2qba_Y* 2qbc_Y* 2qbe_Y 2qbg_Y 2qbi_Y* 2qbk_Y*
2qov_Y 2qox_Y 2qoz_Y* 2qp1_Y* 2rdo_Y 2vhm_Y ...
Length = 58
Score = 26.3 bits (59), Expect = 3.1
Identities = 13/43 (30%), Positives = 15/43 (34%), Gaps = 8/43 (18%)
Query: 224 KSFIEYLKTQPLVFECRGLFLLHQGIQRRIRLTIVHEQVPEIR 266
+S I L GL RRI T+ E P IR
Sbjct: 10 RSAIGRLPKHKATLLGLGL--------RRIGHTVEREDTPAIR 44
>1bxy_A Protein (ribosomal protein L30); X-RAY crystallography,
conformational changes, ribosome; 1.90A {Thermus
thermophilus} SCOP: d.59.1.1 PDB: 1giy_X 1ml5_x* 1vsa_X
1vsp_X 1yl3_X 2b66_3 2b9n_3 2b9p_3 2hgj_2 2hgq_2 2hgu_2
2j01_3 2j03_3 2jl6_3 2jl8_3 2v47_3 2v49_3 2wdi_3 2wdj_3
2wdl_3 ...
Length = 60
Score = 26.3 bits (59), Expect = 3.3
Identities = 15/43 (34%), Positives = 18/43 (41%), Gaps = 8/43 (18%)
Query: 224 KSFIEYLKTQPLVFECRGLFLLHQGIQRRIRLTIVHEQVPEIR 266
KS I Y K Q + GL RR++ V E P IR
Sbjct: 10 KSPIGYPKDQKAALKALGL--------RRLQQERVLEDTPAIR 44
>3l4g_B Phenylalanyl-tRNA synthetase beta chain; aminoacylation,
tRNA-binding, DNA-binding domain, four-helix
acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A
{Homo sapiens}
Length = 589
Score = 28.5 bits (64), Expect = 5.5
Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 278 IRNTPEPEMDEDTDSSVLSL-GLFVGEYLEIPGEDRSMFRFEAAWD 322
I N P + D++ VLS+ + G++ I R++F D
Sbjct: 214 IENKPLYPVIYDSNGVVLSMPPIINGDHSRITVNTRNIFIECTGTD 259
>2crm_A Fibronectin type-III domain containing protein 3A; structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 120
Score = 27.0 bits (60), Expect = 5.9
Identities = 7/27 (25%), Positives = 12/27 (44%), Gaps = 1/27 (3%)
Query: 156 HLSPGTELQFRITVLQAVGISTEYSDI 182
L+PG + R+ + G S S+
Sbjct: 81 RLNPGCFYRLRVYCISDGGQS-AVSES 106
>1hgx_A HGXPRTASE, hypoxanthine-guanine-xanthine phosphoribosyltransferase;
glycosyltransferase, purine salvage, transferase
(glycosyltransferase); HET: 5GP; 1.90A {Tritrichomonas
foetus} SCOP: c.61.1.1
Length = 183
Score = 27.4 bits (62), Expect = 5.9
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 330 LLNRISAHGEQIFMTISAYLELENCGQPGIITKDLSLVIYGRD 372
LL + E ++ S+Y ++ G I KDL I GR
Sbjct: 56 LLKHLDFQLEPDYIICSSYSGTKSTGNLTIS-KDLKTNIEGRH 97
>1z7g_A HGPRT, HGPRTASE, hypoxanthine-guanine phosphoribosyltransferase;
flexibility, trans CIS peptide bond isomerization,
nucleotide binding; 1.90A {Homo sapiens} SCOP: c.61.1.1
PDB: 1hmp_A* 1bzy_A 3gep_A* 3ggc_A* 3ggj_A* 1d6n_A*
2vfa_A*
Length = 217
Score = 27.5 bits (62), Expect = 6.1
Identities = 6/31 (19%), Positives = 15/31 (48%)
Query: 342 FMTISAYLELENCGQPGIITKDLSLVIYGRD 372
F+ + +Y ++ G +I D + G++
Sbjct: 98 FIRLKSYCNDQSTGDIKVIGGDDLSTLTGKN 128
>1wfu_A Unnamed protein product; FN3 domain, similar to 1700007B22RIK
protein, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: b.1.2.1
Length = 120
Score = 26.8 bits (59), Expect = 6.8
Identities = 10/27 (37%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 156 HLSPGTELQFRITVLQAVGISTEYSDI 182
L P T +FR+ V G EYS +
Sbjct: 81 GLEPRTLYKFRLKVTSPSGEY-EYSPV 106
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.133 0.398
Gapped
Lambda K H
0.267 0.0838 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,277,401
Number of extensions: 368802
Number of successful extensions: 731
Number of sequences better than 10.0: 1
Number of HSP's gapped: 726
Number of HSP's successfully gapped: 19
Length of query: 413
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 317
Effective length of database: 4,021,377
Effective search space: 1274776509
Effective search space used: 1274776509
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (25.9 bits)