RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7273
         (413 letters)



>d2zjrw1 d.59.1.1 (W:1-55) Prokaryotic ribosomal protein L30
           {Deinococcus radiodurans [TaxId: 1299]}
          Length = 55

 Score = 26.8 bits (60), Expect = 0.79
 Identities = 12/54 (22%), Positives = 18/54 (33%), Gaps = 12/54 (22%)

Query: 224 KSFIEYLKTQPLVFECRGLFLLHQGIQRRIRLTIVHEQVPEIR---WKDVKELV 274
           +S I     Q    +  GL        R+I  +      P +R      VK L+
Sbjct: 7   RSVIGRPGNQVKTVQALGL--------RKIGDSREVSDTPAVRGMVKT-VKHLL 51


>d1bxya_ d.59.1.1 (A:) Prokaryotic ribosomal protein L30 {Thermus
           thermophilus [TaxId: 274]}
          Length = 60

 Score = 26.0 bits (58), Expect = 1.6
 Identities = 19/54 (35%), Positives = 22/54 (40%), Gaps = 12/54 (22%)

Query: 224 KSFIEYLKTQPLVFECRGLFLLHQGIQRRIRLTIVHEQVPEIR---WKDVKELV 274
           KS I Y K Q    +  GL        RR++   V E  P IR    K V  LV
Sbjct: 10  KSPIGYPKDQKAALKALGL--------RRLQQERVLEDTPAIRGNVEK-VAHLV 54


>d2gycx1 d.59.1.1 (X:3-58) Prokaryotic ribosomal protein L30
           {Escherichia coli [TaxId: 562]}
          Length = 56

 Score = 25.3 bits (56), Expect = 2.9
 Identities = 15/54 (27%), Positives = 18/54 (33%), Gaps = 12/54 (22%)

Query: 224 KSFIEYLKTQPLVFECRGLFLLHQGIQRRIRLTIVHEQVPEIR---WKDVKELV 274
           +S I  L          GL        RRI  T+  E  P IR      V  +V
Sbjct: 8   RSAIGRLPKHKATLLGLGL--------RRIGHTVEREDTPAIRGMINA-VSFMV 52


>d1k85a_ b.1.2.1 (A:) Fibronectin type III domain from chitinase A1.
           {Bacillus circulans [TaxId: 1397]}
          Length = 88

 Score = 25.5 bits (55), Expect = 4.1
 Identities = 6/26 (23%), Positives = 10/26 (38%)

Query: 157 LSPGTELQFRITVLQAVGISTEYSDI 182
           L+  T   F +    A G  +  S+ 
Sbjct: 58  LAADTSYTFTVKAKDAAGNVSAASNA 83


>d1bpva_ b.1.2.1 (A:) Type I titin module {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 104

 Score = 25.7 bits (55), Expect = 4.6
 Identities = 6/28 (21%), Positives = 11/28 (39%)

Query: 155 PHLSPGTELQFRITVLQAVGISTEYSDI 182
             L+     +FR+    A G  +  S+ 
Sbjct: 65  SGLTEDAAYEFRVIAKNAAGAISPPSEP 92


>d1wisa1 b.1.2.1 (A:8-118) Sidekick 2 {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 111

 Score = 25.7 bits (55), Expect = 5.6
 Identities = 10/27 (37%), Positives = 13/27 (48%), Gaps = 1/27 (3%)

Query: 155 PHLSPGTELQFRITVLQAVGISTEYSD 181
           P L+P T   FR+  +  VG S   S 
Sbjct: 77  PDLNPFTCYSFRMRQVNIVGTS-PPSQ 102


>d1fnaa_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 91

 Score = 24.8 bits (53), Expect = 7.7
 Identities = 6/27 (22%), Positives = 9/27 (33%)

Query: 155 PHLSPGTELQFRITVLQAVGISTEYSD 181
             L PG +    +  +   G S   S 
Sbjct: 55  SGLKPGVDYTITVYAVTGRGDSPASSK 81


>d3d48r2 b.1.2.1 (R:101-204) Prolactin receptor {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 104

 Score = 25.0 bits (53), Expect = 7.9
 Identities = 5/27 (18%), Positives = 10/27 (37%)

Query: 155 PHLSPGTELQFRITVLQAVGISTEYSD 181
             L PG +   ++      G  + +S 
Sbjct: 70  LSLHPGQKYLVQVRCKPDHGYWSAWSP 96


>d2crma1 b.1.2.1 (A:8-114) Fibronectin type-III domain containing
           protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 107

 Score = 25.3 bits (54), Expect = 8.2
 Identities = 10/39 (25%), Positives = 15/39 (38%), Gaps = 1/39 (2%)

Query: 144 ICSDVKEEEPPPHLSPGTELQFRITVLQAVGISTEYSDI 182
           I S    E     L+PG   + R+  +   G S   S+ 
Sbjct: 62  IYSGATREHLCDRLNPGCFYRLRVYCISDGGQS-AVSES 99


>d1x4za1 b.1.2.1 (A:8-115) Brother of CDO precursor (BOC) {Mouse
           (Mus musculus) [TaxId: 10090]}
          Length = 108

 Score = 25.1 bits (54), Expect = 8.9
 Identities = 9/27 (33%), Positives = 12/27 (44%), Gaps = 1/27 (3%)

Query: 155 PHLSPGTELQFRITVLQAVGISTEYSD 181
             L  G   +FR+  L  +G S E S 
Sbjct: 74  TGLEKGISYKFRVRALNMLGES-EPSA 99


>d1v29b_ b.34.4.4 (B:) Cobalt-containing nitrile hydratase {Bacillus
           smithii [TaxId: 1479]}
          Length = 229

 Score = 25.7 bits (56), Expect = 9.8
 Identities = 16/96 (16%), Positives = 27/96 (28%), Gaps = 4/96 (4%)

Query: 24  TWTEREFALAAWAFRKWKYHQFTSLRDDLWGNAIFLKEANAISV-ELKKKTRSVMVTAGE 82
                EF +     R   Y   +     +   A  L E   +   EL+ +T++ M     
Sbjct: 49  MKAFDEFRIGIEKMRPVDYLTSSYYGHWIATVAYNLLETGVLDEKELEDRTQAFMEKPDT 108

Query: 83  VIVP---SVLTSRKRSLLHTSAPALSCSSELPCYKP 115
            I       L       L      +   S  P ++ 
Sbjct: 109 KIQRWENPKLVKVVEKALLEGLSPVREVSSFPRFEV 144


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.133    0.398 

Gapped
Lambda     K      H
   0.267   0.0563    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,537,116
Number of extensions: 71844
Number of successful extensions: 189
Number of sequences better than 10.0: 1
Number of HSP's gapped: 189
Number of HSP's successfully gapped: 17
Length of query: 413
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 325
Effective length of database: 1,199,356
Effective search space: 389790700
Effective search space used: 389790700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.0 bits)