Query psy7275
Match_columns 150
No_of_seqs 231 out of 1061
Neff 5.6
Searched_HMMs 46136
Date Fri Aug 16 22:31:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7275.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7275hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1532|consensus 100.0 3.7E-39 8.1E-44 270.4 13.6 128 1-128 177-305 (366)
2 PF03029 ATP_bind_1: Conserved 99.2 9.4E-12 2E-16 101.9 4.6 83 1-86 152-236 (238)
3 PRK13768 GTPase; Provisional 98.7 6.5E-08 1.4E-12 79.5 9.0 84 3-86 160-246 (253)
4 TIGR00436 era GTP-binding prot 98.6 7.5E-08 1.6E-12 79.2 5.0 106 4-134 106-211 (270)
5 cd01849 YlqF_related_GTPase Yl 98.5 3.4E-07 7.3E-12 69.1 6.8 58 3-86 27-84 (155)
6 cd04139 RalA_RalB RalA/RalB su 98.4 8.6E-07 1.9E-11 65.0 7.2 58 4-86 104-161 (164)
7 PRK00089 era GTPase Era; Revie 98.4 3.3E-07 7.1E-12 75.6 4.9 101 4-129 112-213 (292)
8 TIGR00491 aIF-2 translation in 98.4 7.4E-07 1.6E-11 81.8 7.5 88 3-90 119-219 (590)
9 PF00009 GTP_EFTU: Elongation 98.4 8.9E-07 1.9E-11 68.5 6.1 63 3-86 120-186 (188)
10 cd01888 eIF2_gamma eIF2-gamma 98.4 7.5E-07 1.6E-11 70.2 5.6 26 61-86 173-198 (203)
11 PRK14845 translation initiatio 98.3 2E-06 4.3E-11 83.4 9.0 36 55-90 641-676 (1049)
12 PRK04213 GTP-binding protein; 98.3 1.3E-06 2.9E-11 67.4 6.1 66 4-91 129-196 (201)
13 cd01897 NOG NOG1 is a nucleola 98.3 1.6E-06 3.4E-11 64.4 6.0 55 5-86 113-167 (168)
14 cd01879 FeoB Ferrous iron tran 98.3 1.8E-06 3.8E-11 63.1 6.1 58 3-86 99-156 (158)
15 cd04138 H_N_K_Ras_like H-Ras/N 98.3 2.5E-06 5.4E-11 62.3 6.7 56 4-85 105-160 (162)
16 PF02421 FeoB_N: Ferrous iron 98.3 3.8E-07 8.3E-12 70.9 2.5 54 3-82 103-156 (156)
17 cd01859 MJ1464 MJ1464. This f 98.3 2.1E-06 4.5E-11 64.4 6.3 57 4-87 40-96 (156)
18 COG0532 InfB Translation initi 98.3 1.4E-06 3E-11 78.8 5.9 69 4-91 106-174 (509)
19 cd04160 Arfrp1 Arfrp1 subfamil 98.3 1.1E-06 2.4E-11 65.2 4.1 60 4-84 106-166 (167)
20 cd04171 SelB SelB subfamily. 98.2 3.6E-06 7.8E-11 61.7 6.6 24 61-84 140-163 (164)
21 cd01858 NGP_1 NGP-1. Autoanti 98.2 2.3E-06 4.9E-11 64.6 5.3 55 5-85 39-93 (157)
22 PRK12289 GTPase RsgA; Reviewed 98.2 2E-06 4.4E-11 74.4 5.5 55 3-84 118-172 (352)
23 cd00157 Rho Rho (Ras homology) 98.2 2.1E-06 4.6E-11 63.6 4.9 68 4-84 103-170 (171)
24 cd04175 Rap1 Rap1 subgroup. T 98.2 4E-06 8.8E-11 62.3 6.5 58 4-86 105-162 (164)
25 cd01862 Rab7 Rab7 subfamily. 98.2 4.9E-06 1.1E-10 61.7 6.8 62 4-89 108-169 (172)
26 cd04152 Arl4_Arl7 Arl4/Arl7 su 98.2 2.7E-06 5.8E-11 65.5 5.4 26 62-87 145-170 (183)
27 cd00880 Era_like Era (E. coli 98.2 3.2E-06 6.9E-11 60.0 5.5 61 3-85 102-162 (163)
28 cd01889 SelB_euk SelB subfamil 98.2 5.5E-06 1.2E-10 64.1 7.2 66 4-86 119-185 (192)
29 cd01898 Obg Obg subfamily. Th 98.2 3.9E-06 8.4E-11 62.3 5.8 56 5-85 114-169 (170)
30 cd04157 Arl6 Arl6 subfamily. 98.2 4.2E-06 9.2E-11 61.5 5.8 58 4-84 103-161 (162)
31 cd04147 Ras_dva Ras-dva subfam 98.2 5.9E-06 1.3E-10 64.3 6.7 77 4-104 103-179 (198)
32 cd04145 M_R_Ras_like M-Ras/R-R 98.1 7.7E-06 1.7E-10 60.2 6.7 58 4-86 106-163 (164)
33 cd04136 Rap_like Rap-like subf 98.1 5.7E-06 1.2E-10 60.8 6.0 56 5-85 106-161 (163)
34 PRK15467 ethanolamine utilizat 98.1 7.7E-06 1.7E-10 62.1 6.8 58 5-88 91-148 (158)
35 cd01855 YqeH YqeH. YqeH is an 98.1 7.5E-06 1.6E-10 63.4 6.8 64 4-86 60-124 (190)
36 cd04107 Rab32_Rab38 Rab38/Rab3 98.1 1.1E-05 2.5E-10 62.7 7.8 60 4-87 109-168 (201)
37 smart00173 RAS Ras subfamily o 98.1 9.7E-06 2.1E-10 59.9 7.1 59 4-87 104-162 (164)
38 PRK12298 obgE GTPase CgtA; Rev 98.1 7E-06 1.5E-10 71.8 7.0 69 5-97 275-343 (390)
39 cd04112 Rab26 Rab26 subfamily. 98.1 5.1E-06 1.1E-10 64.2 5.5 64 4-93 105-169 (191)
40 TIGR00157 ribosome small subun 98.1 5.9E-06 1.3E-10 67.7 6.1 54 4-84 66-120 (245)
41 TIGR03594 GTPase_EngA ribosome 98.1 7.2E-06 1.6E-10 70.9 6.8 68 4-92 282-349 (429)
42 cd01887 IF2_eIF5B IF2/eIF5B (i 98.1 6.7E-06 1.5E-10 60.8 5.7 68 3-88 100-167 (168)
43 cd04151 Arl1 Arl1 subfamily. 98.1 3.3E-06 7E-11 62.7 3.8 57 5-84 100-157 (158)
44 cd04132 Rho4_like Rho4-like su 98.1 9.1E-06 2E-10 61.9 6.4 31 63-93 143-173 (187)
45 cd00881 GTP_translation_factor 98.1 7.7E-06 1.7E-10 61.3 5.9 74 4-86 113-186 (189)
46 PRK15494 era GTPase Era; Provi 98.1 3.7E-06 8.1E-11 71.9 4.6 100 4-129 159-258 (339)
47 cd04165 GTPBP1_like GTPBP1-lik 98.1 6.5E-06 1.4E-10 66.6 5.6 77 3-84 136-220 (224)
48 cd04124 RabL2 RabL2 subfamily. 98.1 1.4E-05 3E-10 59.9 7.0 29 61-89 132-160 (161)
49 TIGR02528 EutP ethanolamine ut 98.1 9.7E-06 2.1E-10 59.0 6.0 22 62-83 120-141 (142)
50 cd01890 LepA LepA subfamily. 98.1 1.3E-05 2.8E-10 60.3 6.8 58 4-85 118-175 (179)
51 cd01895 EngA2 EngA2 subfamily. 98.1 1E-05 2.2E-10 59.2 6.1 62 4-85 112-173 (174)
52 TIGR02729 Obg_CgtA Obg family 98.1 1E-05 2.2E-10 69.2 7.0 56 5-86 273-328 (329)
53 cd01893 Miro1 Miro1 subfamily. 98.1 1.5E-05 3.2E-10 59.9 7.0 62 4-86 102-163 (166)
54 PRK04004 translation initiatio 98.1 1.5E-05 3.2E-10 73.1 8.4 35 56-90 187-221 (586)
55 cd04106 Rab23_lke Rab23-like s 98.1 1.4E-05 3E-10 58.9 6.6 56 4-84 105-160 (162)
56 cd01864 Rab19 Rab19 subfamily. 98.1 1.2E-05 2.7E-10 59.8 6.3 58 4-85 107-164 (165)
57 PRK00093 GTP-binding protein D 98.1 1E-05 2.2E-10 70.2 6.7 68 3-92 282-349 (435)
58 cd04119 RJL RJL (RabJ-Like) su 98.1 1.1E-05 2.4E-10 59.2 5.9 58 4-86 109-166 (168)
59 cd01881 Obg_like The Obg-like 98.1 8.4E-06 1.8E-10 60.5 5.3 56 4-84 119-174 (176)
60 cd04163 Era Era subfamily. Er 98.0 1.3E-05 2.9E-10 57.8 6.1 57 4-85 110-167 (168)
61 cd04127 Rab27A Rab27a subfamil 98.0 1.9E-05 4E-10 59.5 7.1 57 5-86 120-176 (180)
62 PTZ00327 eukaryotic translatio 98.0 1E-05 2.2E-10 72.3 6.6 62 5-86 170-232 (460)
63 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 98.0 1.9E-05 4.2E-10 58.7 7.1 58 4-86 106-163 (166)
64 cd04140 ARHI_like ARHI subfami 98.0 1.6E-05 3.4E-10 59.5 6.5 56 4-84 107-162 (165)
65 COG1159 Era GTPase [General fu 98.0 1.6E-05 3.5E-10 67.7 7.3 98 4-125 113-210 (298)
66 PRK12296 obgE GTPase CgtA; Rev 98.0 1.4E-05 2.9E-10 72.4 7.2 60 5-90 284-343 (500)
67 cd04122 Rab14 Rab14 subfamily. 98.0 2.4E-05 5.1E-10 58.5 7.5 58 4-86 106-163 (166)
68 cd04144 Ras2 Ras2 subfamily. 98.0 1.7E-05 3.8E-10 61.2 6.8 58 4-86 105-162 (190)
69 cd01856 YlqF YlqF. Proteins o 98.0 1.6E-05 3.5E-10 60.9 6.4 55 5-86 46-100 (171)
70 cd01868 Rab11_like Rab11-like. 98.0 2.1E-05 4.6E-10 58.3 6.9 56 5-85 108-163 (165)
71 cd04154 Arl2 Arl2 subfamily. 98.0 1.2E-05 2.5E-10 60.8 5.5 57 4-83 114-171 (173)
72 cd01892 Miro2 Miro2 subfamily. 98.0 1.3E-05 2.8E-10 60.9 5.7 58 5-86 108-165 (169)
73 PRK03003 GTP-binding protein D 98.0 2.7E-05 6E-10 69.1 8.6 68 4-93 321-388 (472)
74 TIGR00750 lao LAO/AO transport 98.0 7.4E-05 1.6E-09 62.7 10.7 28 62-89 213-240 (300)
75 cd04142 RRP22 RRP22 subfamily. 98.0 2E-05 4.3E-10 62.1 6.9 60 4-87 115-174 (198)
76 cd04123 Rab21 Rab21 subfamily. 98.0 2.5E-05 5.5E-10 56.9 7.0 56 5-85 105-160 (162)
77 cd00878 Arf_Arl Arf (ADP-ribos 98.0 1.8E-05 3.8E-10 58.3 6.2 60 3-84 98-157 (158)
78 cd01870 RhoA_like RhoA-like su 98.0 2.9E-05 6.4E-10 58.1 7.4 26 61-86 149-174 (175)
79 PRK12299 obgE GTPase CgtA; Rev 98.0 2.6E-05 5.6E-10 67.0 8.0 59 5-88 271-329 (335)
80 cd01865 Rab3 Rab3 subfamily. 98.0 3.2E-05 6.9E-10 57.8 7.5 57 5-86 106-162 (165)
81 PRK12288 GTPase RsgA; Reviewed 98.0 1.7E-05 3.7E-10 68.5 6.8 54 4-84 149-205 (347)
82 cd01894 EngA1 EngA1 subfamily. 98.0 1.8E-05 3.8E-10 57.5 5.9 54 3-85 103-156 (157)
83 cd04156 ARLTS1 ARLTS1 subfamil 98.0 4.8E-06 1E-10 61.4 2.9 58 4-84 100-159 (160)
84 cd04134 Rho3 Rho3 subfamily. 98.0 2.4E-05 5.3E-10 60.4 7.0 27 61-87 148-174 (189)
85 PTZ00099 rab6; Provisional 98.0 2.8E-05 6.2E-10 60.3 7.4 57 5-86 85-141 (176)
86 cd04137 RheB Rheb (Ras Homolog 98.0 2.6E-05 5.7E-10 58.9 6.9 59 3-86 104-162 (180)
87 TIGR00073 hypB hydrogenase acc 98.0 1.8E-05 3.8E-10 62.6 6.2 58 5-85 148-205 (207)
88 TIGR03596 GTPase_YlqF ribosome 98.0 2.2E-05 4.7E-10 65.1 7.0 56 5-87 48-103 (276)
89 PRK09435 membrane ATPase/prote 98.0 6.1E-05 1.3E-09 64.9 10.0 26 62-87 235-260 (332)
90 TIGR00475 selB selenocysteine- 98.0 2.2E-05 4.7E-10 71.8 7.6 63 4-87 101-166 (581)
91 cd04135 Tc10 TC10 subfamily. 98.0 2.2E-05 4.8E-10 58.7 6.4 25 62-86 149-173 (174)
92 smart00175 RAB Rab subfamily o 98.0 3E-05 6.6E-10 56.9 7.1 58 4-86 104-161 (164)
93 PRK00454 engB GTP-binding prot 98.0 2.6E-05 5.6E-10 59.5 6.9 62 4-88 134-195 (196)
94 cd04129 Rho2 Rho2 subfamily. 98.0 1.6E-05 3.5E-10 61.2 5.7 25 62-86 148-172 (187)
95 TIGR00231 small_GTP small GTP- 98.0 1.8E-05 4E-10 56.1 5.6 53 5-83 108-160 (161)
96 cd04150 Arf1_5_like Arf1-Arf5- 98.0 8.4E-06 1.8E-10 61.2 4.0 23 62-84 136-158 (159)
97 cd04155 Arl3 Arl3 subfamily. 98.0 1.1E-05 2.5E-10 60.2 4.6 58 4-84 114-172 (173)
98 PLN00223 ADP-ribosylation fact 98.0 2.7E-05 5.8E-10 60.2 6.8 59 5-86 118-177 (181)
99 smart00174 RHO Rho (Ras homolo 98.0 1.6E-05 3.4E-10 59.5 5.3 25 62-86 147-171 (174)
100 cd01867 Rab8_Rab10_Rab13_like 98.0 2.7E-05 5.7E-10 58.4 6.5 58 4-86 107-164 (167)
101 cd04108 Rab36_Rab34 Rab34/Rab3 97.9 2.7E-05 5.9E-10 59.3 6.6 27 62-88 140-166 (170)
102 cd04109 Rab28 Rab28 subfamily. 97.9 3.2E-05 7E-10 61.1 7.2 28 61-88 140-167 (215)
103 COG2262 HflX GTPases [General 97.9 1.6E-05 3.4E-10 70.3 5.9 55 4-88 303-357 (411)
104 smart00177 ARF ARF-like small 97.9 2.1E-05 4.4E-10 60.1 5.8 60 5-86 114-173 (175)
105 PRK09518 bifunctional cytidyla 97.9 3.8E-05 8.3E-10 71.6 8.6 68 4-93 560-627 (712)
106 cd01874 Cdc42 Cdc42 subfamily. 97.9 3.1E-05 6.7E-10 59.3 6.8 25 61-85 149-173 (175)
107 cd04176 Rap2 Rap2 subgroup. T 97.9 2.4E-05 5.2E-10 57.9 5.9 57 4-85 105-161 (163)
108 cd04114 Rab30 Rab30 subfamily. 97.9 3.3E-05 7.3E-10 57.3 6.7 56 4-85 111-167 (169)
109 cd04158 ARD1 ARD1 subfamily. 97.9 2.9E-05 6.4E-10 58.6 6.3 27 62-88 136-162 (169)
110 cd01876 YihA_EngB The YihA (En 97.9 3.9E-05 8.4E-10 55.6 6.6 61 4-85 109-169 (170)
111 cd00877 Ran Ran (Ras-related n 97.9 3.6E-05 7.9E-10 58.2 6.7 55 5-86 104-158 (166)
112 PRK10512 selenocysteinyl-tRNA- 97.9 2.8E-05 6E-10 71.7 7.1 26 61-86 140-165 (614)
113 cd04141 Rit_Rin_Ric Rit/Rin/Ri 97.9 4.2E-05 9.2E-10 58.3 7.0 58 4-86 106-163 (172)
114 PRK12297 obgE GTPase CgtA; Rev 97.9 3.5E-05 7.6E-10 68.3 7.4 28 62-89 302-329 (424)
115 PLN03071 GTP-binding nuclear p 97.9 3.9E-05 8.4E-10 61.3 7.0 59 4-89 116-174 (219)
116 cd04159 Arl10_like Arl10-like 97.9 2E-05 4.3E-10 56.7 4.8 58 4-84 100-158 (159)
117 cd04143 Rhes_like Rhes_like su 97.9 3.8E-05 8.2E-10 63.0 7.0 59 4-86 112-170 (247)
118 cd04113 Rab4 Rab4 subfamily. 97.9 3.5E-05 7.6E-10 56.9 6.2 58 3-85 103-160 (161)
119 cd04116 Rab9 Rab9 subfamily. 97.9 3E-05 6.4E-10 57.9 5.9 56 4-84 113-168 (170)
120 PRK00098 GTPase RsgA; Reviewed 97.9 1.8E-05 3.9E-10 66.5 5.2 53 4-83 110-163 (298)
121 cd04120 Rab12 Rab12 subfamily. 97.9 4E-05 8.7E-10 61.0 6.9 59 4-86 104-162 (202)
122 cd04177 RSR1 RSR1 subgroup. R 97.9 4.7E-05 1E-09 57.1 6.9 59 3-85 104-162 (168)
123 cd01896 DRG The developmentall 97.9 2.4E-05 5.3E-10 63.4 5.7 50 5-86 176-225 (233)
124 TIGR03156 GTP_HflX GTP-binding 97.9 2.4E-05 5.2E-10 67.4 6.0 50 5-85 301-350 (351)
125 PTZ00369 Ras-like protein; Pro 97.9 5E-05 1.1E-09 58.6 7.2 57 5-86 110-166 (189)
126 PRK10463 hydrogenase nickel in 97.9 3.1E-05 6.7E-10 65.8 6.4 57 6-85 231-287 (290)
127 TIGR03598 GTPase_YsxC ribosome 97.9 2.3E-05 5.1E-10 59.9 5.1 52 4-76 128-179 (179)
128 cd04128 Spg1 Spg1p. Spg1p (se 97.9 5.1E-05 1.1E-09 58.8 7.0 26 62-87 141-166 (182)
129 cd04149 Arf6 Arf6 subfamily. 97.9 2.8E-05 6E-10 59.1 5.5 56 5-83 110-166 (168)
130 PRK09554 feoB ferrous iron tra 97.9 3.5E-05 7.6E-10 72.8 7.1 59 3-87 110-168 (772)
131 TIGR00437 feoB ferrous iron tr 97.9 3E-05 6.5E-10 71.1 6.5 58 3-86 97-154 (591)
132 cd01863 Rab18 Rab18 subfamily. 97.9 5.5E-05 1.2E-09 55.7 6.8 56 4-85 105-160 (161)
133 PRK09563 rbgA GTPase YlqF; Rev 97.9 5.5E-05 1.2E-09 63.1 7.5 57 5-88 51-107 (287)
134 cd04164 trmE TrmE (MnmE, ThdF, 97.9 2.9E-05 6.4E-10 56.1 5.2 51 4-86 106-156 (157)
135 TIGR00101 ureG urease accessor 97.9 3.7E-05 8E-10 61.2 6.1 29 57-85 166-194 (199)
136 cd01878 HflX HflX subfamily. 97.8 3.7E-05 8E-10 59.6 5.8 51 5-85 153-203 (204)
137 cd01861 Rab6 Rab6 subfamily. 97.8 4.2E-05 9.1E-10 56.2 5.8 55 5-85 105-160 (161)
138 cd04118 Rab24 Rab24 subfamily. 97.8 5.7E-05 1.2E-09 57.9 6.6 61 5-86 105-165 (193)
139 cd01871 Rac1_like Rac1-like su 97.8 4.2E-05 9.2E-10 58.5 5.8 24 61-84 149-172 (174)
140 cd04101 RabL4 RabL4 (Rab-like4 97.8 7.8E-05 1.7E-09 55.1 7.0 57 4-85 106-162 (164)
141 cd04121 Rab40 Rab40 subfamily. 97.8 6.7E-05 1.4E-09 59.0 7.0 58 4-86 109-166 (189)
142 cd01873 RhoBTB RhoBTB subfamil 97.8 3.4E-05 7.4E-10 60.8 5.3 25 61-85 170-194 (195)
143 cd01854 YjeQ_engC YjeQ/EngC. 97.8 3.5E-05 7.6E-10 64.5 5.6 54 4-84 108-161 (287)
144 cd04126 Rab20 Rab20 subfamily. 97.8 5.9E-05 1.3E-09 61.0 6.6 26 62-87 165-190 (220)
145 cd04148 RGK RGK subfamily. Th 97.8 5.3E-05 1.1E-09 60.6 6.2 59 4-87 105-163 (221)
146 cd04110 Rab35 Rab35 subfamily. 97.8 7.6E-05 1.6E-09 58.2 6.9 59 4-87 109-167 (199)
147 cd01860 Rab5_related Rab5-rela 97.8 8.7E-05 1.9E-09 54.6 6.9 57 4-85 105-161 (163)
148 TIGR00487 IF-2 translation ini 97.8 6E-05 1.3E-09 69.2 6.7 62 3-83 185-246 (587)
149 cd00882 Ras_like_GTPase Ras-li 97.8 0.00011 2.3E-09 51.1 6.6 58 2-83 99-156 (157)
150 cd01875 RhoG RhoG subfamily. 97.8 5.6E-05 1.2E-09 58.7 5.6 25 62-86 152-176 (191)
151 TIGR03680 eif2g_arch translati 97.8 6.4E-05 1.4E-09 65.6 6.4 59 7-85 136-194 (406)
152 PF10662 PduV-EutP: Ethanolami 97.8 9.2E-05 2E-09 57.0 6.6 56 4-84 88-143 (143)
153 cd00154 Rab Rab family. Rab G 97.8 9.2E-05 2E-09 53.0 6.2 55 4-83 104-158 (159)
154 cd04153 Arl5_Arl8 Arl5/Arl8 su 97.8 7.3E-05 1.6E-09 56.8 6.0 57 5-83 116-172 (174)
155 cd01866 Rab2 Rab2 subfamily. 97.7 0.00014 3E-09 54.6 7.4 57 4-86 108-165 (168)
156 cd00879 Sar1 Sar1 subfamily. 97.7 3.1E-05 6.7E-10 59.1 3.9 23 62-84 166-188 (190)
157 cd04133 Rop_like Rop subfamily 97.7 6.6E-05 1.4E-09 58.3 5.8 24 63-86 149-172 (176)
158 PLN03110 Rab GTPase; Provision 97.7 0.00012 2.6E-09 58.2 7.3 60 4-88 116-175 (216)
159 cd04103 Centaurin_gamma Centau 97.7 4.6E-05 1E-09 57.6 4.7 24 61-84 133-156 (158)
160 cd00876 Ras Ras family. The R 97.7 0.0001 2.2E-09 53.5 6.3 57 4-85 103-159 (160)
161 smart00176 RAN Ran (Ras-relate 97.7 0.00013 2.8E-09 58.0 7.3 58 4-88 98-155 (200)
162 PTZ00133 ADP-ribosylation fact 97.7 5.8E-05 1.3E-09 58.3 5.1 60 5-87 118-178 (182)
163 COG0536 Obg Predicted GTPase [ 97.7 0.00011 2.5E-09 64.0 7.3 63 5-91 275-337 (369)
164 KOG1489|consensus 97.7 4.4E-05 9.6E-10 66.1 4.7 54 5-85 312-365 (366)
165 COG1160 Predicted GTPases [Gen 97.7 0.00012 2.5E-09 65.5 7.4 71 3-93 287-357 (444)
166 cd01891 TypA_BipA TypA (tyrosi 97.7 0.0001 2.2E-09 57.1 6.2 61 4-81 116-176 (194)
167 PRK04000 translation initiatio 97.7 7E-05 1.5E-09 65.7 5.9 59 7-85 141-199 (411)
168 cd04111 Rab39 Rab39 subfamily. 97.7 0.00015 3.2E-09 57.5 7.2 29 61-89 140-168 (211)
169 cd04125 RabA_like RabA-like su 97.7 0.00019 4.1E-09 54.9 7.6 26 61-86 136-161 (188)
170 cd04146 RERG_RasL11_like RERG/ 97.7 0.00011 2.5E-09 54.6 6.1 58 4-86 105-163 (165)
171 cd04130 Wrch_1 Wrch-1 subfamil 97.7 0.00011 2.3E-09 55.5 6.0 22 63-84 150-171 (173)
172 COG0378 HypB Ni2+-binding GTPa 97.7 7.2E-05 1.6E-09 60.6 5.0 55 8-85 145-199 (202)
173 KOG1145|consensus 97.7 0.00014 2.9E-09 67.0 7.1 65 4-87 252-316 (683)
174 cd01884 EF_Tu EF-Tu subfamily. 97.6 0.00021 4.5E-09 56.6 7.2 53 3-75 115-171 (195)
175 PRK05306 infB translation init 97.6 0.00011 2.4E-09 69.7 6.3 63 3-84 387-449 (787)
176 PRK11058 GTPase HflX; Provisio 97.6 0.00016 3.4E-09 64.1 6.8 24 64-87 339-362 (426)
177 PF03308 ArgK: ArgK protein; 97.6 0.00042 9.1E-09 58.3 9.0 41 62-104 205-245 (266)
178 PLN03118 Rab family protein; P 97.6 0.00029 6.4E-09 55.3 7.6 58 4-86 119-176 (211)
179 cd04117 Rab15 Rab15 subfamily. 97.6 0.00018 4E-09 53.8 5.9 57 4-85 104-160 (161)
180 CHL00189 infB translation init 97.5 0.00018 3.8E-09 68.0 6.6 64 3-85 345-408 (742)
181 COG0370 FeoB Fe2+ transport sy 97.5 0.00013 2.7E-09 67.9 5.4 77 3-105 106-186 (653)
182 PRK01889 GTPase RsgA; Reviewed 97.5 0.00023 4.9E-09 61.5 6.6 54 3-83 140-193 (356)
183 PLN03108 Rab family protein; P 97.5 0.00046 9.9E-09 54.5 7.9 57 4-86 110-167 (210)
184 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 97.5 0.00025 5.3E-09 58.0 6.5 24 63-86 163-187 (232)
185 PF00025 Arf: ADP-ribosylation 97.5 0.0002 4.4E-09 55.1 5.6 58 5-85 115-174 (175)
186 TIGR03597 GTPase_YqeH ribosome 97.5 0.0002 4.3E-09 61.9 6.2 57 5-85 90-151 (360)
187 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 97.5 0.0002 4.3E-09 55.8 5.6 24 62-85 154-178 (182)
188 smart00178 SAR Sar1p-like memb 97.5 0.00012 2.7E-09 56.3 4.4 25 61-85 159-183 (184)
189 PRK05291 trmE tRNA modificatio 97.5 0.00015 3.3E-09 64.3 5.5 52 4-88 320-371 (449)
190 cd01883 EF1_alpha Eukaryotic e 97.5 0.00011 2.4E-09 58.5 4.0 54 6-76 138-194 (219)
191 COG1160 Predicted GTPases [Gen 97.5 0.00012 2.7E-09 65.4 4.5 56 1-87 108-165 (444)
192 COG0486 ThdF Predicted GTPase 97.5 0.00019 4.1E-09 64.3 5.7 58 2-89 321-378 (454)
193 cd04131 Rnd Rnd subfamily. Th 97.5 0.00025 5.4E-09 54.8 5.6 24 62-85 150-174 (178)
194 PRK13796 GTPase YqeH; Provisio 97.5 0.00026 5.7E-09 61.2 6.1 57 5-85 96-157 (365)
195 PRK03003 GTP-binding protein D 97.5 0.00022 4.7E-09 63.4 5.6 55 3-86 144-198 (472)
196 COG0481 LepA Membrane GTPase L 97.4 0.00024 5.3E-09 64.5 5.6 59 4-86 127-185 (603)
197 PRK12736 elongation factor Tu; 97.4 0.0003 6.5E-09 61.2 5.9 19 3-21 125-144 (394)
198 PRK05433 GTP-binding protein L 97.4 0.00044 9.5E-09 63.7 6.9 57 4-86 125-183 (600)
199 TIGR03594 GTPase_EngA ribosome 97.4 0.00027 5.8E-09 61.1 4.8 53 3-86 105-159 (429)
200 KOG0462|consensus 97.3 0.00033 7E-09 64.4 5.4 59 3-86 175-234 (650)
201 cd01857 HSR1_MMR1 HSR1/MMR1. 97.3 0.00032 6.9E-09 52.1 4.5 23 5-27 42-64 (141)
202 cd04161 Arl2l1_Arl13_like Arl2 97.3 0.00023 4.9E-09 53.8 3.7 58 4-84 99-166 (167)
203 TIGR01393 lepA GTP-binding pro 97.3 0.0005 1.1E-08 63.2 6.6 59 4-86 121-179 (595)
204 TIGR02034 CysN sulfate adenyly 97.3 0.00046 1E-08 60.3 5.6 19 61-79 171-189 (406)
205 COG5257 GCD11 Translation init 97.3 0.00042 9E-09 60.5 5.1 60 7-86 142-201 (415)
206 PRK00093 GTP-binding protein D 97.3 0.00046 9.9E-09 60.0 5.2 51 3-84 107-159 (435)
207 cd04115 Rab33B_Rab33A Rab33B/R 97.2 0.0011 2.3E-08 49.8 6.6 57 4-85 108-167 (170)
208 cd04162 Arl9_Arfrp2_like Arl9/ 97.2 0.00028 6.1E-09 53.3 3.2 57 4-83 98-162 (164)
209 cd04166 CysN_ATPS CysN_ATPS su 97.2 0.00042 9.1E-09 54.7 4.2 17 62-78 169-185 (208)
210 COG1162 Predicted GTPases [Gen 97.2 0.00075 1.6E-08 57.8 5.6 57 3-86 108-166 (301)
211 PRK09866 hypothetical protein; 97.2 0.00079 1.7E-08 63.2 6.2 60 6-84 290-350 (741)
212 PF00071 Ras: Ras family; Int 97.2 0.0014 3.1E-08 48.1 6.3 57 5-86 104-160 (162)
213 PRK09518 bifunctional cytidyla 97.2 0.00075 1.6E-08 63.0 5.8 53 3-86 381-435 (712)
214 COG1703 ArgK Putative periplas 97.1 0.0018 4E-08 55.7 7.4 28 62-89 229-256 (323)
215 COG0218 Predicted GTPase [Gene 97.1 0.0022 4.7E-08 52.0 7.1 64 3-88 133-198 (200)
216 TIGR00483 EF-1_alpha translati 97.1 0.0008 1.7E-08 58.9 4.9 20 61-80 181-200 (426)
217 PRK12317 elongation factor 1-a 97.1 0.00092 2E-08 58.4 5.2 19 62-80 180-198 (425)
218 PTZ00132 GTP-binding nuclear p 97.1 0.0024 5.1E-08 50.1 7.0 58 4-88 112-169 (215)
219 cd01899 Ygr210 Ygr210 subfamil 97.0 0.0008 1.7E-08 57.5 4.5 58 2-87 211-269 (318)
220 COG5258 GTPBP1 GTPase [General 97.0 0.0014 3.1E-08 58.4 6.1 82 3-84 253-336 (527)
221 COG1163 DRG Predicted GTPase [ 97.0 0.0013 2.9E-08 57.2 5.7 51 5-87 239-289 (365)
222 PLN00043 elongation factor 1-a 97.0 0.0017 3.8E-08 57.7 6.6 56 4-77 143-203 (447)
223 PTZ00141 elongation factor 1- 97.0 0.0018 4E-08 57.5 6.3 59 4-77 143-203 (446)
224 KOG1144|consensus 97.0 0.0025 5.4E-08 60.7 7.2 31 62-92 662-692 (1064)
225 TIGR01394 TypA_BipA GTP-bindin 96.9 0.0019 4.1E-08 59.6 6.2 67 3-86 114-190 (594)
226 PRK12735 elongation factor Tu; 96.9 0.0022 4.8E-08 55.9 6.3 25 61-85 167-201 (396)
227 PRK05506 bifunctional sulfate 96.9 0.0015 3.3E-08 60.1 5.6 20 60-79 194-213 (632)
228 CHL00071 tufA elongation facto 96.9 0.0021 4.6E-08 56.2 6.2 19 3-21 125-144 (409)
229 KOG0092|consensus 96.9 0.0018 3.9E-08 52.5 5.2 28 60-87 140-167 (200)
230 PRK05124 cysN sulfate adenylyl 96.9 0.0015 3.3E-08 58.5 5.1 19 61-79 199-217 (474)
231 KOG1423|consensus 96.9 0.0013 2.8E-08 57.1 4.2 62 63-124 247-308 (379)
232 TIGR00485 EF-Tu translation el 96.8 0.0021 4.6E-08 55.8 5.3 19 62-80 168-187 (394)
233 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 96.8 0.0044 9.6E-08 50.2 6.7 25 62-86 150-175 (222)
234 PRK00049 elongation factor Tu; 96.8 0.0028 6E-08 55.3 5.9 18 3-20 125-143 (396)
235 COG2895 CysN GTPases - Sulfate 96.7 0.0016 3.6E-08 57.4 4.0 50 7-76 141-192 (431)
236 cd04168 TetM_like Tet(M)-like 96.7 0.0029 6.2E-08 51.6 4.8 24 62-85 210-233 (237)
237 PLN03127 Elongation factor Tu; 96.6 0.0042 9.1E-08 55.4 5.8 18 3-20 174-192 (447)
238 TIGR00450 mnmE_trmE_thdF tRNA 96.6 0.0058 1.3E-07 54.4 6.5 54 4-89 309-362 (442)
239 PLN03126 Elongation factor Tu; 96.5 0.0047 1E-07 55.6 5.6 18 3-20 194-212 (478)
240 PRK10218 GTP-binding protein; 96.5 0.0049 1.1E-07 57.1 5.6 67 3-86 118-194 (607)
241 cd04167 Snu114p Snu114p subfam 96.4 0.0088 1.9E-07 47.2 6.0 16 4-19 122-137 (213)
242 COG3276 SelB Selenocysteine-sp 96.4 0.0056 1.2E-07 54.9 5.3 60 5-87 102-162 (447)
243 PRK09602 translation-associate 96.4 0.0037 8E-08 55.0 4.0 65 2-95 214-279 (396)
244 KOG0078|consensus 96.3 0.011 2.4E-07 48.2 6.0 59 5-88 117-175 (207)
245 COG1161 Predicted GTPases [Gen 96.3 0.0085 1.8E-07 51.2 5.5 57 5-87 61-117 (322)
246 cd04104 p47_IIGP_like p47 (47- 96.2 0.028 6E-07 44.0 7.6 28 61-88 156-185 (197)
247 cd04178 Nucleostemin_like Nucl 96.1 0.0044 9.6E-08 48.3 2.7 28 4-31 29-56 (172)
248 PRK12740 elongation factor G; 96.0 0.017 3.7E-07 53.3 6.3 25 62-86 237-261 (668)
249 KOG0461|consensus 95.8 0.024 5.2E-07 50.4 6.3 64 7-87 124-193 (522)
250 KOG0094|consensus 95.8 0.02 4.4E-07 46.9 5.2 30 61-90 159-188 (221)
251 cd04105 SR_beta Signal recogni 95.7 0.025 5.3E-07 44.7 5.3 82 3-84 107-202 (203)
252 KOG0394|consensus 95.6 0.028 6.1E-07 45.7 5.3 28 60-87 151-178 (210)
253 KOG0093|consensus 95.6 0.024 5.2E-07 44.9 4.8 62 5-91 126-187 (193)
254 PRK13351 elongation factor G; 95.5 0.025 5.4E-07 52.5 5.6 25 62-86 253-277 (687)
255 cd04170 EF-G_bact Elongation f 95.5 0.0083 1.8E-07 49.1 2.1 100 3-127 114-224 (268)
256 KOG0076|consensus 95.5 0.011 2.5E-07 47.5 2.8 64 4-88 125-188 (197)
257 KOG0395|consensus 95.4 0.066 1.4E-06 42.7 6.9 60 4-88 107-166 (196)
258 COG2229 Predicted GTPase [Gene 95.3 0.054 1.2E-06 43.6 5.9 55 6-85 122-176 (187)
259 KOG0073|consensus 95.2 0.095 2.1E-06 41.9 7.2 57 5-84 117-175 (185)
260 KOG0088|consensus 95.2 0.062 1.3E-06 43.1 6.2 58 4-86 117-174 (218)
261 KOG0084|consensus 95.2 0.046 1E-06 44.5 5.4 57 5-86 114-171 (205)
262 KOG0072|consensus 95.1 0.048 1E-06 43.1 5.1 26 62-87 154-179 (182)
263 TIGR00484 EF-G translation elo 95.1 0.034 7.3E-07 51.9 5.0 25 62-86 254-278 (689)
264 KOG1143|consensus 95.0 0.072 1.6E-06 47.9 6.5 79 4-82 302-383 (591)
265 PRK00741 prfC peptide chain re 94.9 0.062 1.3E-06 49.0 6.0 25 62-86 249-273 (526)
266 cd01886 EF-G Elongation factor 94.7 0.019 4.1E-07 47.8 1.9 20 3-22 114-133 (270)
267 COG5256 TEF1 Translation elong 94.4 0.062 1.3E-06 48.1 4.7 56 7-79 147-203 (428)
268 COG1084 Predicted GTPase [Gene 94.4 0.079 1.7E-06 46.2 5.2 56 5-86 280-335 (346)
269 PRK12739 elongation factor G; 94.4 0.066 1.4E-06 50.0 4.9 25 62-86 253-277 (691)
270 cd04169 RF3 RF3 subfamily. Pe 94.2 0.19 4.2E-06 41.6 6.9 24 62-85 240-263 (267)
271 PRK00007 elongation factor G; 94.1 0.058 1.3E-06 50.5 4.1 25 62-86 255-279 (693)
272 COG1100 GTPase SAR1 and relate 93.9 0.38 8.2E-06 37.1 7.7 29 63-91 159-189 (219)
273 cd01882 BMS1 Bms1. Bms1 is an 93.9 0.17 3.6E-06 40.7 5.9 53 4-75 131-184 (225)
274 KOG4252|consensus 93.8 0.075 1.6E-06 43.4 3.7 58 5-87 124-181 (246)
275 COG1217 TypA Predicted membran 93.5 0.17 3.6E-06 46.5 5.6 65 3-86 118-194 (603)
276 KOG0086|consensus 93.3 0.19 4.1E-06 40.2 5.0 56 4-86 113-170 (214)
277 KOG0098|consensus 93.2 0.15 3.1E-06 41.7 4.3 55 5-84 111-165 (216)
278 KOG0458|consensus 93.1 0.16 3.4E-06 47.2 4.9 54 7-76 317-371 (603)
279 KOG0087|consensus 92.7 0.25 5.5E-06 40.7 5.1 55 4-84 118-173 (222)
280 cd01885 EF2 EF2 (for archaea a 92.5 0.21 4.6E-06 40.5 4.5 16 3-18 123-138 (222)
281 KOG1490|consensus 92.5 0.23 5.1E-06 45.8 5.2 55 5-81 281-335 (620)
282 TIGR00503 prfC peptide chain r 92.0 0.71 1.5E-05 42.2 7.7 25 62-86 250-274 (527)
283 KOG0081|consensus 92.0 0.62 1.3E-05 37.5 6.4 57 4-85 123-179 (219)
284 KOG0466|consensus 91.9 0.13 2.9E-06 45.2 2.7 67 7-93 181-247 (466)
285 KOG1487|consensus 91.4 0.15 3.3E-06 43.8 2.6 51 5-87 231-281 (358)
286 COG4917 EutP Ethanolamine util 91.4 0.55 1.2E-05 36.3 5.3 50 6-84 91-143 (148)
287 cd01852 AIG1 AIG1 (avrRpt2-ind 91.0 0.88 1.9E-05 35.2 6.4 63 6-88 117-185 (196)
288 KOG1191|consensus 90.8 0.27 5.9E-06 45.0 3.7 61 5-87 389-450 (531)
289 KOG1424|consensus 90.2 0.29 6.2E-06 45.1 3.3 38 7-71 207-244 (562)
290 KOG0410|consensus 90.1 0.17 3.8E-06 44.5 1.8 24 64-87 318-341 (410)
291 KOG0079|consensus 89.6 0.76 1.6E-05 36.6 4.9 58 5-87 112-169 (198)
292 KOG0070|consensus 89.2 1 2.3E-05 36.1 5.5 60 5-87 118-178 (181)
293 KOG0075|consensus 89.0 0.89 1.9E-05 36.1 4.9 61 4-87 121-182 (186)
294 KOG0091|consensus 88.7 1.9 4.2E-05 34.8 6.6 27 60-86 146-172 (213)
295 KOG3905|consensus 88.5 2 4.3E-05 38.3 7.1 68 4-85 221-288 (473)
296 KOG1707|consensus 88.2 0.25 5.3E-06 46.1 1.4 74 5-100 115-189 (625)
297 KOG0083|consensus 88.1 0.39 8.4E-06 37.7 2.3 32 56-88 130-161 (192)
298 KOG0393|consensus 87.6 1.3 2.7E-05 36.0 5.1 71 4-86 108-178 (198)
299 PRK07560 elongation factor EF- 86.7 1.4 3E-05 41.7 5.5 19 3-21 137-155 (731)
300 KOG0463|consensus 86.5 0.52 1.1E-05 42.6 2.5 77 4-83 272-354 (641)
301 KOG0090|consensus 85.9 1.5 3.2E-05 36.5 4.7 23 62-85 215-237 (238)
302 PF05783 DLIC: Dynein light in 85.8 2.2 4.8E-05 38.7 6.1 68 4-86 195-263 (472)
303 KOG2484|consensus 85.6 0.82 1.8E-05 41.0 3.2 22 6-27 178-199 (435)
304 KOG0097|consensus 84.9 3 6.5E-05 33.0 5.7 20 60-79 146-165 (215)
305 KOG2486|consensus 83.1 0.31 6.7E-06 42.0 -0.4 25 60-84 289-313 (320)
306 KOG2485|consensus 81.8 8.8 0.00019 33.5 7.9 80 5-84 73-165 (335)
307 PF08438 MMR_HSR1_C: GTPase of 81.7 1.3 2.8E-05 32.7 2.4 37 59-102 21-60 (109)
308 COG0050 TufB GTPases - transla 80.6 3.8 8.2E-05 36.0 5.2 20 5-24 127-147 (394)
309 KOG0459|consensus 79.0 3.4 7.4E-05 37.5 4.6 59 7-80 219-279 (501)
310 KOG0095|consensus 76.0 2.5 5.5E-05 33.7 2.6 21 64-84 146-166 (213)
311 cd04170 EF-G_bact Elongation f 75.9 2.7 5.9E-05 34.2 2.9 24 62-85 241-264 (268)
312 KOG0071|consensus 75.6 2.8 6.1E-05 33.1 2.8 59 5-86 118-177 (180)
313 cd04102 RabL3 RabL3 (Rab-like3 75.3 1.7 3.8E-05 34.5 1.6 16 5-20 129-144 (202)
314 cd01850 CDC_Septin CDC/Septin. 73.9 4.6 0.0001 33.6 3.9 19 5-23 143-161 (276)
315 PF03193 DUF258: Protein of un 72.6 3.6 7.9E-05 32.1 2.8 24 61-84 12-35 (161)
316 COG0523 Putative GTPases (G3E 72.4 7.7 0.00017 33.5 5.0 14 9-22 149-162 (323)
317 PTZ00258 GTP-binding protein; 70.1 7.1 0.00015 34.6 4.3 15 3-17 218-234 (390)
318 KOG0082|consensus 70.1 3.1 6.7E-05 36.6 2.1 78 5-86 262-343 (354)
319 TIGR02836 spore_IV_A stage IV 67.4 16 0.00035 33.5 6.0 59 3-89 178-236 (492)
320 KOG3883|consensus 65.6 14 0.00031 29.6 4.8 59 3-86 116-174 (198)
321 PF09439 SRPRB: Signal recogni 64.6 10 0.00023 30.1 3.9 19 3-21 110-128 (181)
322 KOG0080|consensus 64.3 9.5 0.00021 30.8 3.6 28 62-89 149-176 (209)
323 KOG2423|consensus 64.2 14 0.00031 33.7 5.1 76 5-84 244-329 (572)
324 PLN00023 GTP-binding protein; 64.1 4.6 0.0001 35.2 1.9 16 5-20 151-166 (334)
325 PRK13505 formate--tetrahydrofo 63.3 14 0.0003 34.5 5.0 59 3-88 370-430 (557)
326 PF00503 G-alpha: G-protein al 61.6 4.4 9.6E-05 35.0 1.4 24 62-85 365-388 (389)
327 COG3596 Predicted GTPase [Gene 61.2 22 0.00048 30.6 5.5 69 6-87 149-222 (296)
328 COG4108 PrfC Peptide chain rel 58.4 60 0.0013 30.0 8.0 31 56-86 243-275 (528)
329 PTZ00416 elongation factor 2; 57.4 12 0.00026 36.1 3.6 16 3-18 142-157 (836)
330 KOG1486|consensus 57.2 23 0.00049 30.8 4.8 50 6-87 239-288 (364)
331 COG0012 Predicted GTPase, prob 56.4 20 0.00043 31.9 4.5 18 3-20 204-221 (372)
332 PRK10328 DNA binding protein, 56.3 21 0.00045 27.2 4.1 49 75-129 26-74 (134)
333 COG0480 FusA Translation elong 55.7 7.8 0.00017 36.9 2.0 21 3-23 126-146 (697)
334 PLN00116 translation elongatio 55.7 16 0.00035 35.3 4.2 16 3-18 148-163 (843)
335 PF15469 Sec5: Exocyst complex 55.2 29 0.00064 26.7 4.9 51 55-105 22-72 (182)
336 PF04548 AIG1: AIG1 family; I 55.0 25 0.00054 27.7 4.6 29 62-90 155-189 (212)
337 KOG1534|consensus 54.4 8.5 0.00018 32.4 1.8 86 3-90 162-254 (273)
338 KOG0077|consensus 53.6 11 0.00023 30.5 2.2 18 4-21 120-137 (193)
339 KOG1533|consensus 53.3 13 0.00027 31.8 2.7 83 2-85 160-251 (290)
340 smart00053 DYNc Dynamin, GTPas 52.7 10 0.00022 31.3 2.1 19 3-21 190-208 (240)
341 cd00066 G-alpha G protein alph 52.5 6.5 0.00014 33.3 0.9 25 62-86 286-310 (317)
342 TIGR00490 aEF-2 translation el 49.6 8.3 0.00018 36.4 1.2 20 3-22 136-155 (720)
343 smart00275 G_alpha G protein a 49.1 8.5 0.00018 33.1 1.1 25 62-86 309-333 (342)
344 KOG0467|consensus 46.5 19 0.00041 35.1 3.0 13 63-75 193-205 (887)
345 cd01886 EF-G Elongation factor 45.7 17 0.00037 30.1 2.4 24 62-85 243-266 (270)
346 KOG0096|consensus 44.9 12 0.00027 30.7 1.3 55 5-86 114-168 (216)
347 TIGR00824 EIIA-man PTS system, 42.1 90 0.0019 22.5 5.5 28 63-90 29-56 (116)
348 KOG0460|consensus 40.5 42 0.00091 30.2 4.0 18 8-25 173-190 (449)
349 KOG0085|consensus 39.7 30 0.00065 29.7 2.9 86 5-93 266-356 (359)
350 PRK10947 global DNA-binding tr 39.3 58 0.0012 24.8 4.2 49 75-129 26-74 (135)
351 KOG2743|consensus 38.9 37 0.0008 30.0 3.4 16 10-25 216-231 (391)
352 PRK10416 signal recognition pa 38.2 54 0.0012 28.0 4.3 19 61-81 286-304 (318)
353 PF14331 ImcF-related_N: ImcF- 37.0 24 0.00053 29.2 2.0 17 3-19 67-83 (266)
354 PF13148 DUF3987: Protein of u 35.3 2.2E+02 0.0048 23.9 7.6 43 65-107 42-84 (378)
355 COG2759 MIS1 Formyltetrahydrof 35.1 43 0.00093 31.0 3.3 22 67-88 406-427 (554)
356 KOG1249|consensus 35.0 13 0.00029 34.6 0.2 25 63-87 187-211 (572)
357 KOG1772|consensus 34.8 1.3E+02 0.0027 22.4 5.2 38 71-108 4-41 (108)
358 TIGR02475 CobW cobalamin biosy 34.2 27 0.00058 30.1 1.8 14 9-22 177-190 (341)
359 PRK14974 cell division protein 33.3 71 0.0015 27.7 4.3 19 61-81 306-324 (336)
360 PF01031 Dynamin_M: Dynamin ce 33.0 1.2E+02 0.0025 25.1 5.5 39 69-107 53-91 (295)
361 PF04518 Effector_1: Effector 33.0 1.8E+02 0.0038 26.0 6.8 93 32-128 142-242 (379)
362 PF10683 DBD_Tnp_Hermes: Herme 32.2 26 0.00057 23.9 1.2 31 63-93 27-57 (68)
363 PRK09601 GTP-binding protein Y 31.5 81 0.0018 27.8 4.4 15 3-17 197-211 (364)
364 PF02731 SKIP_SNW: SKIP/SNW do 30.4 1.9E+02 0.0041 22.8 5.9 46 73-119 105-150 (158)
365 PF02096 60KD_IMP: 60Kd inner 30.4 1.1E+02 0.0024 23.7 4.6 41 87-128 29-69 (198)
366 KOG0447|consensus 30.2 1.1E+02 0.0023 29.5 5.1 29 5-38 479-507 (980)
367 TIGR00064 ftsY signal recognit 30.0 95 0.0021 25.8 4.4 19 61-81 244-262 (272)
368 TIGR03592 yidC_oxa1_cterm memb 29.0 1.1E+02 0.0024 23.7 4.5 40 88-128 29-68 (181)
369 PRK13507 formate--tetrahydrofo 28.4 66 0.0014 30.3 3.4 58 3-87 399-458 (587)
370 PF14989 CCDC32: Coiled-coil d 28.3 69 0.0015 24.9 3.1 52 91-143 55-118 (148)
371 KOG4423|consensus 27.8 1.7E+02 0.0036 24.3 5.3 24 63-86 170-193 (229)
372 PF09547 Spore_IV_A: Stage IV 27.8 2E+02 0.0043 26.6 6.3 58 4-89 179-236 (492)
373 cd00477 FTHFS Formyltetrahydro 27.1 86 0.0019 29.2 3.9 58 3-87 354-413 (524)
374 PRK13506 formate--tetrahydrofo 26.4 47 0.001 31.2 2.1 60 3-88 391-452 (578)
375 PF12220 U1snRNP70_N: U1 small 26.4 68 0.0015 22.5 2.5 17 72-88 37-53 (94)
376 KOG2627|consensus 26.1 79 0.0017 29.0 3.4 29 80-108 46-74 (488)
377 TIGR01501 MthylAspMutase methy 25.8 2E+02 0.0042 21.7 5.1 29 61-89 52-80 (134)
378 cd02072 Glm_B12_BD B12 binding 24.8 2.2E+02 0.0048 21.3 5.2 29 61-89 50-78 (128)
379 smart00010 small_GTPase Small 24.5 45 0.00098 22.6 1.3 15 3-17 75-89 (124)
380 PF07352 Phage_Mu_Gam: Bacteri 24.3 95 0.0021 23.4 3.2 19 130-148 68-86 (149)
381 PF14193 DUF4315: Domain of un 24.0 1.8E+02 0.004 20.3 4.3 35 94-128 17-51 (83)
382 PF08565 CDC37_M: Cdc37 Hsp90 23.7 3.6E+02 0.0079 21.1 7.1 36 72-107 125-165 (173)
383 KOG1707|consensus 23.5 1.4E+02 0.0029 28.5 4.5 72 3-102 524-595 (625)
384 KOG0468|consensus 23.4 40 0.00087 32.8 1.1 15 4-18 248-262 (971)
385 COG1149 MinD superfamily P-loo 23.3 72 0.0016 27.4 2.5 18 3-20 212-229 (284)
386 PTZ00256 glutathione peroxidas 22.0 2.3E+02 0.005 21.6 5.0 28 5-34 40-67 (183)
387 KOG4348|consensus 21.8 2.4E+02 0.0052 26.2 5.6 51 66-116 562-615 (627)
388 PRK00182 tatB sec-independent 21.2 1.9E+02 0.004 22.9 4.3 36 71-106 33-68 (160)
389 PF11274 DUF3074: Protein of u 20.8 94 0.002 24.5 2.6 34 66-99 4-40 (184)
390 PRK00766 hypothetical protein; 20.5 2.4E+02 0.0052 22.7 4.9 26 63-89 145-170 (194)
391 PRK11537 putative GTP-binding 20.3 58 0.0013 27.8 1.4 12 9-20 154-165 (318)
No 1
>KOG1532|consensus
Probab=100.00 E-value=3.7e-39 Score=270.44 Aligned_cols=128 Identities=40% Similarity=0.689 Sum_probs=125.4
Q ss_pred CCCCCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhh-chhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHH
Q psy7275 1 MYDTGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEA-DSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELL 79 (150)
Q Consensus 1 lyk~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~-e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~ 79 (150)
|||+++|+|+||||+|+.+++|+.+||+|||+|++++.. +++|+++|++||||+|+|||+++++|+|||.||+|+++|+
T Consensus 177 lyktklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~ 256 (366)
T KOG1532|consen 177 LYKTKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFF 256 (366)
T ss_pred HHhccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHH
Confidence 799999999999999999999999999999999999996 8899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHhhCCCCCCCCcc
Q psy7275 80 QLIKLAGEDYEKNYRVEWIRLRDEKAKSEQLEKREQHFALPTPQPLWAS 128 (150)
Q Consensus 80 ~~I~e~~~ey~~~y~pe~e~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 128 (150)
.+|.+.++||.++|+|++||++++++..+++++++++++|+|||++.+-
T Consensus 257 ~av~~~vdEy~~~ykp~~Ek~k~~k~~~ee~~k~k~le~l~kdm~~~~~ 305 (366)
T KOG1532|consen 257 TAVDESVDEYEEEYKPEYEKKKAEKRLAEEERKKKQLEKLMKDMHVSPL 305 (366)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhHHHHHhccCcccc
Confidence 9999999999999999999999999999999999999999999998876
No 2
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.22 E-value=9.4e-12 Score=101.87 Aligned_cols=83 Identities=30% Similarity=0.560 Sum_probs=67.6
Q ss_pred CCCCCCCEEEeeecCCCCC--chhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHH
Q psy7275 1 MYDTGFPYTELVVGIDIVN--HKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEEL 78 (150)
Q Consensus 1 lyk~~lP~IlV~NKiDl~~--~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL 78 (150)
|+|+++|+|+|+||+|+.+ .++..+|+.|++.+...+..+ ...+.++++..+++|+..++++++|+.+++|+++|
T Consensus 152 ~~~~~lP~vnvlsK~Dl~~~~~~~~l~~~~d~~~l~~~~~~~---~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L 228 (238)
T PF03029_consen 152 MLRLELPHVNVLSKIDLLSKYLEFILEWFEDPDSLEDLLESD---YKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEEL 228 (238)
T ss_dssp HHHHTSEEEEEE--GGGS-HHHHHHHHHHHSHHHHHHHHHT----HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHH
T ss_pred HhhCCCCEEEeeeccCcccchhHHHHHHhcChHHHHHHHHHH---HHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHH
Confidence 4678999999999999998 666789999999999888754 67899999999999987779999999999999999
Q ss_pred HHHHHHHH
Q psy7275 79 LQLIKLAG 86 (150)
Q Consensus 79 ~~~I~e~~ 86 (150)
+..|+++.
T Consensus 229 ~~~id~a~ 236 (238)
T PF03029_consen 229 LAAIDKAN 236 (238)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99999875
No 3
>PRK13768 GTPase; Provisional
Probab=98.73 E-value=6.5e-08 Score=79.54 Aligned_cols=84 Identities=24% Similarity=0.367 Sum_probs=67.6
Q ss_pred CCCCCEEEeeecCCCCCchhh---HHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHH
Q psy7275 3 DTGFPYTELVVGIDIVNHKYA---IEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELL 79 (150)
Q Consensus 3 k~~lP~IlV~NKiDl~~~~~~---~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~ 79 (150)
+.++|+|+|+||+|+.+.+.. ..++.+++.+...+..+.++...+.+++...+..+....+++++||.+|+|+++|.
T Consensus 160 ~~~~~~i~v~nK~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~ 239 (253)
T PRK13768 160 RLGLPQIPVLNKADLLSEEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELY 239 (253)
T ss_pred HcCCCEEEEEEhHhhcCchhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHH
Confidence 467899999999999876443 46777877777777655555677888888777887766799999999999999999
Q ss_pred HHHHHHH
Q psy7275 80 QLIKLAG 86 (150)
Q Consensus 80 ~~I~e~~ 86 (150)
+.|.+.+
T Consensus 240 ~~I~~~l 246 (253)
T PRK13768 240 AAIQEVF 246 (253)
T ss_pred HHHHHHc
Confidence 9998765
No 4
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=98.57 E-value=7.5e-08 Score=79.17 Aligned_cols=106 Identities=10% Similarity=0.057 Sum_probs=69.4
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK 83 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~ 83 (150)
.+.|+|+|+||+|+.+.+...+++.+ + ...+...++++|||++|.|+++|++.|.
T Consensus 106 ~~~p~ilV~NK~Dl~~~~~~~~~~~~-------~------------------~~~~~~~~v~~iSA~~g~gi~~L~~~l~ 160 (270)
T TIGR00436 106 LKRPVVLTRNKLDNKFKDKLLPLIDK-------Y------------------AILEDFKDIVPISALTGDNTSFLAAFIE 160 (270)
T ss_pred cCCCEEEEEECeeCCCHHHHHHHHHH-------H------------------HhhcCCCceEEEecCCCCCHHHHHHHHH
Confidence 56899999999999754332111110 0 0112223899999999999999999999
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHhhCCCCCCCCcccCCCcc
Q psy7275 84 LAGEDYEKNYRVEWIRLRDEKAKSEQLEKREQHFALPTPQPLWASCDRGNC 134 (150)
Q Consensus 84 e~~~ey~~~y~pe~e~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 134 (150)
+.+.+-...|.++.---+.++....+--+++-+..+.+.++-+.+...-+.
T Consensus 161 ~~l~~~~~~~~~~~~t~~~~~~~~~e~ire~~~~~~~~e~p~~~~~~~~~~ 211 (270)
T TIGR00436 161 VHLPEGPFRYPEDYVTDQPDRFKISEIIREKIIRYTKEEIPHSVRVEIERK 211 (270)
T ss_pred HhCCCCCCCCCCcccCCCCHHHHHHHHHHHHHHHhcccccCceEEEEEEEE
Confidence 988776666666544444444444455566678888888766555544333
No 5
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.51 E-value=3.4e-07 Score=69.10 Aligned_cols=58 Identities=14% Similarity=0.186 Sum_probs=42.6
Q ss_pred CCCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHH
Q psy7275 3 DTGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLI 82 (150)
Q Consensus 3 k~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I 82 (150)
..+.|+|+|+||+|+.+.+...+|+..+. +. ....++.+||.+|.|+++|.+.+
T Consensus 27 ~~~~p~IiVlNK~Dl~~~~~~~~~~~~~~-------------------------~~-~~~~ii~vSa~~~~gi~~L~~~i 80 (155)
T cd01849 27 EKGKKLILVLNKADLVPKEVLRKWLAYLR-------------------------HS-YPTIPFKISATNGQGIEKKESAF 80 (155)
T ss_pred cCCCCEEEEEechhcCCHHHHHHHHHHHH-------------------------hh-CCceEEEEeccCCcChhhHHHHH
Confidence 45789999999999976654456652221 11 13478999999999999999988
Q ss_pred HHHH
Q psy7275 83 KLAG 86 (150)
Q Consensus 83 ~e~~ 86 (150)
.+..
T Consensus 81 ~~~~ 84 (155)
T cd01849 81 TKQT 84 (155)
T ss_pred HHHh
Confidence 6553
No 6
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=98.43 E-value=8.6e-07 Score=65.00 Aligned_cols=58 Identities=9% Similarity=0.037 Sum_probs=39.2
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK 83 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~ 83 (150)
.++|+|+|+||+|+.+... .+..+...+. .+ + +.+++.+||++|+|+++++..+.
T Consensus 104 ~~~piiiv~NK~D~~~~~~--~~~~~~~~~~---------------------~~-~-~~~~~~~Sa~~~~gi~~l~~~l~ 158 (164)
T cd04139 104 DNVPLLLVGNKCDLEDKRQ--VSSEEAANLA---------------------RQ-W-GVPYVETSAKTRQNVEKAFYDLV 158 (164)
T ss_pred CCCCEEEEEEccccccccc--cCHHHHHHHH---------------------HH-h-CCeEEEeeCCCCCCHHHHHHHHH
Confidence 4789999999999865211 0111111111 11 1 36899999999999999999987
Q ss_pred HHH
Q psy7275 84 LAG 86 (150)
Q Consensus 84 e~~ 86 (150)
+.+
T Consensus 159 ~~~ 161 (164)
T cd04139 159 REI 161 (164)
T ss_pred HHH
Confidence 654
No 7
>PRK00089 era GTPase Era; Reviewed
Probab=98.41 E-value=3.3e-07 Score=75.63 Aligned_cols=101 Identities=20% Similarity=0.246 Sum_probs=68.9
Q ss_pred CCCCEEEeeecCCCCCc-hhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNH-KYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLI 82 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~-~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I 82 (150)
.+.|+|+|+||+|+... +...+.+ +.+ .+.+...+++++||.+|.|+++|++.+
T Consensus 112 ~~~pvilVlNKiDl~~~~~~l~~~~-------~~l------------------~~~~~~~~i~~iSA~~~~gv~~L~~~L 166 (292)
T PRK00089 112 VKTPVILVLNKIDLVKDKEELLPLL-------EEL------------------SELMDFAEIVPISALKGDNVDELLDVI 166 (292)
T ss_pred cCCCEEEEEECCcCCCCHHHHHHHH-------HHH------------------HhhCCCCeEEEecCCCCCCHHHHHHHH
Confidence 36799999999999743 3221111 111 112234689999999999999999999
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHhhCCCCCCCCccc
Q psy7275 83 KLAGEDYEKNYRVEWIRLRDEKAKSEQLEKREQHFALPTPQPLWASC 129 (150)
Q Consensus 83 ~e~~~ey~~~y~pe~e~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 129 (150)
.+.+.+-...|.++.-.-...+.-..+--+++-+..+.+.++-..+.
T Consensus 167 ~~~l~~~~~~y~~~~~td~~~r~~~~EiiRe~~~~~l~~e~p~~~~v 213 (292)
T PRK00089 167 AKYLPEGPPYYPEDQITDRPERFLAAEIIREKLLRLLGDELPYSVAV 213 (292)
T ss_pred HHhCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhCCccCCceEEE
Confidence 99887666666665444444555555555678888888887655443
No 8
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=98.40 E-value=7.4e-07 Score=81.76 Aligned_cols=88 Identities=19% Similarity=0.307 Sum_probs=50.0
Q ss_pred CCCCCEEEeeecCCCCCch---hhHHHhhcHHHHHHHHhhc-hhhhhhhHHHHH---------HHHHHhhcCCcEEEeec
Q psy7275 3 DTGFPYTELVVGIDIVNHK---YAIEWMQDFEVFQEALEAD-SSYISNLTRSMS---------LALDEFYSTLKVVGFSS 69 (150)
Q Consensus 3 k~~lP~IlV~NKiDl~~~~---~~~ewm~D~e~f~eal~~e-~~y~~~L~~sls---------l~l~efy~~l~vv~VSA 69 (150)
..++|+|+|+||+|+.+.- ....|++........+..+ ......+...+. ..+.+|+...++|+|||
T Consensus 119 ~~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA 198 (590)
T TIGR00491 119 MYKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISA 198 (590)
T ss_pred HcCCCEEEEEECCCccchhhhccCchHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeec
Confidence 3578999999999986421 1112333222222111110 001111111111 11236777789999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHH
Q psy7275 70 VSGEGTEELLQLIKLAGEDYE 90 (150)
Q Consensus 70 ~TGeGideL~~~I~e~~~ey~ 90 (150)
+||+|+++|+..|....+.|.
T Consensus 199 ~tGeGideLl~~l~~l~~~~l 219 (590)
T TIGR00491 199 ITGEGIPELLTMLAGLAQQYL 219 (590)
T ss_pred CCCCChhHHHHHHHHHHHHHh
Confidence 999999999998877655554
No 9
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=98.36 E-value=8.9e-07 Score=68.52 Aligned_cols=63 Identities=25% Similarity=0.472 Sum_probs=40.0
Q ss_pred CCCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHh-h---cCCcEEEeecCCCCCHHHH
Q psy7275 3 DTGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEF-Y---STLKVVGFSSVSGEGTEEL 78 (150)
Q Consensus 3 k~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~ef-y---~~l~vv~VSA~TGeGideL 78 (150)
..++|+|+|+||+|+...++ .+.. +.++..+ +.++ + ...+++++||.+|.|+++|
T Consensus 120 ~~~~p~ivvlNK~D~~~~~~-~~~~---~~~~~~l-----------------~~~~~~~~~~~~~vi~~Sa~~g~gi~~L 178 (188)
T PF00009_consen 120 ELGIPIIVVLNKMDLIEKEL-EEII---EEIKEKL-----------------LKEYGENGEEIVPVIPISALTGDGIDEL 178 (188)
T ss_dssp HTT-SEEEEEETCTSSHHHH-HHHH---HHHHHHH-----------------HHHTTSTTTSTEEEEEEBTTTTBTHHHH
T ss_pred ccccceEEeeeeccchhhhH-HHHH---HHHHHHh-----------------ccccccCccccceEEEEecCCCCCHHHH
Confidence 46789999999999972221 1111 1111111 1111 1 1358999999999999999
Q ss_pred HHHHHHHH
Q psy7275 79 LQLIKLAG 86 (150)
Q Consensus 79 ~~~I~e~~ 86 (150)
+++|.+.+
T Consensus 179 l~~l~~~~ 186 (188)
T PF00009_consen 179 LEALVELL 186 (188)
T ss_dssp HHHHHHHS
T ss_pred HHHHHHhC
Confidence 99998754
No 10
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=98.36 E-value=7.5e-07 Score=70.19 Aligned_cols=26 Identities=15% Similarity=0.077 Sum_probs=22.9
Q ss_pred CCcEEEeecCCCCCHHHHHHHHHHHH
Q psy7275 61 TLKVVGFSSVSGEGTEELLQLIKLAG 86 (150)
Q Consensus 61 ~l~vv~VSA~TGeGideL~~~I~e~~ 86 (150)
..++++|||++|+|+++|++.|.+.+
T Consensus 173 ~~~i~~vSA~~g~gi~~L~~~l~~~l 198 (203)
T cd01888 173 NAPIIPISAQLKYNIDVLLEYIVKKI 198 (203)
T ss_pred CCcEEEEeCCCCCCHHHHHHHHHHhC
Confidence 46899999999999999999987654
No 11
>PRK14845 translation initiation factor IF-2; Provisional
Probab=98.34 E-value=2e-06 Score=83.43 Aligned_cols=36 Identities=31% Similarity=0.521 Sum_probs=30.0
Q ss_pred HHHhhcCCcEEEeecCCCCCHHHHHHHHHHHHHHHH
Q psy7275 55 LDEFYSTLKVVGFSSVSGEGTEELLQLIKLAGEDYE 90 (150)
Q Consensus 55 l~efy~~l~vv~VSA~TGeGideL~~~I~e~~~ey~ 90 (150)
..+|...+++|+|||+||+|+++|...|....+.|.
T Consensus 641 ~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~~~~l 676 (1049)
T PRK14845 641 VQDFTRTVAIVPVSAKTGEGIPELLMMVAGLAQKYL 676 (1049)
T ss_pred hhhcCCCceEEEEEcCCCCCHHHHHHHHHHhhHHhh
Confidence 456778889999999999999999998877665544
No 12
>PRK04213 GTP-binding protein; Provisional
Probab=98.32 E-value=1.3e-06 Score=67.45 Aligned_cols=66 Identities=23% Similarity=0.277 Sum_probs=41.8
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhc--CCcEEEeecCCCCCHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYS--TLKVVGFSSVSGEGTEELLQL 81 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~--~l~vv~VSA~TGeGideL~~~ 81 (150)
.++|+|+|+||+|+.+... +.+ +.+.+.+. +...|. ..+++++||++| |++++++.
T Consensus 129 ~~~p~iiv~NK~Dl~~~~~--~~~---~~~~~~~~----------------~~~~~~~~~~~~~~~SA~~g-gi~~l~~~ 186 (201)
T PRK04213 129 LGIPPIVAVNKMDKIKNRD--EVL---DEIAERLG----------------LYPPWRQWQDIIAPISAKKG-GIEELKEA 186 (201)
T ss_pred cCCCeEEEEECccccCcHH--HHH---HHHHHHhc----------------CCccccccCCcEEEEecccC-CHHHHHHH
Confidence 4689999999999865431 111 11111111 000111 136899999999 99999999
Q ss_pred HHHHHHHHHh
Q psy7275 82 IKLAGEDYEK 91 (150)
Q Consensus 82 I~e~~~ey~~ 91 (150)
|.+.+.++.+
T Consensus 187 l~~~~~~~~~ 196 (201)
T PRK04213 187 IRKRLHEAKR 196 (201)
T ss_pred HHHhhcCccc
Confidence 9887765543
No 13
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=98.31 E-value=1.6e-06 Score=64.45 Aligned_cols=55 Identities=20% Similarity=0.234 Sum_probs=39.0
Q ss_pred CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHH
Q psy7275 5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKL 84 (150)
Q Consensus 5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e 84 (150)
+.|+|+|+||+|+.+.....+ ..+. .. ....+++.+||++|.|++++++.+.+
T Consensus 113 ~~pvilv~NK~Dl~~~~~~~~-------~~~~-------------------~~-~~~~~~~~~Sa~~~~gi~~l~~~l~~ 165 (168)
T cd01897 113 NKPVIVVLNKIDLLTFEDLSE-------IEEE-------------------EE-LEGEEVLKISTLTEEGVDEVKNKACE 165 (168)
T ss_pred cCCeEEEEEccccCchhhHHH-------HHHh-------------------hh-hccCceEEEEecccCCHHHHHHHHHH
Confidence 689999999999975433211 0000 01 12468999999999999999999876
Q ss_pred HH
Q psy7275 85 AG 86 (150)
Q Consensus 85 ~~ 86 (150)
.+
T Consensus 166 ~~ 167 (168)
T cd01897 166 LL 167 (168)
T ss_pred Hh
Confidence 53
No 14
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=98.30 E-value=1.8e-06 Score=63.12 Aligned_cols=58 Identities=24% Similarity=0.236 Sum_probs=40.4
Q ss_pred CCCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHH
Q psy7275 3 DTGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLI 82 (150)
Q Consensus 3 k~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I 82 (150)
+.+.|+|+|+||+|+.+......+. + .+. .. .+.+++.+||.+|.|++++++.+
T Consensus 99 ~~~~~~iiv~NK~Dl~~~~~~~~~~---~----~~~-----------------~~--~~~~~~~iSa~~~~~~~~l~~~l 152 (158)
T cd01879 99 ELGLPVVVALNMIDEAEKRGIKIDL---D----KLS-----------------EL--LGVPVVPTSARKGEGIDELKDAI 152 (158)
T ss_pred HcCCCEEEEEehhhhcccccchhhH---H----HHH-----------------Hh--hCCCeEEEEccCCCCHHHHHHHH
Confidence 3578999999999997654322111 1 110 01 13689999999999999999988
Q ss_pred HHHH
Q psy7275 83 KLAG 86 (150)
Q Consensus 83 ~e~~ 86 (150)
...+
T Consensus 153 ~~~~ 156 (158)
T cd01879 153 AELA 156 (158)
T ss_pred HHHh
Confidence 7753
No 15
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=98.29 E-value=2.5e-06 Score=62.28 Aligned_cols=56 Identities=11% Similarity=0.100 Sum_probs=37.9
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK 83 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~ 83 (150)
.++|+|+|+||+|+.+.... ..+...+. .. .+.+++.+||++|.|++++++.+.
T Consensus 105 ~~~piivv~nK~Dl~~~~~~---~~~~~~~~---------------------~~--~~~~~~~~Sa~~~~gi~~l~~~l~ 158 (162)
T cd04138 105 DDVPMVLVGNKCDLAARTVS---SRQGQDLA---------------------KS--YGIPYIETSAKTRQGVEEAFYTLV 158 (162)
T ss_pred CCCCEEEEEECcccccceec---HHHHHHHH---------------------HH--hCCeEEEecCCCCCCHHHHHHHHH
Confidence 46899999999998653221 10100000 01 145899999999999999999886
Q ss_pred HH
Q psy7275 84 LA 85 (150)
Q Consensus 84 e~ 85 (150)
+.
T Consensus 159 ~~ 160 (162)
T cd04138 159 RE 160 (162)
T ss_pred HH
Confidence 54
No 16
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=98.29 E-value=3.8e-07 Score=70.86 Aligned_cols=54 Identities=30% Similarity=0.396 Sum_probs=37.7
Q ss_pred CCCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHH
Q psy7275 3 DTGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLI 82 (150)
Q Consensus 3 k~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I 82 (150)
.+++|+|+|+||+|....... .-|.+.+.+.+ +.+++++||.+|+|+++|+++|
T Consensus 103 e~g~P~vvvlN~~D~a~~~g~---~id~~~Ls~~L-----------------------g~pvi~~sa~~~~g~~~L~~~I 156 (156)
T PF02421_consen 103 ELGIPVVVVLNKMDEAERKGI---EIDAEKLSERL-----------------------GVPVIPVSARTGEGIDELKDAI 156 (156)
T ss_dssp HTTSSEEEEEETHHHHHHTTE---EE-HHHHHHHH-----------------------TS-EEEEBTTTTBTHHHHHHHH
T ss_pred HcCCCEEEEEeCHHHHHHcCC---EECHHHHHHHh-----------------------CCCEEEEEeCCCcCHHHHHhhC
Confidence 368999999999997543321 11333333322 5799999999999999999886
No 17
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.28 E-value=2.1e-06 Score=64.38 Aligned_cols=57 Identities=21% Similarity=0.229 Sum_probs=40.1
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK 83 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~ 83 (150)
.+.|+|+|+||+|+.+.....+|. .+. .. .+.++++|||++|.|+++|++.+.
T Consensus 40 ~~~p~iiv~NK~Dl~~~~~~~~~~----~~~---------------------~~--~~~~~~~iSa~~~~gi~~L~~~l~ 92 (156)
T cd01859 40 LGKKLLIVLNKADLVPKEVLEKWK----SIK---------------------ES--EGIPVVYVSAKERLGTKILRRTIK 92 (156)
T ss_pred CCCcEEEEEEhHHhCCHHHHHHHH----HHH---------------------Hh--CCCcEEEEEccccccHHHHHHHHH
Confidence 468999999999986543222221 000 01 235789999999999999999998
Q ss_pred HHHH
Q psy7275 84 LAGE 87 (150)
Q Consensus 84 e~~~ 87 (150)
+.+.
T Consensus 93 ~~~~ 96 (156)
T cd01859 93 ELAK 96 (156)
T ss_pred HHHh
Confidence 7654
No 18
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.27 E-value=1.4e-06 Score=78.77 Aligned_cols=69 Identities=29% Similarity=0.375 Sum_probs=51.3
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK 83 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~ 83 (150)
.+.|+|+++||+|..+.+.. .....+. +..+..++|.....+|++||+||+|+++|+..|.
T Consensus 106 a~vP~iVAiNKiDk~~~np~--------~v~~el~-----------~~gl~~E~~gg~v~~VpvSA~tg~Gi~eLL~~il 166 (509)
T COG0532 106 AGVPIVVAINKIDKPEANPD--------KVKQELQ-----------EYGLVPEEWGGDVIFVPVSAKTGEGIDELLELIL 166 (509)
T ss_pred CCCCEEEEEecccCCCCCHH--------HHHHHHH-----------HcCCCHhhcCCceEEEEeeccCCCCHHHHHHHHH
Confidence 57899999999999755432 1112221 1133566788788999999999999999999999
Q ss_pred HHHHHHHh
Q psy7275 84 LAGEDYEK 91 (150)
Q Consensus 84 e~~~ey~~ 91 (150)
...+-|+-
T Consensus 167 l~aev~el 174 (509)
T COG0532 167 LLAEVLEL 174 (509)
T ss_pred HHHHHHhh
Confidence 88877733
No 19
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=98.25 E-value=1.1e-06 Score=65.23 Aligned_cols=60 Identities=20% Similarity=0.271 Sum_probs=37.9
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHh-hcCCcEEEeecCCCCCHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEF-YSTLKVVGFSSVSGEGTEELLQLI 82 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~ef-y~~l~vv~VSA~TGeGideL~~~I 82 (150)
.++|+|+|+||+|+.+.... +...+.+... ..+. ....+++.+||++|+|++++++.|
T Consensus 106 ~~~p~ilv~NK~D~~~~~~~-------~~~~~~~~~~--------------~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l 164 (167)
T cd04160 106 EGVPLLILANKQDLPDALSV-------EEIKEVFQDK--------------AEEIGRRDCLVLPVSALEGTGVREGIEWL 164 (167)
T ss_pred cCCCEEEEEEccccccCCCH-------HHHHHHhccc--------------cccccCCceEEEEeeCCCCcCHHHHHHHH
Confidence 46899999999998654221 1111111100 0000 123589999999999999999887
Q ss_pred HH
Q psy7275 83 KL 84 (150)
Q Consensus 83 ~e 84 (150)
.+
T Consensus 165 ~~ 166 (167)
T cd04160 165 VE 166 (167)
T ss_pred hc
Confidence 53
No 20
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=98.24 E-value=3.6e-06 Score=61.68 Aligned_cols=24 Identities=33% Similarity=0.495 Sum_probs=21.4
Q ss_pred CCcEEEeecCCCCCHHHHHHHHHH
Q psy7275 61 TLKVVGFSSVSGEGTEELLQLIKL 84 (150)
Q Consensus 61 ~l~vv~VSA~TGeGideL~~~I~e 84 (150)
..+++++||++|+|+++++..+..
T Consensus 140 ~~~~~~~Sa~~~~~v~~l~~~l~~ 163 (164)
T cd04171 140 DAPIFPVSAVTGEGIEELKEYLDE 163 (164)
T ss_pred CCcEEEEeCCCCcCHHHHHHHHhh
Confidence 568999999999999999988754
No 21
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.22 E-value=2.3e-06 Score=64.59 Aligned_cols=55 Identities=16% Similarity=0.141 Sum_probs=39.0
Q ss_pred CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHH
Q psy7275 5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKL 84 (150)
Q Consensus 5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e 84 (150)
+.|.|+|+||+|+.+++....|+..+. +.+ ...++++||.+|.|+++|.+.|.+
T Consensus 39 ~~p~ilVlNKiDl~~~~~~~~~~~~~~-------------------------~~~-~~~~~~iSa~~~~~~~~L~~~l~~ 92 (157)
T cd01858 39 HKHLIFVLNKCDLVPTWVTARWVKILS-------------------------KEY-PTIAFHASINNPFGKGSLIQLLRQ 92 (157)
T ss_pred CCCEEEEEEchhcCCHHHHHHHHHHHh-------------------------cCC-cEEEEEeeccccccHHHHHHHHHH
Confidence 489999999999986554444542211 112 123688999999999999998865
Q ss_pred H
Q psy7275 85 A 85 (150)
Q Consensus 85 ~ 85 (150)
.
T Consensus 93 ~ 93 (157)
T cd01858 93 F 93 (157)
T ss_pred H
Confidence 4
No 22
>PRK12289 GTPase RsgA; Reviewed
Probab=98.21 E-value=2e-06 Score=74.42 Aligned_cols=55 Identities=20% Similarity=0.291 Sum_probs=40.8
Q ss_pred CCCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHH
Q psy7275 3 DTGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLI 82 (150)
Q Consensus 3 k~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I 82 (150)
..++|+|+|+||+|+++.+....|+..+. . .+++++.|||.+|.|+++|+..+
T Consensus 118 ~~~ip~ILVlNK~DLv~~~~~~~~~~~~~-------------------------~--~g~~v~~iSA~tg~GI~eL~~~L 170 (352)
T PRK12289 118 STGLEIVLCLNKADLVSPTEQQQWQDRLQ-------------------------Q--WGYQPLFISVETGIGLEALLEQL 170 (352)
T ss_pred HCCCCEEEEEEchhcCChHHHHHHHHHHH-------------------------h--cCCeEEEEEcCCCCCHHHHhhhh
Confidence 35789999999999986554444542211 0 13578999999999999999888
Q ss_pred HH
Q psy7275 83 KL 84 (150)
Q Consensus 83 ~e 84 (150)
..
T Consensus 171 ~~ 172 (352)
T PRK12289 171 RN 172 (352)
T ss_pred cc
Confidence 54
No 23
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=98.21 E-value=2.1e-06 Score=63.64 Aligned_cols=68 Identities=15% Similarity=0.195 Sum_probs=41.9
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK 83 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~ 83 (150)
..+|+|+|+||+|+.++....+|+.... .. ............+...+++.+||++|.|+++++..|.
T Consensus 103 ~~~p~ivv~nK~Dl~~~~~~~~~~~~~~---~~----------v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~ 169 (171)
T cd00157 103 PNVPIILVGTKIDLRDDENTLKKLEKGK---EP----------ITPEEGEKLAKEIGAIGYMECSALTQEGVKEVFEEAI 169 (171)
T ss_pred CCCCEEEEEccHHhhhchhhhhhcccCC---Cc----------cCHHHHHHHHHHhCCeEEEEeecCCCCCHHHHHHHHh
Confidence 4689999999999987654333320000 00 0000011122334445899999999999999999886
Q ss_pred H
Q psy7275 84 L 84 (150)
Q Consensus 84 e 84 (150)
+
T Consensus 170 ~ 170 (171)
T cd00157 170 R 170 (171)
T ss_pred h
Confidence 4
No 24
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=98.21 E-value=4e-06 Score=62.27 Aligned_cols=58 Identities=9% Similarity=0.023 Sum_probs=38.6
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK 83 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~ 83 (150)
.++|+|+|.||+|+.+..... ..+.+ .+ . ..+ +.+++.+||++|.|+++++..|.
T Consensus 105 ~~~piilv~nK~Dl~~~~~~~--~~~~~----~~----------~-------~~~--~~~~~~~Sa~~~~~v~~~~~~l~ 159 (164)
T cd04175 105 EDVPMILVGNKCDLEDERVVG--KEQGQ----NL----------A-------RQW--GCAFLETSAKAKINVNEIFYDLV 159 (164)
T ss_pred CCCCEEEEEECCcchhccEEc--HHHHH----HH----------H-------HHh--CCEEEEeeCCCCCCHHHHHHHHH
Confidence 468999999999986532210 00000 00 0 111 36899999999999999999987
Q ss_pred HHH
Q psy7275 84 LAG 86 (150)
Q Consensus 84 e~~ 86 (150)
+.+
T Consensus 160 ~~l 162 (164)
T cd04175 160 RQI 162 (164)
T ss_pred HHh
Confidence 644
No 25
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=98.21 E-value=4.9e-06 Score=61.74 Aligned_cols=62 Identities=15% Similarity=0.126 Sum_probs=41.7
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK 83 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~ 83 (150)
.++|+++|+||+|+..+... +. +...... +-+...+++.+||.+|.|++++++.|.
T Consensus 108 ~~~p~ilv~nK~Dl~~~~~~--~~---~~~~~~~-------------------~~~~~~~~~~~Sa~~~~gv~~l~~~i~ 163 (172)
T cd01862 108 ENFPFVVLGNKIDLEEKRQV--ST---KKAQQWC-------------------QSNGNIPYFETSAKEAINVEQAFETIA 163 (172)
T ss_pred CCceEEEEEECccccccccc--CH---HHHHHHH-------------------HHcCCceEEEEECCCCCCHHHHHHHHH
Confidence 37899999999999742211 00 0001110 112246899999999999999999998
Q ss_pred HHHHHH
Q psy7275 84 LAGEDY 89 (150)
Q Consensus 84 e~~~ey 89 (150)
+.+-+.
T Consensus 164 ~~~~~~ 169 (172)
T cd01862 164 RKALEQ 169 (172)
T ss_pred HHHHhc
Confidence 876544
No 26
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=98.20 E-value=2.7e-06 Score=65.49 Aligned_cols=26 Identities=23% Similarity=0.134 Sum_probs=22.6
Q ss_pred CcEEEeecCCCCCHHHHHHHHHHHHH
Q psy7275 62 LKVVGFSSVSGEGTEELLQLIKLAGE 87 (150)
Q Consensus 62 l~vv~VSA~TGeGideL~~~I~e~~~ 87 (150)
.+++++||++|+|+++++..|.+.+.
T Consensus 145 ~~~~~~SA~~~~gi~~l~~~l~~~l~ 170 (183)
T cd04152 145 WHVQPACAIIGEGLQEGLEKLYEMIL 170 (183)
T ss_pred eEEEEeecccCCCHHHHHHHHHHHHH
Confidence 46889999999999999999976663
No 27
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=98.20 E-value=3.2e-06 Score=59.96 Aligned_cols=61 Identities=23% Similarity=0.297 Sum_probs=44.1
Q ss_pred CCCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHH
Q psy7275 3 DTGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLI 82 (150)
Q Consensus 3 k~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I 82 (150)
+.+.|+|+|+||+|+..+.....|.. ... .........+++.+||.+|.|+++++..+
T Consensus 102 ~~~~~~ivv~nK~D~~~~~~~~~~~~-------~~~---------------~~~~~~~~~~~~~~sa~~~~~v~~l~~~l 159 (163)
T cd00880 102 ERGKPVLLVLNKIDLLPEEEEEELLE-------LRL---------------LILLLLLGLPVIAVSALTGEGIDELREAL 159 (163)
T ss_pred hcCCeEEEEEEccccCChhhHHHHHH-------HHH---------------hhcccccCCceEEEeeeccCCHHHHHHHH
Confidence 56789999999999987665443321 000 01123456799999999999999999988
Q ss_pred HHH
Q psy7275 83 KLA 85 (150)
Q Consensus 83 ~e~ 85 (150)
.+.
T Consensus 160 ~~~ 162 (163)
T cd00880 160 IEA 162 (163)
T ss_pred Hhh
Confidence 764
No 28
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=98.20 E-value=5.5e-06 Score=64.07 Aligned_cols=66 Identities=15% Similarity=0.179 Sum_probs=41.1
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHh-hcCCcEEEeecCCCCCHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEF-YSTLKVVGFSSVSGEGTEELLQLI 82 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~ef-y~~l~vv~VSA~TGeGideL~~~I 82 (150)
.+.|+|+|+||+|+...+.... ..+.+.+.+. ..+.++ +.+.+++++||++|+|+++|++.+
T Consensus 119 ~~~~~iiv~NK~Dl~~~~~~~~---~~~~~~~~l~--------------~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l 181 (192)
T cd01889 119 LCKKLIVVLNKIDLIPEEERER---KIEKMKKKLQ--------------KTLEKTRFKNSPIIPVSAKPGGGEAELGKDL 181 (192)
T ss_pred cCCCEEEEEECcccCCHHHHHH---HHHHHHHHHH--------------HHHHhcCcCCCCEEEEeccCCCCHHHHHHHH
Confidence 3679999999999875432111 0111111110 001111 235799999999999999999998
Q ss_pred HHHH
Q psy7275 83 KLAG 86 (150)
Q Consensus 83 ~e~~ 86 (150)
....
T Consensus 182 ~~~~ 185 (192)
T cd01889 182 NNLI 185 (192)
T ss_pred Hhcc
Confidence 8654
No 29
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=98.18 E-value=3.9e-06 Score=62.31 Aligned_cols=56 Identities=25% Similarity=0.392 Sum_probs=40.2
Q ss_pred CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHH
Q psy7275 5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKL 84 (150)
Q Consensus 5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e 84 (150)
+.|+|+|+||+|+.+.....+|+.++ . .+. ...+++.+||++|.|++++++.|.+
T Consensus 114 ~~p~ivv~NK~Dl~~~~~~~~~~~~~------~------------------~~~-~~~~~~~~Sa~~~~gi~~l~~~i~~ 168 (170)
T cd01898 114 EKPRIVVLNKIDLLDEEELFELLKEL------L------------------KEL-WGKPVFPISALTGEGLDELLRKLAE 168 (170)
T ss_pred ccccEEEEEchhcCCchhhHHHHHHH------H------------------hhC-CCCCEEEEecCCCCCHHHHHHHHHh
Confidence 67999999999997655433333211 0 010 2468999999999999999998875
Q ss_pred H
Q psy7275 85 A 85 (150)
Q Consensus 85 ~ 85 (150)
.
T Consensus 169 ~ 169 (170)
T cd01898 169 L 169 (170)
T ss_pred h
Confidence 4
No 30
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=98.17 E-value=4.2e-06 Score=61.49 Aligned_cols=58 Identities=17% Similarity=0.292 Sum_probs=37.7
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhh-cCCcEEEeecCCCCCHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFY-STLKVVGFSSVSGEGTEELLQLI 82 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy-~~l~vv~VSA~TGeGideL~~~I 82 (150)
.++|+|+|+||+|+.+..... .+.+.+. +.... ...+++.+||++|+|+++++..|
T Consensus 103 ~~~p~iiv~NK~Dl~~~~~~~-------~~~~~l~----------------~~~~~~~~~~~~~~Sa~~g~gv~~~~~~l 159 (162)
T cd04157 103 RRVPILFFANKMDLPDALTAV-------KITQLLG----------------LENIKDKPWHIFASNALTGEGLDEGVQWL 159 (162)
T ss_pred CCCCEEEEEeCccccCCCCHH-------HHHHHhC----------------CccccCceEEEEEeeCCCCCchHHHHHHH
Confidence 478999999999986542211 1112211 00111 12468899999999999999987
Q ss_pred HH
Q psy7275 83 KL 84 (150)
Q Consensus 83 ~e 84 (150)
.+
T Consensus 160 ~~ 161 (162)
T cd04157 160 QA 161 (162)
T ss_pred hc
Confidence 53
No 31
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=98.16 E-value=5.9e-06 Score=64.28 Aligned_cols=77 Identities=14% Similarity=0.061 Sum_probs=47.5
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK 83 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~ 83 (150)
.++|+|+|+||+|+......... ..... . .... ....++.+||++|.|++++++.+.
T Consensus 103 ~~~piilv~NK~Dl~~~~~~v~~-------~~~~~------------~--~~~~--~~~~~~~~Sa~~g~gv~~l~~~l~ 159 (198)
T cd04147 103 KFVPIVVVGNKADSLEEERQVPA-------KDALS------------T--VELD--WNCGFVETSAKDNENVLEVFKELL 159 (198)
T ss_pred CCCcEEEEEEccccccccccccH-------HHHHH------------H--HHhh--cCCcEEEecCCCCCCHHHHHHHHH
Confidence 46899999999998653211100 01100 0 0001 135789999999999999999998
Q ss_pred HHHHHHHhhhHHHHHHHHHHH
Q psy7275 84 LAGEDYEKNYRVEWIRLRDEK 104 (150)
Q Consensus 84 e~~~ey~~~y~pe~e~~~~~~ 104 (150)
+.+. -..-..|.++++++.-
T Consensus 160 ~~~~-~~~~~~~~~~~~~~~~ 179 (198)
T cd04147 160 RQAN-LPYNLSPALRRRRESL 179 (198)
T ss_pred HHhh-cccccchhhHHHHhhc
Confidence 7664 2233356666665543
No 32
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=98.15 E-value=7.7e-06 Score=60.19 Aligned_cols=58 Identities=12% Similarity=0.038 Sum_probs=38.6
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK 83 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~ 83 (150)
.++|+|+|+||+|+...... ..+..... ... .+.+++.+||++|.|+++++..|.
T Consensus 106 ~~~piiiv~NK~Dl~~~~~~-----~~~~~~~~------------------~~~--~~~~~~~~Sa~~~~~i~~l~~~l~ 160 (164)
T cd04145 106 DEFPMILVGNKADLEHQRKV-----SREEGQEL------------------ARK--LKIPYIETSAKDRLNVDKAFHDLV 160 (164)
T ss_pred CCCCEEEEeeCcccccccee-----cHHHHHHH------------------HHH--cCCcEEEeeCCCCCCHHHHHHHHH
Confidence 47899999999998653221 00000000 011 136889999999999999999887
Q ss_pred HHH
Q psy7275 84 LAG 86 (150)
Q Consensus 84 e~~ 86 (150)
+.+
T Consensus 161 ~~~ 163 (164)
T cd04145 161 RVI 163 (164)
T ss_pred Hhh
Confidence 653
No 33
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=98.15 E-value=5.7e-06 Score=60.83 Aligned_cols=56 Identities=13% Similarity=0.092 Sum_probs=37.5
Q ss_pred CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHH
Q psy7275 5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKL 84 (150)
Q Consensus 5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e 84 (150)
++|+|+|+||+|+.+..... .++- ..+ ... + +.+++.+||++|.|+++++..+.+
T Consensus 106 ~~piilv~nK~Dl~~~~~~~--~~~~----~~~-----------------~~~-~-~~~~~~~Sa~~~~~v~~l~~~l~~ 160 (163)
T cd04136 106 NVPMVLVGNKCDLEDERVVS--REEG----QAL-----------------ARQ-W-GCPFYETSAKSKINVDEVFADLVR 160 (163)
T ss_pred CCCEEEEEECccccccceec--HHHH----HHH-----------------HHH-c-CCeEEEecCCCCCCHHHHHHHHHH
Confidence 68999999999986532210 0000 000 011 2 268999999999999999998865
Q ss_pred H
Q psy7275 85 A 85 (150)
Q Consensus 85 ~ 85 (150)
.
T Consensus 161 ~ 161 (163)
T cd04136 161 Q 161 (163)
T ss_pred h
Confidence 3
No 34
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=98.14 E-value=7.7e-06 Score=62.13 Aligned_cols=58 Identities=9% Similarity=0.064 Sum_probs=40.2
Q ss_pred CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHH
Q psy7275 5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKL 84 (150)
Q Consensus 5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e 84 (150)
..|+|+|+||+|+.+.+. +.+.+.+. +.....+++.|||++|+|++++++.+.+
T Consensus 91 ~~~ii~v~nK~Dl~~~~~--------~~~~~~~~------------------~~~~~~p~~~~Sa~~g~gi~~l~~~l~~ 144 (158)
T PRK15467 91 SKRQIAVISKTDMPDADV--------AATRKLLL------------------ETGFEEPIFELNSHDPQSVQQLVDYLAS 144 (158)
T ss_pred CCCeEEEEEccccCcccH--------HHHHHHHH------------------HcCCCCCEEEEECCCccCHHHHHHHHHH
Confidence 569999999999854221 11111111 1111258999999999999999999988
Q ss_pred HHHH
Q psy7275 85 AGED 88 (150)
Q Consensus 85 ~~~e 88 (150)
...+
T Consensus 145 ~~~~ 148 (158)
T PRK15467 145 LTKQ 148 (158)
T ss_pred hchh
Confidence 7743
No 35
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.14 E-value=7.5e-06 Score=63.42 Aligned_cols=64 Identities=20% Similarity=0.229 Sum_probs=39.4
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHh-hcCCcEEEeecCCCCCHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEF-YSTLKVVGFSSVSGEGTEELLQLI 82 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~ef-y~~l~vv~VSA~TGeGideL~~~I 82 (150)
.+.|+|+|+||+|+.+.+...+....+ ..+.. .... +....++.|||++|.|+++|+..|
T Consensus 60 ~~~~~ilV~NK~Dl~~~~~~~~~~~~~---~~~~~----------------~~~~~~~~~~i~~vSA~~~~gi~eL~~~l 120 (190)
T cd01855 60 GNNPVILVGNKIDLLPKDKNLVRIKNW---LRAKA----------------AAGLGLKPKDVILISAKKGWGVEELINAI 120 (190)
T ss_pred CCCcEEEEEEchhcCCCCCCHHHHHHH---HHHHH----------------HhhcCCCcccEEEEECCCCCCHHHHHHHH
Confidence 357999999999997543321111100 00000 0000 112368999999999999999999
Q ss_pred HHHH
Q psy7275 83 KLAG 86 (150)
Q Consensus 83 ~e~~ 86 (150)
.+..
T Consensus 121 ~~~l 124 (190)
T cd01855 121 KKLA 124 (190)
T ss_pred HHHh
Confidence 8765
No 36
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.13 E-value=1.1e-05 Score=62.72 Aligned_cols=60 Identities=15% Similarity=0.036 Sum_probs=40.0
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK 83 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~ 83 (150)
.++|+|+|.||+|+.+.... ..+...+.. .-+....++.+||++|.|+++++..|.
T Consensus 109 ~~~piilv~NK~Dl~~~~~~-----~~~~~~~~~-------------------~~~~~~~~~e~Sak~~~~v~e~f~~l~ 164 (201)
T cd04107 109 EPIPCLLLANKCDLKKRLAK-----DGEQMDQFC-------------------KENGFIGWFETSAKEGINIEEAMRFLV 164 (201)
T ss_pred CCCcEEEEEECCCccccccc-----CHHHHHHHH-------------------HHcCCceEEEEeCCCCCCHHHHHHHHH
Confidence 57899999999999642211 111111111 111225789999999999999999998
Q ss_pred HHHH
Q psy7275 84 LAGE 87 (150)
Q Consensus 84 e~~~ 87 (150)
+.+.
T Consensus 165 ~~l~ 168 (201)
T cd04107 165 KNIL 168 (201)
T ss_pred HHHH
Confidence 7663
No 37
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=98.13 E-value=9.7e-06 Score=59.94 Aligned_cols=59 Identities=10% Similarity=-0.024 Sum_probs=39.2
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK 83 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~ 83 (150)
...|+|+|.||+|+.+..... .+..+.. . +.+ +.+++.+||++|.|++++++.|.
T Consensus 104 ~~~pii~v~nK~Dl~~~~~~~-----~~~~~~~------------------~-~~~-~~~~~~~Sa~~~~~i~~l~~~l~ 158 (164)
T smart00173 104 DDVPIVLVGNKCDLESERVVS-----TEEGKEL------------------A-RQW-GCPFLETSAKERVNVDEAFYDLV 158 (164)
T ss_pred CCCCEEEEEECccccccceEc-----HHHHHHH------------------H-HHc-CCEEEEeecCCCCCHHHHHHHHH
Confidence 367999999999986532110 0000000 1 111 36899999999999999999987
Q ss_pred HHHH
Q psy7275 84 LAGE 87 (150)
Q Consensus 84 e~~~ 87 (150)
+.+.
T Consensus 159 ~~~~ 162 (164)
T smart00173 159 REIR 162 (164)
T ss_pred HHHh
Confidence 6543
No 38
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=98.12 E-value=7e-06 Score=71.84 Aligned_cols=69 Identities=22% Similarity=0.088 Sum_probs=46.8
Q ss_pred CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHH
Q psy7275 5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKL 84 (150)
Q Consensus 5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e 84 (150)
..|.|+|+||+|+.+.+...+.+ ..+. ..+....++++|||++|.|+++|++.|.+
T Consensus 275 ~kP~IlVlNKiDl~~~~el~~~l-------~~l~-----------------~~~~~~~~Vi~ISA~tg~GIdeLl~~I~~ 330 (390)
T PRK12298 275 EKPRWLVFNKIDLLDEEEAEERA-------KAIV-----------------EALGWEGPVYLISAASGLGVKELCWDLMT 330 (390)
T ss_pred CCCEEEEEeCCccCChHHHHHHH-------HHHH-----------------HHhCCCCCEEEEECCCCcCHHHHHHHHHH
Confidence 57999999999987543321111 1110 11111247899999999999999999999
Q ss_pred HHHHHHhhhHHHH
Q psy7275 85 AGEDYEKNYRVEW 97 (150)
Q Consensus 85 ~~~ey~~~y~pe~ 97 (150)
.+.+....|.++.
T Consensus 331 ~L~~~~~~~~~~~ 343 (390)
T PRK12298 331 FIEENPREEAEEA 343 (390)
T ss_pred HhhhCcccCCccc
Confidence 8877666565543
No 39
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.12 E-value=5.1e-06 Score=64.18 Aligned_cols=64 Identities=14% Similarity=0.043 Sum_probs=42.9
Q ss_pred CCCCEEEeeecCCCCCchhh-HHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYA-IEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLI 82 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~-~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I 82 (150)
.++|+|+|.||+|+..+... .++. ..+ ...+ +.+++.+||++|.|+++++..|
T Consensus 105 ~~~piiiv~NK~Dl~~~~~~~~~~~-------~~l-----------------~~~~--~~~~~e~Sa~~~~~v~~l~~~l 158 (191)
T cd04112 105 EDVVIMLLGNKADMSGERVVKREDG-------ERL-----------------AKEY--GVPFMETSAKTGLNVELAFTAV 158 (191)
T ss_pred CCCcEEEEEEcccchhccccCHHHH-------HHH-----------------HHHc--CCeEEEEeCCCCCCHHHHHHHH
Confidence 46899999999998643221 0100 010 0111 3589999999999999999999
Q ss_pred HHHHHHHHhhh
Q psy7275 83 KLAGEDYEKNY 93 (150)
Q Consensus 83 ~e~~~ey~~~y 93 (150)
.+.+.+-..+|
T Consensus 159 ~~~~~~~~~~~ 169 (191)
T cd04112 159 AKELKHRKYEQ 169 (191)
T ss_pred HHHHHHhcccc
Confidence 88775544444
No 40
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.12 E-value=5.9e-06 Score=67.72 Aligned_cols=54 Identities=17% Similarity=0.222 Sum_probs=38.9
Q ss_pred CCCCEEEeeecCCCCCchhh-HHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYA-IEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLI 82 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~-~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I 82 (150)
.++|+|+|+||+|+.+.... .+|+..+. . .+.+++.+||++|+|+++|+..+
T Consensus 66 ~~i~~vIV~NK~DL~~~~~~~~~~~~~~~-------------------------~--~g~~v~~~SAktg~gi~eLf~~l 118 (245)
T TIGR00157 66 QNIEPIIVLNKIDLLDDEDMEKEQLDIYR-------------------------N--IGYQVLMTSSKNQDGLKELIEAL 118 (245)
T ss_pred CCCCEEEEEECcccCCCHHHHHHHHHHHH-------------------------H--CCCeEEEEecCCchhHHHHHhhh
Confidence 57899999999999754332 13332110 1 24688999999999999999888
Q ss_pred HH
Q psy7275 83 KL 84 (150)
Q Consensus 83 ~e 84 (150)
..
T Consensus 119 ~~ 120 (245)
T TIGR00157 119 QN 120 (245)
T ss_pred cC
Confidence 64
No 41
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=98.11 E-value=7.2e-06 Score=70.86 Aligned_cols=68 Identities=25% Similarity=0.358 Sum_probs=45.0
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK 83 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~ 83 (150)
.+.|+|+|+||+|+...... ++.+...+.. .+ .+....+++++||++|.|++++++.+.
T Consensus 282 ~~~~iiiv~NK~Dl~~~~~~------~~~~~~~~~~--------------~~-~~~~~~~vi~~SA~~g~~v~~l~~~i~ 340 (429)
T TIGR03594 282 AGKALVIVVNKWDLVKDEKT------REEFKKELRR--------------KL-PFLDFAPIVFISALTGQGVDKLLDAID 340 (429)
T ss_pred cCCcEEEEEECcccCCCHHH------HHHHHHHHHH--------------hc-ccCCCCceEEEeCCCCCCHHHHHHHHH
Confidence 46899999999999732211 1111222210 00 122346999999999999999999999
Q ss_pred HHHHHHHhh
Q psy7275 84 LAGEDYEKN 92 (150)
Q Consensus 84 e~~~ey~~~ 92 (150)
+..+.+...
T Consensus 341 ~~~~~~~~~ 349 (429)
T TIGR03594 341 EVYENANRR 349 (429)
T ss_pred HHHHHhcCc
Confidence 887766443
No 42
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=98.11 E-value=6.7e-06 Score=60.76 Aligned_cols=68 Identities=25% Similarity=0.317 Sum_probs=42.4
Q ss_pred CCCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHH
Q psy7275 3 DTGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLI 82 (150)
Q Consensus 3 k~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I 82 (150)
+.++|+|+|+||+|+.+... . .+.+.+.. +... ..+.+....+++++||.+|+|++++++.|
T Consensus 100 ~~~~p~ivv~NK~Dl~~~~~-~-------~~~~~~~~---~~~~-------~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 161 (168)
T cd01887 100 AANVPFIVALNKIDKPNANP-E-------RVKNELSE---LGLQ-------GEDEWGGDVQIVPTSAKTGEGIDDLLEAI 161 (168)
T ss_pred HcCCCEEEEEEceecccccH-H-------HHHHHHHH---hhcc-------ccccccCcCcEEEeecccCCCHHHHHHHH
Confidence 35789999999999864321 1 11111110 0000 00012234689999999999999999999
Q ss_pred HHHHHH
Q psy7275 83 KLAGED 88 (150)
Q Consensus 83 ~e~~~e 88 (150)
.+...+
T Consensus 162 ~~~~~~ 167 (168)
T cd01887 162 LLLAEK 167 (168)
T ss_pred HHhhhc
Confidence 877643
No 43
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=98.10 E-value=3.3e-06 Score=62.69 Aligned_cols=57 Identities=21% Similarity=0.217 Sum_probs=37.2
Q ss_pred CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHh-hcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275 5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEF-YSTLKVVGFSSVSGEGTEELLQLIK 83 (150)
Q Consensus 5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~ef-y~~l~vv~VSA~TGeGideL~~~I~ 83 (150)
+.|+|+|+||+|+.+.... +.+.+.+. ...+ -.+.+++++||++|.|++++++.+.
T Consensus 100 ~~piiiv~nK~Dl~~~~~~-------~~i~~~~~----------------~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 156 (158)
T cd04151 100 GAVLLVFANKQDMPGALSE-------AEISEKLG----------------LSELKDRTWSIFKTSAIKGEGLDEGMDWLV 156 (158)
T ss_pred CCcEEEEEeCCCCCCCCCH-------HHHHHHhC----------------ccccCCCcEEEEEeeccCCCCHHHHHHHHh
Confidence 6899999999998654311 11111111 0011 0124799999999999999999875
Q ss_pred H
Q psy7275 84 L 84 (150)
Q Consensus 84 e 84 (150)
+
T Consensus 157 ~ 157 (158)
T cd04151 157 N 157 (158)
T ss_pred c
Confidence 4
No 44
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=98.09 E-value=9.1e-06 Score=61.85 Aligned_cols=31 Identities=16% Similarity=0.050 Sum_probs=26.4
Q ss_pred cEEEeecCCCCCHHHHHHHHHHHHHHHHhhh
Q psy7275 63 KVVGFSSVSGEGTEELLQLIKLAGEDYEKNY 93 (150)
Q Consensus 63 ~vv~VSA~TGeGideL~~~I~e~~~ey~~~y 93 (150)
+++.+||++|.|+++++..+.+.+......+
T Consensus 143 ~~~e~Sa~~~~~v~~~f~~l~~~~~~~~~~~ 173 (187)
T cd04132 143 AYLECSAKTMENVEEVFDTAIEEALKKEGKA 173 (187)
T ss_pred EEEEccCCCCCCHHHHHHHHHHHHHhhhhhh
Confidence 7899999999999999999988876555444
No 45
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=98.09 E-value=7.7e-06 Score=61.25 Aligned_cols=74 Identities=23% Similarity=0.173 Sum_probs=41.6
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK 83 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~ 83 (150)
.+.|+++|+||+|+...+......+ ...+.+........ ... . ..+....+++++||++|.|+++++..+.
T Consensus 113 ~~~~i~iv~nK~D~~~~~~~~~~~~---~~~~~~~~~~~~~~---~~~--~-~~~~~~~~v~~~Sa~~g~gi~~l~~~l~ 183 (189)
T cd00881 113 GGLPIIVAINKIDRVGEEDLEEVLR---EIKELLGLIGFIST---KEE--G-TRNGLLVPIVPGSALTGIGVEELLEAIV 183 (189)
T ss_pred CCCCeEEEEECCCCcchhcHHHHHH---HHHHHHccccccch---hhh--h-cccCCcceEEEEecccCcCHHHHHHHHH
Confidence 4789999999999986332211111 11111110000000 000 0 0012356899999999999999999987
Q ss_pred HHH
Q psy7275 84 LAG 86 (150)
Q Consensus 84 e~~ 86 (150)
..+
T Consensus 184 ~~l 186 (189)
T cd00881 184 EHL 186 (189)
T ss_pred hhC
Confidence 653
No 46
>PRK15494 era GTPase Era; Provisional
Probab=98.09 E-value=3.7e-06 Score=71.89 Aligned_cols=100 Identities=16% Similarity=0.115 Sum_probs=66.7
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK 83 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~ 83 (150)
.+.|.|+|+||+|+.+.. . +...+.+ .+......+++|||++|.|+++|++.|.
T Consensus 159 ~~~p~IlViNKiDl~~~~-----~---~~~~~~l------------------~~~~~~~~i~~iSAktg~gv~eL~~~L~ 212 (339)
T PRK15494 159 LNIVPIFLLNKIDIESKY-----L---NDIKAFL------------------TENHPDSLLFPISALSGKNIDGLLEYIT 212 (339)
T ss_pred cCCCEEEEEEhhcCcccc-----H---HHHHHHH------------------HhcCCCcEEEEEeccCccCHHHHHHHHH
Confidence 456899999999985421 1 1111111 1112235799999999999999999999
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHhhCCCCCCCCccc
Q psy7275 84 LAGEDYEKNYRVEWIRLRDEKAKSEQLEKREQHFALPTPQPLWASC 129 (150)
Q Consensus 84 e~~~ey~~~y~pe~e~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 129 (150)
+.+.+-...|.++.--=+.++.-..+-=+++-+..+...++-+.+.
T Consensus 213 ~~l~~~~~~~~~~~~td~~~~~~~~eiiRe~~~~~~~~EiP~~~~v 258 (339)
T PRK15494 213 SKAKISPWLYAEDDITDLPMRFIAAEITREQLFLNLQKELPYKLTV 258 (339)
T ss_pred HhCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhCCcccCceEEE
Confidence 9988777777666544444454555555667788888876654443
No 47
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=98.08 E-value=6.5e-06 Score=66.63 Aligned_cols=77 Identities=17% Similarity=0.245 Sum_probs=42.4
Q ss_pred CCCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhch----hh-h---hhhHHHHHHHHHHhhcCCcEEEeecCCCCC
Q psy7275 3 DTGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADS----SY-I---SNLTRSMSLALDEFYSTLKVVGFSSVSGEG 74 (150)
Q Consensus 3 k~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~----~y-~---~~L~~slsl~l~efy~~l~vv~VSA~TGeG 74 (150)
..++|+|+|+||+|+.+.+...+ ..+.+.+.+.... .+ . ...+... ....+....+++.|||+||+|
T Consensus 136 ~~~ip~ivvvNK~D~~~~~~~~~---~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~--~~~~~~~~~pi~~vSavtg~G 210 (224)
T cd04165 136 ALNIPVFVVVTKIDLAPANILQE---TLKDLKRILKVPGVRKLPVPVKSDDDVVLAA--SNFSSERIVPIFQVSNVTGEG 210 (224)
T ss_pred HcCCCEEEEEECccccCHHHHHH---HHHHHHHHhcCCCccccceeeecccceeehh--hcCCccccCcEEEeeCCCccC
Confidence 46789999999999876543222 1222223322100 00 0 0000000 000122345999999999999
Q ss_pred HHHHHHHHHH
Q psy7275 75 TEELLQLIKL 84 (150)
Q Consensus 75 ideL~~~I~e 84 (150)
+++|...|..
T Consensus 211 i~~L~~~L~~ 220 (224)
T cd04165 211 LDLLHAFLNL 220 (224)
T ss_pred HHHHHHHHHh
Confidence 9999988864
No 48
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=98.08 E-value=1.4e-05 Score=59.86 Aligned_cols=29 Identities=21% Similarity=0.188 Sum_probs=25.3
Q ss_pred CCcEEEeecCCCCCHHHHHHHHHHHHHHH
Q psy7275 61 TLKVVGFSSVSGEGTEELLQLIKLAGEDY 89 (150)
Q Consensus 61 ~l~vv~VSA~TGeGideL~~~I~e~~~ey 89 (150)
+.+++.+||++|.|++++++.+.+.+.+|
T Consensus 132 ~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~ 160 (161)
T cd04124 132 NLPLYYVSAADGTNVVKLFQDAIKLAVSY 160 (161)
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHHHhc
Confidence 46899999999999999999998776655
No 49
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=98.08 E-value=9.7e-06 Score=58.98 Aligned_cols=22 Identities=27% Similarity=0.431 Sum_probs=19.5
Q ss_pred CcEEEeecCCCCCHHHHHHHHH
Q psy7275 62 LKVVGFSSVSGEGTEELLQLIK 83 (150)
Q Consensus 62 l~vv~VSA~TGeGideL~~~I~ 83 (150)
.+++.+||++|.|+++++..+.
T Consensus 120 ~~~~~~Sa~~~~gi~~l~~~l~ 141 (142)
T TIGR02528 120 EPIFEISSVDEQGLEALVDYLN 141 (142)
T ss_pred CcEEEEecCCCCCHHHHHHHHh
Confidence 3789999999999999998873
No 50
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=98.08 E-value=1.3e-05 Score=60.26 Aligned_cols=58 Identities=17% Similarity=0.251 Sum_probs=37.4
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK 83 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~ 83 (150)
.++|+|+|+||+|+.+.... ...+.+. ..+ . ....+++.+||++|+|++++++.+.
T Consensus 118 ~~~~iiiv~NK~Dl~~~~~~--------~~~~~~~----------~~~-----~-~~~~~~~~~Sa~~g~gi~~l~~~l~ 173 (179)
T cd01890 118 NNLEIIPVINKIDLPSADPE--------RVKQQIE----------DVL-----G-LDPSEAILVSAKTGLGVEDLLEAIV 173 (179)
T ss_pred cCCCEEEEEECCCCCcCCHH--------HHHHHHH----------HHh-----C-CCcccEEEeeccCCCCHHHHHHHHH
Confidence 46899999999998643221 0011111 000 0 1113589999999999999999987
Q ss_pred HH
Q psy7275 84 LA 85 (150)
Q Consensus 84 e~ 85 (150)
+.
T Consensus 174 ~~ 175 (179)
T cd01890 174 ER 175 (179)
T ss_pred hh
Confidence 64
No 51
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=98.08 E-value=1e-05 Score=59.24 Aligned_cols=62 Identities=21% Similarity=0.365 Sum_probs=40.3
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK 83 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~ 83 (150)
.+.|+|+|+||+|+.+.... ..+.....+... + ......+++++||++|+|++++++.+.
T Consensus 112 ~~~~~iiv~nK~Dl~~~~~~-----~~~~~~~~~~~~--------------~-~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 171 (174)
T cd01895 112 EGKALVIVVNKWDLVEKDSK-----TMKEFKKEIRRK--------------L-PFLDYAPIVFISALTGQGVDKLFDAID 171 (174)
T ss_pred cCCCEEEEEeccccCCccHH-----HHHHHHHHHHhh--------------c-ccccCCceEEEeccCCCCHHHHHHHHH
Confidence 46899999999999765310 011111222110 0 011246899999999999999999987
Q ss_pred HH
Q psy7275 84 LA 85 (150)
Q Consensus 84 e~ 85 (150)
++
T Consensus 172 ~~ 173 (174)
T cd01895 172 EV 173 (174)
T ss_pred Hh
Confidence 64
No 52
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=98.08 E-value=1e-05 Score=69.18 Aligned_cols=56 Identities=23% Similarity=0.280 Sum_probs=39.1
Q ss_pred CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHH
Q psy7275 5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKL 84 (150)
Q Consensus 5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e 84 (150)
+.|+|+|+||+|+.+.....++ .+.+. ++ + ..++++|||++|+|+++++..|.+
T Consensus 273 ~kp~IIV~NK~DL~~~~~~~~~-------~~~l~-----------------~~-~-~~~vi~iSAktg~GI~eL~~~I~~ 326 (329)
T TIGR02729 273 EKPRIVVLNKIDLLDEEELAEL-------LKELK-----------------KA-L-GKPVFPISALTGEGLDELLYALAE 326 (329)
T ss_pred cCCEEEEEeCccCCChHHHHHH-------HHHHH-----------------HH-c-CCcEEEEEccCCcCHHHHHHHHHH
Confidence 6799999999999754321111 11111 01 1 358999999999999999999876
Q ss_pred HH
Q psy7275 85 AG 86 (150)
Q Consensus 85 ~~ 86 (150)
.+
T Consensus 327 ~l 328 (329)
T TIGR02729 327 LL 328 (329)
T ss_pred Hh
Confidence 53
No 53
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=98.07 E-value=1.5e-05 Score=59.86 Aligned_cols=62 Identities=15% Similarity=0.043 Sum_probs=40.3
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK 83 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~ 83 (150)
.++|+|+|+||+|+.+..... +.+..... ....|....+++.+||++|.|+++++..+.
T Consensus 102 ~~~pviiv~nK~Dl~~~~~~~----~~~~~~~~-----------------~~~~~~~~~~~~e~Sa~~~~~v~~lf~~~~ 160 (166)
T cd01893 102 VKVPIILVGNKSDLRDGSSQA----GLEEEMLP-----------------IMNEFREIETCVECSAKTLINVSEVFYYAQ 160 (166)
T ss_pred CCCCEEEEEEchhcccccchh----HHHHHHHH-----------------HHHHHhcccEEEEeccccccCHHHHHHHHH
Confidence 468999999999996543210 00000000 112232223789999999999999999998
Q ss_pred HHH
Q psy7275 84 LAG 86 (150)
Q Consensus 84 e~~ 86 (150)
+.+
T Consensus 161 ~~~ 163 (166)
T cd01893 161 KAV 163 (166)
T ss_pred HHh
Confidence 765
No 54
>PRK04004 translation initiation factor IF-2; Validated
Probab=98.07 E-value=1.5e-05 Score=73.11 Aligned_cols=35 Identities=29% Similarity=0.489 Sum_probs=28.2
Q ss_pred HHhhcCCcEEEeecCCCCCHHHHHHHHHHHHHHHH
Q psy7275 56 DEFYSTLKVVGFSSVSGEGTEELLQLIKLAGEDYE 90 (150)
Q Consensus 56 ~efy~~l~vv~VSA~TGeGideL~~~I~e~~~ey~ 90 (150)
.+|+..+++++|||+||+|+++|++.+...+++|.
T Consensus 187 ~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~~~~l 221 (586)
T PRK04004 187 KDFTKTVAIVPVSAKTGEGIPDLLMVLAGLAQRYL 221 (586)
T ss_pred hccCCCceEeeccCCCCCChHHHHHHHHHHHHHHH
Confidence 35667789999999999999999998866555443
No 55
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=98.06 E-value=1.4e-05 Score=58.90 Aligned_cols=56 Identities=14% Similarity=0.189 Sum_probs=37.7
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK 83 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~ 83 (150)
.++|+|+|+||+|+........ ++...+. +- .+.+++.+||++|.|+++++..|.
T Consensus 105 ~~~p~iiv~nK~Dl~~~~~v~~--~~~~~~~----------------------~~-~~~~~~~~Sa~~~~~v~~l~~~l~ 159 (162)
T cd04106 105 GDIPMVLVQTKIDLLDQAVITN--EEAEALA----------------------KR-LQLPLFRTSVKDDFNVTELFEYLA 159 (162)
T ss_pred CCCCEEEEEEChhcccccCCCH--HHHHHHH----------------------HH-cCCeEEEEECCCCCCHHHHHHHHH
Confidence 3689999999999865432100 0000000 11 145899999999999999999886
Q ss_pred H
Q psy7275 84 L 84 (150)
Q Consensus 84 e 84 (150)
.
T Consensus 160 ~ 160 (162)
T cd04106 160 E 160 (162)
T ss_pred H
Confidence 5
No 56
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.06 E-value=1.2e-05 Score=59.83 Aligned_cols=58 Identities=22% Similarity=0.196 Sum_probs=38.3
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK 83 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~ 83 (150)
.++|+|+|.||+|+...... ..+ ++.. +.+.+....++.+||++|.|++++++.+.
T Consensus 107 ~~~p~ivv~nK~Dl~~~~~~-----~~~---~~~~----------------~~~~~~~~~~~e~Sa~~~~~v~~~~~~l~ 162 (165)
T cd01864 107 SNVVLLLIGNKCDLEEQREV-----LFE---EACT----------------LAEKNGMLAVLETSAKESQNVEEAFLLMA 162 (165)
T ss_pred CCCcEEEEEECccccccccc-----CHH---HHHH----------------HHHHcCCcEEEEEECCCCCCHHHHHHHHH
Confidence 46899999999998654221 000 1100 11112234789999999999999999887
Q ss_pred HH
Q psy7275 84 LA 85 (150)
Q Consensus 84 e~ 85 (150)
+.
T Consensus 163 ~~ 164 (165)
T cd01864 163 TE 164 (165)
T ss_pred Hh
Confidence 53
No 57
>PRK00093 GTP-binding protein Der; Reviewed
Probab=98.05 E-value=1e-05 Score=70.23 Aligned_cols=68 Identities=26% Similarity=0.395 Sum_probs=46.1
Q ss_pred CCCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHH
Q psy7275 3 DTGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLI 82 (150)
Q Consensus 3 k~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I 82 (150)
+.+.|+|+|+||+|+.+.+...++ .+.+.. . + .+....+++++||++|.|++++++.+
T Consensus 282 ~~~~~~ivv~NK~Dl~~~~~~~~~-------~~~~~~----------~----l-~~~~~~~i~~~SA~~~~gv~~l~~~i 339 (435)
T PRK00093 282 EAGRALVIVVNKWDLVDEKTMEEF-------KKELRR----------R----L-PFLDYAPIVFISALTGQGVDKLLEAI 339 (435)
T ss_pred HcCCcEEEEEECccCCCHHHHHHH-------HHHHHH----------h----c-ccccCCCEEEEeCCCCCCHHHHHHHH
Confidence 346899999999999754332111 111110 0 0 12235799999999999999999999
Q ss_pred HHHHHHHHhh
Q psy7275 83 KLAGEDYEKN 92 (150)
Q Consensus 83 ~e~~~ey~~~ 92 (150)
....+++...
T Consensus 340 ~~~~~~~~~~ 349 (435)
T PRK00093 340 DEAYENANRR 349 (435)
T ss_pred HHHHHHHcCc
Confidence 9887766543
No 58
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=98.05 E-value=1.1e-05 Score=59.16 Aligned_cols=58 Identities=17% Similarity=0.153 Sum_probs=38.6
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK 83 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~ 83 (150)
.+.|+|+|.||+|+.+.... +.+..... ..+ .+.+++.+||++|+|++++++.|.
T Consensus 109 ~~~piilv~nK~Dl~~~~~~-----~~~~~~~~------------------~~~--~~~~~~~~Sa~~~~gi~~l~~~l~ 163 (168)
T cd04119 109 ENIVVVVCANKIDLTKHRAV-----SEDEGRLW------------------AES--KGFKYFETSACTGEGVNEMFQTLF 163 (168)
T ss_pred CCceEEEEEEchhccccccc-----CHHHHHHH------------------HHH--cCCeEEEEECCCCCCHHHHHHHHH
Confidence 46899999999998642211 00100110 011 136889999999999999999987
Q ss_pred HHH
Q psy7275 84 LAG 86 (150)
Q Consensus 84 e~~ 86 (150)
+.+
T Consensus 164 ~~l 166 (168)
T cd04119 164 SSI 166 (168)
T ss_pred HHH
Confidence 654
No 59
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=98.05 E-value=8.4e-06 Score=60.51 Aligned_cols=56 Identities=23% Similarity=0.176 Sum_probs=40.1
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK 83 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~ 83 (150)
.+.|+|+|+||+|+.+.....+|. .. ...+....+++.+||++|.|++++++.+.
T Consensus 119 ~~~p~ivv~NK~Dl~~~~~~~~~~--------~~-----------------~~~~~~~~~~~~~Sa~~~~gl~~l~~~l~ 173 (176)
T cd01881 119 TAKPVIYVLNKIDLDDAEELEEEL--------VR-----------------ELALEEGAEVVPISAKTEEGLDELIRAIY 173 (176)
T ss_pred hhCCeEEEEEchhcCchhHHHHHH--------HH-----------------HHhcCCCCCEEEEehhhhcCHHHHHHHHH
Confidence 468999999999997655433321 00 01123356899999999999999999875
Q ss_pred H
Q psy7275 84 L 84 (150)
Q Consensus 84 e 84 (150)
.
T Consensus 174 ~ 174 (176)
T cd01881 174 E 174 (176)
T ss_pred h
Confidence 4
No 60
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=98.04 E-value=1.3e-05 Score=57.82 Aligned_cols=57 Identities=23% Similarity=0.325 Sum_probs=39.6
Q ss_pred CCCCEEEeeecCCCCC-chhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVN-HKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLI 82 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~-~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I 82 (150)
.+.|+++|+||+|+.. ++...+|+. .+. ......+++.+|+++|.|+++|++.|
T Consensus 110 ~~~~~iiv~nK~Dl~~~~~~~~~~~~-------~~~------------------~~~~~~~~~~~s~~~~~~~~~l~~~l 164 (168)
T cd04163 110 SKTPVILVLNKIDLVKDKEDLLPLLE-------KLK------------------ELGPFAEIFPISALKGENVDELLEEI 164 (168)
T ss_pred hCCCEEEEEEchhccccHHHHHHHHH-------HHH------------------hccCCCceEEEEeccCCChHHHHHHH
Confidence 3579999999999974 333333331 111 11224588999999999999999998
Q ss_pred HHH
Q psy7275 83 KLA 85 (150)
Q Consensus 83 ~e~ 85 (150)
.+.
T Consensus 165 ~~~ 167 (168)
T cd04163 165 VKY 167 (168)
T ss_pred Hhh
Confidence 753
No 61
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=98.04 E-value=1.9e-05 Score=59.55 Aligned_cols=57 Identities=11% Similarity=-0.016 Sum_probs=38.5
Q ss_pred CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHH
Q psy7275 5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKL 84 (150)
Q Consensus 5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e 84 (150)
+.|+|+|.||+|+.+..... .+...+. ..+ .+++++.+||++|.|++++++.+.+
T Consensus 120 ~~piiiv~nK~Dl~~~~~v~-----~~~~~~~------------------~~~--~~~~~~e~Sak~~~~v~~l~~~l~~ 174 (180)
T cd04127 120 NPDIVLCGNKADLEDQRQVS-----EEQAKAL------------------ADK--YGIPYFETSAATGTNVEKAVERLLD 174 (180)
T ss_pred CCcEEEEEeCccchhcCccC-----HHHHHHH------------------HHH--cCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 67999999999986532210 0000110 011 1468899999999999999999876
Q ss_pred HH
Q psy7275 85 AG 86 (150)
Q Consensus 85 ~~ 86 (150)
.+
T Consensus 175 ~~ 176 (180)
T cd04127 175 LV 176 (180)
T ss_pred HH
Confidence 54
No 62
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=98.04 E-value=1e-05 Score=72.35 Aligned_cols=62 Identities=15% Similarity=0.108 Sum_probs=39.7
Q ss_pred CC-CEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275 5 GF-PYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK 83 (150)
Q Consensus 5 ~l-P~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~ 83 (150)
++ |+|+|+||+|+.+.+...+-+ +.+.+.+ .. .+....++++|||++|+|++.|+++|.
T Consensus 170 gi~~iIVvlNKiDlv~~~~~~~~~---~ei~~~l-----------~~------~~~~~~~iipVSA~~G~nI~~Ll~~L~ 229 (460)
T PTZ00327 170 KLKHIIILQNKIDLVKEAQAQDQY---EEIRNFV-----------KG------TIADNAPIIPISAQLKYNIDVVLEYIC 229 (460)
T ss_pred CCCcEEEEEecccccCHHHHHHHH---HHHHHHH-----------Hh------hccCCCeEEEeeCCCCCCHHHHHHHHH
Confidence 44 578999999997644322211 1111111 00 122456999999999999999999988
Q ss_pred HHH
Q psy7275 84 LAG 86 (150)
Q Consensus 84 e~~ 86 (150)
+.+
T Consensus 230 ~~l 232 (460)
T PTZ00327 230 TQI 232 (460)
T ss_pred hhC
Confidence 643
No 63
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=98.04 E-value=1.9e-05 Score=58.69 Aligned_cols=58 Identities=14% Similarity=0.145 Sum_probs=39.2
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK 83 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~ 83 (150)
.++|+|+|.||+|+...... . .+ ++.. + ... .+.+++.+||++|+|+++++..+.
T Consensus 106 ~~~~~iiv~nK~Dl~~~~~~-~----~~---~~~~--------~-------~~~--~~~~~~~~Sa~~~~~v~~~~~~i~ 160 (166)
T cd01869 106 ENVNKLLVGNKCDLTDKRVV-D----YS---EAQE--------F-------ADE--LGIPFLETSAKNATNVEQAFMTMA 160 (166)
T ss_pred CCCcEEEEEEChhcccccCC-C----HH---HHHH--------H-------HHH--cCCeEEEEECCCCcCHHHHHHHHH
Confidence 36899999999998653321 0 01 1100 0 001 146899999999999999999987
Q ss_pred HHH
Q psy7275 84 LAG 86 (150)
Q Consensus 84 e~~ 86 (150)
+.+
T Consensus 161 ~~~ 163 (166)
T cd01869 161 REI 163 (166)
T ss_pred HHH
Confidence 755
No 64
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=98.03 E-value=1.6e-05 Score=59.49 Aligned_cols=56 Identities=14% Similarity=0.048 Sum_probs=37.3
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK 83 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~ 83 (150)
.++|+|+|.||+|+....... .+ ++.. + ... ...+++.+||++|+|+++++..|.
T Consensus 107 ~~~piilv~nK~Dl~~~~~v~-----~~---~~~~--------~-------~~~--~~~~~~e~SA~~g~~v~~~f~~l~ 161 (165)
T cd04140 107 EKIPIMLVGNKCDESHKREVS-----SN---EGAA--------C-------ATE--WNCAFMETSAKTNHNVQELFQELL 161 (165)
T ss_pred CCCCEEEEEECccccccCeec-----HH---HHHH--------H-------HHH--hCCcEEEeecCCCCCHHHHHHHHH
Confidence 468999999999986522210 00 1100 0 001 135889999999999999999886
Q ss_pred H
Q psy7275 84 L 84 (150)
Q Consensus 84 e 84 (150)
+
T Consensus 162 ~ 162 (165)
T cd04140 162 N 162 (165)
T ss_pred h
Confidence 5
No 65
>COG1159 Era GTPase [General function prediction only]
Probab=98.03 E-value=1.6e-05 Score=67.70 Aligned_cols=98 Identities=21% Similarity=0.224 Sum_probs=69.4
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK 83 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~ 83 (150)
++.|+|+++||+|...++... ..+.+.+. .-....++++|||++|.|++.|.+.+.
T Consensus 113 ~~~pvil~iNKID~~~~~~~l------~~~~~~~~------------------~~~~f~~ivpiSA~~g~n~~~L~~~i~ 168 (298)
T COG1159 113 TKTPVILVVNKIDKVKPKTVL------LKLIAFLK------------------KLLPFKEIVPISALKGDNVDTLLEIIK 168 (298)
T ss_pred cCCCeEEEEEccccCCcHHHH------HHHHHHHH------------------hhCCcceEEEeeccccCCHHHHHHHHH
Confidence 367999999999988776520 01111111 112334999999999999999999999
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHhhCCCCCCC
Q psy7275 84 LAGEDYEKNYRVEWIRLRDEKAKSEQLEKREQHFALPTPQPL 125 (150)
Q Consensus 84 e~~~ey~~~y~pe~e~~~~~~~~~~~~~~~~~~~~l~~~~~~ 125 (150)
..+.|-...|.+++---+.++--..+--+++-+..+...++-
T Consensus 169 ~~Lpeg~~~yp~d~itD~~~rf~~aEiiREk~~~~l~eElPh 210 (298)
T COG1159 169 EYLPEGPWYYPEDQITDRPERFLAAEIIREKLLLLLREELPH 210 (298)
T ss_pred HhCCCCCCcCChhhccCChHHHHHHHHHHHHHHHhcccccCc
Confidence 999988888877766556666555555666667777776543
No 66
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=98.03 E-value=1.4e-05 Score=72.39 Aligned_cols=60 Identities=22% Similarity=0.225 Sum_probs=42.9
Q ss_pred CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHH
Q psy7275 5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKL 84 (150)
Q Consensus 5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e 84 (150)
..|+|+|+||+|+.+.....+++ ...+ .+ ...++++|||++|+|+++|+.+|.+
T Consensus 284 ~kP~IVVlNKiDL~da~el~e~l------~~~l------------------~~--~g~~Vf~ISA~tgeGLdEL~~~L~e 337 (500)
T PRK12296 284 ERPRLVVLNKIDVPDARELAEFV------RPEL------------------EA--RGWPVFEVSAASREGLRELSFALAE 337 (500)
T ss_pred CCCEEEEEECccchhhHHHHHHH------HHHH------------------HH--cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 57999999999986443221111 1111 11 1468999999999999999999999
Q ss_pred HHHHHH
Q psy7275 85 AGEDYE 90 (150)
Q Consensus 85 ~~~ey~ 90 (150)
.+.++.
T Consensus 338 ll~~~r 343 (500)
T PRK12296 338 LVEEAR 343 (500)
T ss_pred HHHhhh
Confidence 887654
No 67
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=98.03 E-value=2.4e-05 Score=58.47 Aligned_cols=58 Identities=16% Similarity=0.092 Sum_probs=38.3
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK 83 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~ 83 (150)
.+.|+|+|.||+|+.+.... ..+...+. ..+ .+.+++.+||++|+|+++++..+.
T Consensus 106 ~~~~iiiv~nK~Dl~~~~~~-----~~~~~~~~------------------~~~--~~~~~~e~Sa~~~~~i~e~f~~l~ 160 (166)
T cd04122 106 PNTVIFLIGNKADLEAQRDV-----TYEEAKQF------------------ADE--NGLLFLECSAKTGENVEDAFLETA 160 (166)
T ss_pred CCCeEEEEEECcccccccCc-----CHHHHHHH------------------HHH--cCCEEEEEECCCCCCHHHHHHHHH
Confidence 46799999999998654321 00100110 011 246899999999999999988876
Q ss_pred HHH
Q psy7275 84 LAG 86 (150)
Q Consensus 84 e~~ 86 (150)
..+
T Consensus 161 ~~~ 163 (166)
T cd04122 161 KKI 163 (166)
T ss_pred HHH
Confidence 544
No 68
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=98.02 E-value=1.7e-05 Score=61.15 Aligned_cols=58 Identities=16% Similarity=0.051 Sum_probs=38.6
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK 83 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~ 83 (150)
.+.|+|+|.||+|+....... .+ +... + ... + +.+++.+||++|.|+++++..+.
T Consensus 105 ~~~piilvgNK~Dl~~~~~v~-----~~---~~~~--------~-------~~~-~-~~~~~e~SAk~~~~v~~l~~~l~ 159 (190)
T cd04144 105 ADVPIMIVGNKCDKVYEREVS-----TE---EGAA--------L-------ARR-L-GCEFIEASAKTNVNVERAFYTLV 159 (190)
T ss_pred CCCCEEEEEEChhccccCccC-----HH---HHHH--------H-------HHH-h-CCEEEEecCCCCCCHHHHHHHHH
Confidence 468999999999986432210 00 0000 0 011 1 35889999999999999999997
Q ss_pred HHH
Q psy7275 84 LAG 86 (150)
Q Consensus 84 e~~ 86 (150)
+.+
T Consensus 160 ~~l 162 (190)
T cd04144 160 RAL 162 (190)
T ss_pred HHH
Confidence 655
No 69
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.01 E-value=1.6e-05 Score=60.88 Aligned_cols=55 Identities=24% Similarity=0.320 Sum_probs=38.8
Q ss_pred CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHH
Q psy7275 5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKL 84 (150)
Q Consensus 5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e 84 (150)
+.|.|+|+||+|+.+.+...+|++ .+. . ...+++.+||.+|.|+++|...+.+
T Consensus 46 ~k~~ilVlNK~Dl~~~~~~~~~~~-------~~~------------------~--~~~~vi~iSa~~~~gi~~L~~~l~~ 98 (171)
T cd01856 46 NKPRIIVLNKADLADPKKTKKWLK-------YFE------------------S--KGEKVLFVNAKSGKGVKKLLKAAKK 98 (171)
T ss_pred CCCEEEEEehhhcCChHHHHHHHH-------HHH------------------h--cCCeEEEEECCCcccHHHHHHHHHH
Confidence 569999999999965433223331 110 0 1247899999999999999999877
Q ss_pred HH
Q psy7275 85 AG 86 (150)
Q Consensus 85 ~~ 86 (150)
..
T Consensus 99 ~l 100 (171)
T cd01856 99 LL 100 (171)
T ss_pred HH
Confidence 54
No 70
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=98.01 E-value=2.1e-05 Score=58.29 Aligned_cols=56 Identities=13% Similarity=0.085 Sum_probs=37.8
Q ss_pred CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHH
Q psy7275 5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKL 84 (150)
Q Consensus 5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e 84 (150)
++|+|+|.||+|+...... .. +..+... .+ ...+++.+||++|.|++++++.+..
T Consensus 108 ~~pi~vv~nK~Dl~~~~~~--~~---~~~~~~~------------------~~--~~~~~~~~Sa~~~~~v~~l~~~l~~ 162 (165)
T cd01868 108 NIVIMLVGNKSDLRHLRAV--PT---EEAKAFA------------------EK--NGLSFIETSALDGTNVEEAFKQLLT 162 (165)
T ss_pred CCeEEEEEECccccccccC--CH---HHHHHHH------------------HH--cCCEEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999998653221 00 1111110 01 2468999999999999999999875
Q ss_pred H
Q psy7275 85 A 85 (150)
Q Consensus 85 ~ 85 (150)
.
T Consensus 163 ~ 163 (165)
T cd01868 163 E 163 (165)
T ss_pred H
Confidence 4
No 71
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=98.01 E-value=1.2e-05 Score=60.80 Aligned_cols=57 Identities=25% Similarity=0.269 Sum_probs=37.5
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHh-hcCCcEEEeecCCCCCHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEF-YSTLKVVGFSSVSGEGTEELLQLI 82 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~ef-y~~l~vv~VSA~TGeGideL~~~I 82 (150)
.+.|+|+|+||+|+..+... +.+.+.+.. .+. -...+++.+||++|.|+++++..+
T Consensus 114 ~~~p~iiv~nK~Dl~~~~~~-------~~~~~~~~~----------------~~~~~~~~~~~~~Sa~~g~gi~~l~~~l 170 (173)
T cd04154 114 AGATLLILANKQDLPGALSE-------EEIREALEL----------------DKISSHHWRIQPCSAVTGEGLLQGIDWL 170 (173)
T ss_pred cCCCEEEEEECcccccCCCH-------HHHHHHhCc----------------cccCCCceEEEeccCCCCcCHHHHHHHH
Confidence 46799999999998653211 111222210 000 124589999999999999999887
Q ss_pred H
Q psy7275 83 K 83 (150)
Q Consensus 83 ~ 83 (150)
.
T Consensus 171 ~ 171 (173)
T cd04154 171 V 171 (173)
T ss_pred h
Confidence 4
No 72
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=98.01 E-value=1.3e-05 Score=60.90 Aligned_cols=58 Identities=17% Similarity=0.216 Sum_probs=38.0
Q ss_pred CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHH
Q psy7275 5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKL 84 (150)
Q Consensus 5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e 84 (150)
++|+|+|.||+|+.+.... ...+.+.+... +....++.+||.+|.|+++++..+.+
T Consensus 108 ~~p~iiv~NK~Dl~~~~~~--~~~~~~~~~~~----------------------~~~~~~~~~Sa~~~~~v~~lf~~l~~ 163 (169)
T cd01892 108 EIPCLFVAAKADLDEQQQR--YEVQPDEFCRK----------------------LGLPPPLHFSSKLGDSSNELFTKLAT 163 (169)
T ss_pred CCeEEEEEEcccccccccc--cccCHHHHHHH----------------------cCCCCCEEEEeccCccHHHHHHHHHH
Confidence 6899999999998643211 11111111111 11124589999999999999999987
Q ss_pred HH
Q psy7275 85 AG 86 (150)
Q Consensus 85 ~~ 86 (150)
.+
T Consensus 164 ~~ 165 (169)
T cd01892 164 AA 165 (169)
T ss_pred Hh
Confidence 65
No 73
>PRK03003 GTP-binding protein Der; Reviewed
Probab=98.00 E-value=2.7e-05 Score=69.09 Aligned_cols=68 Identities=15% Similarity=0.227 Sum_probs=45.5
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK 83 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~ 83 (150)
.+.|+|+|+||+|+.+.+.. .. +...+.. . + .+....+++.+||++|.|+++++..|.
T Consensus 321 ~~~piIiV~NK~Dl~~~~~~-~~------~~~~i~~----------~----l-~~~~~~~~~~~SAk~g~gv~~lf~~i~ 378 (472)
T PRK03003 321 AGRALVLAFNKWDLVDEDRR-YY------LEREIDR----------E----L-AQVPWAPRVNISAKTGRAVDKLVPALE 378 (472)
T ss_pred cCCCEEEEEECcccCChhHH-HH------HHHHHHH----------h----c-ccCCCCCEEEEECCCCCCHHHHHHHHH
Confidence 56899999999999754321 00 1111110 0 0 011235889999999999999999999
Q ss_pred HHHHHHHhhh
Q psy7275 84 LAGEDYEKNY 93 (150)
Q Consensus 84 e~~~ey~~~y 93 (150)
+..+.+....
T Consensus 379 ~~~~~~~~~i 388 (472)
T PRK03003 379 TALESWDTRI 388 (472)
T ss_pred HHHHHhcccC
Confidence 8887776544
No 74
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.00 E-value=7.4e-05 Score=62.71 Aligned_cols=28 Identities=29% Similarity=0.289 Sum_probs=24.3
Q ss_pred CcEEEeecCCCCCHHHHHHHHHHHHHHH
Q psy7275 62 LKVVGFSSVSGEGTEELLQLIKLAGEDY 89 (150)
Q Consensus 62 l~vv~VSA~TGeGideL~~~I~e~~~ey 89 (150)
.++++|||++|+|+++|++.|.+.....
T Consensus 213 ~~v~~iSA~~g~Gi~~L~~~i~~~~~~~ 240 (300)
T TIGR00750 213 PPVLTTSAVEGRGIDELWDAIEEHKTFL 240 (300)
T ss_pred CCEEEEEccCCCCHHHHHHHHHHHHHHH
Confidence 3689999999999999999999876533
No 75
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=98.00 E-value=2e-05 Score=62.11 Aligned_cols=60 Identities=12% Similarity=0.014 Sum_probs=40.2
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK 83 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~ 83 (150)
.++|+|+|.||+|+...... +.+..+... .. ..+.+++.+||++|.|++++|..+.
T Consensus 115 ~~~piiivgNK~Dl~~~~~~-----~~~~~~~~~------------------~~-~~~~~~~e~Sak~g~~v~~lf~~i~ 170 (198)
T cd04142 115 KEPPIVVVGNKRDQQRHRFA-----PRHVLSVLV------------------RK-SWKCGYLECSAKYNWHILLLFKELL 170 (198)
T ss_pred CCCCEEEEEECccccccccc-----cHHHHHHHH------------------HH-hcCCcEEEecCCCCCCHHHHHHHHH
Confidence 56899999999999654321 111111100 00 0146899999999999999999988
Q ss_pred HHHH
Q psy7275 84 LAGE 87 (150)
Q Consensus 84 e~~~ 87 (150)
...-
T Consensus 171 ~~~~ 174 (198)
T cd04142 171 ISAT 174 (198)
T ss_pred HHhh
Confidence 7554
No 76
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=98.00 E-value=2.5e-05 Score=56.90 Aligned_cols=56 Identities=18% Similarity=0.131 Sum_probs=37.8
Q ss_pred CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHH
Q psy7275 5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKL 84 (150)
Q Consensus 5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e 84 (150)
++|+|+|+||+|+..+.... .+...+.. .. .+.+++.+||++|.|++++++.+..
T Consensus 105 ~~piiiv~nK~D~~~~~~~~-----~~~~~~~~------------------~~--~~~~~~~~s~~~~~gi~~~~~~l~~ 159 (162)
T cd04123 105 NISLVIVGNKIDLERQRVVS-----KSEAEEYA------------------KS--VGAKHFETSAKTGKGIEELFLSLAK 159 (162)
T ss_pred CCeEEEEEECcccccccCCC-----HHHHHHHH------------------HH--cCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 68999999999987533210 01011100 11 1457899999999999999999866
Q ss_pred H
Q psy7275 85 A 85 (150)
Q Consensus 85 ~ 85 (150)
.
T Consensus 160 ~ 160 (162)
T cd04123 160 R 160 (162)
T ss_pred H
Confidence 4
No 77
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=98.00 E-value=1.8e-05 Score=58.32 Aligned_cols=60 Identities=18% Similarity=0.186 Sum_probs=39.3
Q ss_pred CCCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHH
Q psy7275 3 DTGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLI 82 (150)
Q Consensus 3 k~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I 82 (150)
..++|+|+|+||+|+...... +.+...+.... ......+++.+||++|.|++++++.|
T Consensus 98 ~~~~piiiv~nK~D~~~~~~~-------~~~~~~~~~~~---------------~~~~~~~~~~~Sa~~~~gv~~~~~~l 155 (158)
T cd00878 98 LKGVPLLIFANKQDLPGALSV-------SELIEKLGLEK---------------ILGRRWHIQPCSAVTGDGLDEGLDWL 155 (158)
T ss_pred cCCCcEEEEeeccCCccccCH-------HHHHHhhChhh---------------ccCCcEEEEEeeCCCCCCHHHHHHHH
Confidence 357899999999998754321 11111111000 01234589999999999999999987
Q ss_pred HH
Q psy7275 83 KL 84 (150)
Q Consensus 83 ~e 84 (150)
..
T Consensus 156 ~~ 157 (158)
T cd00878 156 LQ 157 (158)
T ss_pred hh
Confidence 53
No 78
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=98.00 E-value=2.9e-05 Score=58.06 Aligned_cols=26 Identities=19% Similarity=0.321 Sum_probs=22.6
Q ss_pred CCcEEEeecCCCCCHHHHHHHHHHHH
Q psy7275 61 TLKVVGFSSVSGEGTEELLQLIKLAG 86 (150)
Q Consensus 61 ~l~vv~VSA~TGeGideL~~~I~e~~ 86 (150)
..+++.+||++|.|+++++..|.+.+
T Consensus 149 ~~~~~~~Sa~~~~~v~~lf~~l~~~~ 174 (175)
T cd01870 149 AFGYMECSAKTKEGVREVFEMATRAA 174 (175)
T ss_pred CcEEEEeccccCcCHHHHHHHHHHHh
Confidence 45899999999999999999987653
No 79
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=97.99 E-value=2.6e-05 Score=66.97 Aligned_cols=59 Identities=25% Similarity=0.253 Sum_probs=40.4
Q ss_pred CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHH
Q psy7275 5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKL 84 (150)
Q Consensus 5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e 84 (150)
+.|+|+|+||+|+.+.....+ +.+.. .... ...+++++||++|+|+++|++.|.+
T Consensus 271 ~kp~IIV~NKiDL~~~~~~~~---------~~~~~--------------~~~~--~~~~i~~iSAktg~GI~eL~~~L~~ 325 (335)
T PRK12299 271 DKPRILVLNKIDLLDEEEERE---------KRAAL--------------ELAA--LGGPVFLISAVTGEGLDELLRALWE 325 (335)
T ss_pred cCCeEEEEECcccCCchhHHH---------HHHHH--------------HHHh--cCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 579999999999875432110 00000 0011 1368999999999999999999988
Q ss_pred HHHH
Q psy7275 85 AGED 88 (150)
Q Consensus 85 ~~~e 88 (150)
.+.+
T Consensus 326 ~l~~ 329 (335)
T PRK12299 326 LLEE 329 (335)
T ss_pred HHHh
Confidence 7654
No 80
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=97.99 E-value=3.2e-05 Score=57.83 Aligned_cols=57 Identities=9% Similarity=0.031 Sum_probs=38.4
Q ss_pred CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHH
Q psy7275 5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKL 84 (150)
Q Consensus 5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e 84 (150)
..|+|+|.||+|+.+.... ..+ +... +. .. .+.+++.+||++|.|++++++.+..
T Consensus 106 ~~piivv~nK~Dl~~~~~~-----~~~---~~~~--------~~-------~~--~~~~~~~~Sa~~~~gv~~l~~~l~~ 160 (165)
T cd01865 106 NAQVILVGNKCDMEDERVV-----SSE---RGRQ--------LA-------DQ--LGFEFFEASAKENINVKQVFERLVD 160 (165)
T ss_pred CCCEEEEEECcccCccccc-----CHH---HHHH--------HH-------HH--cCCEEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999654321 000 0000 00 01 1357999999999999999999987
Q ss_pred HH
Q psy7275 85 AG 86 (150)
Q Consensus 85 ~~ 86 (150)
.+
T Consensus 161 ~~ 162 (165)
T cd01865 161 II 162 (165)
T ss_pred HH
Confidence 64
No 81
>PRK12288 GTPase RsgA; Reviewed
Probab=97.99 E-value=1.7e-05 Score=68.48 Aligned_cols=54 Identities=24% Similarity=0.259 Sum_probs=38.3
Q ss_pred CCCCEEEeeecCCCCCchhh---HHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYA---IEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQ 80 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~---~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~ 80 (150)
.++|.|+|+||+|+.+.... .+|+..+ .. .+.+++.|||.+|+|+++|++
T Consensus 149 ~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y-------------------------~~--~g~~v~~vSA~tg~GideL~~ 201 (347)
T PRK12288 149 LGIEPLIVLNKIDLLDDEGRAFVNEQLDIY-------------------------RN--IGYRVLMVSSHTGEGLEELEA 201 (347)
T ss_pred cCCCEEEEEECccCCCcHHHHHHHHHHHHH-------------------------Hh--CCCeEEEEeCCCCcCHHHHHH
Confidence 46899999999999765421 1222110 01 135899999999999999998
Q ss_pred HHHH
Q psy7275 81 LIKL 84 (150)
Q Consensus 81 ~I~e 84 (150)
.|..
T Consensus 202 ~L~~ 205 (347)
T PRK12288 202 ALTG 205 (347)
T ss_pred HHhh
Confidence 8864
No 82
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=97.99 E-value=1.8e-05 Score=57.46 Aligned_cols=54 Identities=17% Similarity=0.177 Sum_probs=38.0
Q ss_pred CCCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHH
Q psy7275 3 DTGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLI 82 (150)
Q Consensus 3 k~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I 82 (150)
+.+.|+|+|+||+|+.+.... . ..+ .+. ...+++.+||++|.|++++++.+
T Consensus 103 ~~~~piiiv~nK~D~~~~~~~---~-------~~~------------------~~~-~~~~~~~~Sa~~~~gv~~l~~~l 153 (157)
T cd01894 103 KSKKPVILVVNKVDNIKEEDE---A-------AEF------------------YSL-GFGEPIPISAEHGRGIGDLLDAI 153 (157)
T ss_pred hcCCCEEEEEECcccCChHHH---H-------HHH------------------Hhc-CCCCeEEEecccCCCHHHHHHHH
Confidence 346899999999999765431 0 000 011 11278999999999999999998
Q ss_pred HHH
Q psy7275 83 KLA 85 (150)
Q Consensus 83 ~e~ 85 (150)
.+.
T Consensus 154 ~~~ 156 (157)
T cd01894 154 LEL 156 (157)
T ss_pred Hhh
Confidence 753
No 83
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=97.99 E-value=4.8e-06 Score=61.37 Aligned_cols=58 Identities=24% Similarity=0.308 Sum_probs=37.2
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhh--cCCcEEEeecCCCCCHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFY--STLKVVGFSSVSGEGTEELLQL 81 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy--~~l~vv~VSA~TGeGideL~~~ 81 (150)
.+.|+|+|+||+|+...... +.+...+. +.++. ...+++.+||++|+|++++++.
T Consensus 100 ~~~piilv~nK~Dl~~~~~~-------~~i~~~~~----------------~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~ 156 (160)
T cd04156 100 KGVPVVLLANKQDLPGALTA-------EEITRRFK----------------LKKYCSDRDWYVQPCSAVTGEGLAEAFRK 156 (160)
T ss_pred cCCCEEEEEECcccccCcCH-------HHHHHHcC----------------CcccCCCCcEEEEecccccCCChHHHHHH
Confidence 46899999999998543211 11111111 00111 2347889999999999999998
Q ss_pred HHH
Q psy7275 82 IKL 84 (150)
Q Consensus 82 I~e 84 (150)
|.+
T Consensus 157 i~~ 159 (160)
T cd04156 157 LAS 159 (160)
T ss_pred Hhc
Confidence 853
No 84
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=97.99 E-value=2.4e-05 Score=60.40 Aligned_cols=27 Identities=15% Similarity=0.128 Sum_probs=23.3
Q ss_pred CCcEEEeecCCCCCHHHHHHHHHHHHH
Q psy7275 61 TLKVVGFSSVSGEGTEELLQLIKLAGE 87 (150)
Q Consensus 61 ~l~vv~VSA~TGeGideL~~~I~e~~~ 87 (150)
..+++.+||++|.|++++|..+.+.+.
T Consensus 148 ~~~~~e~SAk~~~~v~e~f~~l~~~~~ 174 (189)
T cd04134 148 ALRYLECSAKLNRGVNEAFTEAARVAL 174 (189)
T ss_pred CCEEEEccCCcCCCHHHHHHHHHHHHh
Confidence 367899999999999999999887653
No 85
>PTZ00099 rab6; Provisional
Probab=97.98 E-value=2.8e-05 Score=60.34 Aligned_cols=57 Identities=14% Similarity=0.135 Sum_probs=37.4
Q ss_pred CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHH
Q psy7275 5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKL 84 (150)
Q Consensus 5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e 84 (150)
.+|+|+|.||+|+...... +.+ ++.. + ..++ +..++.+||++|+|++++|..|.+
T Consensus 85 ~~piilVgNK~DL~~~~~v-----~~~---e~~~--------~-------~~~~--~~~~~e~SAk~g~nV~~lf~~l~~ 139 (176)
T PTZ00099 85 DVIIALVGNKTDLGDLRKV-----TYE---EGMQ--------K-------AQEY--NTMFHETSAKAGHNIKVLFKKIAA 139 (176)
T ss_pred CCeEEEEEECcccccccCC-----CHH---HHHH--------H-------HHHc--CCEEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999998643211 000 1111 0 0111 356789999999999999998876
Q ss_pred HH
Q psy7275 85 AG 86 (150)
Q Consensus 85 ~~ 86 (150)
.+
T Consensus 140 ~l 141 (176)
T PTZ00099 140 KL 141 (176)
T ss_pred HH
Confidence 54
No 86
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=97.98 E-value=2.6e-05 Score=58.85 Aligned_cols=59 Identities=15% Similarity=0.120 Sum_probs=39.1
Q ss_pred CCCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHH
Q psy7275 3 DTGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLI 82 (150)
Q Consensus 3 k~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I 82 (150)
..++|+|+|.||+|+...... +.+... .+ ..++ ..+++++||++|.|+++++..+
T Consensus 104 ~~~~p~ilv~NK~Dl~~~~~~-----~~~~~~-~~-----------------~~~~--~~~~~~~Sa~~~~gv~~l~~~l 158 (180)
T cd04137 104 KESVPIVLVGNKSDLHTQRQV-----STEEGK-EL-----------------AESW--GAAFLESSARENENVEEAFELL 158 (180)
T ss_pred CCCCCEEEEEEchhhhhcCcc-----CHHHHH-HH-----------------HHHc--CCeEEEEeCCCCCCHHHHHHHH
Confidence 357899999999998643221 000000 00 0111 3578999999999999999999
Q ss_pred HHHH
Q psy7275 83 KLAG 86 (150)
Q Consensus 83 ~e~~ 86 (150)
.+.+
T Consensus 159 ~~~~ 162 (180)
T cd04137 159 IEEI 162 (180)
T ss_pred HHHH
Confidence 7654
No 87
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=97.98 E-value=1.8e-05 Score=62.64 Aligned_cols=58 Identities=16% Similarity=0.177 Sum_probs=39.6
Q ss_pred CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHH
Q psy7275 5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKL 84 (150)
Q Consensus 5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e 84 (150)
+.|.|+|+||+|+.+.... +.+.+.+.+ .+.++..+++.+||++|+|++++++.+.+
T Consensus 148 ~~a~iiv~NK~Dl~~~~~~-----~~~~~~~~l------------------~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~ 204 (207)
T TIGR00073 148 KEADLIVINKADLAEAVGF-----DVEKMKADA------------------KKINPEAEIILMSLKTGEGLDEWLEFLEG 204 (207)
T ss_pred hhCCEEEEEHHHccccchh-----hHHHHHHHH------------------HHhCCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 3488999999999754221 011111111 12345579999999999999999999876
Q ss_pred H
Q psy7275 85 A 85 (150)
Q Consensus 85 ~ 85 (150)
.
T Consensus 205 ~ 205 (207)
T TIGR00073 205 Q 205 (207)
T ss_pred h
Confidence 4
No 88
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=97.98 E-value=2.2e-05 Score=65.12 Aligned_cols=56 Identities=18% Similarity=0.377 Sum_probs=41.1
Q ss_pred CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHH
Q psy7275 5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKL 84 (150)
Q Consensus 5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e 84 (150)
+.|+|+|+||+|+.+.....+|.+.++ + ...+++.|||.+|.|+++|.+.+.+
T Consensus 48 ~kp~IiVlNK~DL~~~~~~~~~~~~~~-------------------------~--~~~~vi~iSa~~~~gi~~L~~~i~~ 100 (276)
T TIGR03596 48 NKPRLIVLNKADLADPAVTKQWLKYFE-------------------------E--KGIKALAINAKKGKGVKKIIKAAKK 100 (276)
T ss_pred CCCEEEEEEccccCCHHHHHHHHHHHH-------------------------H--cCCeEEEEECCCcccHHHHHHHHHH
Confidence 579999999999976544445552211 0 1247899999999999999998877
Q ss_pred HHH
Q psy7275 85 AGE 87 (150)
Q Consensus 85 ~~~ 87 (150)
.+.
T Consensus 101 ~~~ 103 (276)
T TIGR03596 101 LLK 103 (276)
T ss_pred HHH
Confidence 653
No 89
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=97.98 E-value=6.1e-05 Score=64.90 Aligned_cols=26 Identities=31% Similarity=0.401 Sum_probs=24.2
Q ss_pred CcEEEeecCCCCCHHHHHHHHHHHHH
Q psy7275 62 LKVVGFSSVSGEGTEELLQLIKLAGE 87 (150)
Q Consensus 62 l~vv~VSA~TGeGideL~~~I~e~~~ 87 (150)
.+++.|||++|.|+++|.+.|.+...
T Consensus 235 ~pVi~vSA~~g~GIdeL~~~I~~~~~ 260 (332)
T PRK09435 235 PPVLTCSALEGEGIDEIWQAIEDHRA 260 (332)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 58999999999999999999999875
No 90
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=97.98 E-value=2.2e-05 Score=71.85 Aligned_cols=63 Identities=24% Similarity=0.309 Sum_probs=40.6
Q ss_pred CCCC-EEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHH--hhcCCcEEEeecCCCCCHHHHHH
Q psy7275 4 TGFP-YTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDE--FYSTLKVVGFSSVSGEGTEELLQ 80 (150)
Q Consensus 4 ~~lP-~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~e--fy~~l~vv~VSA~TGeGideL~~ 80 (150)
.++| +|+|+||+|+.+.+.. ... .+.+. . .+.. |..+.++++|||++|+|+++++.
T Consensus 101 lgi~~iIVVlNK~Dlv~~~~~----~~~---~~ei~-------~-------~l~~~~~~~~~~ii~vSA~tG~GI~eL~~ 159 (581)
T TIGR00475 101 LGIPHTIVVITKADRVNEEEI----KRT---EMFMK-------Q-------ILNSYIFLKNAKIFKTSAKTGQGIGELKK 159 (581)
T ss_pred cCCCeEEEEEECCCCCCHHHH----HHH---HHHHH-------H-------HHHHhCCCCCCcEEEEeCCCCCCchhHHH
Confidence 4678 9999999999764421 111 11111 0 0111 11257999999999999999998
Q ss_pred HHHHHHH
Q psy7275 81 LIKLAGE 87 (150)
Q Consensus 81 ~I~e~~~ 87 (150)
.+....+
T Consensus 160 ~L~~l~~ 166 (581)
T TIGR00475 160 ELKNLLE 166 (581)
T ss_pred HHHHHHH
Confidence 7765543
No 91
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=97.98 E-value=2.2e-05 Score=58.68 Aligned_cols=25 Identities=20% Similarity=0.137 Sum_probs=21.8
Q ss_pred CcEEEeecCCCCCHHHHHHHHHHHH
Q psy7275 62 LKVVGFSSVSGEGTEELLQLIKLAG 86 (150)
Q Consensus 62 l~vv~VSA~TGeGideL~~~I~e~~ 86 (150)
.+++.+||++|.|++++++.+.+.+
T Consensus 149 ~~~~e~Sa~~~~gi~~~f~~~~~~~ 173 (174)
T cd04135 149 HCYVECSALTQKGLKTVFDEAILAI 173 (174)
T ss_pred CEEEEecCCcCCCHHHHHHHHHHHh
Confidence 4789999999999999999987653
No 92
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=97.98 E-value=3e-05 Score=56.86 Aligned_cols=58 Identities=12% Similarity=0.056 Sum_probs=39.7
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK 83 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~ 83 (150)
.++|+++|+||+|+...... +.+.... + ... .+.+++.+||.+|.|++++++.|.
T Consensus 104 ~~~pivvv~nK~D~~~~~~~-----~~~~~~~-----------~-------~~~--~~~~~~e~Sa~~~~~i~~l~~~i~ 158 (164)
T smart00175 104 PNVVIMLVGNKSDLEDQRQV-----SREEAEA-----------F-------AEE--HGLPFFETSAKTNTNVEEAFEELA 158 (164)
T ss_pred CCCeEEEEEEchhcccccCC-----CHHHHHH-----------H-------HHH--cCCeEEEEeCCCCCCHHHHHHHHH
Confidence 46899999999998653221 1110000 0 011 246799999999999999999998
Q ss_pred HHH
Q psy7275 84 LAG 86 (150)
Q Consensus 84 e~~ 86 (150)
+.+
T Consensus 159 ~~~ 161 (164)
T smart00175 159 REI 161 (164)
T ss_pred HHH
Confidence 765
No 93
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=97.97 E-value=2.6e-05 Score=59.50 Aligned_cols=62 Identities=21% Similarity=0.170 Sum_probs=41.9
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK 83 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~ 83 (150)
.++|+++|+||+|+.+........ +.+. ..+... ..+++++||++|+|++++++.|.
T Consensus 134 ~~~~~iiv~nK~Dl~~~~~~~~~~-------~~i~--------------~~l~~~--~~~~~~~Sa~~~~gi~~l~~~i~ 190 (196)
T PRK00454 134 YGIPVLIVLTKADKLKKGERKKQL-------KKVR--------------KALKFG--DDEVILFSSLKKQGIDELRAAIA 190 (196)
T ss_pred cCCcEEEEEECcccCCHHHHHHHH-------HHHH--------------HHHHhc--CCceEEEEcCCCCCHHHHHHHHH
Confidence 468999999999987653321111 1111 011111 46899999999999999999998
Q ss_pred HHHHH
Q psy7275 84 LAGED 88 (150)
Q Consensus 84 e~~~e 88 (150)
..+.|
T Consensus 191 ~~~~~ 195 (196)
T PRK00454 191 KWLAE 195 (196)
T ss_pred HHhcC
Confidence 77653
No 94
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=97.97 E-value=1.6e-05 Score=61.22 Aligned_cols=25 Identities=24% Similarity=0.442 Sum_probs=22.1
Q ss_pred CcEEEeecCCCCCHHHHHHHHHHHH
Q psy7275 62 LKVVGFSSVSGEGTEELLQLIKLAG 86 (150)
Q Consensus 62 l~vv~VSA~TGeGideL~~~I~e~~ 86 (150)
.+++.+||++|.|++++++.+.+.+
T Consensus 148 ~~~~e~Sa~~~~~v~~~f~~l~~~~ 172 (187)
T cd04129 148 KKYMECSALTGEGVDDVFEAATRAA 172 (187)
T ss_pred cEEEEccCCCCCCHHHHHHHHHHHH
Confidence 4789999999999999999998654
No 95
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=97.97 E-value=1.8e-05 Score=56.06 Aligned_cols=53 Identities=11% Similarity=0.229 Sum_probs=37.0
Q ss_pred CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275 5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK 83 (150)
Q Consensus 5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~ 83 (150)
+.|+|+|+||+|+..+..... ....+ .. ....+++++||.+|.|++++++.|.
T Consensus 108 ~~p~ivv~nK~D~~~~~~~~~-------~~~~~------------------~~-~~~~~~~~~sa~~~~gv~~~~~~l~ 160 (161)
T TIGR00231 108 NVPIILVGNKIDLRDAKLKTH-------VAFLF------------------AK-LNGEPIIPLSAETGKNIDSAFKIVE 160 (161)
T ss_pred CCcEEEEEEcccCCcchhhHH-------HHHHH------------------hh-ccCCceEEeecCCCCCHHHHHHHhh
Confidence 789999999999976542110 00111 11 2345799999999999999998874
No 96
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=97.97 E-value=8.4e-06 Score=61.25 Aligned_cols=23 Identities=22% Similarity=0.229 Sum_probs=19.7
Q ss_pred CcEEEeecCCCCCHHHHHHHHHH
Q psy7275 62 LKVVGFSSVSGEGTEELLQLIKL 84 (150)
Q Consensus 62 l~vv~VSA~TGeGideL~~~I~e 84 (150)
..++.+||+||.|++++++.|.+
T Consensus 136 ~~~~~~Sak~g~gv~~~~~~l~~ 158 (159)
T cd04150 136 WYIQATCATSGDGLYEGLDWLSN 158 (159)
T ss_pred EEEEEeeCCCCCCHHHHHHHHhc
Confidence 46779999999999999988753
No 97
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=97.96 E-value=1.1e-05 Score=60.21 Aligned_cols=58 Identities=26% Similarity=0.327 Sum_probs=37.7
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHh-hcCCcEEEeecCCCCCHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEF-YSTLKVVGFSSVSGEGTEELLQLI 82 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~ef-y~~l~vv~VSA~TGeGideL~~~I 82 (150)
.++|+++|+||+|+.++....+ +.+.+. +..+ ....+++.+||++|+|++++++.|
T Consensus 114 ~~~p~ivv~nK~D~~~~~~~~~-------i~~~l~----------------~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l 170 (173)
T cd04155 114 AGVPVLVFANKQDLATAAPAEE-------IAEALN----------------LHDLRDRTWHIQACSAKTGEGLQEGMNWV 170 (173)
T ss_pred cCCCEEEEEECCCCccCCCHHH-------HHHHcC----------------CcccCCCeEEEEEeECCCCCCHHHHHHHH
Confidence 4689999999999866433211 112111 0011 112367899999999999999987
Q ss_pred HH
Q psy7275 83 KL 84 (150)
Q Consensus 83 ~e 84 (150)
.+
T Consensus 171 ~~ 172 (173)
T cd04155 171 CK 172 (173)
T ss_pred hc
Confidence 53
No 98
>PLN00223 ADP-ribosylation factor; Provisional
Probab=97.96 E-value=2.7e-05 Score=60.21 Aligned_cols=59 Identities=19% Similarity=0.107 Sum_probs=37.6
Q ss_pred CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhh-cCCcEEEeecCCCCCHHHHHHHHH
Q psy7275 5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFY-STLKVVGFSSVSGEGTEELLQLIK 83 (150)
Q Consensus 5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy-~~l~vv~VSA~TGeGideL~~~I~ 83 (150)
+.|+|+|.||+|+.+.... +.+.+.+. +..+- ....++.+||+||+|++++++.|.
T Consensus 118 ~~piilv~NK~Dl~~~~~~-------~~~~~~l~----------------l~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~ 174 (181)
T PLN00223 118 DAVLLVFANKQDLPNAMNA-------AEITDKLG----------------LHSLRQRHWYIQSTCATSGEGLYEGLDWLS 174 (181)
T ss_pred CCCEEEEEECCCCCCCCCH-------HHHHHHhC----------------ccccCCCceEEEeccCCCCCCHHHHHHHHH
Confidence 6799999999998653221 11222221 11110 112466899999999999999987
Q ss_pred HHH
Q psy7275 84 LAG 86 (150)
Q Consensus 84 e~~ 86 (150)
+.+
T Consensus 175 ~~~ 177 (181)
T PLN00223 175 NNI 177 (181)
T ss_pred HHH
Confidence 654
No 99
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=97.96 E-value=1.6e-05 Score=59.48 Aligned_cols=25 Identities=24% Similarity=0.327 Sum_probs=22.1
Q ss_pred CcEEEeecCCCCCHHHHHHHHHHHH
Q psy7275 62 LKVVGFSSVSGEGTEELLQLIKLAG 86 (150)
Q Consensus 62 l~vv~VSA~TGeGideL~~~I~e~~ 86 (150)
.+++.+||++|.|+++++..+.+.+
T Consensus 147 ~~~~e~Sa~~~~~v~~lf~~l~~~~ 171 (174)
T smart00174 147 VKYLECSALTQEGVREVFEEAIRAA 171 (174)
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHh
Confidence 4789999999999999999987654
No 100
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=97.95 E-value=2.7e-05 Score=58.38 Aligned_cols=58 Identities=12% Similarity=0.011 Sum_probs=39.2
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK 83 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~ 83 (150)
.++|+|+|.||+|+.+.... +.++. ... ... ...+++.+||++|.|+++++..+.
T Consensus 107 ~~~p~iiv~nK~Dl~~~~~~--~~~~~---~~~------------------~~~--~~~~~~~~Sa~~~~~v~~~~~~i~ 161 (167)
T cd01867 107 EDVERMLVGNKCDMEEKRVV--SKEEG---EAL------------------ADE--YGIKFLETSAKANINVEEAFFTLA 161 (167)
T ss_pred CCCcEEEEEECcccccccCC--CHHHH---HHH------------------HHH--cCCEEEEEeCCCCCCHHHHHHHHH
Confidence 46899999999999753221 11111 110 011 135889999999999999999988
Q ss_pred HHH
Q psy7275 84 LAG 86 (150)
Q Consensus 84 e~~ 86 (150)
+.+
T Consensus 162 ~~~ 164 (167)
T cd01867 162 KDI 164 (167)
T ss_pred HHH
Confidence 765
No 101
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=97.95 E-value=2.7e-05 Score=59.27 Aligned_cols=27 Identities=19% Similarity=0.198 Sum_probs=24.0
Q ss_pred CcEEEeecCCCCCHHHHHHHHHHHHHH
Q psy7275 62 LKVVGFSSVSGEGTEELLQLIKLAGED 88 (150)
Q Consensus 62 l~vv~VSA~TGeGideL~~~I~e~~~e 88 (150)
.+++.+||++|.|++++++.+...+.+
T Consensus 140 ~~~~e~Sa~~g~~v~~lf~~l~~~~~~ 166 (170)
T cd04108 140 AEYWSVSALSGENVREFFFRVAALTFE 166 (170)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 578899999999999999999887754
No 102
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=97.95 E-value=3.2e-05 Score=61.08 Aligned_cols=28 Identities=14% Similarity=0.101 Sum_probs=23.9
Q ss_pred CCcEEEeecCCCCCHHHHHHHHHHHHHH
Q psy7275 61 TLKVVGFSSVSGEGTEELLQLIKLAGED 88 (150)
Q Consensus 61 ~l~vv~VSA~TGeGideL~~~I~e~~~e 88 (150)
+.+++.+||++|+|++++++.|.+.+..
T Consensus 140 ~~~~~~iSAktg~gv~~lf~~l~~~l~~ 167 (215)
T cd04109 140 GMESCLVSAKTGDRVNLLFQQLAAELLG 167 (215)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3678999999999999999999876543
No 103
>COG2262 HflX GTPases [General function prediction only]
Probab=97.95 E-value=1.6e-05 Score=70.30 Aligned_cols=55 Identities=24% Similarity=0.227 Sum_probs=40.5
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK 83 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~ 83 (150)
..+|+|+|+||+|.+...... ..+. . +.+ ..|+|||++|+|++.|++.|.
T Consensus 303 ~~~p~i~v~NKiD~~~~~~~~----------~~~~------------------~-~~~-~~v~iSA~~~~gl~~L~~~i~ 352 (411)
T COG2262 303 DEIPIILVLNKIDLLEDEEIL----------AELE------------------R-GSP-NPVFISAKTGEGLDLLRERII 352 (411)
T ss_pred CCCCEEEEEecccccCchhhh----------hhhh------------------h-cCC-CeEEEEeccCcCHHHHHHHHH
Confidence 357999999999987654310 1111 0 112 699999999999999999999
Q ss_pred HHHHH
Q psy7275 84 LAGED 88 (150)
Q Consensus 84 e~~~e 88 (150)
+.+..
T Consensus 353 ~~l~~ 357 (411)
T COG2262 353 ELLSG 357 (411)
T ss_pred HHhhh
Confidence 98863
No 104
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=97.94 E-value=2.1e-05 Score=60.12 Aligned_cols=60 Identities=15% Similarity=0.001 Sum_probs=37.7
Q ss_pred CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHH
Q psy7275 5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKL 84 (150)
Q Consensus 5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e 84 (150)
+.|+++|.||+|+.+.... +.+.+.+.-. ........++++||++|+|+++++..|.+
T Consensus 114 ~~piilv~NK~Dl~~~~~~-------~~i~~~~~~~---------------~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~ 171 (175)
T smart00177 114 DAVILVFANKQDLPDAMKA-------AEITEKLGLH---------------SIRDRNWYIQPTCATSGDGLYEGLTWLSN 171 (175)
T ss_pred CCcEEEEEeCcCcccCCCH-------HHHHHHhCcc---------------ccCCCcEEEEEeeCCCCCCHHHHHHHHHH
Confidence 5799999999998643211 1111221100 00011245778999999999999999876
Q ss_pred HH
Q psy7275 85 AG 86 (150)
Q Consensus 85 ~~ 86 (150)
..
T Consensus 172 ~~ 173 (175)
T smart00177 172 NL 173 (175)
T ss_pred Hh
Confidence 54
No 105
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=97.94 E-value=3.8e-05 Score=71.56 Aligned_cols=68 Identities=13% Similarity=0.161 Sum_probs=46.1
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK 83 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~ 83 (150)
.+.|+|+|+||+|+.+.+.. ++ +...+.. .+ .+....+++++||++|.|+++|++.+.
T Consensus 560 ~~~piIiV~NK~DL~~~~~~-~~------~~~~~~~--------------~l-~~~~~~~ii~iSAktg~gv~~L~~~i~ 617 (712)
T PRK09518 560 AGRALVLVFNKWDLMDEFRR-QR------LERLWKT--------------EF-DRVTWARRVNLSAKTGWHTNRLAPAMQ 617 (712)
T ss_pred cCCCEEEEEEchhcCChhHH-HH------HHHHHHH--------------hc-cCCCCCCEEEEECCCCCCHHHHHHHHH
Confidence 46899999999999764321 11 1111110 00 122345889999999999999999999
Q ss_pred HHHHHHHhhh
Q psy7275 84 LAGEDYEKNY 93 (150)
Q Consensus 84 e~~~ey~~~y 93 (150)
+...++....
T Consensus 618 ~~~~~~~~~i 627 (712)
T PRK09518 618 EALESWDQRI 627 (712)
T ss_pred HHHHHhcccC
Confidence 9887776544
No 106
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=97.94 E-value=3.1e-05 Score=59.34 Aligned_cols=25 Identities=24% Similarity=0.347 Sum_probs=22.3
Q ss_pred CCcEEEeecCCCCCHHHHHHHHHHH
Q psy7275 61 TLKVVGFSSVSGEGTEELLQLIKLA 85 (150)
Q Consensus 61 ~l~vv~VSA~TGeGideL~~~I~e~ 85 (150)
...++.+||+||+|++++++.+..+
T Consensus 149 ~~~~~e~SA~tg~~v~~~f~~~~~~ 173 (175)
T cd01874 149 AVKYVECSALTQKGLKNVFDEAILA 173 (175)
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHH
Confidence 3689999999999999999998764
No 107
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=97.93 E-value=2.4e-05 Score=57.91 Aligned_cols=57 Identities=18% Similarity=0.117 Sum_probs=37.5
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK 83 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~ 83 (150)
.++|+|+|.||+|+....... .+ +... + ...+ +.+++++||++|.|+++++..+.
T Consensus 105 ~~~piviv~nK~Dl~~~~~~~-----~~---~~~~--------~-------~~~~--~~~~~~~Sa~~~~~v~~l~~~l~ 159 (163)
T cd04176 105 EKVPIILVGNKVDLESEREVS-----SA---EGRA--------L-------AEEW--GCPFMETSAKSKTMVNELFAEIV 159 (163)
T ss_pred CCCCEEEEEECccchhcCccC-----HH---HHHH--------H-------HHHh--CCEEEEecCCCCCCHHHHHHHHH
Confidence 468999999999986432110 00 0000 0 0111 35889999999999999998886
Q ss_pred HH
Q psy7275 84 LA 85 (150)
Q Consensus 84 e~ 85 (150)
+.
T Consensus 160 ~~ 161 (163)
T cd04176 160 RQ 161 (163)
T ss_pred Hh
Confidence 53
No 108
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=97.93 E-value=3.3e-05 Score=57.31 Aligned_cols=56 Identities=11% Similarity=0.116 Sum_probs=38.1
Q ss_pred CCCCEEEeeecCCCCCchhh-HHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYA-IEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLI 82 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~-~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I 82 (150)
.++|.|+|.||+|+.+.... .+..+++ .+- ....++.+||++|.|+++++..|
T Consensus 111 ~~~~~i~v~NK~D~~~~~~i~~~~~~~~-------------------------~~~-~~~~~~~~Sa~~~~gv~~l~~~i 164 (169)
T cd04114 111 NKVITILVGNKIDLAERREVSQQRAEEF-------------------------SDA-QDMYYLETSAKESDNVEKLFLDL 164 (169)
T ss_pred CCCeEEEEEECcccccccccCHHHHHHH-------------------------HHH-cCCeEEEeeCCCCCCHHHHHHHH
Confidence 46899999999998643321 1111100 011 13578999999999999999998
Q ss_pred HHH
Q psy7275 83 KLA 85 (150)
Q Consensus 83 ~e~ 85 (150)
...
T Consensus 165 ~~~ 167 (169)
T cd04114 165 ACR 167 (169)
T ss_pred HHH
Confidence 753
No 109
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=97.92 E-value=2.9e-05 Score=58.60 Aligned_cols=27 Identities=22% Similarity=0.137 Sum_probs=22.5
Q ss_pred CcEEEeecCCCCCHHHHHHHHHHHHHH
Q psy7275 62 LKVVGFSSVSGEGTEELLQLIKLAGED 88 (150)
Q Consensus 62 l~vv~VSA~TGeGideL~~~I~e~~~e 88 (150)
+.++.+||++|.|+++++..|.+...+
T Consensus 136 ~~~~~~Sa~~g~gv~~~f~~l~~~~~~ 162 (169)
T cd04158 136 WYIQGCDARSGMGLYEGLDWLSRQLVA 162 (169)
T ss_pred EEEEeCcCCCCCCHHHHHHHHHHHHhh
Confidence 467889999999999999998765543
No 110
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=97.92 E-value=3.9e-05 Score=55.61 Aligned_cols=61 Identities=23% Similarity=0.379 Sum_probs=41.4
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK 83 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~ 83 (150)
.+.|+++|+||+|+.+........... .. .+..++...+++++||++|.|++++++.|.
T Consensus 109 ~~~~vi~v~nK~D~~~~~~~~~~~~~~---~~------------------~l~~~~~~~~~~~~Sa~~~~~~~~l~~~l~ 167 (170)
T cd01876 109 LGIPFLVVLTKADKLKKSELAKALKEI---KK------------------ELKLFEIDPPIILFSSLKGQGIDELRALIE 167 (170)
T ss_pred cCCCEEEEEEchhcCChHHHHHHHHHH---HH------------------HHHhccCCCceEEEecCCCCCHHHHHHHHH
Confidence 357999999999987654322211111 01 111134557899999999999999999987
Q ss_pred HH
Q psy7275 84 LA 85 (150)
Q Consensus 84 e~ 85 (150)
+.
T Consensus 168 ~~ 169 (170)
T cd01876 168 KW 169 (170)
T ss_pred Hh
Confidence 64
No 111
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=97.91 E-value=3.6e-05 Score=58.15 Aligned_cols=55 Identities=15% Similarity=0.110 Sum_probs=38.8
Q ss_pred CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHH
Q psy7275 5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKL 84 (150)
Q Consensus 5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e 84 (150)
++|+|+|.||+|+..+... . +... +.+ ....+++.+||++|.|++++++.|.+
T Consensus 104 ~~piiiv~nK~Dl~~~~~~-~---------~~~~----------------~~~-~~~~~~~e~Sa~~~~~v~~~f~~l~~ 156 (166)
T cd00877 104 NIPIVLCGNKVDIKDRKVK-A---------KQIT----------------FHR-KKNLQYYEISAKSNYNFEKPFLWLAR 156 (166)
T ss_pred CCcEEEEEEchhcccccCC-H---------HHHH----------------HHH-HcCCEEEEEeCCCCCChHHHHHHHHH
Confidence 6899999999998633210 0 0000 001 13568999999999999999999986
Q ss_pred HH
Q psy7275 85 AG 86 (150)
Q Consensus 85 ~~ 86 (150)
.+
T Consensus 157 ~~ 158 (166)
T cd00877 157 KL 158 (166)
T ss_pred HH
Confidence 65
No 112
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=97.91 E-value=2.8e-05 Score=71.74 Aligned_cols=26 Identities=15% Similarity=0.185 Sum_probs=22.7
Q ss_pred CCcEEEeecCCCCCHHHHHHHHHHHH
Q psy7275 61 TLKVVGFSSVSGEGTEELLQLIKLAG 86 (150)
Q Consensus 61 ~l~vv~VSA~TGeGideL~~~I~e~~ 86 (150)
..++++|||++|+|+++|++.|....
T Consensus 140 ~~~ii~VSA~tG~gI~~L~~~L~~~~ 165 (614)
T PRK10512 140 EAKLFVTAATEGRGIDALREHLLQLP 165 (614)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhh
Confidence 46899999999999999999887644
No 113
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=97.90 E-value=4.2e-05 Score=58.32 Aligned_cols=58 Identities=16% Similarity=0.152 Sum_probs=38.7
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK 83 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~ 83 (150)
.++|+|+|.||+|+...... +.+ +... +.+ ++ +.+++.+||++|.|++++|..+.
T Consensus 106 ~~~piilvgNK~Dl~~~~~v-----~~~---~~~~--------~a~-------~~--~~~~~e~Sa~~~~~v~~~f~~l~ 160 (172)
T cd04141 106 EDIPLVLVGNKVDLESQRQV-----TTE---EGRN--------LAR-------EF--NCPFFETSAALRHYIDDAFHGLV 160 (172)
T ss_pred CCCCEEEEEEChhhhhcCcc-----CHH---HHHH--------HHH-------Hh--CCEEEEEecCCCCCHHHHHHHHH
Confidence 46899999999998643221 011 0000 101 11 46899999999999999999887
Q ss_pred HHH
Q psy7275 84 LAG 86 (150)
Q Consensus 84 e~~ 86 (150)
..+
T Consensus 161 ~~~ 163 (172)
T cd04141 161 REI 163 (172)
T ss_pred HHH
Confidence 654
No 114
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=97.90 E-value=3.5e-05 Score=68.32 Aligned_cols=28 Identities=32% Similarity=0.407 Sum_probs=24.8
Q ss_pred CcEEEeecCCCCCHHHHHHHHHHHHHHH
Q psy7275 62 LKVVGFSSVSGEGTEELLQLIKLAGEDY 89 (150)
Q Consensus 62 l~vv~VSA~TGeGideL~~~I~e~~~ey 89 (150)
.++++|||++|+|+++|++.|.+.+.+.
T Consensus 302 ~~i~~iSA~tgeGI~eL~~~L~~~l~~~ 329 (424)
T PRK12297 302 PKVFPISALTGQGLDELLYAVAELLEET 329 (424)
T ss_pred CcEEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence 5789999999999999999998877654
No 115
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=97.90 E-value=3.9e-05 Score=61.28 Aligned_cols=59 Identities=12% Similarity=0.063 Sum_probs=40.5
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK 83 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~ 83 (150)
.++|+|+|.||+|+...... .+ .+. +. . ..+++++.+||++|.|++++|..|.
T Consensus 116 ~~~piilvgNK~Dl~~~~v~------~~----~~~--------~~--------~-~~~~~~~e~SAk~~~~i~~~f~~l~ 168 (219)
T PLN03071 116 ENIPIVLCGNKVDVKNRQVK------AK----QVT--------FH--------R-KKNLQYYEISAKSNYNFEKPFLYLA 168 (219)
T ss_pred CCCcEEEEEEchhhhhccCC------HH----HHH--------HH--------H-hcCCEEEEcCCCCCCCHHHHHHHHH
Confidence 46899999999998543211 00 000 00 0 1246889999999999999999998
Q ss_pred HHHHHH
Q psy7275 84 LAGEDY 89 (150)
Q Consensus 84 e~~~ey 89 (150)
..+.+.
T Consensus 169 ~~~~~~ 174 (219)
T PLN03071 169 RKLAGD 174 (219)
T ss_pred HHHHcC
Confidence 777544
No 116
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=97.90 E-value=2e-05 Score=56.71 Aligned_cols=58 Identities=16% Similarity=0.130 Sum_probs=38.0
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHH-hhcCCcEEEeecCCCCCHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDE-FYSTLKVVGFSSVSGEGTEELLQLI 82 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~e-fy~~l~vv~VSA~TGeGideL~~~I 82 (150)
.++|+++|+||+|+.+.....++. ..+. +.. .....+++.+||++|.|++++++.|
T Consensus 100 ~~~p~iiv~nK~D~~~~~~~~~~~-------~~~~----------------~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 156 (159)
T cd04159 100 EGIPLLVLGNKNDLPGALSVDELI-------EQMN----------------LKSITDREVSCYSISCKEKTNIDIVLDWL 156 (159)
T ss_pred cCCCEEEEEeCccccCCcCHHHHH-------HHhC----------------cccccCCceEEEEEEeccCCChHHHHHHH
Confidence 467999999999986543211111 1110 000 0123578999999999999999988
Q ss_pred HH
Q psy7275 83 KL 84 (150)
Q Consensus 83 ~e 84 (150)
.+
T Consensus 157 ~~ 158 (159)
T cd04159 157 IK 158 (159)
T ss_pred hh
Confidence 64
No 117
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=97.90 E-value=3.8e-05 Score=62.95 Aligned_cols=59 Identities=7% Similarity=-0.021 Sum_probs=39.8
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK 83 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~ 83 (150)
.++|+|+|.||+|+...... ..+.+.+.+. . .....++.+||++|.|+++++..|.
T Consensus 112 ~~~piIivgNK~Dl~~~~~v-----~~~ei~~~~~------------------~-~~~~~~~evSAktg~gI~elf~~L~ 167 (247)
T cd04143 112 VKIPMVICGNKADRDFPREV-----QRDEVEQLVG------------------G-DENCAYFEVSAKKNSNLDEMFRALF 167 (247)
T ss_pred CCCcEEEEEECccchhcccc-----CHHHHHHHHH------------------h-cCCCEEEEEeCCCCCCHHHHHHHHH
Confidence 36899999999998642211 1111111111 0 1246789999999999999999998
Q ss_pred HHH
Q psy7275 84 LAG 86 (150)
Q Consensus 84 e~~ 86 (150)
...
T Consensus 168 ~~~ 170 (247)
T cd04143 168 SLA 170 (247)
T ss_pred HHh
Confidence 755
No 118
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=97.90 E-value=3.5e-05 Score=56.89 Aligned_cols=58 Identities=16% Similarity=0.111 Sum_probs=38.7
Q ss_pred CCCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHH
Q psy7275 3 DTGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLI 82 (150)
Q Consensus 3 k~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I 82 (150)
..++|+++|+||+|+...... +.+...... .+ + +.+++.+||++|.|+++++..+
T Consensus 103 ~~~~~iivv~nK~D~~~~~~~-----~~~~~~~~~------------------~~-~-~~~~~~~Sa~~~~~i~~~~~~~ 157 (161)
T cd04113 103 SPNIVVILVGNKSDLADQREV-----TFLEASRFA------------------QE-N-GLLFLETSALTGENVEEAFLKC 157 (161)
T ss_pred CCCCeEEEEEEchhcchhccC-----CHHHHHHHH------------------HH-c-CCEEEEEECCCCCCHHHHHHHH
Confidence 357899999999998653211 111111110 11 1 3789999999999999999988
Q ss_pred HHH
Q psy7275 83 KLA 85 (150)
Q Consensus 83 ~e~ 85 (150)
.+.
T Consensus 158 ~~~ 160 (161)
T cd04113 158 ARS 160 (161)
T ss_pred HHh
Confidence 653
No 119
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=97.90 E-value=3e-05 Score=57.91 Aligned_cols=56 Identities=16% Similarity=0.089 Sum_probs=37.0
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK 83 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~ 83 (150)
.++|+|+|.||+|+...... . +..++.. .+ +...+++.+||++|.|+++++..+.
T Consensus 113 ~~~piilv~nK~Dl~~~~~~---~---~~~~~~~------------------~~-~~~~~~~e~Sa~~~~~v~~~~~~~~ 167 (170)
T cd04116 113 ESFPFVVLGNKNDIPERQVS---T---EEAQAWC------------------RE-NGDYPYFETSAKDATNVAAAFEEAV 167 (170)
T ss_pred CCCcEEEEEECccccccccC---H---HHHHHHH------------------HH-CCCCeEEEEECCCCCCHHHHHHHHH
Confidence 46899999999998632211 0 1111111 11 1224789999999999999999886
Q ss_pred H
Q psy7275 84 L 84 (150)
Q Consensus 84 e 84 (150)
+
T Consensus 168 ~ 168 (170)
T cd04116 168 R 168 (170)
T ss_pred h
Confidence 4
No 120
>PRK00098 GTPase RsgA; Reviewed
Probab=97.90 E-value=1.8e-05 Score=66.48 Aligned_cols=53 Identities=25% Similarity=0.344 Sum_probs=36.2
Q ss_pred CCCCEEEeeecCCCCCch-hhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHK-YAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLI 82 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~-~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I 82 (150)
.++|+|+|+||+|+.+.. ...+|...+ .. .+.+++.+||.+|+|+++|+..+
T Consensus 110 ~~ip~iIVlNK~DL~~~~~~~~~~~~~~-------------------------~~--~g~~v~~vSA~~g~gi~~L~~~l 162 (298)
T PRK00098 110 NGIKPIIVLNKIDLLDDLEEARELLALY-------------------------RA--IGYDVLELSAKEGEGLDELKPLL 162 (298)
T ss_pred CCCCEEEEEEhHHcCCCHHHHHHHHHHH-------------------------HH--CCCeEEEEeCCCCccHHHHHhhc
Confidence 478999999999996322 112222110 01 13588999999999999998876
Q ss_pred H
Q psy7275 83 K 83 (150)
Q Consensus 83 ~ 83 (150)
.
T Consensus 163 ~ 163 (298)
T PRK00098 163 A 163 (298)
T ss_pred c
Confidence 4
No 121
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=97.89 E-value=4e-05 Score=60.98 Aligned_cols=59 Identities=5% Similarity=0.002 Sum_probs=38.2
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK 83 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~ 83 (150)
.++|+|+|.||+|+........ + +... +. .+ ..+..++.+||++|.|++++|..+.
T Consensus 104 ~~~piilVgNK~DL~~~~~v~~-----~---~~~~--------~a-------~~-~~~~~~~etSAktg~gV~e~F~~l~ 159 (202)
T cd04120 104 EDAELLLVGNKLDCETDREISR-----Q---QGEK--------FA-------QQ-ITGMRFCEASAKDNFNVDEIFLKLV 159 (202)
T ss_pred CCCcEEEEEECcccccccccCH-----H---HHHH--------HH-------Hh-cCCCEEEEecCCCCCCHHHHHHHHH
Confidence 3689999999999864322100 0 0000 00 01 1246789999999999999998887
Q ss_pred HHH
Q psy7275 84 LAG 86 (150)
Q Consensus 84 e~~ 86 (150)
+.+
T Consensus 160 ~~~ 162 (202)
T cd04120 160 DDI 162 (202)
T ss_pred HHH
Confidence 544
No 122
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=97.89 E-value=4.7e-05 Score=57.10 Aligned_cols=59 Identities=8% Similarity=0.127 Sum_probs=39.3
Q ss_pred CCCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHH
Q psy7275 3 DTGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLI 82 (150)
Q Consensus 3 k~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I 82 (150)
..++|+|+|.||+|+.+..... . .+... + .+-+...+++.+||++|.|+++++..|
T Consensus 104 ~~~~piiiv~nK~D~~~~~~~~--~------~~~~~--------~--------~~~~~~~~~~~~SA~~~~~i~~~f~~i 159 (168)
T cd04177 104 SDNVPMVLVGNKADLEDDRQVS--R------EDGVS--------L--------SQQWGNVPFYETSARKRTNVDEVFIDL 159 (168)
T ss_pred CCCCCEEEEEEChhccccCccC--H------HHHHH--------H--------HHHcCCceEEEeeCCCCCCHHHHHHHH
Confidence 3578999999999986543210 0 01000 0 111334789999999999999999988
Q ss_pred HHH
Q psy7275 83 KLA 85 (150)
Q Consensus 83 ~e~ 85 (150)
...
T Consensus 160 ~~~ 162 (168)
T cd04177 160 VRQ 162 (168)
T ss_pred HHH
Confidence 653
No 123
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=97.89 E-value=2.4e-05 Score=63.41 Aligned_cols=50 Identities=18% Similarity=0.026 Sum_probs=38.0
Q ss_pred CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHH
Q psy7275 5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKL 84 (150)
Q Consensus 5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e 84 (150)
.+|+|+|+||+|+.+.+... .+.....++.+||.+|.|++++++.|.+
T Consensus 176 y~p~iiV~NK~Dl~~~~~~~--------------------------------~~~~~~~~~~~SA~~g~gi~~l~~~i~~ 223 (233)
T cd01896 176 YIPCLYVYNKIDLISIEELD--------------------------------LLARQPNSVVISAEKGLNLDELKERIWD 223 (233)
T ss_pred EeeEEEEEECccCCCHHHHH--------------------------------HHhcCCCEEEEcCCCCCCHHHHHHHHHH
Confidence 46999999999997654321 1112346899999999999999999887
Q ss_pred HH
Q psy7275 85 AG 86 (150)
Q Consensus 85 ~~ 86 (150)
.+
T Consensus 224 ~L 225 (233)
T cd01896 224 KL 225 (233)
T ss_pred Hh
Confidence 54
No 124
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=97.89 E-value=2.4e-05 Score=67.45 Aligned_cols=50 Identities=30% Similarity=0.336 Sum_probs=36.1
Q ss_pred CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHH
Q psy7275 5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKL 84 (150)
Q Consensus 5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e 84 (150)
+.|+|+|+||+|+.+.... .... . ...+++.|||++|+|+++|++.|.+
T Consensus 301 ~~piIlV~NK~Dl~~~~~v-----------~~~~------------------~--~~~~~i~iSAktg~GI~eL~~~I~~ 349 (351)
T TIGR03156 301 DIPQLLVYNKIDLLDEPRI-----------ERLE------------------E--GYPEAVFVSAKTGEGLDLLLEAIAE 349 (351)
T ss_pred CCCEEEEEEeecCCChHhH-----------HHHH------------------h--CCCCEEEEEccCCCCHHHHHHHHHh
Confidence 6799999999998653221 0000 0 1236899999999999999999875
Q ss_pred H
Q psy7275 85 A 85 (150)
Q Consensus 85 ~ 85 (150)
.
T Consensus 350 ~ 350 (351)
T TIGR03156 350 R 350 (351)
T ss_pred h
Confidence 3
No 125
>PTZ00369 Ras-like protein; Provisional
Probab=97.89 E-value=5e-05 Score=58.56 Aligned_cols=57 Identities=14% Similarity=0.074 Sum_probs=38.1
Q ss_pred CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHH
Q psy7275 5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKL 84 (150)
Q Consensus 5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e 84 (150)
++|+|+|.||+|+.+..... .+ ++.. + ...+ ..+++.+||++|.|+++++..+.+
T Consensus 110 ~~piiiv~nK~Dl~~~~~i~-----~~---~~~~--------~-------~~~~--~~~~~e~Sak~~~gi~~~~~~l~~ 164 (189)
T PTZ00369 110 RVPMILVGNKCDLDSERQVS-----TG---EGQE--------L-------AKSF--GIPFLETSAKQRVNVDEAFYELVR 164 (189)
T ss_pred CCCEEEEEECcccccccccC-----HH---HHHH--------H-------HHHh--CCEEEEeeCCCCCCHHHHHHHHHH
Confidence 68999999999985432110 00 0000 0 0111 358899999999999999999976
Q ss_pred HH
Q psy7275 85 AG 86 (150)
Q Consensus 85 ~~ 86 (150)
.+
T Consensus 165 ~l 166 (189)
T PTZ00369 165 EI 166 (189)
T ss_pred HH
Confidence 55
No 126
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=97.89 E-value=3.1e-05 Score=65.76 Aligned_cols=57 Identities=19% Similarity=0.254 Sum_probs=39.9
Q ss_pred CCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHHH
Q psy7275 6 FPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKLA 85 (150)
Q Consensus 6 lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e~ 85 (150)
.+-|+|+||+|+++.... |.+.+.+.+ ...++..++++|||++|+|+++|.++|.+.
T Consensus 231 ~ADIVVLNKiDLl~~~~~-----dle~~~~~l------------------r~lnp~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 231 AASLMLLNKVDLLPYLNF-----DVEKCIACA------------------REVNPEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred cCcEEEEEhHHcCcccHH-----HHHHHHHHH------------------HhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 467999999999753210 112222222 233567899999999999999999998763
No 127
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=97.88 E-value=2.3e-05 Score=59.90 Aligned_cols=52 Identities=19% Similarity=0.239 Sum_probs=32.5
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTE 76 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGid 76 (150)
.+.|+|+|+||+|+.++... ....+.+.+. +..+....+++++||++|+|++
T Consensus 128 ~~~pviiv~nK~D~~~~~~~---~~~~~~i~~~------------------l~~~~~~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 128 RGIPVLIVLTKADKLKKSEL---NKQLKKIKKA------------------LKKDADDPSVQLFSSLKKTGID 179 (179)
T ss_pred cCCCEEEEEECcccCCHHHH---HHHHHHHHHH------------------HhhccCCCceEEEECCCCCCCC
Confidence 46899999999998754321 1111111111 1122234589999999999984
No 128
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=97.87 E-value=5.1e-05 Score=58.79 Aligned_cols=26 Identities=4% Similarity=0.075 Sum_probs=23.1
Q ss_pred CcEEEeecCCCCCHHHHHHHHHHHHH
Q psy7275 62 LKVVGFSSVSGEGTEELLQLIKLAGE 87 (150)
Q Consensus 62 l~vv~VSA~TGeGideL~~~I~e~~~ 87 (150)
.+++.+||++|.|+++++..+.+.+.
T Consensus 141 ~~~~e~SAk~g~~v~~lf~~l~~~l~ 166 (182)
T cd04128 141 APLIFCSTSHSINVQKIFKIVLAKAF 166 (182)
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 67899999999999999999987663
No 129
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=97.87 E-value=2.8e-05 Score=59.12 Aligned_cols=56 Identities=20% Similarity=0.103 Sum_probs=35.6
Q ss_pred CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhh-cCCcEEEeecCCCCCHHHHHHHHH
Q psy7275 5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFY-STLKVVGFSSVSGEGTEELLQLIK 83 (150)
Q Consensus 5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy-~~l~vv~VSA~TGeGideL~~~I~ 83 (150)
+.|+|+|+||+|+.+... .+...+.+. +.... ....++++||+||+|+++++..|.
T Consensus 110 ~~piilv~NK~Dl~~~~~-------~~~i~~~~~----------------~~~~~~~~~~~~~~SAk~g~gv~~~~~~l~ 166 (168)
T cd04149 110 DALLLVFANKQDLPDAMK-------PHEIQEKLG----------------LTRIRDRNWYVQPSCATSGDGLYEGLTWLS 166 (168)
T ss_pred CCcEEEEEECcCCccCCC-------HHHHHHHcC----------------CCccCCCcEEEEEeeCCCCCChHHHHHHHh
Confidence 579999999999854211 111122211 00001 123678999999999999998875
No 130
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=97.87 E-value=3.5e-05 Score=72.81 Aligned_cols=59 Identities=20% Similarity=0.282 Sum_probs=41.9
Q ss_pred CCCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHH
Q psy7275 3 DTGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLI 82 (150)
Q Consensus 3 k~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I 82 (150)
+.++|+|+|+||+|+....... .|.+.+.+. + +.+++++||.+|+|++++.+.+
T Consensus 110 e~giPvIvVlNK~Dl~~~~~i~---id~~~L~~~---------------------L--G~pVvpiSA~~g~GIdeL~~~I 163 (772)
T PRK09554 110 ELGIPCIVALNMLDIAEKQNIR---IDIDALSAR---------------------L--GCPVIPLVSTRGRGIEALKLAI 163 (772)
T ss_pred HcCCCEEEEEEchhhhhccCcH---HHHHHHHHH---------------------h--CCCEEEEEeecCCCHHHHHHHH
Confidence 4578999999999986432211 122222211 1 4699999999999999999999
Q ss_pred HHHHH
Q psy7275 83 KLAGE 87 (150)
Q Consensus 83 ~e~~~ 87 (150)
.+...
T Consensus 164 ~~~~~ 168 (772)
T PRK09554 164 DRHQA 168 (772)
T ss_pred HHhhh
Confidence 88653
No 131
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=97.87 E-value=3e-05 Score=71.14 Aligned_cols=58 Identities=31% Similarity=0.263 Sum_probs=40.1
Q ss_pred CCCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHH
Q psy7275 3 DTGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLI 82 (150)
Q Consensus 3 k~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I 82 (150)
+.+.|+|+|+||+|+.+..... .|.+ .+. +- -+.+++++||++|+|++++++.+
T Consensus 97 ~~~~PiIIVlNK~Dl~~~~~i~---~d~~----~L~------------------~~-lg~pvv~tSA~tg~Gi~eL~~~i 150 (591)
T TIGR00437 97 ELGIPMILALNLVDEAEKKGIR---IDEE----KLE------------------ER-LGVPVVPTSATEGRGIERLKDAI 150 (591)
T ss_pred hcCCCEEEEEehhHHHHhCCCh---hhHH----HHH------------------HH-cCCCEEEEECCCCCCHHHHHHHH
Confidence 3578999999999985432211 0111 111 11 14799999999999999999999
Q ss_pred HHHH
Q psy7275 83 KLAG 86 (150)
Q Consensus 83 ~e~~ 86 (150)
.+..
T Consensus 151 ~~~~ 154 (591)
T TIGR00437 151 RKAI 154 (591)
T ss_pred HHHh
Confidence 8754
No 132
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=97.87 E-value=5.5e-05 Score=55.71 Aligned_cols=56 Identities=11% Similarity=0.064 Sum_probs=38.0
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK 83 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~ 83 (150)
...|+++|.||+|+....... ++...+. . ....+++.+||++|.|++++++.+.
T Consensus 105 ~~~~~~iv~nK~D~~~~~~~~---~~~~~~~----------------------~-~~~~~~~~~Sa~~~~gi~~~~~~~~ 158 (161)
T cd01863 105 NDIVKMLVGNKIDKENREVTR---EEGLKFA----------------------R-KHNMLFIETSAKTRDGVQQAFEELV 158 (161)
T ss_pred CCCcEEEEEECCcccccccCH---HHHHHHH----------------------H-HcCCEEEEEecCCCCCHHHHHHHHH
Confidence 467999999999997332211 1111111 0 1246899999999999999999876
Q ss_pred HH
Q psy7275 84 LA 85 (150)
Q Consensus 84 e~ 85 (150)
+.
T Consensus 159 ~~ 160 (161)
T cd01863 159 EK 160 (161)
T ss_pred Hh
Confidence 54
No 133
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.86 E-value=5.5e-05 Score=63.13 Aligned_cols=57 Identities=19% Similarity=0.402 Sum_probs=41.4
Q ss_pred CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHH
Q psy7275 5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKL 84 (150)
Q Consensus 5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e 84 (150)
+.|.|+|+||+|+.+.....+|++-++ + .+.+++.|||.+|.|+++|.+.+.+
T Consensus 51 ~kp~iiVlNK~DL~~~~~~~~~~~~~~-------------------------~--~~~~vi~vSa~~~~gi~~L~~~l~~ 103 (287)
T PRK09563 51 NKPRLLILNKSDLADPEVTKKWIEYFE-------------------------E--QGIKALAINAKKGQGVKKILKAAKK 103 (287)
T ss_pred CCCEEEEEEchhcCCHHHHHHHHHHHH-------------------------H--cCCeEEEEECCCcccHHHHHHHHHH
Confidence 579999999999976543345542111 0 1247899999999999999999877
Q ss_pred HHHH
Q psy7275 85 AGED 88 (150)
Q Consensus 85 ~~~e 88 (150)
.+.+
T Consensus 104 ~l~~ 107 (287)
T PRK09563 104 LLKE 107 (287)
T ss_pred HHHH
Confidence 6643
No 134
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=97.86 E-value=2.9e-05 Score=56.12 Aligned_cols=51 Identities=18% Similarity=0.270 Sum_probs=39.2
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK 83 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~ 83 (150)
.+.|+|+|+||+|+.+.... . ......+++.+||.+|.|+++|++.|.
T Consensus 106 ~~~~vi~v~nK~D~~~~~~~-------------~-------------------~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 153 (157)
T cd04164 106 ADKPIIVVLNKSDLLPDSEL-------------L-------------------SLLAGKPIIAISAKTGEGLDELKEALL 153 (157)
T ss_pred cCCCEEEEEEchhcCCcccc-------------c-------------------cccCCCceEEEECCCCCCHHHHHHHHH
Confidence 46899999999998764431 0 012346899999999999999999987
Q ss_pred HHH
Q psy7275 84 LAG 86 (150)
Q Consensus 84 e~~ 86 (150)
+.+
T Consensus 154 ~~~ 156 (157)
T cd04164 154 ELA 156 (157)
T ss_pred Hhh
Confidence 653
No 135
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=97.86 E-value=3.7e-05 Score=61.21 Aligned_cols=29 Identities=10% Similarity=0.109 Sum_probs=24.8
Q ss_pred HhhcCCcEEEeecCCCCCHHHHHHHHHHH
Q psy7275 57 EFYSTLKVVGFSSVSGEGTEELLQLIKLA 85 (150)
Q Consensus 57 efy~~l~vv~VSA~TGeGideL~~~I~e~ 85 (150)
.+....+++.+||+||+|++++++.+.+.
T Consensus 166 ~~~~~~~i~~~Sa~~g~gi~el~~~i~~~ 194 (199)
T TIGR00101 166 KMRGEKPFIFTNLKTKEGLDTVIDWIEHY 194 (199)
T ss_pred HhCCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 34556899999999999999999998854
No 136
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=97.84 E-value=3.7e-05 Score=59.63 Aligned_cols=51 Identities=27% Similarity=0.312 Sum_probs=37.4
Q ss_pred CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHH
Q psy7275 5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKL 84 (150)
Q Consensus 5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e 84 (150)
+.|+|+|+||+|+.+.... + ... .....+++.+||++|.|++++++.|..
T Consensus 153 ~~~viiV~NK~Dl~~~~~~--~--------~~~--------------------~~~~~~~~~~Sa~~~~gi~~l~~~L~~ 202 (204)
T cd01878 153 DIPMILVLNKIDLLDDEEL--E--------ERL--------------------EAGRPDAVFISAKTGEGLDELLEAIEE 202 (204)
T ss_pred CCCEEEEEEccccCChHHH--H--------HHh--------------------hcCCCceEEEEcCCCCCHHHHHHHHHh
Confidence 5799999999999765431 1 000 012358999999999999999998865
Q ss_pred H
Q psy7275 85 A 85 (150)
Q Consensus 85 ~ 85 (150)
.
T Consensus 203 ~ 203 (204)
T cd01878 203 L 203 (204)
T ss_pred h
Confidence 4
No 137
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=97.84 E-value=4.2e-05 Score=56.21 Aligned_cols=55 Identities=15% Similarity=0.093 Sum_probs=37.8
Q ss_pred CCCEEEeeecCCCCCchh-hHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275 5 GFPYTELVVGIDIVNHKY-AIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK 83 (150)
Q Consensus 5 ~lP~IlV~NKiDl~~~~~-~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~ 83 (150)
+.|+|+|.||+|+..+.. ..++. ... ... .+.+++.+||++|.|++++++.+.
T Consensus 105 ~~~iilv~nK~D~~~~~~~~~~~~------~~~-------------------~~~-~~~~~~~~Sa~~~~~v~~l~~~i~ 158 (161)
T cd01861 105 DVIIVLVGNKTDLSDKRQVSTEEG------EKK-------------------AKE-LNAMFIETSAKAGHNVKELFRKIA 158 (161)
T ss_pred CCEEEEEEEChhccccCccCHHHH------HHH-------------------HHH-hCCEEEEEeCCCCCCHHHHHHHHH
Confidence 589999999999854322 11111 000 011 247899999999999999999987
Q ss_pred HH
Q psy7275 84 LA 85 (150)
Q Consensus 84 e~ 85 (150)
+.
T Consensus 159 ~~ 160 (161)
T cd01861 159 SA 160 (161)
T ss_pred Hh
Confidence 64
No 138
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=97.83 E-value=5.7e-05 Score=57.86 Aligned_cols=61 Identities=20% Similarity=0.216 Sum_probs=38.5
Q ss_pred CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHH
Q psy7275 5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKL 84 (150)
Q Consensus 5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e 84 (150)
+.|+|+|.||+|+..+......+ +.+..+. + ..++ ..+++.+||++|.|++++++.+.+
T Consensus 105 ~~piilv~nK~Dl~~~~~~~~~v-~~~~~~~-----------~-------~~~~--~~~~~~~Sa~~~~gv~~l~~~i~~ 163 (193)
T cd04118 105 HCKIYLCGTKSDLIEQDRSLRQV-DFHDVQD-----------F-------ADEI--KAQHFETSSKTGQNVDELFQKVAE 163 (193)
T ss_pred CCCEEEEEEcccccccccccCcc-CHHHHHH-----------H-------HHHc--CCeEEEEeCCCCCCHHHHHHHHHH
Confidence 68999999999986542110000 0000000 0 0111 357899999999999999999876
Q ss_pred HH
Q psy7275 85 AG 86 (150)
Q Consensus 85 ~~ 86 (150)
.+
T Consensus 164 ~~ 165 (193)
T cd04118 164 DF 165 (193)
T ss_pred HH
Confidence 55
No 139
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=97.83 E-value=4.2e-05 Score=58.53 Aligned_cols=24 Identities=13% Similarity=0.206 Sum_probs=21.3
Q ss_pred CCcEEEeecCCCCCHHHHHHHHHH
Q psy7275 61 TLKVVGFSSVSGEGTEELLQLIKL 84 (150)
Q Consensus 61 ~l~vv~VSA~TGeGideL~~~I~e 84 (150)
..+++.+||+||+|++++++.+.+
T Consensus 149 ~~~~~e~Sa~~~~~i~~~f~~l~~ 172 (174)
T cd01871 149 AVKYLECSALTQKGLKTVFDEAIR 172 (174)
T ss_pred CcEEEEecccccCCHHHHHHHHHH
Confidence 358899999999999999998865
No 140
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=97.82 E-value=7.8e-05 Score=55.05 Aligned_cols=57 Identities=19% Similarity=0.233 Sum_probs=37.8
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK 83 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~ 83 (150)
.+.|+|+|.||+|+.+...... . ....+. . ..+.+++.+||++|.|++++++.+.
T Consensus 106 ~~~p~ilv~nK~Dl~~~~~~~~-----~-~~~~~~------------------~-~~~~~~~~~Sa~~~~gi~~l~~~l~ 160 (164)
T cd04101 106 KHMPGVLVGNKMDLADKAEVTD-----A-QAQAFA------------------Q-ANQLKFFKTSALRGVGYEEPFESLA 160 (164)
T ss_pred CCCCEEEEEECcccccccCCCH-----H-HHHHHH------------------H-HcCCeEEEEeCCCCCChHHHHHHHH
Confidence 3589999999999865432100 0 000000 0 1135789999999999999999887
Q ss_pred HH
Q psy7275 84 LA 85 (150)
Q Consensus 84 e~ 85 (150)
+.
T Consensus 161 ~~ 162 (164)
T cd04101 161 RA 162 (164)
T ss_pred HH
Confidence 65
No 141
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=97.82 E-value=6.7e-05 Score=58.97 Aligned_cols=58 Identities=10% Similarity=0.057 Sum_probs=38.8
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK 83 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~ 83 (150)
.+.|+|+|.||+|+....... .+..++ +.+ . .+.+++.+||++|.|++++|..+.
T Consensus 109 ~~~piilVGNK~DL~~~~~v~-----~~~~~~-----------~a~-------~--~~~~~~e~SAk~g~~V~~~F~~l~ 163 (189)
T cd04121 109 PGVPKILVGNRLHLAFKRQVA-----TEQAQA-----------YAE-------R--NGMTFFEVSPLCNFNITESFTELA 163 (189)
T ss_pred CCCCEEEEEECccchhccCCC-----HHHHHH-----------HHH-------H--cCCEEEEecCCCCCCHHHHHHHHH
Confidence 468999999999985422110 000000 101 1 246899999999999999999998
Q ss_pred HHH
Q psy7275 84 LAG 86 (150)
Q Consensus 84 e~~ 86 (150)
+.+
T Consensus 164 ~~i 166 (189)
T cd04121 164 RIV 166 (189)
T ss_pred HHH
Confidence 655
No 142
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=97.82 E-value=3.4e-05 Score=60.82 Aligned_cols=25 Identities=16% Similarity=0.090 Sum_probs=21.7
Q ss_pred CCcEEEeecCCCCCHHHHHHHHHHH
Q psy7275 61 TLKVVGFSSVSGEGTEELLQLIKLA 85 (150)
Q Consensus 61 ~l~vv~VSA~TGeGideL~~~I~e~ 85 (150)
+.+++.+||+||+|++++|..+.++
T Consensus 170 ~~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 170 GIPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 3589999999999999999988653
No 143
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.81 E-value=3.5e-05 Score=64.46 Aligned_cols=54 Identities=19% Similarity=0.188 Sum_probs=37.8
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK 83 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~ 83 (150)
.++|.|+|+||+|+.+......|.. .. . ..+.+++.+||.+|.|+++|...|.
T Consensus 108 ~~ip~iIVlNK~DL~~~~~~~~~~~-------~~------------------~--~~g~~v~~vSA~~g~gi~~L~~~L~ 160 (287)
T cd01854 108 AGIEPVIVLTKADLLDDEEEELELV-------EA------------------L--ALGYPVLAVSAKTGEGLDELREYLK 160 (287)
T ss_pred cCCCEEEEEEHHHCCChHHHHHHHH-------HH------------------H--hCCCeEEEEECCCCccHHHHHhhhc
Confidence 5789999999999976432112210 00 0 1246899999999999999988776
Q ss_pred H
Q psy7275 84 L 84 (150)
Q Consensus 84 e 84 (150)
.
T Consensus 161 ~ 161 (287)
T cd01854 161 G 161 (287)
T ss_pred c
Confidence 4
No 144
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=97.81 E-value=5.9e-05 Score=60.96 Aligned_cols=26 Identities=15% Similarity=0.056 Sum_probs=22.6
Q ss_pred CcEEEeecCCCCCHHHHHHHHHHHHH
Q psy7275 62 LKVVGFSSVSGEGTEELLQLIKLAGE 87 (150)
Q Consensus 62 l~vv~VSA~TGeGideL~~~I~e~~~ 87 (150)
.+++.+||+||.|++++|..+.+.+.
T Consensus 165 ~~~~E~SA~tg~~V~elf~~i~~~~~ 190 (220)
T cd04126 165 KMCFETSAKTGYNVDELFEYLFNLVL 190 (220)
T ss_pred ceEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 47899999999999999998886553
No 145
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=97.80 E-value=5.3e-05 Score=60.58 Aligned_cols=59 Identities=17% Similarity=0.047 Sum_probs=40.1
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK 83 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~ 83 (150)
.++|+|+|.||+|+.+..... .+. ...+ ...+ +.+++.+||++|.|++++++.+.
T Consensus 105 ~~~piilV~NK~Dl~~~~~v~-----~~~-~~~~-----------------a~~~--~~~~~e~SA~~~~gv~~l~~~l~ 159 (221)
T cd04148 105 EDRPIILVGNKSDLARSREVS-----VQE-GRAC-----------------AVVF--DCKFIETSAGLQHNVDELLEGIV 159 (221)
T ss_pred CCCCEEEEEEChhccccceec-----HHH-HHHH-----------------HHHc--CCeEEEecCCCCCCHHHHHHHHH
Confidence 468999999999986543210 000 0000 0112 35789999999999999999998
Q ss_pred HHHH
Q psy7275 84 LAGE 87 (150)
Q Consensus 84 e~~~ 87 (150)
..+.
T Consensus 160 ~~~~ 163 (221)
T cd04148 160 RQIR 163 (221)
T ss_pred HHHH
Confidence 7664
No 146
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=97.80 E-value=7.6e-05 Score=58.18 Aligned_cols=59 Identities=14% Similarity=0.009 Sum_probs=39.7
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK 83 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~ 83 (150)
...|+|+|.||+|+....... .+ +... +. .. .+.+++.+||++|.|+++++..|.
T Consensus 109 ~~~piivVgNK~Dl~~~~~~~-----~~---~~~~--------~~-------~~--~~~~~~e~Sa~~~~gi~~lf~~l~ 163 (199)
T cd04110 109 DDVCKVLVGNKNDDPERKVVE-----TE---DAYK--------FA-------GQ--MGISLFETSAKENINVEEMFNCIT 163 (199)
T ss_pred CCCCEEEEEECcccccccccC-----HH---HHHH--------HH-------HH--cCCEEEEEECCCCcCHHHHHHHHH
Confidence 357999999999987543210 00 0000 00 01 136899999999999999999998
Q ss_pred HHHH
Q psy7275 84 LAGE 87 (150)
Q Consensus 84 e~~~ 87 (150)
..+-
T Consensus 164 ~~~~ 167 (199)
T cd04110 164 ELVL 167 (199)
T ss_pred HHHH
Confidence 7663
No 147
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=97.80 E-value=8.7e-05 Score=54.62 Aligned_cols=57 Identities=23% Similarity=0.158 Sum_probs=38.0
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK 83 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~ 83 (150)
...|+|+|.||+|+.+.... +.+...... .+ + +.+++.+||++|.|+++++..|.
T Consensus 105 ~~~~iivv~nK~D~~~~~~~-----~~~~~~~~~------------------~~-~-~~~~~~~Sa~~~~~v~~l~~~l~ 159 (163)
T cd01860 105 PNIIIALVGNKADLESKRQV-----STEEAQEYA------------------DE-N-GLLFFETSAKTGENVNELFTEIA 159 (163)
T ss_pred CCCeEEEEEECccccccCcC-----CHHHHHHHH------------------HH-c-CCEEEEEECCCCCCHHHHHHHHH
Confidence 46799999999998642211 011001100 01 1 36899999999999999999987
Q ss_pred HH
Q psy7275 84 LA 85 (150)
Q Consensus 84 e~ 85 (150)
+.
T Consensus 160 ~~ 161 (163)
T cd01860 160 KK 161 (163)
T ss_pred HH
Confidence 65
No 148
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=97.76 E-value=6e-05 Score=69.24 Aligned_cols=62 Identities=21% Similarity=0.337 Sum_probs=40.3
Q ss_pred CCCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHH
Q psy7275 3 DTGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLI 82 (150)
Q Consensus 3 k~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I 82 (150)
..++|+|+|+||+|+.+.+. +.....+.. .....+.|....+++++||++|+|+++|++.|
T Consensus 185 ~~~vPiIVviNKiDl~~~~~--------e~v~~~L~~-----------~g~~~~~~~~~~~~v~iSAktGeGI~eLl~~I 245 (587)
T TIGR00487 185 AANVPIIVAINKIDKPEANP--------DRVKQELSE-----------YGLVPEDWGGDTIFVPVSALTGDGIDELLDMI 245 (587)
T ss_pred HcCCCEEEEEECcccccCCH--------HHHHHHHHH-----------hhhhHHhcCCCceEEEEECCCCCChHHHHHhh
Confidence 35789999999999865322 111111110 00112234345689999999999999999988
Q ss_pred H
Q psy7275 83 K 83 (150)
Q Consensus 83 ~ 83 (150)
.
T Consensus 246 ~ 246 (587)
T TIGR00487 246 L 246 (587)
T ss_pred h
Confidence 6
No 149
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=97.76 E-value=0.00011 Score=51.06 Aligned_cols=58 Identities=21% Similarity=0.180 Sum_probs=40.2
Q ss_pred CCCCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHH
Q psy7275 2 YDTGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQL 81 (150)
Q Consensus 2 yk~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~ 81 (150)
...+.|+|+|+||+|+.+........ .... . ......+++.+||.+|.|++++++.
T Consensus 99 ~~~~~~~ivv~nk~D~~~~~~~~~~~-----~~~~------------------~-~~~~~~~~~~~s~~~~~~i~~~~~~ 154 (157)
T cd00882 99 EGENIPIILVGNKIDLPEERVVSEEE-----LAEQ------------------L-AKELGVPYFETSAKTGENVEELFEE 154 (157)
T ss_pred ccCCCcEEEEEeccccccccchHHHH-----HHHH------------------H-HhhcCCcEEEEecCCCCChHHHHHH
Confidence 34678999999999997665431110 0000 0 1124579999999999999999998
Q ss_pred HH
Q psy7275 82 IK 83 (150)
Q Consensus 82 I~ 83 (150)
|.
T Consensus 155 l~ 156 (157)
T cd00882 155 LA 156 (157)
T ss_pred Hh
Confidence 75
No 150
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=97.76 E-value=5.6e-05 Score=58.66 Aligned_cols=25 Identities=20% Similarity=0.247 Sum_probs=22.5
Q ss_pred CcEEEeecCCCCCHHHHHHHHHHHH
Q psy7275 62 LKVVGFSSVSGEGTEELLQLIKLAG 86 (150)
Q Consensus 62 l~vv~VSA~TGeGideL~~~I~e~~ 86 (150)
.+++.+||++|+|++++|..+.+.+
T Consensus 152 ~~~~e~SAk~g~~v~e~f~~l~~~~ 176 (191)
T cd01875 152 VKYLECSALNQDGVKEVFAEAVRAV 176 (191)
T ss_pred cEEEEeCCCCCCCHHHHHHHHHHHH
Confidence 5899999999999999999998755
No 151
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=97.75 E-value=6.4e-05 Score=65.63 Aligned_cols=59 Identities=19% Similarity=0.261 Sum_probs=38.4
Q ss_pred CEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHHH
Q psy7275 7 PYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKLA 85 (150)
Q Consensus 7 P~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e~ 85 (150)
|+|+|+||+|+.+.+...+. ++.+.+.+. . .+....+++++||++|+|+++|+++|...
T Consensus 136 ~iIVvvNK~Dl~~~~~~~~~---~~~i~~~l~-----------~------~~~~~~~ii~vSA~~g~gi~~L~e~L~~~ 194 (406)
T TIGR03680 136 NIVIVQNKIDLVSKEKALEN---YEEIKEFVK-----------G------TVAENAPIIPVSALHNANIDALLEAIEKF 194 (406)
T ss_pred eEEEEEEccccCCHHHHHHH---HHHHHhhhh-----------h------cccCCCeEEEEECCCCCChHHHHHHHHHh
Confidence 68999999999765432111 111111111 0 01235689999999999999999998764
No 152
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=97.75 E-value=9.2e-05 Score=57.01 Aligned_cols=56 Identities=25% Similarity=0.350 Sum_probs=36.5
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK 83 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~ 83 (150)
+..|+|=|+||+|+...+...++. .+.|. .- .--+++.|||.+|+|+++|.+.|.
T Consensus 88 f~~pvIGVITK~Dl~~~~~~i~~a------~~~L~------------------~a-G~~~if~vS~~~~eGi~eL~~~L~ 142 (143)
T PF10662_consen 88 FNKPVIGVITKIDLPSDDANIERA------KKWLK------------------NA-GVKEIFEVSAVTGEGIEELKDYLE 142 (143)
T ss_pred cCCCEEEEEECccCccchhhHHHH------HHHHH------------------Hc-CCCCeEEEECCCCcCHHHHHHHHh
Confidence 357999999999998322211111 11111 00 112679999999999999999886
Q ss_pred H
Q psy7275 84 L 84 (150)
Q Consensus 84 e 84 (150)
+
T Consensus 143 ~ 143 (143)
T PF10662_consen 143 E 143 (143)
T ss_pred C
Confidence 4
No 153
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=97.75 E-value=9.2e-05 Score=53.05 Aligned_cols=55 Identities=25% Similarity=0.278 Sum_probs=36.9
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK 83 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~ 83 (150)
..+|+++|+||+|+..+... +.+...... .+ ...+++.+||.+|.|+++++..|.
T Consensus 104 ~~~p~ivv~nK~D~~~~~~~-----~~~~~~~~~------------------~~--~~~~~~~~sa~~~~~i~~~~~~i~ 158 (159)
T cd00154 104 ENIPIILVGNKIDLEDQRQV-----STEEAQQFA------------------KE--NGLLFFETSAKTGENVEELFQSLA 158 (159)
T ss_pred CCCcEEEEEEcccccccccc-----cHHHHHHHH------------------HH--cCCeEEEEecCCCCCHHHHHHHHh
Confidence 36899999999998632221 011111110 11 246899999999999999999875
No 154
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=97.75 E-value=7.3e-05 Score=56.80 Aligned_cols=57 Identities=23% Similarity=0.226 Sum_probs=36.3
Q ss_pred CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275 5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK 83 (150)
Q Consensus 5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~ 83 (150)
++|+++|+||+|+.+... .+.+.+.+.... ..+ ...+++++||++|+|+++++..|.
T Consensus 116 ~~p~viv~NK~Dl~~~~~-------~~~i~~~l~~~~-------------~~~--~~~~~~~~SA~~g~gi~e~~~~l~ 172 (174)
T cd04153 116 KAVLLVLANKQDLKGAMT-------PAEISESLGLTS-------------IRD--HTWHIQGCCALTGEGLPEGLDWIA 172 (174)
T ss_pred CCCEEEEEECCCCCCCCC-------HHHHHHHhCccc-------------ccC--CceEEEecccCCCCCHHHHHHHHh
Confidence 579999999999864211 111222221000 000 134789999999999999999875
No 155
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=97.75 E-value=0.00014 Score=54.62 Aligned_cols=57 Identities=12% Similarity=0.017 Sum_probs=38.5
Q ss_pred CCCCEEEeeecCCCCCchhh-HHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYA-IEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLI 82 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~-~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I 82 (150)
.+.|+|+|.||+|+...... .+.. .. + ... ....++.+||++|+|+++++..+
T Consensus 108 ~~~pvivv~nK~Dl~~~~~~~~~~~------~~-----------~-------~~~--~~~~~~e~Sa~~~~~i~~~~~~~ 161 (168)
T cd01866 108 SNMTIMLIGNKCDLESRREVSYEEG------EA-----------F-------AKE--HGLIFMETSAKTASNVEEAFINT 161 (168)
T ss_pred CCCcEEEEEECcccccccCCCHHHH------HH-----------H-------HHH--cCCEEEEEeCCCCCCHHHHHHHH
Confidence 36899999999998643211 1111 00 0 001 14678999999999999999888
Q ss_pred HHHH
Q psy7275 83 KLAG 86 (150)
Q Consensus 83 ~e~~ 86 (150)
.+.+
T Consensus 162 ~~~~ 165 (168)
T cd01866 162 AKEI 165 (168)
T ss_pred HHHH
Confidence 7665
No 156
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=97.75 E-value=3.1e-05 Score=59.07 Aligned_cols=23 Identities=22% Similarity=0.277 Sum_probs=20.7
Q ss_pred CcEEEeecCCCCCHHHHHHHHHH
Q psy7275 62 LKVVGFSSVSGEGTEELLQLIKL 84 (150)
Q Consensus 62 l~vv~VSA~TGeGideL~~~I~e 84 (150)
.+++.+||++|+|+++++..+.+
T Consensus 166 ~~~~~~Sa~~~~gv~e~~~~l~~ 188 (190)
T cd00879 166 IEVFMCSVVKRQGYGEAFRWLSQ 188 (190)
T ss_pred EEEEEeEecCCCChHHHHHHHHh
Confidence 47899999999999999998865
No 157
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=97.75 E-value=6.6e-05 Score=58.30 Aligned_cols=24 Identities=8% Similarity=0.027 Sum_probs=21.9
Q ss_pred cEEEeecCCCCCHHHHHHHHHHHH
Q psy7275 63 KVVGFSSVSGEGTEELLQLIKLAG 86 (150)
Q Consensus 63 ~vv~VSA~TGeGideL~~~I~e~~ 86 (150)
.++.+||++|.|++++|..+.+.+
T Consensus 149 ~~~E~SAk~~~nV~~~F~~~~~~~ 172 (176)
T cd04133 149 AYIECSSKTQQNVKAVFDAAIKVV 172 (176)
T ss_pred EEEECCCCcccCHHHHHHHHHHHH
Confidence 689999999999999999998765
No 158
>PLN03110 Rab GTPase; Provisional
Probab=97.74 E-value=0.00012 Score=58.18 Aligned_cols=60 Identities=20% Similarity=0.112 Sum_probs=40.5
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK 83 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~ 83 (150)
.++|+|+|+||+|+.......+ +. ...+ .. ...++++.+||++|.|++++++.|.
T Consensus 116 ~~~piiiv~nK~Dl~~~~~~~~-----~~-~~~l------------------~~-~~~~~~~e~SA~~g~~v~~lf~~l~ 170 (216)
T PLN03110 116 SNIVIMMAGNKSDLNHLRSVAE-----ED-GQAL------------------AE-KEGLSFLETSALEATNVEKAFQTIL 170 (216)
T ss_pred CCCeEEEEEEChhcccccCCCH-----HH-HHHH------------------HH-HcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 3689999999999854322100 00 0111 11 1257999999999999999999987
Q ss_pred HHHHH
Q psy7275 84 LAGED 88 (150)
Q Consensus 84 e~~~e 88 (150)
..+.+
T Consensus 171 ~~i~~ 175 (216)
T PLN03110 171 LEIYH 175 (216)
T ss_pred HHHHH
Confidence 76644
No 159
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=97.73 E-value=4.6e-05 Score=57.65 Aligned_cols=24 Identities=13% Similarity=0.025 Sum_probs=21.3
Q ss_pred CCcEEEeecCCCCCHHHHHHHHHH
Q psy7275 61 TLKVVGFSSVSGEGTEELLQLIKL 84 (150)
Q Consensus 61 ~l~vv~VSA~TGeGideL~~~I~e 84 (150)
...++.+||++|.|++++|..+.+
T Consensus 133 ~~~~~e~SAk~~~~i~~~f~~~~~ 156 (158)
T cd04103 133 RCSYYETCATYGLNVERVFQEAAQ 156 (158)
T ss_pred CCcEEEEecCCCCCHHHHHHHHHh
Confidence 468999999999999999998864
No 160
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=97.73 E-value=0.0001 Score=53.54 Aligned_cols=57 Identities=18% Similarity=0.163 Sum_probs=38.1
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK 83 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~ 83 (150)
...|+++|.||+|+...... +.+ .+.. + ... ...+++.+||++|.|++++++.|.
T Consensus 103 ~~~p~ivv~nK~D~~~~~~~-----~~~---~~~~--------~-------~~~--~~~~~~~~S~~~~~~i~~l~~~l~ 157 (160)
T cd00876 103 EDIPIVLVGNKCDLENERQV-----SKE---EGKA--------L-------AKE--WGCPFIETSAKDNINIDEVFKLLV 157 (160)
T ss_pred CCCcEEEEEECCccccccee-----cHH---HHHH--------H-------HHH--cCCcEEEeccCCCCCHHHHHHHHH
Confidence 46899999999998753221 011 1110 0 001 126899999999999999999987
Q ss_pred HH
Q psy7275 84 LA 85 (150)
Q Consensus 84 e~ 85 (150)
..
T Consensus 158 ~~ 159 (160)
T cd00876 158 RE 159 (160)
T ss_pred hh
Confidence 53
No 161
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=97.73 E-value=0.00013 Score=57.97 Aligned_cols=58 Identities=12% Similarity=0.067 Sum_probs=40.5
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK 83 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~ 83 (150)
.++|+|+|.||+|+...... .+. +. +. . ..++.++.+||++|+|++++|..|.
T Consensus 98 ~~~piilvgNK~Dl~~~~v~------~~~----~~--------~~--------~-~~~~~~~e~SAk~~~~v~~~F~~l~ 150 (200)
T smart00176 98 ENIPIVLCGNKVDVKDRKVK------AKS----IT--------FH--------R-KKNLQYYDISAKSNYNFEKPFLWLA 150 (200)
T ss_pred CCCCEEEEEECcccccccCC------HHH----HH--------HH--------H-HcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 46899999999998542210 011 00 00 0 1357899999999999999999998
Q ss_pred HHHHH
Q psy7275 84 LAGED 88 (150)
Q Consensus 84 e~~~e 88 (150)
..+.+
T Consensus 151 ~~i~~ 155 (200)
T smart00176 151 RKLIG 155 (200)
T ss_pred HHHHh
Confidence 77644
No 162
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=97.72 E-value=5.8e-05 Score=58.26 Aligned_cols=60 Identities=15% Similarity=0.097 Sum_probs=38.0
Q ss_pred CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHh-hcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275 5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEF-YSTLKVVGFSSVSGEGTEELLQLIK 83 (150)
Q Consensus 5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~ef-y~~l~vv~VSA~TGeGideL~~~I~ 83 (150)
+.|+|+|+||+|+...... +.+...+. ++.+ .....++.+||+||.|++++++.|.
T Consensus 118 ~~piilv~NK~Dl~~~~~~-------~~i~~~l~----------------~~~~~~~~~~~~~~Sa~tg~gv~e~~~~l~ 174 (182)
T PTZ00133 118 DAVLLVFANKQDLPNAMST-------TEVTEKLG----------------LHSVRQRNWYIQGCCATTAQGLYEGLDWLS 174 (182)
T ss_pred CCCEEEEEeCCCCCCCCCH-------HHHHHHhC----------------CCcccCCcEEEEeeeCCCCCCHHHHHHHHH
Confidence 5799999999998543211 11112211 0001 1123566899999999999999998
Q ss_pred HHHH
Q psy7275 84 LAGE 87 (150)
Q Consensus 84 e~~~ 87 (150)
+.+.
T Consensus 175 ~~i~ 178 (182)
T PTZ00133 175 ANIK 178 (182)
T ss_pred HHHH
Confidence 7553
No 163
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=97.72 E-value=0.00011 Score=63.95 Aligned_cols=63 Identities=22% Similarity=0.215 Sum_probs=41.7
Q ss_pred CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHH
Q psy7275 5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKL 84 (150)
Q Consensus 5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e 84 (150)
..|.|+|+||+|+...+. .++.+..++. +.......++|||.|++|+++|...+.+
T Consensus 275 ~K~~ivv~NKiD~~~~~e------~~~~~~~~l~------------------~~~~~~~~~~ISa~t~~g~~~L~~~~~~ 330 (369)
T COG0536 275 EKPRIVVLNKIDLPLDEE------ELEELKKALA------------------EALGWEVFYLISALTREGLDELLRALAE 330 (369)
T ss_pred cCceEEEEeccCCCcCHH------HHHHHHHHHH------------------HhcCCCcceeeehhcccCHHHHHHHHHH
Confidence 459999999999654432 1223333332 1111223333999999999999999999
Q ss_pred HHHHHHh
Q psy7275 85 AGEDYEK 91 (150)
Q Consensus 85 ~~~ey~~ 91 (150)
.++++..
T Consensus 331 ~l~~~~~ 337 (369)
T COG0536 331 LLEETKA 337 (369)
T ss_pred HHHHhhh
Confidence 8877653
No 164
>KOG1489|consensus
Probab=97.71 E-value=4.4e-05 Score=66.09 Aligned_cols=54 Identities=30% Similarity=0.369 Sum_probs=36.4
Q ss_pred CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHH
Q psy7275 5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKL 84 (150)
Q Consensus 5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e 84 (150)
..|.++|.||+|+.+.+. + + .++|.+. ..+..+++|||++|+|+.+|+..+.+
T Consensus 312 ~rp~liVaNKiD~~eae~------~---~----------l~~L~~~--------lq~~~V~pvsA~~~egl~~ll~~lr~ 364 (366)
T KOG1489|consen 312 DRPALIVANKIDLPEAEK------N---L----------LSSLAKR--------LQNPHVVPVSAKSGEGLEELLNGLRE 364 (366)
T ss_pred cCceEEEEeccCchhHHH------H---H----------HHHHHHH--------cCCCcEEEeeeccccchHHHHHHHhh
Confidence 459999999999853221 0 1 1111111 12335999999999999999998865
Q ss_pred H
Q psy7275 85 A 85 (150)
Q Consensus 85 ~ 85 (150)
.
T Consensus 365 ~ 365 (366)
T KOG1489|consen 365 L 365 (366)
T ss_pred c
Confidence 3
No 165
>COG1160 Predicted GTPases [General function prediction only]
Probab=97.71 E-value=0.00012 Score=65.53 Aligned_cols=71 Identities=25% Similarity=0.281 Sum_probs=50.5
Q ss_pred CCCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHH
Q psy7275 3 DTGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLI 82 (150)
Q Consensus 3 k~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I 82 (150)
+.+.|.|+|+||.|+...+.. -| +.+...+.. .-.|....++++|||.+|.|++.+++++
T Consensus 287 ~~g~~~vIvvNKWDl~~~~~~--~~---~~~k~~i~~---------------~l~~l~~a~i~~iSA~~~~~i~~l~~~i 346 (444)
T COG1160 287 EAGRGIVIVVNKWDLVEEDEA--TM---EEFKKKLRR---------------KLPFLDFAPIVFISALTGQGLDKLFEAI 346 (444)
T ss_pred HcCCCeEEEEEccccCCchhh--HH---HHHHHHHHH---------------HhccccCCeEEEEEecCCCChHHHHHHH
Confidence 567899999999999876321 11 122222221 1134445699999999999999999999
Q ss_pred HHHHHHHHhhh
Q psy7275 83 KLAGEDYEKNY 93 (150)
Q Consensus 83 ~e~~~ey~~~y 93 (150)
.++.+.+..--
T Consensus 347 ~~~~~~~~~ri 357 (444)
T COG1160 347 KEIYECATRRI 357 (444)
T ss_pred HHHHHHhcccc
Confidence 99998886544
No 166
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=97.71 E-value=0.0001 Score=57.07 Aligned_cols=61 Identities=15% Similarity=0.083 Sum_probs=33.7
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQL 81 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~ 81 (150)
.++|+|+|+||+|+...... .-. +.+.+.+. .+.... + ..+.+++++||++|.|++++...
T Consensus 116 ~~~p~iiv~NK~Dl~~~~~~-~~~---~~~~~~~~-----------~~~~~~-~-~~~~~iv~~Sa~~g~~~~~~~~~ 176 (194)
T cd01891 116 LGLKPIVVINKIDRPDARPE-EVV---DEVFDLFI-----------ELGATE-E-QLDFPVLYASAKNGWASLNLEDP 176 (194)
T ss_pred cCCCEEEEEECCCCCCCCHH-HHH---HHHHHHHH-----------HhCCcc-c-cCccCEEEeehhccccccccccc
Confidence 47899999999999654321 001 11111100 000000 0 11468999999999998666443
No 167
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=97.70 E-value=7e-05 Score=65.68 Aligned_cols=59 Identities=17% Similarity=0.281 Sum_probs=37.9
Q ss_pred CEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHHH
Q psy7275 7 PYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKLA 85 (150)
Q Consensus 7 P~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e~ 85 (150)
|+|+|+||+|+.+.+...+ .++.+.+.+. . .+....+++++||++|+|+++|++.|...
T Consensus 141 ~iiVVlNK~Dl~~~~~~~~---~~~~i~~~l~-----------~------~~~~~~~ii~vSA~~g~gI~~L~~~L~~~ 199 (411)
T PRK04000 141 NIVIVQNKIDLVSKERALE---NYEQIKEFVK-----------G------TVAENAPIIPVSALHKVNIDALIEAIEEE 199 (411)
T ss_pred cEEEEEEeeccccchhHHH---HHHHHHHHhc-----------c------ccCCCCeEEEEECCCCcCHHHHHHHHHHh
Confidence 6899999999976443211 1111111111 0 01234689999999999999999988754
No 168
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=97.70 E-value=0.00015 Score=57.51 Aligned_cols=29 Identities=21% Similarity=0.290 Sum_probs=24.5
Q ss_pred CCcEEEeecCCCCCHHHHHHHHHHHHHHH
Q psy7275 61 TLKVVGFSSVSGEGTEELLQLIKLAGEDY 89 (150)
Q Consensus 61 ~l~vv~VSA~TGeGideL~~~I~e~~~ey 89 (150)
+..++.+||++|.|++++++.|.+.+.+.
T Consensus 140 ~~~~~e~Sak~g~~v~e~f~~l~~~~~~~ 168 (211)
T cd04111 140 GMKYIETSARTGDNVEEAFELLTQEIYER 168 (211)
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 37899999999999999999998765443
No 169
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=97.69 E-value=0.00019 Score=54.93 Aligned_cols=26 Identities=15% Similarity=0.043 Sum_probs=23.2
Q ss_pred CCcEEEeecCCCCCHHHHHHHHHHHH
Q psy7275 61 TLKVVGFSSVSGEGTEELLQLIKLAG 86 (150)
Q Consensus 61 ~l~vv~VSA~TGeGideL~~~I~e~~ 86 (150)
+++++.+||++|.|+++++..+.+.+
T Consensus 136 ~~~~~evSa~~~~~i~~~f~~l~~~~ 161 (188)
T cd04125 136 NIPFFETSAKQSINVEEAFILLVKLI 161 (188)
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 45899999999999999999988765
No 170
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=97.69 E-value=0.00011 Score=54.59 Aligned_cols=58 Identities=14% Similarity=0.137 Sum_probs=37.5
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCC-CCHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSG-EGTEELLQLI 82 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TG-eGideL~~~I 82 (150)
.++|+|+|.||+|+...... - .+ ++.. + ..++ +.+++.+||++| .|++++|..+
T Consensus 105 ~~~piilv~nK~Dl~~~~~v---~--~~---~~~~--------~-------~~~~--~~~~~e~Sa~~~~~~v~~~f~~l 159 (165)
T cd04146 105 REIPVILVGNKADLLHYRQV---S--TE---EGEK--------L-------ASEL--GCLFFEVSAAEDYDGVHSVFHEL 159 (165)
T ss_pred CCCCEEEEEECCchHHhCcc---C--HH---HHHH--------H-------HHHc--CCEEEEeCCCCCchhHHHHHHHH
Confidence 47899999999998532211 0 00 0000 0 0111 357899999999 5999999998
Q ss_pred HHHH
Q psy7275 83 KLAG 86 (150)
Q Consensus 83 ~e~~ 86 (150)
.+.+
T Consensus 160 ~~~~ 163 (165)
T cd04146 160 CREV 163 (165)
T ss_pred HHHH
Confidence 7654
No 171
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=97.69 E-value=0.00011 Score=55.50 Aligned_cols=22 Identities=14% Similarity=0.256 Sum_probs=20.0
Q ss_pred cEEEeecCCCCCHHHHHHHHHH
Q psy7275 63 KVVGFSSVSGEGTEELLQLIKL 84 (150)
Q Consensus 63 ~vv~VSA~TGeGideL~~~I~e 84 (150)
+++.+||++|.|++++++.+.-
T Consensus 150 ~~~e~Sa~~~~~v~~lf~~~~~ 171 (173)
T cd04130 150 EYIECSALTQKNLKEVFDTAIL 171 (173)
T ss_pred eEEEEeCCCCCCHHHHHHHHHh
Confidence 8999999999999999988753
No 172
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=97.67 E-value=7.2e-05 Score=60.63 Aligned_cols=55 Identities=22% Similarity=0.240 Sum_probs=38.8
Q ss_pred EEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHHH
Q psy7275 8 YTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKLA 85 (150)
Q Consensus 8 ~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e~ 85 (150)
=|+|+||+|+.+.-.+ |.+.+.+.. .+..+..+++.+|++||+|+++++..+...
T Consensus 145 DllVInK~DLa~~v~~-----dlevm~~da------------------~~~np~~~ii~~n~ktg~G~~~~~~~i~~~ 199 (202)
T COG0378 145 DLLVINKTDLAPYVGA-----DLEVMARDA------------------KEVNPEAPIIFTNLKTGEGLDEWLRFIEPQ 199 (202)
T ss_pred eEEEEehHHhHHHhCc-----cHHHHHHHH------------------HHhCCCCCEEEEeCCCCcCHHHHHHHHHhh
Confidence 3789999999764322 222222222 234678899999999999999998877653
No 173
>KOG1145|consensus
Probab=97.65 E-value=0.00014 Score=66.95 Aligned_cols=65 Identities=22% Similarity=0.296 Sum_probs=47.3
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK 83 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~ 83 (150)
...|+|+++||||..+.+. +.....|. ++.++++++..+.++|+|||+||+|++.|.++|.
T Consensus 252 A~VpiVvAinKiDkp~a~p--------ekv~~eL~-----------~~gi~~E~~GGdVQvipiSAl~g~nl~~L~eail 312 (683)
T KOG1145|consen 252 ANVPIVVAINKIDKPGANP--------EKVKRELL-----------SQGIVVEDLGGDVQVIPISALTGENLDLLEEAIL 312 (683)
T ss_pred cCCCEEEEEeccCCCCCCH--------HHHHHHHH-----------HcCccHHHcCCceeEEEeecccCCChHHHHHHHH
Confidence 4679999999999765432 22222221 2234677888889999999999999999999987
Q ss_pred HHHH
Q psy7275 84 LAGE 87 (150)
Q Consensus 84 e~~~ 87 (150)
-.++
T Consensus 313 l~Ae 316 (683)
T KOG1145|consen 313 LLAE 316 (683)
T ss_pred HHHH
Confidence 5543
No 174
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=97.64 E-value=0.00021 Score=56.64 Aligned_cols=53 Identities=15% Similarity=0.303 Sum_probs=31.2
Q ss_pred CCCCC-EEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHh-h--cCCcEEEeecCCCCCH
Q psy7275 3 DTGFP-YTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEF-Y--STLKVVGFSSVSGEGT 75 (150)
Q Consensus 3 k~~lP-~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~ef-y--~~l~vv~VSA~TGeGi 75 (150)
+.++| +|+|+||+|+...+...+++ .+.+. . .+..+ | .++++++|||++|.++
T Consensus 115 ~~~~~~iIvviNK~D~~~~~~~~~~~------~~~i~-------~-------~l~~~g~~~~~v~iipiSa~~g~n~ 171 (195)
T cd01884 115 QVGVPYIVVFLNKADMVDDEELLELV------EMEVR-------E-------LLSKYGFDGDNTPIVRGSALKALEG 171 (195)
T ss_pred HcCCCcEEEEEeCCCCCCcHHHHHHH------HHHHH-------H-------HHHHhcccccCCeEEEeeCccccCC
Confidence 35677 78999999987433222211 11111 0 11111 1 2479999999999985
No 175
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=97.62 E-value=0.00011 Score=69.72 Aligned_cols=63 Identities=27% Similarity=0.357 Sum_probs=40.9
Q ss_pred CCCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHH
Q psy7275 3 DTGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLI 82 (150)
Q Consensus 3 k~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I 82 (150)
..++|+|+|+||+|+.+.+. +.....+.. .....+++....++++|||++|+|+++|++.|
T Consensus 387 ~~~vPiIVviNKiDl~~a~~--------e~V~~eL~~-----------~~~~~e~~g~~vp~vpvSAktG~GI~eLle~I 447 (787)
T PRK05306 387 AAGVPIIVAINKIDKPGANP--------DRVKQELSE-----------YGLVPEEWGGDTIFVPVSAKTGEGIDELLEAI 447 (787)
T ss_pred hcCCcEEEEEECccccccCH--------HHHHHHHHH-----------hcccHHHhCCCceEEEEeCCCCCCchHHHHhh
Confidence 35789999999999965332 111111110 00012233345789999999999999999988
Q ss_pred HH
Q psy7275 83 KL 84 (150)
Q Consensus 83 ~e 84 (150)
..
T Consensus 448 ~~ 449 (787)
T PRK05306 448 LL 449 (787)
T ss_pred hh
Confidence 64
No 176
>PRK11058 GTPase HflX; Provisional
Probab=97.61 E-value=0.00016 Score=64.09 Aligned_cols=24 Identities=25% Similarity=0.207 Sum_probs=21.7
Q ss_pred EEEeecCCCCCHHHHHHHHHHHHH
Q psy7275 64 VVGFSSVSGEGTEELLQLIKLAGE 87 (150)
Q Consensus 64 vv~VSA~TGeGideL~~~I~e~~~ 87 (150)
++.|||++|+|+++|++.|.+.+.
T Consensus 339 ~v~ISAktG~GIdeL~e~I~~~l~ 362 (426)
T PRK11058 339 RVWLSAQTGAGIPLLFQALTERLS 362 (426)
T ss_pred eEEEeCCCCCCHHHHHHHHHHHhh
Confidence 588999999999999999988764
No 177
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=97.61 E-value=0.00042 Score=58.34 Aligned_cols=41 Identities=27% Similarity=0.313 Sum_probs=30.4
Q ss_pred CcEEEeecCCCCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q psy7275 62 LKVVGFSSVSGEGTEELLQLIKLAGEDYEKNYRVEWIRLRDEK 104 (150)
Q Consensus 62 l~vv~VSA~TGeGideL~~~I~e~~~ey~~~y~pe~e~~~~~~ 104 (150)
.+++.+||.+|+|+++|.++|.+..+-..+. .+++++|.++
T Consensus 205 ppV~~tsA~~~~Gi~eL~~~i~~~~~~l~~s--g~~~~rr~~q 245 (266)
T PF03308_consen 205 PPVLKTSALEGEGIDELWEAIDEHRDYLKES--GELEERRREQ 245 (266)
T ss_dssp -EEEEEBTTTTBSHHHHHHHHHHHHHHHHHT--THHHHHHHHH
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHHHHHc--chHHHHHHHH
Confidence 5999999999999999999999887665543 2344444433
No 178
>PLN03118 Rab family protein; Provisional
Probab=97.60 E-value=0.00029 Score=55.25 Aligned_cols=58 Identities=16% Similarity=0.082 Sum_probs=38.8
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK 83 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~ 83 (150)
.++|+|+|.||+|+....... .+ +... +. .+ ....++.+||++|.|+++++..|.
T Consensus 119 ~~~~~ilv~NK~Dl~~~~~i~-----~~---~~~~--------~~-------~~--~~~~~~e~SAk~~~~v~~l~~~l~ 173 (211)
T PLN03118 119 QDCVKMLVGNKVDRESERDVS-----RE---EGMA--------LA-------KE--HGCLFLECSAKTRENVEQCFEELA 173 (211)
T ss_pred CCCCEEEEEECccccccCccC-----HH---HHHH--------HH-------HH--cCCEEEEEeCCCCCCHHHHHHHHH
Confidence 357999999999986432210 00 0000 00 01 135789999999999999999998
Q ss_pred HHH
Q psy7275 84 LAG 86 (150)
Q Consensus 84 e~~ 86 (150)
..+
T Consensus 174 ~~~ 176 (211)
T PLN03118 174 LKI 176 (211)
T ss_pred HHH
Confidence 776
No 179
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=97.58 E-value=0.00018 Score=53.80 Aligned_cols=57 Identities=11% Similarity=0.084 Sum_probs=37.7
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK 83 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~ 83 (150)
.++|+|+|.||.|+........ .++.. + .+-+ +.+++.+||++|.|+++++..|.
T Consensus 104 ~~~~iilvgnK~Dl~~~~~v~~--------~~~~~--------~--------~~~~-~~~~~e~Sa~~~~~v~~~f~~l~ 158 (161)
T cd04117 104 EGVQKILIGNKADEEQKRQVGD--------EQGNK--------L--------AKEY-GMDFFETSACTNSNIKESFTRLT 158 (161)
T ss_pred CCCeEEEEEECcccccccCCCH--------HHHHH--------H--------HHHc-CCEEEEEeCCCCCCHHHHHHHHH
Confidence 3689999999999864332100 01100 0 0111 36789999999999999999887
Q ss_pred HH
Q psy7275 84 LA 85 (150)
Q Consensus 84 e~ 85 (150)
+.
T Consensus 159 ~~ 160 (161)
T cd04117 159 EL 160 (161)
T ss_pred hh
Confidence 53
No 180
>CHL00189 infB translation initiation factor 2; Provisional
Probab=97.55 E-value=0.00018 Score=67.95 Aligned_cols=64 Identities=20% Similarity=0.275 Sum_probs=41.3
Q ss_pred CCCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHH
Q psy7275 3 DTGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLI 82 (150)
Q Consensus 3 k~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I 82 (150)
..++|+|+|+||+|+.+.+. +.....+... .+..+++....++++|||++|.|+++|++.|
T Consensus 345 ~~~iPiIVViNKiDl~~~~~--------e~v~~eL~~~-----------~ll~e~~g~~vpvv~VSAktG~GIdeLle~I 405 (742)
T CHL00189 345 AANVPIIVAINKIDKANANT--------ERIKQQLAKY-----------NLIPEKWGGDTPMIPISASQGTNIDKLLETI 405 (742)
T ss_pred hcCceEEEEEECCCccccCH--------HHHHHHHHHh-----------ccchHhhCCCceEEEEECCCCCCHHHHHHhh
Confidence 35789999999999865432 1111221100 0011223334689999999999999999988
Q ss_pred HHH
Q psy7275 83 KLA 85 (150)
Q Consensus 83 ~e~ 85 (150)
...
T Consensus 406 ~~l 408 (742)
T CHL00189 406 LLL 408 (742)
T ss_pred hhh
Confidence 665
No 181
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=97.54 E-value=0.00013 Score=67.92 Aligned_cols=77 Identities=27% Similarity=0.238 Sum_probs=55.1
Q ss_pred CCCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHH
Q psy7275 3 DTGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLI 82 (150)
Q Consensus 3 k~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I 82 (150)
..++|+|+++|++|.....-. -=|.+.+++.+ +.++|++||++|.|+++++.++
T Consensus 106 E~g~p~ilaLNm~D~A~~~Gi---~ID~~~L~~~L-----------------------GvPVv~tvA~~g~G~~~l~~~i 159 (653)
T COG0370 106 ELGIPMILALNMIDEAKKRGI---RIDIEKLSKLL-----------------------GVPVVPTVAKRGEGLEELKRAI 159 (653)
T ss_pred HcCCCeEEEeccHhhHHhcCC---cccHHHHHHHh-----------------------CCCEEEEEeecCCCHHHHHHHH
Confidence 468899999999997543221 11333333322 5899999999999999999999
Q ss_pred HHHHH----HHHhhhHHHHHHHHHHHH
Q psy7275 83 KLAGE----DYEKNYRVEWIRLRDEKA 105 (150)
Q Consensus 83 ~e~~~----ey~~~y~pe~e~~~~~~~ 105 (150)
.+..+ .+.-.|.+++|+..++-+
T Consensus 160 ~~~~~~~~~~~~~~y~~~ie~~i~~l~ 186 (653)
T COG0370 160 IELAESKTTPREVDYGEEIEEEIKELE 186 (653)
T ss_pred HHhccccccccccccchHHHHHHHHHH
Confidence 87553 344677777777766554
No 182
>PRK01889 GTPase RsgA; Reviewed
Probab=97.54 E-value=0.00023 Score=61.51 Aligned_cols=54 Identities=17% Similarity=0.306 Sum_probs=36.4
Q ss_pred CCCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHH
Q psy7275 3 DTGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLI 82 (150)
Q Consensus 3 k~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I 82 (150)
..++|.|+|+||+|+.+... ++...+ . .+..+.+++.|||.+|.|+++|...|
T Consensus 140 ~~~i~piIVLNK~DL~~~~~--~~~~~~---~----------------------~~~~g~~Vi~vSa~~g~gl~~L~~~L 192 (356)
T PRK01889 140 ESGAEPVIVLTKADLCEDAE--EKIAEV---E----------------------ALAPGVPVLAVSALDGEGLDVLAAWL 192 (356)
T ss_pred HcCCCEEEEEEChhcCCCHH--HHHHHH---H----------------------HhCCCCcEEEEECCCCccHHHHHHHh
Confidence 46789999999999976421 121111 0 11224588888999999988888887
Q ss_pred H
Q psy7275 83 K 83 (150)
Q Consensus 83 ~ 83 (150)
.
T Consensus 193 ~ 193 (356)
T PRK01889 193 S 193 (356)
T ss_pred h
Confidence 5
No 183
>PLN03108 Rab family protein; Provisional
Probab=97.53 E-value=0.00046 Score=54.49 Aligned_cols=57 Identities=14% Similarity=0.041 Sum_probs=37.5
Q ss_pred CCCCEEEeeecCCCCCchhh-HHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYA-IEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLI 82 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~-~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I 82 (150)
..+|+|+|+||+|+...... .+.. + +. ..+ .+++++.+||++|.|++++|..+
T Consensus 110 ~~~piiiv~nK~Dl~~~~~~~~~~~---~---~~------------------~~~--~~~~~~e~Sa~~~~~v~e~f~~l 163 (210)
T PLN03108 110 ANMTIMLIGNKCDLAHRRAVSTEEG---E---QF------------------AKE--HGLIFMEASAKTAQNVEEAFIKT 163 (210)
T ss_pred CCCcEEEEEECccCccccCCCHHHH---H---HH------------------HHH--cCCEEEEEeCCCCCCHHHHHHHH
Confidence 36899999999998653221 0100 0 00 011 14689999999999999998777
Q ss_pred HHHH
Q psy7275 83 KLAG 86 (150)
Q Consensus 83 ~e~~ 86 (150)
...+
T Consensus 164 ~~~~ 167 (210)
T PLN03108 164 AAKI 167 (210)
T ss_pred HHHH
Confidence 6443
No 184
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=97.53 E-value=0.00025 Score=57.97 Aligned_cols=24 Identities=13% Similarity=0.155 Sum_probs=21.1
Q ss_pred cEEEeecCCCC-CHHHHHHHHHHHH
Q psy7275 63 KVVGFSSVSGE-GTEELLQLIKLAG 86 (150)
Q Consensus 63 ~vv~VSA~TGe-GideL~~~I~e~~ 86 (150)
.++.+||+||+ |++++|..+....
T Consensus 163 ~~~EtSAktg~~~V~e~F~~~~~~~ 187 (232)
T cd04174 163 VYLECSAFTSEKSIHSIFRSASLLC 187 (232)
T ss_pred EEEEccCCcCCcCHHHHHHHHHHHH
Confidence 57899999998 8999999987755
No 185
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=97.53 E-value=0.0002 Score=55.08 Aligned_cols=58 Identities=24% Similarity=0.290 Sum_probs=40.2
Q ss_pred CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhh--cCCcEEEeecCCCCCHHHHHHHH
Q psy7275 5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFY--STLKVVGFSSVSGEGTEELLQLI 82 (150)
Q Consensus 5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy--~~l~vv~VSA~TGeGideL~~~I 82 (150)
+.|+++++||.|+.++... +.+.+.+. +++.. ....++.+||.+|+|+.+.++.|
T Consensus 115 ~~piLIl~NK~D~~~~~~~-------~~i~~~l~----------------l~~l~~~~~~~v~~~sa~~g~Gv~e~l~WL 171 (175)
T PF00025_consen 115 DIPILILANKQDLPDAMSE-------EEIKEYLG----------------LEKLKNKRPWSVFSCSAKTGEGVDEGLEWL 171 (175)
T ss_dssp TSEEEEEEESTTSTTSSTH-------HHHHHHTT----------------GGGTTSSSCEEEEEEBTTTTBTHHHHHHHH
T ss_pred cceEEEEeccccccCcchh-------hHHHhhhh----------------hhhcccCCceEEEeeeccCCcCHHHHHHHH
Confidence 5799999999998764321 11222221 11121 35689999999999999999998
Q ss_pred HHH
Q psy7275 83 KLA 85 (150)
Q Consensus 83 ~e~ 85 (150)
.+.
T Consensus 172 ~~~ 174 (175)
T PF00025_consen 172 IEQ 174 (175)
T ss_dssp HHH
T ss_pred Hhc
Confidence 764
No 186
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.53 E-value=0.0002 Score=61.86 Aligned_cols=57 Identities=30% Similarity=0.447 Sum_probs=38.1
Q ss_pred CCCEEEeeecCCCCCchh----hHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHh-hcCCcEEEeecCCCCCHHHHH
Q psy7275 5 GFPYTELVVGIDIVNHKY----AIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEF-YSTLKVVGFSSVSGEGTEELL 79 (150)
Q Consensus 5 ~lP~IlV~NKiDl~~~~~----~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~ef-y~~l~vv~VSA~TGeGideL~ 79 (150)
..|+|+|+||+|+.+.+. ..+|+.++ . .++ +....++.+||++|.|+++|+
T Consensus 90 ~~piilV~NK~DLl~k~~~~~~~~~~l~~~------~------------------k~~g~~~~~i~~vSAk~g~gv~eL~ 145 (360)
T TIGR03597 90 GNPVLLVGNKIDLLPKSVNLSKIKEWMKKR------A------------------KELGLKPVDIILVSAKKGNGIDELL 145 (360)
T ss_pred CCCEEEEEEchhhCCCCCCHHHHHHHHHHH------H------------------HHcCCCcCcEEEecCCCCCCHHHHH
Confidence 569999999999975432 23343211 0 011 111258899999999999999
Q ss_pred HHHHHH
Q psy7275 80 QLIKLA 85 (150)
Q Consensus 80 ~~I~e~ 85 (150)
..|.+.
T Consensus 146 ~~l~~~ 151 (360)
T TIGR03597 146 DKIKKA 151 (360)
T ss_pred HHHHHH
Confidence 998653
No 187
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=97.52 E-value=0.0002 Score=55.80 Aligned_cols=24 Identities=17% Similarity=0.357 Sum_probs=21.4
Q ss_pred CcEEEeecCCCCC-HHHHHHHHHHH
Q psy7275 62 LKVVGFSSVSGEG-TEELLQLIKLA 85 (150)
Q Consensus 62 l~vv~VSA~TGeG-ideL~~~I~e~ 85 (150)
.+++.+||+||+| ++++|..+.++
T Consensus 154 ~~~~E~SAk~~~n~v~~~F~~~~~~ 178 (182)
T cd04172 154 ATYIECSALQSENSVRDIFHVATLA 178 (182)
T ss_pred CEEEECCcCCCCCCHHHHHHHHHHH
Confidence 4789999999998 99999988774
No 188
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=97.52 E-value=0.00012 Score=56.31 Aligned_cols=25 Identities=24% Similarity=0.147 Sum_probs=21.8
Q ss_pred CCcEEEeecCCCCCHHHHHHHHHHH
Q psy7275 61 TLKVVGFSSVSGEGTEELLQLIKLA 85 (150)
Q Consensus 61 ~l~vv~VSA~TGeGideL~~~I~e~ 85 (150)
...++++||++|+|++++++.|.+.
T Consensus 159 ~~~i~~~Sa~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 159 PLEVFMCSVVRRMGYGEGFKWLSQY 183 (184)
T ss_pred eeEEEEeecccCCChHHHHHHHHhh
Confidence 4579999999999999999998653
No 189
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=97.51 E-value=0.00015 Score=64.27 Aligned_cols=52 Identities=23% Similarity=0.208 Sum_probs=40.2
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK 83 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~ 83 (150)
.+.|+|+|+||+|+.+..... . ....+++.|||++|.|+++|++.|.
T Consensus 320 ~~~piiiV~NK~DL~~~~~~~-------------~--------------------~~~~~~i~iSAktg~GI~~L~~~L~ 366 (449)
T PRK05291 320 KDKPVIVVLNKADLTGEIDLE-------------E--------------------ENGKPVIRISAKTGEGIDELREAIK 366 (449)
T ss_pred CCCCcEEEEEhhhccccchhh-------------h--------------------ccCCceEEEEeeCCCCHHHHHHHHH
Confidence 367999999999996543210 0 1235789999999999999999999
Q ss_pred HHHHH
Q psy7275 84 LAGED 88 (150)
Q Consensus 84 e~~~e 88 (150)
+.+..
T Consensus 367 ~~l~~ 371 (449)
T PRK05291 367 ELAFG 371 (449)
T ss_pred HHHhh
Confidence 88754
No 190
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=97.50 E-value=0.00011 Score=58.52 Aligned_cols=54 Identities=17% Similarity=0.284 Sum_probs=31.3
Q ss_pred CCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHh-h--cCCcEEEeecCCCCCHH
Q psy7275 6 FPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEF-Y--STLKVVGFSSVSGEGTE 76 (150)
Q Consensus 6 lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~ef-y--~~l~vv~VSA~TGeGid 76 (150)
.|+|+|+||+|+..++...+ +++.+.+.+.. .+..+ + ...++++|||++|+|++
T Consensus 138 ~~iiivvNK~Dl~~~~~~~~---~~~~i~~~l~~--------------~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 138 KQLIVAVNKMDDVTVNWSEE---RYDEIKKELSP--------------FLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred CeEEEEEEccccccccccHH---HHHHHHHHHHH--------------HHHHcCCCcCCceEEEeecCcCCCCC
Confidence 47899999999975321111 12222222210 11121 1 13689999999999986
No 191
>COG1160 Predicted GTPases [General function prediction only]
Probab=97.49 E-value=0.00012 Score=65.35 Aligned_cols=56 Identities=25% Similarity=0.221 Sum_probs=42.3
Q ss_pred CCCCCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcC--CcEEEeecCCCCCHHHH
Q psy7275 1 MYDTGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYST--LKVVGFSSVSGEGTEEL 78 (150)
Q Consensus 1 lyk~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~--l~vv~VSA~TGeGideL 78 (150)
|++.+.|+|+|+||+|-...+.. ..|||+- -++++|||.-|.|+++|
T Consensus 108 Lr~~~kpviLvvNK~D~~~~e~~-------------------------------~~efyslG~g~~~~ISA~Hg~Gi~dL 156 (444)
T COG1160 108 LRRSKKPVILVVNKIDNLKAEEL-------------------------------AYEFYSLGFGEPVPISAEHGRGIGDL 156 (444)
T ss_pred HHhcCCCEEEEEEcccCchhhhh-------------------------------HHHHHhcCCCCceEeehhhccCHHHH
Confidence 45677899999999997532210 1244432 38999999999999999
Q ss_pred HHHHHHHHH
Q psy7275 79 LQLIKLAGE 87 (150)
Q Consensus 79 ~~~I~e~~~ 87 (150)
+++|.+.+.
T Consensus 157 ld~v~~~l~ 165 (444)
T COG1160 157 LDAVLELLP 165 (444)
T ss_pred HHHHHhhcC
Confidence 999998863
No 192
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=97.49 E-value=0.00019 Score=64.32 Aligned_cols=58 Identities=17% Similarity=0.137 Sum_probs=43.7
Q ss_pred CCCCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHH
Q psy7275 2 YDTGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQL 81 (150)
Q Consensus 2 yk~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~ 81 (150)
.+.+.|+|+|.||+|+.+..+.. .+ +.....+++.|||+||+|++.|.++
T Consensus 321 ~~~~~~~i~v~NK~DL~~~~~~~-----------~~-------------------~~~~~~~~i~iSa~t~~Gl~~L~~~ 370 (454)
T COG0486 321 LPKKKPIIVVLNKADLVSKIELE-----------SE-------------------KLANGDAIISISAKTGEGLDALREA 370 (454)
T ss_pred cccCCCEEEEEechhcccccccc-----------hh-------------------hccCCCceEEEEecCccCHHHHHHH
Confidence 35678999999999998765420 00 1123457999999999999999999
Q ss_pred HHHHHHHH
Q psy7275 82 IKLAGEDY 89 (150)
Q Consensus 82 I~e~~~ey 89 (150)
|......-
T Consensus 371 i~~~~~~~ 378 (454)
T COG0486 371 IKQLFGKG 378 (454)
T ss_pred HHHHHhhc
Confidence 99887544
No 193
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=97.48 E-value=0.00025 Score=54.79 Aligned_cols=24 Identities=13% Similarity=0.243 Sum_probs=20.9
Q ss_pred CcEEEeecCCCCC-HHHHHHHHHHH
Q psy7275 62 LKVVGFSSVSGEG-TEELLQLIKLA 85 (150)
Q Consensus 62 l~vv~VSA~TGeG-ideL~~~I~e~ 85 (150)
..++.+||++|+| ++++|..+.++
T Consensus 150 ~~~~E~SA~~~~~~v~~~F~~~~~~ 174 (178)
T cd04131 150 EIYLECSAFTSEKSVRDIFHVATMA 174 (178)
T ss_pred CEEEECccCcCCcCHHHHHHHHHHH
Confidence 3789999999995 99999988874
No 194
>PRK13796 GTPase YqeH; Provisional
Probab=97.46 E-value=0.00026 Score=61.24 Aligned_cols=57 Identities=23% Similarity=0.349 Sum_probs=38.6
Q ss_pred CCCEEEeeecCCCCCchh----hHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHh-hcCCcEEEeecCCCCCHHHHH
Q psy7275 5 GFPYTELVVGIDIVNHKY----AIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEF-YSTLKVVGFSSVSGEGTEELL 79 (150)
Q Consensus 5 ~lP~IlV~NKiDl~~~~~----~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~ef-y~~l~vv~VSA~TGeGideL~ 79 (150)
+.|+|+|+||+|+.+.+. ..+|+.++. . .+ +....++.+||++|.|+++|+
T Consensus 96 ~kpviLViNK~DLl~~~~~~~~i~~~l~~~~---k---------------------~~g~~~~~v~~vSAk~g~gI~eL~ 151 (365)
T PRK13796 96 NNPVLLVGNKADLLPKSVKKNKVKNWLRQEA---K---------------------ELGLRPVDVVLISAQKGHGIDELL 151 (365)
T ss_pred CCCEEEEEEchhhCCCccCHHHHHHHHHHHH---H---------------------hcCCCcCcEEEEECCCCCCHHHHH
Confidence 579999999999975432 233442211 0 00 112368999999999999999
Q ss_pred HHHHHH
Q psy7275 80 QLIKLA 85 (150)
Q Consensus 80 ~~I~e~ 85 (150)
+.|.+.
T Consensus 152 ~~I~~~ 157 (365)
T PRK13796 152 EAIEKY 157 (365)
T ss_pred HHHHHh
Confidence 998653
No 195
>PRK03003 GTP-binding protein Der; Reviewed
Probab=97.45 E-value=0.00022 Score=63.43 Aligned_cols=55 Identities=18% Similarity=0.145 Sum_probs=36.9
Q ss_pred CCCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHH
Q psy7275 3 DTGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLI 82 (150)
Q Consensus 3 k~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I 82 (150)
+.+.|+|+|+||+|+...+.. ...+. ++ .+ -..++|||++|.|+++|++.|
T Consensus 144 ~~~~piilV~NK~Dl~~~~~~------~~~~~---------------~~-----g~---~~~~~iSA~~g~gi~eL~~~i 194 (472)
T PRK03003 144 RSGKPVILAANKVDDERGEAD------AAALW---------------SL-----GL---GEPHPVSALHGRGVGDLLDAV 194 (472)
T ss_pred HcCCCEEEEEECccCCccchh------hHHHH---------------hc-----CC---CCeEEEEcCCCCCcHHHHHHH
Confidence 357899999999998543210 00000 00 01 145799999999999999998
Q ss_pred HHHH
Q psy7275 83 KLAG 86 (150)
Q Consensus 83 ~e~~ 86 (150)
...+
T Consensus 195 ~~~l 198 (472)
T PRK03003 195 LAAL 198 (472)
T ss_pred Hhhc
Confidence 7665
No 196
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=97.43 E-value=0.00024 Score=64.48 Aligned_cols=59 Identities=19% Similarity=0.177 Sum_probs=40.5
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK 83 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~ 83 (150)
.++.+|.|+||+||..++. +.....++.-.+ ...-..+.+||+||.|+++++++|.
T Consensus 127 ~~LeIiPViNKIDLP~Adp--------ervk~eIe~~iG----------------id~~dav~~SAKtG~gI~~iLe~Iv 182 (603)
T COG0481 127 NNLEIIPVLNKIDLPAADP--------ERVKQEIEDIIG----------------IDASDAVLVSAKTGIGIEDVLEAIV 182 (603)
T ss_pred cCcEEEEeeecccCCCCCH--------HHHHHHHHHHhC----------------CCcchheeEecccCCCHHHHHHHHH
Confidence 4678999999999976543 222222221000 1123789999999999999999998
Q ss_pred HHH
Q psy7275 84 LAG 86 (150)
Q Consensus 84 e~~ 86 (150)
+.+
T Consensus 183 ~~i 185 (603)
T COG0481 183 EKI 185 (603)
T ss_pred hhC
Confidence 765
No 197
>PRK12736 elongation factor Tu; Reviewed
Probab=97.41 E-value=0.0003 Score=61.22 Aligned_cols=19 Identities=21% Similarity=0.555 Sum_probs=14.5
Q ss_pred CCCCC-EEEeeecCCCCCch
Q psy7275 3 DTGFP-YTELVVGIDIVNHK 21 (150)
Q Consensus 3 k~~lP-~IlV~NKiDl~~~~ 21 (150)
..++| +|+|+||+|+.+.+
T Consensus 125 ~~g~~~~IvviNK~D~~~~~ 144 (394)
T PRK12736 125 QVGVPYLVVFLNKVDLVDDE 144 (394)
T ss_pred HcCCCEEEEEEEecCCcchH
Confidence 35788 67899999997543
No 198
>PRK05433 GTP-binding protein LepA; Provisional
Probab=97.38 E-value=0.00044 Score=63.69 Aligned_cols=57 Identities=19% Similarity=0.212 Sum_probs=38.4
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhh--cCCcEEEeecCCCCCHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFY--STLKVVGFSSVSGEGTEELLQL 81 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy--~~l~vv~VSA~TGeGideL~~~ 81 (150)
.++|+|+|+||+|+.+.... ...+.+. +.. ...+++++||++|.|+++|+++
T Consensus 125 ~~lpiIvViNKiDl~~a~~~--------~v~~ei~------------------~~lg~~~~~vi~iSAktG~GI~~Ll~~ 178 (600)
T PRK05433 125 NDLEIIPVLNKIDLPAADPE--------RVKQEIE------------------DVIGIDASDAVLVSAKTGIGIEEVLEA 178 (600)
T ss_pred CCCCEEEEEECCCCCcccHH--------HHHHHHH------------------HHhCCCcceEEEEecCCCCCHHHHHHH
Confidence 57899999999998653321 1111111 101 1125899999999999999999
Q ss_pred HHHHH
Q psy7275 82 IKLAG 86 (150)
Q Consensus 82 I~e~~ 86 (150)
|.+.+
T Consensus 179 I~~~l 183 (600)
T PRK05433 179 IVERI 183 (600)
T ss_pred HHHhC
Confidence 97654
No 199
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=97.35 E-value=0.00027 Score=61.12 Aligned_cols=53 Identities=25% Similarity=0.281 Sum_probs=39.0
Q ss_pred CCCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhh-cCC-cEEEeecCCCCCHHHHHH
Q psy7275 3 DTGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFY-STL-KVVGFSSVSGEGTEELLQ 80 (150)
Q Consensus 3 k~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy-~~l-~vv~VSA~TGeGideL~~ 80 (150)
+.+.|+|+|+||+|+.+.+... + +|+ .++ ++++|||.+|.|++++++
T Consensus 105 ~~~~piilVvNK~D~~~~~~~~---------~----------------------~~~~lg~~~~~~vSa~~g~gv~~ll~ 153 (429)
T TIGR03594 105 KSGKPVILVANKIDGKKEDAVA---------A----------------------EFYSLGFGEPIPISAEHGRGIGDLLD 153 (429)
T ss_pred HhCCCEEEEEECccCCcccccH---------H----------------------HHHhcCCCCeEEEeCCcCCChHHHHH
Confidence 4578999999999986543210 0 111 123 789999999999999999
Q ss_pred HHHHHH
Q psy7275 81 LIKLAG 86 (150)
Q Consensus 81 ~I~e~~ 86 (150)
.+....
T Consensus 154 ~i~~~l 159 (429)
T TIGR03594 154 AILELL 159 (429)
T ss_pred HHHHhc
Confidence 987665
No 200
>KOG0462|consensus
Probab=97.34 E-value=0.00033 Score=64.41 Aligned_cols=59 Identities=24% Similarity=0.273 Sum_probs=41.4
Q ss_pred CCCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhh-cCCcEEEeecCCCCCHHHHHHH
Q psy7275 3 DTGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFY-STLKVVGFSSVSGEGTEELLQL 81 (150)
Q Consensus 3 k~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy-~~l~vv~VSA~TGeGideL~~~ 81 (150)
..++-+|+|+||+|+.+++. +.....+. +-|- ..-+++.|||++|.|+++++++
T Consensus 175 e~~L~iIpVlNKIDlp~adp--------e~V~~q~~-----------------~lF~~~~~~~i~vSAK~G~~v~~lL~A 229 (650)
T KOG0462|consen 175 EAGLAIIPVLNKIDLPSADP--------ERVENQLF-----------------ELFDIPPAEVIYVSAKTGLNVEELLEA 229 (650)
T ss_pred HcCCeEEEeeeccCCCCCCH--------HHHHHHHH-----------------HHhcCCccceEEEEeccCccHHHHHHH
Confidence 46788999999999976543 11111111 1121 2349999999999999999999
Q ss_pred HHHHH
Q psy7275 82 IKLAG 86 (150)
Q Consensus 82 I~e~~ 86 (150)
|.+.+
T Consensus 230 II~rV 234 (650)
T KOG0462|consen 230 IIRRV 234 (650)
T ss_pred HHhhC
Confidence 98865
No 201
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=97.34 E-value=0.00032 Score=52.07 Aligned_cols=23 Identities=13% Similarity=0.183 Sum_probs=16.8
Q ss_pred CCCEEEeeecCCCCCchhhHHHh
Q psy7275 5 GFPYTELVVGIDIVNHKYAIEWM 27 (150)
Q Consensus 5 ~lP~IlV~NKiDl~~~~~~~ewm 27 (150)
+.|+|+|+||+|+.+.+...+|.
T Consensus 42 ~k~~iivlNK~DL~~~~~~~~~~ 64 (141)
T cd01857 42 RKKNILLLNKADLLTEEQRKAWA 64 (141)
T ss_pred CCcEEEEEechhcCCHHHHHHHH
Confidence 68999999999997644333333
No 202
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=97.34 E-value=0.00023 Score=53.83 Aligned_cols=58 Identities=22% Similarity=0.225 Sum_probs=37.6
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhh----cCCcEEEeecCCC------C
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFY----STLKVVGFSSVSG------E 73 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy----~~l~vv~VSA~TG------e 73 (150)
.+.|+++|.||+|+.+.....+.. +.+. ++++- ....++.+||++| .
T Consensus 99 ~~~piliv~NK~Dl~~~~~~~~i~-------~~~~----------------l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~ 155 (167)
T cd04161 99 SGKPILVLANKQDKKNALLGADVI-------EYLS----------------LEKLVNENKSLCHIEPCSAIEGLGKKIDP 155 (167)
T ss_pred cCCcEEEEEeCCCCcCCCCHHHHH-------HhcC----------------cccccCCCCceEEEEEeEceeCCCCcccc
Confidence 368999999999997654322211 1111 11111 1347888999999 8
Q ss_pred CHHHHHHHHHH
Q psy7275 74 GTEELLQLIKL 84 (150)
Q Consensus 74 GideL~~~I~e 84 (150)
|+++-++.|.+
T Consensus 156 g~~~~~~wl~~ 166 (167)
T cd04161 156 SIVEGLRWLLA 166 (167)
T ss_pred CHHHHHHHHhc
Confidence 99999988753
No 203
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=97.33 E-value=0.0005 Score=63.25 Aligned_cols=59 Identities=19% Similarity=0.234 Sum_probs=38.0
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK 83 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~ 83 (150)
.++|+|+|+||+|+.+.+. +...+.+.. .+ . +...+++.+||++|.|+++|++.|.
T Consensus 121 ~~ipiIiViNKiDl~~~~~--------~~~~~el~~----------~l-----g-~~~~~vi~vSAktG~GI~~Lle~I~ 176 (595)
T TIGR01393 121 NDLEIIPVINKIDLPSADP--------ERVKKEIEE----------VI-----G-LDASEAILASAKTGIGIEEILEAIV 176 (595)
T ss_pred cCCCEEEEEECcCCCccCH--------HHHHHHHHH----------Hh-----C-CCcceEEEeeccCCCCHHHHHHHHH
Confidence 5789999999999864322 111111110 00 0 0112589999999999999999987
Q ss_pred HHH
Q psy7275 84 LAG 86 (150)
Q Consensus 84 e~~ 86 (150)
+.+
T Consensus 177 ~~l 179 (595)
T TIGR01393 177 KRV 179 (595)
T ss_pred HhC
Confidence 654
No 204
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=97.28 E-value=0.00046 Score=60.35 Aligned_cols=19 Identities=11% Similarity=0.254 Sum_probs=16.2
Q ss_pred CCcEEEeecCCCCCHHHHH
Q psy7275 61 TLKVVGFSSVSGEGTEELL 79 (150)
Q Consensus 61 ~l~vv~VSA~TGeGideL~ 79 (150)
..++++|||.+|+|++++.
T Consensus 171 ~~~iipiSA~~g~ni~~~~ 189 (406)
T TIGR02034 171 DVTFIPLSALKGDNVVSRS 189 (406)
T ss_pred CccEEEeecccCCCCcccc
Confidence 4689999999999998643
No 205
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.27 E-value=0.00042 Score=60.53 Aligned_cols=60 Identities=17% Similarity=0.237 Sum_probs=45.4
Q ss_pred CEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHHHH
Q psy7275 7 PYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKLAG 86 (150)
Q Consensus 7 P~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e~~ 86 (150)
-+|+|-||+|+++.+.+.| .|+...+.++. ..-.+.++++|||.-+.++|.|+++|.+.+
T Consensus 142 ~iiIvQNKIDlV~~E~AlE---~y~qIk~FvkG-----------------t~Ae~aPIIPiSA~~~~NIDal~e~i~~~I 201 (415)
T COG5257 142 NIIIVQNKIDLVSRERALE---NYEQIKEFVKG-----------------TVAENAPIIPISAQHKANIDALIEAIEKYI 201 (415)
T ss_pred eEEEEecccceecHHHHHH---HHHHHHHHhcc-----------------cccCCCceeeehhhhccCHHHHHHHHHHhC
Confidence 4799999999999887644 55555554432 123467999999999999999999887654
No 206
>PRK00093 GTP-binding protein Der; Reviewed
Probab=97.25 E-value=0.00046 Score=59.96 Aligned_cols=51 Identities=27% Similarity=0.292 Sum_probs=36.1
Q ss_pred CCCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhc-CC-cEEEeecCCCCCHHHHHH
Q psy7275 3 DTGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYS-TL-KVVGFSSVSGEGTEELLQ 80 (150)
Q Consensus 3 k~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~-~l-~vv~VSA~TGeGideL~~ 80 (150)
+.+.|+|+|+||+|..+.+. ..+ +|+. ++ .+++|||.+|.|++++++
T Consensus 107 ~~~~piilv~NK~D~~~~~~---------~~~----------------------~~~~lg~~~~~~iSa~~g~gv~~l~~ 155 (435)
T PRK00093 107 KSNKPVILVVNKVDGPDEEA---------DAY----------------------EFYSLGLGEPYPISAEHGRGIGDLLD 155 (435)
T ss_pred HcCCcEEEEEECccCccchh---------hHH----------------------HHHhcCCCCCEEEEeeCCCCHHHHHH
Confidence 45789999999999654211 001 1111 22 578999999999999999
Q ss_pred HHHH
Q psy7275 81 LIKL 84 (150)
Q Consensus 81 ~I~e 84 (150)
.|..
T Consensus 156 ~I~~ 159 (435)
T PRK00093 156 AILE 159 (435)
T ss_pred HHHh
Confidence 9876
No 207
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=97.25 E-value=0.0011 Score=49.83 Aligned_cols=57 Identities=7% Similarity=0.093 Sum_probs=36.1
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCC---CCCHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVS---GEGTEELLQ 80 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~T---GeGideL~~ 80 (150)
..+|+|+|.||+|+....... .+ ....+ .+- ...+++.+||++ +.|+++++.
T Consensus 108 ~~~p~iiv~nK~Dl~~~~~~~-----~~-~~~~~------------------~~~-~~~~~~e~Sa~~~~~~~~i~~~f~ 162 (170)
T cd04115 108 NEVPRILVGNKCDLREQIQVP-----TD-LAQRF------------------ADA-HSMPLFETSAKDPSENDHVEAIFM 162 (170)
T ss_pred CCCCEEEEEECccchhhcCCC-----HH-HHHHH------------------HHH-cCCcEEEEeccCCcCCCCHHHHHH
Confidence 468999999999986432210 00 00111 011 146899999999 888888887
Q ss_pred HHHHH
Q psy7275 81 LIKLA 85 (150)
Q Consensus 81 ~I~e~ 85 (150)
.+...
T Consensus 163 ~l~~~ 167 (170)
T cd04115 163 TLAHK 167 (170)
T ss_pred HHHHH
Confidence 77543
No 208
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=97.23 E-value=0.00028 Score=53.28 Aligned_cols=57 Identities=19% Similarity=0.230 Sum_probs=36.6
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhh--cCCcEEEeecCC------CCCH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFY--STLKVVGFSSVS------GEGT 75 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy--~~l~vv~VSA~T------GeGi 75 (150)
.+.|+|+|.||+|+.++... +.+...+. +..+- ....++.+||++ |+|+
T Consensus 98 ~~~piilv~NK~Dl~~~~~~-------~~i~~~~~----------------~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v 154 (164)
T cd04162 98 PDLPLVVLANKQDLPAARSV-------QEIHKELE----------------LEPIARGRRWILQGTSLDDDGSPSRMEAV 154 (164)
T ss_pred CCCcEEEEEeCcCCcCCCCH-------HHHHHHhC----------------ChhhcCCCceEEEEeeecCCCChhHHHHH
Confidence 46899999999998654321 11111111 01111 135778889988 9999
Q ss_pred HHHHHHHH
Q psy7275 76 EELLQLIK 83 (150)
Q Consensus 76 deL~~~I~ 83 (150)
+++|+.+.
T Consensus 155 ~~~~~~~~ 162 (164)
T cd04162 155 KDLLSQLI 162 (164)
T ss_pred HHHHHHHh
Confidence 99998765
No 209
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=97.22 E-value=0.00042 Score=54.72 Aligned_cols=17 Identities=12% Similarity=0.333 Sum_probs=14.7
Q ss_pred CcEEEeecCCCCCHHHH
Q psy7275 62 LKVVGFSSVSGEGTEEL 78 (150)
Q Consensus 62 l~vv~VSA~TGeGideL 78 (150)
.++++|||.+|.|+++.
T Consensus 169 ~~ii~iSA~~g~ni~~~ 185 (208)
T cd04166 169 ITFIPISALDGDNVVSR 185 (208)
T ss_pred ceEEEEeCCCCCCCccC
Confidence 56999999999999753
No 210
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.18 E-value=0.00075 Score=57.75 Aligned_cols=57 Identities=23% Similarity=0.274 Sum_probs=40.1
Q ss_pred CCCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhc--CCcEEEeecCCCCCHHHHHH
Q psy7275 3 DTGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYS--TLKVVGFSSVSGEGTEELLQ 80 (150)
Q Consensus 3 k~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~--~l~vv~VSA~TGeGideL~~ 80 (150)
..++..|+|+||+|+++.+.... +... .+|. +.+++.+|+++++|+++|.+
T Consensus 108 ~~gi~pvIvlnK~DL~~~~~~~~--~~~~-------------------------~~y~~~gy~v~~~s~~~~~~~~~l~~ 160 (301)
T COG1162 108 AGGIEPVIVLNKIDLLDDEEAAV--KELL-------------------------REYEDIGYPVLFVSAKNGDGLEELAE 160 (301)
T ss_pred HcCCcEEEEEEccccCcchHHHH--HHHH-------------------------HHHHhCCeeEEEecCcCcccHHHHHH
Confidence 46788899999999987665321 0011 1222 34889999999999999998
Q ss_pred HHHHHH
Q psy7275 81 LIKLAG 86 (150)
Q Consensus 81 ~I~e~~ 86 (150)
.+....
T Consensus 161 ~l~~~~ 166 (301)
T COG1162 161 LLAGKI 166 (301)
T ss_pred HhcCCe
Confidence 887643
No 211
>PRK09866 hypothetical protein; Provisional
Probab=97.18 E-value=0.00079 Score=63.17 Aligned_cols=60 Identities=15% Similarity=0.114 Sum_probs=38.4
Q ss_pred CCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHH-HhhcCCcEEEeecCCCCCHHHHHHHHHH
Q psy7275 6 FPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALD-EFYSTLKVVGFSSVSGEGTEELLQLIKL 84 (150)
Q Consensus 6 lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~-efy~~l~vv~VSA~TGeGideL~~~I~e 84 (150)
.|+|+|+||+|..+.+.. +.+.+.+.+.. .+. .....-++++|||++|.|+++|++.|..
T Consensus 290 ~PVILVVNKIDl~dreed-----dkE~Lle~V~~--------------~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 290 VPLYVLVNKFDQQDRNSD-----DADQVRALISG--------------TLMKGCITPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred CCEEEEEEcccCCCcccc-----hHHHHHHHHHH--------------HHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence 599999999998643220 11112222110 011 1123458999999999999999999987
No 212
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=97.16 E-value=0.0014 Score=48.14 Aligned_cols=57 Identities=18% Similarity=0.135 Sum_probs=38.6
Q ss_pred CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHH
Q psy7275 5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKL 84 (150)
Q Consensus 5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e 84 (150)
..|+|+|.||+|+.+.... +.+..++.. .-+ +.+++.+||++|.|+.+++..+.+
T Consensus 104 ~~~iivvg~K~D~~~~~~v-----~~~~~~~~~-------------------~~~-~~~~~e~Sa~~~~~v~~~f~~~i~ 158 (162)
T PF00071_consen 104 DIPIIVVGNKSDLSDEREV-----SVEEAQEFA-------------------KEL-GVPYFEVSAKNGENVKEIFQELIR 158 (162)
T ss_dssp TSEEEEEEETTTGGGGSSS-----CHHHHHHHH-------------------HHT-TSEEEEEBTTTTTTHHHHHHHHHH
T ss_pred cccceeeeccccccccccc-----hhhHHHHHH-------------------HHh-CCEEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999998652221 111111111 112 389999999999999999998876
Q ss_pred HH
Q psy7275 85 AG 86 (150)
Q Consensus 85 ~~ 86 (150)
.+
T Consensus 159 ~i 160 (162)
T PF00071_consen 159 KI 160 (162)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 213
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=97.15 E-value=0.00075 Score=63.01 Aligned_cols=53 Identities=25% Similarity=0.242 Sum_probs=37.1
Q ss_pred CCCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhc--CCcEEEeecCCCCCHHHHHH
Q psy7275 3 DTGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYS--TLKVVGFSSVSGEGTEELLQ 80 (150)
Q Consensus 3 k~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~--~l~vv~VSA~TGeGideL~~ 80 (150)
+.+.|+|+|+||+|+...... .. +|+. .-..++|||++|.|+++|++
T Consensus 381 ~~~~pvIlV~NK~D~~~~~~~---------~~----------------------~~~~lg~~~~~~iSA~~g~GI~eLl~ 429 (712)
T PRK09518 381 RAGKPVVLAVNKIDDQASEYD---------AA----------------------EFWKLGLGEPYPISAMHGRGVGDLLD 429 (712)
T ss_pred hcCCCEEEEEECcccccchhh---------HH----------------------HHHHcCCCCeEEEECCCCCCchHHHH
Confidence 457899999999998542110 00 1110 12467999999999999999
Q ss_pred HHHHHH
Q psy7275 81 LIKLAG 86 (150)
Q Consensus 81 ~I~e~~ 86 (150)
.|.+.+
T Consensus 430 ~i~~~l 435 (712)
T PRK09518 430 EALDSL 435 (712)
T ss_pred HHHHhc
Confidence 987765
No 214
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=97.12 E-value=0.0018 Score=55.68 Aligned_cols=28 Identities=32% Similarity=0.329 Sum_probs=25.0
Q ss_pred CcEEEeecCCCCCHHHHHHHHHHHHHHH
Q psy7275 62 LKVVGFSSVSGEGTEELLQLIKLAGEDY 89 (150)
Q Consensus 62 l~vv~VSA~TGeGideL~~~I~e~~~ey 89 (150)
.+++.+||.+|+|+++|+++|.++.+..
T Consensus 229 ppv~~t~A~~g~Gi~~L~~ai~~h~~~~ 256 (323)
T COG1703 229 PPVVTTSALEGEGIDELWDAIEDHRKFL 256 (323)
T ss_pred CceeEeeeccCCCHHHHHHHHHHHHHHH
Confidence 5999999999999999999999877543
No 215
>COG0218 Predicted GTPase [General function prediction only]
Probab=97.08 E-value=0.0022 Score=52.05 Aligned_cols=64 Identities=22% Similarity=0.193 Sum_probs=42.0
Q ss_pred CCCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCC--cEEEeecCCCCCHHHHHH
Q psy7275 3 DTGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTL--KVVGFSSVSGEGTEELLQ 80 (150)
Q Consensus 3 k~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l--~vv~VSA~TGeGideL~~ 80 (150)
..++|+++|+||+|.++.... -.-.....+.+. +...- .++.+|+.++.|++++..
T Consensus 133 ~~~i~~~vv~tK~DKi~~~~~---~k~l~~v~~~l~-------------------~~~~~~~~~~~~ss~~k~Gi~~l~~ 190 (200)
T COG0218 133 ELGIPVIVVLTKADKLKKSER---NKQLNKVAEELK-------------------KPPPDDQWVVLFSSLKKKGIDELKA 190 (200)
T ss_pred HcCCCeEEEEEccccCChhHH---HHHHHHHHHHhc-------------------CCCCccceEEEEecccccCHHHHHH
Confidence 468999999999998875432 111111111111 11111 289999999999999999
Q ss_pred HHHHHHHH
Q psy7275 81 LIKLAGED 88 (150)
Q Consensus 81 ~I~e~~~e 88 (150)
.|.+.+.+
T Consensus 191 ~i~~~~~~ 198 (200)
T COG0218 191 KILEWLKE 198 (200)
T ss_pred HHHHHhhc
Confidence 99877643
No 216
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=97.07 E-value=0.0008 Score=58.88 Aligned_cols=20 Identities=15% Similarity=0.228 Sum_probs=16.9
Q ss_pred CCcEEEeecCCCCCHHHHHH
Q psy7275 61 TLKVVGFSSVSGEGTEELLQ 80 (150)
Q Consensus 61 ~l~vv~VSA~TGeGideL~~ 80 (150)
..++++|||++|.|+++...
T Consensus 181 ~~~~i~iSA~~g~ni~~~~~ 200 (426)
T TIGR00483 181 TVPFIPISAWNGDNVIKKSE 200 (426)
T ss_pred cceEEEeecccccccccccc
Confidence 36899999999999987554
No 217
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=97.07 E-value=0.00092 Score=58.39 Aligned_cols=19 Identities=11% Similarity=0.247 Sum_probs=16.5
Q ss_pred CcEEEeecCCCCCHHHHHH
Q psy7275 62 LKVVGFSSVSGEGTEELLQ 80 (150)
Q Consensus 62 l~vv~VSA~TGeGideL~~ 80 (150)
.++++|||++|+|++++.+
T Consensus 180 ~~ii~iSA~~g~gi~~~~~ 198 (425)
T PRK12317 180 IPFIPVSAFEGDNVVKKSE 198 (425)
T ss_pred ceEEEeecccCCCcccccc
Confidence 5899999999999988653
No 218
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=97.05 E-value=0.0024 Score=50.14 Aligned_cols=58 Identities=10% Similarity=0.061 Sum_probs=39.6
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK 83 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~ 83 (150)
..+|+++|.||+|+.+.....+.. ... + ..++.++.+||++|.|+++.+..|.
T Consensus 112 ~~~~i~lv~nK~Dl~~~~~~~~~~-------~~~-------------------~-~~~~~~~e~Sa~~~~~v~~~f~~ia 164 (215)
T PTZ00132 112 ENIPIVLVGNKVDVKDRQVKARQI-------TFH-------------------R-KKNLQYYDISAKSNYNFEKPFLWLA 164 (215)
T ss_pred CCCCEEEEEECccCccccCCHHHH-------HHH-------------------H-HcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 358999999999986432211100 000 0 1246889999999999999999988
Q ss_pred HHHHH
Q psy7275 84 LAGED 88 (150)
Q Consensus 84 e~~~e 88 (150)
+.+..
T Consensus 165 ~~l~~ 169 (215)
T PTZ00132 165 RRLTN 169 (215)
T ss_pred HHHhh
Confidence 77643
No 219
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=97.04 E-value=0.0008 Score=57.55 Aligned_cols=58 Identities=14% Similarity=-0.020 Sum_probs=40.2
Q ss_pred CCCCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHH-
Q psy7275 2 YDTGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQ- 80 (150)
Q Consensus 2 yk~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~- 80 (150)
+.+..|+|+|+||+|+.+.+. +. +.+. ..+...++++|||..|.|+++|.+
T Consensus 211 llt~KPvI~VlNK~Dl~~~~~---~~-------~~l~------------------~~~~~~~iI~iSA~~e~~L~~L~~~ 262 (318)
T cd01899 211 RKRSKPMVIAANKADIPDAEN---NI-------SKLR------------------LKYPDEIVVPTSAEAELALRRAAKQ 262 (318)
T ss_pred HhcCCcEEEEEEHHHccChHH---HH-------HHHH------------------hhCCCCeEEEEeCcccccHHHHHHh
Confidence 356789999999999754332 11 1111 112346899999999999999987
Q ss_pred HHHHHHH
Q psy7275 81 LIKLAGE 87 (150)
Q Consensus 81 ~I~e~~~ 87 (150)
.+.+.+.
T Consensus 263 ~i~~~lP 269 (318)
T cd01899 263 GLIKYDP 269 (318)
T ss_pred hHHHhCC
Confidence 4777663
No 220
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=97.03 E-value=0.0014 Score=58.45 Aligned_cols=82 Identities=16% Similarity=0.169 Sum_probs=48.7
Q ss_pred CCCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHH-HHHHHHHhhc-CCcEEEeecCCCCCHHHHHH
Q psy7275 3 DTGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRS-MSLALDEFYS-TLKVVGFSSVSGEGTEELLQ 80 (150)
Q Consensus 3 k~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~s-lsl~l~efy~-~l~vv~VSA~TGeGideL~~ 80 (150)
-.++|+|+|++|+|+++.+......++..++...+..-.....+.--. ++-....... -.|++.+||+||+|++-|.+
T Consensus 253 a~~lPviVvvTK~D~~~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e 332 (527)
T COG5258 253 AMELPVIVVVTKIDMVPDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDE 332 (527)
T ss_pred hhcCCEEEEEEecccCcHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHH
Confidence 467899999999999988776666666666665543211000000000 0001112222 24899999999999876655
Q ss_pred HHHH
Q psy7275 81 LIKL 84 (150)
Q Consensus 81 ~I~e 84 (150)
.+..
T Consensus 333 ~f~~ 336 (527)
T COG5258 333 FFLL 336 (527)
T ss_pred HHHh
Confidence 5443
No 221
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=97.02 E-value=0.0013 Score=57.20 Aligned_cols=51 Identities=24% Similarity=0.070 Sum_probs=39.5
Q ss_pred CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHH
Q psy7275 5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKL 84 (150)
Q Consensus 5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e 84 (150)
-+|.|+|+||+|+.+.+.. +.+ ....++++|||.+|.|+++|.+.|..
T Consensus 239 Y~p~l~v~NKiD~~~~e~~-----------~~l---------------------~~~~~~v~isa~~~~nld~L~e~i~~ 286 (365)
T COG1163 239 YKPALYVVNKIDLPGLEEL-----------ERL---------------------ARKPNSVPISAKKGINLDELKERIWD 286 (365)
T ss_pred eeeeEEEEecccccCHHHH-----------HHH---------------------HhccceEEEecccCCCHHHHHHHHHH
Confidence 3699999999999874332 111 12248999999999999999999998
Q ss_pred HHH
Q psy7275 85 AGE 87 (150)
Q Consensus 85 ~~~ 87 (150)
.+.
T Consensus 287 ~L~ 289 (365)
T COG1163 287 VLG 289 (365)
T ss_pred hhC
Confidence 764
No 222
>PLN00043 elongation factor 1-alpha; Provisional
Probab=97.02 E-value=0.0017 Score=57.74 Aligned_cols=56 Identities=14% Similarity=0.193 Sum_probs=33.6
Q ss_pred CCCC-EEEeeecCCCCCchhhHHHh-hcHHHHHHHHhhchhhhhhhHHHHHHHHHHhh---cCCcEEEeecCCCCCHHH
Q psy7275 4 TGFP-YTELVVGIDIVNHKYAIEWM-QDFEVFQEALEADSSYISNLTRSMSLALDEFY---STLKVVGFSSVSGEGTEE 77 (150)
Q Consensus 4 ~~lP-~IlV~NKiDl~~~~~~~ewm-~D~e~f~eal~~e~~y~~~L~~slsl~l~efy---~~l~vv~VSA~TGeGide 77 (150)
.++| +|+|+||+|+.+.+ |. .+|+...+.+. ..+.++. ..+++++|||++|+|+.+
T Consensus 143 ~gi~~iIV~vNKmD~~~~~----~~~~~~~~i~~ei~--------------~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 143 LGVKQMICCCNKMDATTPK----YSKARYDEIVKEVS--------------SYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred cCCCcEEEEEEcccCCchh----hhHHHHHHHHHHHH--------------HHHHHcCCCcccceEEEEeccccccccc
Confidence 5776 68889999986322 32 23433333322 1112211 146899999999999864
No 223
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=96.97 E-value=0.0018 Score=57.51 Aligned_cols=59 Identities=14% Similarity=0.262 Sum_probs=32.9
Q ss_pred CCCC-EEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhh-cCCcEEEeecCCCCCHHH
Q psy7275 4 TGFP-YTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFY-STLKVVGFSSVSGEGTEE 77 (150)
Q Consensus 4 ~~lP-~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy-~~l~vv~VSA~TGeGide 77 (150)
.++| +|+|+||+|....++..+ +|+...+.+.. +...+ .|. ..+++|+|||.+|+|+.+
T Consensus 143 ~gi~~iiv~vNKmD~~~~~~~~~---~~~~i~~~i~~-------~l~~~-----g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 143 LGVKQMIVCINKMDDKTVNYSQE---RYDEIKKEVSA-------YLKKV-----GYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred cCCCeEEEEEEccccccchhhHH---HHHHHHHHHHH-------HHHhc-----CCCcccceEEEeecccCCCccc
Confidence 5677 578999999543222111 23332232221 11111 111 247899999999999965
No 224
>KOG1144|consensus
Probab=96.95 E-value=0.0025 Score=60.69 Aligned_cols=31 Identities=29% Similarity=0.396 Sum_probs=26.3
Q ss_pred CcEEEeecCCCCCHHHHHHHHHHHHHHHHhh
Q psy7275 62 LKVVGFSSVSGEGTEELLQLIKLAGEDYEKN 92 (150)
Q Consensus 62 l~vv~VSA~TGeGideL~~~I~e~~~ey~~~ 92 (150)
+.+||.||.+|+|+.+|+..|.+..+-+...
T Consensus 662 vsiVPTSA~sGeGipdLl~llv~ltQk~m~~ 692 (1064)
T KOG1144|consen 662 VSIVPTSAISGEGIPDLLLLLVQLTQKTMVE 692 (1064)
T ss_pred EEeeecccccCCCcHHHHHHHHHHHHHHHHH
Confidence 4779999999999999999999888766543
No 225
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=96.93 E-value=0.0019 Score=59.59 Aligned_cols=67 Identities=21% Similarity=0.149 Sum_probs=39.3
Q ss_pred CCCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCC---------
Q psy7275 3 DTGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGE--------- 73 (150)
Q Consensus 3 k~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGe--------- 73 (150)
..++|+|+|+||+|+.+..+. +...+...+...+..+ ++ ...++++++||.+|.
T Consensus 114 ~~~ip~IVviNKiD~~~a~~~-~v~~ei~~l~~~~g~~---------------~e-~l~~pvl~~SA~~g~~~~~~~~~~ 176 (594)
T TIGR01394 114 ELGLKPIVVINKIDRPSARPD-EVVDEVFDLFAELGAD---------------DE-QLDFPIVYASGRAGWASLDLDDPS 176 (594)
T ss_pred HCCCCEEEEEECCCCCCcCHH-HHHHHHHHHHHhhccc---------------cc-cccCcEEechhhcCcccccCcccc
Confidence 457899999999998654331 1111111110000000 00 113689999999996
Q ss_pred -CHHHHHHHHHHHH
Q psy7275 74 -GTEELLQLIKLAG 86 (150)
Q Consensus 74 -GideL~~~I~e~~ 86 (150)
|++.|++.|.+.+
T Consensus 177 ~gi~~Lld~Iv~~l 190 (594)
T TIGR01394 177 DNMAPLFDAIVRHV 190 (594)
T ss_pred cCHHHHHHHHHHhC
Confidence 7888888776654
No 226
>PRK12735 elongation factor Tu; Reviewed
Probab=96.92 E-value=0.0022 Score=55.86 Aligned_cols=25 Identities=12% Similarity=0.081 Sum_probs=18.5
Q ss_pred CCcEEEeecCCCC----------CHHHHHHHHHHH
Q psy7275 61 TLKVVGFSSVSGE----------GTEELLQLIKLA 85 (150)
Q Consensus 61 ~l~vv~VSA~TGe----------GideL~~~I~e~ 85 (150)
..+++++||.+|. |+..|+++|...
T Consensus 167 ~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~ 201 (396)
T PRK12735 167 DTPIIRGSALKALEGDDDEEWEAKILELMDAVDSY 201 (396)
T ss_pred ceeEEecchhccccCCCCCcccccHHHHHHHHHhc
Confidence 3689999999995 566666666553
No 227
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=96.92 E-value=0.0015 Score=60.06 Aligned_cols=20 Identities=10% Similarity=0.217 Sum_probs=16.4
Q ss_pred cCCcEEEeecCCCCCHHHHH
Q psy7275 60 STLKVVGFSSVSGEGTEELL 79 (150)
Q Consensus 60 ~~l~vv~VSA~TGeGideL~ 79 (150)
...++++|||++|.|++++-
T Consensus 194 ~~~~iipiSA~~g~ni~~~~ 213 (632)
T PRK05506 194 HDVTFIPISALKGDNVVTRS 213 (632)
T ss_pred CCccEEEEecccCCCccccc
Confidence 34679999999999998643
No 228
>CHL00071 tufA elongation factor Tu
Probab=96.92 E-value=0.0021 Score=56.20 Aligned_cols=19 Identities=21% Similarity=0.359 Sum_probs=14.9
Q ss_pred CCCCC-EEEeeecCCCCCch
Q psy7275 3 DTGFP-YTELVVGIDIVNHK 21 (150)
Q Consensus 3 k~~lP-~IlV~NKiDl~~~~ 21 (150)
+.++| +|+|+||+|+.+.+
T Consensus 125 ~~g~~~iIvvvNK~D~~~~~ 144 (409)
T CHL00071 125 QVGVPNIVVFLNKEDQVDDE 144 (409)
T ss_pred HcCCCEEEEEEEccCCCCHH
Confidence 46789 77899999997643
No 229
>KOG0092|consensus
Probab=96.91 E-value=0.0018 Score=52.45 Aligned_cols=28 Identities=25% Similarity=0.218 Sum_probs=24.9
Q ss_pred cCCcEEEeecCCCCCHHHHHHHHHHHHH
Q psy7275 60 STLKVVGFSSVSGEGTEELLQLIKLAGE 87 (150)
Q Consensus 60 ~~l~vv~VSA~TGeGideL~~~I~e~~~ 87 (150)
.++.++.+||+||.|++++|..|.+.+-
T Consensus 140 ~gll~~ETSAKTg~Nv~~if~~Ia~~lp 167 (200)
T KOG0092|consen 140 QGLLFFETSAKTGENVNEIFQAIAEKLP 167 (200)
T ss_pred cCCEEEEEecccccCHHHHHHHHHHhcc
Confidence 3689999999999999999999988763
No 230
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=96.89 E-value=0.0015 Score=58.50 Aligned_cols=19 Identities=16% Similarity=0.335 Sum_probs=16.8
Q ss_pred CCcEEEeecCCCCCHHHHH
Q psy7275 61 TLKVVGFSSVSGEGTEELL 79 (150)
Q Consensus 61 ~l~vv~VSA~TGeGideL~ 79 (150)
..++++|||++|+|++++.
T Consensus 199 ~~~iipvSA~~g~ni~~~~ 217 (474)
T PRK05124 199 DIRFVPLSALEGDNVVSQS 217 (474)
T ss_pred CceEEEEEeecCCCccccc
Confidence 5789999999999998764
No 231
>KOG1423|consensus
Probab=96.86 E-value=0.0013 Score=57.10 Aligned_cols=62 Identities=18% Similarity=0.205 Sum_probs=41.5
Q ss_pred cEEEeecCCCCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHhhCCCCCC
Q psy7275 63 KVVGFSSVSGEGTEELLQLIKLAGEDYEKNYRVEWIRLRDEKAKSEQLEKREQHFALPTPQP 124 (150)
Q Consensus 63 ~vv~VSA~TGeGideL~~~I~e~~~ey~~~y~pe~e~~~~~~~~~~~~~~~~~~~~l~~~~~ 124 (150)
+++.|||++|+|+++|.+.+-..+..-.=.|....---...++-+-+--+++-|+.+..+.+
T Consensus 247 ~vF~vSaL~G~GikdlkqyLmsqa~~gpW~y~a~i~T~~s~e~l~~e~VReklLd~~pqEVP 308 (379)
T KOG1423|consen 247 RVFMVSALYGEGIKDLKQYLMSQAPPGPWKYPADIVTEESPEFLCSESVREKLLDHLPQEVP 308 (379)
T ss_pred eEEEEecccccCHHHHHHHHHhcCCCCCCCCCcccccccCHHHHHHHHHHHHHHhhCccccC
Confidence 69999999999999999999887754333333322222233344445556677888888764
No 232
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=96.82 E-value=0.0021 Score=55.79 Aligned_cols=19 Identities=16% Similarity=0.134 Sum_probs=14.5
Q ss_pred CcEEEeecCCCC-CHHHHHH
Q psy7275 62 LKVVGFSSVSGE-GTEELLQ 80 (150)
Q Consensus 62 l~vv~VSA~TGe-GideL~~ 80 (150)
.+++++||++|. |..++++
T Consensus 168 ~~ii~vSa~~g~~g~~~~~~ 187 (394)
T TIGR00485 168 TPIIRGSALKALEGDAEWEA 187 (394)
T ss_pred ccEEECccccccccCCchhH
Confidence 689999999995 5555544
No 233
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=96.80 E-value=0.0044 Score=50.17 Aligned_cols=25 Identities=24% Similarity=0.340 Sum_probs=21.6
Q ss_pred CcEEEeecCCCC-CHHHHHHHHHHHH
Q psy7275 62 LKVVGFSSVSGE-GTEELLQLIKLAG 86 (150)
Q Consensus 62 l~vv~VSA~TGe-GideL~~~I~e~~ 86 (150)
..++.+||++|+ |++++|.....+.
T Consensus 150 ~~y~E~SAk~~~~~V~~~F~~~~~~~ 175 (222)
T cd04173 150 VSYVECSSRSSERSVRDVFHVATVAS 175 (222)
T ss_pred CEEEEcCCCcCCcCHHHHHHHHHHHH
Confidence 589999999999 4999999988764
No 234
>PRK00049 elongation factor Tu; Reviewed
Probab=96.79 E-value=0.0028 Score=55.31 Aligned_cols=18 Identities=28% Similarity=0.613 Sum_probs=13.9
Q ss_pred CCCCCEE-EeeecCCCCCc
Q psy7275 3 DTGFPYT-ELVVGIDIVNH 20 (150)
Q Consensus 3 k~~lP~I-lV~NKiDl~~~ 20 (150)
..++|.| +|+||+|+.+.
T Consensus 125 ~~g~p~iiVvvNK~D~~~~ 143 (396)
T PRK00049 125 QVGVPYIVVFLNKCDMVDD 143 (396)
T ss_pred HcCCCEEEEEEeecCCcch
Confidence 4578976 58999999753
No 235
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=96.74 E-value=0.0016 Score=57.36 Aligned_cols=50 Identities=16% Similarity=0.251 Sum_probs=35.7
Q ss_pred CEEEeeecCCCCCchhh--HHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHH
Q psy7275 7 PYTELVVGIDIVNHKYA--IEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTE 76 (150)
Q Consensus 7 P~IlV~NKiDl~~~~~~--~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGid 76 (150)
-+|+++||+||++-+.. .+...||.+|.+.+. .....+||+||..|.++-
T Consensus 141 hvvvAVNKmDLvdy~e~~F~~I~~dy~~fa~~L~--------------------~~~~~~IPiSAl~GDNV~ 192 (431)
T COG2895 141 HVVVAVNKMDLVDYSEEVFEAIVADYLAFAAQLG--------------------LKDVRFIPISALLGDNVV 192 (431)
T ss_pred EEEEEEeeecccccCHHHHHHHHHHHHHHHHHcC--------------------CCcceEEechhccCCccc
Confidence 47899999999986543 345556666655543 124599999999999863
No 236
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=96.68 E-value=0.0029 Score=51.58 Aligned_cols=24 Identities=38% Similarity=0.355 Sum_probs=20.3
Q ss_pred CcEEEeecCCCCCHHHHHHHHHHH
Q psy7275 62 LKVVGFSSVSGEGTEELLQLIKLA 85 (150)
Q Consensus 62 l~vv~VSA~TGeGideL~~~I~e~ 85 (150)
+|++.-||.++.|++.|++.|...
T Consensus 210 ~Pv~~gsa~~~~Gv~~ll~~~~~~ 233 (237)
T cd04168 210 FPVYHGSALKGIGIEELLEGITKL 233 (237)
T ss_pred EEEEEccccCCcCHHHHHHHHHHh
Confidence 366677999999999999998764
No 237
>PLN03127 Elongation factor Tu; Provisional
Probab=96.60 E-value=0.0042 Score=55.36 Aligned_cols=18 Identities=22% Similarity=0.569 Sum_probs=14.2
Q ss_pred CCCCC-EEEeeecCCCCCc
Q psy7275 3 DTGFP-YTELVVGIDIVNH 20 (150)
Q Consensus 3 k~~lP-~IlV~NKiDl~~~ 20 (150)
..++| +|+|+||+|+++.
T Consensus 174 ~~gip~iIvviNKiDlv~~ 192 (447)
T PLN03127 174 QVGVPSLVVFLNKVDVVDD 192 (447)
T ss_pred HcCCCeEEEEEEeeccCCH
Confidence 46789 4789999999753
No 238
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=96.58 E-value=0.0058 Score=54.39 Aligned_cols=54 Identities=17% Similarity=0.243 Sum_probs=36.9
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK 83 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~ 83 (150)
.+.|+|+|+||+|+...+. +.+.. ..+.+++.|||++ .|++++++.+.
T Consensus 309 ~~~piIlV~NK~Dl~~~~~--------~~~~~-----------------------~~~~~~~~vSak~-~gI~~~~~~L~ 356 (442)
T TIGR00450 309 SKKPFILVLNKIDLKINSL--------EFFVS-----------------------SKVLNSSNLSAKQ-LKIKALVDLLT 356 (442)
T ss_pred CCCCEEEEEECccCCCcch--------hhhhh-----------------------hcCCceEEEEEec-CCHHHHHHHHH
Confidence 4679999999999864311 11110 0135788999998 58888888887
Q ss_pred HHHHHH
Q psy7275 84 LAGEDY 89 (150)
Q Consensus 84 e~~~ey 89 (150)
+.+.+.
T Consensus 357 ~~i~~~ 362 (442)
T TIGR00450 357 QKINAF 362 (442)
T ss_pred HHHHHH
Confidence 776543
No 239
>PLN03126 Elongation factor Tu; Provisional
Probab=96.53 E-value=0.0047 Score=55.61 Aligned_cols=18 Identities=22% Similarity=0.381 Sum_probs=14.3
Q ss_pred CCCCC-EEEeeecCCCCCc
Q psy7275 3 DTGFP-YTELVVGIDIVNH 20 (150)
Q Consensus 3 k~~lP-~IlV~NKiDl~~~ 20 (150)
..++| +|+|+||+|+.+.
T Consensus 194 ~~gi~~iIvvvNK~Dl~~~ 212 (478)
T PLN03126 194 QVGVPNMVVFLNKQDQVDD 212 (478)
T ss_pred HcCCCeEEEEEecccccCH
Confidence 35788 6789999999764
No 240
>PRK10218 GTP-binding protein; Provisional
Probab=96.49 E-value=0.0049 Score=57.08 Aligned_cols=67 Identities=12% Similarity=0.039 Sum_probs=38.6
Q ss_pred CCCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCC---------
Q psy7275 3 DTGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGE--------- 73 (150)
Q Consensus 3 k~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGe--------- 73 (150)
..++|.|+|+||+|+.+..+. +-+ +.+.+.+. .+. ..+-...++++++||++|.
T Consensus 118 ~~gip~IVviNKiD~~~a~~~-~vl---~ei~~l~~-----------~l~--~~~~~~~~PVi~~SA~~G~~~~~~~~~~ 180 (607)
T PRK10218 118 AYGLKPIVVINKVDRPGARPD-WVV---DQVFDLFV-----------NLD--ATDEQLDFPIVYASALNGIAGLDHEDMA 180 (607)
T ss_pred HcCCCEEEEEECcCCCCCchh-HHH---HHHHHHHh-----------ccC--ccccccCCCEEEeEhhcCcccCCccccc
Confidence 467899999999998765432 111 11111110 000 0001124689999999998
Q ss_pred -CHHHHHHHHHHHH
Q psy7275 74 -GTEELLQLIKLAG 86 (150)
Q Consensus 74 -GideL~~~I~e~~ 86 (150)
|+..|+++|.+.+
T Consensus 181 ~~i~~Lld~Ii~~i 194 (607)
T PRK10218 181 EDMTPLYQAIVDHV 194 (607)
T ss_pred cchHHHHHHHHHhC
Confidence 5777777665543
No 241
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=96.43 E-value=0.0088 Score=47.16 Aligned_cols=16 Identities=25% Similarity=0.407 Sum_probs=13.7
Q ss_pred CCCCEEEeeecCCCCC
Q psy7275 4 TGFPYTELVVGIDIVN 19 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~ 19 (150)
.+.|+|+|+||+|++.
T Consensus 122 ~~~p~iiviNK~D~~~ 137 (213)
T cd04167 122 EGLPIVLVINKIDRLI 137 (213)
T ss_pred cCCCEEEEEECcccCc
Confidence 4689999999999863
No 242
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=96.42 E-value=0.0056 Score=54.87 Aligned_cols=60 Identities=20% Similarity=0.202 Sum_probs=42.1
Q ss_pred CCCE-EEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275 5 GFPY-TELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK 83 (150)
Q Consensus 5 ~lP~-IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~ 83 (150)
+++- |+|+||+|.+++....+.+ .. +..+++ +...+++.+|+.+|+|+++|.+.|.
T Consensus 102 gi~~giivltk~D~~d~~r~e~~i-------~~----------Il~~l~------l~~~~i~~~s~~~g~GI~~Lk~~l~ 158 (447)
T COG3276 102 GIKNGIIVLTKADRVDEARIEQKI-------KQ----------ILADLS------LANAKIFKTSAKTGRGIEELKNELI 158 (447)
T ss_pred CCCceEEEEeccccccHHHHHHHH-------HH----------HHhhcc------cccccccccccccCCCHHHHHHHHH
Confidence 4554 9999999998765432211 11 112221 4567889999999999999999998
Q ss_pred HHHH
Q psy7275 84 LAGE 87 (150)
Q Consensus 84 e~~~ 87 (150)
+..+
T Consensus 159 ~L~~ 162 (447)
T COG3276 159 DLLE 162 (447)
T ss_pred Hhhh
Confidence 8775
No 243
>PRK09602 translation-associated GTPase; Reviewed
Probab=96.38 E-value=0.0037 Score=55.00 Aligned_cols=65 Identities=12% Similarity=-0.128 Sum_probs=43.4
Q ss_pred CCCCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHH-HHH
Q psy7275 2 YDTGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEE-LLQ 80 (150)
Q Consensus 2 yk~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGide-L~~ 80 (150)
+.+..|+|+|+||+|+...+. ++ ..+ .++ ....+++|||..|.++++ |.+
T Consensus 214 l~t~KPvI~VlNK~D~~~~~~---~l-------~~i------------------~~~-~~~~vvpISA~~e~~l~~~l~~ 264 (396)
T PRK09602 214 RKISKPMVIAANKADLPPAEE---NI-------ERL------------------KEE-KYYIVVPTSAEAELALRRAAKA 264 (396)
T ss_pred hhcCCCEEEEEEchhcccchH---HH-------HHH------------------Hhc-CCCcEEEEcchhhhhHHHHHHH
Confidence 456789999999999753221 11 111 011 345799999999999999 777
Q ss_pred HHHHHHHHHHhhhHH
Q psy7275 81 LIKLAGEDYEKNYRV 95 (150)
Q Consensus 81 ~I~e~~~ey~~~y~p 95 (150)
.+.+.+.+-...|.+
T Consensus 265 ~i~~~lp~~p~~~~~ 279 (396)
T PRK09602 265 GLIDYIPGDSDFEIL 279 (396)
T ss_pred hHHhhCCCCCccCcc
Confidence 777766554444444
No 244
>KOG0078|consensus
Probab=96.30 E-value=0.011 Score=48.20 Aligned_cols=59 Identities=17% Similarity=0.056 Sum_probs=40.4
Q ss_pred CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHH
Q psy7275 5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKL 84 (150)
Q Consensus 5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e 84 (150)
..|.|+|-||+|+...... ..+ .-+++. .|+ ++.++.+||++|.++++.|-.+.+
T Consensus 117 ~v~~~LvGNK~D~~~~R~V-----~~e-~ge~lA-----------------~e~--G~~F~EtSAk~~~NI~eaF~~La~ 171 (207)
T KOG0078|consen 117 DVVKILVGNKCDLEEKRQV-----SKE-RGEALA-----------------REY--GIKFFETSAKTNFNIEEAFLSLAR 171 (207)
T ss_pred CCcEEEeeccccccccccc-----cHH-HHHHHH-----------------HHh--CCeEEEccccCCCCHHHHHHHHHH
Confidence 6799999999998653221 011 011111 122 689999999999999999888877
Q ss_pred HHHH
Q psy7275 85 AGED 88 (150)
Q Consensus 85 ~~~e 88 (150)
.+.+
T Consensus 172 ~i~~ 175 (207)
T KOG0078|consen 172 DILQ 175 (207)
T ss_pred HHHh
Confidence 6644
No 245
>COG1161 Predicted GTPases [General function prediction only]
Probab=96.28 E-value=0.0085 Score=51.19 Aligned_cols=57 Identities=18% Similarity=0.264 Sum_probs=45.2
Q ss_pred CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHH
Q psy7275 5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKL 84 (150)
Q Consensus 5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e 84 (150)
..|.|+|+||+|+++......|.+-|.. + ..+..+.+|+.++.|...+..++..
T Consensus 61 ~k~~i~vlNK~DL~~~~~~~~W~~~~~~------------------------~--~~~~~~~v~~~~~~~~~~i~~~~~~ 114 (322)
T COG1161 61 EKPKLLVLNKADLAPKEVTKKWKKYFKK------------------------E--EGIKPIFVSAKSRQGGKKIRKALEK 114 (322)
T ss_pred cCCcEEEEehhhcCCHHHHHHHHHHHHh------------------------c--CCCccEEEEeecccCccchHHHHHH
Confidence 4577999999999998888899854431 1 1568899999999999988888777
Q ss_pred HHH
Q psy7275 85 AGE 87 (150)
Q Consensus 85 ~~~ 87 (150)
..+
T Consensus 115 ~~~ 117 (322)
T COG1161 115 LSE 117 (322)
T ss_pred HHH
Confidence 665
No 246
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=96.19 E-value=0.028 Score=43.96 Aligned_cols=28 Identities=14% Similarity=-0.082 Sum_probs=23.9
Q ss_pred CCcEEEeecC--CCCCHHHHHHHHHHHHHH
Q psy7275 61 TLKVVGFSSV--SGEGTEELLQLIKLAGED 88 (150)
Q Consensus 61 ~l~vv~VSA~--TGeGideL~~~I~e~~~e 88 (150)
..+++.||+. .|.|+..|.+.|...+.+
T Consensus 156 ~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~ 185 (197)
T cd04104 156 EPPVFLVSNFDPSDYDFPKLRETLLKDLPA 185 (197)
T ss_pred CCCEEEEeCCChhhcChHHHHHHHHHHhhH
Confidence 3589999999 789999999999887755
No 247
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=96.09 E-value=0.0044 Score=48.31 Aligned_cols=28 Identities=14% Similarity=0.287 Sum_probs=23.0
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFE 31 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e 31 (150)
.+.|.|+|+||+|+++.+...+|++.+.
T Consensus 29 ~~kp~IlVlNK~DL~~~~~l~~~~~~~~ 56 (172)
T cd04178 29 GNKKLVLVLNKIDLVPKENVEKWLKYLR 56 (172)
T ss_pred CCCCEEEEEehhhcCCHHHHHHHHHHHH
Confidence 4689999999999998777778885543
No 248
>PRK12740 elongation factor G; Reviewed
Probab=95.96 E-value=0.017 Score=53.34 Aligned_cols=25 Identities=20% Similarity=0.155 Sum_probs=22.0
Q ss_pred CcEEEeecCCCCCHHHHHHHHHHHH
Q psy7275 62 LKVVGFSSVSGEGTEELLQLIKLAG 86 (150)
Q Consensus 62 l~vv~VSA~TGeGideL~~~I~e~~ 86 (150)
++++.+||++|.|++.|+++|...+
T Consensus 237 ~Pv~~gSA~~~~Gv~~LLd~i~~~l 261 (668)
T PRK12740 237 VPVFCGSALKNKGVQRLLDAVVDYL 261 (668)
T ss_pred EEEEeccccCCccHHHHHHHHHHHC
Confidence 4788889999999999999988754
No 249
>KOG0461|consensus
Probab=95.83 E-value=0.024 Score=50.36 Aligned_cols=64 Identities=17% Similarity=0.194 Sum_probs=42.2
Q ss_pred CEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHH--HhhcCCcEEEeecCCC----CCHHHHHH
Q psy7275 7 PYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALD--EFYSTLKVVGFSSVSG----EGTEELLQ 80 (150)
Q Consensus 7 P~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~--efy~~l~vv~VSA~TG----eGideL~~ 80 (150)
..|+|+||+|+.+......-+ +. +...+...|+ .|..+.++++|||..| +++.+|.+
T Consensus 124 klvvvinkid~lpE~qr~ski---~k--------------~~kk~~KtLe~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e 186 (522)
T KOG0461|consen 124 KLVVVINKIDVLPENQRASKI---EK--------------SAKKVRKTLESTGFDGNSPIVEVSAADGYFKEEMIQELKE 186 (522)
T ss_pred ceEEEEeccccccchhhhhHH---HH--------------HHHHHHHHHHhcCcCCCCceeEEecCCCccchhHHHHHHH
Confidence 478999999998765431111 11 1112222233 3666689999999999 88999988
Q ss_pred HHHHHHH
Q psy7275 81 LIKLAGE 87 (150)
Q Consensus 81 ~I~e~~~ 87 (150)
++.....
T Consensus 187 ~l~s~if 193 (522)
T KOG0461|consen 187 ALESRIF 193 (522)
T ss_pred HHHHhhc
Confidence 8877653
No 250
>KOG0094|consensus
Probab=95.76 E-value=0.02 Score=46.86 Aligned_cols=30 Identities=23% Similarity=0.286 Sum_probs=25.3
Q ss_pred CCcEEEeecCCCCCHHHHHHHHHHHHHHHH
Q psy7275 61 TLKVVGFSSVSGEGTEELLQLIKLAGEDYE 90 (150)
Q Consensus 61 ~l~vv~VSA~TGeGideL~~~I~e~~~ey~ 90 (150)
+..++.+||++|.++.+||..|...+.+.+
T Consensus 159 ~a~f~etsak~g~NVk~lFrrIaa~l~~~~ 188 (221)
T KOG0094|consen 159 NAEFIETSAKAGENVKQLFRRIAAALPGME 188 (221)
T ss_pred CcEEEEecccCCCCHHHHHHHHHHhccCcc
Confidence 358899999999999999999888775543
No 251
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=95.66 E-value=0.025 Score=44.66 Aligned_cols=82 Identities=18% Similarity=0.078 Sum_probs=42.0
Q ss_pred CCCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhch--hhhhh---hHHHHHHH---HH--Hh---hcCCcEEEeec
Q psy7275 3 DTGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADS--SYISN---LTRSMSLA---LD--EF---YSTLKVVGFSS 69 (150)
Q Consensus 3 k~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~--~y~~~---L~~slsl~---l~--ef---y~~l~vv~VSA 69 (150)
+.++|+|+|.||+|+..........+.++.-...+.... ..... -.....+. -. +| -..+.+++.|+
T Consensus 107 ~~~~pvliv~NK~Dl~~a~~~~~i~~~le~ei~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~f~f~~~~~~v~~~~~s~ 186 (203)
T cd04105 107 KNKIPVLIACNKQDLFTAKPAKKIKEQLEKELNTLRESRSKSLSSLDGDEGSKESLGDKGGKSFEFDQLEGKVEFLEGSV 186 (203)
T ss_pred cCCCCEEEEecchhhcccCCHHHHHHHHHHHHHHHHHHHhccccccccccccccccccccCcceeeccCceeEEEEEeEE
Confidence 357899999999998765443333333333222222110 00000 00000000 00 11 12357899999
Q ss_pred CCCC-CHHHHHHHHHH
Q psy7275 70 VSGE-GTEELLQLIKL 84 (150)
Q Consensus 70 ~TGe-GideL~~~I~e 84 (150)
..+. |++.+.+.|.+
T Consensus 187 ~~~~~~~~~~~~w~~~ 202 (203)
T cd04105 187 KVDGGGIDGWEEWIDE 202 (203)
T ss_pred ecCCCChHhHHHHHhh
Confidence 8887 68888887764
No 252
>KOG0394|consensus
Probab=95.58 E-value=0.028 Score=45.67 Aligned_cols=28 Identities=11% Similarity=0.076 Sum_probs=24.2
Q ss_pred cCCcEEEeecCCCCCHHHHHHHHHHHHH
Q psy7275 60 STLKVVGFSSVSGEGTEELLQLIKLAGE 87 (150)
Q Consensus 60 ~~l~vv~VSA~TGeGideL~~~I~e~~~ 87 (150)
.+++.+.+||+.+.++++-|..+.+.+-
T Consensus 151 gnipyfEtSAK~~~NV~~AFe~ia~~aL 178 (210)
T KOG0394|consen 151 GNIPYFETSAKEATNVDEAFEEIARRAL 178 (210)
T ss_pred CCceeEEecccccccHHHHHHHHHHHHH
Confidence 4689999999999999999988877653
No 253
>KOG0093|consensus
Probab=95.58 E-value=0.024 Score=44.91 Aligned_cols=62 Identities=8% Similarity=-0.036 Sum_probs=41.8
Q ss_pred CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHH
Q psy7275 5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKL 84 (150)
Q Consensus 5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e 84 (150)
..|+|+|-||||+-+..... .|.-+ .|...| +++++..||+...++.++|+++..
T Consensus 126 naqvilvgnKCDmd~eRvis-----~e~g~-----------~l~~~L---------GfefFEtSaK~NinVk~~Fe~lv~ 180 (193)
T KOG0093|consen 126 NAQVILVGNKCDMDSERVIS-----HERGR-----------QLADQL---------GFEFFETSAKENINVKQVFERLVD 180 (193)
T ss_pred CceEEEEecccCCccceeee-----HHHHH-----------HHHHHh---------ChHHhhhcccccccHHHHHHHHHH
Confidence 57999999999986544320 01000 011111 357778999999999999999988
Q ss_pred HHHHHHh
Q psy7275 85 AGEDYEK 91 (150)
Q Consensus 85 ~~~ey~~ 91 (150)
++.+-..
T Consensus 181 ~Ic~kms 187 (193)
T KOG0093|consen 181 IICDKMS 187 (193)
T ss_pred HHHHHhh
Confidence 7765543
No 254
>PRK13351 elongation factor G; Reviewed
Probab=95.54 E-value=0.025 Score=52.54 Aligned_cols=25 Identities=24% Similarity=0.089 Sum_probs=21.9
Q ss_pred CcEEEeecCCCCCHHHHHHHHHHHH
Q psy7275 62 LKVVGFSSVSGEGTEELLQLIKLAG 86 (150)
Q Consensus 62 l~vv~VSA~TGeGideL~~~I~e~~ 86 (150)
++++..||++|.|++.|+++|...+
T Consensus 253 ~PV~~gSA~~~~Gv~~LLd~I~~~l 277 (687)
T PRK13351 253 VPVLFGSALKNIGIEPLLDAVVDYL 277 (687)
T ss_pred EEEEecccCcCccHHHHHHHHHHHC
Confidence 4677789999999999999998866
No 255
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=95.51 E-value=0.0083 Score=49.09 Aligned_cols=100 Identities=14% Similarity=0.158 Sum_probs=54.7
Q ss_pred CCCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHH
Q psy7275 3 DTGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLI 82 (150)
Q Consensus 3 k~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I 82 (150)
..++|.++|+||+|....++ +...+.+. +.|....-.+.++..+|.|+..+.+.+
T Consensus 114 ~~~~p~iivvNK~D~~~~~~--------~~~~~~l~-----------------~~~~~~~~~~~ip~~~~~~~~~~vd~~ 168 (268)
T cd04170 114 EAGIPRIIFINKMDRERADF--------DKTLAALQ-----------------EAFGRPVVPLQLPIGEGDDFKGVVDLL 168 (268)
T ss_pred HcCCCEEEEEECCccCCCCH--------HHHHHHHH-----------------HHhCCCeEEEEecccCCCceeEEEEcc
Confidence 35789999999999876543 11112221 112122233455678888887777777
Q ss_pred HHHHHHH-----------HhhhHHHHHHHHHHHHHHHHHHHHHhHhhCCCCCCCCc
Q psy7275 83 KLAGEDY-----------EKNYRVEWIRLRDEKAKSEQLEKREQHFALPTPQPLWA 127 (150)
Q Consensus 83 ~e~~~ey-----------~~~y~pe~e~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 127 (150)
....-.| ..++..+.++.+.+--+.-...-++-++++..+-.+++
T Consensus 169 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~e~~a~~dd~l~e~yl~~~~~~~ 224 (268)
T cd04170 169 TEKAYIYSPGAPSEEIEIPEELKEEVAEAREELLEAVAETDDELMEKYLEGGELTE 224 (268)
T ss_pred cCEEEEccCCCcceeccCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHhCCCCCCH
Confidence 5443333 12344444444444444444555666666666655544
No 256
>KOG0076|consensus
Probab=95.49 E-value=0.011 Score=47.50 Aligned_cols=64 Identities=22% Similarity=0.159 Sum_probs=41.3
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK 83 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~ 83 (150)
.+.|.++..||-|+.+.-.+.|.= ..+. . ..+ .--+..++.+|||++|+|+++=...+.
T Consensus 125 eg~p~L~lankqd~q~~~~~~El~-------~~~~----~-~e~---------~~~rd~~~~pvSal~gegv~egi~w~v 183 (197)
T KOG0076|consen 125 EGAPVLVLANKQDLQNAMEAAELD-------GVFG----L-AEL---------IPRRDNPFQPVSALTGEGVKEGIEWLV 183 (197)
T ss_pred cCCchhhhcchhhhhhhhhHHHHH-------HHhh----h-hhh---------cCCccCccccchhhhcccHHHHHHHHH
Confidence 367999999999997765432211 1110 0 000 001346889999999999999888887
Q ss_pred HHHHH
Q psy7275 84 LAGED 88 (150)
Q Consensus 84 e~~~e 88 (150)
...+.
T Consensus 184 ~~~~k 188 (197)
T KOG0076|consen 184 KKLEK 188 (197)
T ss_pred HHHhh
Confidence 76643
No 257
>KOG0395|consensus
Probab=95.39 E-value=0.066 Score=42.66 Aligned_cols=60 Identities=12% Similarity=0.043 Sum_probs=39.7
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK 83 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~ 83 (150)
..+|+|+|.||+|+........ .+... + ...+ ...++.+||+...+++++|..+.
T Consensus 107 ~~~PivlVGNK~Dl~~~R~V~~--------eeg~~--------l--------a~~~-~~~f~E~Sak~~~~v~~~F~~L~ 161 (196)
T KOG0395|consen 107 DDVPIILVGNKCDLERERQVSE--------EEGKA--------L--------ARSW-GCAFIETSAKLNYNVDEVFYELV 161 (196)
T ss_pred CCCCEEEEEEcccchhccccCH--------HHHHH--------H--------HHhc-CCcEEEeeccCCcCHHHHHHHHH
Confidence 3579999999999965322210 01000 1 1112 35699999999999999999887
Q ss_pred HHHHH
Q psy7275 84 LAGED 88 (150)
Q Consensus 84 e~~~e 88 (150)
.....
T Consensus 162 r~~~~ 166 (196)
T KOG0395|consen 162 REIRL 166 (196)
T ss_pred HHHHh
Confidence 76543
No 258
>COG2229 Predicted GTPase [General function prediction only]
Probab=95.26 E-value=0.054 Score=43.60 Aligned_cols=55 Identities=22% Similarity=0.355 Sum_probs=40.2
Q ss_pred CCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHHH
Q psy7275 6 FPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKLA 85 (150)
Q Consensus 6 lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e~ 85 (150)
+|++|+.||.|+-+... ++..++++..+ ..++++|+++|..|+|..+.+..+...
T Consensus 122 ip~vVa~NK~DL~~a~p-------pe~i~e~l~~~------------------~~~~~vi~~~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 122 IPVVVAINKQDLFDALP-------PEKIREALKLE------------------LLSVPVIEIDATEGEGARDQLDVLLLK 176 (187)
T ss_pred CCEEEEeeccccCCCCC-------HHHHHHHHHhc------------------cCCCceeeeecccchhHHHHHHHHHhh
Confidence 89999999999976533 22334444310 036899999999999999888877654
No 259
>KOG0073|consensus
Probab=95.24 E-value=0.095 Score=41.91 Aligned_cols=57 Identities=26% Similarity=0.267 Sum_probs=35.1
Q ss_pred CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhh--cCCcEEEeecCCCCCHHHHHHHH
Q psy7275 5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFY--STLKVVGFSSVSGEGTEELLQLI 82 (150)
Q Consensus 5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy--~~l~vv~VSA~TGeGideL~~~I 82 (150)
+.|++++.||.|+.+.-.. +++..++ -|++.. .+.+++.+||.||+|+.+=+..+
T Consensus 117 G~~~Lvlank~dl~~~l~~-------~~i~~~~----------------~L~~l~ks~~~~l~~cs~~tge~l~~gidWL 173 (185)
T KOG0073|consen 117 GAPLLVLANKQDLPGALSL-------EEISKAL----------------DLEELAKSHHWRLVKCSAVTGEDLLEGIDWL 173 (185)
T ss_pred CCceEEEEecCcCccccCH-------HHHHHhh----------------CHHHhccccCceEEEEeccccccHHHHHHHH
Confidence 5699999999998743221 1111221 123332 24699999999997766555544
Q ss_pred HH
Q psy7275 83 KL 84 (150)
Q Consensus 83 ~e 84 (150)
..
T Consensus 174 ~~ 175 (185)
T KOG0073|consen 174 CD 175 (185)
T ss_pred HH
Confidence 33
No 260
>KOG0088|consensus
Probab=95.24 E-value=0.062 Score=43.10 Aligned_cols=58 Identities=17% Similarity=0.134 Sum_probs=37.0
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK 83 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~ 83 (150)
..+-.++|-||+|+-..... ..+++.. |+.+. +...+..||+...|+.++|..+.
T Consensus 117 nei~l~IVGNKiDLEeeR~V--------t~qeAe~----YAesv-------------GA~y~eTSAk~N~Gi~elFe~Lt 171 (218)
T KOG0088|consen 117 NEIELLIVGNKIDLEEERQV--------TRQEAEA----YAESV-------------GALYMETSAKDNVGISELFESLT 171 (218)
T ss_pred CeeEEEEecCcccHHHhhhh--------hHHHHHH----HHHhh-------------chhheecccccccCHHHHHHHHH
Confidence 34678999999998433221 1223322 21111 34667899999999999999886
Q ss_pred HHH
Q psy7275 84 LAG 86 (150)
Q Consensus 84 e~~ 86 (150)
...
T Consensus 172 ~~M 174 (218)
T KOG0088|consen 172 AKM 174 (218)
T ss_pred HHH
Confidence 544
No 261
>KOG0084|consensus
Probab=95.20 E-value=0.046 Score=44.51 Aligned_cols=57 Identities=16% Similarity=0.156 Sum_probs=36.7
Q ss_pred CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCc-EEEeecCCCCCHHHHHHHHH
Q psy7275 5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLK-VVGFSSVSGEGTEELLQLIK 83 (150)
Q Consensus 5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~-vv~VSA~TGeGideL~~~I~ 83 (150)
..|.++|.||+|+.++... .++ ++-. | .. + .+++ +..+||+++.++++.|..+.
T Consensus 114 ~v~~lLVGNK~Dl~~~~~v-----~~~---~a~~----f----a~-------~--~~~~~f~ETSAK~~~NVe~~F~~la 168 (205)
T KOG0084|consen 114 NVPKLLVGNKCDLTEKRVV-----STE---EAQE----F----AD-------E--LGIPIFLETSAKDSTNVEDAFLTLA 168 (205)
T ss_pred CCCeEEEeeccccHhheec-----CHH---HHHH----H----HH-------h--cCCcceeecccCCccCHHHHHHHHH
Confidence 3699999999998654322 111 1100 0 00 0 1345 89999999999998888776
Q ss_pred HHH
Q psy7275 84 LAG 86 (150)
Q Consensus 84 e~~ 86 (150)
..+
T Consensus 169 ~~l 171 (205)
T KOG0084|consen 169 KEL 171 (205)
T ss_pred HHH
Confidence 544
No 262
>KOG0072|consensus
Probab=95.12 E-value=0.048 Score=43.06 Aligned_cols=26 Identities=23% Similarity=0.380 Sum_probs=23.3
Q ss_pred CcEEEeecCCCCCHHHHHHHHHHHHH
Q psy7275 62 LKVVGFSSVSGEGTEELLQLIKLAGE 87 (150)
Q Consensus 62 l~vv~VSA~TGeGideL~~~I~e~~~ 87 (150)
..+|..||.+|+|+|+.++.+++-+.
T Consensus 154 ~~Iv~tSA~kg~Gld~~~DWL~~~l~ 179 (182)
T KOG0072|consen 154 WQIVKTSAVKGEGLDPAMDWLQRPLK 179 (182)
T ss_pred eEEEeeccccccCCcHHHHHHHHHHh
Confidence 58899999999999999999988664
No 263
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=95.08 E-value=0.034 Score=51.87 Aligned_cols=25 Identities=20% Similarity=0.115 Sum_probs=21.5
Q ss_pred CcEEEeecCCCCCHHHHHHHHHHHH
Q psy7275 62 LKVVGFSSVSGEGTEELLQLIKLAG 86 (150)
Q Consensus 62 l~vv~VSA~TGeGideL~~~I~e~~ 86 (150)
++++..||.+|.|++.|+++|...+
T Consensus 254 ~PV~~gSa~~~~Gv~~LLd~I~~~l 278 (689)
T TIGR00484 254 FPVLCGSAFKNKGVQLLLDAVVDYL 278 (689)
T ss_pred EEEEeccccCCccHHHHHHHHHHHC
Confidence 3677779999999999999998766
No 264
>KOG1143|consensus
Probab=95.01 E-value=0.072 Score=47.86 Aligned_cols=79 Identities=19% Similarity=0.280 Sum_probs=44.0
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhc--hhhhhhhHHHHHHHHHHhhcC-CcEEEeecCCCCCHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEAD--SSYISNLTRSMSLALDEFYST-LKVVGFSSVSGEGTEELLQ 80 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e--~~y~~~L~~slsl~l~efy~~-l~vv~VSA~TGeGideL~~ 80 (150)
+++||.++++|+|+++..-.+.-++|.+.+..-..-- .-.+.+--...+-.-+..-.+ .+++.||+++|+|++=|..
T Consensus 302 L~iPfFvlvtK~Dl~~~~~~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~ 381 (591)
T KOG1143|consen 302 LNIPFFVLVTKMDLVDRQGLKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRT 381 (591)
T ss_pred hCCCeEEEEEeeccccchhHHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHHH
Confidence 5789999999999999876665566655443322100 000000000000000011122 4999999999999976655
Q ss_pred HH
Q psy7275 81 LI 82 (150)
Q Consensus 81 ~I 82 (150)
.+
T Consensus 382 fL 383 (591)
T KOG1143|consen 382 FL 383 (591)
T ss_pred HH
Confidence 44
No 265
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=94.90 E-value=0.062 Score=48.96 Aligned_cols=25 Identities=20% Similarity=0.065 Sum_probs=22.7
Q ss_pred CcEEEeecCCCCCHHHHHHHHHHHH
Q psy7275 62 LKVVGFSSVSGEGTEELLQLIKLAG 86 (150)
Q Consensus 62 l~vv~VSA~TGeGideL~~~I~e~~ 86 (150)
.+++..||.+|.|+..|+++|...+
T Consensus 249 ~PV~~GSA~~n~Gv~~LLd~i~~~~ 273 (526)
T PRK00741 249 TPVFFGSALNNFGVQEFLDAFVEWA 273 (526)
T ss_pred EEEEEeecccCcCHHHHHHHHHHHC
Confidence 4789999999999999999998876
No 266
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=94.65 E-value=0.019 Score=47.78 Aligned_cols=20 Identities=15% Similarity=0.262 Sum_probs=16.1
Q ss_pred CCCCCEEEeeecCCCCCchh
Q psy7275 3 DTGFPYTELVVGIDIVNHKY 22 (150)
Q Consensus 3 k~~lP~IlV~NKiDl~~~~~ 22 (150)
+.++|+|+|+||+|+.+.++
T Consensus 114 ~~~~p~ivviNK~D~~~a~~ 133 (270)
T cd01886 114 RYNVPRIAFVNKMDRTGADF 133 (270)
T ss_pred HcCCCEEEEEECCCCCCCCH
Confidence 45789999999999876543
No 267
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=94.44 E-value=0.062 Score=48.06 Aligned_cols=56 Identities=16% Similarity=0.257 Sum_probs=32.9
Q ss_pred CEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhc-CCcEEEeecCCCCCHHHHH
Q psy7275 7 PYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYS-TLKVVGFSSVSGEGTEELL 79 (150)
Q Consensus 7 P~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~-~l~vv~VSA~TGeGideL~ 79 (150)
-.|+++||+|..+-+. +.|+.....+ +.|.+.+ .|.. +++++||||.+|.++.+--
T Consensus 147 ~lIVavNKMD~v~wde-----~rf~ei~~~v-------~~l~k~~-----G~~~~~v~FIPiSg~~G~Nl~~~s 203 (428)
T COG5256 147 QLIVAVNKMDLVSWDE-----ERFEEIVSEV-------SKLLKMV-----GYNPKDVPFIPISGFKGDNLTKKS 203 (428)
T ss_pred eEEEEEEcccccccCH-----HHHHHHHHHH-------HHHHHHc-----CCCccCCeEEecccccCCcccccC
Confidence 3789999999876221 1233222222 1132222 2222 4789999999999986543
No 268
>COG1084 Predicted GTPase [General function prediction only]
Probab=94.40 E-value=0.079 Score=46.22 Aligned_cols=56 Identities=20% Similarity=0.286 Sum_probs=38.5
Q ss_pred CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHH
Q psy7275 5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKL 84 (150)
Q Consensus 5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e 84 (150)
..|+|+|+||+|+.+.+...+ .+ ..+. .+ .....+.+|+..|.|.+.+...+..
T Consensus 280 ~~p~v~V~nK~D~~~~e~~~~----~~---~~~~-----------------~~--~~~~~~~~~~~~~~~~d~~~~~v~~ 333 (346)
T COG1084 280 KAPIVVVINKIDIADEEKLEE----IE---ASVL-----------------EE--GGEEPLKISATKGCGLDKLREEVRK 333 (346)
T ss_pred CCCeEEEEecccccchhHHHH----HH---HHHH-----------------hh--ccccccceeeeehhhHHHHHHHHHH
Confidence 479999999999976554311 11 1111 01 1245789999999999999988887
Q ss_pred HH
Q psy7275 85 AG 86 (150)
Q Consensus 85 ~~ 86 (150)
.+
T Consensus 334 ~a 335 (346)
T COG1084 334 TA 335 (346)
T ss_pred Hh
Confidence 75
No 269
>PRK12739 elongation factor G; Reviewed
Probab=94.35 E-value=0.066 Score=50.03 Aligned_cols=25 Identities=20% Similarity=0.146 Sum_probs=22.0
Q ss_pred CcEEEeecCCCCCHHHHHHHHHHHH
Q psy7275 62 LKVVGFSSVSGEGTEELLQLIKLAG 86 (150)
Q Consensus 62 l~vv~VSA~TGeGideL~~~I~e~~ 86 (150)
++++..||.+|.|++.|++.|...+
T Consensus 253 ~Pv~~gSa~~~~Gv~~LLd~I~~~l 277 (691)
T PRK12739 253 FPVLCGSAFKNKGVQPLLDAVVDYL 277 (691)
T ss_pred EEEEeccccCCccHHHHHHHHHHHC
Confidence 3677889999999999999998866
No 270
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=94.16 E-value=0.19 Score=41.64 Aligned_cols=24 Identities=25% Similarity=0.130 Sum_probs=21.0
Q ss_pred CcEEEeecCCCCCHHHHHHHHHHH
Q psy7275 62 LKVVGFSSVSGEGTEELLQLIKLA 85 (150)
Q Consensus 62 l~vv~VSA~TGeGideL~~~I~e~ 85 (150)
+|++..||.++.|+..|+++|...
T Consensus 240 ~Pv~~gsa~~~~Gv~~Lld~i~~~ 263 (267)
T cd04169 240 TPVFFGSALNNFGVQELLDALVDL 263 (267)
T ss_pred EEEEecccccCcCHHHHHHHHHHH
Confidence 378888999999999999998764
No 271
>PRK00007 elongation factor G; Reviewed
Probab=94.13 E-value=0.058 Score=50.46 Aligned_cols=25 Identities=20% Similarity=0.143 Sum_probs=21.7
Q ss_pred CcEEEeecCCCCCHHHHHHHHHHHH
Q psy7275 62 LKVVGFSSVSGEGTEELLQLIKLAG 86 (150)
Q Consensus 62 l~vv~VSA~TGeGideL~~~I~e~~ 86 (150)
++++..||.++.|++.|++.|...+
T Consensus 255 ~Pv~~gSa~~~~Gv~~LLd~I~~~l 279 (693)
T PRK00007 255 VPVLCGSAFKNKGVQPLLDAVVDYL 279 (693)
T ss_pred EEEEecccccCcCHHHHHHHHHHHC
Confidence 4677779999999999999998866
No 272
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=93.90 E-value=0.38 Score=37.11 Aligned_cols=29 Identities=14% Similarity=0.099 Sum_probs=24.0
Q ss_pred cEEEeecC--CCCCHHHHHHHHHHHHHHHHh
Q psy7275 63 KVVGFSSV--SGEGTEELLQLIKLAGEDYEK 91 (150)
Q Consensus 63 ~vv~VSA~--TGeGideL~~~I~e~~~ey~~ 91 (150)
.++.+||. ++.|+++++..+...+.+-..
T Consensus 159 ~~~~~s~~~~~~~~v~~~~~~~~~~~~~~~~ 189 (219)
T COG1100 159 ALLETSAKSLTGPNVNELFKELLRKLLEEIE 189 (219)
T ss_pred ceeEeecccCCCcCHHHHHHHHHHHHHHhhh
Confidence 48899999 999999999998887754433
No 273
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=93.89 E-value=0.17 Score=40.70 Aligned_cols=53 Identities=17% Similarity=0.288 Sum_probs=30.5
Q ss_pred CCCCEE-EeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCH
Q psy7275 4 TGFPYT-ELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGT 75 (150)
Q Consensus 4 ~~lP~I-lV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGi 75 (150)
.++|.+ +|+||+|+.+.... ++.....+.. . ...+|....++++|||++.--+
T Consensus 131 ~g~p~vi~VvnK~D~~~~~~~------~~~~~~~l~~----------~---~~~~~~~~~ki~~iSa~~~~~~ 184 (225)
T cd01882 131 HGFPRVMGVLTHLDLFKKNKT------LRKTKKRLKH----------R---FWTEVYQGAKLFYLSGIVHGRY 184 (225)
T ss_pred cCCCeEEEEEeccccCCcHHH------HHHHHHHHHH----------H---HHHhhCCCCcEEEEeeccCCCC
Confidence 467855 59999998754321 1111122210 0 1234556779999999998443
No 274
>KOG4252|consensus
Probab=93.81 E-value=0.075 Score=43.40 Aligned_cols=58 Identities=12% Similarity=0.026 Sum_probs=38.9
Q ss_pred CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHH
Q psy7275 5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKL 84 (150)
Q Consensus 5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e 84 (150)
++|.++|-||||+++...+.. + ..+. +.+- -+.+.+.+|++...++-..|..+.+
T Consensus 124 ~IPtV~vqNKIDlveds~~~~-----~-evE~----------lak~---------l~~RlyRtSvked~NV~~vF~YLae 178 (246)
T KOG4252|consen 124 RIPTVFVQNKIDLVEDSQMDK-----G-EVEG----------LAKK---------LHKRLYRTSVKEDFNVMHVFAYLAE 178 (246)
T ss_pred cCCeEEeeccchhhHhhhcch-----H-HHHH----------HHHH---------hhhhhhhhhhhhhhhhHHHHHHHHH
Confidence 689999999999986554311 0 0011 1111 1457789999999999999888876
Q ss_pred HHH
Q psy7275 85 AGE 87 (150)
Q Consensus 85 ~~~ 87 (150)
.+.
T Consensus 179 K~~ 181 (246)
T KOG4252|consen 179 KLT 181 (246)
T ss_pred HHH
Confidence 653
No 275
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=93.46 E-value=0.17 Score=46.48 Aligned_cols=65 Identities=22% Similarity=0.216 Sum_probs=41.1
Q ss_pred CCCCCEEEeeecCCCCCchhhHHHhhc--HHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCC-------
Q psy7275 3 DTGFPYTELVVGIDIVNHKYAIEWMQD--FEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGE------- 73 (150)
Q Consensus 3 k~~lP~IlV~NKiDl~~~~~~~ewm~D--~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGe------- 73 (150)
+.+++.|+|+||+|..++.. +|.-| |+-|.+ +..+ +-.-.++++.-||..|.
T Consensus 118 ~~gL~PIVVvNKiDrp~Arp--~~Vvd~vfDLf~~-L~A~----------------deQLdFPivYAS~~~G~a~~~~~~ 178 (603)
T COG1217 118 ALGLKPIVVINKIDRPDARP--DEVVDEVFDLFVE-LGAT----------------DEQLDFPIVYASARNGTASLDPED 178 (603)
T ss_pred HcCCCcEEEEeCCCCCCCCH--HHHHHHHHHHHHH-hCCC----------------hhhCCCcEEEeeccCceeccCccc
Confidence 46889999999999876543 34322 222222 1111 11225799999999885
Q ss_pred ---CHHHHHHHHHHHH
Q psy7275 74 ---GTEELLQLIKLAG 86 (150)
Q Consensus 74 ---GideL~~~I~e~~ 86 (150)
.+..||+.|.+.+
T Consensus 179 ~~~~m~pLfe~I~~hv 194 (603)
T COG1217 179 EADDMAPLFETILDHV 194 (603)
T ss_pred cccchhHHHHHHHHhC
Confidence 3777888877765
No 276
>KOG0086|consensus
Probab=93.28 E-value=0.19 Score=40.17 Aligned_cols=56 Identities=20% Similarity=0.121 Sum_probs=37.6
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhh--cCCcEEEeecCCCCCHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFY--STLKVVGFSSVSGEGTEELLQL 81 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy--~~l~vv~VSA~TGeGideL~~~ 81 (150)
..+-+|++-||.|+.+.... .|.++-. |. +.+-+...||+||++++|-|-.
T Consensus 113 ~nIvviL~GnKkDL~~~R~V--------tflEAs~-------------------FaqEnel~flETSa~TGeNVEEaFl~ 165 (214)
T KOG0086|consen 113 PNIVVILCGNKKDLDPEREV--------TFLEASR-------------------FAQENELMFLETSALTGENVEEAFLK 165 (214)
T ss_pred CcEEEEEeCChhhcChhhhh--------hHHHHHh-------------------hhcccceeeeeecccccccHHHHHHH
Confidence 34567888999999765432 2333322 22 2467889999999999987776
Q ss_pred HHHHH
Q psy7275 82 IKLAG 86 (150)
Q Consensus 82 I~e~~ 86 (150)
+...+
T Consensus 166 c~~tI 170 (214)
T KOG0086|consen 166 CARTI 170 (214)
T ss_pred HHHHH
Confidence 65544
No 277
>KOG0098|consensus
Probab=93.17 E-value=0.15 Score=41.72 Aligned_cols=55 Identities=16% Similarity=0.102 Sum_probs=35.9
Q ss_pred CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHH
Q psy7275 5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKL 84 (150)
Q Consensus 5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e 84 (150)
.+-++++-||+||.......+ ++=++|.+ + ..+.+...||+||+|++|.|.-+..
T Consensus 111 NmvImLiGNKsDL~~rR~Vs~--EEGeaFA~---------------------e--hgLifmETSakt~~~VEEaF~nta~ 165 (216)
T KOG0098|consen 111 NMVIMLIGNKSDLEARREVSK--EEGEAFAR---------------------E--HGLIFMETSAKTAENVEEAFINTAK 165 (216)
T ss_pred CcEEEEEcchhhhhccccccH--HHHHHHHH---------------------H--cCceeehhhhhhhhhHHHHHHHHHH
Confidence 456889999999976654311 01112221 1 2567779999999999998866543
No 278
>KOG0458|consensus
Probab=93.06 E-value=0.16 Score=47.19 Aligned_cols=54 Identities=31% Similarity=0.433 Sum_probs=30.8
Q ss_pred CEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhh-cCCcEEEeecCCCCCHH
Q psy7275 7 PYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFY-STLKVVGFSSVSGEGTE 76 (150)
Q Consensus 7 P~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy-~~l~vv~VSA~TGeGid 76 (150)
-.|+++||+|+++ |-+| .|++.... ..+.|..+. .|. .++.+||||+.+|+|+-
T Consensus 317 qlivaiNKmD~V~------Wsq~--RF~eIk~~---l~~fL~~~~-----gf~es~v~FIPiSGl~GeNL~ 371 (603)
T KOG0458|consen 317 QLIVAINKMDLVS------WSQD--RFEEIKNK---LSSFLKESC-----GFKESSVKFIPISGLSGENLI 371 (603)
T ss_pred eEEEEeecccccC------ccHH--HHHHHHHH---HHHHHHHhc-----CcccCCcceEecccccCCccc
Confidence 3789999999865 4322 23332211 011111222 122 34699999999999974
No 279
>KOG0087|consensus
Probab=92.66 E-value=0.25 Score=40.71 Aligned_cols=55 Identities=15% Similarity=0.109 Sum_probs=36.4
Q ss_pred CCCCEEEeeecCCCCCchhh-HHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYA-IEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLI 82 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~-~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I 82 (150)
..+++++|-||+||...... .+ |-..|+ | ..++.++.+||..+.+++..|..+
T Consensus 118 ~nivimLvGNK~DL~~lraV~te---~~k~~A----------------------e-~~~l~f~EtSAl~~tNVe~aF~~~ 171 (222)
T KOG0087|consen 118 SNIVIMLVGNKSDLNHLRAVPTE---DGKAFA----------------------E-KEGLFFLETSALDATNVEKAFERV 171 (222)
T ss_pred CCeEEEEeecchhhhhccccchh---hhHhHH----------------------H-hcCceEEEecccccccHHHHHHHH
Confidence 57899999999998652111 00 000111 1 136899999999999999988655
Q ss_pred HH
Q psy7275 83 KL 84 (150)
Q Consensus 83 ~e 84 (150)
..
T Consensus 172 l~ 173 (222)
T KOG0087|consen 172 LT 173 (222)
T ss_pred HH
Confidence 43
No 280
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=92.53 E-value=0.21 Score=40.50 Aligned_cols=16 Identities=13% Similarity=0.059 Sum_probs=13.8
Q ss_pred CCCCCEEEeeecCCCC
Q psy7275 3 DTGFPYTELVVGIDIV 18 (150)
Q Consensus 3 k~~lP~IlV~NKiDl~ 18 (150)
+.++|+|+|+||+|+.
T Consensus 123 ~~~~p~ilviNKiD~~ 138 (222)
T cd01885 123 KERVKPVLVINKIDRL 138 (222)
T ss_pred HcCCCEEEEEECCCcc
Confidence 3578999999999985
No 281
>KOG1490|consensus
Probab=92.49 E-value=0.23 Score=45.80 Aligned_cols=55 Identities=18% Similarity=0.155 Sum_probs=35.6
Q ss_pred CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHH
Q psy7275 5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQL 81 (150)
Q Consensus 5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~ 81 (150)
..|+|+|+||+|+..++.+.+ .-.++.+.+. ++ .+++++..|..+-+|+-++...
T Consensus 281 NK~~IlvlNK~D~m~~edL~~---~~~~ll~~~~-----------------~~--~~v~v~~tS~~~eegVm~Vrt~ 335 (620)
T KOG1490|consen 281 NKVTILVLNKIDAMRPEDLDQ---KNQELLQTII-----------------DD--GNVKVVQTSCVQEEGVMDVRTT 335 (620)
T ss_pred CCceEEEeecccccCccccCH---HHHHHHHHHH-----------------hc--cCceEEEecccchhceeeHHHH
Confidence 459999999999988766421 1111111111 11 2478999999999998776543
No 282
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=91.98 E-value=0.71 Score=42.17 Aligned_cols=25 Identities=12% Similarity=0.012 Sum_probs=22.3
Q ss_pred CcEEEeecCCCCCHHHHHHHHHHHH
Q psy7275 62 LKVVGFSSVSGEGTEELLQLIKLAG 86 (150)
Q Consensus 62 l~vv~VSA~TGeGideL~~~I~e~~ 86 (150)
.+++.-||.++.|++.|++.|...+
T Consensus 250 ~PV~~GSA~~n~Gv~~LLd~i~~~~ 274 (527)
T TIGR00503 250 TPVFFGTALGNFGVDHFLDGLLQWA 274 (527)
T ss_pred eEEEEeecccCccHHHHHHHHHHHC
Confidence 3778889999999999999998876
No 283
>KOG0081|consensus
Probab=91.97 E-value=0.62 Score=37.48 Aligned_cols=57 Identities=19% Similarity=0.175 Sum_probs=36.8
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK 83 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~ 83 (150)
..-.+|++-||+|+.+.....+ .++. .|.+-| .++.+..||.||.++++-.+.+.
T Consensus 123 E~PDivlcGNK~DL~~~R~Vs~--------~qa~----------------~La~ky-glPYfETSA~tg~Nv~kave~Ll 177 (219)
T KOG0081|consen 123 ENPDIVLCGNKADLEDQRVVSE--------DQAA----------------ALADKY-GLPYFETSACTGTNVEKAVELLL 177 (219)
T ss_pred CCCCEEEEcCccchhhhhhhhH--------HHHH----------------HHHHHh-CCCeeeeccccCcCHHHHHHHHH
Confidence 3445889999999965443311 0111 122324 69999999999999987666654
Q ss_pred HH
Q psy7275 84 LA 85 (150)
Q Consensus 84 e~ 85 (150)
..
T Consensus 178 dl 179 (219)
T KOG0081|consen 178 DL 179 (219)
T ss_pred HH
Confidence 43
No 284
>KOG0466|consensus
Probab=91.88 E-value=0.13 Score=45.17 Aligned_cols=67 Identities=13% Similarity=0.102 Sum_probs=46.6
Q ss_pred CEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHHHH
Q psy7275 7 PYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKLAG 86 (150)
Q Consensus 7 P~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e~~ 86 (150)
-+|++-||+|+...+.+.|- +++.+..+.. ..-.+.++++|||.-+.++|-+.+.|.+.+
T Consensus 181 hiiilQNKiDli~e~~A~eq---~e~I~kFi~~-----------------t~ae~aPiiPisAQlkyNId~v~eyivkkI 240 (466)
T KOG0466|consen 181 HIIILQNKIDLIKESQALEQ---HEQIQKFIQG-----------------TVAEGAPIIPISAQLKYNIDVVCEYIVKKI 240 (466)
T ss_pred eEEEEechhhhhhHHHHHHH---HHHHHHHHhc-----------------cccCCCceeeehhhhccChHHHHHHHHhcC
Confidence 47888999999988776543 3333433321 112356999999999999999999888766
Q ss_pred HHHHhhh
Q psy7275 87 EDYEKNY 93 (150)
Q Consensus 87 ~ey~~~y 93 (150)
..=.++|
T Consensus 241 PvPvRdf 247 (466)
T KOG0466|consen 241 PVPVRDF 247 (466)
T ss_pred CCCcccc
Confidence 5444443
No 285
>KOG1487|consensus
Probab=91.40 E-value=0.15 Score=43.80 Aligned_cols=51 Identities=20% Similarity=0.164 Sum_probs=39.3
Q ss_pred CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHH
Q psy7275 5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKL 84 (150)
Q Consensus 5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e 84 (150)
-+|.|.|+||+|-.+-+.. +=.|.....++|||-+|.++|+|++.+.+
T Consensus 231 yVp~iyvLNkIdsISiEEL--------------------------------dii~~iphavpISA~~~wn~d~lL~~mwe 278 (358)
T KOG1487|consen 231 YVPCIYVLNKIDSISIEEL--------------------------------DIIYTIPHAVPISAHTGWNFDKLLEKMWE 278 (358)
T ss_pred eeeeeeeecccceeeeecc--------------------------------ceeeeccceeecccccccchHHHHHHHhh
Confidence 4699999999996554431 11245568899999999999999999887
Q ss_pred HHH
Q psy7275 85 AGE 87 (150)
Q Consensus 85 ~~~ 87 (150)
-..
T Consensus 279 yL~ 281 (358)
T KOG1487|consen 279 YLK 281 (358)
T ss_pred cch
Confidence 654
No 286
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=91.37 E-value=0.55 Score=36.28 Aligned_cols=50 Identities=20% Similarity=0.279 Sum_probs=35.9
Q ss_pred CCEEEeeecCCCCCchhh---HHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHH
Q psy7275 6 FPYTELVVGIDIVNHKYA---IEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLI 82 (150)
Q Consensus 6 lP~IlV~NKiDl~~~~~~---~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I 82 (150)
.|+|-|++|+|+..+... +.|+ -|-. .-+++.+||....|+++|++.+
T Consensus 91 k~vIgvVTK~DLaed~dI~~~~~~L----------------------------~eaG-a~~IF~~s~~d~~gv~~l~~~L 141 (148)
T COG4917 91 KKVIGVVTKADLAEDADISLVKRWL----------------------------REAG-AEPIFETSAVDNQGVEELVDYL 141 (148)
T ss_pred cceEEEEecccccchHhHHHHHHHH----------------------------HHcC-CcceEEEeccCcccHHHHHHHH
Confidence 379999999999753221 2232 1111 3589999999999999999887
Q ss_pred HH
Q psy7275 83 KL 84 (150)
Q Consensus 83 ~e 84 (150)
..
T Consensus 142 ~~ 143 (148)
T COG4917 142 AS 143 (148)
T ss_pred Hh
Confidence 64
No 287
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=91.01 E-value=0.88 Score=35.17 Aligned_cols=63 Identities=14% Similarity=0.142 Sum_probs=39.9
Q ss_pred CCEEEeeecCCCCCchhhHHHhhcH-HHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEe-----ecCCCCCHHHHH
Q psy7275 6 FPYTELVVGIDIVNHKYAIEWMQDF-EVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGF-----SSVSGEGTEELL 79 (150)
Q Consensus 6 lP~IlV~NKiDl~~~~~~~ewm~D~-e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~V-----SA~TGeGideL~ 79 (150)
.++|+|||+.|-.......+|+.+. ..++..+ ... +-+++.+ |+..+.++++|+
T Consensus 117 ~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~------------------~~c--~~r~~~f~~~~~~~~~~~q~~~Ll 176 (196)
T cd01852 117 DHTIVLFTRGDDLEGGTLEDYLENSCEALKRLL------------------EKC--GGRYVAFNNKAKGEEQEQQVKELL 176 (196)
T ss_pred hcEEEEEECccccCCCcHHHHHHhccHHHHHHH------------------HHh--CCeEEEEeCCCCcchhHHHHHHHH
Confidence 4789999999977655444554333 2222222 221 2233344 456788999999
Q ss_pred HHHHHHHHH
Q psy7275 80 QLIKLAGED 88 (150)
Q Consensus 80 ~~I~e~~~e 88 (150)
+.|.+.+.+
T Consensus 177 ~~i~~~~~~ 185 (196)
T cd01852 177 AKVESMVKE 185 (196)
T ss_pred HHHHHHHHh
Confidence 999999987
No 288
>KOG1191|consensus
Probab=90.81 E-value=0.27 Score=45.00 Aligned_cols=61 Identities=21% Similarity=0.140 Sum_probs=38.3
Q ss_pred CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcE-EEeecCCCCCHHHHHHHHH
Q psy7275 5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKV-VGFSSVSGEGTEELLQLIK 83 (150)
Q Consensus 5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~v-v~VSA~TGeGideL~~~I~ 83 (150)
+-|+|+|.||+|+.+.-....|. -+ -|.+. +-.+.+++ +.||++|++|++.|.+++.
T Consensus 389 ~~~~i~~~nk~D~~s~~~~~~~~--------~~----~~~~~----------~~~~~~~i~~~vs~~tkeg~~~L~~all 446 (531)
T KOG1191|consen 389 KQRIILVANKSDLVSKIPEMTKI--------PV----VYPSA----------EGRSVFPIVVEVSCTTKEGCERLSTALL 446 (531)
T ss_pred ccceEEEechhhccCccccccCC--------ce----ecccc----------ccCcccceEEEeeechhhhHHHHHHHHH
Confidence 45899999999998652111221 00 00000 00123444 4599999999999999998
Q ss_pred HHHH
Q psy7275 84 LAGE 87 (150)
Q Consensus 84 e~~~ 87 (150)
+.+.
T Consensus 447 ~~~~ 450 (531)
T KOG1191|consen 447 NIVE 450 (531)
T ss_pred HHHH
Confidence 8764
No 289
>KOG1424|consensus
Probab=90.20 E-value=0.29 Score=45.11 Aligned_cols=38 Identities=24% Similarity=0.398 Sum_probs=29.9
Q ss_pred CEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCC
Q psy7275 7 PYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVS 71 (150)
Q Consensus 7 P~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~T 71 (150)
-.++++||+||++++....|-+-|. -++|++|+-||.-
T Consensus 207 ~~~LLvNKaDLl~~~qr~aWa~YF~---------------------------~~ni~~vf~SA~~ 244 (562)
T KOG1424|consen 207 ANVLLVNKADLLPPEQRVAWAEYFR---------------------------QNNIPVVFFSALA 244 (562)
T ss_pred ceEEEEehhhcCCHHHHHHHHHHHH---------------------------hcCceEEEEeccc
Confidence 3689999999999998889974332 1358999999887
No 290
>KOG0410|consensus
Probab=90.09 E-value=0.17 Score=44.52 Aligned_cols=24 Identities=38% Similarity=0.533 Sum_probs=22.0
Q ss_pred EEEeecCCCCCHHHHHHHHHHHHH
Q psy7275 64 VVGFSSVSGEGTEELLQLIKLAGE 87 (150)
Q Consensus 64 vv~VSA~TGeGideL~~~I~e~~~ 87 (150)
.++|||.||.|+++|.+++..++.
T Consensus 318 ~v~isaltgdgl~el~~a~~~kv~ 341 (410)
T KOG0410|consen 318 DVGISALTGDGLEELLKAEETKVA 341 (410)
T ss_pred ccccccccCccHHHHHHHHHHHhh
Confidence 789999999999999999988764
No 291
>KOG0079|consensus
Probab=89.63 E-value=0.76 Score=36.59 Aligned_cols=58 Identities=14% Similarity=0.067 Sum_probs=39.5
Q ss_pred CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHH
Q psy7275 5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKL 84 (150)
Q Consensus 5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e 84 (150)
.+|-|+|-||.|..+...... + +|- .+..+ .+++++..||+..++++..|..|.+
T Consensus 112 sv~~vLVGNK~d~~~RrvV~t-----~---dAr--------~~A~~---------mgie~FETSaKe~~NvE~mF~cit~ 166 (198)
T KOG0079|consen 112 SVPKVLVGNKNDDPERRVVDT-----E---DAR--------AFALQ---------MGIELFETSAKENENVEAMFHCITK 166 (198)
T ss_pred cccceecccCCCCccceeeeh-----H---HHH--------HHHHh---------cCchheehhhhhcccchHHHHHHHH
Confidence 368899999999865433210 0 110 01111 2689999999999999999999987
Q ss_pred HHH
Q psy7275 85 AGE 87 (150)
Q Consensus 85 ~~~ 87 (150)
.+-
T Consensus 167 qvl 169 (198)
T KOG0079|consen 167 QVL 169 (198)
T ss_pred HHH
Confidence 663
No 292
>KOG0070|consensus
Probab=89.19 E-value=1 Score=36.07 Aligned_cols=60 Identities=22% Similarity=0.207 Sum_probs=39.8
Q ss_pred CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhc-CCcEEEeecCCCCCHHHHHHHHH
Q psy7275 5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYS-TLKVVGFSSVSGEGTEELLQLIK 83 (150)
Q Consensus 5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~-~l~vv~VSA~TGeGideL~~~I~ 83 (150)
..|+++..||.|+.++-.+.+ +.+.+. ++++.. .-.+-+.+|.+|+|+.|-++.+.
T Consensus 118 ~~~llv~aNKqD~~~als~~e-------i~~~L~----------------l~~l~~~~w~iq~~~a~~G~GL~egl~wl~ 174 (181)
T KOG0070|consen 118 NAPLLVFANKQDLPGALSAAE-------ITNKLG----------------LHSLRSRNWHIQSTCAISGEGLYEGLDWLS 174 (181)
T ss_pred CceEEEEechhhccccCCHHH-------HHhHhh----------------hhccCCCCcEEeeccccccccHHHHHHHHH
Confidence 469999999999876533211 112221 222222 23778899999999999999888
Q ss_pred HHHH
Q psy7275 84 LAGE 87 (150)
Q Consensus 84 e~~~ 87 (150)
+.+.
T Consensus 175 ~~~~ 178 (181)
T KOG0070|consen 175 NNLK 178 (181)
T ss_pred HHHh
Confidence 7654
No 293
>KOG0075|consensus
Probab=89.04 E-value=0.89 Score=36.10 Aligned_cols=61 Identities=18% Similarity=0.157 Sum_probs=40.8
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHh-hcCCcEEEeecCCCCCHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEF-YSTLKVVGFSSVSGEGTEELLQLI 82 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~ef-y~~l~vv~VSA~TGeGideL~~~I 82 (150)
+++|+++.-||+|+.++-... ++.+.+. |... -..+-++.||++...+||-..+.+
T Consensus 121 ~gip~LVLGnK~d~~~AL~~~-------~li~rmg----------------L~sitdREvcC~siScke~~Nid~~~~Wl 177 (186)
T KOG0075|consen 121 TGIPLLVLGNKIDLPGALSKI-------ALIERMG----------------LSSITDREVCCFSISCKEKVNIDITLDWL 177 (186)
T ss_pred cCCcEEEecccccCcccccHH-------HHHHHhC----------------ccccccceEEEEEEEEcCCccHHHHHHHH
Confidence 467999999999997653221 1111111 1111 123578999999999999999999
Q ss_pred HHHHH
Q psy7275 83 KLAGE 87 (150)
Q Consensus 83 ~e~~~ 87 (150)
.+...
T Consensus 178 i~hsk 182 (186)
T KOG0075|consen 178 IEHSK 182 (186)
T ss_pred HHHhh
Confidence 87653
No 294
>KOG0091|consensus
Probab=88.65 E-value=1.9 Score=34.80 Aligned_cols=27 Identities=19% Similarity=0.201 Sum_probs=23.3
Q ss_pred cCCcEEEeecCCCCCHHHHHHHHHHHH
Q psy7275 60 STLKVVGFSSVSGEGTEELLQLIKLAG 86 (150)
Q Consensus 60 ~~l~vv~VSA~TGeGideL~~~I~e~~ 86 (150)
.++.+|..||++|.++++-+.-|...+
T Consensus 146 hgM~FVETSak~g~NVeEAF~mlaqeI 172 (213)
T KOG0091|consen 146 HGMAFVETSAKNGCNVEEAFDMLAQEI 172 (213)
T ss_pred cCceEEEecccCCCcHHHHHHHHHHHH
Confidence 467999999999999999988887655
No 295
>KOG3905|consensus
Probab=88.46 E-value=2 Score=38.27 Aligned_cols=68 Identities=18% Similarity=0.220 Sum_probs=43.1
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK 83 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~ 83 (150)
+++|++||.+|+|.++--.. -.||- .+. ..|..+..|..+|. | +...|..|++...+++-|+..|.
T Consensus 221 lGi~vlVV~TK~D~~s~lek---e~eyr--Deh----fdfiq~~lRkFCLr----~-GaaLiyTSvKE~KNidllyKYiv 286 (473)
T KOG3905|consen 221 LGIPVLVVCTKCDAVSVLEK---EHEYR--DEH----FDFIQSHLRKFCLR----Y-GAALIYTSVKETKNIDLLYKYIV 286 (473)
T ss_pred CCCcEEEEEeccchhhHhhh---cchhh--HHH----HHHHHHHHHHHHHH----c-CceeEEeecccccchHHHHHHHH
Confidence 68999999999998432110 00110 011 13444555555544 2 46788999999999999998886
Q ss_pred HH
Q psy7275 84 LA 85 (150)
Q Consensus 84 e~ 85 (150)
..
T Consensus 287 hr 288 (473)
T KOG3905|consen 287 HR 288 (473)
T ss_pred HH
Confidence 53
No 296
>KOG1707|consensus
Probab=88.18 E-value=0.25 Score=46.05 Aligned_cols=74 Identities=16% Similarity=0.052 Sum_probs=48.5
Q ss_pred CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHH
Q psy7275 5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKL 84 (150)
Q Consensus 5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e 84 (150)
++|+|+|-||+|..+.... .+ | ..+.-++.+|-.--.+|.+||++-..+.|+|..-++
T Consensus 115 ~~PVILvGNK~d~~~~~~~----s~-e-----------------~~~~pim~~f~EiEtciecSA~~~~n~~e~fYyaqK 172 (625)
T KOG1707|consen 115 ETPVILVGNKSDNGDNENN----SD-E-----------------VNTLPIMIAFAEIETCIECSALTLANVSELFYYAQK 172 (625)
T ss_pred cCCEEEEeeccCCcccccc----ch-h-----------------HHHHHHHHHhHHHHHHHhhhhhhhhhhHhhhhhhhh
Confidence 6799999999998754431 00 0 011123334443347889999999999999999988
Q ss_pred HH-HHHHhhhHHHHHHH
Q psy7275 85 AG-EDYEKNYRVEWIRL 100 (150)
Q Consensus 85 ~~-~ey~~~y~pe~e~~ 100 (150)
++ ..-...|-++=+.+
T Consensus 173 aVihPt~PLyda~~qel 189 (625)
T KOG1707|consen 173 AVIHPTSPLYDAEEQEL 189 (625)
T ss_pred eeeccCccccccccccc
Confidence 77 44455665553333
No 297
>KOG0083|consensus
Probab=88.11 E-value=0.39 Score=37.66 Aligned_cols=32 Identities=16% Similarity=0.115 Sum_probs=25.5
Q ss_pred HHhhcCCcEEEeecCCCCCHHHHHHHHHHHHHH
Q psy7275 56 DEFYSTLKVVGFSSVSGEGTEELLQLIKLAGED 88 (150)
Q Consensus 56 ~efy~~l~vv~VSA~TGeGideL~~~I~e~~~e 88 (150)
.+-| ++++...||+||-++|--|-+|.+....
T Consensus 130 a~~y-~ipfmetsaktg~nvd~af~~ia~~l~k 161 (192)
T KOG0083|consen 130 AEAY-GIPFMETSAKTGFNVDLAFLAIAEELKK 161 (192)
T ss_pred HHHH-CCCceeccccccccHhHHHHHHHHHHHH
Confidence 3445 6999999999999999888888765543
No 298
>KOG0393|consensus
Probab=87.63 E-value=1.3 Score=35.98 Aligned_cols=71 Identities=17% Similarity=0.199 Sum_probs=40.0
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK 83 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~ 83 (150)
-+.|+|+|.+|.||.+.... .+.+... .....+.+=...+.........+..||++..|+.+.|+.-.
T Consensus 108 p~vpiiLVGtk~DLr~d~~~----------~~~l~~~--~~~~Vt~~~g~~lA~~iga~~y~EcSa~tq~~v~~vF~~a~ 175 (198)
T KOG0393|consen 108 PNVPIILVGTKADLRDDPST----------LEKLQRQ--GLEPVTYEQGLELAKEIGAVKYLECSALTQKGVKEVFDEAI 175 (198)
T ss_pred CCCCEEEEeehHHhhhCHHH----------HHHHHhc--cCCcccHHHHHHHHHHhCcceeeeehhhhhCCcHHHHHHHH
Confidence 46899999999999743211 1111100 00000000011122223346889999999999988887766
Q ss_pred HHH
Q psy7275 84 LAG 86 (150)
Q Consensus 84 e~~ 86 (150)
..+
T Consensus 176 ~~~ 178 (198)
T KOG0393|consen 176 RAA 178 (198)
T ss_pred HHH
Confidence 554
No 299
>PRK07560 elongation factor EF-2; Reviewed
Probab=86.73 E-value=1.4 Score=41.66 Aligned_cols=19 Identities=5% Similarity=0.006 Sum_probs=15.3
Q ss_pred CCCCCEEEeeecCCCCCch
Q psy7275 3 DTGFPYTELVVGIDIVNHK 21 (150)
Q Consensus 3 k~~lP~IlV~NKiDl~~~~ 21 (150)
+.++|.|+++||+|....+
T Consensus 137 ~~~~~~iv~iNK~D~~~~~ 155 (731)
T PRK07560 137 RERVKPVLFINKVDRLIKE 155 (731)
T ss_pred HcCCCeEEEEECchhhccc
Confidence 4578999999999987544
No 300
>KOG0463|consensus
Probab=86.49 E-value=0.52 Score=42.60 Aligned_cols=77 Identities=22% Similarity=0.230 Sum_probs=44.4
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhch-hhhhhhHHHHHHHH---HHhhc--CCcEEEeecCCCCCHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADS-SYISNLTRSMSLAL---DEFYS--TLKVVGFSSVSGEGTEE 77 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~-~y~~~L~~slsl~l---~efy~--~l~vv~VSA~TGeGide 77 (150)
+..|+.+|++|||.+++....|-|.... ..+.... --.--+.+++--+. ..|-+ --+++.||.+||++++-
T Consensus 272 L~VPVfvVVTKIDMCPANiLqEtmKll~---rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~L 348 (641)
T KOG0463|consen 272 LHVPVFVVVTKIDMCPANILQETMKLLT---RLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPL 348 (641)
T ss_pred hcCcEEEEEEeeccCcHHHHHHHHHHHH---HHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHH
Confidence 5679999999999999888777664433 3332110 00001222221111 12221 13889999999999976
Q ss_pred HHHHHH
Q psy7275 78 LLQLIK 83 (150)
Q Consensus 78 L~~~I~ 83 (150)
|...+.
T Consensus 349 LkmFLN 354 (641)
T KOG0463|consen 349 LKMFLN 354 (641)
T ss_pred HHHHHh
Confidence 655443
No 301
>KOG0090|consensus
Probab=85.88 E-value=1.5 Score=36.52 Aligned_cols=23 Identities=17% Similarity=0.205 Sum_probs=19.5
Q ss_pred CcEEEeecCCCCCHHHHHHHHHHH
Q psy7275 62 LKVVGFSSVSGEGTEELLQLIKLA 85 (150)
Q Consensus 62 l~vv~VSA~TGeGideL~~~I~e~ 85 (150)
+.+.+-|+++| +++++.+.|.++
T Consensus 215 V~F~e~S~~~~-~i~~~~~wi~~~ 237 (238)
T KOG0090|consen 215 VTFAEASAKTG-EIDQWESWIREA 237 (238)
T ss_pred eEEeecccCcC-ChHHHHHHHHHh
Confidence 46788899999 999999988765
No 302
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=85.80 E-value=2.2 Score=38.71 Aligned_cols=68 Identities=15% Similarity=0.215 Sum_probs=41.6
Q ss_pred CCCCEEEeeecCCCCCchh-hHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKY-AIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLI 82 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~-~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I 82 (150)
+++|++||.+|+|....-. -..|-+. ...|+...+|.+++- .+...|.+|++...+++-|+..|
T Consensus 195 lGipi~VV~tksD~~~~Lek~~~~~~e----------~~DfIqq~LR~~cL~-----yGAsL~yts~~~~~n~~~L~~yi 259 (472)
T PF05783_consen 195 LGIPIVVVCTKSDKIETLEKETDWKEE----------HFDFIQQYLRTFCLK-----YGASLIYTSVKEEKNLDLLYKYI 259 (472)
T ss_pred cCcceEEEEecccHHHHHhhhcccchh----------hHHHHHHHHHHHHHh-----cCCeEEEeeccccccHHHHHHHH
Confidence 5789999999999743110 0112211 012333344554433 25678888999999998888777
Q ss_pred HHHH
Q psy7275 83 KLAG 86 (150)
Q Consensus 83 ~e~~ 86 (150)
...+
T Consensus 260 ~h~l 263 (472)
T PF05783_consen 260 LHRL 263 (472)
T ss_pred HHHh
Confidence 6544
No 303
>KOG2484|consensus
Probab=85.62 E-value=0.82 Score=41.03 Aligned_cols=22 Identities=18% Similarity=0.354 Sum_probs=19.9
Q ss_pred CCEEEeeecCCCCCchhhHHHh
Q psy7275 6 FPYTELVVGIDIVNHKYAIEWM 27 (150)
Q Consensus 6 lP~IlV~NKiDl~~~~~~~ewm 27 (150)
.-.|+|+||+|+++.+...+|+
T Consensus 178 KkLILVLNK~DLVPrEv~e~Wl 199 (435)
T KOG2484|consen 178 KKLILVLNKIDLVPREVVEKWL 199 (435)
T ss_pred ceEEEEeehhccCCHHHHHHHH
Confidence 4589999999999999988998
No 304
>KOG0097|consensus
Probab=84.86 E-value=3 Score=33.03 Aligned_cols=20 Identities=20% Similarity=0.336 Sum_probs=16.5
Q ss_pred cCCcEEEeecCCCCCHHHHH
Q psy7275 60 STLKVVGFSSVSGEGTEELL 79 (150)
Q Consensus 60 ~~l~vv~VSA~TGeGideL~ 79 (150)
+++-++..||+||+++++-|
T Consensus 146 ngl~fle~saktg~nvedaf 165 (215)
T KOG0097|consen 146 NGLMFLEASAKTGQNVEDAF 165 (215)
T ss_pred cCeEEEEecccccCcHHHHH
Confidence 36788999999999997644
No 305
>KOG2486|consensus
Probab=83.14 E-value=0.31 Score=41.99 Aligned_cols=25 Identities=32% Similarity=0.251 Sum_probs=20.1
Q ss_pred cCCcEEEeecCCCCCHHHHHHHHHH
Q psy7275 60 STLKVVGFSSVSGEGTEELLQLIKL 84 (150)
Q Consensus 60 ~~l~vv~VSA~TGeGideL~~~I~e 84 (150)
..++-+.||+.|+.|++.|+--|..
T Consensus 289 ~~~Pw~~~Ssvt~~Grd~Ll~~i~q 313 (320)
T KOG2486|consen 289 VDLPWIYVSSVTSLGRDLLLLHIAQ 313 (320)
T ss_pred ccCCceeeecccccCceeeeeehhh
Confidence 3467788999999999998766654
No 306
>KOG2485|consensus
Probab=81.81 E-value=8.8 Score=33.55 Aligned_cols=80 Identities=19% Similarity=0.193 Sum_probs=43.5
Q ss_pred CCCEEEeeecCCCCCchhhHHHhhcHH------HHHHHHhhc-hhhhhhhHHHH---HHHHHHhhc---CCcEEEeecCC
Q psy7275 5 GFPYTELVVGIDIVNHKYAIEWMQDFE------VFQEALEAD-SSYISNLTRSM---SLALDEFYS---TLKVVGFSSVS 71 (150)
Q Consensus 5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e------~f~eal~~e-~~y~~~L~~sl---sl~l~efy~---~l~vv~VSA~T 71 (150)
..|-|+|+||+||.++......|+-++ .+......+ .-..+++...+ +..+..|.. .-..+.|=.+-
T Consensus 73 ~k~riiVlNK~DLad~~~~k~~iq~~~~~~~~~~~~~~c~~~~~~~v~~l~~il~~~~~~l~r~irt~~~~~~vmVvGvP 152 (335)
T KOG2485|consen 73 PKPRIIVLNKMDLADPKEQKKIIQYLEWQNLESYIKLDCNKDCNKQVSPLLKILTILSEELVRFIRTLNSEYNVMVVGVP 152 (335)
T ss_pred CCceEEEEecccccCchhhhHHHHHHHhhcccchhhhhhhhhhhhccccHHHHHHHHHHHHHHhhcccCCceeEEEEcCC
Confidence 458899999999998655443332221 111111111 11122222222 223334443 23567788889
Q ss_pred CCCHHHHHHHHHH
Q psy7275 72 GEGTEELLQLIKL 84 (150)
Q Consensus 72 GeGideL~~~I~e 84 (150)
+.|-..|++++..
T Consensus 153 NVGKSsLINa~r~ 165 (335)
T KOG2485|consen 153 NVGKSSLINALRN 165 (335)
T ss_pred CCChHHHHHHHHH
Confidence 9999999996654
No 307
>PF08438 MMR_HSR1_C: GTPase of unknown function C-terminal; InterPro: IPR013646 This domain is found at the C terminus of IPR002917 from INTERPRO in archaeal and eukaryotic GTP-binding proteins. ; PDB: 1WXQ_A.
Probab=81.65 E-value=1.3 Score=32.72 Aligned_cols=37 Identities=19% Similarity=0.138 Sum_probs=12.8
Q ss_pred hcCCcEEEeecCCCCCHHHHHHHHHHHHHHHHhhhHH---HHHHHHH
Q psy7275 59 YSTLKVVGFSSVSGEGTEELLQLIKLAGEDYEKNYRV---EWIRLRD 102 (150)
Q Consensus 59 y~~l~vv~VSA~TGeGideL~~~I~e~~~ey~~~y~p---e~e~~~~ 102 (150)
|.+..+|++||.. --++.++...-.-+|.| +++-...
T Consensus 21 ~~~~~vVp~SA~a-------El~Lr~a~k~g~I~Y~pGd~~F~i~~~ 60 (109)
T PF08438_consen 21 YPDEPVVPTSAAA-------ELALRKAAKAGLIDYIPGDSDFEITDD 60 (109)
T ss_dssp HTT-EEEEE-HHH-------HHHHHS-SSS----S------------
T ss_pred CCCCceeeccHHH-------HHHHHHHHHCCCEEeCCCCCceEeecc
Confidence 5678999999853 22344444444455666 4554443
No 308
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=80.59 E-value=3.8 Score=36.00 Aligned_cols=20 Identities=20% Similarity=0.478 Sum_probs=13.9
Q ss_pred CCC-EEEeeecCCCCCchhhH
Q psy7275 5 GFP-YTELVVGIDIVNHKYAI 24 (150)
Q Consensus 5 ~lP-~IlV~NKiDl~~~~~~~ 24 (150)
+.| +|+++||+|+++.+...
T Consensus 127 Gvp~ivvflnK~Dmvdd~ell 147 (394)
T COG0050 127 GVPYIVVFLNKVDMVDDEELL 147 (394)
T ss_pred CCcEEEEEEecccccCcHHHH
Confidence 456 45667999999865543
No 309
>KOG0459|consensus
Probab=79.05 E-value=3.4 Score=37.49 Aligned_cols=59 Identities=17% Similarity=0.261 Sum_probs=36.7
Q ss_pred CEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHh--hcCCcEEEeecCCCCCHHHHHH
Q psy7275 7 PYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEF--YSTLKVVGFSSVSGEGTEELLQ 80 (150)
Q Consensus 7 P~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~ef--y~~l~vv~VSA~TGeGideL~~ 80 (150)
-.|+++||+|=...++..+|.... .+-+. .+++-+ .| .....++++|..||.++.+...
T Consensus 219 ~lVv~vNKMddPtvnWs~eRy~E~---~~k~~-------~fLr~~-----g~n~~~d~~f~p~sg~tG~~~k~~~~ 279 (501)
T KOG0459|consen 219 HLIVLINKMDDPTVNWSNERYEEC---KEKLQ-------PFLRKL-----GFNPKPDKHFVPVSGLTGANVKDRTD 279 (501)
T ss_pred eEEEEEEeccCCccCcchhhHHHH---HHHHH-------HHHHHh-----cccCCCCceeeecccccccchhhccc
Confidence 479999999966666656665322 12211 111111 12 2346889999999999988765
No 310
>KOG0095|consensus
Probab=76.05 E-value=2.5 Score=33.73 Aligned_cols=21 Identities=14% Similarity=0.167 Sum_probs=17.2
Q ss_pred EEEeecCCCCCHHHHHHHHHH
Q psy7275 64 VVGFSSVSGEGTEELLQLIKL 84 (150)
Q Consensus 64 vv~VSA~TGeGideL~~~I~e 84 (150)
++..||+..++++.||..+.-
T Consensus 146 fletsakea~nve~lf~~~a~ 166 (213)
T KOG0095|consen 146 FLETSAKEADNVEKLFLDLAC 166 (213)
T ss_pred hhhhcccchhhHHHHHHHHHH
Confidence 456799999999999987753
No 311
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=75.92 E-value=2.7 Score=34.24 Aligned_cols=24 Identities=25% Similarity=0.277 Sum_probs=21.8
Q ss_pred CcEEEeecCCCCCHHHHHHHHHHH
Q psy7275 62 LKVVGFSSVSGEGTEELLQLIKLA 85 (150)
Q Consensus 62 l~vv~VSA~TGeGideL~~~I~e~ 85 (150)
.+++.+||+++.|++.|+++|...
T Consensus 241 ~pv~~gSa~~~~G~~~ll~~~~~~ 264 (268)
T cd04170 241 VPVLCGSALTNIGVRELLDALVHL 264 (268)
T ss_pred EEEEEeeCCCCcCHHHHHHHHHHh
Confidence 489999999999999999998764
No 312
>KOG0071|consensus
Probab=75.64 E-value=2.8 Score=33.12 Aligned_cols=59 Identities=22% Similarity=0.159 Sum_probs=37.3
Q ss_pred CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHh-hcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275 5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEF-YSTLKVVGFSSVSGEGTEELLQLIK 83 (150)
Q Consensus 5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~ef-y~~l~vv~VSA~TGeGideL~~~I~ 83 (150)
.+|++|..||-|+.++-...| .++.++ |+.. ...--+.+.||.+|.|+.|=+..+.
T Consensus 118 ~~~~LvlANkQDlp~A~~pqe-------i~d~le----------------Le~~r~~~W~vqp~~a~~gdgL~eglswls 174 (180)
T KOG0071|consen 118 DAIILILANKQDLPDAMKPQE-------IQDKLE----------------LERIRDRNWYVQPSCALSGDGLKEGLSWLS 174 (180)
T ss_pred cceEEEEecCcccccccCHHH-------HHHHhc----------------cccccCCccEeeccccccchhHHHHHHHHH
Confidence 468999999999976533211 122221 1110 1123678899999999998888876
Q ss_pred HHH
Q psy7275 84 LAG 86 (150)
Q Consensus 84 e~~ 86 (150)
+.+
T Consensus 175 nn~ 177 (180)
T KOG0071|consen 175 NNL 177 (180)
T ss_pred hhc
Confidence 654
No 313
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=75.27 E-value=1.7 Score=34.49 Aligned_cols=16 Identities=13% Similarity=0.231 Sum_probs=13.8
Q ss_pred CCCEEEeeecCCCCCc
Q psy7275 5 GFPYTELVVGIDIVNH 20 (150)
Q Consensus 5 ~lP~IlV~NKiDl~~~ 20 (150)
.+|+|+|.||+|+.+.
T Consensus 129 ~~PiilVGnK~Dl~~~ 144 (202)
T cd04102 129 QIPLLVIGTKLDQIPE 144 (202)
T ss_pred CceEEEEEECccchhh
Confidence 6899999999998653
No 314
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=73.88 E-value=4.6 Score=33.59 Aligned_cols=19 Identities=5% Similarity=0.039 Sum_probs=15.6
Q ss_pred CCCEEEeeecCCCCCchhh
Q psy7275 5 GFPYTELVVGIDIVNHKYA 23 (150)
Q Consensus 5 ~lP~IlV~NKiDl~~~~~~ 23 (150)
+.|+|+|+||+|+...+..
T Consensus 143 ~v~vi~VinK~D~l~~~e~ 161 (276)
T cd01850 143 RVNIIPVIAKADTLTPEEL 161 (276)
T ss_pred cCCEEEEEECCCcCCHHHH
Confidence 6799999999999775443
No 315
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=72.64 E-value=3.6 Score=32.13 Aligned_cols=24 Identities=42% Similarity=0.463 Sum_probs=17.8
Q ss_pred CCcEEEeecCCCCCHHHHHHHHHH
Q psy7275 61 TLKVVGFSSVSGEGTEELLQLIKL 84 (150)
Q Consensus 61 ~l~vv~VSA~TGeGideL~~~I~e 84 (150)
+.+++.||+.+|+|+++|.+.+..
T Consensus 12 gy~v~~~S~~~~~g~~~l~~~l~~ 35 (161)
T PF03193_consen 12 GYPVFFISAKTGEGIEELKELLKG 35 (161)
T ss_dssp TSEEEE-BTTTTTTHHHHHHHHTT
T ss_pred CCcEEEEeCCCCcCHHHHHHHhcC
Confidence 357888888888888888877765
No 316
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=72.41 E-value=7.7 Score=33.47 Aligned_cols=14 Identities=14% Similarity=0.188 Sum_probs=12.1
Q ss_pred EEeeecCCCCCchh
Q psy7275 9 TELVVGIDIVNHKY 22 (150)
Q Consensus 9 IlV~NKiDl~~~~~ 22 (150)
++|+||+|+++++.
T Consensus 149 ~ivlNK~Dlv~~~~ 162 (323)
T COG0523 149 VIVLNKTDLVDAEE 162 (323)
T ss_pred EEEEecccCCCHHH
Confidence 78999999998764
No 317
>PTZ00258 GTP-binding protein; Provisional
Probab=70.14 E-value=7.1 Score=34.63 Aligned_cols=15 Identities=33% Similarity=0.122 Sum_probs=12.6
Q ss_pred CCCCCEEEeeecC--CC
Q psy7275 3 DTGFPYTELVVGI--DI 17 (150)
Q Consensus 3 k~~lP~IlV~NKi--Dl 17 (150)
.+..|+|+|+||. |+
T Consensus 218 lt~KP~iyv~N~~E~D~ 234 (390)
T PTZ00258 218 LTAKPMIYLVNMSEKDF 234 (390)
T ss_pred hhcCCEEEEEECchhhh
Confidence 3557999999999 86
No 318
>KOG0082|consensus
Probab=70.12 E-value=3.1 Score=36.58 Aligned_cols=78 Identities=9% Similarity=0.083 Sum_probs=45.4
Q ss_pred CCCEEEeeecCCCCCc----hhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHH
Q psy7275 5 GFPYTELVVGIDIVNH----KYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQ 80 (150)
Q Consensus 5 ~lP~IlV~NKiDl~~~----~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~ 80 (150)
..++|+.+||.||... .....|..||+.- ........|+.....++..-.. ..+-+....|..-..++.++.
T Consensus 262 ~tsiiLFLNK~DLFeEKi~~~~~~~~Fpdy~G~-~~~~~a~~yI~~kF~~l~~~~~---k~iy~h~T~AtDT~nv~~vf~ 337 (354)
T KOG0082|consen 262 NTSIILFLNKKDLFEEKIKKVPLTDCFPDYKGV-NTYEEAAKYIRKKFEELNKNKD---KKIYVHFTCATDTQNVQFVFD 337 (354)
T ss_pred cCcEEEEeecHHHHHHHhccCchhhhCcCCCCC-CChHHHHHHHHHHHHHHhcccC---CcceEEEEeeccHHHHHHHHH
Confidence 4689999999998432 2234677666533 1111122344444343321110 234445557888888999999
Q ss_pred HHHHHH
Q psy7275 81 LIKLAG 86 (150)
Q Consensus 81 ~I~e~~ 86 (150)
++.+.+
T Consensus 338 av~d~I 343 (354)
T KOG0082|consen 338 AVTDTI 343 (354)
T ss_pred HHHHHH
Confidence 988766
No 319
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=67.44 E-value=16 Score=33.49 Aligned_cols=59 Identities=12% Similarity=0.205 Sum_probs=34.4
Q ss_pred CCCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHH
Q psy7275 3 DTGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLI 82 (150)
Q Consensus 3 k~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I 82 (150)
+.++|||+|+||+|-..++. .++. +.+ .+-| +.++++||.. .-.-+++...+
T Consensus 178 ~~~kPfiivlN~~dp~~~et-~~l~-------~~l------------------~eky-~vpvl~v~c~-~l~~~DI~~il 229 (492)
T TIGR02836 178 ELNKPFIILLNSTHPYHPET-EALR-------QEL------------------EEKY-DVPVLAMDVE-SMRESDILSVL 229 (492)
T ss_pred hcCCCEEEEEECcCCCCchh-HHHH-------HHH------------------HHHh-CCceEEEEHH-HcCHHHHHHHH
Confidence 45789999999999443332 1111 111 1223 3566776653 34456777777
Q ss_pred HHHHHHH
Q psy7275 83 KLAGEDY 89 (150)
Q Consensus 83 ~e~~~ey 89 (150)
.+.+-||
T Consensus 230 ~~vL~EF 236 (492)
T TIGR02836 230 EEVLYEF 236 (492)
T ss_pred HHHHhcC
Confidence 7777666
No 320
>KOG3883|consensus
Probab=65.61 E-value=14 Score=29.60 Aligned_cols=59 Identities=10% Similarity=0.084 Sum_probs=38.4
Q ss_pred CCCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHH
Q psy7275 3 DTGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLI 82 (150)
Q Consensus 3 k~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I 82 (150)
|-.+|+++..||+|+..+... |.+ ++..+..+ ..++...|+|+..-.+-|.|..+
T Consensus 116 KKEvpiVVLaN~rdr~~p~~v-----d~d-----------~A~~Wa~r---------Ekvkl~eVta~dR~sL~epf~~l 170 (198)
T KOG3883|consen 116 KKEVPIVVLANKRDRAEPREV-----DMD-----------VAQIWAKR---------EKVKLWEVTAMDRPSLYEPFTYL 170 (198)
T ss_pred cccccEEEEechhhcccchhc-----CHH-----------HHHHHHhh---------hheeEEEEEeccchhhhhHHHHH
Confidence 456799999999999654321 111 11111111 24688899999999988888877
Q ss_pred HHHH
Q psy7275 83 KLAG 86 (150)
Q Consensus 83 ~e~~ 86 (150)
....
T Consensus 171 ~~rl 174 (198)
T KOG3883|consen 171 ASRL 174 (198)
T ss_pred HHhc
Confidence 6554
No 321
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=64.62 E-value=10 Score=30.09 Aligned_cols=19 Identities=16% Similarity=0.057 Sum_probs=12.3
Q ss_pred CCCCCEEEeeecCCCCCch
Q psy7275 3 DTGFPYTELVVGIDIVNHK 21 (150)
Q Consensus 3 k~~lP~IlV~NKiDl~~~~ 21 (150)
+.++|++|+.||.|+..+.
T Consensus 110 ~~~~piLIacNK~Dl~~A~ 128 (181)
T PF09439_consen 110 KNKPPILIACNKQDLFTAK 128 (181)
T ss_dssp TT--EEEEEEE-TTSTT--
T ss_pred cCCCCEEEEEeCccccccC
Confidence 4678999999999997643
No 322
>KOG0080|consensus
Probab=64.28 E-value=9.5 Score=30.81 Aligned_cols=28 Identities=7% Similarity=-0.072 Sum_probs=22.0
Q ss_pred CcEEEeecCCCCCHHHHHHHHHHHHHHH
Q psy7275 62 LKVVGFSSVSGEGTEELLQLIKLAGEDY 89 (150)
Q Consensus 62 l~vv~VSA~TGeGideL~~~I~e~~~ey 89 (150)
.-++..||+|.+|+...|+.+.+++-+-
T Consensus 149 ~LFiE~SAkt~~~V~~~FeelveKIi~t 176 (209)
T KOG0080|consen 149 CLFIECSAKTRENVQCCFEELVEKIIET 176 (209)
T ss_pred cEEEEcchhhhccHHHHHHHHHHHHhcC
Confidence 3567889999999999888877766443
No 323
>KOG2423|consensus
Probab=64.16 E-value=14 Score=33.72 Aligned_cols=76 Identities=12% Similarity=0.251 Sum_probs=41.9
Q ss_pred CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhH-----HHHHHHHHHhhc---C--CcEEEeecCCCCC
Q psy7275 5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLT-----RSMSLALDEFYS---T--LKVVGFSSVSGEG 74 (150)
Q Consensus 5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~-----~slsl~l~efy~---~--l~vv~VSA~TGeG 74 (150)
..-+|.|+||+||++--....|+.-+...+--+. |-.|+. .++...|..|.. . --.|+.=..-..|
T Consensus 244 hKHli~vLNKvDLVPtwvt~~Wv~~lSkeyPTiA----fHAsi~nsfGKgalI~llRQf~kLh~dkkqISVGfiGYPNvG 319 (572)
T KOG2423|consen 244 HKHLIYVLNKVDLVPTWVTAKWVRHLSKEYPTIA----FHASINNSFGKGALIQLLRQFAKLHSDKKQISVGFIGYPNVG 319 (572)
T ss_pred cceeEEEeeccccccHHHHHHHHHHHhhhCccee----eehhhcCccchhHHHHHHHHHHhhccCccceeeeeecCCCCc
Confidence 3458999999999987666789854432221111 111111 122222333321 1 1235555677788
Q ss_pred HHHHHHHHHH
Q psy7275 75 TEELLQLIKL 84 (150)
Q Consensus 75 ideL~~~I~e 84 (150)
-..+++.+..
T Consensus 320 KSSiINTLR~ 329 (572)
T KOG2423|consen 320 KSSIINTLRK 329 (572)
T ss_pred hHHHHHHHhh
Confidence 8888777765
No 324
>PLN00023 GTP-binding protein; Provisional
Probab=64.14 E-value=4.6 Score=35.23 Aligned_cols=16 Identities=25% Similarity=0.320 Sum_probs=13.6
Q ss_pred CCCEEEeeecCCCCCc
Q psy7275 5 GFPYTELVVGIDIVNH 20 (150)
Q Consensus 5 ~lP~IlV~NKiDl~~~ 20 (150)
.+|+|||.||+|+...
T Consensus 151 ~ipIILVGNK~DL~~~ 166 (334)
T PLN00023 151 PVPYIVIGNKADIAPK 166 (334)
T ss_pred CCcEEEEEECcccccc
Confidence 4899999999999653
No 325
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=63.33 E-value=14 Score=34.46 Aligned_cols=59 Identities=19% Similarity=0.166 Sum_probs=37.7
Q ss_pred CCCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEE--EeecCCCCCHHHHHH
Q psy7275 3 DTGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVV--GFSSVSGEGTEELLQ 80 (150)
Q Consensus 3 k~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv--~VSA~TGeGideL~~ 80 (150)
++++|+||++||-|.-+.+.. ++++++ .. + .+++++ .+=+.=|+|--+|-.
T Consensus 370 ~FGvPvVVAINKFd~DTe~Ei-~~I~~~------c~------------------e--~Gv~va~~~~~~~Gg~Gai~LA~ 422 (557)
T PRK13505 370 KFGVPVVVAINKFVTDTDAEI-AALKEL------CE------------------E--LGVEVALSEVWAKGGEGGVELAE 422 (557)
T ss_pred HcCCCEEEEEeCCCCCCHHHH-HHHHHH------HH------------------H--cCCCEEEecccccCCcchHHHHH
Confidence 578999999999997554332 222111 11 1 134443 333677889999999
Q ss_pred HHHHHHHH
Q psy7275 81 LIKLAGED 88 (150)
Q Consensus 81 ~I~e~~~e 88 (150)
.|.+++++
T Consensus 423 aVveA~~~ 430 (557)
T PRK13505 423 KVVELIEE 430 (557)
T ss_pred HHHHHHhc
Confidence 99888764
No 326
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=61.62 E-value=4.4 Score=35.01 Aligned_cols=24 Identities=13% Similarity=0.073 Sum_probs=18.9
Q ss_pred CcEEEeecCCCCCHHHHHHHHHHH
Q psy7275 62 LKVVGFSSVSGEGTEELLQLIKLA 85 (150)
Q Consensus 62 l~vv~VSA~TGeGideL~~~I~e~ 85 (150)
+-+..++|..-..+..+++.|.+.
T Consensus 365 ~~~h~t~a~d~~~~~~v~~~v~~~ 388 (389)
T PF00503_consen 365 IYVHFTCATDTENIRKVFNAVKDI 388 (389)
T ss_dssp EEEEEESTTSHHHHHHHHHHHHHH
T ss_pred eEEEEeeecccHHHHHHHHHhcCc
Confidence 355688888888888888888765
No 327
>COG3596 Predicted GTPase [General function prediction only]
Probab=61.20 E-value=22 Score=30.61 Aligned_cols=69 Identities=22% Similarity=0.160 Sum_probs=42.6
Q ss_pred CCEEEeeecCCCCCchhhHHHh----hcHHHHHHHHhhchhhhhhhHHHHHHHHHH-hhcCCcEEEeecCCCCCHHHHHH
Q psy7275 6 FPYTELVVGIDIVNHKYAIEWM----QDFEVFQEALEADSSYISNLTRSMSLALDE-FYSTLKVVGFSSVSGEGTEELLQ 80 (150)
Q Consensus 6 lP~IlV~NKiDl~~~~~~~ewm----~D~e~f~eal~~e~~y~~~L~~slsl~l~e-fy~~l~vv~VSA~TGeGideL~~ 80 (150)
.|+|+|+|-+|..-+- .+|= .--.+..+++++ -.+. +.+ |.+..+++.+|+.++-|++.|..
T Consensus 149 ~~~i~~VtQ~D~a~p~--~~W~~~~~~p~~a~~qfi~~----k~~~-------~~~~~q~V~pV~~~~~r~~wgl~~l~~ 215 (296)
T COG3596 149 KRVLFVVTQADRAEPG--REWDSAGHQPSPAIKQFIEE----KAEA-------LGRLFQEVKPVVAVSGRLPWGLKELVR 215 (296)
T ss_pred ceeEEEEehhhhhccc--cccccccCCCCHHHHHHHHH----HHHH-------HHHHHhhcCCeEEeccccCccHHHHHH
Confidence 6899999999976442 1221 000112222221 1111 223 33456999999999999999999
Q ss_pred HHHHHHH
Q psy7275 81 LIKLAGE 87 (150)
Q Consensus 81 ~I~e~~~ 87 (150)
++..+..
T Consensus 216 ali~~lp 222 (296)
T COG3596 216 ALITALP 222 (296)
T ss_pred HHHHhCc
Confidence 9998774
No 328
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=58.42 E-value=60 Score=30.00 Aligned_cols=31 Identities=16% Similarity=0.134 Sum_probs=23.8
Q ss_pred HHhhcC--CcEEEeecCCCCCHHHHHHHHHHHH
Q psy7275 56 DEFYST--LKVVGFSSVSGEGTEELLQLIKLAG 86 (150)
Q Consensus 56 ~efy~~--l~vv~VSA~TGeGideL~~~I~e~~ 86 (150)
+.|..+ .++++=||++.-|++.|++.+...+
T Consensus 243 ~~fl~G~~TPVFFGSAl~NFGV~~~L~~~~~~A 275 (528)
T COG4108 243 EAFLAGELTPVFFGSALGNFGVDHFLDALVDWA 275 (528)
T ss_pred HHHhcCCccceEehhhhhccCHHHHHHHHHhhC
Confidence 344444 2888899999999999999887643
No 329
>PTZ00416 elongation factor 2; Provisional
Probab=57.36 E-value=12 Score=36.12 Aligned_cols=16 Identities=6% Similarity=0.030 Sum_probs=13.8
Q ss_pred CCCCCEEEeeecCCCC
Q psy7275 3 DTGFPYTELVVGIDIV 18 (150)
Q Consensus 3 k~~lP~IlV~NKiDl~ 18 (150)
+.++|+|+|+||+|+.
T Consensus 142 ~~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 142 QERIRPVLFINKVDRA 157 (836)
T ss_pred HcCCCEEEEEEChhhh
Confidence 3568999999999986
No 330
>KOG1486|consensus
Probab=57.19 E-value=23 Score=30.75 Aligned_cols=50 Identities=18% Similarity=0.029 Sum_probs=32.9
Q ss_pred CCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHHH
Q psy7275 6 FPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKLA 85 (150)
Q Consensus 6 lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e~ 85 (150)
+|.+-|.||+|.++-+.. + .+. .....+.||.-..-|++.|++.|.+.
T Consensus 239 ~~ClYvYnKID~vs~eev-------d----rlA---------------------r~PnsvViSC~m~lnld~lle~iWe~ 286 (364)
T KOG1486|consen 239 IKCLYVYNKIDQVSIEEV-------D----RLA---------------------RQPNSVVISCNMKLNLDRLLERIWEE 286 (364)
T ss_pred EEEEEEeeccceecHHHH-------H----HHh---------------------cCCCcEEEEeccccCHHHHHHHHHHH
Confidence 588999999998765432 1 111 12355667777777777777777765
Q ss_pred HH
Q psy7275 86 GE 87 (150)
Q Consensus 86 ~~ 87 (150)
+.
T Consensus 287 l~ 288 (364)
T KOG1486|consen 287 LN 288 (364)
T ss_pred hc
Confidence 53
No 331
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=56.42 E-value=20 Score=31.87 Aligned_cols=18 Identities=11% Similarity=-0.258 Sum_probs=14.3
Q ss_pred CCCCCEEEeeecCCCCCc
Q psy7275 3 DTGFPYTELVVGIDIVNH 20 (150)
Q Consensus 3 k~~lP~IlV~NKiDl~~~ 20 (150)
.+..|+|+|.||.|....
T Consensus 204 lt~KP~lyvaN~~e~~~~ 221 (372)
T COG0012 204 LTAKPMLYVANVSEDDLA 221 (372)
T ss_pred hhcCCeEEEEECCccccc
Confidence 356799999999997543
No 332
>PRK10328 DNA binding protein, nucleoid-associated; Provisional
Probab=56.27 E-value=21 Score=27.20 Aligned_cols=49 Identities=14% Similarity=0.205 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHhhCCCCCCCCccc
Q psy7275 75 TEELLQLIKLAGEDYEKNYRVEWIRLRDEKAKSEQLEKREQHFALPTPQPLWASC 129 (150)
Q Consensus 75 ideL~~~I~e~~~ey~~~y~pe~e~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 129 (150)
++++.+.+..+++|...++.. ..++.++.+++-+++..++...||++.-
T Consensus 26 Lee~~ekl~~vv~er~~~~~~------~~~~~~er~~~l~~i~~~~~~~Git~ee 74 (134)
T PRK10328 26 LEEMLEKFRVVTKERREEEEQ------QQRELAERQEKINTWLELMKADGINPEE 74 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHhCCCHHH
Confidence 345555555555555554422 2233334445556677777778877653
No 333
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=55.72 E-value=7.8 Score=36.92 Aligned_cols=21 Identities=19% Similarity=0.309 Sum_probs=18.2
Q ss_pred CCCCCEEEeeecCCCCCchhh
Q psy7275 3 DTGFPYTELVVGIDIVNHKYA 23 (150)
Q Consensus 3 k~~lP~IlV~NKiDl~~~~~~ 23 (150)
+.++|.|+++||+|....++.
T Consensus 126 ~~~vp~i~fiNKmDR~~a~~~ 146 (697)
T COG0480 126 KYGVPRILFVNKMDRLGADFY 146 (697)
T ss_pred hcCCCeEEEEECccccccChh
Confidence 578899999999999887764
No 334
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=55.71 E-value=16 Score=35.27 Aligned_cols=16 Identities=13% Similarity=-0.064 Sum_probs=14.2
Q ss_pred CCCCCEEEeeecCCCC
Q psy7275 3 DTGFPYTELVVGIDIV 18 (150)
Q Consensus 3 k~~lP~IlV~NKiDl~ 18 (150)
+.++|+|+++||+|..
T Consensus 148 ~~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 148 GERIRPVLTVNKMDRC 163 (843)
T ss_pred HCCCCEEEEEECCccc
Confidence 4678999999999986
No 335
>PF15469 Sec5: Exocyst complex component Sec5
Probab=55.22 E-value=29 Score=26.67 Aligned_cols=51 Identities=16% Similarity=0.257 Sum_probs=37.7
Q ss_pred HHHhhcCCcEEEeecCCCCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q psy7275 55 LDEFYSTLKVVGFSSVSGEGTEELLQLIKLAGEDYEKNYRVEWIRLRDEKA 105 (150)
Q Consensus 55 l~efy~~l~vv~VSA~TGeGideL~~~I~e~~~ey~~~y~pe~e~~~~~~~ 105 (150)
++.+|..+.--...+..+.|++.|...|.++......-+.|-++++.++..
T Consensus 22 id~i~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~pll~~~~k~~~ 72 (182)
T PF15469_consen 22 IDDIYEEFRNMKTEAQQDSGTEKLEESLNEASSKANSVFKPLLERREKADK 72 (182)
T ss_pred HHHHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHH
Confidence 344454444444455666899999999999999999999998887665543
No 336
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=55.00 E-value=25 Score=27.71 Aligned_cols=29 Identities=17% Similarity=0.116 Sum_probs=21.5
Q ss_pred CcEEEeecC------CCCCHHHHHHHHHHHHHHHH
Q psy7275 62 LKVVGFSSV------SGEGTEELLQLIKLAGEDYE 90 (150)
Q Consensus 62 l~vv~VSA~------TGeGideL~~~I~e~~~ey~ 90 (150)
-+.+.++.. ....+.+|+..|.+++.+-.
T Consensus 155 ~R~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n~ 189 (212)
T PF04548_consen 155 GRYHVFNNKTKDKEKDESQVSELLEKIEEMVQENG 189 (212)
T ss_dssp TCEEECCTTHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CEEEEEeccccchhhhHHHHHHHHHHHHHHHHHcC
Confidence 477777776 33557899999999997654
No 337
>KOG1534|consensus
Probab=54.38 E-value=8.5 Score=32.39 Aligned_cols=86 Identities=20% Similarity=0.246 Sum_probs=53.1
Q ss_pred CCCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhc-------hhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCH
Q psy7275 3 DTGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEAD-------SSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGT 75 (150)
Q Consensus 3 k~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e-------~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGi 75 (150)
...+|.|.|+.|.|+..... ++-++.|-...+.+.-+ +.=...|.+++.-.+++| +-+.++|.-.-.-+.+
T Consensus 162 ~lE~P~INvlsKMDLlk~~~-k~~l~~Fl~~d~~~l~~~~~~~~~s~Kf~~L~~~i~~~v~d~-~Mv~FlPl~~~~eeSi 239 (273)
T KOG1534|consen 162 SLEVPHINVLSKMDLLKDKN-KKELERFLNPDEYLLLEDSEINLRSPKFKKLTKCIAQLVDDY-SMVNFLPLDSSDEESI 239 (273)
T ss_pred HhcCcchhhhhHHHHhhhhh-HHHHHHhcCCchhhhhcccccccccHHHHHHHHHHHHHhccc-cceeeeecCCCCHHHH
Confidence 46789999999999986521 11111110000111000 001234677777677775 4679999988888889
Q ss_pred HHHHHHHHHHHHHHH
Q psy7275 76 EELLQLIKLAGEDYE 90 (150)
Q Consensus 76 deL~~~I~e~~~ey~ 90 (150)
+-++..|..+++=|+
T Consensus 240 ~~iL~~ID~aiQy~E 254 (273)
T KOG1534|consen 240 NIILSYIDDAIQYGE 254 (273)
T ss_pred HHHHHHHHHHHHhcc
Confidence 999998888776443
No 338
>KOG0077|consensus
Probab=53.58 E-value=11 Score=30.52 Aligned_cols=18 Identities=28% Similarity=0.261 Sum_probs=15.0
Q ss_pred CCCCEEEeeecCCCCCch
Q psy7275 4 TGFPYTELVVGIDIVNHK 21 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~ 21 (150)
..+|+++..||+|...+-
T Consensus 120 a~vp~lilgnKId~p~a~ 137 (193)
T KOG0077|consen 120 ATVPFLILGNKIDIPYAA 137 (193)
T ss_pred hcCcceeecccccCCCcc
Confidence 367999999999997653
No 339
>KOG1533|consensus
Probab=53.33 E-value=13 Score=31.79 Aligned_cols=83 Identities=16% Similarity=0.275 Sum_probs=48.8
Q ss_pred CCCCCCEEEeeecCCCCCchh----hHHH---hhcHHHHHHHHhhchh--hhhhhHHHHHHHHHHhhcCCcEEEeecCCC
Q psy7275 2 YDTGFPYTELVVGIDIVNHKY----AIEW---MQDFEVFQEALEADSS--YISNLTRSMSLALDEFYSTLKVVGFSSVSG 72 (150)
Q Consensus 2 yk~~lP~IlV~NKiDl~~~~~----~~ew---m~D~e~f~eal~~e~~--y~~~L~~slsl~l~efy~~l~vv~VSA~TG 72 (150)
....+|.|.|+.|+|+...-. -.++ ++|...+...+..+.. -.+-|...++.+.++|. -+.+..++--..
T Consensus 160 l~melphVNvlSK~Dl~~~ygkl~f~ld~yt~v~Dl~yL~~~ld~dp~~~kYrkLne~ic~~IeD~~-LVSF~~L~v~nk 238 (290)
T KOG1533|consen 160 LHMELPHVNVLSKADLLKKYGKLPFNLDFYTEVQDLSYLEDLLDVDPRLRKYRKLNEAICELIEDFN-LVSFEVLDVDNK 238 (290)
T ss_pred HhhcccchhhhhHhHHHHhhcccccccchhhhhhhHHHHHHHhccChhhhHHHHHHHHHHHHHhccC-ceeeEEeeccCH
Confidence 356789999999999875322 1111 2344444444433322 13556777777777763 346666666666
Q ss_pred CCHHHHHHHHHHH
Q psy7275 73 EGTEELLQLIKLA 85 (150)
Q Consensus 73 eGideL~~~I~e~ 85 (150)
+.+-.|...|.++
T Consensus 239 eSml~l~~~IDkA 251 (290)
T KOG1533|consen 239 ESMLRLQQTIDKA 251 (290)
T ss_pred HHHHHHHHHHHhc
Confidence 6666666666653
No 340
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=52.71 E-value=10 Score=31.27 Aligned_cols=19 Identities=11% Similarity=0.265 Sum_probs=15.4
Q ss_pred CCCCCEEEeeecCCCCCch
Q psy7275 3 DTGFPYTELVVGIDIVNHK 21 (150)
Q Consensus 3 k~~lP~IlV~NKiDl~~~~ 21 (150)
+.+.|.|+|+||+|..+..
T Consensus 190 ~~~~rti~ViTK~D~~~~~ 208 (240)
T smart00053 190 PQGERTIGVITKLDLMDEG 208 (240)
T ss_pred HcCCcEEEEEECCCCCCcc
Confidence 3567999999999987643
No 341
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=52.54 E-value=6.5 Score=33.32 Aligned_cols=25 Identities=8% Similarity=-0.124 Sum_probs=20.2
Q ss_pred CcEEEeecCCCCCHHHHHHHHHHHH
Q psy7275 62 LKVVGFSSVSGEGTEELLQLIKLAG 86 (150)
Q Consensus 62 l~vv~VSA~TGeGideL~~~I~e~~ 86 (150)
+-+..++|..-..+..++++|.+.+
T Consensus 286 ~~~~~t~a~Dt~~i~~vf~~v~~~i 310 (317)
T cd00066 286 IYPHFTCATDTENIRFVFDAVKDII 310 (317)
T ss_pred EEEEeccccchHHHHHHHHHHHHHH
Confidence 4556788888889999999888765
No 342
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=49.59 E-value=8.3 Score=36.43 Aligned_cols=20 Identities=5% Similarity=0.052 Sum_probs=16.1
Q ss_pred CCCCCEEEeeecCCCCCchh
Q psy7275 3 DTGFPYTELVVGIDIVNHKY 22 (150)
Q Consensus 3 k~~lP~IlV~NKiDl~~~~~ 22 (150)
+.++|.|+|+||+|....++
T Consensus 136 ~~~~p~ivviNKiD~~~~~~ 155 (720)
T TIGR00490 136 KENVKPVLFINKVDRLINEL 155 (720)
T ss_pred HcCCCEEEEEEChhcccchh
Confidence 46789999999999876543
No 343
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=49.09 E-value=8.5 Score=33.13 Aligned_cols=25 Identities=4% Similarity=-0.142 Sum_probs=21.1
Q ss_pred CcEEEeecCCCCCHHHHHHHHHHHH
Q psy7275 62 LKVVGFSSVSGEGTEELLQLIKLAG 86 (150)
Q Consensus 62 l~vv~VSA~TGeGideL~~~I~e~~ 86 (150)
+-+..++|..-..+..+++.+...+
T Consensus 309 ~y~h~t~a~Dt~~~~~v~~~v~~~I 333 (342)
T smart00275 309 IYHHFTCATDTRNIRVVFDAVKDII 333 (342)
T ss_pred EEEEEeeecccHHHHHHHHHHHHHH
Confidence 4567889999999999999988766
No 344
>KOG0467|consensus
Probab=46.53 E-value=19 Score=35.12 Aligned_cols=13 Identities=31% Similarity=0.312 Sum_probs=12.0
Q ss_pred cEEEeecCCCCCH
Q psy7275 63 KVVGFSSVSGEGT 75 (150)
Q Consensus 63 ~vv~VSA~TGeGi 75 (150)
.++..||..|-||
T Consensus 193 NVif~~A~~~~~f 205 (887)
T KOG0467|consen 193 NVIFASALDGWGF 205 (887)
T ss_pred cEEEEEecccccc
Confidence 7899999999997
No 345
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=45.71 E-value=17 Score=30.11 Aligned_cols=24 Identities=21% Similarity=0.210 Sum_probs=21.1
Q ss_pred CcEEEeecCCCCCHHHHHHHHHHH
Q psy7275 62 LKVVGFSSVSGEGTEELLQLIKLA 85 (150)
Q Consensus 62 l~vv~VSA~TGeGideL~~~I~e~ 85 (150)
+|++..||.++.|++.|++.|...
T Consensus 243 ~PV~~gSa~~~~Gi~~lld~i~~~ 266 (270)
T cd01886 243 VPVLCGSAFKNKGVQPLLDAVVDY 266 (270)
T ss_pred EEEEeCcCCCCcCHHHHHHHHHHh
Confidence 488888999999999999998764
No 346
>KOG0096|consensus
Probab=44.89 E-value=12 Score=30.69 Aligned_cols=55 Identities=15% Similarity=0.084 Sum_probs=37.6
Q ss_pred CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHH
Q psy7275 5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKL 84 (150)
Q Consensus 5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e 84 (150)
.+|+|+.-||+|+-+.....+ .+. + +. -.++..+.+||++.-+++.=|-.+.+
T Consensus 114 NiPiv~cGNKvDi~~r~~k~k----------~v~--------~--------~r-kknl~y~~iSaksn~NfekPFl~Lar 166 (216)
T KOG0096|consen 114 NIPIVLCGNKVDIKARKVKAK----------PVS--------F--------HR-KKNLQYYEISAKSNYNFERPFLWLAR 166 (216)
T ss_pred CCCeeeeccceeccccccccc----------cce--------e--------ee-cccceeEEeecccccccccchHHHhh
Confidence 589999999999866542111 010 0 00 23678899999999999877777776
Q ss_pred HH
Q psy7275 85 AG 86 (150)
Q Consensus 85 ~~ 86 (150)
++
T Consensus 167 Kl 168 (216)
T KOG0096|consen 167 KL 168 (216)
T ss_pred hh
Confidence 55
No 347
>TIGR00824 EIIA-man PTS system, mannose/fructose/sorbose family, IIA component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIA components.
Probab=42.12 E-value=90 Score=22.49 Aligned_cols=28 Identities=29% Similarity=0.286 Sum_probs=24.6
Q ss_pred cEEEeecCCCCCHHHHHHHHHHHHHHHH
Q psy7275 63 KVVGFSSVSGEGTEELLQLIKLAGEDYE 90 (150)
Q Consensus 63 ~vv~VSA~TGeGideL~~~I~e~~~ey~ 90 (150)
.+..+|...|.+.+++.+.+.+.++++.
T Consensus 29 ~i~~i~~~~~~~~~~~~~~l~~~i~~~~ 56 (116)
T TIGR00824 29 NVGAVPFVPGENAETLQEKYNAALADLD 56 (116)
T ss_pred CeEEEEcCCCcCHHHHHHHHHHHHHhcC
Confidence 5888899999999999999999888764
No 348
>KOG0460|consensus
Probab=40.53 E-value=42 Score=30.18 Aligned_cols=18 Identities=17% Similarity=0.338 Sum_probs=12.5
Q ss_pred EEEeeecCCCCCchhhHH
Q psy7275 8 YTELVVGIDIVNHKYAIE 25 (150)
Q Consensus 8 ~IlV~NKiDl~~~~~~~e 25 (150)
+|+.+||+|+++.....|
T Consensus 173 ivvfiNKvD~V~d~e~le 190 (449)
T KOG0460|consen 173 IVVFINKVDLVDDPEMLE 190 (449)
T ss_pred EEEEEecccccCCHHHHH
Confidence 556679999996655433
No 349
>KOG0085|consensus
Probab=39.67 E-value=30 Score=29.69 Aligned_cols=86 Identities=12% Similarity=0.091 Sum_probs=42.8
Q ss_pred CCCEEEeeecCCCCCchhhH----HHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHH
Q psy7275 5 GFPYTELVVGIDIVNHKYAI----EWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQ 80 (150)
Q Consensus 5 ~lP~IlV~NKiDl~~~~~~~----ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~ 80 (150)
.-++|+.+||.|++...-.- .+.-.|+..+........|...+.-.|..- --.-+-.-...|..-+++.-+|.
T Consensus 266 nssVIlFLNKkDlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd---~dKii~SHfTcATDT~NIRfVFa 342 (359)
T KOG0085|consen 266 NSSVILFLNKKDLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPD---SDKIIYSHFTCATDTENIRFVFA 342 (359)
T ss_pred CCceEEEechhhhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCC---ccceeeeeeeecccchhHHHHHH
Confidence 34899999999997654321 111112211111111112222222221000 00112345667888899999999
Q ss_pred HHHHHH-HHHHhhh
Q psy7275 81 LIKLAG-EDYEKNY 93 (150)
Q Consensus 81 ~I~e~~-~ey~~~y 93 (150)
++...+ +-+..+|
T Consensus 343 aVkDtiLq~~LkE~ 356 (359)
T KOG0085|consen 343 AVKDTILQLNLKEY 356 (359)
T ss_pred HHHHHHHHhhhHhh
Confidence 987654 5555444
No 350
>PRK10947 global DNA-binding transcriptional dual regulator H-NS; Provisional
Probab=39.28 E-value=58 Score=24.82 Aligned_cols=49 Identities=12% Similarity=0.093 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHhhCCCCCCCCccc
Q psy7275 75 TEELLQLIKLAGEDYEKNYRVEWIRLRDEKAKSEQLEKREQHFALPTPQPLWASC 129 (150)
Q Consensus 75 ideL~~~I~e~~~ey~~~y~pe~e~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 129 (150)
++++.+.+..+++|-..+...+ . .+.++.+++-+++..+|...||++.-
T Consensus 26 Lee~~ekl~~vv~er~ee~~~~----~--~~~~er~~kl~~~r~~m~~~Gis~~e 74 (135)
T PRK10947 26 LEEMLEKLEVVVNERREEESAA----A--AEVEERTRKLQQYREMLIADGIDPNE 74 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----H--HHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 3444555555555554443221 2 22223334555666667777777653
No 351
>KOG2743|consensus
Probab=38.93 E-value=37 Score=30.04 Aligned_cols=16 Identities=13% Similarity=0.162 Sum_probs=12.6
Q ss_pred EeeecCCCCCchhhHH
Q psy7275 10 ELVVGIDIVNHKYAIE 25 (150)
Q Consensus 10 lV~NKiDl~~~~~~~e 25 (150)
+++||+|+++++....
T Consensus 216 II~NKtDli~~e~~~~ 231 (391)
T KOG2743|consen 216 IIMNKTDLVSEEEVKK 231 (391)
T ss_pred eeeccccccCHHHHHH
Confidence 6789999999876543
No 352
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=38.17 E-value=54 Score=28.02 Aligned_cols=19 Identities=21% Similarity=0.413 Sum_probs=15.6
Q ss_pred CCcEEEeecCCCCCHHHHHHH
Q psy7275 61 TLKVVGFSSVSGEGTEELLQL 81 (150)
Q Consensus 61 ~l~vv~VSA~TGeGideL~~~ 81 (150)
++|+..|| +|+++++|...
T Consensus 286 ~~Pi~~v~--~Gq~~~Dl~~~ 304 (318)
T PRK10416 286 GIPIKFIG--VGEGIDDLQPF 304 (318)
T ss_pred CCCEEEEe--CCCChhhCccC
Confidence 68999998 99999887544
No 353
>PF14331 ImcF-related_N: ImcF-related N-terminal domain
Probab=37.03 E-value=24 Score=29.18 Aligned_cols=17 Identities=12% Similarity=0.235 Sum_probs=14.7
Q ss_pred CCCCCEEEeeecCCCCC
Q psy7275 3 DTGFPYTELVVGIDIVN 19 (150)
Q Consensus 3 k~~lP~IlV~NKiDl~~ 19 (150)
..++|+-+||+|+|+++
T Consensus 67 g~~~PVYvv~Tk~D~l~ 83 (266)
T PF14331_consen 67 GVRLPVYVVFTKCDLLP 83 (266)
T ss_pred CCCCCeEeeeECCCccc
Confidence 46789999999999864
No 354
>PF13148 DUF3987: Protein of unknown function (DUF3987)
Probab=35.28 E-value=2.2e+02 Score=23.88 Aligned_cols=43 Identities=19% Similarity=0.189 Sum_probs=28.8
Q ss_pred EEeecCCCCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q psy7275 65 VGFSSVSGEGTEELLQLIKLAGEDYEKNYRVEWIRLRDEKAKS 107 (150)
Q Consensus 65 v~VSA~TGeGideL~~~I~e~~~ey~~~y~pe~e~~~~~~~~~ 107 (150)
+.|-|-.|+|-..+...+..-+.++++....++++..++.+.+
T Consensus 42 ~~~va~sG~gKS~~~~~~~~pl~~~~~~~~~~~~~~~~~y~~~ 84 (378)
T PF13148_consen 42 TLIVAESGSGKSPVLRAAMKPLKEIEKELREQYEEELEEYEAE 84 (378)
T ss_pred EEeecCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678899999888888877766666655555555555444433
No 355
>COG2759 MIS1 Formyltetrahydrofolate synthetase [Nucleotide transport and metabolism]
Probab=35.10 E-value=43 Score=31.00 Aligned_cols=22 Identities=32% Similarity=0.250 Sum_probs=18.8
Q ss_pred eecCCCCCHHHHHHHHHHHHHH
Q psy7275 67 FSSVSGEGTEELLQLIKLAGED 88 (150)
Q Consensus 67 VSA~TGeGideL~~~I~e~~~e 88 (150)
+=|+-|+|-.+|-+.+.+.+++
T Consensus 406 vwakGg~Gg~eLA~kVv~~~~~ 427 (554)
T COG2759 406 VWAKGGEGGIELAKKVVEAIEQ 427 (554)
T ss_pred hhhccCccHHHHHHHHHHHHhC
Confidence 3478899999999999998875
No 356
>KOG1249|consensus
Probab=35.05 E-value=13 Score=34.57 Aligned_cols=25 Identities=24% Similarity=0.259 Sum_probs=21.9
Q ss_pred cEEEeecCCCCCHHHHHHHHHHHHH
Q psy7275 63 KVVGFSSVSGEGTEELLQLIKLAGE 87 (150)
Q Consensus 63 ~vv~VSA~TGeGideL~~~I~e~~~ 87 (150)
.+..+|++||.|+++|...|..+..
T Consensus 187 ~~~~~r~ktgyg~eeLI~~lvd~~d 211 (572)
T KOG1249|consen 187 HVDLIRAKTGYGIEELIVMLVDIVD 211 (572)
T ss_pred hhhhhhhhhcccHHHHHHHhhheee
Confidence 6788999999999999999987665
No 357
>KOG1772|consensus
Probab=34.80 E-value=1.3e+02 Score=22.36 Aligned_cols=38 Identities=32% Similarity=0.425 Sum_probs=26.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q psy7275 71 SGEGTEELLQLIKLAGEDYEKNYRVEWIRLRDEKAKSE 108 (150)
Q Consensus 71 TGeGideL~~~I~e~~~ey~~~y~pe~e~~~~~~~~~~ 108 (150)
.+.||..|+.+=.++.+-...-.+--..|+++.+++.+
T Consensus 4 q~qGIqQLLqAEK~A~e~V~~ARk~K~~RLKQAKeEA~ 41 (108)
T KOG1772|consen 4 QSQGIQQLLQAEKRAAEKVEEARKRKLRRLKQAKEEAE 41 (108)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78899999998777766555555555666666665543
No 358
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=34.17 E-value=27 Score=30.12 Aligned_cols=14 Identities=7% Similarity=0.088 Sum_probs=12.0
Q ss_pred EEeeecCCCCCchh
Q psy7275 9 TELVVGIDIVNHKY 22 (150)
Q Consensus 9 IlV~NKiDl~~~~~ 22 (150)
+||+||+|+++.+.
T Consensus 177 ~IvlnK~Dl~~~~~ 190 (341)
T TIGR02475 177 LVILNKADLLDAAG 190 (341)
T ss_pred EEEEeccccCCHHH
Confidence 78999999988764
No 359
>PRK14974 cell division protein FtsY; Provisional
Probab=33.29 E-value=71 Score=27.65 Aligned_cols=19 Identities=16% Similarity=0.427 Sum_probs=15.3
Q ss_pred CCcEEEeecCCCCCHHHHHHH
Q psy7275 61 TLKVVGFSSVSGEGTEELLQL 81 (150)
Q Consensus 61 ~l~vv~VSA~TGeGideL~~~ 81 (150)
++++.+++ +|+|+++|...
T Consensus 306 ~~Pi~~i~--~Gq~v~Dl~~~ 324 (336)
T PRK14974 306 GKPILFLG--VGQGYDDLIPF 324 (336)
T ss_pred CcCEEEEe--CCCChhhcccC
Confidence 57888887 89999887643
No 360
>PF01031 Dynamin_M: Dynamin central region; InterPro: IPR000375 Dynamin is a microtubule-associated force-producing protein of 100 Kd which is involved in the production of microtubule bundles. At the N terminus of dynamin is a GTPase domain (see IPR001401 from INTERPRO), and at the C terminus is a PH domain (see IPR001849 from INTERPRO). Between these two domains lies a central region of unknown function, which this entry represents.; GO: 0005525 GTP binding; PDB: 3ZVR_A 2AKA_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D 1JWY_B 1JX2_B 3SZR_A ....
Probab=32.99 E-value=1.2e+02 Score=25.15 Aligned_cols=39 Identities=10% Similarity=-0.061 Sum_probs=31.1
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q psy7275 69 SVSGEGTEELLQLIKLAGEDYEKNYRVEWIRLRDEKAKS 107 (150)
Q Consensus 69 A~TGeGideL~~~I~e~~~ey~~~y~pe~e~~~~~~~~~ 107 (150)
-....|+.-|...+.+.+.+..+...|.+...-+.+.++
T Consensus 53 ~~~~~G~~~L~~~L~~~L~~~I~~~LP~l~~~I~~~l~~ 91 (295)
T PF01031_consen 53 PADRCGTPALRKRLSELLVEHIRKSLPSLKSEIQKKLQE 91 (295)
T ss_dssp GGGGSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 457899999999999999999999999876555444433
No 361
>PF04518 Effector_1: Effector from type III secretion system; InterPro: IPR007606 This family contains several uncharacterised chlamydial proteins.
Probab=32.95 E-value=1.8e+02 Score=26.04 Aligned_cols=93 Identities=19% Similarity=0.203 Sum_probs=53.4
Q ss_pred HHHHHHhhc---hhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCC---CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q psy7275 32 VFQEALEAD---SSYISNLTRSMSLALDEFYSTLKVVGFSSVSGE---GTEELLQLIKLAGEDYEKNYRVEWIRLRDEKA 105 (150)
Q Consensus 32 ~f~eal~~e---~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGe---GideL~~~I~e~~~ey~~~y~pe~e~~~~~~~ 105 (150)
.|...+..+ +.+.++..+.|..+...|-..--.+..|+.-|. |.+.|......+...|.+ |.++.+...+
T Consensus 142 ~~L~~L~~elnfsN~aa~~~N~ll~~i~~F~~a~vYynl~sYl~Q~~~g~~~F~g~~~~a~~~l~~----E~~~~~~di~ 217 (379)
T PF04518_consen 142 DFLNPLGSELNFSNLAANYGNPLLEIINSFNNASVYYNLSSYLGQSKMGTDNFPGSYFMALAKLEK----EREQIRRDIK 217 (379)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHHHHcCcCcceeeehHHHHhhhccchhccCCcHHHHHHHHHH----HHHHHHHHHH
Confidence 444555444 456667777777666677554455666766665 666666666665554433 3344444444
Q ss_pred HHHHH--HHHHhHhhCCCCCCCCcc
Q psy7275 106 KSEQL--EKREQHFALPTPQPLWAS 128 (150)
Q Consensus 106 ~~~~~--~~~~~~~~l~~~~~~~~~ 128 (150)
.++++ .-++++.+...|=+|+++
T Consensus 218 ~~~~A~~~l~~~~~~V~~d~~lT~~ 242 (379)
T PF04518_consen 218 SCERAKAVLNKQLARVKADAKLTSE 242 (379)
T ss_pred HHHHHHHHHHHHHHHHhcccccCHH
Confidence 33333 245667777777666654
No 362
>PF10683 DBD_Tnp_Hermes: Hermes transposase DNA-binding domain ; InterPro: IPR018473 This domain confers specific DNA-binding on Hermes transposase [].; PDB: 2BW3_B.
Probab=32.17 E-value=26 Score=23.89 Aligned_cols=31 Identities=35% Similarity=0.489 Sum_probs=22.7
Q ss_pred cEEEeecCCCCCHHHHHHHHHHHHHHHHhhh
Q psy7275 63 KVVGFSSVSGEGTEELLQLIKLAGEDYEKNY 93 (150)
Q Consensus 63 ~vv~VSA~TGeGideL~~~I~e~~~ey~~~y 93 (150)
.+-+.|+++|.|+.+|...+.++-..|-+.-
T Consensus 27 dcRpfsiv~gsGfk~la~~li~IGA~yG~~V 57 (68)
T PF10683_consen 27 DCRPFSIVSGSGFKKLAQFLINIGATYGENV 57 (68)
T ss_dssp CT--GGGGG-HHHHHHHHHHHHHHHHH-S-B
T ss_pred cCCcceeeccccHHHHHHHHHHHhHHhcccC
Confidence 4457799999999999999999999887543
No 363
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=31.47 E-value=81 Score=27.78 Aligned_cols=15 Identities=13% Similarity=-0.226 Sum_probs=12.7
Q ss_pred CCCCCEEEeeecCCC
Q psy7275 3 DTGFPYTELVVGIDI 17 (150)
Q Consensus 3 k~~lP~IlV~NKiDl 17 (150)
.+..|+|+|+|+.|.
T Consensus 197 lt~KP~i~v~N~~e~ 211 (364)
T PRK09601 197 LTAKPVLYVANVDED 211 (364)
T ss_pred cccCCeEEEEECCcc
Confidence 456799999999984
No 364
>PF02731 SKIP_SNW: SKIP/SNW domain; InterPro: IPR004015 SKIP (SKI-interacting protein) is an essential spliceosomal component and transcriptional coregulator, which may provide regulatory coupling of transcription initiation and splicing []. SKIP was identified in a yeast 2-hybrid screen, where it was shown to interact with both the cellular and viral forms of SKI through the highly conserved region on SKIP known as the SNW domain []. SKIP is now known to interact with a number of other proteins as well. SKIP potentiates the activity of important transcription factors, such as vitamin D receptor, CBF1 (RBP-Jkappa), Smad2/3, and MyoD. It works with Ski in overcoming pRb-mediated cell cycle arrest, and it is targeted by the viral transactivators EBNA2 and E7 []. This entry represents the SNW domain.; GO: 0000398 nuclear mRNA splicing, via spliceosome, 0005681 spliceosomal complex
Probab=30.44 E-value=1.9e+02 Score=22.78 Aligned_cols=46 Identities=22% Similarity=0.247 Sum_probs=20.5
Q ss_pred CCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHhhC
Q psy7275 73 EGTEELLQLIKLAGEDYEKNYRVEWIRLRDEKAKSEQLEKREQHFAL 119 (150)
Q Consensus 73 eGideL~~~I~e~~~ey~~~y~pe~e~~~~~~~~~~~~~~~~~~~~l 119 (150)
++|..|-++|..+-.+..++-.- ..+++++.++++++.+++.|..|
T Consensus 105 d~Fa~LseAL~~Ad~~aReev~~-R~~~~~~~a~ke~~~kEe~lr~l 150 (158)
T PF02731_consen 105 DKFAKLSEALYIADRKAREEVRQ-RAEMQKELAEKEKEEKEEKLREL 150 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666665544443333311 22233333444444455544443
No 365
>PF02096 60KD_IMP: 60Kd inner membrane protein; InterPro: IPR001708 This family of proteins is required for the insertion of integral membrane proteins into cellular membranes. Many of these integral membrane proteins are associated with respiratory chain complexes, for example a large number of members of this family play an essential role in the activity and assembly of cytochrome c oxidase. Stage III sporulation protein J (SP3J) is a probable lipoprotein, rich in basic and hydrophobic amino acids. Mutations in the protein abolish the transcription of prespore-specific genes transcribed by the sigma G form of RNA polymerase []. SP3J could be involved in a signal transduction pathway coupling gene expression in the prespore to events in the mother cell, or it may be necessary for essential metabolic interactions between the two cells []. The protein shows a high degree of similarity to Bacillus subtilis YQJG, to yeast OXA1 and also to bacterial 60 kDa inner-membrane proteins [, , , ]. ; GO: 0051205 protein insertion into membrane, 0016021 integral to membrane
Probab=30.36 E-value=1.1e+02 Score=23.66 Aligned_cols=41 Identities=7% Similarity=0.065 Sum_probs=28.0
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHhHhhCCCCCCCCcc
Q psy7275 87 EDYEKNYRVEWIRLRDEKAKSEQLEKREQHFALPTPQPLWAS 128 (150)
Q Consensus 87 ~ey~~~y~pe~e~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 128 (150)
..-....+|++++++++..+..+ +..++..++.|+-|+.+.
T Consensus 29 ~~k~~~~~P~l~~i~~k~~~~~~-~~~~~~~~l~k~~~~~p~ 69 (198)
T PF02096_consen 29 SAKMQELQPELKEIQEKYKEDQQ-KMQQEMQKLYKKHGVNPL 69 (198)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHH-HHHHHHHHHHHHcCCCcH
Confidence 34456678999988888854433 355566778888887765
No 366
>KOG0447|consensus
Probab=30.20 E-value=1.1e+02 Score=29.51 Aligned_cols=29 Identities=14% Similarity=0.219 Sum_probs=20.2
Q ss_pred CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHh
Q psy7275 5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALE 38 (150)
Q Consensus 5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~ 38 (150)
+.-.|+|++|+|+.... +.+++.++..++
T Consensus 479 GrRTIfVLTKVDlAEkn-----lA~PdRI~kIle 507 (980)
T KOG0447|consen 479 GRRTIFVLTKVDLAEKN-----VASPSRIQQIIE 507 (980)
T ss_pred CCeeEEEEeecchhhhc-----cCCHHHHHHHHh
Confidence 44689999999985433 336666666665
No 367
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=30.04 E-value=95 Score=25.80 Aligned_cols=19 Identities=21% Similarity=0.328 Sum_probs=15.1
Q ss_pred CCcEEEeecCCCCCHHHHHHH
Q psy7275 61 TLKVVGFSSVSGEGTEELLQL 81 (150)
Q Consensus 61 ~l~vv~VSA~TGeGideL~~~ 81 (150)
++++..++ +|+++++|...
T Consensus 244 ~~Pi~~~~--~Gq~~~dl~~~ 262 (272)
T TIGR00064 244 KLPIKFIG--VGEKIDDLAPF 262 (272)
T ss_pred CcCEEEEe--CCCChHhCccC
Confidence 57888888 99999887543
No 368
>TIGR03592 yidC_oxa1_cterm membrane protein insertase, YidC/Oxa1 family, C-terminal domain. This model describes full-length from some species, and the C-terminal region only from other species, of the YidC/Oxa1 family of proteins. This domain appears to be univeral among bacteria (although absent from Archaea). The well-characterized YidC protein from Escherichia coli and its close homologs contain a large N-terminal periplasmic domain in addition to the region modeled here.
Probab=29.00 E-value=1.1e+02 Score=23.66 Aligned_cols=40 Identities=3% Similarity=0.019 Sum_probs=27.5
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHhHhhCCCCCCCCcc
Q psy7275 88 DYEKNYRVEWIRLRDEKAKSEQLEKREQHFALPTPQPLWAS 128 (150)
Q Consensus 88 ey~~~y~pe~e~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 128 (150)
.-....+|++++++++..+++ ++.++++.++.|.-|+.|.
T Consensus 29 ~km~~i~P~~~~i~~k~k~~~-~~~~~e~~~l~k~~~~~p~ 68 (181)
T TIGR03592 29 RKMQELQPKLKEIQEKYKDDP-QKLQQEMMKLYKEEGVNPL 68 (181)
T ss_pred HHHHHhhHHHHHHHHHHHhhH-HHHHHHHHHHHHHhCCCcH
Confidence 445567899988887776543 3455567778788787763
No 369
>PRK13507 formate--tetrahydrofolate ligase; Provisional
Probab=28.36 E-value=66 Score=30.31 Aligned_cols=58 Identities=19% Similarity=0.157 Sum_probs=35.2
Q ss_pred CCCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcE--EEeecCCCCCHHHHHH
Q psy7275 3 DTGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKV--VGFSSVSGEGTEELLQ 80 (150)
Q Consensus 3 k~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~v--v~VSA~TGeGideL~~ 80 (150)
++++|+||++|+-.--...+ .+++++ ... + ...++ ..+=|.=|+|-.+|-+
T Consensus 399 ~fg~pvVVaiN~F~~Dt~~E-i~~l~~------~~~------------------~--~g~~~~v~~~wa~GGeGa~eLA~ 451 (587)
T PRK13507 399 KSGINPVVCINAFYTDTHAE-IAIVRR------LAE------------------Q--AGARVAVSRHWEKGGEGALELAD 451 (587)
T ss_pred HcCCCeEEEeCCCCCCCHHH-HHHHHH------HHH------------------H--cCCCEEEechhhccchhHHHHHH
Confidence 57899999999976433222 222211 111 1 12333 3333567888999999
Q ss_pred HHHHHHH
Q psy7275 81 LIKLAGE 87 (150)
Q Consensus 81 ~I~e~~~ 87 (150)
.|.+.++
T Consensus 452 ~Vv~a~e 458 (587)
T PRK13507 452 AVIDACN 458 (587)
T ss_pred HHHHHhh
Confidence 9988876
No 370
>PF14989 CCDC32: Coiled-coil domain containing 32
Probab=28.32 E-value=69 Score=24.95 Aligned_cols=52 Identities=10% Similarity=-0.070 Sum_probs=36.9
Q ss_pred hhhHHHHHHHHHHHH------------HHHHHHHHHhHhhCCCCCCCCcccCCCcccCCCCCCCC
Q psy7275 91 KNYRVEWIRLRDEKA------------KSEQLEKREQHFALPTPQPLWASCDRGNCNLPTDKVPK 143 (150)
Q Consensus 91 ~~y~pe~e~~~~~~~------------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 143 (150)
..|..-||++.+... ..-+.++++++.+|..+ +...++..|.+-+|+.....
T Consensus 55 ~~YLasLE~KL~rik~~~~~vtsKemL~sL~~aK~d~~~rlL~~-~~~~~~~~~~~~~D~p~~~~ 118 (148)
T PF14989_consen 55 EVYLASLERKLKRIKGKNREVTSKEMLRSLSQAKEDCWDRLLSS-GNPSEFFEDDLDSDEPILEH 118 (148)
T ss_pred HHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHHHHHHHHHcC-CCcchhccCccccccchhhh
Confidence 446666666655433 33467788999999998 88888888888777765543
No 371
>KOG4423|consensus
Probab=27.82 E-value=1.7e+02 Score=24.31 Aligned_cols=24 Identities=8% Similarity=-0.151 Sum_probs=18.8
Q ss_pred cEEEeecCCCCCHHHHHHHHHHHH
Q psy7275 63 KVVGFSSVSGEGTEELLQLIKLAG 86 (150)
Q Consensus 63 ~vv~VSA~TGeGideL~~~I~e~~ 86 (150)
....+|++...+++|.-..+.++.
T Consensus 170 gwtets~Kenkni~Ea~r~lVe~~ 193 (229)
T KOG4423|consen 170 GWTETSAKENKNIPEAQRELVEKI 193 (229)
T ss_pred ceeeeccccccChhHHHHHHHHHH
Confidence 667899999999998776665543
No 372
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=27.77 E-value=2e+02 Score=26.59 Aligned_cols=58 Identities=16% Similarity=0.259 Sum_probs=37.1
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK 83 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~ 83 (150)
.+.|||+++|-.+-.+.+.. .+.+ -|++-| +.++++|+.. .-.-+++...+.
T Consensus 179 igKPFvillNs~~P~s~et~--------~L~~------------------eL~ekY-~vpVlpvnc~-~l~~~DI~~Il~ 230 (492)
T PF09547_consen 179 IGKPFVILLNSTKPYSEETQ--------ELAE------------------ELEEKY-DVPVLPVNCE-QLREEDITRILE 230 (492)
T ss_pred hCCCEEEEEeCCCCCCHHHH--------HHHH------------------HHHHHh-CCcEEEeehH-HcCHHHHHHHHH
Confidence 57899999999885544331 1111 233445 5788887653 345677777777
Q ss_pred HHHHHH
Q psy7275 84 LAGEDY 89 (150)
Q Consensus 84 e~~~ey 89 (150)
+.+-||
T Consensus 231 ~vLyEF 236 (492)
T PF09547_consen 231 EVLYEF 236 (492)
T ss_pred HHHhcC
Confidence 777776
No 373
>cd00477 FTHFS Formyltetrahydrofolate synthetase (FTHFS) catalyzes the ATP-dependent activation of formate ion via its addition to the N10 position of tetrahydrofolate. FTHFS is a highly expressed key enzyme in both the Wood-Ljungdahl pathway of autotrophic CO2 fixation (acetogenesis) and the glycine synthase/reductase pathways of purinolysis. The key physiological role of this enzyme in acetogens is to catalyze the formylation of tetrahydrofolate, an initial step in the reduction of carbon dioxide and other one-carbon precursors to acetate. In purinolytic organisms, the enzymatic reaction is reversed, liberating formate from 10-formyltetrahydrofolate with concurrent production of ATP.
Probab=27.06 E-value=86 Score=29.17 Aligned_cols=58 Identities=19% Similarity=0.178 Sum_probs=35.7
Q ss_pred CCCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcE--EEeecCCCCCHHHHHH
Q psy7275 3 DTGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKV--VGFSSVSGEGTEELLQ 80 (150)
Q Consensus 3 k~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~v--v~VSA~TGeGideL~~ 80 (150)
++++|+||++|+---..+.+ .++++ +... + .+.++ ..+=+.=|+|-.+|-+
T Consensus 354 ~fg~p~VVaiN~F~~Dt~~E-i~~v~------~~~~------------------~--~g~~~~~~~~~~~GG~Ga~eLA~ 406 (524)
T cd00477 354 KFGVPVVVAINKFSTDTDAE-LALVR------KLAE------------------E--AGAFVAVSEHWAEGGKGAVELAE 406 (524)
T ss_pred HcCCCeEEEecCCCCCCHHH-HHHHH------HHHH------------------H--cCCCEEEehhhhhhhhhHHHHHH
Confidence 57899999999977433322 12221 1111 1 12333 2334677899999999
Q ss_pred HHHHHHH
Q psy7275 81 LIKLAGE 87 (150)
Q Consensus 81 ~I~e~~~ 87 (150)
.|.+.++
T Consensus 407 ~Vi~a~e 413 (524)
T cd00477 407 AVIEACE 413 (524)
T ss_pred HHHHHhc
Confidence 9998887
No 374
>PRK13506 formate--tetrahydrofolate ligase; Provisional
Probab=26.40 E-value=47 Score=31.23 Aligned_cols=60 Identities=18% Similarity=0.281 Sum_probs=35.9
Q ss_pred CCCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCc--EEEeecCCCCCHHHHHH
Q psy7275 3 DTGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLK--VVGFSSVSGEGTEELLQ 80 (150)
Q Consensus 3 k~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~--vv~VSA~TGeGideL~~ 80 (150)
++++|+||++|+----...+ .++++++ .. +. ...+ +..+=+.=|+|-.+|-+
T Consensus 391 ~fg~pvVVaiN~F~~Dt~~E-i~~~~~~------~~------------------~~-~~~~~~~~~~wa~GGeGa~eLA~ 444 (578)
T PRK13506 391 QYGLPVVVAINRFPTDTDEE-LEWLKEA------VL------------------LT-GAFGCEISEAFAQGGEGATALAQ 444 (578)
T ss_pred HcCCCeEEEecCCCCCCHHH-HHHHHHH------HH------------------Hc-CCCcEEEechhhccchhHHHHHH
Confidence 57899999999976432222 2222211 11 10 0122 23334677899999999
Q ss_pred HHHHHHHH
Q psy7275 81 LIKLAGED 88 (150)
Q Consensus 81 ~I~e~~~e 88 (150)
.|.+.+++
T Consensus 445 ~Vv~a~e~ 452 (578)
T PRK13506 445 AVVRACEQ 452 (578)
T ss_pred HHHHHhhC
Confidence 99988873
No 375
>PF12220 U1snRNP70_N: U1 small nuclear ribonucleoprotein of 70kDa MW N terminal; InterPro: IPR022023 This domain is found in eukaryotes. This domain is about 90 amino acids in length. This domain is found associated with PF00076 from PFAM. This domain is part of U1 snRNP, which is the pre-mRNA binding protein of the penta-snRNP spliceosome complex. It extends over a distance of 180 A from its RNA binding domain, wraps around the core domain of U1 snRNP consisting of the seven Sm proteins and finally contacts U1-C, which is crucial for 5'-splice-site recognition.
Probab=26.40 E-value=68 Score=22.54 Aligned_cols=17 Identities=12% Similarity=0.112 Sum_probs=11.4
Q ss_pred CCCHHHHHHHHHHHHHH
Q psy7275 72 GEGTEELLQLIKLAGED 88 (150)
Q Consensus 72 GeGideL~~~I~e~~~e 88 (150)
=.||..++..+....++
T Consensus 37 itGvs~~l~~~~~~~~~ 53 (94)
T PF12220_consen 37 ITGVSQYLSEFEDYKDE 53 (94)
T ss_pred CCcHHHHHHHHhccccC
Confidence 46788888766665543
No 376
>KOG2627|consensus
Probab=26.05 E-value=79 Score=28.96 Aligned_cols=29 Identities=21% Similarity=0.255 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q psy7275 80 QLIKLAGEDYEKNYRVEWIRLRDEKAKSE 108 (150)
Q Consensus 80 ~~I~e~~~ey~~~y~pe~e~~~~~~~~~~ 108 (150)
..|..+-.-.+++|+|+++|++++++=.+
T Consensus 46 ~YIEgl~kIIqrDyFPDl~KLrAq~dyLe 74 (488)
T KOG2627|consen 46 KYIEGLSKIIQRDYFPDLEKLRAQKDYLE 74 (488)
T ss_pred HHHHHHHHHHHHhhcCcHHHHHHHHHHHH
Confidence 33444444557899999999998665433
No 377
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=25.81 E-value=2e+02 Score=21.75 Aligned_cols=29 Identities=21% Similarity=0.145 Sum_probs=23.2
Q ss_pred CCcEEEeecCCCCCHHHHHHHHHHHHHHH
Q psy7275 61 TLKVVGFSSVSGEGTEELLQLIKLAGEDY 89 (150)
Q Consensus 61 ~l~vv~VSA~TGeGideL~~~I~e~~~ey 89 (150)
+.++|++|++.|..+..+.+.+....++-
T Consensus 52 ~adiVglS~l~~~~~~~~~~~~~~l~~~g 80 (134)
T TIGR01501 52 KADAILVSSLYGHGEIDCKGLRQKCDEAG 80 (134)
T ss_pred CCCEEEEecccccCHHHHHHHHHHHHHCC
Confidence 57999999999999988777766665543
No 378
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=24.80 E-value=2.2e+02 Score=21.34 Aligned_cols=29 Identities=21% Similarity=0.140 Sum_probs=23.7
Q ss_pred CCcEEEeecCCCCCHHHHHHHHHHHHHHH
Q psy7275 61 TLKVVGFSSVSGEGTEELLQLIKLAGEDY 89 (150)
Q Consensus 61 ~l~vv~VSA~TGeGideL~~~I~e~~~ey 89 (150)
+..+|++|++.+..+..+.+.+....+.-
T Consensus 50 ~adiVglS~L~t~~~~~~~~~~~~l~~~g 78 (128)
T cd02072 50 DADAILVSSLYGHGEIDCKGLREKCDEAG 78 (128)
T ss_pred CCCEEEEeccccCCHHHHHHHHHHHHHCC
Confidence 57999999999999988887777665543
No 379
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=24.50 E-value=45 Score=22.57 Aligned_cols=15 Identities=7% Similarity=-0.152 Sum_probs=11.2
Q ss_pred CCCCCEEEeeecCCC
Q psy7275 3 DTGFPYTELVVGIDI 17 (150)
Q Consensus 3 k~~lP~IlV~NKiDl 17 (150)
+..+|.+++.||.|+
T Consensus 75 k~dl~~~~~~nk~dl 89 (124)
T smart00010 75 KSDLPILVGGNRDVL 89 (124)
T ss_pred CCCCcEEEEeechhh
Confidence 345778888888886
No 380
>PF07352 Phage_Mu_Gam: Bacteriophage Mu Gam like protein; InterPro: IPR009951 The Gam protein, originally characterised in Bacteriophage Mu, protects linear double stranded DNA from exonuclease degradation in vitro and in vivo []. This protein is also found in many bacterial species as part of a suspected prophage. Further studies have shown that Gam is a functional counterpart of the eukaryotic Ku protein, which has key roles in DNA repair and in certain transposition events. Gam displays DNA binding characteristics remarkably similar to those of human Ku []. In addition, Gam can interfere with Ty1 retrotransposition in Saccharomyces cerevisiae (Baker's yeast). These data reveal structural and functional parallels between bacteriophage Gam and eukaryotic Ku and suggest that their functions have been evolutionarily conserved [].; GO: 0003690 double-stranded DNA binding, 0042262 DNA protection; PDB: 2P2U_B.
Probab=24.28 E-value=95 Score=23.37 Aligned_cols=19 Identities=21% Similarity=0.230 Sum_probs=5.3
Q ss_pred CCCcccCCCCCCCCCCCcc
Q psy7275 130 DRGNCNLPTDKVPKTKGRK 148 (150)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~ 148 (150)
..=++.||+|++.-.++..
T Consensus 68 k~Ks~~l~~G~v~~R~~~~ 86 (149)
T PF07352_consen 68 KKKSLKLPFGTVGFRKSTP 86 (149)
T ss_dssp ----EE-SS-EE-------
T ss_pred cceEEEcCCeeEEEEecCC
Confidence 4567889999887655543
No 381
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=23.99 E-value=1.8e+02 Score=20.30 Aligned_cols=35 Identities=6% Similarity=-0.079 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhCCCCCCCCcc
Q psy7275 94 RVEWIRLRDEKAKSEQLEKREQHFALPTPQPLWAS 128 (150)
Q Consensus 94 ~pe~e~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 128 (150)
..+|+.+.++.+++.......++-.+.+.|+++|.
T Consensus 17 iae~Q~rlK~Le~qk~E~EN~EIv~~VR~~~mtp~ 51 (83)
T PF14193_consen 17 IAELQARLKELEAQKTEAENLEIVQMVRSMKMTPE 51 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 34455555556666666666667777777777763
No 382
>PF08565 CDC37_M: Cdc37 Hsp90 binding domain; InterPro: IPR013874 Cdc37 is a molecular chaperone required for the activity of numerous eukaryotic protein kinases. This entry corresponds to the Hsp90 chaperone (heat shock protein 90) binding domain of Cdc37 []. It is found between the N-terminal Cdc37 domain IPR013855 from INTERPRO, which is predominantly involved in kinase binding, and the C-terminal domain of Cdc37 IPR013873 from INTERPRO whose function is unclear. ; PDB: 1US7_B 2W0G_A 2K5B_B.
Probab=23.68 E-value=3.6e+02 Score=21.14 Aligned_cols=36 Identities=17% Similarity=0.342 Sum_probs=22.9
Q ss_pred CCCHHHHHHHHHH-----HHHHHHhhhHHHHHHHHHHHHHH
Q psy7275 72 GEGTEELLQLIKL-----AGEDYEKNYRVEWIRLRDEKAKS 107 (150)
Q Consensus 72 GeGideL~~~I~e-----~~~ey~~~y~pe~e~~~~~~~~~ 107 (150)
..|+.-||..|.. ....|..+..--++|++..-.+.
T Consensus 125 r~~v~~FF~r~~~~~~~~~~~~F~~dv~~~~~rIk~Ra~~~ 165 (173)
T PF08565_consen 125 RDGVRLFFKRIKTPGHPEAKKVFEDDVEAFYERIKERAKEK 165 (173)
T ss_dssp GGCHHHHHHHHTT-SSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999988 33444555555555555444333
No 383
>KOG1707|consensus
Probab=23.45 E-value=1.4e+02 Score=28.46 Aligned_cols=72 Identities=13% Similarity=0.079 Sum_probs=40.8
Q ss_pred CCCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHH
Q psy7275 3 DTGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLI 82 (150)
Q Consensus 3 k~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I 82 (150)
..++|.+.|..|+|+-... .+|---+++|...+ .-.+.+.+|..+ .|=.++|..|
T Consensus 524 ~~~~Pc~~va~K~dlDe~~--Q~~~iqpde~~~~~----------------------~i~~P~~~S~~~-~~s~~lf~kL 578 (625)
T KOG1707|consen 524 LYKIPCLMVATKADLDEVP--QRYSIQPDEFCRQL----------------------GLPPPIHISSKT-LSSNELFIKL 578 (625)
T ss_pred ccCCceEEEeeccccchhh--hccCCChHHHHHhc----------------------CCCCCeeeccCC-CCCchHHHHH
Confidence 4788999999999984332 22322222222211 112667788885 3337888888
Q ss_pred HHHHHHHHhhhHHHHHHHHH
Q psy7275 83 KLAGEDYEKNYRVEWIRLRD 102 (150)
Q Consensus 83 ~e~~~ey~~~y~pe~e~~~~ 102 (150)
..++. |.. .|+++...+
T Consensus 579 ~~~A~-~Ph--~~~~~~~~~ 595 (625)
T KOG1707|consen 579 ATMAQ-YPH--IPRIEEEKS 595 (625)
T ss_pred HHhhh-CCC--ccccccccc
Confidence 77653 222 555544433
No 384
>KOG0468|consensus
Probab=23.42 E-value=40 Score=32.82 Aligned_cols=15 Identities=13% Similarity=0.341 Sum_probs=12.9
Q ss_pred CCCCEEEeeecCCCC
Q psy7275 4 TGFPYTELVVGIDIV 18 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~ 18 (150)
-++|+++|+||+|.+
T Consensus 248 ~~~~i~vviNKiDRL 262 (971)
T KOG0468|consen 248 NRLPIVVVINKVDRL 262 (971)
T ss_pred ccCcEEEEEehhHHH
Confidence 468999999999963
No 385
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=23.29 E-value=72 Score=27.43 Aligned_cols=18 Identities=11% Similarity=0.231 Sum_probs=14.6
Q ss_pred CCCCCEEEeeecCCCCCc
Q psy7275 3 DTGFPYTELVVGIDIVNH 20 (150)
Q Consensus 3 k~~lP~IlV~NKiDl~~~ 20 (150)
++++|+.+|+||.++-..
T Consensus 212 ~f~ip~~iViNr~~~g~s 229 (284)
T COG1149 212 HFGIPTGIVINRYNLGDS 229 (284)
T ss_pred HhCCceEEEEecCCCCch
Confidence 578999999999975444
No 386
>PTZ00256 glutathione peroxidase; Provisional
Probab=22.01 E-value=2.3e+02 Score=21.63 Aligned_cols=28 Identities=7% Similarity=-0.102 Sum_probs=14.6
Q ss_pred CCCEEEeeecCCCCCchhhHHHhhcHHHHH
Q psy7275 5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQ 34 (150)
Q Consensus 5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~ 34 (150)
+.|+|+++|=.. -+..+...|..+..++
T Consensus 40 Gk~vvlv~n~at--wCp~C~~e~p~l~~l~ 67 (183)
T PTZ00256 40 GKKAIIVVNVAC--KCGLTSDHYTQLVELY 67 (183)
T ss_pred CCcEEEEEEECC--CCCchHHHHHHHHHHH
Confidence 457788888322 2344444454444433
No 387
>KOG4348|consensus
Probab=21.76 E-value=2.4e+02 Score=26.25 Aligned_cols=51 Identities=18% Similarity=0.144 Sum_probs=37.4
Q ss_pred EeecCCCCCHHHHHHHHHHHH---HHHHhhhHHHHHHHHHHHHHHHHHHHHHhH
Q psy7275 66 GFSSVSGEGTEELLQLIKLAG---EDYEKNYRVEWIRLRDEKAKSEQLEKREQH 116 (150)
Q Consensus 66 ~VSA~TGeGideL~~~I~e~~---~ey~~~y~pe~e~~~~~~~~~~~~~~~~~~ 116 (150)
..-+.....+++|...|.+.+ +-...+-..|+++++++.++++.-+-.=+|
T Consensus 562 e~~~~~k~s~delr~qi~el~~ive~lk~~~~kel~kl~~dleeek~mr~~lem 615 (627)
T KOG4348|consen 562 ETDDVKKNSLDELRAQIIELLCIVEALKKDHGKELEKLRKDLEEEKTMRSNLEM 615 (627)
T ss_pred chhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHh
Confidence 334455667899999998844 566677789999999999887766644333
No 388
>PRK00182 tatB sec-independent translocase; Provisional
Probab=21.16 E-value=1.9e+02 Score=22.86 Aligned_cols=36 Identities=11% Similarity=0.105 Sum_probs=27.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q psy7275 71 SGEGTEELLQLIKLAGEDYEKNYRVEWIRLRDEKAK 106 (150)
Q Consensus 71 TGeGideL~~~I~e~~~ey~~~y~pe~e~~~~~~~~ 106 (150)
-|.++.++...+....++...+..||++.+++...+
T Consensus 33 lg~~ir~~R~~~~~~k~el~~Elg~e~~elrk~l~~ 68 (160)
T PRK00182 33 VRAALLAARTAINNAKQQLDGDFGEEFDEFRKPLNQ 68 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 456677888888888888888888888888776544
No 389
>PF11274 DUF3074: Protein of unknown function (DUF3074)
Probab=20.85 E-value=94 Score=24.53 Aligned_cols=34 Identities=21% Similarity=0.093 Sum_probs=28.2
Q ss_pred EeecCC---CCCHHHHHHHHHHHHHHHHhhhHHHHHH
Q psy7275 66 GFSSVS---GEGTEELLQLIKLAGEDYEKNYRVEWIR 99 (150)
Q Consensus 66 ~VSA~T---GeGideL~~~I~e~~~ey~~~y~pe~e~ 99 (150)
.+|-.. +.++++|...+...-.+++..|-|.+..
T Consensus 4 RrS~H~~~~~~~~~~~~~~L~~~h~e~E~~yi~~i~~ 40 (184)
T PF11274_consen 4 RRSVHEDSAGASFDEFRKGLKDEHSENEKEYIPGIGS 40 (184)
T ss_pred eeeecCCCCCCCHHHHHHHHHhhhHHHHHHhccccce
Confidence 456666 9999999999999999999999776543
No 390
>PRK00766 hypothetical protein; Provisional
Probab=20.53 E-value=2.4e+02 Score=22.72 Aligned_cols=26 Identities=12% Similarity=0.213 Sum_probs=20.3
Q ss_pred cEEEeecCCCCCHHHHHHHHHHHHHHH
Q psy7275 63 KVVGFSSVSGEGTEELLQLIKLAGEDY 89 (150)
Q Consensus 63 ~vv~VSA~TGeGideL~~~I~e~~~ey 89 (150)
..+.||. .|..+++-.+.+......|
T Consensus 145 ~~vyvs~-~gi~l~~A~~lv~~~~~~~ 170 (194)
T PRK00766 145 GPLYIQA-AGIDPETAAEIVRLTSTRS 170 (194)
T ss_pred CCEEEEE-cCCCHHHHHHHHHHhccCC
Confidence 4478999 9999999888888776533
No 391
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=20.30 E-value=58 Score=27.79 Aligned_cols=12 Identities=17% Similarity=0.277 Sum_probs=10.4
Q ss_pred EEeeecCCCCCc
Q psy7275 9 TELVVGIDIVNH 20 (150)
Q Consensus 9 IlV~NKiDl~~~ 20 (150)
++|+||+|+++.
T Consensus 154 ~IvlnK~Dl~~~ 165 (318)
T PRK11537 154 RILLTKTDVAGE 165 (318)
T ss_pred EEEEeccccCCH
Confidence 689999999864
Done!