Query psy7275
Match_columns 150
No_of_seqs 231 out of 1061
Neff 5.6
Searched_HMMs 29240
Date Fri Aug 16 22:31:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7275.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7275hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dsu_A GTPase KRAS, isoform 2B 98.7 1.9E-08 6.7E-13 73.6 4.5 64 4-93 108-171 (189)
2 1yrb_A ATP(GTP)binding protein 98.6 1.5E-07 5.1E-12 73.6 9.0 83 4-89 170-258 (262)
3 3pqc_A Probable GTP-binding pr 98.6 8E-08 2.8E-12 70.6 6.5 62 4-87 132-193 (195)
4 2bov_A RAla, RAS-related prote 98.6 1E-07 3.5E-12 71.0 7.1 60 4-88 118-177 (206)
5 3p32_A Probable GTPase RV1496/ 98.5 4.2E-07 1.4E-11 76.0 9.6 64 5-89 217-285 (355)
6 3iev_A GTP-binding protein ERA 98.5 1.7E-08 5.7E-13 82.9 1.0 97 3-123 120-217 (308)
7 4dhe_A Probable GTP-binding pr 98.5 2.6E-07 8.9E-12 70.1 6.6 63 4-87 143-210 (223)
8 2nzj_A GTP-binding protein REM 98.5 3.6E-07 1.2E-11 66.0 7.0 59 5-88 111-169 (175)
9 3q72_A GTP-binding protein RAD 98.5 3.9E-07 1.3E-11 65.5 6.9 60 4-88 105-164 (166)
10 3con_A GTPase NRAS; structural 98.5 5E-07 1.7E-11 66.7 7.7 62 4-91 125-186 (190)
11 3tw8_B RAS-related protein RAB 98.4 4E-07 1.4E-11 65.9 6.6 61 5-90 113-173 (181)
12 4bas_A ADP-ribosylation factor 98.4 5.4E-07 1.9E-11 66.7 7.1 62 5-89 127-190 (199)
13 2gf0_A GTP-binding protein DI- 98.4 1.1E-07 3.8E-12 70.5 3.2 65 5-95 114-178 (199)
14 1c1y_A RAS-related protein RAP 98.4 5.5E-07 1.9E-11 64.4 6.4 59 4-86 107-165 (167)
15 2ce2_X GTPase HRAS; signaling 98.4 1.1E-06 3.9E-11 62.1 7.7 57 5-87 108-164 (166)
16 2iwr_A Centaurin gamma 1; ANK 98.4 4.9E-07 1.7E-11 65.9 5.9 29 61-89 142-170 (178)
17 2fn4_A P23, RAS-related protei 98.4 5.8E-07 2E-11 65.1 6.1 62 4-90 113-174 (181)
18 2a9k_A RAS-related protein RAL 98.4 7.3E-07 2.5E-11 64.9 6.6 60 4-88 122-181 (187)
19 2wjg_A FEOB, ferrous iron tran 98.4 8.8E-08 3E-12 70.6 1.7 73 4-102 111-185 (188)
20 1g16_A RAS-related protein SEC 98.4 8.8E-07 3E-11 63.4 6.9 59 4-88 107-165 (170)
21 3t1o_A Gliding protein MGLA; G 98.4 1.1E-06 3.6E-11 64.5 7.4 58 4-88 134-192 (198)
22 3q85_A GTP-binding protein REM 98.4 8.6E-07 2.9E-11 63.8 6.7 58 5-87 109-166 (169)
23 3tkl_A RAS-related protein RAB 98.4 1.2E-06 4.2E-11 64.6 7.6 61 4-89 120-180 (196)
24 2bme_A RAB4A, RAS-related prot 98.3 5.9E-07 2E-11 65.8 5.7 62 4-90 114-175 (186)
25 3a1s_A Iron(II) transport prot 98.3 1.8E-07 6.2E-12 75.1 3.1 74 3-102 108-187 (258)
26 1u8z_A RAS-related protein RAL 98.3 5.9E-07 2E-11 63.9 5.5 59 4-87 108-166 (168)
27 1z08_A RAS-related protein RAB 98.3 3.9E-07 1.3E-11 65.5 4.6 60 4-88 110-169 (170)
28 2fu5_C RAS-related protein RAB 98.3 1E-06 3.4E-11 64.5 6.8 59 4-87 112-170 (183)
29 2qu8_A Putative nucleolar GTP- 98.3 1.4E-06 4.7E-11 67.1 7.9 67 5-91 142-208 (228)
30 3bc1_A RAS-related protein RAB 98.3 1.2E-06 4.1E-11 63.9 7.2 60 4-88 126-185 (195)
31 1kao_A RAP2A; GTP-binding prot 98.3 3.8E-07 1.3E-11 64.9 4.2 59 4-87 107-165 (167)
32 1svi_A GTP-binding protein YSX 98.3 8.1E-07 2.8E-11 65.7 6.1 61 4-86 133-193 (195)
33 1x3s_A RAS-related protein RAB 98.3 9.3E-07 3.2E-11 65.0 6.1 64 4-93 120-183 (195)
34 2gf9_A RAS-related protein RAB 98.3 9.2E-07 3.1E-11 65.5 6.0 60 4-88 126-185 (189)
35 1ky3_A GTP-binding protein YPT 98.3 1.7E-06 5.8E-11 62.6 7.3 61 4-87 117-177 (182)
36 3kkq_A RAS-related protein M-R 98.3 2E-06 6.8E-11 62.9 7.8 59 4-87 122-181 (183)
37 1z0f_A RAB14, member RAS oncog 98.3 1.2E-06 4E-11 63.3 6.4 58 4-86 119-176 (179)
38 2g6b_A RAS-related protein RAB 98.3 1.3E-06 4.3E-11 63.5 6.4 60 4-88 115-174 (180)
39 1vg8_A RAS-related protein RAB 98.3 2E-06 6.7E-11 64.2 7.3 59 4-87 116-174 (207)
40 3t5g_A GTP-binding protein RHE 98.3 7E-07 2.4E-11 65.3 4.7 62 4-90 110-171 (181)
41 3cph_A RAS-related protein SEC 98.3 1.7E-06 5.8E-11 64.8 6.9 58 4-87 124-181 (213)
42 3reg_A RHO-like small GTPase; 98.3 9.1E-07 3.1E-11 65.8 5.3 61 4-87 126-187 (194)
43 2lkc_A Translation initiation 98.3 1.6E-07 5.4E-12 68.3 1.1 67 4-89 106-172 (178)
44 1mh1_A RAC1; GTP-binding, GTPa 98.3 1.2E-06 4.2E-11 63.7 5.9 70 5-86 109-178 (186)
45 1wms_A RAB-9, RAB9, RAS-relate 98.3 1.9E-06 6.5E-11 62.4 6.9 59 4-87 115-173 (177)
46 2p67_A LAO/AO transport system 98.3 5E-06 1.7E-10 69.1 10.3 64 5-89 194-262 (341)
47 1upt_A ARL1, ADP-ribosylation 98.3 1.6E-06 5.5E-11 62.3 6.4 62 4-87 107-168 (171)
48 2yc2_C IFT27, small RAB-relate 98.3 2E-06 6.9E-11 63.8 6.9 61 4-89 131-193 (208)
49 2cxx_A Probable GTP-binding pr 98.3 2E-06 6.7E-11 63.0 6.8 64 4-88 121-184 (190)
50 2bcg_Y Protein YP2, GTP-bindin 98.3 2.3E-06 7.9E-11 64.2 7.3 59 4-87 112-170 (206)
51 2h57_A ADP-ribosylation factor 98.3 1E-06 3.5E-11 65.3 5.2 62 4-88 125-187 (190)
52 2efe_B Small GTP-binding prote 98.3 1.9E-06 6.6E-11 62.6 6.6 58 4-86 116-173 (181)
53 3dz8_A RAS-related protein RAB 98.3 1.4E-06 4.7E-11 64.8 5.9 60 4-88 127-186 (191)
54 2atx_A Small GTP binding prote 98.3 3.8E-06 1.3E-10 62.3 8.3 70 5-86 122-191 (194)
55 1zbd_A Rabphilin-3A; G protein 98.3 2E-06 6.7E-11 64.3 6.8 60 4-88 112-171 (203)
56 2f7s_A C25KG, RAS-related prot 98.3 2.4E-06 8.1E-11 64.6 7.3 59 4-87 140-198 (217)
57 4djt_A GTP-binding nuclear pro 98.2 1.1E-06 3.7E-11 66.6 5.3 62 5-91 117-178 (218)
58 3ihw_A Centg3; RAS, centaurin, 98.2 1.2E-06 4E-11 65.5 5.4 28 61-88 153-180 (184)
59 2oil_A CATX-8, RAS-related pro 98.2 2.1E-06 7.3E-11 63.6 6.7 59 4-87 129-187 (193)
60 2a5j_A RAS-related protein RAB 98.2 2.4E-06 8.1E-11 63.5 6.9 59 4-87 125-183 (191)
61 3oes_A GTPase rhebl1; small GT 98.2 7.4E-07 2.5E-11 67.0 4.1 64 4-92 128-191 (201)
62 4gzl_A RAS-related C3 botulinu 98.2 1E-06 3.5E-11 66.7 4.9 70 4-85 133-202 (204)
63 4dkx_A RAS-related protein RAB 98.2 1E-06 3.6E-11 69.1 5.0 59 4-87 117-175 (216)
64 2j0v_A RAC-like GTP-binding pr 98.2 1.1E-06 3.6E-11 66.3 4.9 28 62-89 154-181 (212)
65 2e87_A Hypothetical protein PH 98.2 2.9E-06 9.9E-11 70.6 8.0 62 5-93 280-341 (357)
66 2gco_A H9, RHO-related GTP-bin 98.2 3.5E-06 1.2E-10 63.4 7.7 70 5-86 129-198 (201)
67 1r2q_A RAS-related protein RAB 98.2 1.4E-06 4.8E-11 62.2 5.1 58 4-86 110-167 (170)
68 2o52_A RAS-related protein RAB 98.2 2.2E-06 7.7E-11 64.5 6.5 60 4-88 129-188 (200)
69 2wsm_A Hydrogenase expression/ 98.2 7.3E-07 2.5E-11 67.8 3.7 63 5-90 154-216 (221)
70 3iby_A Ferrous iron transport 98.2 7.9E-08 2.7E-12 77.2 -1.8 57 3-85 108-164 (256)
71 1wb1_A Translation elongation 98.2 1.9E-06 6.4E-11 75.3 6.6 64 4-87 124-188 (482)
72 3clv_A RAB5 protein, putative; 98.2 4.3E-06 1.5E-10 61.1 7.6 27 61-87 177-203 (208)
73 2j1l_A RHO-related GTP-binding 98.2 2.3E-06 8E-11 65.2 6.4 73 4-88 137-209 (214)
74 3bwd_D RAC-like GTP-binding pr 98.2 1.7E-06 5.8E-11 62.9 5.3 25 62-86 155-179 (182)
75 2q3h_A RAS homolog gene family 98.2 4.4E-06 1.5E-10 62.2 7.6 28 62-89 169-196 (201)
76 1z2a_A RAS-related protein RAB 98.2 1.6E-06 5.4E-11 62.0 4.9 57 5-86 109-165 (168)
77 2hf9_A Probable hydrogenase ni 98.2 1.3E-06 4.5E-11 66.6 4.6 62 5-89 164-225 (226)
78 4dcu_A GTP-binding protein ENG 98.2 3.5E-06 1.2E-10 72.4 7.7 70 4-93 305-374 (456)
79 1zj6_A ADP-ribosylation factor 98.2 7.3E-07 2.5E-11 66.0 2.9 67 4-93 116-183 (187)
80 3sjy_A Translation initiation 98.2 1.1E-06 3.9E-11 74.4 4.5 61 6-86 130-190 (403)
81 2hup_A RAS-related protein RAB 98.2 3.1E-06 1.1E-10 63.9 6.4 60 4-88 133-193 (201)
82 2il1_A RAB12; G-protein, GDP, 98.2 1.9E-06 6.4E-11 64.4 5.0 60 4-87 130-189 (192)
83 2fv8_A H6, RHO-related GTP-bin 98.2 4.2E-06 1.4E-10 63.2 7.0 70 5-86 129-198 (207)
84 1moz_A ARL1, ADP-ribosylation 98.2 3.8E-06 1.3E-10 61.2 6.5 61 4-87 118-179 (183)
85 2erx_A GTP-binding protein DI- 98.2 2.2E-06 7.5E-11 61.3 5.0 58 4-86 108-165 (172)
86 1z0j_A RAB-22, RAS-related pro 98.2 2.7E-06 9.3E-11 60.9 5.4 57 4-86 110-167 (170)
87 3cbq_A GTP-binding protein REM 98.2 5.5E-06 1.9E-10 62.5 7.4 59 4-87 129-187 (195)
88 2fh5_B SR-beta, signal recogni 98.2 2.5E-06 8.6E-11 64.3 5.4 25 61-85 183-213 (214)
89 3k53_A Ferrous iron transport 98.2 6.1E-07 2.1E-11 71.6 2.1 73 6-104 110-188 (271)
90 1ksh_A ARF-like protein 2; sma 98.1 3.5E-06 1.2E-10 61.9 6.0 62 4-88 118-180 (186)
91 2y8e_A RAB-protein 6, GH09086P 98.1 2.3E-06 7.9E-11 61.7 4.8 58 4-86 118-175 (179)
92 1zd9_A ADP-ribosylation factor 98.1 1.7E-06 5.8E-11 64.3 4.1 61 4-86 123-183 (188)
93 2x77_A ADP-ribosylation factor 98.1 3.8E-06 1.3E-10 62.0 5.9 61 4-88 122-184 (189)
94 2atv_A RERG, RAS-like estrogen 98.1 4E-06 1.4E-10 62.5 6.1 60 4-88 131-191 (196)
95 1fzq_A ADP-ribosylation factor 98.1 2.4E-06 8.1E-11 63.4 4.7 62 4-87 116-177 (181)
96 2hxs_A RAB-26, RAS-related pro 98.1 3.9E-06 1.3E-10 60.8 5.8 27 61-87 146-172 (178)
97 3b1v_A Ferrous iron uptake tra 98.1 7.3E-07 2.5E-11 72.4 1.9 72 4-101 106-182 (272)
98 2g3y_A GTP-binding protein GEM 98.1 4.7E-06 1.6E-10 64.9 6.4 57 5-86 145-201 (211)
99 1r8s_A ADP-ribosylation factor 98.1 2.7E-06 9.3E-11 60.8 4.7 59 4-86 100-160 (164)
100 3i8s_A Ferrous iron transport 98.1 2.2E-07 7.4E-12 75.0 -1.6 72 4-101 111-185 (274)
101 2yv5_A YJEQ protein; hydrolase 98.1 2.4E-06 8.3E-11 70.1 4.7 54 4-84 109-165 (302)
102 2fg5_A RAB-22B, RAS-related pr 98.1 3.2E-06 1.1E-10 63.0 4.9 58 4-86 127-184 (192)
103 2ew1_A RAS-related protein RAB 98.1 4.3E-06 1.5E-10 63.7 5.7 59 4-87 130-188 (201)
104 2wji_A Ferrous iron transport 98.1 1.4E-06 4.9E-11 63.6 2.8 26 61-86 138-163 (165)
105 1puj_A YLQF, conserved hypothe 98.1 5.2E-06 1.8E-10 67.7 6.4 58 4-88 49-106 (282)
106 1f6b_A SAR1; gtpases, N-termin 98.1 4.2E-06 1.5E-10 63.1 5.3 24 61-84 172-195 (198)
107 3th5_A RAS-related C3 botulinu 97.3 5.2E-07 1.8E-11 67.8 0.0 69 5-85 134-202 (204)
108 2cjw_A GTP-binding protein GEM 98.1 1.5E-05 5.1E-10 60.0 8.0 27 61-87 145-171 (192)
109 1ek0_A Protein (GTP-binding pr 98.0 4.3E-06 1.5E-10 59.6 4.5 60 4-85 107-166 (170)
110 3h2y_A GTPase family protein; 98.0 6.7E-06 2.3E-10 69.4 6.4 57 5-85 96-157 (368)
111 3cpj_B GTP-binding protein YPT 98.0 5.2E-06 1.8E-10 63.5 5.1 60 4-88 117-176 (223)
112 1m2o_B GTP-binding protein SAR 98.0 4.3E-06 1.5E-10 62.6 4.6 66 4-84 123-188 (190)
113 2dyk_A GTP-binding protein; GT 98.0 4.6E-06 1.6E-10 59.3 4.4 53 4-85 107-159 (161)
114 2b6h_A ADP-ribosylation factor 98.0 5.4E-06 1.8E-10 62.1 4.9 59 4-86 129-189 (192)
115 2hjg_A GTP-binding protein ENG 98.0 1.4E-05 4.7E-10 68.3 8.0 70 4-93 285-354 (436)
116 2p5s_A RAS and EF-hand domain 98.0 1E-05 3.5E-10 60.5 6.2 26 61-86 170-195 (199)
117 1s0u_A EIF-2-gamma, translatio 98.0 4E-06 1.4E-10 71.1 4.3 60 7-86 137-196 (408)
118 2h17_A ADP-ribosylation factor 98.0 5.4E-06 1.9E-10 61.0 4.4 58 4-84 121-179 (181)
119 1mky_A Probable GTP-binding pr 98.0 1.2E-05 4.1E-10 68.7 7.1 70 4-93 291-360 (439)
120 2wkq_A NPH1-1, RAS-related C3 98.0 9E-06 3.1E-10 64.9 5.9 70 5-86 259-328 (332)
121 1lnz_A SPO0B-associated GTP-bi 98.0 1.1E-06 3.6E-11 74.0 0.4 61 4-91 273-333 (342)
122 3gj0_A GTP-binding nuclear pro 98.0 4.7E-06 1.6E-10 63.4 3.9 57 5-88 119-175 (221)
123 3c5h_A Glucocorticoid receptor 98.0 7.2E-06 2.5E-10 65.0 5.1 57 4-86 197-253 (255)
124 2www_A Methylmalonic aciduria 98.0 4.1E-05 1.4E-09 64.0 9.9 28 62-89 253-280 (349)
125 1u0l_A Probable GTPase ENGC; p 98.0 7E-06 2.4E-10 67.1 5.1 55 4-84 114-169 (301)
126 1z06_A RAS-related protein RAB 98.0 1.1E-05 3.7E-10 59.6 5.7 58 3-86 125-186 (189)
127 3c5c_A RAS-like protein 12; GD 98.0 5.7E-06 1.9E-10 61.6 4.0 58 4-86 126-184 (187)
128 3o47_A ADP-ribosylation factor 98.0 8.9E-06 3.1E-10 67.3 5.5 61 5-87 266-326 (329)
129 3lvq_E ARF-GAP with SH3 domain 97.9 4.9E-06 1.7E-10 71.6 3.9 66 4-91 422-487 (497)
130 1kk1_A EIF2gamma; initiation o 97.9 6.3E-06 2.1E-10 69.8 4.5 60 7-86 139-198 (410)
131 2gj8_A MNME, tRNA modification 97.9 2.5E-06 8.6E-11 63.0 1.8 51 4-86 114-164 (172)
132 3ec1_A YQEH GTPase; atnos1, at 97.9 1.1E-05 3.8E-10 68.0 5.7 58 5-86 98-160 (369)
133 3q3j_B RHO-related GTP-binding 97.9 7.8E-06 2.7E-10 62.5 4.0 28 61-88 174-203 (214)
134 1wf3_A GTP-binding protein; GT 97.9 7.5E-07 2.6E-11 73.2 -2.4 55 5-87 117-172 (301)
135 1ega_A Protein (GTP-binding pr 97.8 3E-06 1E-10 69.3 0.4 60 4-88 115-175 (301)
136 3dpu_A RAB family protein; roc 97.8 1.9E-05 6.5E-10 69.0 5.5 59 5-88 150-208 (535)
137 1xzp_A Probable tRNA modificat 97.8 0.00011 3.8E-09 64.4 10.2 55 5-87 350-404 (482)
138 3cnl_A YLQF, putative uncharac 97.8 1.2E-05 4.1E-10 64.9 3.8 53 5-85 46-98 (262)
139 1m7b_A RND3/RHOE small GTP-bin 97.8 2.4E-05 8.2E-10 57.6 4.8 26 61-86 155-181 (184)
140 2rcn_A Probable GTPase ENGC; Y 97.8 2.5E-05 8.5E-10 66.5 5.1 51 4-81 159-212 (358)
141 2qm8_A GTPase/ATPase; G protei 97.8 0.00028 9.4E-09 58.8 11.4 28 62-89 235-262 (337)
142 3l0i_B RAS-related protein RAB 97.7 3E-06 1E-10 63.5 -0.6 58 4-86 137-194 (199)
143 2qtf_A Protein HFLX, GTP-bindi 97.7 4.2E-05 1.4E-09 64.6 6.3 64 4-89 291-355 (364)
144 3gee_A MNME, tRNA modification 97.7 3.5E-05 1.2E-09 67.5 5.9 55 5-87 343-397 (476)
145 3j2k_7 ERF3, eukaryotic polype 97.7 3.1E-05 1.1E-09 66.6 5.4 63 3-80 152-217 (439)
146 3geh_A MNME, tRNA modification 97.7 1.9E-05 6.6E-10 68.8 4.1 54 6-88 331-384 (462)
147 1nrj_B SR-beta, signal recogni 97.7 3.1E-05 1.1E-09 58.4 4.6 82 3-85 118-217 (218)
148 1g7s_A Translation initiation 97.7 2.9E-05 9.8E-10 69.8 4.8 28 62-89 192-219 (594)
149 2elf_A Protein translation elo 97.7 4.2E-05 1.4E-09 64.7 5.5 28 61-88 148-180 (370)
150 3llu_A RAS-related GTP-binding 97.7 4.9E-05 1.7E-09 56.7 5.1 65 4-85 128-194 (196)
151 1gwn_A RHO-related GTP-binding 97.7 3.6E-05 1.2E-09 58.6 4.4 26 61-86 176-202 (205)
152 3izy_P Translation initiation 97.7 7.2E-06 2.5E-10 73.1 0.3 65 3-86 102-166 (537)
153 2hjg_A GTP-binding protein ENG 97.6 2.2E-05 7.4E-10 67.1 1.8 55 2-87 108-164 (436)
154 2zej_A Dardarin, leucine-rich 97.5 0.00013 4.6E-09 53.8 5.8 24 64-87 153-177 (184)
155 3qq5_A Small GTP-binding prote 97.5 2.9E-05 9.8E-10 67.2 2.3 96 4-126 139-268 (423)
156 1mky_A Probable GTP-binding pr 97.5 9.3E-05 3.2E-09 63.2 5.0 25 63-87 141-165 (439)
157 3t5d_A Septin-7; GTP-binding p 97.5 4.8E-05 1.6E-09 60.7 2.9 58 5-85 144-201 (274)
158 3p26_A Elongation factor 1 alp 97.5 9.6E-05 3.3E-09 64.0 4.9 18 61-78 211-228 (483)
159 2xtp_A GTPase IMAP family memb 97.5 1.2E-05 4.2E-10 63.0 -0.7 24 65-88 185-208 (260)
160 3cb4_D GTP-binding protein LEP 97.4 0.00016 5.5E-09 65.1 5.8 58 4-86 122-180 (599)
161 1t9h_A YLOQ, probable GTPase E 97.4 2.5E-05 8.4E-10 65.1 0.2 26 3-28 115-144 (307)
162 1udx_A The GTP-binding protein 97.4 0.00033 1.1E-08 60.4 7.1 58 5-89 269-326 (416)
163 3tr5_A RF-3, peptide chain rel 97.4 0.00062 2.1E-08 60.2 8.9 24 63-86 252-275 (528)
164 2ywe_A GTP-binding protein LEP 97.3 0.00017 5.8E-09 65.1 5.0 58 4-86 124-182 (600)
165 2aka_B Dynamin-1; fusion prote 97.3 4.2E-05 1.4E-09 60.6 0.7 60 4-86 191-251 (299)
166 1zo1_I IF2, translation initia 97.3 2.9E-05 9.9E-10 68.7 -0.7 62 4-84 102-163 (501)
167 2c78_A Elongation factor TU-A; 97.3 0.00011 3.7E-09 62.1 2.5 16 4-19 126-142 (405)
168 3mca_A HBS1, elongation factor 97.3 8E-05 2.8E-09 66.6 1.8 15 62-76 357-371 (592)
169 1pui_A ENGB, probable GTP-bind 97.2 0.00055 1.9E-08 51.0 5.8 63 4-87 136-198 (210)
170 1r5b_A Eukaryotic peptide chai 97.2 0.0003 1E-08 60.9 4.5 19 61-79 225-243 (467)
171 4dcu_A GTP-binding protein ENG 97.2 0.0002 7E-09 61.4 3.2 53 3-86 129-183 (456)
172 1zun_B Sulfate adenylate trans 97.1 0.00017 5.9E-09 61.5 2.7 20 62-81 198-217 (434)
173 3r7w_A Gtpase1, GTP-binding pr 97.1 0.00036 1.2E-08 56.8 4.2 64 4-85 114-178 (307)
174 1d2e_A Elongation factor TU (E 97.1 0.00028 9.6E-09 59.5 3.6 24 61-84 158-191 (397)
175 2j69_A Bacterial dynamin-like 97.1 0.0026 9E-08 57.8 10.2 26 62-87 285-324 (695)
176 1f60_A Elongation factor EEF1A 97.1 0.00024 8.2E-09 61.4 2.8 19 61-79 185-203 (458)
177 2f9l_A RAB11B, member RAS onco 97.0 0.0016 5.6E-08 48.4 7.0 60 4-88 109-168 (199)
178 3izq_1 HBS1P, elongation facto 97.0 0.00042 1.4E-08 62.2 4.0 19 61-79 345-363 (611)
179 2qag_A Septin-2, protein NEDD5 96.9 0.00041 1.4E-08 58.1 2.9 59 4-86 173-231 (361)
180 1zcb_A G alpha I/13; GTP-bindi 96.9 0.00042 1.5E-08 58.6 2.7 26 61-86 326-351 (362)
181 3lxx_A GTPase IMAP family memb 96.9 0.00075 2.6E-08 52.2 3.8 63 6-88 146-214 (239)
182 2xtz_A Guanine nucleotide-bind 96.8 0.00031 1.1E-08 59.3 1.3 25 62-86 319-343 (354)
183 1jny_A EF-1-alpha, elongation 96.8 0.00075 2.6E-08 57.6 3.6 19 62-80 187-205 (435)
184 3lxw_A GTPase IMAP family memb 96.7 0.0027 9.1E-08 50.0 6.0 63 5-88 139-208 (247)
185 1cip_A Protein (guanine nucleo 96.7 0.0006 2E-08 57.4 2.3 26 61-86 317-342 (353)
186 2dy1_A Elongation factor G; tr 96.7 0.0022 7.6E-08 57.9 5.9 25 62-86 248-272 (665)
187 2h5e_A Peptide chain release f 96.7 0.0066 2.2E-07 53.6 8.8 25 62-86 252-276 (529)
188 1oix_A RAS-related protein RAB 96.6 0.0035 1.2E-07 46.6 5.5 25 61-85 165-189 (191)
189 3avx_A Elongation factor TS, e 96.6 0.0025 8.7E-08 62.0 5.8 17 4-20 410-427 (1289)
190 2x2e_A Dynamin-1; nitration, h 96.4 0.0016 5.6E-08 53.8 3.3 59 4-85 196-255 (353)
191 1jwy_B Dynamin A GTPase domain 96.4 0.026 9.1E-07 44.8 10.2 62 3-88 196-262 (315)
192 2qnr_A Septin-2, protein NEDD5 96.4 0.0018 6.1E-08 52.8 3.0 58 5-86 155-212 (301)
193 1dar_A EF-G, elongation factor 96.3 0.0034 1.1E-07 57.1 4.7 25 62-86 256-280 (691)
194 3zvr_A Dynamin-1; hydrolase, D 96.2 0.004 1.4E-07 57.8 5.0 57 3-85 215-275 (772)
195 2rdo_7 EF-G, elongation factor 96.2 0.017 5.9E-07 52.6 8.7 25 62-86 262-286 (704)
196 2xex_A Elongation factor G; GT 96.1 0.016 5.3E-07 52.7 7.9 25 62-86 254-278 (693)
197 3vqt_A RF-3, peptide chain rel 96.0 0.021 7.1E-07 50.6 8.2 25 62-86 269-293 (548)
198 1azs_C GS-alpha; complex (lyas 96.0 0.0024 8.3E-08 54.9 2.0 25 62-86 359-383 (402)
199 3l82_B F-box only protein 4; T 95.7 0.014 4.8E-07 47.1 5.3 60 4-86 161-221 (227)
200 3j25_A Tetracycline resistance 95.7 0.011 3.8E-07 53.1 5.0 24 62-85 213-236 (638)
201 3l2o_B F-box only protein 4; s 95.1 0.028 9.6E-07 47.2 5.3 60 4-86 246-306 (312)
202 1wxq_A GTP-binding protein; st 94.9 0.0038 1.3E-07 53.2 -0.6 63 4-93 213-276 (397)
203 2qag_C Septin-7; cell cycle, c 94.8 0.017 5.7E-07 49.8 3.3 58 4-84 166-223 (418)
204 3ohm_A Guanine nucleotide-bind 94.6 0.015 5.2E-07 48.6 2.4 26 61-86 291-316 (327)
205 4fn5_A EF-G 1, elongation fact 94.5 0.084 2.9E-06 47.9 7.3 25 62-86 265-289 (709)
206 3t34_A Dynamin-related protein 93.7 0.01 3.5E-07 48.9 -0.3 18 4-21 202-219 (360)
207 4a9a_A Ribosome-interacting GT 93.0 0.11 3.6E-06 44.2 4.8 50 5-86 249-298 (376)
208 3r7w_B Gtpase2, GTP-binding pr 92.5 0.15 5.3E-06 42.8 5.1 61 4-85 105-171 (331)
209 1tq4_A IIGP1, interferon-induc 92.5 0.13 4.4E-06 44.2 4.7 33 62-94 225-259 (413)
210 4fid_A G protein alpha subunit 92.4 0.03 1E-06 47.1 0.6 27 61-87 301-327 (340)
211 2dby_A GTP-binding protein; GD 90.1 0.13 4.3E-06 43.5 2.2 30 61-93 235-264 (368)
212 1h65_A Chloroplast outer envel 83.4 1.1 3.7E-05 35.0 4.0 16 6-21 155-170 (270)
213 3def_A T7I23.11 protein; chlor 82.9 1.5 5.1E-05 34.1 4.6 15 6-20 152-166 (262)
214 2j37_W Signal recognition part 80.6 0.57 1.9E-05 41.2 1.5 23 63-85 287-310 (504)
215 1n0u_A EF-2, elongation factor 78.0 0.42 1.4E-05 44.3 -0.2 16 3-18 148-163 (842)
216 2qpt_A EH domain-containing pr 72.8 1.4 4.9E-05 38.7 1.9 19 4-22 217-235 (550)
217 1jal_A YCHF protein; nucleotid 69.8 12 0.00042 31.3 7.0 16 3-18 197-212 (363)
218 2qag_B Septin-6, protein NEDD5 62.5 3.8 0.00013 35.3 2.4 20 4-23 175-194 (427)
219 1ni3_A YCHF GTPase, YCHF GTP-b 61.8 4.1 0.00014 34.5 2.4 14 3-16 222-235 (392)
220 3nr7_A DNA-binding protein H-N 58.4 13 0.00043 25.3 4.0 48 75-128 29-76 (86)
221 3szr_A Interferon-induced GTP- 52.1 14 0.00047 32.8 4.3 50 71-124 291-340 (608)
222 3dm5_A SRP54, signal recogniti 49.9 12 0.00042 32.2 3.5 15 7-21 241-255 (443)
223 2v3c_C SRP54, signal recogniti 48.8 1.5 5.2E-05 37.5 -2.4 26 63-88 285-311 (432)
224 2e87_A Hypothetical protein PH 41.9 5.9 0.0002 32.2 0.2 24 61-84 166-189 (357)
225 2ohf_A Protein OLA1, GTP-bindi 32.0 55 0.0019 27.7 4.7 14 3-16 220-233 (396)
226 3kl4_A SRP54, signal recogniti 27.8 32 0.0011 29.4 2.6 13 7-19 240-252 (433)
227 1g9p_A Omega-atracotoxin-HV2A; 27.5 14 0.00046 22.2 0.1 14 124-137 19-32 (45)
228 3h2y_A GTPase family protein; 26.1 20 0.00069 29.5 1.0 19 4-22 272-290 (368)
229 2p2u_A HOST-nuclease inhibitor 24.9 2.1E+02 0.0072 21.1 6.8 64 77-148 34-100 (171)
230 2j1d_G DAAM1, disheveled-assoc 21.4 2.5E+02 0.0086 23.9 7.0 21 73-93 372-392 (483)
231 1v9d_A Diaphanous protein homo 21.2 2.1E+02 0.0072 23.1 6.3 42 75-118 298-339 (340)
232 2doh_C Fragment, plasminogen-b 21.1 1.2E+02 0.0039 16.7 3.1 21 95-121 8-28 (30)
233 3sop_A Neuronal-specific septi 21.1 53 0.0018 25.7 2.5 18 6-23 141-158 (270)
234 4aq3_A Apoptosis regulator BCL 20.5 91 0.0031 23.2 3.6 38 66-103 43-80 (169)
No 1
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=98.65 E-value=1.9e-08 Score=73.65 Aligned_cols=64 Identities=6% Similarity=0.099 Sum_probs=44.8
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK 83 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~ 83 (150)
.++|+|+|+||+|+.+.....+.. ..+. ..+ +.+++.+||++|.|+++++..|.
T Consensus 108 ~~~p~i~v~nK~Dl~~~~~~~~~~---~~~~---------------------~~~--~~~~~~~Sa~~g~gi~~l~~~l~ 161 (189)
T 4dsu_A 108 EDVPMVLVGNKCDLPSRTVDTKQA---QDLA---------------------RSY--GIPFIETSAKTRQGVDDAFYTLV 161 (189)
T ss_dssp SCCCEEEEEECTTSSSCSSCHHHH---HHHH---------------------HHH--TCCEEECCTTTCTTHHHHHHHHH
T ss_pred CCCcEEEEEECccCcccccCHHHH---HHHH---------------------HHc--CCeEEEEeCCCCCCHHHHHHHHH
Confidence 478999999999997543321111 0000 011 46899999999999999999999
Q ss_pred HHHHHHHhhh
Q psy7275 84 LAGEDYEKNY 93 (150)
Q Consensus 84 e~~~ey~~~y 93 (150)
+.+.+....+
T Consensus 162 ~~~~~~~~~~ 171 (189)
T 4dsu_A 162 REIRKHKEKM 171 (189)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHhhhhc
Confidence 8886655443
No 2
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=98.62 E-value=1.5e-07 Score=73.60 Aligned_cols=83 Identities=17% Similarity=0.245 Sum_probs=56.4
Q ss_pred CCCCEEEeeecCCCCCchh---hHHHhhcHHHHHHHHhhc---hhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKY---AIEWMQDFEVFQEALEAD---SSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEE 77 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~---~~ewm~D~e~f~eal~~e---~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGide 77 (150)
.++|+++|+||+|+.+... ..+|+++++.+.+.+..+ ..|.. + ++...+.++....+++++||++|+|+++
T Consensus 170 ~~~p~~iv~NK~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~-~--~l~~~~~~~~~~~~~~~~SA~~~~gi~~ 246 (262)
T 1yrb_A 170 LGATTIPALNKVDLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMA-Y--KMCSMMTEVLPPVRVLYLSAKTREGFED 246 (262)
T ss_dssp HTSCEEEEECCGGGCCHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHH-H--HHHHHHHHHSCCCCCEECCTTTCTTHHH
T ss_pred cCCCeEEEEecccccccccHHHHHHHHhChHHHHHHHhccccccchhH-h--HHHHHHHHhcCcccceEEEecCcccHHH
Confidence 4689999999999876542 245666666555544211 12222 1 3333445665556899999999999999
Q ss_pred HHHHHHHHHHHH
Q psy7275 78 LLQLIKLAGEDY 89 (150)
Q Consensus 78 L~~~I~e~~~ey 89 (150)
|++.|.+...+.
T Consensus 247 l~~~i~~~~~~~ 258 (262)
T 1yrb_A 247 LETLAYEHYCTC 258 (262)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHhccc
Confidence 999998877543
No 3
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=98.60 E-value=8e-08 Score=70.64 Aligned_cols=62 Identities=26% Similarity=0.414 Sum_probs=42.6
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK 83 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~ 83 (150)
.+.|+|+|+||+|+.+.+......+.. .+.+ ..+...+++.+||++|+|++++++.|.
T Consensus 132 ~~~p~i~v~nK~Dl~~~~~~~~~~~~~---~~~~-------------------~~~~~~~~~~~Sa~~~~gv~~l~~~l~ 189 (195)
T 3pqc_A 132 LNIPFTIVLTKMDKVKMSERAKKLEEH---RKVF-------------------SKYGEYTIIPTSSVTGEGISELLDLIS 189 (195)
T ss_dssp TTCCEEEEEECGGGSCGGGHHHHHHHH---HHHH-------------------HSSCCSCEEECCTTTCTTHHHHHHHHH
T ss_pred cCCCEEEEEEChhcCChHHHHHHHHHH---HHHH-------------------hhcCCCceEEEecCCCCCHHHHHHHHH
Confidence 368999999999998655432221111 1110 112346999999999999999999998
Q ss_pred HHHH
Q psy7275 84 LAGE 87 (150)
Q Consensus 84 e~~~ 87 (150)
+.+.
T Consensus 190 ~~l~ 193 (195)
T 3pqc_A 190 TLLK 193 (195)
T ss_dssp HHHC
T ss_pred HHhh
Confidence 7663
No 4
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=98.59 E-value=1e-07 Score=71.00 Aligned_cols=60 Identities=8% Similarity=0.120 Sum_probs=41.2
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK 83 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~ 83 (150)
.++|+|+|+||+|+.+.... ..+...... ..+ +++++.+||++|.|+++++..|.
T Consensus 118 ~~~piilv~nK~Dl~~~~~~-----~~~~~~~~~------------------~~~--~~~~~~~Sa~~g~gi~~l~~~l~ 172 (206)
T 2bov_A 118 ENVPFLLVGNKSDLEDKRQV-----SVEEAKNRA------------------EQW--NVNYVETSAKTRANVDKVFFDLM 172 (206)
T ss_dssp SCCCEEEEEECTTCGGGCCS-----CHHHHHHHH------------------HHH--TCEEEEECTTTCTTHHHHHHHHH
T ss_pred CCCCEEEEEeccCccccccc-----cHHHHHHHH------------------HHh--CCeEEEEeCCCCCCHHHHHHHHH
Confidence 47899999999998653221 011111110 111 46899999999999999999998
Q ss_pred HHHHH
Q psy7275 84 LAGED 88 (150)
Q Consensus 84 e~~~e 88 (150)
+.+.+
T Consensus 173 ~~i~~ 177 (206)
T 2bov_A 173 REIRA 177 (206)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87754
No 5
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=98.52 E-value=4.2e-07 Score=75.95 Aligned_cols=64 Identities=22% Similarity=0.198 Sum_probs=42.5
Q ss_pred CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhh-----cCCcEEEeecCCCCCHHHHH
Q psy7275 5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFY-----STLKVVGFSSVSGEGTEELL 79 (150)
Q Consensus 5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy-----~~l~vv~VSA~TGeGideL~ 79 (150)
++|.|+|+||+|+.+.........++ ... +..+. ...++++|||++|+|+++|+
T Consensus 217 ~~p~ivVlNK~Dl~~~~~~~~~~~~l---~~~------------------l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~ 275 (355)
T 3p32_A 217 ELADIVVVNKADGEHHKEARLAAREL---SAA------------------IRLIYPREALWRPPVLTMSAVEGRGLAELW 275 (355)
T ss_dssp GGCSEEEEECCCGGGHHHHHHHHHHH---HHH------------------HHHHSTTCCSCCCCEEEEBGGGTBSHHHHH
T ss_pred hcCCEEEEECCCCcChhHHHHHHHHH---HHH------------------HhhccccccCCCCceEEEEcCCCCCHHHHH
Confidence 35999999999986543322211111 111 11111 13689999999999999999
Q ss_pred HHHHHHHHHH
Q psy7275 80 QLIKLAGEDY 89 (150)
Q Consensus 80 ~~I~e~~~ey 89 (150)
+.|.+.+.+.
T Consensus 276 ~~i~~~~~~~ 285 (355)
T 3p32_A 276 DTVERHRQVL 285 (355)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999988653
No 6
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=98.52 E-value=1.7e-08 Score=82.93 Aligned_cols=97 Identities=12% Similarity=0.128 Sum_probs=59.2
Q ss_pred CCCCCEEEeeecCCCC-CchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHH
Q psy7275 3 DTGFPYTELVVGIDIV-NHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQL 81 (150)
Q Consensus 3 k~~lP~IlV~NKiDl~-~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~ 81 (150)
+.++|+|+|+||+|+. +.....+++. .+. ..+....++++|||++|.|+++|++.
T Consensus 120 ~~~~pvilV~NK~Dl~~~~~~~~~~~~-------~l~-----------------~~~~~~~~i~~vSA~~g~gv~~L~~~ 175 (308)
T 3iev_A 120 PLNKPVIVVINKIDKIGPAKNVLPLID-------EIH-----------------KKHPELTEIVPISALKGANLDELVKT 175 (308)
T ss_dssp GGCCCEEEEEECGGGSSSGGGGHHHHH-------HHH-----------------HHCTTCCCEEECBTTTTBSHHHHHHH
T ss_pred hcCCCEEEEEECccCCCCHHHHHHHHH-------HHH-----------------HhccCCCeEEEEeCCCCCCHHHHHHH
Confidence 3578999999999997 4443333221 111 11113468999999999999999999
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHhhCCCCC
Q psy7275 82 IKLAGEDYEKNYRVEWIRLRDEKAKSEQLEKREQHFALPTPQ 123 (150)
Q Consensus 82 I~e~~~ey~~~y~pe~e~~~~~~~~~~~~~~~~~~~~l~~~~ 123 (150)
|.+.+.+....|.++.-.-+.++....+.-+++-+..+...+
T Consensus 176 l~~~l~~~~~~~~~~~~td~~~~~~~~e~irek~~~~~~~ei 217 (308)
T 3iev_A 176 ILKYLPEGEPLFPEDMITDLPLRLLAAEIVREKAMMLTREEV 217 (308)
T ss_dssp HHHHSCBCCCSSCTTCCBCCCHHHHHHHHHHHHHHHTCCTTH
T ss_pred HHHhCccCCCCCCcccccCCCHHHHHHHHHHHHHHhhhhhhc
Confidence 999887655555432211112222223333445566666554
No 7
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=98.47 E-value=2.6e-07 Score=70.09 Aligned_cols=63 Identities=25% Similarity=0.326 Sum_probs=44.0
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHh-----hcCCcEEEeecCCCCCHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEF-----YSTLKVVGFSSVSGEGTEEL 78 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~ef-----y~~l~vv~VSA~TGeGideL 78 (150)
.++|+|+|+||+|+.+.....++.... .+. +..+ ....+++++||++|.|++++
T Consensus 143 ~~~p~i~v~nK~Dl~~~~~~~~~~~~~---~~~------------------l~~~~~~~~~~~~~~~~~SA~~g~gv~~l 201 (223)
T 4dhe_A 143 TGKPIHSLLTKCDKLTRQESINALRAT---QKS------------------LDAYRDAGYAGKLTVQLFSALKRTGLDDA 201 (223)
T ss_dssp GCCCEEEEEECGGGSCHHHHHHHHHHH---HHH------------------HHHHHHHTCCSCEEEEEEBTTTTBSHHHH
T ss_pred cCCCEEEEEeccccCChhhHHHHHHHH---HHH------------------HHhhhhcccCCCCeEEEeecCCCcCHHHH
Confidence 568999999999998755432222111 111 1122 24568999999999999999
Q ss_pred HHHHHHHHH
Q psy7275 79 LQLIKLAGE 87 (150)
Q Consensus 79 ~~~I~e~~~ 87 (150)
++.|.+.+.
T Consensus 202 ~~~l~~~~~ 210 (223)
T 4dhe_A 202 HALIESWLR 210 (223)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHhcC
Confidence 999987763
No 8
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=98.47 E-value=3.6e-07 Score=66.01 Aligned_cols=59 Identities=14% Similarity=0.002 Sum_probs=39.8
Q ss_pred CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHH
Q psy7275 5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKL 84 (150)
Q Consensus 5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e 84 (150)
++|+|+|+||+|+.+..... .+.... + ...+ +.+++.+||++|.|+++++..|.+
T Consensus 111 ~~piilv~NK~Dl~~~~~v~-----~~~~~~-----------~-------~~~~--~~~~~~~Sa~~g~gi~~l~~~l~~ 165 (175)
T 2nzj_A 111 HVPIILVGNKADLARCREVS-----VEEGRA-----------C-------AVVF--DCKFIETSATLQHNVAELFEGVVR 165 (175)
T ss_dssp -CCEEEEEECTTCTTTCCSC-----HHHHHH-----------H-------HHHH--TSEEEECBTTTTBSHHHHHHHHHH
T ss_pred CCCEEEEEEChhhccccccC-----HHHHHH-----------H-------HHHc--CCeEEEEecCCCCCHHHHHHHHHH
Confidence 68999999999997543210 000000 0 0011 468999999999999999999987
Q ss_pred HHHH
Q psy7275 85 AGED 88 (150)
Q Consensus 85 ~~~e 88 (150)
.+.+
T Consensus 166 ~~~~ 169 (175)
T 2nzj_A 166 QLRL 169 (175)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7643
No 9
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=98.46 E-value=3.9e-07 Score=65.45 Aligned_cols=60 Identities=12% Similarity=-0.021 Sum_probs=41.0
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK 83 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~ 83 (150)
.++|+|+|+||+|+.+..... .+.. ..+ .. ..+.+++.+||++|+|++++++.|.
T Consensus 105 ~~~p~ilv~nK~Dl~~~~~~~-----~~~~-~~~------------------~~-~~~~~~~~~Sa~~~~gi~~l~~~l~ 159 (166)
T 3q72_A 105 DDVPIILVGNKSDLVRSREVS-----VDEG-RAC------------------AV-VFDCKFIETSAALHHNVQALFEGVV 159 (166)
T ss_dssp -CCCEEEEEECTTCCSSCCSC-----HHHH-HHH------------------HH-HTTCEEEECBGGGTBSHHHHHHHHH
T ss_pred CCCCEEEEEeccccccccccC-----HHHH-HHH------------------HH-HhCCcEEEeccCCCCCHHHHHHHHH
Confidence 468999999999997643221 0000 000 01 1246899999999999999999998
Q ss_pred HHHHH
Q psy7275 84 LAGED 88 (150)
Q Consensus 84 e~~~e 88 (150)
+.+.+
T Consensus 160 ~~~~~ 164 (166)
T 3q72_A 160 RQIRL 164 (166)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 87654
No 10
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=98.46 E-value=5e-07 Score=66.70 Aligned_cols=62 Identities=11% Similarity=0.151 Sum_probs=42.9
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK 83 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~ 83 (150)
.++|+|+|+||+|+.+.....+ ...+.. .++ +++++.+||++|.|+++++..|.
T Consensus 125 ~~~p~ilv~nK~Dl~~~~~~~~------~~~~~~------------------~~~--~~~~~~~Sa~~~~gi~~l~~~l~ 178 (190)
T 3con_A 125 DDVPMVLVGNKCDLPTRTVDTK------QAHELA------------------KSY--GIPFIETSAKTRQGVEDAFYTLV 178 (190)
T ss_dssp SCCCEEEEEECTTCSCCCSCHH------HHHHHH------------------HHH--TCCEEECCTTTCTTHHHHHHHHH
T ss_pred CCCeEEEEEECCcCCcccCCHH------HHHHHH------------------HHc--CCeEEEEeCCCCCCHHHHHHHHH
Confidence 3689999999999876322111 111111 111 46899999999999999999999
Q ss_pred HHHHHHHh
Q psy7275 84 LAGEDYEK 91 (150)
Q Consensus 84 e~~~ey~~ 91 (150)
+.+.++..
T Consensus 179 ~~~~~~~~ 186 (190)
T 3con_A 179 REIRQYRM 186 (190)
T ss_dssp HHHHHHC-
T ss_pred HHHHHHHH
Confidence 88766543
No 11
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=98.44 E-value=4e-07 Score=65.91 Aligned_cols=61 Identities=11% Similarity=-0.086 Sum_probs=41.3
Q ss_pred CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHH
Q psy7275 5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKL 84 (150)
Q Consensus 5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e 84 (150)
++|+|+|+||+|+.+..... .+...... .. .+.+++.+||++|.|++++++.|.+
T Consensus 113 ~~p~ilv~nK~Dl~~~~~~~-----~~~~~~~~------------------~~--~~~~~~~~Sa~~~~gi~~l~~~l~~ 167 (181)
T 3tw8_B 113 DVCRILVGNKNDDPERKVVE-----TEDAYKFA------------------GQ--MGIQLFETSAKENVNVEEMFNCITE 167 (181)
T ss_dssp TSEEEEEEECTTCGGGCCSC-----HHHHHHHH------------------HH--HTCCEEECBTTTTBSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchhcccC-----HHHHHHHH------------------HH--cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 57999999999986543210 00000000 01 1468999999999999999999988
Q ss_pred HHHHHH
Q psy7275 85 AGEDYE 90 (150)
Q Consensus 85 ~~~ey~ 90 (150)
.+.+..
T Consensus 168 ~~~~~~ 173 (181)
T 3tw8_B 168 LVLRAK 173 (181)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 775443
No 12
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=98.42 E-value=5.4e-07 Score=66.66 Aligned_cols=62 Identities=18% Similarity=0.275 Sum_probs=43.1
Q ss_pred CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHh--hcCCcEEEeecCCCCCHHHHHHHH
Q psy7275 5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEF--YSTLKVVGFSSVSGEGTEELLQLI 82 (150)
Q Consensus 5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~ef--y~~l~vv~VSA~TGeGideL~~~I 82 (150)
++|+|+|+||+|+.+.....++. +.+. +..+ ....+++.+||++|+|++++++.|
T Consensus 127 ~~piilv~NK~Dl~~~~~~~~~~-------~~~~----------------~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l 183 (199)
T 4bas_A 127 RVPFLFFANKMDAAGAKTAAELV-------EILD----------------LTTLMGDHPFVIFASNGLKGTGVHEGFSWL 183 (199)
T ss_dssp BCCEEEEEECTTSTTCCCHHHHH-------HHHT----------------HHHHHTTSCEEEEECBTTTTBTHHHHHHHH
T ss_pred CCCEEEEEECcCCCCCCCHHHHH-------HHhc----------------chhhccCCeeEEEEeeCCCccCHHHHHHHH
Confidence 78999999999997663322211 2111 0011 134689999999999999999999
Q ss_pred HHHHHHH
Q psy7275 83 KLAGEDY 89 (150)
Q Consensus 83 ~e~~~ey 89 (150)
.+.+.+.
T Consensus 184 ~~~~~~~ 190 (199)
T 4bas_A 184 QETASRQ 190 (199)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8877543
No 13
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.42 E-value=1.1e-07 Score=70.46 Aligned_cols=65 Identities=12% Similarity=0.050 Sum_probs=43.8
Q ss_pred CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHH
Q psy7275 5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKL 84 (150)
Q Consensus 5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e 84 (150)
++|+|+|+||+|+.+.....+. .... ...+ +++++.+||++|.|++++++.|.+
T Consensus 114 ~~piilv~nK~Dl~~~~~~~~~------~~~~------------------~~~~--~~~~~~~Sa~~~~gi~~l~~~l~~ 167 (199)
T 2gf0_A 114 DIPVMLVGNKCDETQREVDTRE------AQAV------------------AQEW--KCAFMETSAKMNYNVKELFQELLT 167 (199)
T ss_dssp GSCEEEEEECTTCSSCSSCHHH------HHHH------------------HHHH--TCEEEECBTTTTBSHHHHHHHHHH
T ss_pred CCCEEEEEECccCCccccCHHH------HHHH------------------HHHh--CCeEEEEecCCCCCHHHHHHHHHH
Confidence 6799999999999753321110 0000 0011 368999999999999999999988
Q ss_pred HHHHHHhhhHH
Q psy7275 85 AGEDYEKNYRV 95 (150)
Q Consensus 85 ~~~ey~~~y~p 95 (150)
.+.+......+
T Consensus 168 ~~~~~~~~~~~ 178 (199)
T 2gf0_A 168 LETRRNMSLNI 178 (199)
T ss_dssp HCSSSCEECC-
T ss_pred HHhhhhccccc
Confidence 77655444444
No 14
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=98.40 E-value=5.5e-07 Score=64.35 Aligned_cols=59 Identities=12% Similarity=0.023 Sum_probs=40.1
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK 83 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~ 83 (150)
.+.|+|+|+||+|+.+.... ..+...... .. +...+++.+||++|.|+++++..|.
T Consensus 107 ~~~piilv~nK~Dl~~~~~~-----~~~~~~~~~------------------~~-~~~~~~~~~Sa~~~~gi~~l~~~l~ 162 (167)
T 1c1y_A 107 EDVPMILVGNKCDLEDERVV-----GKEQGQNLA------------------RQ-WCNCAFLESSAKSKINVNEIFYDLV 162 (167)
T ss_dssp SCCCEEEEEECTTCGGGCCS-----CHHHHHHHH------------------HH-TTSCEEEECBTTTTBSHHHHHHHHH
T ss_pred CCCcEEEEEECccccccccC-----CHHHHHHHH------------------HH-ccCCcEEEecCCCCCCHHHHHHHHH
Confidence 47899999999998653221 011111100 11 2357899999999999999999998
Q ss_pred HHH
Q psy7275 84 LAG 86 (150)
Q Consensus 84 e~~ 86 (150)
+.+
T Consensus 163 ~~i 165 (167)
T 1c1y_A 163 RQI 165 (167)
T ss_dssp HHH
T ss_pred HHH
Confidence 765
No 15
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=98.38 E-value=1.1e-06 Score=62.14 Aligned_cols=57 Identities=11% Similarity=0.096 Sum_probs=40.1
Q ss_pred CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHH
Q psy7275 5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKL 84 (150)
Q Consensus 5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e 84 (150)
++|+++|+||+|+.+.....+. ..+.. .++ +++++.+||++|.|+++++..|.+
T Consensus 108 ~~p~iiv~nK~Dl~~~~~~~~~------~~~~~------------------~~~--~~~~~~~Sa~~~~gi~~l~~~l~~ 161 (166)
T 2ce2_X 108 DVPMVLVGNKSDLAARTVESRQ------AQDLA------------------RSY--GIPYIETSAKTRQGVEDAFYTLVR 161 (166)
T ss_dssp CCCEEEEEECTTCSCCCSCHHH------HHHHH------------------HHH--TCCEEEECTTTCTTHHHHHHHHHH
T ss_pred CCcEEEEEEchhhhhcccCHHH------HHHHH------------------HHc--CCeEEEecCCCCCCHHHHHHHHHH
Confidence 7899999999999764321110 01100 111 468999999999999999999987
Q ss_pred HHH
Q psy7275 85 AGE 87 (150)
Q Consensus 85 ~~~ 87 (150)
.+.
T Consensus 162 ~~~ 164 (166)
T 2ce2_X 162 EIR 164 (166)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 16
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=98.38 E-value=4.9e-07 Score=65.92 Aligned_cols=29 Identities=7% Similarity=-0.003 Sum_probs=24.9
Q ss_pred CCcEEEeecCCCCCHHHHHHHHHHHHHHH
Q psy7275 61 TLKVVGFSSVSGEGTEELLQLIKLAGEDY 89 (150)
Q Consensus 61 ~l~vv~VSA~TGeGideL~~~I~e~~~ey 89 (150)
..+++.+||++|.|+++++..|.+.+.+.
T Consensus 142 ~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~ 170 (178)
T 2iwr_A 142 RCSYYETXATYGLNVDRVFQEVAQKVVTL 170 (178)
T ss_dssp SEEEEEEBTTTTBTHHHHHHHHHHHHHHH
T ss_pred CCeEEEEeccccCCHHHHHHHHHHHHHHH
Confidence 46899999999999999999998776443
No 17
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=98.38 E-value=5.8e-07 Score=65.05 Aligned_cols=62 Identities=13% Similarity=0.081 Sum_probs=42.3
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK 83 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~ 83 (150)
.++|+|+|+||+|+.+..... .+.. ..+. . ..+.+++.+||++|.|++++++.|.
T Consensus 113 ~~~piilv~nK~Dl~~~~~v~-----~~~~-~~~~------------------~-~~~~~~~~~Sa~~~~gv~~l~~~l~ 167 (181)
T 2fn4_A 113 DDFPVVLVGNKADLESQRQVP-----RSEA-SAFG------------------A-SHHVAYFEASAKLRLNVDEAFEQLV 167 (181)
T ss_dssp SCCCEEEEEECGGGGGGCCSC-----HHHH-HHHH------------------H-HTTCEEEECBTTTTBSHHHHHHHHH
T ss_pred CCCCEEEEEECcccccccccC-----HHHH-HHHH------------------H-HcCCeEEEecCCCCCCHHHHHHHHH
Confidence 478999999999986532210 0000 0000 0 1256899999999999999999998
Q ss_pred HHHHHHH
Q psy7275 84 LAGEDYE 90 (150)
Q Consensus 84 e~~~ey~ 90 (150)
+.+.++.
T Consensus 168 ~~~~~~~ 174 (181)
T 2fn4_A 168 RAVRKYQ 174 (181)
T ss_dssp HHHHHHT
T ss_pred HHHHHhh
Confidence 8776543
No 18
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=98.37 E-value=7.3e-07 Score=64.87 Aligned_cols=60 Identities=8% Similarity=0.082 Sum_probs=40.9
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK 83 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~ 83 (150)
.++|+|+|+||+|+.+.... ..+...+.. .+ .+++++.+||++|.|+++++..|.
T Consensus 122 ~~~piilv~nK~Dl~~~~~~-----~~~~~~~~~------------------~~--~~~~~~~~Sa~~~~gi~~l~~~l~ 176 (187)
T 2a9k_A 122 ENVPFLLVGNKSDLEDKRQV-----SVEEAKNRA------------------EQ--WNVNYVETSAKTRANVDKVFFDLM 176 (187)
T ss_dssp TTCCEEEEEECGGGGGGCCS-----CHHHHHHHH------------------HH--TTCEEEECCTTTCTTHHHHHHHHH
T ss_pred CCCCEEEEEECccccccCcc-----CHHHHHHHH------------------HH--cCCeEEEeCCCCCCCHHHHHHHHH
Confidence 37899999999998653221 011111111 11 146899999999999999999998
Q ss_pred HHHHH
Q psy7275 84 LAGED 88 (150)
Q Consensus 84 e~~~e 88 (150)
+.+.+
T Consensus 177 ~~i~~ 181 (187)
T 2a9k_A 177 REIRA 181 (187)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87643
No 19
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=98.37 E-value=8.8e-08 Score=70.55 Aligned_cols=73 Identities=19% Similarity=0.156 Sum_probs=42.1
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK 83 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~ 83 (150)
.+.|+|+|+||+|+....... .+.+.+.+ ++ +.+++.+||++|.|+++++..|.
T Consensus 111 ~~~piilv~nK~Dl~~~~~~~---~~~~~~~~---------------------~~--~~~~~~~Sa~~~~~v~~l~~~i~ 164 (188)
T 2wjg_A 111 MGANLLLALNKMDLAKSLGIE---IDVDKLEK---------------------IL--GVKVVPLSAAKKMGIEELKKAIS 164 (188)
T ss_dssp TTCCEEEEEECHHHHHHTTCC---CCHHHHHH---------------------HH--TSCEEECBGGGTBSHHHHHHHHH
T ss_pred cCCCEEEEEEhhhccccccch---HHHHHHHH---------------------Hh--CCCeEEEEecCCCCHHHHHHHHH
Confidence 468999999999974322110 11111111 11 36899999999999999999999
Q ss_pred HHHHHHHh--hhHHHHHHHHH
Q psy7275 84 LAGEDYEK--NYRVEWIRLRD 102 (150)
Q Consensus 84 e~~~ey~~--~y~pe~e~~~~ 102 (150)
+.+.+... .|..++++..+
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~ 185 (188)
T 2wjg_A 165 IAVKDKKTAEIKYPNFEPYIK 185 (188)
T ss_dssp HHHTTC---------------
T ss_pred HHHHhccCccCCCHHHHHHHH
Confidence 98877664 56666665543
No 20
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=98.37 E-value=8.8e-07 Score=63.45 Aligned_cols=59 Identities=8% Similarity=0.049 Sum_probs=40.6
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK 83 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~ 83 (150)
.+.|+|+|+||+|+.......+.. ..+. .++ +++++.+||++|.|+++++..|.
T Consensus 107 ~~~piilv~nK~Dl~~~~~~~~~~---~~~~---------------------~~~--~~~~~~~Sa~~~~gv~~l~~~l~ 160 (170)
T 1g16_A 107 DEAQLLLVGNKSDMETRVVTADQG---EALA---------------------KEL--GIPFIESSAKNDDNVNEIFFTLA 160 (170)
T ss_dssp TTCEEEEEEECTTCTTCCSCHHHH---HHHH---------------------HHH--TCCEEECBTTTTBSHHHHHHHHH
T ss_pred CCCcEEEEEECccCCcCccCHHHH---HHHH---------------------HHc--CCeEEEEECCCCCCHHHHHHHHH
Confidence 478999999999994432211111 0010 111 46899999999999999999998
Q ss_pred HHHHH
Q psy7275 84 LAGED 88 (150)
Q Consensus 84 e~~~e 88 (150)
+.+.+
T Consensus 161 ~~~~~ 165 (170)
T 1g16_A 161 KLIQE 165 (170)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87754
No 21
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=98.37 E-value=1.1e-06 Score=64.53 Aligned_cols=58 Identities=16% Similarity=0.107 Sum_probs=41.1
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCC-cEEEeecCCCCCHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTL-KVVGFSSVSGEGTEELLQLI 82 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l-~vv~VSA~TGeGideL~~~I 82 (150)
.++|+|+|+||+|+.+.... +...+.+. + + +. +++.+||++|+|+++++..|
T Consensus 134 ~~~piilv~NK~Dl~~~~~~-------~~~~~~~~------------------~-~-~~~~~~~~Sa~~~~gv~~l~~~l 186 (198)
T 3t1o_A 134 DDVPIVIQVNKRDLPDALPV-------EMVRAVVD------------------P-E-GKFPVLEAVATEGKGVFETLKEV 186 (198)
T ss_dssp TSSCEEEEEECTTSTTCCCH-------HHHHHHHC------------------T-T-CCSCEEECBGGGTBTHHHHHHHH
T ss_pred CCCCEEEEEEchhcccccCH-------HHHHHHHH------------------h-c-CCceEEEEecCCCcCHHHHHHHH
Confidence 57899999999999754211 11111111 1 1 34 89999999999999999999
Q ss_pred HHHHHH
Q psy7275 83 KLAGED 88 (150)
Q Consensus 83 ~e~~~e 88 (150)
.+.+.+
T Consensus 187 ~~~i~~ 192 (198)
T 3t1o_A 187 SRLVLA 192 (198)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877644
No 22
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=98.36 E-value=8.6e-07 Score=63.78 Aligned_cols=58 Identities=14% Similarity=0.035 Sum_probs=39.6
Q ss_pred CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHH
Q psy7275 5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKL 84 (150)
Q Consensus 5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e 84 (150)
++|+|+|+||+|+.+.... ..+..... ... .+.+++.+||++|.|+++++..+.+
T Consensus 109 ~~p~ilv~nK~Dl~~~~~~-----~~~~~~~~------------------~~~--~~~~~~~~Sa~~~~~v~~l~~~l~~ 163 (169)
T 3q85_A 109 DLPVILVGNKSDLARSREV-----SLEEGRHL------------------AGT--LSCKHIETSAALHHNTRELFEGAVR 163 (169)
T ss_dssp CCCEEEEEECTTCGGGCCS-----CHHHHHHH------------------HHH--TTCEEEECBTTTTBSHHHHHHHHHH
T ss_pred CCCEEEEeeCcchhhcccC-----CHHHHHHH------------------HHH--cCCcEEEecCccCCCHHHHHHHHHH
Confidence 7899999999998643221 01100100 001 1468999999999999999999987
Q ss_pred HHH
Q psy7275 85 AGE 87 (150)
Q Consensus 85 ~~~ 87 (150)
.+.
T Consensus 164 ~i~ 166 (169)
T 3q85_A 164 QIR 166 (169)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 23
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=98.36 E-value=1.2e-06 Score=64.60 Aligned_cols=61 Identities=8% Similarity=0.002 Sum_probs=41.9
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK 83 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~ 83 (150)
.++|+|+|+||+|+.+..... .+...... . ..+++++.+||++|.|+++++..|.
T Consensus 120 ~~~p~ilv~nK~Dl~~~~~~~-----~~~~~~~~-------------------~-~~~~~~~~~Sa~~g~gv~~l~~~l~ 174 (196)
T 3tkl_A 120 ENVNKLLVGNKCDLTTKKVVD-----YTTAKEFA-------------------D-SLGIPFLETSAKNATNVEQSFMTMA 174 (196)
T ss_dssp TTCEEEEEEECTTCTTTCCSC-----HHHHHHHH-------------------H-HTTCCEEEECTTTCTTHHHHHHHHH
T ss_pred CCCCEEEEEECcccccccccC-----HHHHHHHH-------------------H-HcCCcEEEEeCCCCCCHHHHHHHHH
Confidence 368999999999997654320 00000000 1 1246899999999999999999998
Q ss_pred HHHHHH
Q psy7275 84 LAGEDY 89 (150)
Q Consensus 84 e~~~ey 89 (150)
+.+.+.
T Consensus 175 ~~i~~~ 180 (196)
T 3tkl_A 175 AEIKKR 180 (196)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777543
No 24
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=98.35 E-value=5.9e-07 Score=65.80 Aligned_cols=62 Identities=15% Similarity=0.014 Sum_probs=41.7
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK 83 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~ 83 (150)
.++|+|+|+||+|+.+.... ..+...... .. .+++++.+||++|+|+++++..|.
T Consensus 114 ~~~piilv~nK~Dl~~~~~~-----~~~~~~~~~------------------~~--~~~~~~~~Sa~~~~gi~~l~~~l~ 168 (186)
T 2bme_A 114 QNIVIILCGNKKDLDADREV-----TFLEASRFA------------------QE--NELMFLETSALTGENVEEAFVQCA 168 (186)
T ss_dssp TTCEEEEEEECGGGGGGCCS-----CHHHHHHHH------------------HH--TTCEEEECCTTTCTTHHHHHHHHH
T ss_pred CCCcEEEEEECccccccccc-----CHHHHHHHH------------------HH--cCCEEEEecCCCCCCHHHHHHHHH
Confidence 57899999999998543221 011011100 01 246899999999999999999998
Q ss_pred HHHHHHH
Q psy7275 84 LAGEDYE 90 (150)
Q Consensus 84 e~~~ey~ 90 (150)
+.+.+..
T Consensus 169 ~~~~~~~ 175 (186)
T 2bme_A 169 RKILNKI 175 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 8775433
No 25
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=98.35 E-value=1.8e-07 Score=75.05 Aligned_cols=74 Identities=23% Similarity=0.109 Sum_probs=48.6
Q ss_pred CCCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHH
Q psy7275 3 DTGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLI 82 (150)
Q Consensus 3 k~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I 82 (150)
..++|+|+|+||+|+....... .+.+.+.. .+ +++++++||++|.|+++|++.|
T Consensus 108 ~~~~pvilv~NK~Dl~~~~~i~---~~~~~l~~---------------------~l--g~~vi~~SA~~g~gi~el~~~i 161 (258)
T 3a1s_A 108 EMEKKVILAMTAIDEAKKTGMK---IDRYELQK---------------------HL--GIPVVFTSSVTGEGLEELKEKI 161 (258)
T ss_dssp TTTCCEEEEEECHHHHHHTTCC---BCHHHHHH---------------------HH--CSCEEECCTTTCTTHHHHHHHH
T ss_pred hcCCCEEEEEECcCCCCccchH---HHHHHHHH---------------------Hc--CCCEEEEEeeCCcCHHHHHHHH
Confidence 3578999999999984322210 11111111 11 4799999999999999999999
Q ss_pred HHHHHHH------HhhhHHHHHHHHH
Q psy7275 83 KLAGEDY------EKNYRVEWIRLRD 102 (150)
Q Consensus 83 ~e~~~ey------~~~y~pe~e~~~~ 102 (150)
.+....- ...|.+++++...
T Consensus 162 ~~~~~~~~~~~~~~~~y~~~~~~~i~ 187 (258)
T 3a1s_A 162 VEYAQKNTILHRMILDYGEKVESEIK 187 (258)
T ss_dssp HHHHHSSSCSCCCCCCCCHHHHHHHH
T ss_pred HHHhhccccCCCcccCCchhHHHHHH
Confidence 8876521 1157666665443
No 26
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=98.35 E-value=5.9e-07 Score=63.93 Aligned_cols=59 Identities=10% Similarity=0.097 Sum_probs=39.9
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK 83 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~ 83 (150)
.++|+|+|+||+|+.+.... ..+...... .. .+.+++.+||++|.|++++++.|.
T Consensus 108 ~~~piilv~nK~Dl~~~~~~-----~~~~~~~~~------------------~~--~~~~~~~~Sa~~~~gi~~l~~~l~ 162 (168)
T 1u8z_A 108 ENVPFLLVGNKSDLEDKRQV-----SVEEAKNRA------------------DQ--WNVNYVETSAKTRANVDKVFFDLM 162 (168)
T ss_dssp TTSCEEEEEECGGGGGGCCS-----CHHHHHHHH------------------HH--HTCEEEECCTTTCTTHHHHHHHHH
T ss_pred CCCcEEEEEECccccccCcc-----CHHHHHHHH------------------HH--cCCeEEEeCCCCCCCHHHHHHHHH
Confidence 36899999999998643221 011111110 11 146899999999999999999998
Q ss_pred HHHH
Q psy7275 84 LAGE 87 (150)
Q Consensus 84 e~~~ 87 (150)
+.+.
T Consensus 163 ~~i~ 166 (168)
T 1u8z_A 163 REIR 166 (168)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7653
No 27
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=98.35 E-value=3.9e-07 Score=65.49 Aligned_cols=60 Identities=13% Similarity=0.032 Sum_probs=40.5
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK 83 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~ 83 (150)
.++|+|+|+||+|+.+.... ..+...+.. .. .+.+++.+||++|.|++++++.|.
T Consensus 110 ~~~piilv~nK~Dl~~~~~~-----~~~~~~~~~------------------~~--~~~~~~~~Sa~~~~gi~~l~~~l~ 164 (170)
T 1z08_A 110 NEICLCIVGNKIDLEKERHV-----SIQEAESYA------------------ES--VGAKHYHTSAKQNKGIEELFLDLC 164 (170)
T ss_dssp GGSEEEEEEECGGGGGGCCS-----CHHHHHHHH------------------HH--TTCEEEEEBTTTTBSHHHHHHHHH
T ss_pred CCCeEEEEEECccccccccc-----CHHHHHHHH------------------HH--cCCeEEEecCCCCCCHHHHHHHHH
Confidence 36799999999998653221 011111100 01 146899999999999999999998
Q ss_pred HHHHH
Q psy7275 84 LAGED 88 (150)
Q Consensus 84 e~~~e 88 (150)
+.+.+
T Consensus 165 ~~~~~ 169 (170)
T 1z08_A 165 KRMIE 169 (170)
T ss_dssp HHHHC
T ss_pred HHHhh
Confidence 77644
No 28
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=98.34 E-value=1e-06 Score=64.53 Aligned_cols=59 Identities=10% Similarity=0.008 Sum_probs=35.3
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK 83 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~ 83 (150)
.++|+|+|+||+|+.+.... ..+...+.. ..+ +++++.+||++|.|+++++..|.
T Consensus 112 ~~~piilv~nK~Dl~~~~~v-----~~~~~~~~~------------------~~~--~~~~~~~Sa~~~~~i~~l~~~l~ 166 (183)
T 2fu5_C 112 ADVEKMILGNKCDVNDKRQV-----SKERGEKLA------------------LDY--GIKFMETSAKANINVENAFFTLA 166 (183)
T ss_dssp TTCEEEEEEEC--CCSCCCS-----CHHHHHHHH------------------HHH--TCEEEECCC---CCHHHHHHHHH
T ss_pred CCCCEEEEEECccCCccCcC-----CHHHHHHHH------------------HHc--CCeEEEEeCCCCCCHHHHHHHHH
Confidence 46899999999999754221 001111100 011 46899999999999999999998
Q ss_pred HHHH
Q psy7275 84 LAGE 87 (150)
Q Consensus 84 e~~~ 87 (150)
+.+.
T Consensus 167 ~~i~ 170 (183)
T 2fu5_C 167 RDIK 170 (183)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7664
No 29
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=98.34 E-value=1.4e-06 Score=67.13 Aligned_cols=67 Identities=16% Similarity=0.053 Sum_probs=42.2
Q ss_pred CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHH
Q psy7275 5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKL 84 (150)
Q Consensus 5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e 84 (150)
++|+|+|+||+|+.+........ .+.+. . .........+++.+||++|+|++++++.|.+
T Consensus 142 ~~piilv~nK~Dl~~~~~~~~~~------~~~~~-----------~---~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~ 201 (228)
T 2qu8_A 142 NKSIVIGFNKIDKCNMDSLSIDN------KLLIK-----------Q---ILDNVKNPIKFSSFSTLTGVGVEQAKITACE 201 (228)
T ss_dssp CCCEEEEEECGGGCC--CCCHHH------HHHHH-----------H---HHHHCCSCEEEEECCTTTCTTHHHHHHHHHH
T ss_pred CCcEEEEEeCcccCCchhhHHHH------HHHHH-----------H---HHHhcCCCceEEEEecccCCCHHHHHHHHHH
Confidence 78999999999997643321100 00000 0 0011111268999999999999999999988
Q ss_pred HHHHHHh
Q psy7275 85 AGEDYEK 91 (150)
Q Consensus 85 ~~~ey~~ 91 (150)
.+.+...
T Consensus 202 ~i~~~~~ 208 (228)
T 2qu8_A 202 LLKNDQA 208 (228)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7755443
No 30
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=98.34 E-value=1.2e-06 Score=63.91 Aligned_cols=60 Identities=8% Similarity=-0.016 Sum_probs=40.8
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK 83 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~ 83 (150)
.++|+|+|+||+|+.+.... ..+...+.. .. .+++++.+||++|.|+++++..|.
T Consensus 126 ~~~piilv~nK~Dl~~~~~~-----~~~~~~~~~------------------~~--~~~~~~~~Sa~~~~~v~~l~~~l~ 180 (195)
T 3bc1_A 126 ENPDIVLCGNKSDLEDQRAV-----KEEEARELA------------------EK--YGIPYFETSAANGTNISHAIEMLL 180 (195)
T ss_dssp SSCCEEEEEECTTCGGGCCS-----CHHHHHHHH------------------HH--HTCCEEECCTTTCTTHHHHHHHHH
T ss_pred CCCCEEEEEECccccccccc-----CHHHHHHHH------------------HH--cCCCEEEEECCCCCCHHHHHHHHH
Confidence 57899999999998643221 001111100 01 146899999999999999999998
Q ss_pred HHHHH
Q psy7275 84 LAGED 88 (150)
Q Consensus 84 e~~~e 88 (150)
+.+.+
T Consensus 181 ~~~~~ 185 (195)
T 3bc1_A 181 DLIMK 185 (195)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87643
No 31
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=98.33 E-value=3.8e-07 Score=64.86 Aligned_cols=59 Identities=15% Similarity=0.066 Sum_probs=39.9
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK 83 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~ 83 (150)
.+.|+|+|+||+|+.+..... .+.... + ..++ +.+++.+||++|.|++++++.|.
T Consensus 107 ~~~piilv~nK~Dl~~~~~~~-----~~~~~~-----------~-------~~~~--~~~~~~~Sa~~~~gi~~l~~~l~ 161 (167)
T 1kao_A 107 EKVPVILVGNKVDLESEREVS-----SSEGRA-----------L-------AEEW--GCPFMETSAKSKTMVDELFAEIV 161 (167)
T ss_dssp SCCCEEEEEECGGGGGGCCSC-----HHHHHH-----------H-------HHHH--TSCEEEECTTCHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCcccccccCC-----HHHHHH-----------H-------HHHh--CCCEEEecCCCCcCHHHHHHHHH
Confidence 478999999999986432210 000000 0 0111 46899999999999999999998
Q ss_pred HHHH
Q psy7275 84 LAGE 87 (150)
Q Consensus 84 e~~~ 87 (150)
+.+.
T Consensus 162 ~~~~ 165 (167)
T 1kao_A 162 RQMN 165 (167)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7664
No 32
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=98.33 E-value=8.1e-07 Score=65.68 Aligned_cols=61 Identities=20% Similarity=0.189 Sum_probs=41.6
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK 83 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~ 83 (150)
.+.|+|+|+||+|+.+...... ..+.+.+.+. .....+++.+||++|.|++++++.|.
T Consensus 133 ~~~p~i~v~nK~Dl~~~~~~~~---~~~~~~~~~~-------------------~~~~~~~~~~Sa~~~~gv~~l~~~l~ 190 (195)
T 1svi_A 133 YGIPVIVIATKADKIPKGKWDK---HAKVVRQTLN-------------------IDPEDELILFSSETKKGKDEAWGAIK 190 (195)
T ss_dssp TTCCEEEEEECGGGSCGGGHHH---HHHHHHHHHT-------------------CCTTSEEEECCTTTCTTHHHHHHHHH
T ss_pred cCCCEEEEEECcccCChHHHHH---HHHHHHHHHc-------------------ccCCCceEEEEccCCCCHHHHHHHHH
Confidence 4689999999999987543211 1111111111 11246899999999999999999987
Q ss_pred HHH
Q psy7275 84 LAG 86 (150)
Q Consensus 84 e~~ 86 (150)
+.+
T Consensus 191 ~~l 193 (195)
T 1svi_A 191 KMI 193 (195)
T ss_dssp HHH
T ss_pred HHh
Confidence 754
No 33
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=98.32 E-value=9.3e-07 Score=65.03 Aligned_cols=64 Identities=8% Similarity=-0.074 Sum_probs=43.3
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK 83 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~ 83 (150)
.++|+|+|+||+|+.......+. ..... .+ .+.+++.+||++|.|+++++..|.
T Consensus 120 ~~~p~ilv~nK~Dl~~~~~~~~~------~~~~~------------------~~--~~~~~~~~Sa~~~~gi~~l~~~l~ 173 (195)
T 1x3s_A 120 NDIVNMLVGNKIDKENREVDRNE------GLKFA------------------RK--HSMLFIEASAKTCDGVQCAFEELV 173 (195)
T ss_dssp SCCEEEEEEECTTSSSCCSCHHH------HHHHH------------------HH--TTCEEEECCTTTCTTHHHHHHHHH
T ss_pred CCCcEEEEEECCcCcccccCHHH------HHHHH------------------HH--cCCEEEEecCCCCCCHHHHHHHHH
Confidence 46899999999999543221110 00100 01 246899999999999999999998
Q ss_pred HHHHHHHhhh
Q psy7275 84 LAGEDYEKNY 93 (150)
Q Consensus 84 e~~~ey~~~y 93 (150)
+.+.+....|
T Consensus 174 ~~~~~~~~~~ 183 (195)
T 1x3s_A 174 EKIIQTPGLW 183 (195)
T ss_dssp HHHHTSGGGT
T ss_pred HHHHhhhhhh
Confidence 8776544444
No 34
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=98.31 E-value=9.2e-07 Score=65.54 Aligned_cols=60 Identities=7% Similarity=-0.027 Sum_probs=40.6
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK 83 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~ 83 (150)
.+.|+|+|+||+|+.+..... .+...+. ...+ +++++.+||++|.|++++++.|.
T Consensus 126 ~~~piilv~nK~Dl~~~~~~~-----~~~~~~~------------------~~~~--~~~~~~~Sa~~g~gi~~l~~~l~ 180 (189)
T 2gf9_A 126 DNAQVILVGNKCDLEDERVVP-----AEDGRRL------------------ADDL--GFEFFEASAKENINVKQVFERLV 180 (189)
T ss_dssp TTCEEEEEEECTTCGGGCCSC-----HHHHHHH------------------HHHH--TCEEEECBTTTTBSHHHHHHHHH
T ss_pred CCCCEEEEEECcccccccCCC-----HHHHHHH------------------HHHc--CCeEEEEECCCCCCHHHHHHHHH
Confidence 368999999999986432210 0000110 0111 46899999999999999999998
Q ss_pred HHHHH
Q psy7275 84 LAGED 88 (150)
Q Consensus 84 e~~~e 88 (150)
+.+.+
T Consensus 181 ~~i~~ 185 (189)
T 2gf9_A 181 DVICE 185 (189)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87644
No 35
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=98.31 E-value=1.7e-06 Score=62.62 Aligned_cols=61 Identities=16% Similarity=0.123 Sum_probs=41.0
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK 83 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~ 83 (150)
.++|+|+|+||+|+.+..... ..+...+. ..-....+++.+||++|.|+++++..|.
T Consensus 117 ~~~p~ilv~nK~Dl~~~~~~v----~~~~~~~~-------------------~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 173 (182)
T 1ky3_A 117 ETFPFVILGNKIDAEESKKIV----SEKSAQEL-------------------AKSLGDIPLFLTSAKNAINVDTAFEEIA 173 (182)
T ss_dssp TTCCEEEEEECTTSCGGGCCS----CHHHHHHH-------------------HHHTTSCCEEEEBTTTTBSHHHHHHHHH
T ss_pred CCCcEEEEEECCccccccccC----CHHHHHHH-------------------HHhcCCCeEEEEecCCCCCHHHHHHHHH
Confidence 578999999999986432110 00101110 0112357899999999999999999998
Q ss_pred HHHH
Q psy7275 84 LAGE 87 (150)
Q Consensus 84 e~~~ 87 (150)
+.+.
T Consensus 174 ~~~~ 177 (182)
T 1ky3_A 174 RSAL 177 (182)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7664
No 36
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=98.31 E-value=2e-06 Score=62.93 Aligned_cols=59 Identities=8% Similarity=0.116 Sum_probs=40.6
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecC-CCCCHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSV-SGEGTEELLQLI 82 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~-TGeGideL~~~I 82 (150)
.++|+|+|+||+|+.+..... .+..... ...+ +.+++.+||+ +|+|+++++..|
T Consensus 122 ~~~p~ilv~nK~Dl~~~~~v~-----~~~~~~~------------------~~~~--~~~~~~~Sa~~~~~~v~~l~~~l 176 (183)
T 3kkq_A 122 ESFPMILVANKVDLMHLRKVT-----RDQGKEM------------------ATKY--NIPYIETSAKDPPLNVDKTFHDL 176 (183)
T ss_dssp SCCCEEEEEECTTCSTTCCSC-----HHHHHHH------------------HHHH--TCCEEEEBCSSSCBSHHHHHHHH
T ss_pred CCCcEEEEEECCCchhccCcC-----HHHHHHH------------------HHHh--CCeEEEeccCCCCCCHHHHHHHH
Confidence 578999999999987532210 0100110 0111 3789999999 999999999999
Q ss_pred HHHHH
Q psy7275 83 KLAGE 87 (150)
Q Consensus 83 ~e~~~ 87 (150)
.+.+.
T Consensus 177 ~~~i~ 181 (183)
T 3kkq_A 177 VRVIR 181 (183)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 87654
No 37
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=98.31 E-value=1.2e-06 Score=63.32 Aligned_cols=58 Identities=14% Similarity=0.080 Sum_probs=39.4
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK 83 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~ 83 (150)
.++|+|+|+||+|+.+.... ..+...+.. .+ .+++++.+||++|.|+++++..|.
T Consensus 119 ~~~piilv~nK~Dl~~~~~~-----~~~~~~~~~------------------~~--~~~~~~~~Sa~~~~gi~~l~~~l~ 173 (179)
T 1z0f_A 119 PNTVIILIGNKADLEAQRDV-----TYEEAKQFA------------------EE--NGLLFLEASAKTGENVEDAFLEAA 173 (179)
T ss_dssp TTCEEEEEEECTTCGGGCCS-----CHHHHHHHH------------------HH--TTCEEEECCTTTCTTHHHHHHHHH
T ss_pred CCCcEEEEEECccccccccc-----CHHHHHHHH------------------HH--cCCEEEEEeCCCCCCHHHHHHHHH
Confidence 57899999999998543221 011111111 11 146899999999999999999987
Q ss_pred HHH
Q psy7275 84 LAG 86 (150)
Q Consensus 84 e~~ 86 (150)
+.+
T Consensus 174 ~~i 176 (179)
T 1z0f_A 174 KKI 176 (179)
T ss_dssp HHH
T ss_pred HHH
Confidence 655
No 38
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.30 E-value=1.3e-06 Score=63.52 Aligned_cols=60 Identities=13% Similarity=0.015 Sum_probs=41.0
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK 83 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~ 83 (150)
.+.|+|+|+||+|+.+..... .+...... .. .+++++.+||++|.|+++++..|.
T Consensus 115 ~~~piilv~nK~Dl~~~~~~~-----~~~~~~~~------------------~~--~~~~~~~~Sa~~~~gi~~l~~~l~ 169 (180)
T 2g6b_A 115 HDVALMLLGNKVDSAHERVVK-----REDGEKLA------------------KE--YGLPFMETSAKTGLNVDLAFTAIA 169 (180)
T ss_dssp TTCEEEEEEECCSTTSCCCSC-----HHHHHHHH------------------HH--HTCCEEECCTTTCTTHHHHHHHHH
T ss_pred CCCcEEEEEECcccCcccccC-----HHHHHHHH------------------HH--cCCeEEEEeCCCCCCHHHHHHHHH
Confidence 568999999999997643210 00000000 01 146899999999999999999998
Q ss_pred HHHHH
Q psy7275 84 LAGED 88 (150)
Q Consensus 84 e~~~e 88 (150)
+.+.+
T Consensus 170 ~~~~~ 174 (180)
T 2g6b_A 170 KELKR 174 (180)
T ss_dssp HHHHC
T ss_pred HHHHH
Confidence 76643
No 39
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=98.28 E-value=2e-06 Score=64.16 Aligned_cols=59 Identities=20% Similarity=0.140 Sum_probs=41.1
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK 83 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~ 83 (150)
.++|+|+|+||+|+.+.....+ ...... ......+++.+||++|.|+++++..|.
T Consensus 116 ~~~piilv~nK~Dl~~~~~~~~------~~~~~~-------------------~~~~~~~~~~~Sa~~g~gi~~l~~~l~ 170 (207)
T 1vg8_A 116 ENFPFVVLGNKIDLENRQVATK------RAQAWC-------------------YSKNNIPYFETSAKEAINVEQAFQTIA 170 (207)
T ss_dssp GGSCEEEEEECTTSSCCCSCHH------HHHHHH-------------------HHTTSCCEEECBTTTTBSHHHHHHHHH
T ss_pred CCCcEEEEEECCCCcccccCHH------HHHHHH-------------------HhcCCceEEEEeCCCCCCHHHHHHHHH
Confidence 4689999999999974332111 001100 102357899999999999999999998
Q ss_pred HHHH
Q psy7275 84 LAGE 87 (150)
Q Consensus 84 e~~~ 87 (150)
+.+.
T Consensus 171 ~~~~ 174 (207)
T 1vg8_A 171 RNAL 174 (207)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7764
No 40
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=98.28 E-value=7e-07 Score=65.29 Aligned_cols=62 Identities=11% Similarity=0.106 Sum_probs=40.7
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK 83 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~ 83 (150)
.++|+|+|+||+|+.+.... ..+...+.. .. .+.+++.+||++|.|+++++..|.
T Consensus 110 ~~~p~ilv~nK~Dl~~~~~~-----~~~~~~~~~------------------~~--~~~~~~~~Sa~~~~~v~~l~~~l~ 164 (181)
T 3t5g_A 110 VQIPIMLVGNKKDLHMERVI-----SYEEGKALA------------------ES--WNAAFLESSAKENQTAVDVFRRII 164 (181)
T ss_dssp --CCEEEEEECTTCTTTCCS-----CHHHHHHHH------------------HH--TTCEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCCEEEEEECccchhccee-----cHHHHHHHH------------------HH--hCCcEEEEecCCCCCHHHHHHHHH
Confidence 46899999999998654321 011111110 11 146899999999999999999998
Q ss_pred HHHHHHH
Q psy7275 84 LAGEDYE 90 (150)
Q Consensus 84 e~~~ey~ 90 (150)
+.+.+..
T Consensus 165 ~~~~~~~ 171 (181)
T 3t5g_A 165 LEAEKMD 171 (181)
T ss_dssp HHHHTC-
T ss_pred HHHHHhc
Confidence 8775443
No 41
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.28 E-value=1.7e-06 Score=64.79 Aligned_cols=58 Identities=9% Similarity=0.035 Sum_probs=39.6
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK 83 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~ 83 (150)
.++|+|+|+||+|+.......+.. ..+. ..+ +++++.+||++|.|+++++..|.
T Consensus 124 ~~~piilv~nK~Dl~~~~~~~~~~---~~~~---------------------~~~--~~~~~~~Sa~~~~gi~~l~~~l~ 177 (213)
T 3cph_A 124 DEAQLLLVGNKSDMETRVVTADQG---EALA---------------------KEL--GIPFIESSAKNDDNVNEIFFTLA 177 (213)
T ss_dssp TCSEEEEEEECTTCSSCCSCHHHH---HHHH---------------------HHH--TCCEEECBTTTTBSSHHHHHHHH
T ss_pred CCCCEEEEEECCCCcccccCHHHH---HHHH---------------------HHc--CCEEEEEeCCCCCCHHHHHHHHH
Confidence 368999999999994332211111 1110 111 36899999999999999999988
Q ss_pred HHHH
Q psy7275 84 LAGE 87 (150)
Q Consensus 84 e~~~ 87 (150)
+.+.
T Consensus 178 ~~~~ 181 (213)
T 3cph_A 178 KLIQ 181 (213)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7664
No 42
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=98.28 E-value=9.1e-07 Score=65.81 Aligned_cols=61 Identities=10% Similarity=-0.110 Sum_probs=39.5
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCc-EEEeecCCCCCHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLK-VVGFSSVSGEGTEELLQLI 82 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~-vv~VSA~TGeGideL~~~I 82 (150)
.++|+|+|+||+|+.+...... ..+...+.. ..+ +.. ++.+||++|+|++++++.|
T Consensus 126 ~~~p~ilv~nK~Dl~~~~~~~~---~~~~~~~~~-------------------~~~-~~~~~~~~Sa~~~~gi~~l~~~l 182 (194)
T 3reg_A 126 DTAKTVLVGLKVDLRKDGSDDV---TKQEGDDLC-------------------QKL-GCVAYIEASSVAKIGLNEVFEKS 182 (194)
T ss_dssp TTSEEEEEEECGGGCCTTTTCC---CHHHHHHHH-------------------HHH-TCSCEEECBTTTTBSHHHHHHHH
T ss_pred CCCCEEEEEEChhhccCCCCcc---cHHHHHHHH-------------------Hhc-CCCEEEEeecCCCCCHHHHHHHH
Confidence 3689999999999875321100 011111100 111 234 9999999999999999999
Q ss_pred HHHHH
Q psy7275 83 KLAGE 87 (150)
Q Consensus 83 ~e~~~ 87 (150)
.+.+.
T Consensus 183 ~~~i~ 187 (194)
T 3reg_A 183 VDCIF 187 (194)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87764
No 43
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=98.28 E-value=1.6e-07 Score=68.27 Aligned_cols=67 Identities=18% Similarity=0.195 Sum_probs=42.7
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK 83 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~ 83 (150)
.++|+|+|+||+|+.+.+. +.....+..... + ..++....+++.+||++|.|++++++.|.
T Consensus 106 ~~~p~ilv~nK~Dl~~~~~--------~~~~~~~~~~~~----~-------~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~ 166 (178)
T 2lkc_A 106 ANVPIIVAINKMDKPEANP--------DRVMQELMEYNL----V-------PEEWGGDTIFCKLSAKTKEGLDHLLEMIL 166 (178)
T ss_dssp GSCCEEEEEETTTSSCSCH--------HHHHHHHTTTTC----C-------BTTTTSSEEEEECCSSSSHHHHHHHHHHH
T ss_pred CCCCEEEEEECccCCcCCH--------HHHHHHHHhcCc----C-------hhHcCCcccEEEEecCCCCCHHHHHHHHH
Confidence 4789999999999976421 111122210000 0 00111125899999999999999999998
Q ss_pred HHHHHH
Q psy7275 84 LAGEDY 89 (150)
Q Consensus 84 e~~~ey 89 (150)
+.+...
T Consensus 167 ~~~~~~ 172 (178)
T 2lkc_A 167 LVSEME 172 (178)
T ss_dssp HHHHHT
T ss_pred Hhhhhh
Confidence 877654
No 44
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=98.27 E-value=1.2e-06 Score=63.72 Aligned_cols=70 Identities=14% Similarity=0.154 Sum_probs=41.1
Q ss_pred CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHH
Q psy7275 5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKL 84 (150)
Q Consensus 5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e 84 (150)
+.|+|+|+||+|+.+.....+++.+ .......+ .-... +..-+...+++.+||++|.|+++++..|.+
T Consensus 109 ~~piilv~nK~Dl~~~~~~~~~~~~------~~~~~v~~--~~~~~----~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~ 176 (186)
T 1mh1_A 109 NTPIILVGTKLDLRDDKDTIEKLKE------KKLTPITY--PQGLA----MAKEIGAVKYLECSALTQRGLKTVFDEAIR 176 (186)
T ss_dssp TSCEEEEEECHHHHTCHHHHHHHHH------TTCCCCCH--HHHHH----HHHHTTCSEEEECCTTTCTTHHHHHHHHHH
T ss_pred CCCEEEEeEcccccccchhhhhhcc------cccccCCH--HHHHH----HHHhcCCcEEEEecCCCccCHHHHHHHHHH
Confidence 7899999999998765432222110 00000000 00000 111122248999999999999999999987
Q ss_pred HH
Q psy7275 85 AG 86 (150)
Q Consensus 85 ~~ 86 (150)
.+
T Consensus 177 ~~ 178 (186)
T 1mh1_A 177 AV 178 (186)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 45
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=98.27 E-value=1.9e-06 Score=62.39 Aligned_cols=59 Identities=15% Similarity=0.044 Sum_probs=40.7
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK 83 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~ 83 (150)
.++|+|+|+||+|+.......+ ...+.. .-....+++.+||++|.|++++++.|.
T Consensus 115 ~~~p~i~v~nK~Dl~~~~~~~~------~~~~~~-------------------~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 169 (177)
T 1wms_A 115 ESFPFVILGNKIDISERQVSTE------EAQAWC-------------------RDNGDYPYFETSAKDATNVAAAFEEAV 169 (177)
T ss_dssp TTSCEEEEEECTTCSSCSSCHH------HHHHHH-------------------HHTTCCCEEECCTTTCTTHHHHHHHHH
T ss_pred CCCcEEEEEECCcccccccCHH------HHHHHH-------------------HhcCCceEEEEeCCCCCCHHHHHHHHH
Confidence 5689999999999874322111 111110 102357899999999999999999998
Q ss_pred HHHH
Q psy7275 84 LAGE 87 (150)
Q Consensus 84 e~~~ 87 (150)
+.+.
T Consensus 170 ~~~~ 173 (177)
T 1wms_A 170 RRVL 173 (177)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7664
No 46
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.27 E-value=5e-06 Score=69.11 Aligned_cols=64 Identities=16% Similarity=0.074 Sum_probs=42.4
Q ss_pred CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhc-----CCcEEEeecCCCCCHHHHH
Q psy7275 5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYS-----TLKVVGFSSVSGEGTEELL 79 (150)
Q Consensus 5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~-----~l~vv~VSA~TGeGideL~ 79 (150)
++|.|+|+||+|+.+......++.++ .+.+. .+.. ..++++|||++|+|+++|+
T Consensus 194 ~~p~ivv~NK~Dl~~~~~~~~~~~~l---~~~l~------------------~~~~~~~~~~~~vi~iSA~~g~gi~~L~ 252 (341)
T 2p67_A 194 EVADLIVINKDDGDNHTNVAIARHMY---ESALH------------------ILRRKYDEWQPRVLTCSALEKRGIDEIW 252 (341)
T ss_dssp HHCSEEEECCCCTTCHHHHHHHHHHH---HHHHH------------------HSCCSBTTBCCEEEECBGGGTBSHHHHH
T ss_pred cccCEEEEECCCCCChHHHHHHHHHH---HHHHH------------------hccccccCCCCcEEEeeCCCCCCHHHHH
Confidence 46899999999997643222222111 11111 1110 3478999999999999999
Q ss_pred HHHHHHHHHH
Q psy7275 80 QLIKLAGEDY 89 (150)
Q Consensus 80 ~~I~e~~~ey 89 (150)
+.|.+.+..|
T Consensus 253 ~~l~~~~~~~ 262 (341)
T 2p67_A 253 HAIIDFKTAL 262 (341)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999987655
No 47
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=98.27 E-value=1.6e-06 Score=62.27 Aligned_cols=62 Identities=13% Similarity=0.105 Sum_probs=41.4
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK 83 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~ 83 (150)
.+.|+|+|+||+|+.+.....+ +...+... . +. ....+++.+||++|.|++++++.|.
T Consensus 107 ~~~piilv~nK~Dl~~~~~~~~-------~~~~~~~~------~-------~~--~~~~~~~~~Sa~~~~gi~~l~~~l~ 164 (171)
T 1upt_A 107 RKAILVVFANKQDMEQAMTSSE-------MANSLGLP------A-------LK--DRKWQIFKTSATKGTGLDEAMEWLV 164 (171)
T ss_dssp TTCEEEEEEECTTSTTCCCHHH-------HHHHHTGG------G-------CT--TSCEEEEECCTTTCTTHHHHHHHHH
T ss_pred CCCEEEEEEECCCCcCCCCHHH-------HHHHhCch------h-------cc--CCceEEEECcCCCCcCHHHHHHHHH
Confidence 4789999999999976532211 11211100 0 00 1235899999999999999999998
Q ss_pred HHHH
Q psy7275 84 LAGE 87 (150)
Q Consensus 84 e~~~ 87 (150)
+.+.
T Consensus 165 ~~i~ 168 (171)
T 1upt_A 165 ETLK 168 (171)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7664
No 48
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=98.26 E-value=2e-06 Score=63.81 Aligned_cols=61 Identities=11% Similarity=0.042 Sum_probs=31.7
Q ss_pred CCCCEEEeeecCCCCC-chhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCC-CCCHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVN-HKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVS-GEGTEELLQL 81 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~-~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~T-GeGideL~~~ 81 (150)
.++|+|+|+||+|+.+ .... ..+...+.. .++ +.+++.+||++ |.|+++++..
T Consensus 131 ~~~piilv~nK~Dl~~~~~~v-----~~~~~~~~~------------------~~~--~~~~~~~Sa~~~~~gi~~l~~~ 185 (208)
T 2yc2_C 131 RPLRAVLVANKTDLPPQRHQV-----RLDMAQDWA------------------TTN--TLDFFDVSANPPGKDADAPFLS 185 (208)
T ss_dssp SCCEEEEEEECC-------CC-----CHHHHHHHH------------------HHT--TCEEEECCC-------CHHHHH
T ss_pred cCCcEEEEEECcccchhhccC-----CHHHHHHHH------------------HHc--CCEEEEeccCCCCcCHHHHHHH
Confidence 4789999999999975 2221 001111110 111 36899999999 9999999999
Q ss_pred HHHHHHHH
Q psy7275 82 IKLAGEDY 89 (150)
Q Consensus 82 I~e~~~ey 89 (150)
|.+.+.+.
T Consensus 186 i~~~~~~~ 193 (208)
T 2yc2_C 186 IATTFYRN 193 (208)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 98876543
No 49
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=98.26 E-value=2e-06 Score=63.00 Aligned_cols=64 Identities=20% Similarity=0.208 Sum_probs=40.8
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK 83 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~ 83 (150)
.++|+|+|+||+|+.+... + ..+.+...+.. ....+ ..+++.+||++|.|++++++.|.
T Consensus 121 ~~~piilv~nK~Dl~~~~~--~---~~~~~~~~~~~--------------~~~~~--~~~~~~~Sa~~~~~v~~l~~~l~ 179 (190)
T 2cxx_A 121 LDIPTIVAVNKLDKIKNVQ--E---VINFLAEKFEV--------------PLSEI--DKVFIPISAKFGDNIERLKNRIF 179 (190)
T ss_dssp TTCCEEEEEECGGGCSCHH--H---HHHHHHHHHTC--------------CGGGH--HHHEEECCTTTCTTHHHHHHHHH
T ss_pred cCCceEEEeehHhccCcHH--H---HHHHHHHHhhh--------------hhhcc--CCcEEEEecCCCCCHHHHHHHHH
Confidence 4689999999999976541 1 11111111110 00000 13689999999999999999998
Q ss_pred HHHHH
Q psy7275 84 LAGED 88 (150)
Q Consensus 84 e~~~e 88 (150)
+.+.+
T Consensus 180 ~~~~~ 184 (190)
T 2cxx_A 180 EVIRE 184 (190)
T ss_dssp HHHHH
T ss_pred Hhcch
Confidence 77644
No 50
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=98.26 E-value=2.3e-06 Score=64.15 Aligned_cols=59 Identities=10% Similarity=0.103 Sum_probs=40.6
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK 83 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~ 83 (150)
.++|+|+|+||+|+.+..... .+...... .. .+++++.+||++|.|+++++..|.
T Consensus 112 ~~~piilv~nK~Dl~~~~~~~-----~~~~~~~~------------------~~--~~~~~~~~Sa~~g~gi~~l~~~l~ 166 (206)
T 2bcg_Y 112 STVLKLLVGNKCDLKDKRVVE-----YDVAKEFA------------------DA--NKMPFLETSALDSTNVEDAFLTMA 166 (206)
T ss_dssp TTCEEEEEEECTTCTTTCCSC-----HHHHHHHH------------------HH--TTCCEEECCTTTCTTHHHHHHHHH
T ss_pred CCCCEEEEEECCCCccccccC-----HHHHHHHH------------------HH--cCCeEEEEeCCCCCCHHHHHHHHH
Confidence 468999999999997643210 01000000 01 246899999999999999999998
Q ss_pred HHHH
Q psy7275 84 LAGE 87 (150)
Q Consensus 84 e~~~ 87 (150)
+.+.
T Consensus 167 ~~i~ 170 (206)
T 2bcg_Y 167 RQIK 170 (206)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7764
No 51
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=98.26 E-value=1e-06 Score=65.35 Aligned_cols=62 Identities=13% Similarity=0.181 Sum_probs=41.1
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhh-cCCcEEEeecCCCCCHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFY-STLKVVGFSSVSGEGTEELLQLI 82 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy-~~l~vv~VSA~TGeGideL~~~I 82 (150)
.+.|+|+|+||+|+.+.... +.+.+.+. +..+. ...+++.+||++|.|++++++.|
T Consensus 125 ~~~piilv~nK~Dl~~~~~~-------~~~~~~~~----------------~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 181 (190)
T 2h57_A 125 RRIPILFFANKMDLRDAVTS-------VKVSQLLC----------------LENIKDKPWHICASDAIKGEGLQEGVDWL 181 (190)
T ss_dssp SCCCEEEEEECTTSTTCCCH-------HHHHHHHT----------------GGGCCSSCEEEEECBTTTTBTHHHHHHHH
T ss_pred CCCeEEEEEeCcCcccCCCH-------HHHHHHhC----------------hhhccCCceEEEEccCCCCcCHHHHHHHH
Confidence 57899999999999754221 11112211 00111 24589999999999999999999
Q ss_pred HHHHHH
Q psy7275 83 KLAGED 88 (150)
Q Consensus 83 ~e~~~e 88 (150)
.+.+.+
T Consensus 182 ~~~i~~ 187 (190)
T 2h57_A 182 QDQIQT 187 (190)
T ss_dssp HHHC--
T ss_pred HHHHHH
Confidence 876643
No 52
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=98.26 E-value=1.9e-06 Score=62.58 Aligned_cols=58 Identities=14% Similarity=0.023 Sum_probs=39.6
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK 83 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~ 83 (150)
.++|+|+|+||+|+.+..... .+...+.. .+ .+++++.+||++|.|+++++..|.
T Consensus 116 ~~~p~i~v~nK~Dl~~~~~~~-----~~~~~~~~------------------~~--~~~~~~~~Sa~~g~gi~~l~~~l~ 170 (181)
T 2efe_B 116 PNMVMALAGNKSDLLDARKVT-----AEDAQTYA------------------QE--NGLFFMETSAKTATNVKEIFYEIA 170 (181)
T ss_dssp TTCEEEEEEECTTCTTTCCSC-----HHHHHHHH------------------HH--TTCEEEECCSSSCTTHHHHHHHHH
T ss_pred CCCcEEEEEECCcccccccCC-----HHHHHHHH------------------HH--cCCEEEEEECCCCCCHHHHHHHHH
Confidence 368999999999996543210 01111110 01 246899999999999999999987
Q ss_pred HHH
Q psy7275 84 LAG 86 (150)
Q Consensus 84 e~~ 86 (150)
+.+
T Consensus 171 ~~~ 173 (181)
T 2efe_B 171 RRL 173 (181)
T ss_dssp HTC
T ss_pred HHH
Confidence 755
No 53
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.26 E-value=1.4e-06 Score=64.84 Aligned_cols=60 Identities=10% Similarity=-0.070 Sum_probs=40.6
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK 83 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~ 83 (150)
.++|+|+|+||+|+.+.... ..+...... .. .+++++.+||++|.|++++++.|.
T Consensus 127 ~~~piilv~nK~Dl~~~~~~-----~~~~~~~~~------------------~~--~~~~~~~~Sa~~~~gi~~l~~~l~ 181 (191)
T 3dz8_A 127 DNAQVILVGNKCDMEEERVV-----PTEKGQLLA------------------EQ--LGFDFFEASAKENISVRQAFERLV 181 (191)
T ss_dssp TTCEEEEEEECTTCGGGCCS-----CHHHHHHHH------------------HH--HTCEEEECBTTTTBSHHHHHHHHH
T ss_pred CCCCEEEEEECCCCcccccc-----CHHHHHHHH------------------HH--cCCeEEEEECCCCCCHHHHHHHHH
Confidence 47899999999998543221 000000000 01 146899999999999999999998
Q ss_pred HHHHH
Q psy7275 84 LAGED 88 (150)
Q Consensus 84 e~~~e 88 (150)
+.+.+
T Consensus 182 ~~i~~ 186 (191)
T 3dz8_A 182 DAICD 186 (191)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87644
No 54
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=98.26 E-value=3.8e-06 Score=62.27 Aligned_cols=70 Identities=14% Similarity=0.191 Sum_probs=40.6
Q ss_pred CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHH
Q psy7275 5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKL 84 (150)
Q Consensus 5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e 84 (150)
++|+|+|+||+|+.+.....+.+.+... ..+. ..-...+ ..+ +...+++.+||++|+|+++++..|.+
T Consensus 122 ~~piilv~nK~Dl~~~~~~~~~~~~~~~--~~v~--~~~~~~~-------~~~-~~~~~~~~~Sa~~g~gi~~l~~~l~~ 189 (194)
T 2atx_A 122 NVPFLLIGTQIDLRDDPKTLARLNDMKE--KPIC--VEQGQKL-------AKE-IGACCYVECSALTQKGLKTVFDEAII 189 (194)
T ss_dssp TCCEEEEEECTTSTTCHHHHHHHTTTTC--CCCC--HHHHHHH-------HHH-HTCSCEEECCTTTCTTHHHHHHHHHH
T ss_pred CCCEEEEEEChhhcccccchhhcccccC--cccC--HHHHHHH-------HHH-cCCcEEEEeeCCCCCCHHHHHHHHHH
Confidence 7899999999999765432221110000 0000 0000001 111 12238999999999999999999876
Q ss_pred HH
Q psy7275 85 AG 86 (150)
Q Consensus 85 ~~ 86 (150)
.+
T Consensus 190 ~i 191 (194)
T 2atx_A 190 AI 191 (194)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 55
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=98.26 E-value=2e-06 Score=64.25 Aligned_cols=60 Identities=8% Similarity=-0.018 Sum_probs=40.9
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK 83 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~ 83 (150)
.+.|+|+|+||+|+.+..... .+.... + ...+ +++++.+||++|.|+++++..|.
T Consensus 112 ~~~piilv~nK~Dl~~~~~~~-----~~~~~~-----------~-------~~~~--~~~~~~~Sa~~~~gi~~l~~~l~ 166 (203)
T 1zbd_A 112 DNAQVLLVGNKCDMEDERVVS-----SERGRQ-----------L-------ADHL--GFEFFEASAKDNINVKQTFERLV 166 (203)
T ss_dssp SSCEEEEEEECTTCTTSCCSC-----HHHHHH-----------H-------HHHH--TCEEEECBTTTTBSSHHHHHHHH
T ss_pred CCCCEEEEEECcccCcccccC-----HHHHHH-----------H-------HHHC--CCeEEEEECCCCCCHHHHHHHHH
Confidence 468999999999997543210 000000 0 0111 46899999999999999999998
Q ss_pred HHHHH
Q psy7275 84 LAGED 88 (150)
Q Consensus 84 e~~~e 88 (150)
+.+.+
T Consensus 167 ~~i~~ 171 (203)
T 1zbd_A 167 DVICE 171 (203)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87643
No 56
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=98.25 E-value=2.4e-06 Score=64.59 Aligned_cols=59 Identities=10% Similarity=0.025 Sum_probs=40.2
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK 83 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~ 83 (150)
.++|+|+|+||+|+.+.... ..+...+.. .. .+++++.+||++|.|++++++.|.
T Consensus 140 ~~~piilV~NK~Dl~~~~~v-----~~~~~~~~~------------------~~--~~~~~~~~Sa~~g~gi~~l~~~l~ 194 (217)
T 2f7s_A 140 ENPDIVLIGNKADLPDQREV-----NERQARELA------------------DK--YGIPYFETSAATGQNVEKAVETLL 194 (217)
T ss_dssp TCCEEEEEEECTTCGGGCCS-----CHHHHHHHH------------------HH--TTCCEEEEBTTTTBTHHHHHHHHH
T ss_pred CCCCEEEEEECCcccccccc-----CHHHHHHHH------------------HH--CCCcEEEEECCCCCCHHHHHHHHH
Confidence 57899999999998643221 001001100 01 146899999999999999999998
Q ss_pred HHHH
Q psy7275 84 LAGE 87 (150)
Q Consensus 84 e~~~ 87 (150)
+.+.
T Consensus 195 ~~i~ 198 (217)
T 2f7s_A 195 DLIM 198 (217)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7664
No 57
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=98.25 E-value=1.1e-06 Score=66.55 Aligned_cols=62 Identities=13% Similarity=0.034 Sum_probs=41.2
Q ss_pred CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHH
Q psy7275 5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKL 84 (150)
Q Consensus 5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e 84 (150)
++|+|+|+||+|+.+...... +...... . ..+.+++.|||++|.|+++++..|.+
T Consensus 117 ~~piilv~nK~Dl~~~~~~~~-----~~~~~~~-------------------~-~~~~~~~~~Sa~~g~gv~~l~~~l~~ 171 (218)
T 4djt_A 117 EAPIVVCANKIDIKNRQKISK-----KLVMEVL-------------------K-GKNYEYFEISAKTAHNFGLPFLHLAR 171 (218)
T ss_dssp SSCEEEEEECTTCC----CCH-----HHHHHHT-------------------T-TCCCEEEEEBTTTTBTTTHHHHHHHH
T ss_pred CCCEEEEEECCCCccccccCH-----HHHHHHH-------------------H-HcCCcEEEEecCCCCCHHHHHHHHHH
Confidence 589999999999875422100 0000000 0 12468999999999999999999998
Q ss_pred HHHHHHh
Q psy7275 85 AGEDYEK 91 (150)
Q Consensus 85 ~~~ey~~ 91 (150)
.+.++..
T Consensus 172 ~~~~~~~ 178 (218)
T 4djt_A 172 IFTGRPD 178 (218)
T ss_dssp HHHCCTT
T ss_pred HHhcccc
Confidence 8766543
No 58
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=98.25 E-value=1.2e-06 Score=65.53 Aligned_cols=28 Identities=11% Similarity=-0.016 Sum_probs=24.5
Q ss_pred CCcEEEeecCCCCCHHHHHHHHHHHHHH
Q psy7275 61 TLKVVGFSSVSGEGTEELLQLIKLAGED 88 (150)
Q Consensus 61 ~l~vv~VSA~TGeGideL~~~I~e~~~e 88 (150)
..+++.+||++|.|+++++..|.+.+.+
T Consensus 153 ~~~~~e~Sa~~~~gv~~lf~~l~~~i~~ 180 (184)
T 3ihw_A 153 RCTYYETCATYGLNVERVFQDVAQKVVA 180 (184)
T ss_dssp TCEEEEEBTTTTBTHHHHHHHHHHHHHH
T ss_pred CCeEEEecCCCCCCHHHHHHHHHHHHHH
Confidence 4789999999999999999999877644
No 59
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=98.24 E-value=2.1e-06 Score=63.59 Aligned_cols=59 Identities=8% Similarity=-0.056 Sum_probs=40.2
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK 83 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~ 83 (150)
.++|+|+|+||+|+.+.... ..+...... .. .+++++.+||++|.|+++++..|.
T Consensus 129 ~~~piilv~nK~Dl~~~~~~-----~~~~~~~~~------------------~~--~~~~~~~~Sa~~~~gi~~l~~~l~ 183 (193)
T 2oil_A 129 ATIVVMLVGNKSDLSQAREV-----PTEEARMFA------------------EN--NGLLFLETSALDSTNVELAFETVL 183 (193)
T ss_dssp TTCEEEEEEECGGGGGGCCS-----CHHHHHHHH------------------HH--TTCEEEEECTTTCTTHHHHHHHHH
T ss_pred CCCeEEEEEECCCccccccc-----CHHHHHHHH------------------HH--cCCEEEEEeCCCCCCHHHHHHHHH
Confidence 47899999999998653221 000000000 01 246899999999999999999998
Q ss_pred HHHH
Q psy7275 84 LAGE 87 (150)
Q Consensus 84 e~~~ 87 (150)
+.+.
T Consensus 184 ~~i~ 187 (193)
T 2oil_A 184 KEIF 187 (193)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7764
No 60
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=98.24 E-value=2.4e-06 Score=63.51 Aligned_cols=59 Identities=12% Similarity=-0.058 Sum_probs=39.8
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK 83 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~ 83 (150)
.++|+|+|+||+|+.+.... ..+..... . .+ .+++++.+||++|.|+++++..|.
T Consensus 125 ~~~piilv~nK~Dl~~~~~v-----~~~~~~~~-----------~-------~~--~~~~~~~~Sa~~~~gi~~l~~~l~ 179 (191)
T 2a5j_A 125 SNMVIMLIGNKSDLESRRDV-----KREEGEAF-----------A-------RE--HGLIFMETSAKTACNVEEAFINTA 179 (191)
T ss_dssp TTCEEEEEEECTTCGGGCCS-----CHHHHHHH-----------H-------HH--HTCEEEEECTTTCTTHHHHHHHHH
T ss_pred CCCCEEEEEECcccCCcccc-----CHHHHHHH-----------H-------HH--cCCEEEEEeCCCCCCHHHHHHHHH
Confidence 37899999999998643221 00000000 0 01 146899999999999999999998
Q ss_pred HHHH
Q psy7275 84 LAGE 87 (150)
Q Consensus 84 e~~~ 87 (150)
+.+.
T Consensus 180 ~~i~ 183 (191)
T 2a5j_A 180 KEIY 183 (191)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7664
No 61
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=98.24 E-value=7.4e-07 Score=66.97 Aligned_cols=64 Identities=11% Similarity=0.026 Sum_probs=41.6
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK 83 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~ 83 (150)
.++|+|+|+||+|+.+..... .+.... + ...+ +.+++.+||++|.|+++++..|.
T Consensus 128 ~~~piilv~nK~Dl~~~~~v~-----~~~~~~-----------~-------~~~~--~~~~~~~Sa~~~~~v~~l~~~l~ 182 (201)
T 3oes_A 128 TRVPVVLVGNKADLSPEREVQ-----AVEGKK-----------L-------AESW--GATFMESSARENQLTQGIFTKVI 182 (201)
T ss_dssp -CCCEEEEEECTTCGGGCCSC-----HHHHHH-----------H-------HHHH--TCEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCEEEEEECccCccccccC-----HHHHHH-----------H-------HHHh--CCeEEEEeCCCCCCHHHHHHHHH
Confidence 368999999999986433210 000000 0 0011 46899999999999999999998
Q ss_pred HHHHHHHhh
Q psy7275 84 LAGEDYEKN 92 (150)
Q Consensus 84 e~~~ey~~~ 92 (150)
+.+.+....
T Consensus 183 ~~i~~~~~~ 191 (201)
T 3oes_A 183 QEIARVENS 191 (201)
T ss_dssp HHHHHC---
T ss_pred HHHHhhhhh
Confidence 887665443
No 62
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=98.24 E-value=1e-06 Score=66.73 Aligned_cols=70 Identities=17% Similarity=0.203 Sum_probs=41.5
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK 83 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~ 83 (150)
.++|+|+|+||+|+.+.....++..+ ..... ....-...+...+...+++.|||++|+|++++++.|.
T Consensus 133 ~~~piilv~nK~Dl~~~~~~~~~~~~------~~~~~------v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~ 200 (204)
T 4gzl_A 133 PNTPIILVGTKLDLRDDKDTIEKLKE------KKLTP------ITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 200 (204)
T ss_dssp SSCCEEEEEECHHHHTCHHHHHHHHH------TTCCC------CCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHH
T ss_pred CCCCEEEEEechhhccchhhhhhhhc------ccccc------ccHHHHHHHHHhcCCcEEEEeeCCCCCCHHHHHHHHH
Confidence 37899999999999765543222110 00000 0000000111223345799999999999999999987
Q ss_pred HH
Q psy7275 84 LA 85 (150)
Q Consensus 84 e~ 85 (150)
+.
T Consensus 201 ~~ 202 (204)
T 4gzl_A 201 RA 202 (204)
T ss_dssp HT
T ss_pred HH
Confidence 64
No 63
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=98.23 E-value=1e-06 Score=69.06 Aligned_cols=59 Identities=14% Similarity=0.171 Sum_probs=39.4
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK 83 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~ 83 (150)
..+|+|||.||+|+.+.... ..+ ++.. +.. ++ ++.++.+||+||.|++++|..|.
T Consensus 117 ~~~piilVgNK~Dl~~~r~V-----~~~---e~~~--------~a~-------~~--~~~~~e~SAktg~nV~e~F~~i~ 171 (216)
T 4dkx_A 117 SDVIIMLVGNKTDLADKRQV-----SIE---EGER--------KAK-------EL--NVMFIETSAKAGYNVKQLFRRVA 171 (216)
T ss_dssp TSSEEEEEEECTTCGGGCCS-----CHH---HHHH--------HHH-------HH--TCEEEEEBTTTTBSHHHHHHHHH
T ss_pred CCCeEEEEeeccchHhcCcc-----cHH---HHhh--------HHH-------Hh--CCeeEEEeCCCCcCHHHHHHHHH
Confidence 46799999999998643221 011 1110 111 11 46899999999999999999988
Q ss_pred HHHH
Q psy7275 84 LAGE 87 (150)
Q Consensus 84 e~~~ 87 (150)
+.+.
T Consensus 172 ~~i~ 175 (216)
T 4dkx_A 172 AALP 175 (216)
T ss_dssp HHC-
T ss_pred HHHH
Confidence 7654
No 64
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=98.23 E-value=1.1e-06 Score=66.33 Aligned_cols=28 Identities=7% Similarity=-0.051 Sum_probs=24.6
Q ss_pred CcEEEeecCCCCCHHHHHHHHHHHHHHH
Q psy7275 62 LKVVGFSSVSGEGTEELLQLIKLAGEDY 89 (150)
Q Consensus 62 l~vv~VSA~TGeGideL~~~I~e~~~ey 89 (150)
.+++.+||++|+|+++++..|.+.+.+.
T Consensus 154 ~~~~~~Sa~~g~gi~~l~~~l~~~~~~~ 181 (212)
T 2j0v_A 154 AAYIECSSKTQQNVKAVFDTAIKVVLQP 181 (212)
T ss_dssp SEEEECCTTTCTTHHHHHHHHHHHHHCC
T ss_pred ceEEEccCCCCCCHHHHHHHHHHHHhhh
Confidence 4899999999999999999998877544
No 65
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.23 E-value=2.9e-06 Score=70.65 Aligned_cols=62 Identities=15% Similarity=0.277 Sum_probs=44.4
Q ss_pred CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHH
Q psy7275 5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKL 84 (150)
Q Consensus 5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e 84 (150)
+.|+|+|+||+|+.+.....+ ..+.+ .+ .+.+++.|||++|+|+++|++.|.+
T Consensus 280 ~~piilV~NK~Dl~~~~~~~~-------~~~~~------------------~~--~~~~~~~iSA~~g~gi~~l~~~i~~ 332 (357)
T 2e87_A 280 DLPFLVVINKIDVADEENIKR-------LEKFV------------------KE--KGLNPIKISALKGTGIDLVKEEIIK 332 (357)
T ss_dssp TSCEEEEECCTTTCCHHHHHH-------HHHHH------------------HH--TTCCCEECBTTTTBTHHHHHHHHHH
T ss_pred CCCEEEEEECcccCChHHHHH-------HHHHH------------------Hh--cCCCeEEEeCCCCcCHHHHHHHHHH
Confidence 689999999999976433211 11111 01 2468999999999999999999998
Q ss_pred HHHHHHhhh
Q psy7275 85 AGEDYEKNY 93 (150)
Q Consensus 85 ~~~ey~~~y 93 (150)
.+......+
T Consensus 333 ~l~~~~~~~ 341 (357)
T 2e87_A 333 TLRPLAEKV 341 (357)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhhh
Confidence 886655444
No 66
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=98.23 E-value=3.5e-06 Score=63.38 Aligned_cols=70 Identities=16% Similarity=0.177 Sum_probs=41.2
Q ss_pred CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHH
Q psy7275 5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKL 84 (150)
Q Consensus 5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e 84 (150)
++|+|+|+||+|+.+.....+++... ...... ..-... +..-+...+++.+||++|.|+++++..|.+
T Consensus 129 ~~piilv~nK~Dl~~~~~~~~~~~~~------~~~~v~--~~~~~~----~~~~~~~~~~~~~SA~~g~gi~~l~~~i~~ 196 (201)
T 2gco_A 129 NVPIILVGNKKDLRQDEHTRRELAKM------KQEPVR--SEEGRD----MANRISAFGYLECSAKTKEGVREVFEMATR 196 (201)
T ss_dssp TCCEEEEEECGGGTTCHHHHHHHHTT------TCCCCC--HHHHHH----HHHHTTCSEEEECCTTTCTTHHHHHHHHHH
T ss_pred CCCEEEEEecHHhhcCccchhhhccc------ccCcCC--HHHHHH----HHHhCCCcEEEEeeCCCCCCHHHHHHHHHH
Confidence 78999999999998764432222110 000000 000000 011122237899999999999999999987
Q ss_pred HH
Q psy7275 85 AG 86 (150)
Q Consensus 85 ~~ 86 (150)
.+
T Consensus 197 ~~ 198 (201)
T 2gco_A 197 AG 198 (201)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 67
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=98.22 E-value=1.4e-06 Score=62.23 Aligned_cols=58 Identities=17% Similarity=0.144 Sum_probs=38.8
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK 83 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~ 83 (150)
.++|+|+|+||+|+.+.... +.+...+.. .+ .+.+++.+||++|.|++++++.|.
T Consensus 110 ~~~~iilv~nK~Dl~~~~~~-----~~~~~~~~~------------------~~--~~~~~~~~Sa~~g~gi~~l~~~i~ 164 (170)
T 1r2q_A 110 PNIVIALSGNKADLANKRAV-----DFQEAQSYA------------------DD--NSLLFMETSAKTSMNVNEIFMAIA 164 (170)
T ss_dssp TTCEEEEEEECGGGGGGCCS-----CHHHHHHHH------------------HH--TTCEEEECCTTTCTTHHHHHHHHH
T ss_pred CCCcEEEEEECccCcccccc-----CHHHHHHHH------------------HH--cCCeEEEEeCCCCCCHHHHHHHHH
Confidence 46899999999998643221 111111100 01 246899999999999999999987
Q ss_pred HHH
Q psy7275 84 LAG 86 (150)
Q Consensus 84 e~~ 86 (150)
+.+
T Consensus 165 ~~~ 167 (170)
T 1r2q_A 165 KKL 167 (170)
T ss_dssp HTS
T ss_pred HHH
Confidence 643
No 68
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=98.22 E-value=2.2e-06 Score=64.51 Aligned_cols=60 Identities=15% Similarity=0.038 Sum_probs=40.5
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK 83 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~ 83 (150)
.++|+|+|+||+|+.+.... ..+...... .. .+++++.+||++|.|+++++..|.
T Consensus 129 ~~~piilv~nK~Dl~~~~~v-----~~~~~~~~~------------------~~--~~~~~~~~SA~~g~gi~~l~~~l~ 183 (200)
T 2o52_A 129 PNIVVILCGNKKDLDPEREV-----TFLEASRFA------------------QE--NELMFLETSALTGENVEEAFLKCA 183 (200)
T ss_dssp TTCEEEEEEECGGGGGGCCS-----CHHHHHHHH------------------HH--TTCEEEEECTTTCTTHHHHHHHHH
T ss_pred CCCcEEEEEECCCccccccc-----CHHHHHHHH------------------HH--cCCEEEEEeCCCCCCHHHHHHHHH
Confidence 46899999999998543221 001001100 01 246899999999999999999998
Q ss_pred HHHHH
Q psy7275 84 LAGED 88 (150)
Q Consensus 84 e~~~e 88 (150)
+.+.+
T Consensus 184 ~~i~~ 188 (200)
T 2o52_A 184 RTILN 188 (200)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77643
No 69
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=98.22 E-value=7.3e-07 Score=67.79 Aligned_cols=63 Identities=11% Similarity=0.126 Sum_probs=41.2
Q ss_pred CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHH
Q psy7275 5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKL 84 (150)
Q Consensus 5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e 84 (150)
+.|.++|+||+|+.+... .+++.+.+.+ .++....+++++||++|+|++++++.|.+
T Consensus 154 ~~~~iiv~NK~Dl~~~~~-----~~~~~~~~~~------------------~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~ 210 (221)
T 2wsm_A 154 RVADLIVINKVALAEAVG-----ADVEKMKADA------------------KLINPRAKIIEMDLKTGKGFEEWIDFLRG 210 (221)
T ss_dssp HTCSEEEEECGGGHHHHT-----CCHHHHHHHH------------------HHHCTTSEEEECBTTTTBTHHHHHHHHHH
T ss_pred hcCCEEEEecccCCcchh-----hHHHHHHHHH------------------HHhCCCCeEEEeecCCCCCHHHHHHHHHH
Confidence 469999999999853210 0122222221 12233578999999999999999999988
Q ss_pred HHHHHH
Q psy7275 85 AGEDYE 90 (150)
Q Consensus 85 ~~~ey~ 90 (150)
.+..|.
T Consensus 211 ~~~~~~ 216 (221)
T 2wsm_A 211 ILNVHS 216 (221)
T ss_dssp HHC---
T ss_pred HHHHHH
Confidence 765543
No 70
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=98.22 E-value=7.9e-08 Score=77.20 Aligned_cols=57 Identities=19% Similarity=0.191 Sum_probs=40.2
Q ss_pred CCCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHH
Q psy7275 3 DTGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLI 82 (150)
Q Consensus 3 k~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I 82 (150)
..++|+|+|+||+|+...... ..+.+.+.+. . +.+++++||++|.|+++|++.|
T Consensus 108 ~~~~pvilv~NK~Dl~~~~~~---~~~~~~l~~~----------------------l-g~~vi~~SA~~g~gi~el~~~i 161 (256)
T 3iby_A 108 ELGKPVVVALNMMDIAEHRGI---SIDTEKLESL----------------------L-GCSVIPIQAHKNIGIPALQQSL 161 (256)
T ss_dssp TSCSCEEEEEECHHHHHHTTC---EECHHHHHHH----------------------H-CSCEEECBGGGTBSHHHHHHHH
T ss_pred HcCCCEEEEEEChhcCCcCCc---HHHHHHHHHH----------------------c-CCCEEEEECCCCCCHHHHHHHH
Confidence 457899999999998533211 1122211111 1 4799999999999999999999
Q ss_pred HHH
Q psy7275 83 KLA 85 (150)
Q Consensus 83 ~e~ 85 (150)
.+.
T Consensus 162 ~~~ 164 (256)
T 3iby_A 162 LHC 164 (256)
T ss_dssp HTC
T ss_pred Hhh
Confidence 876
No 71
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=98.21 E-value=1.9e-06 Score=75.25 Aligned_cols=64 Identities=16% Similarity=0.138 Sum_probs=42.3
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHH-hhcCCcEEEeecCCCCCHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDE-FYSTLKVVGFSSVSGEGTEELLQLI 82 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~e-fy~~l~vv~VSA~TGeGideL~~~I 82 (150)
.++|+|+|+||+|+.+.+...+..++. .+.+. .. .+...+++++||++|+|+++|++.|
T Consensus 124 ~~ip~IvviNK~Dl~~~~~~~~~~~~l---~~~l~-----------------~~~~~~~~~ii~vSA~~g~gI~~L~~~L 183 (482)
T 1wb1_A 124 FNIPIIVVITKSDNAGTEEIKRTEMIM---KSILQ-----------------STHNLKNSSIIPISAKTGFGVDELKNLI 183 (482)
T ss_dssp TTCCBCEEEECTTSSCHHHHHHHHHHH---HHHHH-----------------HSSSGGGCCEEECCTTTCTTHHHHHHHH
T ss_pred cCCCEEEEEECCCcccchhHHHHHHHH---HHHHh-----------------hhcccccceEEEEECcCCCCHHHHHHHH
Confidence 578999999999998643221111111 11110 01 1335799999999999999999988
Q ss_pred HHHHH
Q psy7275 83 KLAGE 87 (150)
Q Consensus 83 ~e~~~ 87 (150)
.+.+.
T Consensus 184 ~~~i~ 188 (482)
T 1wb1_A 184 ITTLN 188 (482)
T ss_dssp HHHHH
T ss_pred HHhhc
Confidence 87654
No 72
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=98.21 E-value=4.3e-06 Score=61.07 Aligned_cols=27 Identities=11% Similarity=0.153 Sum_probs=24.1
Q ss_pred CCcEEEeecCCCCCHHHHHHHHHHHHH
Q psy7275 61 TLKVVGFSSVSGEGTEELLQLIKLAGE 87 (150)
Q Consensus 61 ~l~vv~VSA~TGeGideL~~~I~e~~~ 87 (150)
+++++.+||++|.|+++++..|.+.+.
T Consensus 177 ~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 203 (208)
T 3clv_A 177 NLLFIQTSAKTGTNIKNIFYMLAEEIY 203 (208)
T ss_dssp TCEEEEECTTTCTTHHHHHHHHHHHHH
T ss_pred CCcEEEEecCCCCCHHHHHHHHHHHHH
Confidence 469999999999999999999987664
No 73
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=98.21 E-value=2.3e-06 Score=65.21 Aligned_cols=73 Identities=8% Similarity=0.022 Sum_probs=42.7
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK 83 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~ 83 (150)
.++|+|+|+||+|+.+.....+.+.+.. ...+. ..-...+ ..-+...+++.+||++|.|+++++..|.
T Consensus 137 ~~~piilv~nK~Dl~~~~~~~~~~~~~~--~~~v~--~~~~~~~--------~~~~~~~~~~~~SA~~g~gi~el~~~l~ 204 (214)
T 2j1l_A 137 KKVPIIVVGCKTDLRKDKSLVNKLRRNG--LEPVT--YHRGQEM--------ARSVGAVAYLECSARLHDNVHAVFQEAA 204 (214)
T ss_dssp SSCCEEEEEECGGGGSCHHHHHHHHHTT--CCCCC--HHHHHHH--------HHHTTCSEEEECBTTTTBSHHHHHHHHH
T ss_pred CCCCEEEEEEChhhhccchhhhhhcccc--cCccc--HHHHHHH--------HHhcCCCEEEEecCCCCCCHHHHHHHHH
Confidence 3689999999999976544322210000 00000 0000001 1112223899999999999999999998
Q ss_pred HHHHH
Q psy7275 84 LAGED 88 (150)
Q Consensus 84 e~~~e 88 (150)
+.+.+
T Consensus 205 ~~~~~ 209 (214)
T 2j1l_A 205 EVALS 209 (214)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87654
No 74
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=98.20 E-value=1.7e-06 Score=62.93 Aligned_cols=25 Identities=16% Similarity=0.018 Sum_probs=22.3
Q ss_pred CcEEEeecCCCCCHHHHHHHHHHHH
Q psy7275 62 LKVVGFSSVSGEGTEELLQLIKLAG 86 (150)
Q Consensus 62 l~vv~VSA~TGeGideL~~~I~e~~ 86 (150)
.+++.+||++|+|++++++.|.+.+
T Consensus 155 ~~~~~~Sa~~~~gi~~l~~~l~~~i 179 (182)
T 3bwd_D 155 PAYIECSSKSQENVKGVFDAAIRVV 179 (182)
T ss_dssp SEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
Confidence 4899999999999999999987654
No 75
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=98.20 E-value=4.4e-06 Score=62.24 Aligned_cols=28 Identities=18% Similarity=0.328 Sum_probs=24.2
Q ss_pred CcEEEeecCCCCCHHHHHHHHHHHHHHH
Q psy7275 62 LKVVGFSSVSGEGTEELLQLIKLAGEDY 89 (150)
Q Consensus 62 l~vv~VSA~TGeGideL~~~I~e~~~ey 89 (150)
.+++.+||++|.|+++++..|.+.+.+.
T Consensus 169 ~~~~~~Sa~~g~gi~~l~~~l~~~~~~~ 196 (201)
T 2q3h_A 169 ASYIECSALTQKNLKEVFDAAIVAGIQY 196 (201)
T ss_dssp SEEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCCHHHHHHHHHHHHhcc
Confidence 4899999999999999999998776443
No 76
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=98.19 E-value=1.6e-06 Score=62.01 Aligned_cols=57 Identities=12% Similarity=0.127 Sum_probs=38.9
Q ss_pred CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHH
Q psy7275 5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKL 84 (150)
Q Consensus 5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e 84 (150)
+.|+|+|+||+|+.+.... ..+...+.. ..+ +.+++.+||++|.|+++++..|.+
T Consensus 109 ~~piilv~nK~Dl~~~~~~-----~~~~~~~~~------------------~~~--~~~~~~~Sa~~~~~i~~l~~~l~~ 163 (168)
T 1z2a_A 109 DIPTALVQNKIDLLDDSCI-----KNEEAEGLA------------------KRL--KLRFYRTSVKEDLNVSEVFKYLAE 163 (168)
T ss_dssp SCCEEEEEECGGGGGGCSS-----CHHHHHHHH------------------HHH--TCEEEECBTTTTBSSHHHHHHHHH
T ss_pred CCCEEEEEECcccCccccc-----CHHHHHHHH------------------HHc--CCeEEEEecCCCCCHHHHHHHHHH
Confidence 6899999999998653221 000001100 111 468999999999999999999987
Q ss_pred HH
Q psy7275 85 AG 86 (150)
Q Consensus 85 ~~ 86 (150)
.+
T Consensus 164 ~~ 165 (168)
T 1z2a_A 164 KH 165 (168)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 77
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.19 E-value=1.3e-06 Score=66.59 Aligned_cols=62 Identities=16% Similarity=0.183 Sum_probs=40.9
Q ss_pred CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHH
Q psy7275 5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKL 84 (150)
Q Consensus 5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e 84 (150)
+.|.++|+||+|+.+... .+++.+.+.+ .++....+++.+||++|+|+++++..|.+
T Consensus 164 ~~~~iiv~NK~Dl~~~~~-----~~~~~~~~~~------------------~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~ 220 (226)
T 2hf9_A 164 KTADLIVINKIDLADAVG-----ADIKKMENDA------------------KRINPDAEVVLLSLKTMEGFDKVLEFIEK 220 (226)
T ss_dssp TTCSEEEEECGGGHHHHT-----CCHHHHHHHH------------------HHHCTTSEEEECCTTTCTTHHHHHHHHHH
T ss_pred hcCCEEEEeccccCchhH-----HHHHHHHHHH------------------HHhCCCCeEEEEEecCCCCHHHHHHHHHH
Confidence 356799999999853211 0111112211 12333568999999999999999999987
Q ss_pred HHHHH
Q psy7275 85 AGEDY 89 (150)
Q Consensus 85 ~~~ey 89 (150)
.+.+|
T Consensus 221 ~~~~~ 225 (226)
T 2hf9_A 221 SVKEV 225 (226)
T ss_dssp HHHHC
T ss_pred HHHhh
Confidence 76543
No 78
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=98.19 E-value=3.5e-06 Score=72.42 Aligned_cols=70 Identities=17% Similarity=0.192 Sum_probs=48.0
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK 83 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~ 83 (150)
.++|+|+|+||+|+.+.... ..+.+.+.+.. .-.+....+++.|||++|.|+++++..|.
T Consensus 305 ~~~~~ilv~NK~Dl~~~~~~-----~~~~~~~~~~~---------------~~~~~~~~~~~~~SA~~g~gv~~l~~~i~ 364 (456)
T 4dcu_A 305 AGKAVVIVVNKWDAVDKDES-----TMKEFEENIRD---------------HFQFLDYAPILFMSALTKKRIHTLMPAII 364 (456)
T ss_dssp TTCEEEEEEECGGGSCCCSS-----HHHHHHHHHHH---------------HCGGGTTSCEEECCTTTCTTGGGHHHHHH
T ss_pred cCCCEEEEEEChhcCCCchH-----HHHHHHHHHHH---------------hcccCCCCCEEEEcCCCCcCHHHHHHHHH
Confidence 46899999999999764321 11112222211 00223457999999999999999999999
Q ss_pred HHHHHHHhhh
Q psy7275 84 LAGEDYEKNY 93 (150)
Q Consensus 84 e~~~ey~~~y 93 (150)
+...++....
T Consensus 365 ~~~~~~~~~~ 374 (456)
T 4dcu_A 365 KASENHSLRV 374 (456)
T ss_dssp HHHHHHTCCC
T ss_pred HHHHHhcccC
Confidence 9887776544
No 79
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.18 E-value=7.3e-07 Score=65.97 Aligned_cols=67 Identities=9% Similarity=-0.008 Sum_probs=42.0
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHh-hcCCcEEEeecCCCCCHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEF-YSTLKVVGFSSVSGEGTEELLQLI 82 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~ef-y~~l~vv~VSA~TGeGideL~~~I 82 (150)
.+.|+|+|+||+|+.+..... ...+.+... .+ ..+.+++.+||++|.|++++++.|
T Consensus 116 ~~~piilv~NK~Dl~~~~~~~-------~i~~~~~~~----------------~~~~~~~~~~~~Sa~~g~gi~~l~~~l 172 (187)
T 1zj6_A 116 RKAGLLIFANKQDVKECMTVA-------EISQFLKLT----------------SIKDHQWHIQACCALTGEGLCQGLEWM 172 (187)
T ss_dssp TTCEEEEEEECTTSTTCCCHH-------HHHHHHTGG----------------GCCSSCEEEEECBTTTTBTHHHHHHHH
T ss_pred CCCeEEEEEECCCCcCCCCHH-------HHHHHhChh----------------hhcCCCcEEEEccCCCCcCHHHHHHHH
Confidence 478999999999997542211 111221100 00 123589999999999999999999
Q ss_pred HHHHHHHHhhh
Q psy7275 83 KLAGEDYEKNY 93 (150)
Q Consensus 83 ~e~~~ey~~~y 93 (150)
.+.+......+
T Consensus 173 ~~~~~~~~~~~ 183 (187)
T 1zj6_A 173 MSRLKIRLEHH 183 (187)
T ss_dssp HHHHCC-----
T ss_pred HHHHHHHhhhh
Confidence 88775544433
No 80
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=98.18 E-value=1.1e-06 Score=74.37 Aligned_cols=61 Identities=10% Similarity=0.125 Sum_probs=41.5
Q ss_pred CCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHHH
Q psy7275 6 FPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKLA 85 (150)
Q Consensus 6 lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e~ 85 (150)
.|+|+|+||+|+.+.+...++.++. .+.+.. .+....+++++||++|.|+++|++.|.+.
T Consensus 130 ~~iivviNK~Dl~~~~~~~~~~~~i---~~~l~~-----------------~~~~~~~ii~vSA~~g~gi~~L~~~l~~~ 189 (403)
T 3sjy_A 130 KNLIIVQNKVDVVSKEEALSQYRQI---KQFTKG-----------------TWAENVPIIPVSALHKINIDSLIEGIEEY 189 (403)
T ss_dssp CCEEEEEECGGGSCHHHHHHHHHHH---HHHHTT-----------------STTTTCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred CCEEEEEECccccchHHHHHHHHHH---HHHHHh-----------------hCCCCCEEEEEECCCCcChHHHHHHHHHh
Confidence 3899999999998765433332211 111110 11235799999999999999999998765
Q ss_pred H
Q psy7275 86 G 86 (150)
Q Consensus 86 ~ 86 (150)
+
T Consensus 190 l 190 (403)
T 3sjy_A 190 I 190 (403)
T ss_dssp S
T ss_pred C
Confidence 4
No 81
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=98.18 E-value=3.1e-06 Score=63.94 Aligned_cols=60 Identities=10% Similarity=0.024 Sum_probs=40.4
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCC-cEEEeecCCCCCHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTL-KVVGFSSVSGEGTEELLQLI 82 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l-~vv~VSA~TGeGideL~~~I 82 (150)
.++|+|+|+||+|+.+.... ..+...+.. .. + ++ +++.+||++|+|+++++..|
T Consensus 133 ~~~piilv~NK~Dl~~~~~v-----~~~~~~~~~------------------~~-~-~~~~~~~~SA~~g~gi~~l~~~l 187 (201)
T 2hup_A 133 SNIVQLLIGNKSDLSELREV-----SLAEAQSLA------------------EH-Y-DILCAIETSAKDSSNVEEAFLRV 187 (201)
T ss_dssp TTCEEEEEEECTTCGGGCCS-----CHHHHHHHH------------------HH-T-TCSEEEECBTTTTBSHHHHHHHH
T ss_pred CCCCEEEEEECCcccccccc-----CHHHHHHHH------------------HH-c-CCCEEEEEeCCCCCCHHHHHHHH
Confidence 46899999999998643211 011111110 01 1 35 88999999999999999999
Q ss_pred HHHHHH
Q psy7275 83 KLAGED 88 (150)
Q Consensus 83 ~e~~~e 88 (150)
.+.+.+
T Consensus 188 ~~~i~~ 193 (201)
T 2hup_A 188 ATELIM 193 (201)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887643
No 82
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=98.17 E-value=1.9e-06 Score=64.40 Aligned_cols=60 Identities=5% Similarity=-0.072 Sum_probs=40.3
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK 83 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~ 83 (150)
.+.|+|+|+||+|+.+.... ..+...+ + ...+...+++.+||++|.|+++++..|.
T Consensus 130 ~~~piilV~NK~Dl~~~~~v-----~~~~~~~-~------------------~~~~~~~~~~~~SA~~g~gi~~l~~~l~ 185 (192)
T 2il1_A 130 EDAELLLVGNKLDCETDREI-----TRQQGEK-F------------------AQQITGMRFCEASAKDNFNVDEIFLKLV 185 (192)
T ss_dssp TTCEEEEEEECGGGGGGCCS-----CHHHHHH-H------------------HHTSTTCEEEECBTTTTBSHHHHHHHHH
T ss_pred CCCcEEEEEECccccccccc-----CHHHHHH-H------------------HHhcCCCeEEEEeCCCCCCHHHHHHHHH
Confidence 46899999999998643221 0000000 0 0112357899999999999999999998
Q ss_pred HHHH
Q psy7275 84 LAGE 87 (150)
Q Consensus 84 e~~~ 87 (150)
+.+.
T Consensus 186 ~~i~ 189 (192)
T 2il1_A 186 DDIL 189 (192)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7653
No 83
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.17 E-value=4.2e-06 Score=63.18 Aligned_cols=70 Identities=11% Similarity=0.132 Sum_probs=41.4
Q ss_pred CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHH
Q psy7275 5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKL 84 (150)
Q Consensus 5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e 84 (150)
++|+|+|+||+|+.+.....+++.+ +.... ........ +..-+...+++.+||++|.|++++++.|.+
T Consensus 129 ~~piilv~nK~Dl~~~~~~~~~~~~-------~~~~~-v~~~~~~~----~~~~~~~~~~~~~SA~~g~gi~el~~~l~~ 196 (207)
T 2fv8_A 129 NVPIILVANKKDLRSDEHVRTELAR-------MKQEP-VRTDDGRA----MAVRIQAYDYLECSAKTKEGVREVFETATR 196 (207)
T ss_dssp TCCEEEEEECGGGGGCHHHHHHHHH-------TTCCC-CCHHHHHH----HHHHTTCSEEEECCTTTCTTHHHHHHHHHH
T ss_pred CCCEEEEEEchhhhccccchhhhhh-------cccCC-CCHHHHHH----HHHhcCCCEEEEeeCCCCCCHHHHHHHHHH
Confidence 7899999999999765443222211 00000 00000000 011122238899999999999999999987
Q ss_pred HH
Q psy7275 85 AG 86 (150)
Q Consensus 85 ~~ 86 (150)
.+
T Consensus 197 ~i 198 (207)
T 2fv8_A 197 AA 198 (207)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 84
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.16 E-value=3.8e-06 Score=61.24 Aligned_cols=61 Identities=18% Similarity=0.093 Sum_probs=40.9
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHh-hcCCcEEEeecCCCCCHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEF-YSTLKVVGFSSVSGEGTEELLQLI 82 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~ef-y~~l~vv~VSA~TGeGideL~~~I 82 (150)
.+.|+|+|+||+|+.+..... .+.+.+... .. ....+++.+||++|+|++++++.|
T Consensus 118 ~~~piilv~nK~Dl~~~~~~~-------~i~~~~~~~----------------~~~~~~~~~~~~Sa~~~~gi~~l~~~l 174 (183)
T 1moz_A 118 QDAALLVFANKQDQPGALSAS-------EVSKELNLV----------------ELKDRSWSIVASSAIKGEGITEGLDWL 174 (183)
T ss_dssp SSCEEEEEEECTTSTTCCCHH-------HHHHHTTTT----------------TCCSSCEEEEEEBGGGTBTHHHHHHHH
T ss_pred CCCeEEEEEECCCCCCCCCHH-------HHHHHhCcc----------------cccCCceEEEEccCCCCcCHHHHHHHH
Confidence 578999999999997642211 111111100 00 123478999999999999999999
Q ss_pred HHHHH
Q psy7275 83 KLAGE 87 (150)
Q Consensus 83 ~e~~~ 87 (150)
.+.+.
T Consensus 175 ~~~~~ 179 (183)
T 1moz_A 175 IDVIK 179 (183)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87764
No 85
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=98.16 E-value=2.2e-06 Score=61.31 Aligned_cols=58 Identities=16% Similarity=0.016 Sum_probs=38.6
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK 83 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~ 83 (150)
.++|+|+|+||+|+.+...... +.. .. + ... .+.+++.+||++|.|++++++.|.
T Consensus 108 ~~~pii~v~nK~Dl~~~~~v~~-----~~~-~~----------~-------~~~--~~~~~~~~Sa~~~~gi~~l~~~l~ 162 (172)
T 2erx_A 108 ESIPIMLVGNKCDESPSREVQS-----SEA-EA----------L-------ART--WKCAFMETSAKLNHNVKELFQELL 162 (172)
T ss_dssp -CCCEEEEEECGGGGGGCCSCH-----HHH-HH----------H-------HHH--HTCEEEECBTTTTBSHHHHHHHHH
T ss_pred CCCCEEEEEEccccccccccCH-----HHH-HH----------H-------HHH--hCCeEEEecCCCCcCHHHHHHHHH
Confidence 3689999999999865432100 000 00 0 001 146899999999999999999987
Q ss_pred HHH
Q psy7275 84 LAG 86 (150)
Q Consensus 84 e~~ 86 (150)
+.+
T Consensus 163 ~~~ 165 (172)
T 2erx_A 163 NLE 165 (172)
T ss_dssp HTC
T ss_pred HHH
Confidence 654
No 86
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=98.15 E-value=2.7e-06 Score=60.85 Aligned_cols=57 Identities=12% Similarity=-0.039 Sum_probs=38.9
Q ss_pred CCCCEEEeeecCCCCCchhh-HHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYA-IEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLI 82 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~-~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I 82 (150)
..+|+++|+||+|+.+.... .+.. .. + ... .+.+++.+||++|.|+++++..|
T Consensus 110 ~~~~iilv~nK~Dl~~~~~v~~~~~------~~-----------~-------~~~--~~~~~~~~Sa~~~~~i~~l~~~i 163 (170)
T 1z0j_A 110 PSIVVAIAGNKCDLTDVREVMERDA------KD-----------Y-------ADS--IHAIFVETSAKNAININELFIEI 163 (170)
T ss_dssp TTSEEEEEEECTTCGGGCCSCHHHH------HH-----------H-------HHH--TTCEEEECBTTTTBSHHHHHHHH
T ss_pred CCCcEEEEEECCccccccccCHHHH------HH-----------H-------HHH--cCCEEEEEeCCCCcCHHHHHHHH
Confidence 46799999999999653221 1100 00 0 001 14689999999999999999998
Q ss_pred HHHH
Q psy7275 83 KLAG 86 (150)
Q Consensus 83 ~e~~ 86 (150)
.+.+
T Consensus 164 ~~~i 167 (170)
T 1z0j_A 164 SRRI 167 (170)
T ss_dssp HHHC
T ss_pred HHHH
Confidence 7653
No 87
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=98.15 E-value=5.5e-06 Score=62.50 Aligned_cols=59 Identities=15% Similarity=0.077 Sum_probs=40.2
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK 83 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~ 83 (150)
..+|+|+|.||+|+.+.... ..+...+ +.+ . + +.+++.+||++|.|+++++..|.
T Consensus 129 ~~~piilv~nK~Dl~~~~~v-----~~~~~~~-----------~a~-------~-~-~~~~~e~Sa~~~~~v~~lf~~l~ 183 (195)
T 3cbq_A 129 HDLPVILVGNKSDLARSREV-----SLEEGRH-----------LAG-------T-L-SCKHIETSAALHHNTRELFEGAV 183 (195)
T ss_dssp SCCCEEEEEECTTCTTTCCS-----CHHHHHH-----------HHH-------H-T-TCEEEEEBTTTTBSHHHHHHHHH
T ss_pred CCCCEEEEeechhccccCCc-----CHHHHHH-----------HHH-------H-h-CCEEEEEcCCCCCCHHHHHHHHH
Confidence 37899999999999753221 0111111 000 1 1 36899999999999999999998
Q ss_pred HHHH
Q psy7275 84 LAGE 87 (150)
Q Consensus 84 e~~~ 87 (150)
+.+.
T Consensus 184 ~~i~ 187 (195)
T 3cbq_A 184 RQIR 187 (195)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7664
No 88
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=98.15 E-value=2.5e-06 Score=64.32 Aligned_cols=25 Identities=12% Similarity=0.234 Sum_probs=20.4
Q ss_pred CCcEEEeecCCC------CCHHHHHHHHHHH
Q psy7275 61 TLKVVGFSSVSG------EGTEELLQLIKLA 85 (150)
Q Consensus 61 ~l~vv~VSA~TG------eGideL~~~I~e~ 85 (150)
..+++.+||++| .|++++++.|.+.
T Consensus 183 ~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 183 KVEFLECSAKGGRGDTGSADIQDLEKWLAKI 213 (214)
T ss_dssp CEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred cEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence 567999999999 9999999998764
No 89
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=98.15 E-value=6.1e-07 Score=71.64 Aligned_cols=73 Identities=23% Similarity=0.260 Sum_probs=48.8
Q ss_pred CCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHHH
Q psy7275 6 FPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKLA 85 (150)
Q Consensus 6 lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e~ 85 (150)
+|+|+|+||+|+.+.... -.+...+.+ . . +++++++||++|.|+++++..|.+.
T Consensus 110 ~p~ilv~NK~Dl~~~~~~---~~~~~~l~~---------------------~-l-g~~~~~~Sa~~g~gi~~l~~~i~~~ 163 (271)
T 3k53_A 110 KNIILVLNKFDLLKKKGA---KIDIKKMRK---------------------E-L-GVPVIPTNAKKGEGVEELKRMIALM 163 (271)
T ss_dssp CSEEEEEECHHHHHHHTC---CCCHHHHHH---------------------H-H-SSCEEECBGGGTBTHHHHHHHHHHH
T ss_pred CCEEEEEEChhcCccccc---HHHHHHHHH---------------------H-c-CCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 899999999997532211 001111111 1 1 4799999999999999999999988
Q ss_pred HHHH------HhhhHHHHHHHHHHH
Q psy7275 86 GEDY------EKNYRVEWIRLRDEK 104 (150)
Q Consensus 86 ~~ey------~~~y~pe~e~~~~~~ 104 (150)
+... ...|.+++++...+-
T Consensus 164 ~~~~~~~~~~~~~~~~~~e~~~~~l 188 (271)
T 3k53_A 164 AEGKVTTNPIIPRYDEDIEREIKHI 188 (271)
T ss_dssp HHTCCCCCCCCCCCCHHHHHHHHHH
T ss_pred HhccccCCCCCcCCCHHHHHHHHHH
Confidence 7643 235666666665544
No 90
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=98.15 E-value=3.5e-06 Score=61.89 Aligned_cols=62 Identities=21% Similarity=0.189 Sum_probs=41.9
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHh-hcCCcEEEeecCCCCCHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEF-YSTLKVVGFSSVSGEGTEELLQLI 82 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~ef-y~~l~vv~VSA~TGeGideL~~~I 82 (150)
.+.|+|+|+||+|+.+.... +.+.+.+.. ... ....+++.+||++|.|++++++.|
T Consensus 118 ~~~piilv~nK~Dl~~~~~~-------~~~~~~~~~----------------~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 174 (186)
T 1ksh_A 118 AGATLLIFANKQDLPGALSC-------NAIQEALEL----------------DSIRSHHWRIQGCSAVTGEDLLPGIDWL 174 (186)
T ss_dssp TTCEEEEEEECTTSTTCCCH-------HHHHHHTTG----------------GGCCSSCEEEEECCTTTCTTHHHHHHHH
T ss_pred CCCcEEEEEeCccCCCCCCH-------HHHHHHhCh----------------hhccCCceEEEEeeCCCCCCHHHHHHHH
Confidence 46899999999999764321 111121110 000 124589999999999999999999
Q ss_pred HHHHHH
Q psy7275 83 KLAGED 88 (150)
Q Consensus 83 ~e~~~e 88 (150)
.+.+.+
T Consensus 175 ~~~i~~ 180 (186)
T 1ksh_A 175 LDDISS 180 (186)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 887743
No 91
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=98.14 E-value=2.3e-06 Score=61.74 Aligned_cols=58 Identities=12% Similarity=0.078 Sum_probs=39.0
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK 83 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~ 83 (150)
.++|+|+|+||+|+.+.... ..+...... .. .+.+++.+||++|.|++++++.|.
T Consensus 118 ~~~piilv~nK~Dl~~~~~~-----~~~~~~~~~------------------~~--~~~~~~~~Sa~~~~~i~~l~~~l~ 172 (179)
T 2y8e_A 118 SDVIIMLVGNKTDLSDKRQV-----STEEGERKA------------------KE--LNVMFIETSAKAGYNVKQLFRRVA 172 (179)
T ss_dssp TSSEEEEEEECGGGGGGCCS-----CHHHHHHHH------------------HH--HTCEEEEEBTTTTBSHHHHHHHHH
T ss_pred CCCcEEEEEECCcccccCcC-----CHHHHHHHH------------------HH--cCCeEEEEeCCCCCCHHHHHHHHH
Confidence 46899999999998643221 000000100 01 146899999999999999999987
Q ss_pred HHH
Q psy7275 84 LAG 86 (150)
Q Consensus 84 e~~ 86 (150)
+.+
T Consensus 173 ~~~ 175 (179)
T 2y8e_A 173 AAL 175 (179)
T ss_dssp HTC
T ss_pred HHH
Confidence 654
No 92
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=98.13 E-value=1.7e-06 Score=64.32 Aligned_cols=61 Identities=15% Similarity=0.089 Sum_probs=40.3
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK 83 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~ 83 (150)
.++|+|+|+||+|+.+.....+ +.+.+... . . .....+++.|||++|.|++++++.|.
T Consensus 123 ~~~piilv~NK~Dl~~~~~~~~-------~~~~~~~~------~-------~--~~~~~~~~~~SA~~g~gv~~l~~~l~ 180 (188)
T 1zd9_A 123 QGIPVLVLGNKRDLPGALDEKE-------LIEKMNLS------A-------I--QDREICCYSISCKEKDNIDITLQWLI 180 (188)
T ss_dssp TTCCEEEEEECTTSTTCCCHHH-------HHHHTTGG------G-------C--CSSCEEEEECCTTTCTTHHHHHHHHH
T ss_pred CCCCEEEEEECCCCccCCCHHH-------HHHHhChh------h-------h--ccCCeeEEEEECCCCCCHHHHHHHHH
Confidence 5789999999999976432111 11111100 0 0 01235789999999999999999998
Q ss_pred HHH
Q psy7275 84 LAG 86 (150)
Q Consensus 84 e~~ 86 (150)
+.+
T Consensus 181 ~~~ 183 (188)
T 1zd9_A 181 QHS 183 (188)
T ss_dssp HTC
T ss_pred HHH
Confidence 755
No 93
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=98.13 E-value=3.8e-06 Score=62.03 Aligned_cols=61 Identities=18% Similarity=0.101 Sum_probs=41.3
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhh--cCCcEEEeecCCCCCHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFY--STLKVVGFSSVSGEGTEELLQL 81 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy--~~l~vv~VSA~TGeGideL~~~ 81 (150)
.+.|+|+|+||+|+.+.....+ +.+.+.. ++. .+.+++.+||++|.|++++++.
T Consensus 122 ~~~piilv~nK~Dl~~~~~~~~-------~~~~~~~-----------------~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 177 (189)
T 2x77_A 122 RKSLLLIFANKQDLPDAASEAE-------IAEQLGV-----------------SSIMNRTWTIVKSSSKTGDGLVEGMDW 177 (189)
T ss_dssp TTCEEEEEEECTTSTTCCCHHH-------HHHHTTG-----------------GGCCSSCEEEEECCTTTCTTHHHHHHH
T ss_pred CCCeEEEEEECCCCcCCCCHHH-------HHHHhCh-----------------hhccCCceEEEEccCCCccCHHHHHHH
Confidence 4789999999999976532111 1111110 011 1347999999999999999999
Q ss_pred HHHHHHH
Q psy7275 82 IKLAGED 88 (150)
Q Consensus 82 I~e~~~e 88 (150)
|.+.+.+
T Consensus 178 l~~~i~~ 184 (189)
T 2x77_A 178 LVERLRE 184 (189)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9877643
No 94
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.13 E-value=4e-06 Score=62.51 Aligned_cols=60 Identities=15% Similarity=0.126 Sum_probs=40.4
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCC-CHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGE-GTEELLQLI 82 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGe-GideL~~~I 82 (150)
.++|+|+|+||+|+.+.... ..+ +... +. .++ +.+++.+||++|. |++++++.|
T Consensus 131 ~~~piilv~NK~Dl~~~~~v-----~~~---~~~~--------~~-------~~~--~~~~~~~Sa~~g~~gi~~l~~~l 185 (196)
T 2atv_A 131 KNVTLILVGNKADLDHSRQV-----STE---EGEK--------LA-------TEL--ACAFYECSACTGEGNITEIFYEL 185 (196)
T ss_dssp SCCCEEEEEECGGGGGGCCS-----CHH---HHHH--------HH-------HHH--TSEEEECCTTTCTTCHHHHHHHH
T ss_pred CCCcEEEEEECccccccccc-----CHH---HHHH--------HH-------HHh--CCeEEEECCCcCCcCHHHHHHHH
Confidence 47899999999998653211 000 1100 00 111 4689999999999 999999999
Q ss_pred HHHHHH
Q psy7275 83 KLAGED 88 (150)
Q Consensus 83 ~e~~~e 88 (150)
.+.+.+
T Consensus 186 ~~~i~~ 191 (196)
T 2atv_A 186 CREVRR 191 (196)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 876643
No 95
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=98.12 E-value=2.4e-06 Score=63.43 Aligned_cols=62 Identities=15% Similarity=0.170 Sum_probs=40.0
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK 83 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~ 83 (150)
.+.|+|+|+||+|+.+..... .+.+.+... . . .....+++.+||++|+|++++++.|.
T Consensus 116 ~~~piilv~NK~Dl~~~~~~~-------~~~~~~~~~------~-------~--~~~~~~~~~~Sa~~g~gi~~l~~~l~ 173 (181)
T 1fzq_A 116 SCVPVLIFANKQDLLTAAPAS-------EIAEGLNLH------T-------I--RDRVWQIQSCSALTGEGVQDGMNWVC 173 (181)
T ss_dssp TTCCEEEEEECTTSTTCCCHH-------HHHHHTTGG------G-------C--CSSCEEEEECCTTTCTTHHHHHHHHH
T ss_pred cCCCEEEEEECcCcccCCCHH-------HHHHHhCch------h-------c--cCCceEEEEccCCCCCCHHHHHHHHH
Confidence 468999999999997643211 111111100 0 0 01235789999999999999999997
Q ss_pred HHHH
Q psy7275 84 LAGE 87 (150)
Q Consensus 84 e~~~ 87 (150)
+.+.
T Consensus 174 ~~~~ 177 (181)
T 1fzq_A 174 KNVN 177 (181)
T ss_dssp HTC-
T ss_pred HHHH
Confidence 7553
No 96
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=98.12 E-value=3.9e-06 Score=60.75 Aligned_cols=27 Identities=11% Similarity=-0.068 Sum_probs=23.8
Q ss_pred CCcEEEeecCCCCCHHHHHHHHHHHHH
Q psy7275 61 TLKVVGFSSVSGEGTEELLQLIKLAGE 87 (150)
Q Consensus 61 ~l~vv~VSA~TGeGideL~~~I~e~~~ 87 (150)
+++++.+||++|.|+++++..|.+.+.
T Consensus 146 ~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 172 (178)
T 2hxs_A 146 GFSSHFVSAKTGDSVFLCFQKVAAEIL 172 (178)
T ss_dssp TCEEEEECTTTCTTHHHHHHHHHHHHT
T ss_pred CCcEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 468999999999999999999987653
No 97
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=98.11 E-value=7.3e-07 Score=72.39 Aligned_cols=72 Identities=15% Similarity=0.140 Sum_probs=45.9
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK 83 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~ 83 (150)
.++|+|+|+||+|+...... ..+.+.+... . +.+++++||++|.|+++++..|.
T Consensus 106 ~~~p~ilv~NK~Dl~~~~~~---~~~~~~l~~~----------------------l-g~~vi~~SA~~g~gi~el~~~i~ 159 (272)
T 3b1v_A 106 TGIPVTIALNMIDVLDGQGK---KINVDKLSYH----------------------L-GVPVVATSALKQTGVDQVVKKAA 159 (272)
T ss_dssp TCSCEEEEEECHHHHHHTTC---CCCHHHHHHH----------------------H-TSCEEECBTTTTBSHHHHHHHHH
T ss_pred cCCCEEEEEEChhhCCcCCc---HHHHHHHHHH----------------------c-CCCEEEEEccCCCCHHHHHHHHH
Confidence 47899999999997432111 0111111111 1 46899999999999999999998
Q ss_pred HHHHHH-----HhhhHHHHHHHH
Q psy7275 84 LAGEDY-----EKNYRVEWIRLR 101 (150)
Q Consensus 84 e~~~ey-----~~~y~pe~e~~~ 101 (150)
+.+..- ...|.+++|...
T Consensus 160 ~~~~~~~~~~~~~~~~~~~e~~i 182 (272)
T 3b1v_A 160 HTTTSTVGDLAFPIYDDRLEAAI 182 (272)
T ss_dssp HSCTTTCCSCCCCCCCHHHHHHH
T ss_pred HHHhhccCCCccCCCCHHHHHHH
Confidence 765321 124655555444
No 98
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=98.11 E-value=4.7e-06 Score=64.85 Aligned_cols=57 Identities=18% Similarity=0.113 Sum_probs=38.5
Q ss_pred CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHH
Q psy7275 5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKL 84 (150)
Q Consensus 5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e 84 (150)
++|+|+|.||+|+.+.... ..+ +... + ...+ +.+++.+||++|+|++++|..|.+
T Consensus 145 ~~piilVgNK~DL~~~r~v-----~~~---e~~~--------~-------a~~~--~~~~~e~SAk~g~~v~elf~~l~~ 199 (211)
T 2g3y_A 145 DIPIILVGNKSDLVRCREV-----SVS---EGRA--------C-------AVVF--DCKFIETSAAVQHNVKELFEGIVR 199 (211)
T ss_dssp TSCEEEEEECTTCGGGCCS-----CHH---HHHH--------H-------HHHH--TCEEEECBTTTTBSHHHHHHHHHH
T ss_pred CCcEEEEEEChHHhcCceE-----eHH---HHHH--------H-------HHHc--CCEEEEEeCCCCCCHHHHHHHHHH
Confidence 6899999999998642211 000 0000 0 0111 468999999999999999999987
Q ss_pred HH
Q psy7275 85 AG 86 (150)
Q Consensus 85 ~~ 86 (150)
.+
T Consensus 200 ~i 201 (211)
T 2g3y_A 200 QV 201 (211)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 99
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=98.11 E-value=2.7e-06 Score=60.83 Aligned_cols=59 Identities=17% Similarity=0.086 Sum_probs=39.7
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhh--cCCcEEEeecCCCCCHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFY--STLKVVGFSSVSGEGTEELLQL 81 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy--~~l~vv~VSA~TGeGideL~~~ 81 (150)
.+.|+|+|+||+|+.+.....+ +.+.+.. .+. ...+++.+||++|.|++++++.
T Consensus 100 ~~~piilv~nK~Dl~~~~~~~~-------~~~~~~~-----------------~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 155 (164)
T 1r8s_A 100 RDAVLLVFANKQDLPNAMNAAE-------ITDKLGL-----------------HSLRHRNWYIQATCATSGDGLYEGLDW 155 (164)
T ss_dssp TTCEEEEEEECTTSTTCCCHHH-------HHHHTTG-----------------GGCSSCCEEEEECBTTTTBTHHHHHHH
T ss_pred cCCeEEEEEECcCCcCCCCHHH-------HHHHhCc-----------------ccccCccEEEEEcccCCCcCHHHHHHH
Confidence 3689999999999976432111 1111110 011 1347899999999999999999
Q ss_pred HHHHH
Q psy7275 82 IKLAG 86 (150)
Q Consensus 82 I~e~~ 86 (150)
|.+.+
T Consensus 156 l~~~i 160 (164)
T 1r8s_A 156 LSNQL 160 (164)
T ss_dssp HHHHC
T ss_pred HHHHH
Confidence 97754
No 100
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=98.10 E-value=2.2e-07 Score=74.99 Aligned_cols=72 Identities=17% Similarity=0.199 Sum_probs=46.2
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK 83 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~ 83 (150)
.++|+|+|+||+|+.+.... ..+.+.+.+. + +.+++++||++|.|+++|++.|.
T Consensus 111 ~~~p~ivv~NK~Dl~~~~~~---~~~~~~l~~~----------------------l-g~~~i~~SA~~g~gi~el~~~i~ 164 (274)
T 3i8s_A 111 LGIPCIVALNMLDIAEKQNI---RIEIDALSAR----------------------L-GCPVIPLVSTRGRGIEALKLAID 164 (274)
T ss_dssp HTCCEEEEEECHHHHHHTTE---EECHHHHHHH----------------------H-TSCEEECCCGGGHHHHHHHHHHH
T ss_pred cCCCEEEEEECccchhhhhH---HHHHHHHHHh----------------------c-CCCEEEEEcCCCCCHHHHHHHHH
Confidence 47899999999998532211 1122211111 1 46999999999999999999998
Q ss_pred HHHHH---HHhhhHHHHHHHH
Q psy7275 84 LAGED---YEKNYRVEWIRLR 101 (150)
Q Consensus 84 e~~~e---y~~~y~pe~e~~~ 101 (150)
+.+.. ....|.+++++..
T Consensus 165 ~~~~~~~~~~~~~~~~l~~~~ 185 (274)
T 3i8s_A 165 RYKANENVELVHYAQPLLNEA 185 (274)
T ss_dssp TCCCCCCCCCCCCCHHHHHHH
T ss_pred HHHhcCCCcccCCCHHHHHHH
Confidence 76531 1234555554443
No 101
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.10 E-value=2.4e-06 Score=70.09 Aligned_cols=54 Identities=20% Similarity=0.351 Sum_probs=37.7
Q ss_pred CCCCEEEeeecCCCCCchh---hHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKY---AIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQ 80 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~---~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~ 80 (150)
.++|+|+|+||+|+.+... ..+|. +.. .+ .+.+++.+||++|+|+++|+.
T Consensus 109 ~~~~~ilV~NK~DL~~~~~v~~~~~~~-------~~~------------------~~--~g~~~~~~SA~~g~gi~~L~~ 161 (302)
T 2yv5_A 109 FKVEPVIVFNKIDLLNEEEKKELERWI-------SIY------------------RD--AGYDVLKVSAKTGEGIDELVD 161 (302)
T ss_dssp TTCEEEEEECCGGGCCHHHHHHHHHHH-------HHH------------------HH--TTCEEEECCTTTCTTHHHHHH
T ss_pred CCCCEEEEEEcccCCCccccHHHHHHH-------HHH------------------HH--CCCeEEEEECCCCCCHHHHHh
Confidence 5789999999999976532 11221 100 01 145899999999999999998
Q ss_pred HHHH
Q psy7275 81 LIKL 84 (150)
Q Consensus 81 ~I~e 84 (150)
.+..
T Consensus 162 ~l~G 165 (302)
T 2yv5_A 162 YLEG 165 (302)
T ss_dssp HTTT
T ss_pred hccC
Confidence 7753
No 102
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=98.09 E-value=3.2e-06 Score=62.95 Aligned_cols=58 Identities=17% Similarity=0.021 Sum_probs=39.2
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK 83 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~ 83 (150)
.++|+|+|+||+|+.+.... ..+...+.. .+ .+.+++.+||++|.|++++++.|.
T Consensus 127 ~~~piiiv~NK~Dl~~~~~v-----~~~~~~~~~------------------~~--~~~~~~~~Sa~~~~gi~~l~~~l~ 181 (192)
T 2fg5_A 127 ENIVMAIAGNKCDLSDIREV-----PLKDAKEYA------------------ES--IGAIVVETSAKNAINIEELFQGIS 181 (192)
T ss_dssp TTCEEEEEEECGGGGGGCCS-----CHHHHHHHH------------------HT--TTCEEEECBTTTTBSHHHHHHHHH
T ss_pred CCCcEEEEEECccccccccc-----CHHHHHHHH------------------HH--cCCEEEEEeCCCCcCHHHHHHHHH
Confidence 36899999999998642211 011111111 01 146899999999999999999998
Q ss_pred HHH
Q psy7275 84 LAG 86 (150)
Q Consensus 84 e~~ 86 (150)
+.+
T Consensus 182 ~~i 184 (192)
T 2fg5_A 182 RQI 184 (192)
T ss_dssp HTC
T ss_pred HHH
Confidence 755
No 103
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.09 E-value=4.3e-06 Score=63.74 Aligned_cols=59 Identities=10% Similarity=-0.000 Sum_probs=39.5
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK 83 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~ 83 (150)
.++|+|+|+||+|+.+..... .+...... .. .+.+++.+||++|.|+++++..|.
T Consensus 130 ~~~piilv~NK~Dl~~~~~v~-----~~~~~~~~------------------~~--~~~~~~~~Sa~~g~gv~~l~~~l~ 184 (201)
T 2ew1_A 130 NKVITVLVGNKIDLAERREVS-----QQRAEEFS------------------EA--QDMYYLETSAKESDNVEKLFLDLA 184 (201)
T ss_dssp TTCEEEEEEECGGGGGGCSSC-----HHHHHHHH------------------HH--HTCCEEECCTTTCTTHHHHHHHHH
T ss_pred CCCCEEEEEECCCCccccccC-----HHHHHHHH------------------HH--cCCEEEEEeCCCCCCHHHHHHHHH
Confidence 468999999999986432210 00000000 01 146899999999999999999998
Q ss_pred HHHH
Q psy7275 84 LAGE 87 (150)
Q Consensus 84 e~~~ 87 (150)
+.+.
T Consensus 185 ~~i~ 188 (201)
T 2ew1_A 185 CRLI 188 (201)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7664
No 104
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=98.09 E-value=1.4e-06 Score=63.56 Aligned_cols=26 Identities=38% Similarity=0.423 Sum_probs=22.7
Q ss_pred CCcEEEeecCCCCCHHHHHHHHHHHH
Q psy7275 61 TLKVVGFSSVSGEGTEELLQLIKLAG 86 (150)
Q Consensus 61 ~l~vv~VSA~TGeGideL~~~I~e~~ 86 (150)
+.+++.+||++|+|+++++..|.+.+
T Consensus 138 ~~~~~~~SA~~~~~v~~l~~~l~~~~ 163 (165)
T 2wji_A 138 GVKVVPLSAAKKMGIEELKKAISIAV 163 (165)
T ss_dssp TSCEEECBGGGTBSHHHHHHHHHHHT
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHh
Confidence 36899999999999999999987653
No 105
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.08 E-value=5.2e-06 Score=67.74 Aligned_cols=58 Identities=19% Similarity=0.350 Sum_probs=43.5
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK 83 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~ 83 (150)
.++|.|+|+||+|+.+......|.+-++ ..+++++.+||.+|.|+++|++.+.
T Consensus 49 ~~kp~ilVlNK~DL~~~~~~~~~~~~~~---------------------------~~g~~~i~iSA~~~~gi~~L~~~i~ 101 (282)
T 1puj_A 49 KNKPRIMLLNKADKADAAVTQQWKEHFE---------------------------NQGIRSLSINSVNGQGLNQIVPASK 101 (282)
T ss_dssp SSSCEEEEEECGGGSCHHHHHHHHHHHH---------------------------TTTCCEEECCTTTCTTGGGHHHHHH
T ss_pred CCCCEEEEEECcccCCHHHHHHHHHHHH---------------------------hcCCcEEEEECCCcccHHHHHHHHH
Confidence 3679999999999987554445552110 0146899999999999999999888
Q ss_pred HHHHH
Q psy7275 84 LAGED 88 (150)
Q Consensus 84 e~~~e 88 (150)
+.+.+
T Consensus 102 ~~l~~ 106 (282)
T 1puj_A 102 EILQE 106 (282)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76654
No 106
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=98.07 E-value=4.2e-06 Score=63.14 Aligned_cols=24 Identities=21% Similarity=0.206 Sum_probs=21.4
Q ss_pred CCcEEEeecCCCCCHHHHHHHHHH
Q psy7275 61 TLKVVGFSSVSGEGTEELLQLIKL 84 (150)
Q Consensus 61 ~l~vv~VSA~TGeGideL~~~I~e 84 (150)
..+++.+||++|+|++++++.|.+
T Consensus 172 ~~~~~~~SA~~g~gv~~l~~~l~~ 195 (198)
T 1f6b_A 172 PLEVFMCSVLKRQGYGEGFRWMAQ 195 (198)
T ss_dssp CEEEEECBTTTTBSHHHHHHHHHT
T ss_pred eEEEEEEECCCCCCHHHHHHHHHH
Confidence 458999999999999999998865
No 107
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=97.33 E-value=5.2e-07 Score=67.80 Aligned_cols=69 Identities=13% Similarity=0.146 Sum_probs=39.6
Q ss_pred CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHH
Q psy7275 5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKL 84 (150)
Q Consensus 5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e 84 (150)
++|+|+|+||+|+.+.....+++.+... ..+..+ ....+. .-+...+++.+||++|+|++++++.|.+
T Consensus 134 ~~piilv~NK~Dl~~~~~~~~~~~~~~~--~~v~~~--~~~~~~--------~~~~~~~~~~vSA~~g~gi~~l~~~l~~ 201 (204)
T 3th5_A 134 NTPIILVGTKLDLRDDKDTIEKLKEKKL--TPITYP--QGLAMA--------KEIGAVKYLECSALTQRGLKTVFDEAIR 201 (204)
Confidence 6899999999999765432222211100 000000 000010 1111137889999999999999998876
Q ss_pred H
Q psy7275 85 A 85 (150)
Q Consensus 85 ~ 85 (150)
.
T Consensus 202 ~ 202 (204)
T 3th5_A 202 A 202 (204)
Confidence 4
No 108
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=98.06 E-value=1.5e-05 Score=59.96 Aligned_cols=27 Identities=19% Similarity=0.129 Sum_probs=23.7
Q ss_pred CCcEEEeecCCCCCHHHHHHHHHHHHH
Q psy7275 61 TLKVVGFSSVSGEGTEELLQLIKLAGE 87 (150)
Q Consensus 61 ~l~vv~VSA~TGeGideL~~~I~e~~~ 87 (150)
+.+++.+||++|.|+++++..|.+.+.
T Consensus 145 ~~~~~e~SA~~g~~v~~lf~~l~~~~~ 171 (192)
T 2cjw_A 145 DXKFIETSAAVQHNVKELFEGIVRQVR 171 (192)
T ss_dssp TCEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred CCceEEeccccCCCHHHHHHHHHHHHH
Confidence 358899999999999999999987664
No 109
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.04 E-value=4.3e-06 Score=59.64 Aligned_cols=60 Identities=18% Similarity=0.069 Sum_probs=38.4
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK 83 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~ 83 (150)
.++|+|+|+||+|+.+.....+.. .+.. .. +. .. .+.+++.+||++|.|+++++..|.
T Consensus 107 ~~~piilv~nK~Dl~~~~~~~~v~--~~~~-~~----------~~-------~~--~~~~~~~~Sa~~~~gi~~l~~~l~ 164 (170)
T 1ek0_A 107 KDIIIALVGNKIDXLQEGGERKVA--REEG-EK----------LA-------EE--KGLLFFETSAKTGENVNDVFLGIG 164 (170)
T ss_dssp TTCEEEEEEECGGGGGSSCCCCSC--HHHH-HH----------HH-------HH--HTCEEEECCTTTCTTHHHHHHHHH
T ss_pred CCCcEEEEEECCCccccccccCCC--HHHH-HH----------HH-------HH--cCCEEEEEeCCCCCCHHHHHHHHH
Confidence 478999999999986542110000 0000 00 00 01 146899999999999999999987
Q ss_pred HH
Q psy7275 84 LA 85 (150)
Q Consensus 84 e~ 85 (150)
+.
T Consensus 165 ~~ 166 (170)
T 1ek0_A 165 EK 166 (170)
T ss_dssp TT
T ss_pred HH
Confidence 54
No 110
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.04 E-value=6.7e-06 Score=69.45 Aligned_cols=57 Identities=18% Similarity=0.210 Sum_probs=39.7
Q ss_pred CCCEEEeeecCCCCCch----hhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHh-hcCCcEEEeecCCCCCHHHHH
Q psy7275 5 GFPYTELVVGIDIVNHK----YAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEF-YSTLKVVGFSSVSGEGTEELL 79 (150)
Q Consensus 5 ~lP~IlV~NKiDl~~~~----~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~ef-y~~l~vv~VSA~TGeGideL~ 79 (150)
+.|+|+|+||+|+.+.+ ...+|+..+ .. +. +...+++.|||++|.|+++|+
T Consensus 96 ~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~------~~------------------~~g~~~~~v~~iSA~~g~gi~~L~ 151 (368)
T 3h2y_A 96 NNKVLLVGNKADLIPKSVKHDKVKHWMRYS------AK------------------QLGLKPEDVFLISAAKGQGIAELA 151 (368)
T ss_dssp SSCEEEEEECGGGSCTTSCHHHHHHHHHHH------HH------------------HTTCCCSEEEECCTTTCTTHHHHH
T ss_pred CCcEEEEEEChhcCCcccCHHHHHHHHHHH------HH------------------HcCCCcccEEEEeCCCCcCHHHHH
Confidence 67999999999997654 223444211 00 10 112378999999999999999
Q ss_pred HHHHHH
Q psy7275 80 QLIKLA 85 (150)
Q Consensus 80 ~~I~e~ 85 (150)
+.|.+.
T Consensus 152 ~~l~~~ 157 (368)
T 3h2y_A 152 DAIEYY 157 (368)
T ss_dssp HHHHHH
T ss_pred hhhhhh
Confidence 998764
No 111
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=98.03 E-value=5.2e-06 Score=63.51 Aligned_cols=60 Identities=10% Similarity=0.003 Sum_probs=38.3
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK 83 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~ 83 (150)
.++|+|+|+||+|+.+..... .+..... ... .+++++.+||++|+|+++++..|.
T Consensus 117 ~~~piilv~nK~Dl~~~~~v~-----~~~~~~~------------------~~~--~~~~~~~~Sa~~~~gi~~l~~~l~ 171 (223)
T 3cpj_B 117 DNVAVGLIGNKSDLAHLRAVP-----TEESKTF------------------AQE--NQLLFTETSALNSENVDKAFEELI 171 (223)
T ss_dssp --CEEEEEECCGGGGGGCCSC-----HHHHHHH------------------HHH--TTCEEEECCCC-CCCHHHHHHHHH
T ss_pred CCCeEEEEEECcccccccccC-----HHHHHHH------------------HHH--cCCEEEEEeCCCCCCHHHHHHHHH
Confidence 368999999999986432210 0000000 011 246899999999999999999998
Q ss_pred HHHHH
Q psy7275 84 LAGED 88 (150)
Q Consensus 84 e~~~e 88 (150)
+.+.+
T Consensus 172 ~~i~~ 176 (223)
T 3cpj_B 172 NTIYQ 176 (223)
T ss_dssp HHHTT
T ss_pred HHHHH
Confidence 77643
No 112
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=98.03 E-value=4.3e-06 Score=62.57 Aligned_cols=66 Identities=21% Similarity=0.124 Sum_probs=38.8
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK 83 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~ 83 (150)
.+.|+|+|+||+|+.+... .+.+.+.+..... ..... + .-....+++.+||++|+|++++++.|.
T Consensus 123 ~~~piilv~NK~Dl~~~~~-------~~~~~~~~~~~~~----~~~~~---~-~~~~~~~~~~~Sa~~g~gi~~l~~~l~ 187 (190)
T 1m2o_B 123 KDVPFVILGNKIDAPNAVS-------EAELRSALGLLNT----TGSQR---I-EGQRPVEVFMCSVVMRNGYLEAFQWLS 187 (190)
T ss_dssp TTCCEEEEEECTTSTTCCC-------HHHHHHHTTCSSC----CC------C-CSSCCEEEEECBTTTTBSHHHHHHHHH
T ss_pred cCCCEEEEEECCCCcCCCC-------HHHHHHHhCCccc----ccccc---c-cccceEEEEEeECCcCCCHHHHHHHHH
Confidence 4789999999999975221 1112222210000 00000 0 001245899999999999999999886
Q ss_pred H
Q psy7275 84 L 84 (150)
Q Consensus 84 e 84 (150)
+
T Consensus 188 ~ 188 (190)
T 1m2o_B 188 Q 188 (190)
T ss_dssp T
T ss_pred h
Confidence 4
No 113
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=98.02 E-value=4.6e-06 Score=59.29 Aligned_cols=53 Identities=23% Similarity=0.234 Sum_probs=37.1
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK 83 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~ 83 (150)
.+.|+|+|+||+|+.+... .+.++ . + +...+++.+||++|.|++++++.|.
T Consensus 107 ~~~p~ilv~nK~Dl~~~~~---~~~~~------------------------~-~-~~~~~~~~~Sa~~~~gv~~l~~~l~ 157 (161)
T 2dyk_A 107 KGKPVILVATKVDDPKHEL---YLGPL------------------------Y-G-LGFGDPIPTSSEHARGLEELLEAIW 157 (161)
T ss_dssp HTCCEEEEEECCCSGGGGG---GCGGG------------------------G-G-GSSCSCEECBTTTTBSHHHHHHHHH
T ss_pred cCCCEEEEEECcccccchH---hHHHH------------------------H-h-CCCCCeEEEecccCCChHHHHHHHH
Confidence 3689999999999865421 11000 0 1 1112789999999999999999987
Q ss_pred HH
Q psy7275 84 LA 85 (150)
Q Consensus 84 e~ 85 (150)
+.
T Consensus 158 ~~ 159 (161)
T 2dyk_A 158 ER 159 (161)
T ss_dssp HH
T ss_pred Hh
Confidence 64
No 114
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=98.02 E-value=5.4e-06 Score=62.14 Aligned_cols=59 Identities=15% Similarity=0.073 Sum_probs=39.7
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhh--cCCcEEEeecCCCCCHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFY--STLKVVGFSSVSGEGTEELLQL 81 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy--~~l~vv~VSA~TGeGideL~~~ 81 (150)
.+.|+|+|+||+|+.+.....+ +.+.+.. .+. ...+++.+||++|.|++++++.
T Consensus 129 ~~~piilv~NK~Dl~~~~~~~~-------i~~~~~~-----------------~~~~~~~~~~~~~SA~~g~gi~~l~~~ 184 (192)
T 2b6h_A 129 RDAVLLVFANKQDMPNAMPVSE-------LTDKLGL-----------------QHLRSRTWYVQATCATQGTGLYDGLDW 184 (192)
T ss_dssp TTCEEEEEEECTTSTTCCCHHH-------HHHHTTG-----------------GGCSSCCEEEEECBTTTTBTHHHHHHH
T ss_pred CCCeEEEEEECCCCCCCCCHHH-------HHHHhCc-----------------ccccCCceEEEECcCCCcCCHHHHHHH
Confidence 3689999999999976432111 1111110 011 1347899999999999999999
Q ss_pred HHHHH
Q psy7275 82 IKLAG 86 (150)
Q Consensus 82 I~e~~ 86 (150)
|.+.+
T Consensus 185 l~~~i 189 (192)
T 2b6h_A 185 LSHEL 189 (192)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 87654
No 115
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=98.02 E-value=1.4e-05 Score=68.30 Aligned_cols=70 Identities=17% Similarity=0.227 Sum_probs=46.7
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK 83 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~ 83 (150)
.+.|+|+|+||+|+.+..... ++.+.+.+.. .+ .+....+++++||+||.|+++++..+.
T Consensus 285 ~~~~iiiv~NK~Dl~~~~~~~-----~~~~~~~~~~----------~l-----~~~~~~~~~~~SA~tg~~v~~l~~~i~ 344 (436)
T 2hjg_A 285 AGKAVVIVVNKWDAVDKDEST-----MKEFEENIRD----------HF-----QFLDYAPILFMSALTKKRIHTLMPAII 344 (436)
T ss_dssp TTCEEEEEEECGGGSCCCTTH-----HHHHHHHHHH----------HC-----GGGTTSCEEECCTTTCTTGGGHHHHHH
T ss_pred cCCcEEEEEECccCCCcchHH-----HHHHHHHHHH----------hc-----ccCCCCCEEEEecccCCCHHHHHHHHH
Confidence 468999999999997643310 1111111110 00 122357999999999999999999999
Q ss_pred HHHHHHHhhh
Q psy7275 84 LAGEDYEKNY 93 (150)
Q Consensus 84 e~~~ey~~~y 93 (150)
+...++....
T Consensus 345 ~~~~~~~~~~ 354 (436)
T 2hjg_A 345 KASENHSLRV 354 (436)
T ss_dssp HHHHHHTCCC
T ss_pred HHHHHhhcCC
Confidence 8887765443
No 116
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=98.00 E-value=1e-05 Score=60.50 Aligned_cols=26 Identities=12% Similarity=-0.034 Sum_probs=23.1
Q ss_pred CCcEEEeecCCCCCHHHHHHHHHHHH
Q psy7275 61 TLKVVGFSSVSGEGTEELLQLIKLAG 86 (150)
Q Consensus 61 ~l~vv~VSA~TGeGideL~~~I~e~~ 86 (150)
+.+++.+||++|.|+++++..|.+.+
T Consensus 170 ~~~~~~~SA~~g~gv~el~~~l~~~i 195 (199)
T 2p5s_A 170 GALFCETSAKDGSNIVEAVLHLAREV 195 (199)
T ss_dssp TCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CCeEEEeeCCCCCCHHHHHHHHHHHH
Confidence 46899999999999999999987765
No 117
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.00 E-value=4e-06 Score=71.11 Aligned_cols=60 Identities=20% Similarity=0.184 Sum_probs=33.7
Q ss_pred CEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHHHH
Q psy7275 7 PYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKLAG 86 (150)
Q Consensus 7 P~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e~~ 86 (150)
|+|+|+||+|+.+.+...+. ++.+.+.+.. .+....+++++||++|+|+++|++.|.+.+
T Consensus 137 ~iivv~NK~Dl~~~~~~~~~---~~~i~~~l~~-----------------~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i 196 (408)
T 1s0u_A 137 KIIIVQNKIDLVDEKQAEEN---YEQIKEFVKG-----------------TIAENAPIIPISAHHEANIDVLLKAIQDFI 196 (408)
T ss_dssp CEEEEEECTTSSCTTTTTTH---HHHHHHHHTT-----------------STTTTCCEEEC------CHHHHHHHHHHHS
T ss_pred eEEEEEEccCCCCHHHHHHH---HHHHHHHHhh-----------------cCCCCCeEEEeeCCCCCCHHHHHHHHHHhC
Confidence 79999999999875432111 1222221110 012357999999999999999999987643
No 118
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=97.99 E-value=5.4e-06 Score=61.03 Aligned_cols=58 Identities=12% Similarity=0.090 Sum_probs=38.2
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHh-hcCCcEEEeecCCCCCHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEF-YSTLKVVGFSSVSGEGTEELLQLI 82 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~ef-y~~l~vv~VSA~TGeGideL~~~I 82 (150)
.++|+|+|+||+|+.+.....+ +.+.+.. ..+ ....+++.+||++|.|++++++.|
T Consensus 121 ~~~piilv~NK~Dl~~~~~~~~-------i~~~~~~----------------~~~~~~~~~~~~~Sa~~g~gi~~l~~~l 177 (181)
T 2h17_A 121 RKAGLLIFANKQDVKECMTVAE-------ISQFLKL----------------TSIKDHQWHIQACCALTGEGLCQGLEWM 177 (181)
T ss_dssp TTCEEEEEEECTTSTTCCCHHH-------HHHHTTG----------------GGCCSSCEEEEECBTTTTBTHHHHHHHH
T ss_pred CCCeEEEEEECCCcccCCCHHH-------HHHHhCc----------------ccccCCceEEEEccCCCCcCHHHHHHHH
Confidence 5789999999999976422111 1111110 000 123488999999999999999988
Q ss_pred HH
Q psy7275 83 KL 84 (150)
Q Consensus 83 ~e 84 (150)
.+
T Consensus 178 ~~ 179 (181)
T 2h17_A 178 MS 179 (181)
T ss_dssp HT
T ss_pred Hh
Confidence 64
No 119
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.98 E-value=1.2e-05 Score=68.73 Aligned_cols=70 Identities=16% Similarity=0.242 Sum_probs=46.7
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK 83 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~ 83 (150)
.+.|+|+|+||+|+.+.+.. ..+.+.+.+.. .+ .+....+++.+||++|.|+++|++.|.
T Consensus 291 ~~~~~ilv~NK~Dl~~~~~~-----~~~~~~~~~~~----------~~-----~~~~~~~~~~~SA~~g~gv~~l~~~i~ 350 (439)
T 1mky_A 291 RGRASVVVFNKWDLVVHREK-----RYDEFTKLFRE----------KL-----YFIDYSPLIFTSADKGWNIDRMIDAMN 350 (439)
T ss_dssp TTCEEEEEEECGGGSTTGGG-----CHHHHHHHHHH----------HC-----GGGTTSCEEECBTTTTBSHHHHHHHHH
T ss_pred cCCCEEEEEECccCCCchhh-----HHHHHHHHHHH----------Hh-----ccCCCCcEEEEECCCCCCHHHHHHHHH
Confidence 57899999999998764321 11111122210 00 122356899999999999999999999
Q ss_pred HHHHHHHhhh
Q psy7275 84 LAGEDYEKNY 93 (150)
Q Consensus 84 e~~~ey~~~y 93 (150)
+...++....
T Consensus 351 ~~~~~~~~~i 360 (439)
T 1mky_A 351 LAYASYTTKV 360 (439)
T ss_dssp HHHHHHTCCC
T ss_pred HHHHhhcccC
Confidence 8887765433
No 120
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=97.98 E-value=9e-06 Score=64.88 Aligned_cols=70 Identities=13% Similarity=0.095 Sum_probs=40.6
Q ss_pred CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHH
Q psy7275 5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKL 84 (150)
Q Consensus 5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e 84 (150)
++|+|+|+||+|+.+.....+++.+. ...... ...... +.+.+...+++.|||++|.|+++++..|.+
T Consensus 259 ~~p~ilv~nK~Dl~~~~~~~~~~~~~------~~~~v~--~~~~~~----~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 326 (332)
T 2wkq_A 259 NTPIILVGTKLDLRDDKDTIEKLKEK------KLTPIT--YPQGLA----MAKEIGAVKYLECSALTQRGLKTVFDEAIR 326 (332)
T ss_dssp TSCEEEEEECHHHHTCHHHHHHHHHT------TCCCCC--HHHHHH----HHHHTTCSEEEECCTTTCTTHHHHHHHHHH
T ss_pred CCcEEEEEEchhcccccchhhhcccc------cccccc--HHHHHH----HHHHcCCcEEEEecCCCCcCHHHHHHHHHH
Confidence 78999999999986554322211100 000000 000000 111122248999999999999999999887
Q ss_pred HH
Q psy7275 85 AG 86 (150)
Q Consensus 85 ~~ 86 (150)
.+
T Consensus 327 ~~ 328 (332)
T 2wkq_A 327 AV 328 (332)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 121
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=97.98 E-value=1.1e-06 Score=74.01 Aligned_cols=61 Identities=25% Similarity=0.281 Sum_probs=42.9
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK 83 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~ 83 (150)
.++|+|+|+||+|+.+... ..+.+.+ .+....+++.|||++|+|+++|+..|.
T Consensus 273 ~~~p~ilV~NK~Dl~~~~e------~~~~l~~---------------------~l~~~~~v~~iSA~tg~gi~eL~~~l~ 325 (342)
T 1lnz_A 273 TERPQIIVANKMDMPEAAE------NLEAFKE---------------------KLTDDYPVFPISAVTREGLRELLFEVA 325 (342)
T ss_dssp TTSCBCBEEECTTSTTHHH------HHHHHHH---------------------HCCSCCCBCCCSSCCSSTTHHHHHHHH
T ss_pred cCCCEEEEEECccCCCCHH------HHHHHHH---------------------HhhcCCCEEEEECCCCcCHHHHHHHHH
Confidence 4789999999999875331 1111111 111125889999999999999999999
Q ss_pred HHHHHHHh
Q psy7275 84 LAGEDYEK 91 (150)
Q Consensus 84 e~~~ey~~ 91 (150)
+.+.+...
T Consensus 326 ~~l~~~~~ 333 (342)
T 1lnz_A 326 NQLENTPE 333 (342)
T ss_dssp HHHTSCCC
T ss_pred HHHhhCcc
Confidence 88865443
No 122
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=97.97 E-value=4.7e-06 Score=63.40 Aligned_cols=57 Identities=19% Similarity=0.170 Sum_probs=40.8
Q ss_pred CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHH
Q psy7275 5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKL 84 (150)
Q Consensus 5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e 84 (150)
++|+|+|+||+|+.+.....+.. .+. . . .+++++.+||++|.|+++++..|.+
T Consensus 119 ~~p~ilv~nK~Dl~~~~~~~~~~----~~~--------------~-------~--~~~~~~~~Sa~~~~gi~~l~~~l~~ 171 (221)
T 3gj0_A 119 NIPIVLCGNKVDIKDRKVKAKSI----VFH--------------R-------K--KNLQYYDISAKSNYNFEKPFLWLAR 171 (221)
T ss_dssp TCCEEEEEECTTSSSCSSCGGGC----CHH--------------H-------H--HTCEEEECBGGGTBTTTHHHHHHHH
T ss_pred CCCEEEEEECCccccccccHHHH----HHH--------------H-------H--cCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 78999999999997543211100 000 0 1 1468999999999999999999988
Q ss_pred HHHH
Q psy7275 85 AGED 88 (150)
Q Consensus 85 ~~~e 88 (150)
.+..
T Consensus 172 ~l~~ 175 (221)
T 3gj0_A 172 KLIG 175 (221)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 7743
No 123
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=97.97 E-value=7.2e-06 Score=65.03 Aligned_cols=57 Identities=18% Similarity=0.075 Sum_probs=39.1
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK 83 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~ 83 (150)
.++|+|+|.||+|+.+.... ++. .+.. .+ ..+.+++.+||++|.|+++++..|.
T Consensus 197 ~~~piilV~NK~Dl~~~~~v----~~~---~~~~------------------~~-~~~~~~~e~SAk~g~gv~elf~~l~ 250 (255)
T 3c5h_A 197 TKKPIVVVLTKCDEGVERYI----RDA---HTFA------------------LS-KKNLQVVETSARSNVNVDLAFSTLV 250 (255)
T ss_dssp TTCCEEEEEECGGGBCHHHH----HHH---HHHH------------------HT-SSSCCEEECBTTTTBSHHHHHHHHH
T ss_pred CCCCEEEEEEcccccccHHH----HHH---HHHH------------------Hh-cCCCeEEEEECCCCCCHHHHHHHHH
Confidence 36899999999998543221 000 0000 01 1246899999999999999999997
Q ss_pred HHH
Q psy7275 84 LAG 86 (150)
Q Consensus 84 e~~ 86 (150)
+.+
T Consensus 251 ~~l 253 (255)
T 3c5h_A 251 QLI 253 (255)
T ss_dssp HHH
T ss_pred HHh
Confidence 765
No 124
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.97 E-value=4.1e-05 Score=63.97 Aligned_cols=28 Identities=32% Similarity=0.343 Sum_probs=24.9
Q ss_pred CcEEEeecCCCCCHHHHHHHHHHHHHHH
Q psy7275 62 LKVVGFSSVSGEGTEELLQLIKLAGEDY 89 (150)
Q Consensus 62 l~vv~VSA~TGeGideL~~~I~e~~~ey 89 (150)
.+++++||++|+|+++|++.|.+...++
T Consensus 253 ~~vi~iSA~~g~Gi~~L~~~I~~~~~~~ 280 (349)
T 2www_A 253 PKVIRISARSGEGISEMWDKMKDFQDLM 280 (349)
T ss_dssp CEEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred ceEEEEecCCCCCHHHHHHHHHHHHHHH
Confidence 5789999999999999999999987653
No 125
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.97 E-value=7e-06 Score=67.12 Aligned_cols=55 Identities=24% Similarity=0.298 Sum_probs=37.4
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcC-CcEEEeecCCCCCHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYST-LKVVGFSSVSGEGTEELLQLI 82 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~-l~vv~VSA~TGeGideL~~~I 82 (150)
.++|+|+|+||+|+.+.... + ...+.+ +.|.. .+++.+||++|.|+++++..+
T Consensus 114 ~~~piilv~NK~DL~~~~~v-~------~~~~~~-------------------~~~~~~~~~~~~SAktg~gv~~lf~~l 167 (301)
T 1u0l_A 114 NELETVMVINKMDLYDEDDL-R------KVRELE-------------------EIYSGLYPIVKTSAKTGMGIEELKEYL 167 (301)
T ss_dssp TTCEEEEEECCGGGCCHHHH-H------HHHHHH-------------------HHHTTTSCEEECCTTTCTTHHHHHHHH
T ss_pred CCCCEEEEEeHHHcCCchhH-H------HHHHHH-------------------HHHhhhCcEEEEECCCCcCHHHHHHHh
Confidence 36899999999999764321 0 011111 11222 589999999999999999887
Q ss_pred HH
Q psy7275 83 KL 84 (150)
Q Consensus 83 ~e 84 (150)
..
T Consensus 168 ~g 169 (301)
T 1u0l_A 168 KG 169 (301)
T ss_dssp SS
T ss_pred cC
Confidence 54
No 126
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=97.96 E-value=1.1e-05 Score=59.63 Aligned_cols=58 Identities=10% Similarity=0.096 Sum_probs=37.6
Q ss_pred CCCCCEEEeeecCCCCCchhh-HHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCC---CCHHHH
Q psy7275 3 DTGFPYTELVVGIDIVNHKYA-IEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSG---EGTEEL 78 (150)
Q Consensus 3 k~~lP~IlV~NKiDl~~~~~~-~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TG---eGideL 78 (150)
..++|+|+|+||+|+.+.... .+.. . .+ . .. .+++++.+||++| .|++++
T Consensus 125 ~~~~piilv~nK~Dl~~~~~v~~~~~------~-~~----------~-------~~--~~~~~~~~Sa~~~~~~~~i~~l 178 (189)
T 1z06_A 125 ANDIPRILVGNKCDLRSAIQVPTDLA------Q-KF----------A-------DT--HSMPLFETSAKNPNDNDHVEAI 178 (189)
T ss_dssp CSCCCEEEEEECTTCGGGCCSCHHHH------H-HH----------H-------HH--TTCCEEECCSSSGGGGSCHHHH
T ss_pred CCCCCEEEEEECccccccceeCHHHH------H-HH----------H-------HH--cCCEEEEEeCCcCCcccCHHHH
Confidence 457899999999998643221 1100 0 00 0 01 2468999999999 999999
Q ss_pred HHHHHHHH
Q psy7275 79 LQLIKLAG 86 (150)
Q Consensus 79 ~~~I~e~~ 86 (150)
+..|.+.+
T Consensus 179 ~~~l~~~i 186 (189)
T 1z06_A 179 FMTLAHKL 186 (189)
T ss_dssp HHHHC---
T ss_pred HHHHHHHH
Confidence 99987654
No 127
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=97.95 E-value=5.7e-06 Score=61.63 Aligned_cols=58 Identities=12% Similarity=0.044 Sum_probs=39.1
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeec-CCCCCHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSS-VSGEGTEELLQLI 82 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA-~TGeGideL~~~I 82 (150)
.++|+|+|+||+|+.+.... ..+...+ +. .++ +++++.+|| ++|.|++++++.|
T Consensus 126 ~~~piilv~nK~Dl~~~~~v-----~~~~~~~-----------~~-------~~~--~~~~~e~Sa~~~g~gv~~lf~~l 180 (187)
T 3c5c_A 126 RSIPALLLGNKLDMAQYRQV-----TKAEGVA-----------LA-------GRF--GCLFFEVSACLDFEHVQHVFHEA 180 (187)
T ss_dssp CCCCEEEEEECGGGGGGCSS-----CHHHHHH-----------HH-------HHH--TCEEEECCSSSCSHHHHHHHHHH
T ss_pred CCCCEEEEEECcchhhcCcc-----CHHHHHH-----------HH-------HHc--CCcEEEEeecCccccHHHHHHHH
Confidence 47899999999998543211 0110011 00 111 468999999 8999999999998
Q ss_pred HHHH
Q psy7275 83 KLAG 86 (150)
Q Consensus 83 ~e~~ 86 (150)
.+.+
T Consensus 181 ~~~i 184 (187)
T 3c5c_A 181 VREA 184 (187)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8765
No 128
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=97.95 E-value=8.9e-06 Score=67.26 Aligned_cols=61 Identities=18% Similarity=0.070 Sum_probs=41.0
Q ss_pred CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHH
Q psy7275 5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKL 84 (150)
Q Consensus 5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e 84 (150)
++|+|+|+||+|+.+.....+ +...+.... -.....+++.|||++|.|++++++.|.+
T Consensus 266 ~~piilV~NK~Dl~~~~~~~~-------i~~~~~~~~---------------~~~~~~~~~~vSAk~g~gi~el~~~l~~ 323 (329)
T 3o47_A 266 DAVLLVFANKQDLPNAMNAAE-------ITDKLGLHS---------------LRHRNWYIQATCATSGDGLYEGLDWLSN 323 (329)
T ss_dssp TCEEEEEEECTTSTTCCCHHH-------HHHHHTCTT---------------CCSSCEEEEECBTTTTBTHHHHHHHHHH
T ss_pred CCeEEEEEECccCCcccCHHH-------HHHHhchhh---------------hhcCCCEEEEEECCCCcCHHHHHHHHHH
Confidence 789999999999976543221 112111000 0012357999999999999999999987
Q ss_pred HHH
Q psy7275 85 AGE 87 (150)
Q Consensus 85 ~~~ 87 (150)
.+.
T Consensus 324 ~l~ 326 (329)
T 3o47_A 324 QLR 326 (329)
T ss_dssp HHT
T ss_pred HHH
Confidence 653
No 129
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=97.94 E-value=4.9e-06 Score=71.61 Aligned_cols=66 Identities=15% Similarity=-0.021 Sum_probs=41.2
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK 83 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~ 83 (150)
.++|+|+|+||+|+.+.... +.+...+.... ......+++.+||++|+|++++++.|.
T Consensus 422 ~~~p~ilv~NK~Dl~~~~~~-------~~~~~~~~~~~---------------~~~~~~~~~~~SA~~g~gi~~l~~~l~ 479 (497)
T 3lvq_E 422 RDAIILIFANKQDLPDAMKP-------HEIQEKLGLTR---------------IRDRNWYVQPSCATSGDGLYEGLTWLT 479 (497)
T ss_dssp TTCEEEEEEECCSSSSCCCH-------HHHHHHTTCTT---------------CCSSCEEEEECBTTTTBTHHHHHHHHH
T ss_pred CCCcEEEEEECCCCCcCCCH-------HHHHHHhchhh---------------hhcCCeEEEEEECCCCCCHHHHHHHHH
Confidence 36899999999999754321 11111111000 001234799999999999999999999
Q ss_pred HHHHHHHh
Q psy7275 84 LAGEDYEK 91 (150)
Q Consensus 84 e~~~ey~~ 91 (150)
+.+..+..
T Consensus 480 ~~~~~~~~ 487 (497)
T 3lvq_E 480 SNYKSKLA 487 (497)
T ss_dssp HHCC----
T ss_pred HHHHhcCC
Confidence 88755443
No 130
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=97.94 E-value=6.3e-06 Score=69.82 Aligned_cols=60 Identities=17% Similarity=0.217 Sum_probs=39.4
Q ss_pred CEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHHHH
Q psy7275 7 PYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKLAG 86 (150)
Q Consensus 7 P~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e~~ 86 (150)
|+|+|+||+|+.+.+...+. ++.+.+.+.. .+....+++++||++|.|+++|++.|.+.+
T Consensus 139 ~iivviNK~Dl~~~~~~~~~---~~~i~~~l~~-----------------~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~ 198 (410)
T 1kk1_A 139 NIIIAQNKIELVDKEKALEN---YRQIKEFIEG-----------------TVAENAPIIPISALHGANIDVLVKAIEDFI 198 (410)
T ss_dssp CEEEEEECGGGSCHHHHHHH---HHHHHHHHTT-----------------STTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred cEEEEEECccCCCHHHHHHH---HHHHHHHHHh-----------------cCcCCCeEEEeeCCCCCCHHHHHHHHHHhC
Confidence 79999999999875432111 1111111110 012357999999999999999999887643
No 131
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.94 E-value=2.5e-06 Score=63.04 Aligned_cols=51 Identities=22% Similarity=0.263 Sum_probs=37.2
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK 83 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~ 83 (150)
.++|+|+|+||+|+.+... +|. + ....+++.+||++|+|+++++..|.
T Consensus 114 ~~~p~ilv~NK~Dl~~~~~--~~~-----------------------------~-~~~~~~~~~SA~~g~gv~~l~~~l~ 161 (172)
T 2gj8_A 114 AKLPITVVRNKADITGETL--GMS-----------------------------E-VNGHALIRLSARTGEGVDVLRNHLK 161 (172)
T ss_dssp TTCCEEEEEECHHHHCCCC--EEE-----------------------------E-ETTEEEEECCTTTCTTHHHHHHHHH
T ss_pred cCCCEEEEEECccCCcchh--hhh-----------------------------h-ccCCceEEEeCCCCCCHHHHHHHHH
Confidence 3689999999999843211 010 0 0135889999999999999999987
Q ss_pred HHH
Q psy7275 84 LAG 86 (150)
Q Consensus 84 e~~ 86 (150)
+.+
T Consensus 162 ~~~ 164 (172)
T 2gj8_A 162 QSM 164 (172)
T ss_dssp HHC
T ss_pred HHh
Confidence 654
No 132
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=97.92 E-value=1.1e-05 Score=68.00 Aligned_cols=58 Identities=19% Similarity=0.313 Sum_probs=39.9
Q ss_pred CCCEEEeeecCCCCCchh----hHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHh-hcCCcEEEeecCCCCCHHHHH
Q psy7275 5 GFPYTELVVGIDIVNHKY----AIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEF-YSTLKVVGFSSVSGEGTEELL 79 (150)
Q Consensus 5 ~lP~IlV~NKiDl~~~~~----~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~ef-y~~l~vv~VSA~TGeGideL~ 79 (150)
+.|+|+|+||+|+.+.+. ..+|+.++ +. +. +...+++.|||++|.|+++|+
T Consensus 98 ~~piilV~NK~DLl~~~~~~~~~~~~l~~~------~~------------------~~g~~~~~v~~iSA~~g~gi~~L~ 153 (369)
T 3ec1_A 98 DNPILLVGNKADLLPRSVKYPKLLRWMRRM------AE------------------ELGLCPVDVCLVSAAKGIGMAKVM 153 (369)
T ss_dssp TSCEEEEEECGGGSCTTCCHHHHHHHHHHH------HH------------------TTTCCCSEEEECBTTTTBTHHHHH
T ss_pred CCCEEEEEEChhcCCCccCHHHHHHHHHHH------HH------------------HcCCCcccEEEEECCCCCCHHHHH
Confidence 579999999999986532 23444211 10 00 112378999999999999999
Q ss_pred HHHHHHH
Q psy7275 80 QLIKLAG 86 (150)
Q Consensus 80 ~~I~e~~ 86 (150)
+.|.+..
T Consensus 154 ~~I~~~~ 160 (369)
T 3ec1_A 154 EAINRYR 160 (369)
T ss_dssp HHHHHHH
T ss_pred HHHHhhc
Confidence 9987653
No 133
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=97.90 E-value=7.8e-06 Score=62.50 Aligned_cols=28 Identities=7% Similarity=0.019 Sum_probs=24.3
Q ss_pred CC-cEEEeecCCCCC-HHHHHHHHHHHHHH
Q psy7275 61 TL-KVVGFSSVSGEG-TEELLQLIKLAGED 88 (150)
Q Consensus 61 ~l-~vv~VSA~TGeG-ideL~~~I~e~~~e 88 (150)
+. +++.|||++|.| +++++..|.+.+.+
T Consensus 174 ~~~~~~e~SA~~g~g~v~~lf~~l~~~~~~ 203 (214)
T 3q3j_B 174 GAEIYLEGSAFTSEKSIHSIFRTASMLCLN 203 (214)
T ss_dssp TCSEEEECCTTTCHHHHHHHHHHHHHHHHC
T ss_pred CCCEEEEeccCCCcccHHHHHHHHHHHHhc
Confidence 35 899999999999 99999999887653
No 134
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=97.87 E-value=7.5e-07 Score=73.22 Aligned_cols=55 Identities=15% Similarity=0.053 Sum_probs=40.6
Q ss_pred CCCEEEeeecCCCCCchh-hHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275 5 GFPYTELVVGIDIVNHKY-AIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK 83 (150)
Q Consensus 5 ~lP~IlV~NKiDl~~~~~-~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~ 83 (150)
+.|+|+|+||+|+.+... ..+ .+. ++....++++|||++|.|+++|++.|.
T Consensus 117 ~~p~ilV~NK~Dl~~~~~~~~~----------~~~------------------~~~~~~~~~~iSA~~g~gv~~l~~~l~ 168 (301)
T 1wf3_A 117 KVPILLVGNKLDAAKYPEEAMK----------AYH------------------ELLPEAEPRMLSALDERQVAELKADLL 168 (301)
T ss_dssp TSCEEEEEECGGGCSSHHHHHH----------HHH------------------HTSTTSEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEEECcccCCchHHHHH----------HHH------------------HhcCcCcEEEEeCCCCCCHHHHHHHHH
Confidence 789999999999976543 111 111 112235789999999999999999998
Q ss_pred HHHH
Q psy7275 84 LAGE 87 (150)
Q Consensus 84 e~~~ 87 (150)
+.+.
T Consensus 169 ~~l~ 172 (301)
T 1wf3_A 169 ALMP 172 (301)
T ss_dssp TTCC
T ss_pred Hhcc
Confidence 8664
No 135
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.82 E-value=3e-06 Score=69.33 Aligned_cols=60 Identities=15% Similarity=0.176 Sum_probs=40.5
Q ss_pred CCCCEEEeeecCCCCCc-hhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNH-KYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLI 82 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~-~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I 82 (150)
.+.|.|+|+||+|+.+. ....+++ +.+. +.+....+++|||++|.|+++|++.|
T Consensus 115 ~~~P~ilvlNK~D~~~~~~~~~~~l-------~~l~------------------~~~~~~~~i~iSA~~g~~v~~l~~~i 169 (301)
T 1ega_A 115 GKAPVILAVNKVDNVQEKADLLPHL-------QFLA------------------SQMNFLDIVPISAETGLNVDTIAAIV 169 (301)
T ss_dssp SSSCEEEEEESTTTCCCHHHHHHHH-------HHHH------------------TTSCCSEEEECCTTTTTTHHHHHHHH
T ss_pred cCCCEEEEEECcccCccHHHHHHHH-------HHHH------------------HhcCcCceEEEECCCCCCHHHHHHHH
Confidence 47899999999999762 2111111 1110 11112378999999999999999999
Q ss_pred HHHHHH
Q psy7275 83 KLAGED 88 (150)
Q Consensus 83 ~e~~~e 88 (150)
...+.+
T Consensus 170 ~~~l~~ 175 (301)
T 1ega_A 170 RKHLPE 175 (301)
T ss_dssp HTTCCB
T ss_pred HHhCCc
Confidence 876543
No 136
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=97.82 E-value=1.9e-05 Score=69.02 Aligned_cols=59 Identities=17% Similarity=0.102 Sum_probs=36.1
Q ss_pred CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHH
Q psy7275 5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKL 84 (150)
Q Consensus 5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e 84 (150)
+.|+|+|+||+|+.+..... .+.+.+... . .+.+++.|||++|.|+++|+..|.+
T Consensus 150 ~~pvilV~NK~Dl~~~~~v~-----~~~~~~~~~------------------~--~~~~~~~vSA~~g~gi~eL~~~l~~ 204 (535)
T 3dpu_A 150 KSPVIVVMNKIDENPSYNIE-----QKKINERFP------------------A--IENRFHRISCKNGDGVESIAKSLKS 204 (535)
T ss_dssp SCCEEEEECCTTTCTTCCCC-----HHHHHHHCG------------------G--GTTCEEECCC-----CTTHHHHHHH
T ss_pred CCCEEEEEECCCcccccccC-----HHHHHHHHH------------------h--cCCceEEEecCcccCHHHHHHHHHH
Confidence 58999999999997543210 111111110 0 1357999999999999999999998
Q ss_pred HHHH
Q psy7275 85 AGED 88 (150)
Q Consensus 85 ~~~e 88 (150)
.+.+
T Consensus 205 ~~~~ 208 (535)
T 3dpu_A 205 AVLH 208 (535)
T ss_dssp HHTC
T ss_pred HHhc
Confidence 8754
No 137
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=97.81 E-value=0.00011 Score=64.41 Aligned_cols=55 Identities=22% Similarity=0.274 Sum_probs=39.1
Q ss_pred CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHH
Q psy7275 5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKL 84 (150)
Q Consensus 5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e 84 (150)
+.|+|+|+||+|+.+... .+.+.+. +....+++.|||++|+|+++|++.|.+
T Consensus 350 ~~piivV~NK~DL~~~~~-------~~~~~~~---------------------~~~~~~~i~iSAktg~Gi~eL~~~l~~ 401 (482)
T 1xzp_A 350 NKRYLVVINKVDVVEKIN-------EEEIKNK---------------------LGTDRHMVKISALKGEGLEKLEESIYR 401 (482)
T ss_dssp TSSEEEEEEECSSCCCCC-------HHHHHHH---------------------HTCSTTEEEEEGGGTCCHHHHHHHHHH
T ss_pred CCCEEEEEECcccccccC-------HHHHHHH---------------------hcCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 579999999999965311 1111110 011358999999999999999999988
Q ss_pred HHH
Q psy7275 85 AGE 87 (150)
Q Consensus 85 ~~~ 87 (150)
.+.
T Consensus 402 ~~~ 404 (482)
T 1xzp_A 402 ETQ 404 (482)
T ss_dssp HTH
T ss_pred HHh
Confidence 654
No 138
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.80 E-value=1.2e-05 Score=64.92 Aligned_cols=53 Identities=17% Similarity=0.113 Sum_probs=38.6
Q ss_pred CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHH
Q psy7275 5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKL 84 (150)
Q Consensus 5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e 84 (150)
++|.|+|+||+|+.+.+....|.+-++ + .+.++ .+||.+|.|+++|+..+.+
T Consensus 46 ~k~~iivlNK~DL~~~~~~~~~~~~~~-------------------------~--~g~~v-~iSa~~~~gi~~L~~~l~~ 97 (262)
T 3cnl_A 46 RKETIILLNKVDIADEKTTKKWVEFFK-------------------------K--QGKRV-ITTHKGEPRKVLLKKLSFD 97 (262)
T ss_dssp TSEEEEEEECGGGSCHHHHHHHHHHHH-------------------------H--TTCCE-EECCTTSCHHHHHHHHCCC
T ss_pred CCCcEEEEECccCCCHHHHHHHHHHHH-------------------------H--cCCeE-EEECCCCcCHHHHHHHHHH
Confidence 679999999999988655556653221 0 13567 8999999999988887755
Q ss_pred H
Q psy7275 85 A 85 (150)
Q Consensus 85 ~ 85 (150)
.
T Consensus 98 ~ 98 (262)
T 3cnl_A 98 R 98 (262)
T ss_dssp T
T ss_pred h
Confidence 3
No 139
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=97.78 E-value=2.4e-05 Score=57.64 Aligned_cols=26 Identities=15% Similarity=0.287 Sum_probs=22.6
Q ss_pred CCcEEEeecC-CCCCHHHHHHHHHHHH
Q psy7275 61 TLKVVGFSSV-SGEGTEELLQLIKLAG 86 (150)
Q Consensus 61 ~l~vv~VSA~-TGeGideL~~~I~e~~ 86 (150)
..+++.+||+ +|.|+++++..|.+.+
T Consensus 155 ~~~~~e~Sa~~~~~gi~~l~~~i~~~~ 181 (184)
T 1m7b_A 155 AATYIECSALQSENSVRDIFHVATLAC 181 (184)
T ss_dssp CSEEEECBTTTBHHHHHHHHHHHHHHH
T ss_pred CcEEEEeeecCCCcCHHHHHHHHHHHH
Confidence 3689999999 6999999999988764
No 140
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.76 E-value=2.5e-05 Score=66.48 Aligned_cols=51 Identities=18% Similarity=0.154 Sum_probs=33.1
Q ss_pred CCCCEEEeeecCCCCCchh---hHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKY---AIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQ 80 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~---~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~ 80 (150)
.++|.|+|+||+|+.+.+. ..+|+..|. . .+++++.|||.+|.|+++|..
T Consensus 159 ~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~----~-----------------------~G~~v~~~Sa~~~~gl~~L~~ 211 (358)
T 2rcn_A 159 LQVEPLIVLNKIDLLDDEGMDFVNEQMDIYR----N-----------------------IGYRVLMVSSHTQDGLKPLEE 211 (358)
T ss_dssp HTCEEEEEEECGGGCCHHHHHHHHHHHHHHH----T-----------------------TTCCEEECBTTTTBTHHHHHH
T ss_pred cCCCEEEEEECccCCCchhHHHHHHHHHHHH----h-----------------------CCCcEEEEecCCCcCHHHHHH
Confidence 5789999999999987653 234553221 1 134677777777777766654
Q ss_pred H
Q psy7275 81 L 81 (150)
Q Consensus 81 ~ 81 (150)
.
T Consensus 212 ~ 212 (358)
T 2rcn_A 212 A 212 (358)
T ss_dssp H
T ss_pred h
Confidence 3
No 141
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=97.75 E-value=0.00028 Score=58.75 Aligned_cols=28 Identities=25% Similarity=0.304 Sum_probs=25.0
Q ss_pred CcEEEeecCCCCCHHHHHHHHHHHHHHH
Q psy7275 62 LKVVGFSSVSGEGTEELLQLIKLAGEDY 89 (150)
Q Consensus 62 l~vv~VSA~TGeGideL~~~I~e~~~ey 89 (150)
.+++.+||++|.|+++|++.|.+....+
T Consensus 235 ~~vl~~Sal~g~gi~~L~~~I~~~~~~~ 262 (337)
T 2qm8_A 235 PPVVTISGLHGKGLDSLWSRIEDHRSKL 262 (337)
T ss_dssp CCEEEEBTTTTBSHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 5789999999999999999999987644
No 142
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=97.75 E-value=3e-06 Score=63.46 Aligned_cols=58 Identities=10% Similarity=0.008 Sum_probs=33.6
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK 83 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~ 83 (150)
.++|+|+|+||+|+.+...... .+...+. .. .+++++.+||++|.|+++++..|.
T Consensus 137 ~~~p~ilv~nK~Dl~~~~~v~~--~~~~~~~---------------------~~--~~~~~~~vSA~~g~gv~~l~~~l~ 191 (199)
T 3l0i_B 137 ENVNKLLVGNKCDLTTKKVVDY--TTAKEFA---------------------DS--LGIPFLETSAKNATNVEQSFMTMA 191 (199)
T ss_dssp CCSEEEEC-CCSSCC--CCCCS--CC-CHHH---------------------HT--TTCCBCCCCC---HHHHHHHHHHT
T ss_pred CCCCEEEEEECccCCccccCCH--HHHHHHH---------------------HH--cCCeEEEEECCCCCCHHHHHHHHH
Confidence 3689999999999965432100 0000000 01 146889999999999999999987
Q ss_pred HHH
Q psy7275 84 LAG 86 (150)
Q Consensus 84 e~~ 86 (150)
+.+
T Consensus 192 ~~l 194 (199)
T 3l0i_B 192 AEI 194 (199)
T ss_dssp TTT
T ss_pred HHH
Confidence 654
No 143
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=97.74 E-value=4.2e-05 Score=64.57 Aligned_cols=64 Identities=20% Similarity=0.191 Sum_probs=41.7
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHh-hcCCcEEEeecCCCCCHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEF-YSTLKVVGFSSVSGEGTEELLQLI 82 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~ef-y~~l~vv~VSA~TGeGideL~~~I 82 (150)
.+.|+|+|+||+|+.+... ......... + ...+ ....++++|||++|+|+++|++.|
T Consensus 291 ~~~p~ilV~NK~Dl~~~~~-~~~~~~~~~--------------l-------~~~l~~~~~~~~~~SA~~g~gi~~L~~~I 348 (364)
T 2qtf_A 291 SGKPILVTLNKIDKINGDL-YKKLDLVEK--------------L-------SKELYSPIFDVIPISALKRTNLELLRDKI 348 (364)
T ss_dssp CSCCEEEEEECGGGCCSCH-HHHHHHHHH--------------H-------HHHHCSCEEEEEECBTTTTBSHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCchH-HHHHHHHHH--------------H-------HHHhcCCCCcEEEEECCCCcCHHHHHHHH
Confidence 3579999999999976431 111100000 0 0112 123467999999999999999999
Q ss_pred HHHHHHH
Q psy7275 83 KLAGEDY 89 (150)
Q Consensus 83 ~e~~~ey 89 (150)
.+.+...
T Consensus 349 ~~~l~~~ 355 (364)
T 2qtf_A 349 YQLATQL 355 (364)
T ss_dssp HHHHHHH
T ss_pred HHHhccc
Confidence 8877543
No 144
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=97.74 E-value=3.5e-05 Score=67.47 Aligned_cols=55 Identities=18% Similarity=0.288 Sum_probs=40.6
Q ss_pred CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHH
Q psy7275 5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKL 84 (150)
Q Consensus 5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e 84 (150)
+.|+|+|+||+|+.+..... . +.+. +. ...+++.|||++|+|+++|++.|.+
T Consensus 343 ~~piIvV~NK~Dl~~~~~~~-----~----~~l~------------------~~-~~~~~i~vSAktg~GI~eL~~~i~~ 394 (476)
T 3gee_A 343 AAKFLTVANKLDRAANADAL-----I----RAIA------------------DG-TGTEVIGISALNGDGIDTLKQHMGD 394 (476)
T ss_dssp TSEEEEEEECTTSCTTTHHH-----H----HHHH------------------HH-HTSCEEECBTTTTBSHHHHHHHHTH
T ss_pred CCCEEEEEECcCCCCccchh-----H----HHHH------------------hc-CCCceEEEEECCCCCHHHHHHHHHH
Confidence 57999999999997654321 0 1111 10 1258999999999999999999998
Q ss_pred HHH
Q psy7275 85 AGE 87 (150)
Q Consensus 85 ~~~ 87 (150)
.+.
T Consensus 395 ~~~ 397 (476)
T 3gee_A 395 LVK 397 (476)
T ss_dssp HHH
T ss_pred HHh
Confidence 886
No 145
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=97.73 E-value=3.1e-05 Score=66.59 Aligned_cols=63 Identities=17% Similarity=0.281 Sum_probs=36.4
Q ss_pred CCCCC-EEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhh--cCCcEEEeecCCCCCHHHHH
Q psy7275 3 DTGFP-YTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFY--STLKVVGFSSVSGEGTEELL 79 (150)
Q Consensus 3 k~~lP-~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy--~~l~vv~VSA~TGeGideL~ 79 (150)
..++| +|+|+||+|+.+.++..+ .++...+.+. .+...+ .|. ...++++|||++|.|++++.
T Consensus 152 ~~~v~~iIvviNK~Dl~~~~~~~~---~~~~i~~~~~-------~~l~~~-----g~~~~~~~~~i~iSA~~G~ni~~l~ 216 (439)
T 3j2k_7 152 TAGVKHLIVLINKMDDPTVNWSNE---RYEECKEKLV-------PFLKKV-----GFNPKKDIHFMPCSGLTGANLKEQS 216 (439)
T ss_pred HcCCCeEEEEeecCCCcccchHHH---HHHHHHHHHH-------HHHHHh-----cccccCCeeEEEeeccCCccccccc
Confidence 35678 899999999975443211 1111111111 111111 111 14689999999999999976
Q ss_pred H
Q psy7275 80 Q 80 (150)
Q Consensus 80 ~ 80 (150)
+
T Consensus 217 ~ 217 (439)
T 3j2k_7 217 D 217 (439)
T ss_pred c
Confidence 5
No 146
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=97.73 E-value=1.9e-05 Score=68.84 Aligned_cols=54 Identities=17% Similarity=0.177 Sum_probs=41.0
Q ss_pred CCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHHH
Q psy7275 6 FPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKLA 85 (150)
Q Consensus 6 lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e~ 85 (150)
.|+|+|+||+|+.+..... . +.++....+++.|||++|+|+++|++.|.+.
T Consensus 331 ~piivV~NK~Dl~~~~~~~-----------~------------------~~~~~~~~~~i~iSAktg~Gi~eL~~~i~~~ 381 (462)
T 3geh_A 331 RPLILVMNKIDLVEKQLIT-----------S------------------LEYPENITQIVHTAAAQKQGIDSLETAILEI 381 (462)
T ss_dssp SCEEEEEECTTSSCGGGST-----------T------------------CCCCTTCCCEEEEBTTTTBSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCcchhhH-----------H------------------HHHhccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 5999999999997654320 0 0112234689999999999999999999988
Q ss_pred HHH
Q psy7275 86 GED 88 (150)
Q Consensus 86 ~~e 88 (150)
+..
T Consensus 382 ~~~ 384 (462)
T 3geh_A 382 VQT 384 (462)
T ss_dssp HTT
T ss_pred Hhc
Confidence 754
No 147
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.71 E-value=3.1e-05 Score=58.37 Aligned_cols=82 Identities=6% Similarity=0.004 Sum_probs=45.4
Q ss_pred CCCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhc------------------hhhhhhhHHHHHHHHHHhhcCCcE
Q psy7275 3 DTGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEAD------------------SSYISNLTRSMSLALDEFYSTLKV 64 (150)
Q Consensus 3 k~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e------------------~~y~~~L~~slsl~l~efy~~l~v 64 (150)
..++|+|+|+||+|+.+.....++...+......+... ..+...|..++....+.++..+.+
T Consensus 118 ~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~~~~~~l~~~~~f~~~~~~~~v~~ 197 (218)
T 1nrj_B 118 ENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKKSLNEVERKINEEDYAENTLDVLQSTDGFKFANLEASVVA 197 (218)
T ss_dssp TTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHC--------------CTTC----CCCGGGSSSCEEE
T ss_pred cCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHhccccccccccccccchhhhcccccCCCCccccccCCceEE
Confidence 46889999999999987654333322222111111000 011222223333334455556778
Q ss_pred EEeecCCCCCHHHHHHHHHHH
Q psy7275 65 VGFSSVSGEGTEELLQLIKLA 85 (150)
Q Consensus 65 v~VSA~TGeGideL~~~I~e~ 85 (150)
+..|+.+| ++++++++|.+.
T Consensus 198 ~~~s~~~~-~i~~~~~~~~~~ 217 (218)
T 1nrj_B 198 FEGSINKR-KISQWREWIDEK 217 (218)
T ss_dssp EECBTTTT-BCHHHHHHHHHH
T ss_pred EeccccCC-cHHHHHHHHHhh
Confidence 88898887 699999988764
No 148
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=97.69 E-value=2.9e-05 Score=69.82 Aligned_cols=28 Identities=29% Similarity=0.622 Sum_probs=24.2
Q ss_pred CcEEEeecCCCCCHHHHHHHHHHHHHHH
Q psy7275 62 LKVVGFSSVSGEGTEELLQLIKLAGEDY 89 (150)
Q Consensus 62 l~vv~VSA~TGeGideL~~~I~e~~~ey 89 (150)
.+++++||++|.|+++|++.|...+..+
T Consensus 192 vpvv~vSA~tG~GI~eLl~~I~~~~~~~ 219 (594)
T 1g7s_A 192 VSIIPISAITGEGIPELLTMLMGLAQQY 219 (594)
T ss_dssp EEEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred ceEEEEeccCCCCchhHHHHHHhhcccc
Confidence 4899999999999999999998766543
No 149
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=97.69 E-value=4.2e-05 Score=64.68 Aligned_cols=28 Identities=21% Similarity=0.245 Sum_probs=23.8
Q ss_pred CCcEEE--eecCC---CCCHHHHHHHHHHHHHH
Q psy7275 61 TLKVVG--FSSVS---GEGTEELLQLIKLAGED 88 (150)
Q Consensus 61 ~l~vv~--VSA~T---GeGideL~~~I~e~~~e 88 (150)
..++++ +||++ |+|+++|++.|.+....
T Consensus 148 ~~~ii~~~~SA~~~~~g~gi~~L~~~l~~~~~~ 180 (370)
T 2elf_A 148 DWECISLNTNKSAKNPFEGVDELKARINEVAEK 180 (370)
T ss_dssp TCEEEECCCCTTSSSTTTTHHHHHHHHHHHHHH
T ss_pred ceEEEecccccccCcCCCCHHHHHHHHHhhccc
Confidence 468999 99999 99999999988776543
No 150
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=97.67 E-value=4.9e-05 Score=56.74 Aligned_cols=65 Identities=11% Similarity=0.047 Sum_probs=38.9
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHh--hcCCcEEEeecCCCCCHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEF--YSTLKVVGFSSVSGEGTEELLQL 81 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~ef--y~~l~vv~VSA~TGeGideL~~~ 81 (150)
.++|+|+|.||+|+.+.+...+ .. ..+... ....+ ...+ ..+.+++.+||++ .|+++++..
T Consensus 128 ~~~piilv~nK~Dl~~~~~~~~---~~----~~v~~~------~~~~~---~~~~~~~~~~~~~e~Sa~~-~~v~~~f~~ 190 (196)
T 3llu_A 128 PDMNFEVFIHKVDGLSDDHKIE---TQ----RDIHQR------ANDDL---ADAGLEKLHLSFYLTSIYD-HSIFEAFSK 190 (196)
T ss_dssp TTCEEEEEEECGGGSCHHHHHH---HH----HHHHHH------HHHHH---HHTTCTTSCEEEEEECTTS-THHHHHHHH
T ss_pred CCCcEEEEEeccccCchhhhhH---HH----hHHHHH------HHHHH---HHhhhhcCCcceEEEEech-hhHHHHHHH
Confidence 4789999999999976543211 00 111000 00000 0111 1245899999999 999999998
Q ss_pred HHHH
Q psy7275 82 IKLA 85 (150)
Q Consensus 82 I~e~ 85 (150)
|.+.
T Consensus 191 l~~~ 194 (196)
T 3llu_A 191 VVQK 194 (196)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8753
No 151
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=97.67 E-value=3.6e-05 Score=58.60 Aligned_cols=26 Identities=15% Similarity=0.287 Sum_probs=22.5
Q ss_pred CCcEEEeecC-CCCCHHHHHHHHHHHH
Q psy7275 61 TLKVVGFSSV-SGEGTEELLQLIKLAG 86 (150)
Q Consensus 61 ~l~vv~VSA~-TGeGideL~~~I~e~~ 86 (150)
..+++.+||+ +|.|+++++..|.+.+
T Consensus 176 ~~~~~e~SAk~~~~gv~~lf~~l~~~~ 202 (205)
T 1gwn_A 176 AATYIECSALQSENSVRDIFHVATLAC 202 (205)
T ss_dssp CSEEEECCTTTCHHHHHHHHHHHHHHH
T ss_pred CCEEEEeeeccCCcCHHHHHHHHHHHH
Confidence 3689999999 6999999999988754
No 152
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=97.66 E-value=7.2e-06 Score=73.10 Aligned_cols=65 Identities=15% Similarity=0.177 Sum_probs=40.9
Q ss_pred CCCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHH
Q psy7275 3 DTGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLI 82 (150)
Q Consensus 3 k~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I 82 (150)
..++|+|+|+||+|+.+.+.. ... ..+.. +.+..+++....+++++||++|.|+++|++.|
T Consensus 102 ~~~vPiIVViNKiDl~~~~~~-~v~-------~~l~~-----------~~~~~e~~~~~~~iv~vSAktG~GI~eLle~I 162 (537)
T 3izy_P 102 DAHVPIVLAINKCDKAEADPE-KVK-------KELLA-----------YDVVCEDYGGDVQAVHVSALTGENMMALAEAT 162 (537)
T ss_dssp TTTCCEEECCBSGGGTTTSCC-SSS-------SHHHH-----------TTSCCCCSSSSEEECCCCSSSSCSSHHHHHHH
T ss_pred HcCCcEEEEEecccccccchH-HHH-------HHHHh-----------hhhhHHhcCCCceEEEEECCCCCCchhHHHHH
Confidence 457899999999998754321 000 00100 00011122234689999999999999999998
Q ss_pred HHHH
Q psy7275 83 KLAG 86 (150)
Q Consensus 83 ~e~~ 86 (150)
...+
T Consensus 163 ~~l~ 166 (537)
T 3izy_P 163 IALA 166 (537)
T ss_dssp HHHH
T ss_pred HHhh
Confidence 7654
No 153
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=97.55 E-value=2.2e-05 Score=67.08 Aligned_cols=55 Identities=24% Similarity=0.292 Sum_probs=37.7
Q ss_pred CCCCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhc-CC-cEEEeecCCCCCHHHHH
Q psy7275 2 YDTGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYS-TL-KVVGFSSVSGEGTEELL 79 (150)
Q Consensus 2 yk~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~-~l-~vv~VSA~TGeGideL~ 79 (150)
.+.+.|+|+|+||+|+...... .. +|+. ++ ++++|||.+|.|+++|+
T Consensus 108 ~~~~~pvilv~NK~D~~~~~~~---~~----------------------------~~~~lg~~~~~~iSA~~g~gv~~L~ 156 (436)
T 2hjg_A 108 YRTKKPVVLAVNKLDNTEMRAN---IY----------------------------DFYSLGFGEPYPISGTHGLGLGDLL 156 (436)
T ss_dssp TTCCSCEEEEEECCCC-----C---CC----------------------------SSGGGSSCCCEECBTTTTBTHHHHH
T ss_pred HHcCCCEEEEEECccCccchhh---HH----------------------------HHHHcCCCCeEEEeCcCCCChHHHH
Confidence 3568899999999998643210 00 1111 22 78999999999999999
Q ss_pred HHHHHHHH
Q psy7275 80 QLIKLAGE 87 (150)
Q Consensus 80 ~~I~e~~~ 87 (150)
+.|.+.+.
T Consensus 157 ~~i~~~l~ 164 (436)
T 2hjg_A 157 DAVAEHFK 164 (436)
T ss_dssp HHHHHTGG
T ss_pred HHHHHhcC
Confidence 99977653
No 154
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=97.54 E-value=0.00013 Score=53.81 Aligned_cols=24 Identities=8% Similarity=-0.104 Sum_probs=20.9
Q ss_pred EEEeecCCCC-CHHHHHHHHHHHHH
Q psy7275 64 VVGFSSVSGE-GTEELLQLIKLAGE 87 (150)
Q Consensus 64 vv~VSA~TGe-GideL~~~I~e~~~ 87 (150)
++.+||++|. |+++|++.|.+.+.
T Consensus 153 ~~~~Sa~~~~~~~~~l~~~i~~~~~ 177 (184)
T 2zej_A 153 YHFVNATEESDALAKLRKTIINESL 177 (184)
T ss_dssp EEECCTTSCCHHHHHHHHHHHHHHH
T ss_pred eEEEecccCchhHHHHHHHHHHHHh
Confidence 8999999997 99999999877654
No 155
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=97.53 E-value=2.9e-05 Score=67.15 Aligned_cols=96 Identities=17% Similarity=0.142 Sum_probs=61.7
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK 83 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~ 83 (150)
.++|+|+|+||+|+.+.... +. .+.+. +- .+++++.+||++|.|++++++.|.
T Consensus 139 ~~~piIvV~NK~Dl~~~~~~-~~-------~~~l~------------------~~-~g~~v~~vSAktg~gI~eL~~~L~ 191 (423)
T 3qq5_A 139 MEIPFVVVVNKIDVLGEKAE-EL-------KGLYE------------------SR-YEAKVLLVSALQKKGFDDIGKTIS 191 (423)
T ss_dssp TTCCEEEECCCCTTTTCCCT-HH-------HHHSS------------------CC-TTCCCCCCSSCCTTSTTTHHHHHH
T ss_pred cCCCEEEEEeCcCCCCccHH-HH-------HHHHH------------------HH-cCCCEEEEECCCCCCHHHHHHHHH
Confidence 47899999999999766542 10 11111 00 146899999999999999999999
Q ss_pred HHHHH---HH-------------------------hhhHHHHHHHHHHHHHH------HHHHHHHhHhhCCCCCCCC
Q psy7275 84 LAGED---YE-------------------------KNYRVEWIRLRDEKAKS------EQLEKREQHFALPTPQPLW 126 (150)
Q Consensus 84 e~~~e---y~-------------------------~~y~pe~e~~~~~~~~~------~~~~~~~~~~~l~~~~~~~ 126 (150)
+.+.+ .. +...|..+.++...... ...+-+..++++.++.++-
T Consensus 192 ~~l~~~~e~~l~~dLv~~gd~v~lv~pid~~~pkgr~ilp~~~~ird~l~~~~~~~~~~~~~l~~~l~~l~~~~~lv 268 (423)
T 3qq5_A 192 EILPGDEEIPYLGDLIDGGDLVILVVPIDLGAPKGRLIMPQVHAIREALDREAIALVVKERELRYVMENIGMKPKLV 268 (423)
T ss_dssp HHSCCCCCCCSCSCCCCTTCCEEEECCCSCCSSTTCCCHHHHHHHHHHHHTTCEEEECCSTTHHHHHHHCSSCCSCC
T ss_pred HhhhhhccCcchhhccccCceEEEEeeccccCcCCccccchHHHHHHHHHhhhHHHHhhHHHHHHHHHhcCCCccEE
Confidence 88822 11 33566666666544321 2223566777776665553
No 156
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.49 E-value=9.3e-05 Score=63.20 Aligned_cols=25 Identities=16% Similarity=0.101 Sum_probs=22.3
Q ss_pred cEEEeecCCCCCHHHHHHHHHHHHH
Q psy7275 63 KVVGFSSVSGEGTEELLQLIKLAGE 87 (150)
Q Consensus 63 ~vv~VSA~TGeGideL~~~I~e~~~ 87 (150)
++++|||++|.|+++|++.|.+.+.
T Consensus 141 ~~~~iSA~~g~gv~~L~~~i~~~l~ 165 (439)
T 1mky_A 141 EPIPVSAEHNINLDTMLETIIKKLE 165 (439)
T ss_dssp SCEECBTTTTBSHHHHHHHHHHHHH
T ss_pred CEEEEeccCCCCHHHHHHHHHHhcc
Confidence 7899999999999999999977654
No 157
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=97.48 E-value=4.8e-05 Score=60.71 Aligned_cols=58 Identities=16% Similarity=0.259 Sum_probs=28.7
Q ss_pred CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHH
Q psy7275 5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKL 84 (150)
Q Consensus 5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e 84 (150)
++|+|+|+||+|+.+...... +.+.+.. . +. ..+++++.+||.+|+|++++++.|.+
T Consensus 144 ~~pvi~V~nK~D~~~~~e~~~-------~~~~i~~----------~----l~--~~~i~v~~~sa~~~~~~~~l~~~l~~ 200 (274)
T 3t5d_A 144 KVNIIPLIAKADTLTPEECQQ-------FKKQIMK----------E----IQ--EHKIKIYEFPETDDEEENKLVKKIKD 200 (274)
T ss_dssp TSCEEEEESSGGGSCHHHHHH-------HHHHHHH----------H----HH--HTTCCCCCC-----------CHHHHH
T ss_pred cCCEEEEEeccCCCCHHHHHH-------HHHHHHH----------H----HH--HcCCeEEcCCCCCChhHHHHHHHHhc
Confidence 689999999999876543211 1111110 0 00 13578899999999999999988876
Q ss_pred H
Q psy7275 85 A 85 (150)
Q Consensus 85 ~ 85 (150)
.
T Consensus 201 ~ 201 (274)
T 3t5d_A 201 R 201 (274)
T ss_dssp T
T ss_pred C
Confidence 4
No 158
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=97.48 E-value=9.6e-05 Score=64.03 Aligned_cols=18 Identities=33% Similarity=0.506 Sum_probs=15.7
Q ss_pred CCcEEEeecCCCCCHHHH
Q psy7275 61 TLKVVGFSSVSGEGTEEL 78 (150)
Q Consensus 61 ~l~vv~VSA~TGeGideL 78 (150)
..++++|||++|+|++++
T Consensus 211 ~~~~i~iSA~~g~gi~el 228 (483)
T 3p26_A 211 NINWVPISGFSGEGVYKI 228 (483)
T ss_dssp GEEEEECCSSSCTTSSSS
T ss_pred cceEEEEeeecCCCcccc
Confidence 468999999999999864
No 159
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=97.47 E-value=1.2e-05 Score=63.03 Aligned_cols=24 Identities=17% Similarity=0.062 Sum_probs=22.4
Q ss_pred EEeecCCCCCHHHHHHHHHHHHHH
Q psy7275 65 VGFSSVSGEGTEELLQLIKLAGED 88 (150)
Q Consensus 65 v~VSA~TGeGideL~~~I~e~~~e 88 (150)
+++||++|.|+++++..|.+.+.+
T Consensus 185 ~~~SA~~~~gv~~l~~~i~~~~~~ 208 (260)
T 2xtp_A 185 RAEGSNQDDQVKELMDCIEDLLME 208 (260)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccHHHHHHHHHHHHHHHHh
Confidence 789999999999999999998876
No 160
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=97.42 E-value=0.00016 Score=65.10 Aligned_cols=58 Identities=17% Similarity=0.204 Sum_probs=39.3
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHh-hcCCcEEEeecCCCCCHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEF-YSTLKVVGFSSVSGEGTEELLQLI 82 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~ef-y~~l~vv~VSA~TGeGideL~~~I 82 (150)
.++|+|+|+||+|+.+.+.. ...+.+. +.+ ....+++.+||++|.|+++|++.|
T Consensus 122 ~~ipiIvViNKiDl~~a~~~--------~v~~ei~-----------------~~lg~~~~~vi~vSAktg~GI~~Ll~~I 176 (599)
T 3cb4_D 122 MDLEVVPVLNKIDLPAADPE--------RVAEEIE-----------------DIVGIDATDAVRCSAKTGVGVQDVLERL 176 (599)
T ss_dssp TTCEEEEEEECTTSTTCCHH--------HHHHHHH-----------------HHTCCCCTTCEEECTTTCTTHHHHHHHH
T ss_pred CCCCEEEeeeccCcccccHH--------HHHHHHH-----------------HHhCCCcceEEEeecccCCCchhHHHHH
Confidence 57899999999999765421 1111111 011 011368999999999999999998
Q ss_pred HHHH
Q psy7275 83 KLAG 86 (150)
Q Consensus 83 ~e~~ 86 (150)
.+.+
T Consensus 177 ~~~l 180 (599)
T 3cb4_D 177 VRDI 180 (599)
T ss_dssp HHHS
T ss_pred hhcC
Confidence 7654
No 161
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.40 E-value=2.5e-05 Score=65.08 Aligned_cols=26 Identities=4% Similarity=0.139 Sum_probs=20.0
Q ss_pred CCCCCEEEeeecCCCCCchh----hHHHhh
Q psy7275 3 DTGFPYTELVVGIDIVNHKY----AIEWMQ 28 (150)
Q Consensus 3 k~~lP~IlV~NKiDl~~~~~----~~ewm~ 28 (150)
..++|.|+|+||+|+.+... ..+|..
T Consensus 115 ~~~~~~vivlnK~DL~~~~~~~~~~~~~~~ 144 (307)
T 1t9h_A 115 ANDIQPIICITKMDLIEDQDTEDTIQAYAE 144 (307)
T ss_dssp TTTCEEEEEEECGGGCCCHHHHHHHHHHHH
T ss_pred HCCCCEEEEEECCccCchhhhHHHHHHHHH
Confidence 46889999999999987643 355653
No 162
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=97.38 E-value=0.00033 Score=60.39 Aligned_cols=58 Identities=17% Similarity=0.253 Sum_probs=41.4
Q ss_pred CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHH
Q psy7275 5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKL 84 (150)
Q Consensus 5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e 84 (150)
..|.|+|+||+|+..... + +.+.+.+. -....++.|||++|+|+++|+..|.+
T Consensus 269 ~~P~ILVlNKlDl~~~~~----~---~~l~~~l~--------------------~~g~~vi~iSA~~g~gi~eL~~~i~~ 321 (416)
T 1udx_A 269 RRPSLVALNKVDLLEEEA----V---KALADALA--------------------REGLAVLPVSALTGAGLPALKEALHA 321 (416)
T ss_dssp HSCEEEEEECCTTSCHHH----H---HHHHHHHH--------------------TTTSCEEECCTTTCTTHHHHHHHHHH
T ss_pred cCCEEEEEECCChhhHHH----H---HHHHHHHH--------------------hcCCeEEEEECCCccCHHHHHHHHHH
Confidence 469999999999875421 1 11111111 02468999999999999999999998
Q ss_pred HHHHH
Q psy7275 85 AGEDY 89 (150)
Q Consensus 85 ~~~ey 89 (150)
.+.+.
T Consensus 322 ~l~~~ 326 (416)
T 1udx_A 322 LVRST 326 (416)
T ss_dssp HHHTS
T ss_pred HHHhc
Confidence 88653
No 163
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=97.37 E-value=0.00062 Score=60.23 Aligned_cols=24 Identities=21% Similarity=0.152 Sum_probs=21.7
Q ss_pred cEEEeecCCCCCHHHHHHHHHHHH
Q psy7275 63 KVVGFSSVSGEGTEELLQLIKLAG 86 (150)
Q Consensus 63 ~vv~VSA~TGeGideL~~~I~e~~ 86 (150)
+++.+||++|.|+++|+++|.+.+
T Consensus 252 PV~~gSA~~~~GV~~Lld~i~~~~ 275 (528)
T 3tr5_A 252 PIFFGSAINNFGVGELLDAFVKEA 275 (528)
T ss_dssp EEEECBGGGTBSHHHHHHHHHHHS
T ss_pred EEEeccccCCccHHHHHHHHHHhC
Confidence 788899999999999999997765
No 164
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=97.35 E-value=0.00017 Score=65.07 Aligned_cols=58 Identities=17% Similarity=0.163 Sum_probs=38.9
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhh-cCCcEEEeecCCCCCHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFY-STLKVVGFSSVSGEGTEELLQLI 82 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy-~~l~vv~VSA~TGeGideL~~~I 82 (150)
.++|+|+|+||+|+.+.+.. ...+.+.. .+. ...+++.+||++|.|+++|++.|
T Consensus 124 ~~ipiIvviNKiDl~~a~~~--------~v~~el~~-----------------~lg~~~~~vi~vSAktg~GI~~Lle~I 178 (600)
T 2ywe_A 124 QDLVIIPVINKIDLPSADVD--------RVKKQIEE-----------------VLGLDPEEAILASAKEGIGIEEILEAI 178 (600)
T ss_dssp TTCEEEEEEECTTSTTCCHH--------HHHHHHHH-----------------TSCCCGGGCEECBTTTTBSHHHHHHHH
T ss_pred CCCCEEEEEeccCccccCHH--------HHHHHHHH-----------------hhCCCcccEEEEEeecCCCchHHHHHH
Confidence 57899999999999765421 11111110 010 01258999999999999999988
Q ss_pred HHHH
Q psy7275 83 KLAG 86 (150)
Q Consensus 83 ~e~~ 86 (150)
.+.+
T Consensus 179 ~~~l 182 (600)
T 2ywe_A 179 VNRI 182 (600)
T ss_dssp HHHS
T ss_pred HHhc
Confidence 7654
No 165
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=97.32 E-value=4.2e-05 Score=60.64 Aligned_cols=60 Identities=15% Similarity=0.209 Sum_probs=38.8
Q ss_pred CCCCEEEeeecCCCCCchh-hHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKY-AIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLI 82 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~-~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I 82 (150)
.+.|+|+|+||+|+.+... ..++ +.... + .+ . ....+++.+||++|.|++++++.|
T Consensus 191 ~~~~~i~V~NK~Dl~~~~~~~~~~----------~~~~~-~------~~-----~-~~~~~v~~~SA~~~~gi~~l~~~l 247 (299)
T 2aka_B 191 QGQRTIGVITKLDLMDEGTDARDV----------LENKL-L------PL-----R-RGYIGVVNRSQKDIDGKKDITAAL 247 (299)
T ss_dssp TCSSEEEEEECGGGSCTTCCCHHH----------HTTCS-S------CC-----T-TCEEECCCCCCBCTTSCBCHHHHH
T ss_pred CCCeEEEEEEccccCCCCchHHHH----------HhCCc-C------cC-----C-CCcEEEECCChhhccccccHHHHH
Confidence 4689999999999976532 1111 11000 0 00 0 011367899999999999999999
Q ss_pred HHHH
Q psy7275 83 KLAG 86 (150)
Q Consensus 83 ~e~~ 86 (150)
.+..
T Consensus 248 ~~~~ 251 (299)
T 2aka_B 248 AAER 251 (299)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8744
No 166
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=97.29 E-value=2.9e-05 Score=68.68 Aligned_cols=62 Identities=24% Similarity=0.237 Sum_probs=38.5
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK 83 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~ 83 (150)
.++|+|+|+||+|+.+.+.. ... ..+.. ..+ ..+++....+++++||++|.|+++|++.|.
T Consensus 102 ~~vPiIVviNKiDl~~~~~~-~v~-------~~l~~-~~~----------~~~~~~~~~~~v~vSAktG~gI~eLle~I~ 162 (501)
T 1zo1_I 102 AQVPVVVAVNKIDKPEADPD-RVK-------NELSQ-YGI----------LPEEWGGESQFVHVSAKAGTGIDELLDAIL 162 (501)
T ss_dssp TTCCEEEEEECSSSSTTCCC-CTT-------CCCCC-CCC----------CTTCCSSSCEEEECCTTTCTTCTTHHHHTT
T ss_pred cCceEEEEEEeccccccCHH-HHH-------HHHHH-hhh----------hHHHhCCCccEEEEeeeeccCcchhhhhhh
Confidence 57899999999999753220 000 00000 000 001222346899999999999999999875
Q ss_pred H
Q psy7275 84 L 84 (150)
Q Consensus 84 e 84 (150)
.
T Consensus 163 ~ 163 (501)
T 1zo1_I 163 L 163 (501)
T ss_dssp T
T ss_pred h
Confidence 3
No 167
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=97.26 E-value=0.00011 Score=62.09 Aligned_cols=16 Identities=25% Similarity=0.582 Sum_probs=13.7
Q ss_pred CCCC-EEEeeecCCCCC
Q psy7275 4 TGFP-YTELVVGIDIVN 19 (150)
Q Consensus 4 ~~lP-~IlV~NKiDl~~ 19 (150)
.++| +|+|+||+|+.+
T Consensus 126 ~~ip~iivviNK~Dl~~ 142 (405)
T 2c78_A 126 VGVPYIVVFMNKVDMVD 142 (405)
T ss_dssp TTCCCEEEEEECGGGCC
T ss_pred cCCCEEEEEEECccccC
Confidence 4688 889999999975
No 168
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=97.26 E-value=8e-05 Score=66.65 Aligned_cols=15 Identities=27% Similarity=0.375 Sum_probs=13.9
Q ss_pred CcEEEeecCCCCCHH
Q psy7275 62 LKVVGFSSVSGEGTE 76 (150)
Q Consensus 62 l~vv~VSA~TGeGid 76 (150)
+++++|||++|.|++
T Consensus 357 ~~ii~iSA~~G~gI~ 371 (592)
T 3mca_A 357 VHFVPISAISGTNLI 371 (592)
T ss_dssp EEEEEECSSSCSSSC
T ss_pred eEEEEEecccCcccc
Confidence 479999999999998
No 169
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=97.22 E-value=0.00055 Score=50.98 Aligned_cols=63 Identities=19% Similarity=0.221 Sum_probs=40.8
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK 83 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~ 83 (150)
.++|.++|.||+|+.+...... ..+..... +.++...+..+++||++|.|++++++.|.
T Consensus 136 ~~~~~~~v~nK~D~~s~~~~~~---~~~~~~~~------------------~~~~~~~~~~~~~Sal~~~~~~~l~~~l~ 194 (210)
T 1pui_A 136 SNIAVLVLLTKADKLASGARKA---QLNMVREA------------------VLAFNGDVQVETFSSLKKQGVDKLRQKLD 194 (210)
T ss_dssp TTCCEEEEEECGGGSCHHHHHH---HHHHHHHH------------------HGGGCSCEEEEECBTTTTBSHHHHHHHHH
T ss_pred cCCCeEEEEecccCCCchhHHH---HHHHHHHH------------------HHhcCCCCceEEEeecCCCCHHHHHHHHH
Confidence 4789999999999876432110 01111111 11222235788999999999999999988
Q ss_pred HHHH
Q psy7275 84 LAGE 87 (150)
Q Consensus 84 e~~~ 87 (150)
+...
T Consensus 195 ~~~~ 198 (210)
T 1pui_A 195 TWFS 198 (210)
T ss_dssp HHHC
T ss_pred HHHh
Confidence 7653
No 170
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=97.17 E-value=0.0003 Score=60.90 Aligned_cols=19 Identities=16% Similarity=0.350 Sum_probs=16.6
Q ss_pred CCcEEEeecCCCCCHHHHH
Q psy7275 61 TLKVVGFSSVSGEGTEELL 79 (150)
Q Consensus 61 ~l~vv~VSA~TGeGideL~ 79 (150)
..+++++||++|.|+++++
T Consensus 225 ~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 225 DVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp HEEEEECBTTTTBTTSSCC
T ss_pred CceEEeccccccccccccc
Confidence 4689999999999998865
No 171
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=97.15 E-value=0.0002 Score=61.37 Aligned_cols=53 Identities=23% Similarity=0.182 Sum_probs=33.8
Q ss_pred CCCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhc--CCcEEEeecCCCCCHHHHHH
Q psy7275 3 DTGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYS--TLKVVGFSSVSGEGTEELLQ 80 (150)
Q Consensus 3 k~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~--~l~vv~VSA~TGeGideL~~ 80 (150)
+.+.|+|+|+||+|+.+.... +. +||. .-.+++|||.+|.|+++|++
T Consensus 129 ~~~~pvilV~NK~D~~~~~~~--~~-----------------------------e~~~lg~~~~~~iSA~~g~gv~~L~~ 177 (456)
T 4dcu_A 129 RTKKPVVLAVNKLDNTEMRAN--IY-----------------------------DFYSLGFGEPYPISGTHGLGLGDLLD 177 (456)
T ss_dssp TCCSCEEEEEECC-----------C-----------------------------CSGGGSSSSEEECCTTTCTTHHHHHH
T ss_pred HcCCCEEEEEECccchhhhhh--HH-----------------------------HHHHcCCCceEEeecccccchHHHHH
Confidence 567899999999998543210 00 1111 12678999999999999999
Q ss_pred HHHHHH
Q psy7275 81 LIKLAG 86 (150)
Q Consensus 81 ~I~e~~ 86 (150)
.+.+.+
T Consensus 178 ~i~~~l 183 (456)
T 4dcu_A 178 AVAEHF 183 (456)
T ss_dssp HHHTTG
T ss_pred HHHhhc
Confidence 987643
No 172
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=97.15 E-value=0.00017 Score=61.54 Aligned_cols=20 Identities=15% Similarity=0.253 Sum_probs=17.0
Q ss_pred CcEEEeecCCCCCHHHHHHH
Q psy7275 62 LKVVGFSSVSGEGTEELLQL 81 (150)
Q Consensus 62 l~vv~VSA~TGeGideL~~~ 81 (150)
.+++++||++|.|+++++..
T Consensus 198 ~~~i~vSA~~g~gi~~~~~~ 217 (434)
T 1zun_B 198 MAFVPMSALKGDNVVNKSER 217 (434)
T ss_dssp EEEEECCTTTCTTTSSCCTT
T ss_pred ceEEEEeccCCCCccccccc
Confidence 58999999999999986543
No 173
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=97.11 E-value=0.00036 Score=56.84 Aligned_cols=64 Identities=19% Similarity=0.055 Sum_probs=36.3
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhh-cCCcEEEeecCCCCCHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFY-STLKVVGFSSVSGEGTEELLQLI 82 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy-~~l~vv~VSA~TGeGideL~~~I 82 (150)
.++|+|+|+||+|+.+.+...+..+. ..+.+. .+ ..++. ...+++.+||++ .|+.+.+..+
T Consensus 114 ~~~piilv~NK~Dl~~~~~r~~~~~v---~~~~~~-------~~-------~~~~g~~~~~~~~tSa~~-~~i~e~~~~i 175 (307)
T 3r7w_A 114 PDAKIFVLLHKMDLVQLDKREELFQI---MMKNLS-------ET-------SSEFGFPNLIGFPTSIWD-ESLYKAWSQI 175 (307)
T ss_dssp TTCEEEEEEECGGGSCHHHHHHHHHH---HHHHHH-------HH-------HHTTTCCSCEEEECCTTS-SHHHHHHHHH
T ss_pred CCCeEEEEEecccccchhhhhHHHHH---HHHHHH-------HH-------HHHcCCCCeEEEEeeecC-ChHHHHHHHH
Confidence 37899999999999764332111000 000000 01 11111 137999999999 7777777666
Q ss_pred HHH
Q psy7275 83 KLA 85 (150)
Q Consensus 83 ~e~ 85 (150)
...
T Consensus 176 v~~ 178 (307)
T 3r7w_A 176 VCS 178 (307)
T ss_dssp HHT
T ss_pred HHH
Confidence 553
No 174
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=97.11 E-value=0.00028 Score=59.55 Aligned_cols=24 Identities=13% Similarity=0.151 Sum_probs=18.5
Q ss_pred CCcEEEeecCCCCC----------HHHHHHHHHH
Q psy7275 61 TLKVVGFSSVSGEG----------TEELLQLIKL 84 (150)
Q Consensus 61 ~l~vv~VSA~TGeG----------ideL~~~I~e 84 (150)
..+++++||++|.| +++|+++|.+
T Consensus 158 ~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~ 191 (397)
T 1d2e_A 158 ETPIIVGSALCALEQRDPELGLKSVQKLLDAVDT 191 (397)
T ss_dssp TSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHH
T ss_pred cCcEEEeehhhcccccCCCccCCcHHHHHHHHHH
Confidence 46999999999874 6677766654
No 175
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=97.10 E-value=0.0026 Score=57.80 Aligned_cols=26 Identities=19% Similarity=0.300 Sum_probs=23.0
Q ss_pred CcEEEeecC--------------CCCCHHHHHHHHHHHHH
Q psy7275 62 LKVVGFSSV--------------SGEGTEELLQLIKLAGE 87 (150)
Q Consensus 62 l~vv~VSA~--------------TGeGideL~~~I~e~~~ 87 (150)
.++++|||+ +|.|+++|+..|.+.+.
T Consensus 285 ~~v~~vSAk~al~~~~~~~~~~~~~~Gi~~L~~~L~~~l~ 324 (695)
T 2j69_A 285 ERVFELSSIQALRRRLKNPQADLDGTGFPKFMDSLNTFLT 324 (695)
T ss_dssp GTEEECCHHHHHHHHHHCTTCCCTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEeChHHHHhhccCchhhhhccCHHHHHHHHHHHHH
Confidence 479999999 99999999999987663
No 176
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=97.06 E-value=0.00024 Score=61.36 Aligned_cols=19 Identities=26% Similarity=0.265 Sum_probs=16.1
Q ss_pred CCcEEEeecCCCCCHHHHH
Q psy7275 61 TLKVVGFSSVSGEGTEELL 79 (150)
Q Consensus 61 ~l~vv~VSA~TGeGideL~ 79 (150)
..+++++||++|.|++++.
T Consensus 185 ~~~~i~vSA~~g~nv~~~~ 203 (458)
T 1f60_A 185 TVPFVPISGWNGDNMIEAT 203 (458)
T ss_dssp GCCEEECCTTTCBTTTBCC
T ss_pred CceEEEeecccCcCccccc
Confidence 3789999999999997653
No 177
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=97.04 E-value=0.0016 Score=48.42 Aligned_cols=60 Identities=12% Similarity=0.082 Sum_probs=39.7
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK 83 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~ 83 (150)
.+.|+++|+||+|+.+.... ..+. ..++ . .+ ..+.++.+||++|.|++++++.|.
T Consensus 109 ~~~~i~~v~nK~Dl~~~~~~-----~~~~-a~~l----------~-------~~--~~~~~~d~Sal~~~~i~~l~~~l~ 163 (199)
T 2f9l_A 109 SNIVIMLVGNKSDLRHLRAV-----PTDE-ARAF----------A-------EK--NNLSFIETSALDSTNVEEAFKNIL 163 (199)
T ss_dssp TTCEEEEEEECTTCGGGCCS-----CHHH-HHHH----------H-------HH--TTCEEEECCTTTCTTHHHHHHHHH
T ss_pred CCCeEEEEEECcccccccCc-----CHHH-HHHH----------H-------HH--cCCeEEEEeCCCCCCHHHHHHHHH
Confidence 36799999999998542211 0000 0111 0 11 246788899999999999999998
Q ss_pred HHHHH
Q psy7275 84 LAGED 88 (150)
Q Consensus 84 e~~~e 88 (150)
+.+.+
T Consensus 164 ~~~~~ 168 (199)
T 2f9l_A 164 TEIYR 168 (199)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87643
No 178
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=97.01 E-value=0.00042 Score=62.25 Aligned_cols=19 Identities=32% Similarity=0.431 Sum_probs=16.6
Q ss_pred CCcEEEeecCCCCCHHHHH
Q psy7275 61 TLKVVGFSSVSGEGTEELL 79 (150)
Q Consensus 61 ~l~vv~VSA~TGeGideL~ 79 (150)
..++++|||++|.|++++.
T Consensus 345 ~~~~i~vSA~tG~gI~el~ 363 (611)
T 3izq_1 345 NINWVPISGFSGEGVYKIE 363 (611)
T ss_dssp GCEEEECCTTTCTTTSSCT
T ss_pred CccEEeeecccCCCccccC
Confidence 4689999999999998763
No 179
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.91 E-value=0.00041 Score=58.14 Aligned_cols=59 Identities=8% Similarity=0.076 Sum_probs=27.0
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK 83 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~ 83 (150)
.++|+|+|+||+|+.+...... +.+.+.. + + + ..+++++.+||++|.| ++.+..+.
T Consensus 173 ~~~piIlV~NK~Dl~~~~ev~~-------~k~~i~~-------~-------~-~-~~~i~~~~~Sa~~~~~-~e~~~~l~ 228 (361)
T 2qag_A 173 NKVNIVPVIAKADTLTLKERER-------LKKRILD-------E-------I-E-EHNIKIYHLPDAESDE-DEDFKEQT 228 (361)
T ss_dssp S-SCEEEEEECCSSSCHHHHHH-------HHHHHHH-------H-------T-T-CC-CCSCCCC----------CHHHH
T ss_pred cCCCEEEEEECCCCCCHHHHHH-------HHHHHHH-------H-------H-H-HCCCCEEeCCCcCCCc-chhHHHHH
Confidence 4689999999999976543211 1111110 0 0 0 1246889999999998 65555444
Q ss_pred HHH
Q psy7275 84 LAG 86 (150)
Q Consensus 84 e~~ 86 (150)
..+
T Consensus 229 ~~i 231 (361)
T 2qag_A 229 RLL 231 (361)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 180
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=96.88 E-value=0.00042 Score=58.55 Aligned_cols=26 Identities=12% Similarity=-0.038 Sum_probs=23.1
Q ss_pred CCcEEEeecCCCCCHHHHHHHHHHHH
Q psy7275 61 TLKVVGFSSVSGEGTEELLQLIKLAG 86 (150)
Q Consensus 61 ~l~vv~VSA~TGeGideL~~~I~e~~ 86 (150)
.+.++.+||++|+|++++|..|.+.+
T Consensus 326 ~~~~~~tSA~d~~nV~~vF~~v~~~i 351 (362)
T 1zcb_A 326 PLYHHFTTAINTENIRLVFRDVKDTI 351 (362)
T ss_dssp CCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred ceEEEEEecCCchhHHHHHHHHHHHH
Confidence 46788999999999999999998766
No 181
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.87 E-value=0.00075 Score=52.16 Aligned_cols=63 Identities=13% Similarity=0.146 Sum_probs=35.7
Q ss_pred CCEEEeeecCCCCCchhhHHHhhcHH-HHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCC-----CCHHHHH
Q psy7275 6 FPYTELVVGIDIVNHKYAIEWMQDFE-VFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSG-----EGTEELL 79 (150)
Q Consensus 6 lP~IlV~NKiDl~~~~~~~ewm~D~e-~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TG-----eGideL~ 79 (150)
.|+|+|+||+|+.+.....+++.... .+++ .+.++ +.+++.+++.++ .|+.+|+
T Consensus 146 ~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~------------------l~~~~--~~~~~~~~~~~~~~~~~~~v~~ll 205 (239)
T 3lxx_A 146 SFMILIFTRKDDLGDTNLHDYLREAPEDIQD------------------LMDIF--GDRYCALNNKATGAEQEAQRAQLL 205 (239)
T ss_dssp GGEEEEEECGGGC------------CHHHHH------------------HHHHH--SSSEEECCTTCCHHHHHHHHHHHH
T ss_pred ceEEEEEeCCccCCcccHHHHHHhchHHHHH------------------HHHHc--CCEEEEEECCCCccccHHHHHHHH
Confidence 49999999999876554444432211 1111 12233 346777877754 7899999
Q ss_pred HHHHHHHHH
Q psy7275 80 QLIKLAGED 88 (150)
Q Consensus 80 ~~I~e~~~e 88 (150)
..|.+.+.+
T Consensus 206 ~~i~~~~~~ 214 (239)
T 3lxx_A 206 GLIQRVVRE 214 (239)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999888865
No 182
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=96.81 E-value=0.00031 Score=59.28 Aligned_cols=25 Identities=8% Similarity=0.139 Sum_probs=21.7
Q ss_pred CcEEEeecCCCCCHHHHHHHHHHHH
Q psy7275 62 LKVVGFSSVSGEGTEELLQLIKLAG 86 (150)
Q Consensus 62 l~vv~VSA~TGeGideL~~~I~e~~ 86 (150)
+.++.+||++|+|++++|..|.+.+
T Consensus 319 ~~~~eTSA~d~~nV~~vF~~v~~~I 343 (354)
T 2xtz_A 319 FKIYRTTALDQKLVKKTFKLVDETL 343 (354)
T ss_dssp EEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred eEEEEEEeecchhHHHHHHHHHHHH
Confidence 3568999999999999999988765
No 183
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=96.80 E-value=0.00075 Score=57.65 Aligned_cols=19 Identities=16% Similarity=0.246 Sum_probs=16.3
Q ss_pred CcEEEeecCCCCCHHHHHH
Q psy7275 62 LKVVGFSSVSGEGTEELLQ 80 (150)
Q Consensus 62 l~vv~VSA~TGeGideL~~ 80 (150)
.+++++||++|.|++++++
T Consensus 187 ~~~i~iSA~~g~~v~e~~~ 205 (435)
T 1jny_A 187 VRFVPVVAPSGDNITHKSE 205 (435)
T ss_dssp CEEEECBTTTTBTTTBCCS
T ss_pred ceEEEeecccCcccccccc
Confidence 6899999999999986643
No 184
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.72 E-value=0.0027 Score=50.00 Aligned_cols=63 Identities=13% Similarity=0.175 Sum_probs=39.7
Q ss_pred CCCEEEeeecCCCCCchhhHHHhhc--HHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCC-----CCCHHH
Q psy7275 5 GFPYTELVVGIDIVNHKYAIEWMQD--FEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVS-----GEGTEE 77 (150)
Q Consensus 5 ~lP~IlV~NKiDl~~~~~~~ewm~D--~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~T-----GeGide 77 (150)
+.|+|+|.||+|+.+.+. .+++.. .+.++.. +..+ +.+++.+++.. |.|+++
T Consensus 139 ~~~iilv~nK~Dl~~~~~-~~~l~~~~~~~l~~l------------------~~~~--g~~~~~~~~~~~~~~~~~~v~~ 197 (247)
T 3lxw_A 139 KWMVIVFTRKEDLAGGSL-HDYVSNTENRALREL------------------VAEC--GGRVCAFDNRATGREQEAQVEQ 197 (247)
T ss_dssp GGEEEEEECGGGGTTCCH-HHHHHHCCCHHHHHH------------------HHHT--TTCEEECCTTCCHHHHHHHHHH
T ss_pred ccEEEEEEchHhcCCCCH-HHHHhhcccHHHHHH------------------HHHc--CCeEEEEeCCCCccccHHHHHH
Confidence 579999999999966432 222211 0111111 2222 34666666655 689999
Q ss_pred HHHHHHHHHHH
Q psy7275 78 LLQLIKLAGED 88 (150)
Q Consensus 78 L~~~I~e~~~e 88 (150)
|++.|.+.+.+
T Consensus 198 Ll~~i~~~~~~ 208 (247)
T 3lxw_A 198 LLGMVEGLVLE 208 (247)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999976
No 185
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=96.71 E-value=0.0006 Score=57.45 Aligned_cols=26 Identities=0% Similarity=-0.132 Sum_probs=23.0
Q ss_pred CCcEEEeecCCCCCHHHHHHHHHHHH
Q psy7275 61 TLKVVGFSSVSGEGTEELLQLIKLAG 86 (150)
Q Consensus 61 ~l~vv~VSA~TGeGideL~~~I~e~~ 86 (150)
.+.++.+||++|+|++++|..|.+.+
T Consensus 317 ~~~~~etSA~~~~nV~~vF~~v~~~i 342 (353)
T 1cip_A 317 EIYTHFTCATDTKNVQFVFDAVTDVI 342 (353)
T ss_dssp CEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred ceEEEEEECcCchhHHHHHHHHHHHH
Confidence 46788999999999999999998765
No 186
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=96.66 E-value=0.0022 Score=57.94 Aligned_cols=25 Identities=32% Similarity=0.099 Sum_probs=22.4
Q ss_pred CcEEEeecCCCCCHHHHHHHHHHHH
Q psy7275 62 LKVVGFSSVSGEGTEELLQLIKLAG 86 (150)
Q Consensus 62 l~vv~VSA~TGeGideL~~~I~e~~ 86 (150)
++++.+||++|.|+++|++.|.+.+
T Consensus 248 ~pv~~~SA~~~~Gv~~Ll~~i~~~l 272 (665)
T 2dy1_A 248 YPVALASGEREIGVLPLLELILEAL 272 (665)
T ss_dssp EEEEECBTTTTBSHHHHHHHHHHHS
T ss_pred eEEEEeecccCcCHHHHHHHHHHhC
Confidence 4899999999999999999998755
No 187
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=96.66 E-value=0.0066 Score=53.61 Aligned_cols=25 Identities=12% Similarity=0.012 Sum_probs=22.2
Q ss_pred CcEEEeecCCCCCHHHHHHHHHHHH
Q psy7275 62 LKVVGFSSVSGEGTEELLQLIKLAG 86 (150)
Q Consensus 62 l~vv~VSA~TGeGideL~~~I~e~~ 86 (150)
.+++..||++|.|+++|+++|.+.+
T Consensus 252 ~Pv~~gSA~~~~Gv~~LLd~i~~~~ 276 (529)
T 2h5e_A 252 TPVFFGTALGNFGVDHMLDGLVEWA 276 (529)
T ss_dssp EEEEECBTTTTBSHHHHHHHHHHHS
T ss_pred eEEEeeecccCCCHHHHHHHHHHhC
Confidence 3789999999999999999988765
No 188
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=96.57 E-value=0.0035 Score=46.63 Aligned_cols=25 Identities=20% Similarity=0.214 Sum_probs=21.9
Q ss_pred CCcEEEeecCCCCCHHHHHHHHHHH
Q psy7275 61 TLKVVGFSSVSGEGTEELLQLIKLA 85 (150)
Q Consensus 61 ~l~vv~VSA~TGeGideL~~~I~e~ 85 (150)
.+.++.+||++|.|++++++.|.+.
T Consensus 165 ~~~~ld~Sald~~~v~~l~~~l~~~ 189 (191)
T 1oix_A 165 GLSFIETSALDSTNVEAAFQTILTE 189 (191)
T ss_dssp TCEEEECCTTTCTTHHHHHHHHHHH
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 4678889999999999999998764
No 189
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=96.57 E-value=0.0025 Score=61.99 Aligned_cols=17 Identities=24% Similarity=0.466 Sum_probs=13.9
Q ss_pred CCCC-EEEeeecCCCCCc
Q psy7275 4 TGFP-YTELVVGIDIVNH 20 (150)
Q Consensus 4 ~~lP-~IlV~NKiDl~~~ 20 (150)
.++| +|+|+||+|+.+.
T Consensus 410 lgIP~IIVVINKiDLv~d 427 (1289)
T 3avx_A 410 VGVPYIIVFLNKCDMVDD 427 (1289)
T ss_dssp HTCSCEEEEEECCTTCCC
T ss_pred cCCCeEEEEEeecccccc
Confidence 4678 7899999999763
No 190
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=96.45 E-value=0.0016 Score=53.83 Aligned_cols=59 Identities=15% Similarity=0.218 Sum_probs=37.2
Q ss_pred CCCCEEEeeecCCCCCchh-hHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKY-AIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLI 82 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~-~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I 82 (150)
.+.|+|+|+||+|+.+... ..++ +.... + .+ . .....++.+||++|.|++++++++
T Consensus 196 ~~~~~i~V~NK~Dl~~~~~~~~~~----------~~~~~-~------~l-----~-~~~~~v~~~SA~~~~~i~~l~~~l 252 (353)
T 2x2e_A 196 QGQRTIGVITKLDLMDEGTDARDV----------LENKL-L------PL-----R-RGYIGVVNRSQKDIDGKKDITAAL 252 (353)
T ss_dssp TCTTEEEEEECGGGSCTTCCCHHH----------HTTCS-S------CC-----T-TCEEECCCCCHHHHHTTCCHHHHH
T ss_pred CCCceEEEeccccccCcchhHHHH----------HhCCc-c------cc-----c-CCceEEEeCCcccccccccHHHHH
Confidence 4689999999999976432 1111 11000 0 00 0 001367889999999999999988
Q ss_pred HHH
Q psy7275 83 KLA 85 (150)
Q Consensus 83 ~e~ 85 (150)
.+.
T Consensus 253 ~~e 255 (353)
T 2x2e_A 253 AAE 255 (353)
T ss_dssp HHH
T ss_pred HHH
Confidence 763
No 191
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=96.43 E-value=0.026 Score=44.79 Aligned_cols=62 Identities=15% Similarity=0.133 Sum_probs=37.7
Q ss_pred CCCCCEEEeeecCCCCCchh-hHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHh-hcCCcEEEeecCC---CCCHHH
Q psy7275 3 DTGFPYTELVVGIDIVNHKY-AIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEF-YSTLKVVGFSSVS---GEGTEE 77 (150)
Q Consensus 3 k~~lP~IlV~NKiDl~~~~~-~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~ef-y~~l~vv~VSA~T---GeGide 77 (150)
+.+.|+|+|+||+|+.+... ..+++ .... ..+ ....+++.+||.+ |.|+++
T Consensus 196 ~~~~~~i~v~NK~Dl~~~~~~~~~~~----------~~~~--------------~~~~~~~~~v~~~sa~~~~~~~gv~~ 251 (315)
T 1jwy_B 196 PEGKRTIGVITKLDLMDKGTDAMEVL----------TGRV--------------IPLTLGFIGVINRSQEDIIAKKSIRE 251 (315)
T ss_dssp SSCSSEEEEEECTTSSCSSCCCHHHH----------TTSS--------------SCCTTCEEECCCCCHHHHSSSCCHHH
T ss_pred CCCCcEEEEEcCcccCCcchHHHHHH----------hCCC--------------ccCCCCeEEEecCChhhhccCCCHHH
Confidence 35789999999999986543 12211 1000 000 0112455556666 899999
Q ss_pred HHHHHHHHHHH
Q psy7275 78 LLQLIKLAGED 88 (150)
Q Consensus 78 L~~~I~e~~~e 88 (150)
++..+.+...+
T Consensus 252 l~~~~~~~~~~ 262 (315)
T 1jwy_B 252 SLKSEILYFKN 262 (315)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhC
Confidence 99998877754
No 192
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=96.35 E-value=0.0018 Score=52.83 Aligned_cols=58 Identities=9% Similarity=0.086 Sum_probs=28.6
Q ss_pred CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHH
Q psy7275 5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKL 84 (150)
Q Consensus 5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e 84 (150)
+.|+|+|+||.|+.+..... .+.+.+.. .+.+ + +++++.+||++| |+++++..+.+
T Consensus 155 ~~~iilV~~K~Dl~~~~e~~-------~~~~~~~~--------------~~~~-~-~~~~~e~Sa~~~-~v~e~f~~l~~ 210 (301)
T 2qnr_A 155 KVNIVPVIAKADTLTLKERE-------RLKKRILD--------------EIEE-H-NIKIYHLPDAES-DEDEDFKEQTR 210 (301)
T ss_dssp TSCEEEEECCGGGSCHHHHH-------HHHHHHHH--------------HHHH-T-TCCCCCCC----------CHHHHH
T ss_pred cCCEEEEEEeCCCCCHHHHH-------HHHHHHHH--------------HHHH-c-CCeEEecCCccc-cccHHHHHHHH
Confidence 56999999999987643321 11111110 0111 2 478899999999 99999887765
Q ss_pred HH
Q psy7275 85 AG 86 (150)
Q Consensus 85 ~~ 86 (150)
.+
T Consensus 211 ~i 212 (301)
T 2qnr_A 211 LL 212 (301)
T ss_dssp HH
T ss_pred Hh
Confidence 44
No 193
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=96.29 E-value=0.0034 Score=57.07 Aligned_cols=25 Identities=20% Similarity=0.040 Sum_probs=22.4
Q ss_pred CcEEEeecCCCCCHHHHHHHHHHHH
Q psy7275 62 LKVVGFSSVSGEGTEELLQLIKLAG 86 (150)
Q Consensus 62 l~vv~VSA~TGeGideL~~~I~e~~ 86 (150)
++++..||.+|.|+++|++.|...+
T Consensus 256 ~Pv~~gSA~~~~Gv~~LLd~i~~~l 280 (691)
T 1dar_A 256 TPVFLGSALKNKGVQLLLDAVVDYL 280 (691)
T ss_dssp EEEEECBGGGTBSHHHHHHHHHHHS
T ss_pred eEEEEeecccCcCHHHHHHHHHHhC
Confidence 4789999999999999999998765
No 194
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=96.24 E-value=0.004 Score=57.82 Aligned_cols=57 Identities=14% Similarity=0.250 Sum_probs=38.8
Q ss_pred CCCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhh----cCCcEEEeecCCCCCHHHH
Q psy7275 3 DTGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFY----STLKVVGFSSVSGEGTEEL 78 (150)
Q Consensus 3 k~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy----~~l~vv~VSA~TGeGideL 78 (150)
..+.|+|+|+||+|+.+...... ..+.. +++ ...+++++||.+|.|+++|
T Consensus 215 ~~g~pvIlVlNKiDlv~~~~~~~---------~il~~-----------------~~~~l~lg~~~VV~iSA~~G~GvdeL 268 (772)
T 3zvr_A 215 PQGQRTIGVITKLDLMDEGTDAR---------DVLEN-----------------KLLPLRRGYIGVVNRSQKDIDGKKDI 268 (772)
T ss_dssp TTCSSEEEEEECTTSSCTTCCSH---------HHHTT-----------------CSSCCSSCEEECCCCCCEESSSSEEH
T ss_pred hcCCCEEEEEeCcccCCcchhhH---------HHHHH-----------------HhhhhhccCCceEEecccccccchhH
Confidence 35689999999999986543100 11110 111 1237889999999999999
Q ss_pred HHHHHHH
Q psy7275 79 LQLIKLA 85 (150)
Q Consensus 79 ~~~I~e~ 85 (150)
.++|.+.
T Consensus 269 ~eaI~~e 275 (772)
T 3zvr_A 269 TAALAAE 275 (772)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998863
No 195
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=96.18 E-value=0.017 Score=52.57 Aligned_cols=25 Identities=16% Similarity=0.098 Sum_probs=22.4
Q ss_pred CcEEEeecCCCCCHHHHHHHHHHHH
Q psy7275 62 LKVVGFSSVSGEGTEELLQLIKLAG 86 (150)
Q Consensus 62 l~vv~VSA~TGeGideL~~~I~e~~ 86 (150)
++++..||++|.|++.|++.|...+
T Consensus 262 ~Pv~~gSa~~~~Gv~~LLd~i~~~l 286 (704)
T 2rdo_7 262 ILVTCGSAFKNKGVQAMLDAVIDYL 286 (704)
T ss_pred eEEEEeecccCccHHHHHHHHHHHC
Confidence 4788999999999999999998765
No 196
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=96.08 E-value=0.016 Score=52.71 Aligned_cols=25 Identities=12% Similarity=0.058 Sum_probs=22.5
Q ss_pred CcEEEeecCCCCCHHHHHHHHHHHH
Q psy7275 62 LKVVGFSSVSGEGTEELLQLIKLAG 86 (150)
Q Consensus 62 l~vv~VSA~TGeGideL~~~I~e~~ 86 (150)
.+++..||.+|.|++.|++.|.+.+
T Consensus 254 ~Pv~~gSA~~~~Gv~~LLd~i~~~l 278 (693)
T 2xex_A 254 YPVLCGTAFKNKGVQLMLDAVIDYL 278 (693)
T ss_dssp EEEEECBTTTTBSHHHHHHHHHHHS
T ss_pred eeEEEeecccCcCHHHHHHHHHHHC
Confidence 4789999999999999999998766
No 197
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=96.00 E-value=0.021 Score=50.59 Aligned_cols=25 Identities=20% Similarity=0.146 Sum_probs=21.6
Q ss_pred CcEEEeecCCCCCHHHHHHHHHHHH
Q psy7275 62 LKVVGFSSVSGEGTEELLQLIKLAG 86 (150)
Q Consensus 62 l~vv~VSA~TGeGideL~~~I~e~~ 86 (150)
.+++..||.+|.|++.|+++|...+
T Consensus 269 ~PV~~gSA~~~~Gv~~LLd~iv~~~ 293 (548)
T 3vqt_A 269 TPVFFGSAINNFGVREMLDMFVEFA 293 (548)
T ss_dssp EEEEECBGGGTBSHHHHHHHHHHHS
T ss_pred ceeeecccccCcCHHHHHHHHHHhC
Confidence 3788889999999999999987654
No 198
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=95.97 E-value=0.0024 Score=54.94 Aligned_cols=25 Identities=8% Similarity=-0.181 Sum_probs=21.8
Q ss_pred CcEEEeecCCCCCHHHHHHHHHHHH
Q psy7275 62 LKVVGFSSVSGEGTEELLQLIKLAG 86 (150)
Q Consensus 62 l~vv~VSA~TGeGideL~~~I~e~~ 86 (150)
+.+..+||++|+|++++|..|.+.+
T Consensus 359 ~~~~~TSA~d~~nV~~vF~~v~~~I 383 (402)
T 1azs_C 359 CYPHFTCAVDTENIRRVFNDCRDII 383 (402)
T ss_dssp EEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred cEEEEEEeecCcCHHHHHHHHHHHH
Confidence 4567899999999999999988765
No 199
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=95.71 E-value=0.014 Score=47.07 Aligned_cols=60 Identities=15% Similarity=0.019 Sum_probs=38.9
Q ss_pred CCCCEEEeeecC-CCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHH
Q psy7275 4 TGFPYTELVVGI-DIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLI 82 (150)
Q Consensus 4 ~~lP~IlV~NKi-Dl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I 82 (150)
.+.|++|..||. |+.++-...+ +.+.+. |+.....-.+.++||+||+|+.+=++.+
T Consensus 161 ~gapLLVlANKqqDlp~Ams~~E-------I~e~L~----------------L~~l~R~W~Iq~csA~TGeGL~EGLdWL 217 (227)
T 3l82_B 161 SGRPLLVLSCISQGDVKRMPCFY-------LAHELH----------------LNLLNHPWLVQDTEAETLTGFLNGIEWI 217 (227)
T ss_dssp SCSCEEEEEEESSTTSCBCCHHH-------HHHHTT----------------GGGGCSCEEEEEEETTTCTTHHHHHHHH
T ss_pred CCCeEEEEeCCCcCccCCCCHHH-------HHHHcC----------------CcCCCCCEEEEEeECCCCcCHHHHHHHH
Confidence 367999999996 7754322211 222221 2222234589999999999999999888
Q ss_pred HHHH
Q psy7275 83 KLAG 86 (150)
Q Consensus 83 ~e~~ 86 (150)
.+.+
T Consensus 218 ~~~l 221 (227)
T 3l82_B 218 LEEV 221 (227)
T ss_dssp TTTT
T ss_pred HHHH
Confidence 6543
No 200
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=95.66 E-value=0.011 Score=53.11 Aligned_cols=24 Identities=21% Similarity=0.246 Sum_probs=21.1
Q ss_pred CcEEEeecCCCCCHHHHHHHHHHH
Q psy7275 62 LKVVGFSSVSGEGTEELLQLIKLA 85 (150)
Q Consensus 62 l~vv~VSA~TGeGideL~~~I~e~ 85 (150)
.+++..||.+|.|++.|+++|.+.
T Consensus 213 ~Pv~~gSa~~~~Gv~~LLd~i~~~ 236 (638)
T 3j25_A 213 FPLYHGSAKSNIGIDNLIEVITNK 236 (638)
T ss_dssp CCCCCCCSTTCCSHHHHHHHHHHS
T ss_pred ccccccccccCCCchhHhhhhhcc
Confidence 588889999999999999988653
No 201
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=95.09 E-value=0.028 Score=47.24 Aligned_cols=60 Identities=15% Similarity=0.019 Sum_probs=39.3
Q ss_pred CCCCEEEeeec-CCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHH
Q psy7275 4 TGFPYTELVVG-IDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLI 82 (150)
Q Consensus 4 ~~lP~IlV~NK-iDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I 82 (150)
.+.|++|..|| -|+.++-...+ +.+.+. |+.....-.+.++||+||+|+.+=++.+
T Consensus 246 ~~apLLVfANKkQDlp~Ams~~E-------I~e~L~----------------L~~l~r~W~Iq~csA~tGeGL~EGldWL 302 (312)
T 3l2o_B 246 SGRPLLVLSCISQGDVKRMPCFY-------LAHELH----------------LNLLNHPWLVQDTEAETLTGFLNGIEWI 302 (312)
T ss_dssp TTCCEEEEEEESSTTSCBCCHHH-------HHHHTT----------------GGGGCSCEEEEEEETTTCTTHHHHHHHH
T ss_pred CCCeEEEEeCCcccccCCCCHHH-------HHHHcC----------------CccCCCcEEEEecccCCCcCHHHHHHHH
Confidence 36799999997 48855432211 222221 2222234589999999999999999888
Q ss_pred HHHH
Q psy7275 83 KLAG 86 (150)
Q Consensus 83 ~e~~ 86 (150)
.+.+
T Consensus 303 ~~~l 306 (312)
T 3l2o_B 303 LEEV 306 (312)
T ss_dssp HHHS
T ss_pred HHHH
Confidence 7654
No 202
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=94.87 E-value=0.0038 Score=53.17 Aligned_cols=63 Identities=8% Similarity=-0.096 Sum_probs=36.5
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHH-HH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQ-LI 82 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~-~I 82 (150)
+.+|+|+|+||+|+.. .+|+..+ .+.. .. .+.++++|||.++.|+++|++ .+
T Consensus 213 ~~kP~i~v~NK~D~~~----~~~l~~l---~~~~------------------~~--~~~~vv~iSA~~e~~l~~L~~~~l 265 (397)
T 1wxq_A 213 VNKPMVIAANKADAAS----DEQIKRL---VREE------------------EK--RGYIVIPTSAAAELTLRKAAKAGF 265 (397)
T ss_dssp HHSCEEEEEECGGGSC----HHHHHHH---HHHH------------------HH--TTCEEEEECHHHHHHHHSCSSSCC
T ss_pred cCCCEEEEEeCccccc----hHHHHHH---HHHH------------------hh--cCCcEEEEeccchhhHHHHHhhhh
Confidence 3579999999999862 2343211 1111 00 135899999999999988766 44
Q ss_pred HHHHHHHHhhh
Q psy7275 83 KLAGEDYEKNY 93 (150)
Q Consensus 83 ~e~~~ey~~~y 93 (150)
.+...+....|
T Consensus 266 ~~~~p~~~~~~ 276 (397)
T 1wxq_A 266 IEYIPGASEFK 276 (397)
T ss_dssp CCSCC------
T ss_pred hhhcCCCcccc
Confidence 44443333334
No 203
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=94.81 E-value=0.017 Score=49.76 Aligned_cols=58 Identities=17% Similarity=0.296 Sum_probs=24.5
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK 83 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~ 83 (150)
.+.|+|+|+||+|+.+...... |.+.+.. .+.. .+++++.+||.++.+.++++..+.
T Consensus 166 ~~v~iIlVinK~Dll~~~ev~~-------~k~~i~~--------------~~~~--~~i~~~~~sa~~~~~v~~~~~~l~ 222 (418)
T 2qag_C 166 EKVNIIPLIAKADTLTPEECQQ-------FKKQIMK--------------EIQE--HKIKIYEFPETDDEEENKLVKKIK 222 (418)
T ss_dssp TTSEEEEEEESTTSSCHHHHHH-------HHHHHHH--------------HHHH--HTCCCCCCC---------------
T ss_pred ccCcEEEEEEcccCccHHHHHH-------HHHHHHH--------------HHHH--cCCeEEeCCCCCCcCHHHHHHHHH
Confidence 3689999999999986543221 1111110 0111 157788889999999888777666
Q ss_pred H
Q psy7275 84 L 84 (150)
Q Consensus 84 e 84 (150)
.
T Consensus 223 ~ 223 (418)
T 2qag_C 223 D 223 (418)
T ss_dssp -
T ss_pred h
Confidence 5
No 204
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=94.56 E-value=0.015 Score=48.55 Aligned_cols=26 Identities=8% Similarity=-0.113 Sum_probs=22.6
Q ss_pred CCcEEEeecCCCCCHHHHHHHHHHHH
Q psy7275 61 TLKVVGFSSVSGEGTEELLQLIKLAG 86 (150)
Q Consensus 61 ~l~vv~VSA~TGeGideL~~~I~e~~ 86 (150)
.+.+..+||+++.+++.+|.+|.+.+
T Consensus 291 ~i~~~~TsA~d~~nV~~vF~~v~~~I 316 (327)
T 3ohm_A 291 IIYSHFTCATDTENIRFVFAAVKDTI 316 (327)
T ss_dssp CEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CcEEEEEEeecCHHHHHHHHHHHHHH
Confidence 35678899999999999999998765
No 205
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=94.50 E-value=0.084 Score=47.86 Aligned_cols=25 Identities=20% Similarity=0.041 Sum_probs=21.4
Q ss_pred CcEEEeecCCCCCHHHHHHHHHHHH
Q psy7275 62 LKVVGFSSVSGEGTEELLQLIKLAG 86 (150)
Q Consensus 62 l~vv~VSA~TGeGideL~~~I~e~~ 86 (150)
.+++..||.++.|+..|++.|.+.+
T Consensus 265 ~pv~~gsa~~~~gv~~lLd~i~~~l 289 (709)
T 4fn5_A 265 VPAVCGSSFKNKGVPLVLDAVIDYL 289 (709)
T ss_dssp EEEEECBTTTTBTHHHHHHHHHHHS
T ss_pred eeeeeeecccCCchHHHHHHHHhhC
Confidence 4788899999999999998887654
No 206
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=93.71 E-value=0.01 Score=48.92 Aligned_cols=18 Identities=17% Similarity=0.281 Sum_probs=15.0
Q ss_pred CCCCEEEeeecCCCCCch
Q psy7275 4 TGFPYTELVVGIDIVNHK 21 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~ 21 (150)
.+.|+|+|+||+|+.+..
T Consensus 202 ~~~~~i~V~nK~Dl~~~~ 219 (360)
T 3t34_A 202 SGDRTFGVLTKIDLMDKG 219 (360)
T ss_dssp TCTTEEEEEECGGGCCTT
T ss_pred cCCCEEEEEeCCccCCCc
Confidence 467999999999998643
No 207
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=92.97 E-value=0.11 Score=44.25 Aligned_cols=50 Identities=24% Similarity=0.141 Sum_probs=36.2
Q ss_pred CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHH
Q psy7275 5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKL 84 (150)
Q Consensus 5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e 84 (150)
..|.|+|.||+|..+.+.. + .......++++|+.++.|++.|..++.+
T Consensus 249 ~~p~i~v~nKid~~~~eel-----------e---------------------~l~~~~~~~~is~~~e~gLd~Li~~~y~ 296 (376)
T 4a9a_A 249 YMPAIYVLNKIDSLSIEEL-----------E---------------------LLYRIPNAVPISSGQDWNLDELLQVMWD 296 (376)
T ss_dssp EECEEEEEECGGGSCHHHH-----------H---------------------HHTTSTTEEECCTTTCTTHHHHHHHHHH
T ss_pred ccceEEEEecccccCHHHH-----------H---------------------HHhcccchhhhhhhhcccchhHHHHHHH
Confidence 4599999999997543321 1 1122347889999999999999888766
Q ss_pred HH
Q psy7275 85 AG 86 (150)
Q Consensus 85 ~~ 86 (150)
.+
T Consensus 297 ~L 298 (376)
T 4a9a_A 297 RL 298 (376)
T ss_dssp HH
T ss_pred Hc
Confidence 54
No 208
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=92.50 E-value=0.15 Score=42.76 Aligned_cols=61 Identities=10% Similarity=0.084 Sum_probs=35.7
Q ss_pred CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhh------cCCcEEEeecCCCCCHHH
Q psy7275 4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFY------STLKVVGFSSVSGEGTEE 77 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy------~~l~vv~VSA~TGeGide 77 (150)
.++|+++|.||+|+.+.+...+-. ..+..+. -+++. .++.++.+||++ .++.+
T Consensus 105 ~~ipillvgNK~DL~~~~~R~~~~-------R~V~~~~-------------~~~la~~~~~~~~i~f~eTSAkd-~nV~e 163 (331)
T 3r7w_B 105 PSINIEVLIHKVDGLSEDFKVDAQ-------RDIMQRT-------------GEELLELGLDGVQVSFYLTSIFD-HSIYE 163 (331)
T ss_dssp TTCEEEEECCCCCSSCSHHHHHHH-------HHHHHHH-------------HHTTSSSSCSCCCEEEECCCSSS-SHHHH
T ss_pred CCCcEEEEEECcccCchhhhhhHH-------HHhhHHH-------------HHHHHhhcccccCceEEEeccCC-CcHHH
Confidence 468999999999998754321100 1111000 01111 146889999998 47777
Q ss_pred HHHHHHHH
Q psy7275 78 LLQLIKLA 85 (150)
Q Consensus 78 L~~~I~e~ 85 (150)
.|..|...
T Consensus 164 AFs~iv~~ 171 (331)
T 3r7w_B 164 AFSRIVQK 171 (331)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHHH
Confidence 77666543
No 209
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=92.46 E-value=0.13 Score=44.20 Aligned_cols=33 Identities=12% Similarity=-0.004 Sum_probs=28.4
Q ss_pred CcEEEeec--CCCCCHHHHHHHHHHHHHHHHhhhH
Q psy7275 62 LKVVGFSS--VSGEGTEELLQLIKLAGEDYEKNYR 94 (150)
Q Consensus 62 l~vv~VSA--~TGeGideL~~~I~e~~~ey~~~y~ 94 (150)
-.++.||+ .++.|+++|.+.|.+.+.+....|.
T Consensus 225 ~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~~~~~ 259 (413)
T 1tq4_A 225 PPIFLLSNKNVCHYDFPVLMDKLISDLPIYKRHNF 259 (413)
T ss_dssp CCEEECCTTCTTSTTHHHHHHHHHHHSCGGGHHHH
T ss_pred CcEEEEecCcCCccCHHHHHHHHHHhCccchhhHH
Confidence 47899999 7777899999999999888877775
No 210
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=92.44 E-value=0.03 Score=47.13 Aligned_cols=27 Identities=7% Similarity=-0.017 Sum_probs=23.5
Q ss_pred CCcEEEeecCCCCCHHHHHHHHHHHHH
Q psy7275 61 TLKVVGFSSVSGEGTEELLQLIKLAGE 87 (150)
Q Consensus 61 ~l~vv~VSA~TGeGideL~~~I~e~~~ 87 (150)
.+.+..+||+++.+++.+|..|.+.+-
T Consensus 301 ~iy~h~TsA~dt~nv~~vF~~v~~~Il 327 (340)
T 4fid_A 301 KVYTNPTNATDGSNIKRVFMLAVDVIM 327 (340)
T ss_dssp EEEEEEECTTCHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEEeeCcHHHHHHHHHHHHHHH
Confidence 367789999999999999999988763
No 211
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=90.15 E-value=0.13 Score=43.47 Aligned_cols=30 Identities=20% Similarity=0.096 Sum_probs=21.4
Q ss_pred CCcEEEeecCCCCCHHHHHHHHHHHHHHHHhhh
Q psy7275 61 TLKVVGFSSVSGEGTEELLQLIKLAGEDYEKNY 93 (150)
Q Consensus 61 ~l~vv~VSA~TGeGideL~~~I~e~~~ey~~~y 93 (150)
+.+++++||++++++.+|... -..+|..+|
T Consensus 235 g~~vv~iSAk~E~el~eL~~~---~~~~~l~~~ 264 (368)
T 2dby_A 235 GAEVVVVSARLEAELAELSGE---EARELLAAY 264 (368)
T ss_dssp TCEEEEECHHHHHHHHTSCHH---HHHHHHHHT
T ss_pred CCeEEEeechhHHHHHHhchH---HHHHHHHHh
Confidence 468999999999888877653 224555544
No 212
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=83.38 E-value=1.1 Score=35.00 Aligned_cols=16 Identities=0% Similarity=-0.217 Sum_probs=14.0
Q ss_pred CCEEEeeecCCCCCch
Q psy7275 6 FPYTELVVGIDIVNHK 21 (150)
Q Consensus 6 lP~IlV~NKiDl~~~~ 21 (150)
.|+|+|+||+|+.+++
T Consensus 155 ~~iivV~nK~Dl~~~~ 170 (270)
T 1h65_A 155 NKAIVALTHAQFSPPD 170 (270)
T ss_dssp GGEEEEEECCSCCCGG
T ss_pred cCEEEEEECcccCCcC
Confidence 6999999999997655
No 213
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=82.90 E-value=1.5 Score=34.07 Aligned_cols=15 Identities=0% Similarity=-0.155 Sum_probs=12.7
Q ss_pred CCEEEeeecCCCCCc
Q psy7275 6 FPYTELVVGIDIVNH 20 (150)
Q Consensus 6 lP~IlV~NKiDl~~~ 20 (150)
.|+|+|+||+|+.+.
T Consensus 152 ~~~ivv~nK~Dl~~~ 166 (262)
T 3def_A 152 CKTLLVLTHAQFSPP 166 (262)
T ss_dssp GGEEEEEECTTCCCS
T ss_pred cCEEEEEeCcccCCC
Confidence 499999999999644
No 214
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=80.65 E-value=0.57 Score=41.23 Aligned_cols=23 Identities=22% Similarity=0.198 Sum_probs=20.0
Q ss_pred cEEEeecCCCCC-HHHHHHHHHHH
Q psy7275 63 KVVGFSSVSGEG-TEELLQLIKLA 85 (150)
Q Consensus 63 ~vv~VSA~TGeG-ideL~~~I~e~ 85 (150)
+.+.+||.+|.| +++|++.+.+.
T Consensus 287 ~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 287 TQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp HHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred cceeeehhcCCCcHHHHHHHHHHH
Confidence 456789999999 99999999876
No 215
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=78.02 E-value=0.42 Score=44.32 Aligned_cols=16 Identities=6% Similarity=0.034 Sum_probs=13.7
Q ss_pred CCCCCEEEeeecCCCC
Q psy7275 3 DTGFPYTELVVGIDIV 18 (150)
Q Consensus 3 k~~lP~IlV~NKiDl~ 18 (150)
+.++|+|+|+||+|+.
T Consensus 148 ~~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 148 GERIKPVVVINKVDRA 163 (842)
T ss_dssp HTTCEEEEEEECHHHH
T ss_pred HcCCCeEEEEECCCcc
Confidence 3578999999999985
No 216
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=72.81 E-value=1.4 Score=38.71 Aligned_cols=19 Identities=11% Similarity=0.029 Sum_probs=15.6
Q ss_pred CCCCEEEeeecCCCCCchh
Q psy7275 4 TGFPYTELVVGIDIVNHKY 22 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~ 22 (150)
.+.|+|+|+||+|+.+.+.
T Consensus 217 ~~~pvilVlNK~Dl~~~~e 235 (550)
T 2qpt_A 217 HEDKIRVVLNKADMVETQQ 235 (550)
T ss_dssp CGGGEEEEEECGGGSCHHH
T ss_pred cCCCEEEEEECCCccCHHH
Confidence 4579999999999987554
No 217
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=69.79 E-value=12 Score=31.29 Aligned_cols=16 Identities=13% Similarity=-0.342 Sum_probs=13.0
Q ss_pred CCCCCEEEeeecCCCC
Q psy7275 3 DTGFPYTELVVGIDIV 18 (150)
Q Consensus 3 k~~lP~IlV~NKiDl~ 18 (150)
.+..|+|+|.||.|..
T Consensus 197 lt~KPvi~v~N~~e~~ 212 (363)
T 1jal_A 197 LTLKPTMYIANVNEDG 212 (363)
T ss_dssp STTSCEEEEEECCTTC
T ss_pred ccCCcEEEEEeccccc
Confidence 3557999999999953
No 218
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=62.53 E-value=3.8 Score=35.28 Aligned_cols=20 Identities=5% Similarity=0.112 Sum_probs=16.9
Q ss_pred CCCCEEEeeecCCCCCchhh
Q psy7275 4 TGFPYTELVVGIDIVNHKYA 23 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~~ 23 (150)
.+.|+|+|+||+|.++++..
T Consensus 175 ~~~~vI~Vi~KtD~Lt~~E~ 194 (427)
T 2qag_B 175 SKVNIIPIIAKADAISKSEL 194 (427)
T ss_dssp SCSEEEEEESCGGGSCHHHH
T ss_pred hCCCEEEEEcchhccchHHH
Confidence 57899999999999876654
No 219
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=61.75 E-value=4.1 Score=34.54 Aligned_cols=14 Identities=29% Similarity=0.038 Sum_probs=12.1
Q ss_pred CCCCCEEEeeecCC
Q psy7275 3 DTGFPYTELVVGID 16 (150)
Q Consensus 3 k~~lP~IlV~NKiD 16 (150)
.+..|++.|+||.|
T Consensus 222 lt~kp~~y~~Nv~e 235 (392)
T 1ni3_A 222 LTAKPVIYLVNMSE 235 (392)
T ss_dssp GGGSCEEEEEECCH
T ss_pred hccCceEEEEEecc
Confidence 45679999999998
No 220
>3nr7_A DNA-binding protein H-NS; dimer, oligomerisation, DNA condensation; 3.70A {Salmonella enterica subsp} PDB: 1lr1_A 1ni8_A
Probab=58.39 E-value=13 Score=25.35 Aligned_cols=48 Identities=13% Similarity=0.120 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHhhCCCCCCCCcc
Q psy7275 75 TEELLQLIKLAGEDYEKNYRVEWIRLRDEKAKSEQLEKREQHFALPTPQPLWAS 128 (150)
Q Consensus 75 ideL~~~I~e~~~ey~~~y~pe~e~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 128 (150)
++++.+.+..+++|-..++..+ .++.++.+++-+++..++..-||+|.
T Consensus 29 Lee~leKl~~VveERree~~~~------~~~~~er~~Kl~~~~e~l~~~GI~~e 76 (86)
T 3nr7_A 29 LEEMLEKLEVVVNERREEESAA------AAEVEERTRKLQQYREMLIADGIDPN 76 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHTCCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 4455555555666665555332 33334445555666677777788874
No 221
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=52.08 E-value=14 Score=32.76 Aligned_cols=50 Identities=8% Similarity=-0.171 Sum_probs=32.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHhhCCCCCC
Q psy7275 71 SGEGTEELLQLIKLAGEDYEKNYRVEWIRLRDEKAKSEQLEKREQHFALPTPQP 124 (150)
Q Consensus 71 TGeGideL~~~I~e~~~ey~~~y~pe~e~~~~~~~~~~~~~~~~~~~~l~~~~~ 124 (150)
...|+..|...+...+.+..+...|.+...-+.+ ....+++|.+|-.+..
T Consensus 291 ~~~g~~~L~~~L~~~L~~~i~~~lP~l~~~i~~~----l~~~~~el~~lg~~~~ 340 (608)
T 3szr_A 291 GKATVPCLAEKLTSELITHICKSLPLLENQIKET----HQRITEELQKYGVDIP 340 (608)
T ss_dssp CC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHTSCCCCC
T ss_pred ccccHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH----HHHHHHHHHHcCCCCC
Confidence 3578999999999999888888888765544433 3344556777766543
No 222
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=49.95 E-value=12 Score=32.24 Aligned_cols=15 Identities=13% Similarity=-0.031 Sum_probs=11.4
Q ss_pred CEEEeeecCCCCCch
Q psy7275 7 PYTELVVGIDIVNHK 21 (150)
Q Consensus 7 P~IlV~NKiDl~~~~ 21 (150)
+..+|+||+|...+.
T Consensus 241 i~gVIlTKlD~~~~g 255 (443)
T 3dm5_A 241 IGSIIVTKLDGSAKG 255 (443)
T ss_dssp TEEEEEECCSSCSSH
T ss_pred CeEEEEECCCCcccc
Confidence 456899999986544
No 223
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=48.79 E-value=1.5 Score=37.53 Aligned_cols=26 Identities=23% Similarity=0.164 Sum_probs=20.4
Q ss_pred cEEEeecCCCCC-HHHHHHHHHHHHHH
Q psy7275 63 KVVGFSSVSGEG-TEELLQLIKLAGED 88 (150)
Q Consensus 63 ~vv~VSA~TGeG-ideL~~~I~e~~~e 88 (150)
+.+++|+..|.| +..|++.+.+...+
T Consensus 285 ~~~~~s~l~g~gdi~~L~e~~~~~~~e 311 (432)
T 2v3c_C 285 PKKFISRLLGMGDLESLLEKAEDMVDE 311 (432)
T ss_dssp HHHHHHHHTCSSCSSTTSSTTTSCSCS
T ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHh
Confidence 456789999999 98888888766543
No 224
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=41.86 E-value=5.9 Score=32.24 Aligned_cols=24 Identities=17% Similarity=0.256 Sum_probs=19.8
Q ss_pred CCcEEEeecCCCCCHHHHHHHHHH
Q psy7275 61 TLKVVGFSSVSGEGTEELLQLIKL 84 (150)
Q Consensus 61 ~l~vv~VSA~TGeGideL~~~I~e 84 (150)
....+.+-..+|.|-.-|+..+..
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~ 189 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTT 189 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 346788889999999999988854
No 225
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=31.96 E-value=55 Score=27.68 Aligned_cols=14 Identities=29% Similarity=0.050 Sum_probs=11.3
Q ss_pred CCCCCEEEeeecCC
Q psy7275 3 DTGFPYTELVVGID 16 (150)
Q Consensus 3 k~~lP~IlV~NKiD 16 (150)
.+..|++.|+|+.+
T Consensus 220 lt~KPviy~~Nv~e 233 (396)
T 2ohf_A 220 LTSKPMVYLVNLSE 233 (396)
T ss_dssp GGGSCEEEEEECCH
T ss_pred HhCCceEEEEEecH
Confidence 45679999999963
No 226
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=27.80 E-value=32 Score=29.43 Aligned_cols=13 Identities=8% Similarity=0.008 Sum_probs=10.2
Q ss_pred CEEEeeecCCCCC
Q psy7275 7 PYTELVVGIDIVN 19 (150)
Q Consensus 7 P~IlV~NKiDl~~ 19 (150)
+..+|+||+|-..
T Consensus 240 ~~gVIlTKlD~~a 252 (433)
T 3kl4_A 240 IGSVIITKMDGTA 252 (433)
T ss_dssp SEEEEEECGGGCS
T ss_pred CcEEEEecccccc
Confidence 5778999999754
No 227
>1g9p_A Omega-atracotoxin-HV2A; cystine knot; NMR {Hadronyche versuta} SCOP: g.3.6.2 PDB: 1hp3_A
Probab=27.51 E-value=14 Score=22.21 Aligned_cols=14 Identities=36% Similarity=0.741 Sum_probs=12.0
Q ss_pred CCCcccCCCcccCC
Q psy7275 124 PLWASCDRGNCNLP 137 (150)
Q Consensus 124 ~~~~~~~~~~~~~~ 137 (150)
+++|+|.+|.|.-.
T Consensus 19 ~lTP~Ck~G~Cvps 32 (45)
T 1g9p_A 19 ELTPVCKRGSCVSS 32 (45)
T ss_dssp TTCCEEETTEEECC
T ss_pred cCCcccccceeecC
Confidence 79999999999743
No 228
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=26.12 E-value=20 Score=29.51 Aligned_cols=19 Identities=5% Similarity=-0.118 Sum_probs=15.3
Q ss_pred CCCCEEEeeecCCCCCchh
Q psy7275 4 TGFPYTELVVGIDIVNHKY 22 (150)
Q Consensus 4 ~~lP~IlV~NKiDl~~~~~ 22 (150)
.+.|+++|+||+|......
T Consensus 272 ~~~~~~~v~nk~d~~~~~~ 290 (368)
T 3h2y_A 272 GRRAFTCHFSNRLTIHRTK 290 (368)
T ss_dssp SSEEEEEEECTTSCEEEEE
T ss_pred CCceEEEEecCcccccccc
Confidence 4679999999999876543
No 229
>2p2u_A HOST-nuclease inhibitor protein GAM, putative; structural genomics, unknown function, PSI-2, protein structure initiative; 2.75A {Desulfovibrio vulgaris} SCOP: h.4.18.1
Probab=24.95 E-value=2.1e+02 Score=21.13 Aligned_cols=64 Identities=11% Similarity=-0.011 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH---HHhHhhCCCCCCCCcccCCCcccCCCCCCCCCCCcc
Q psy7275 77 ELLQLIKLAGEDYEKNYRVEWIRLRDEKAKSEQLEK---REQHFALPTPQPLWASCDRGNCNLPTDKVPKTKGRK 148 (150)
Q Consensus 77 eL~~~I~e~~~ey~~~y~pe~e~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (150)
++-..+...++.....|.+++..+....+.-+..=+ +.....|= + ..=++.||+|++.-.+|..
T Consensus 34 ~i~~~~n~eI~~ik~~~~~~~~~l~~~i~~l~~~l~~y~e~~r~elf---~-----k~Kt~~l~~G~v~~R~~~~ 100 (171)
T 2p2u_A 34 EIEAQMNEAIDAAKARASQKSAPLLARRKELEDGVATFATLNKTEMF---K-----DRKSLDLGFGTIGFRLSTQ 100 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHC---C--------CCBCSSCBCCCCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhc---C-----CCeEEEeCCEEEEEEeCCC
Confidence 444455555566666677766666665554433321 11112220 1 3447888888886655543
No 230
>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin assembly, protein binding; 2.55A {Homo sapiens} PDB: 2z6e_A
Probab=21.39 E-value=2.5e+02 Score=23.93 Aligned_cols=21 Identities=5% Similarity=0.018 Sum_probs=16.7
Q ss_pred CCHHHHHHHHHHHHHHHHhhh
Q psy7275 73 EGTEELLQLIKLAGEDYEKNY 93 (150)
Q Consensus 73 eGideL~~~I~e~~~ey~~~y 93 (150)
...++||..+..-+..|..-.
T Consensus 372 ~~~~~fF~~~~~F~~~f~~A~ 392 (483)
T 2j1d_G 372 IQPDEFFGIFDQFLQAVSEAK 392 (483)
T ss_dssp CCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHH
Confidence 458999999998888886654
No 231
>1v9d_A Diaphanous protein homolog 1; helix bundle, protein binding; 2.60A {Mus musculus} SCOP: a.207.1.1
Probab=21.21 E-value=2.1e+02 Score=23.07 Aligned_cols=42 Identities=12% Similarity=0.048 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHhh
Q psy7275 75 TEELLQLIKLAGEDYEKNYRVEWIRLRDEKAKSEQLEKREQHFA 118 (150)
Q Consensus 75 ideL~~~I~e~~~ey~~~y~pe~e~~~~~~~~~~~~~~~~~~~~ 118 (150)
+.+|......+..+-.. +.+.|+..+++..++++..++.++|
T Consensus 298 ~~~F~~~f~~a~~en~~--r~e~eek~~~~~~~~e~~~~~~~~~ 339 (340)
T 1v9d_A 298 LHNFRNMFLQAVKENQK--RRETEEKMRRAKLAKEKAEKERLEK 339 (340)
T ss_dssp HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhc
No 232
>2doh_C Fragment, plasminogen-binding group A streptococcal M-like PAM; lysine-binding site, kringle domains, hydrolase; HET: DIO; 2.30A {Homo sapiens} PDB: 2kj4_B 1i5k_C 2doi_C
Probab=21.10 E-value=1.2e+02 Score=16.71 Aligned_cols=21 Identities=24% Similarity=0.321 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhCCC
Q psy7275 95 VEWIRLRDEKAKSEQLEKREQHFALPT 121 (150)
Q Consensus 95 pe~e~~~~~~~~~~~~~~~~~~~~l~~ 121 (150)
.+++|+++++....+ +++|..
T Consensus 8 ~eL~rLknERh~~~e------lerl~~ 28 (30)
T 2doh_C 8 AELQRLKNERHEEAE------LERLLS 28 (30)
T ss_dssp HHHHHHHHHHHHHHH------HHHC-C
T ss_pred HHHHHHHHHHHHHHH------HHHHHh
Confidence 478888887765443 666653
No 233
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=21.06 E-value=53 Score=25.70 Aligned_cols=18 Identities=6% Similarity=0.056 Sum_probs=15.2
Q ss_pred CCEEEeeecCCCCCchhh
Q psy7275 6 FPYTELVVGIDIVNHKYA 23 (150)
Q Consensus 6 lP~IlV~NKiDl~~~~~~ 23 (150)
.|+|+|+||+|..+.+..
T Consensus 141 ~~vI~Vi~K~D~lt~~e~ 158 (270)
T 3sop_A 141 VNIIPVIAKADTMTLEEK 158 (270)
T ss_dssp SEEEEEETTGGGSCHHHH
T ss_pred CcEEEEEeccccCCHHHH
Confidence 799999999999876553
No 234
>4aq3_A Apoptosis regulator BCL-2, BCL-2-like protein 1; chimera; HET: 398; 2.40A {Homo sapiens} PDB: 1g5m_A 1gjh_A 1ysw_A* 2o21_A* 2o22_A*
Probab=20.53 E-value=91 Score=23.22 Aligned_cols=38 Identities=18% Similarity=0.448 Sum_probs=24.4
Q ss_pred EeecCCCCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q psy7275 66 GFSSVSGEGTEELLQLIKLAGEDYEKNYRVEWIRLRDE 103 (150)
Q Consensus 66 ~VSA~TGeGideL~~~I~e~~~ey~~~y~pe~e~~~~~ 103 (150)
..|+..|.+.+++...+..+.+|+++.|.+.+..+...
T Consensus 43 ~~~~~~~~~~~~v~~~Lr~igdele~~~~~~f~~~~~~ 80 (169)
T 4aq3_A 43 RTEAPEGTESEVVHLALRQAGDDFSRRYRGDFAEMSSQ 80 (169)
T ss_dssp -----------CHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred cCCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 34556678899999999999999999999988887654
Done!