RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7275
(150 letters)
>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955
{Pyrococcus abyssi [TaxId: 29292]}
Length = 244
Score = 57.7 bits (138), Expect = 2e-11
Identities = 15/86 (17%), Positives = 34/86 (39%), Gaps = 3/86 (3%)
Query: 1 MYDTGFPYTELVVGIDIVNH---KYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDE 57
G + +D+++ + ++ +D + L+ D S + M + E
Sbjct: 153 DLRLGATTIPALNKVDLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTE 212
Query: 58 FYSTLKVVGFSSVSGEGTEELLQLIK 83
++V+ S+ + EG E+L L
Sbjct: 213 VLPPVRVLYLSAKTREGFEDLETLAY 238
>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal
(G) domain {Archaeon Methanobacterium
thermoautotrophicum [TaxId: 145262]}
Length = 227
Score = 31.6 bits (70), Expect = 0.026
Identities = 18/96 (18%), Positives = 35/96 (36%), Gaps = 14/96 (14%)
Query: 15 IDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDE-------------FYST 61
ID ++ E E F + + + L E F S
Sbjct: 132 IDRIHGWRVHEGRPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQ 191
Query: 62 LKVVGFSSVSGEGTEELLQLIKLAGEDY-EKNYRVE 96
+ ++ S+++GEG ELL ++ + Y + ++E
Sbjct: 192 VSIIPISAITGEGIPELLTMLMGLAQQYLREQLKIE 227
>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli
[TaxId: 562]}
Length = 188
Score = 30.5 bits (67), Expect = 0.060
Identities = 11/63 (17%), Positives = 24/63 (38%)
Query: 20 HKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELL 79
+ + +A + S + A+ F ++V FSS+ +G ++L
Sbjct: 121 EWAVDSNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLR 180
Query: 80 QLI 82
Q +
Sbjct: 181 QKL 183
>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 186
Score = 29.3 bits (64), Expect = 0.14
Identities = 6/33 (18%), Positives = 13/33 (39%)
Query: 57 EFYSTLKVVGFSSVSGEGTEELLQLIKLAGEDY 89
F ++ S+ G + ++ + LA Y
Sbjct: 152 YFIDYSPLIFTSADKGWNIDRMIDAMNLAYASY 184
>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis
[TaxId: 1423]}
Length = 195
Score = 28.2 bits (61), Expect = 0.33
Identities = 7/27 (25%), Positives = 13/27 (48%)
Query: 57 EFYSTLKVVGFSSVSGEGTEELLQLIK 83
+++ FSS + +G +E IK
Sbjct: 164 NIDPEDELILFSSETKKGKDEAWGAIK 190
>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE
(MnmE), G domain {Escherichia coli [TaxId: 562]}
Length = 161
Score = 27.4 bits (59), Expect = 0.56
Identities = 8/31 (25%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 53 LALDEFYSTLKVVGFSSVSGEGTEELLQLIK 83
L + E ++ S+ +GEG + L +K
Sbjct: 129 LGMSEVNG-HALIRLSARTGEGVDVLRNHLK 158
>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain
{Bacillus subtilis [TaxId: 1423]}
Length = 185
Score = 26.4 bits (57), Expect = 1.4
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 57 EFYSTLKVVGFSSVSGEGTEELLQLI 82
+ V S+V+ EG ELL +
Sbjct: 142 KLTDDYPVFPISAVTREGLRELLFEV 167
>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga
maritima [TaxId: 2336]}
Length = 160
Score = 26.1 bits (56), Expect = 1.5
Identities = 8/27 (29%), Positives = 16/27 (59%)
Query: 56 DEFYSTLKVVGFSSVSGEGTEELLQLI 82
++ + +V S++ GEG E+L + I
Sbjct: 130 NKLGTDRHMVKISALKGEGLEKLEESI 156
>d1muka_ e.8.1.4 (A:) Reovirus polymerase lambda3 {Reovirus [TaxId:
10891]}
Length = 1264
Score = 26.5 bits (58), Expect = 1.7
Identities = 8/30 (26%), Positives = 15/30 (50%)
Query: 68 SSVSGEGTEELLQLIKLAGEDYEKNYRVEW 97
V+ E + L+LI GE++ Y + +
Sbjct: 745 GKVNSETIQNDLELISKYGEEFGWKYDIAY 774
>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 179
Score = 25.4 bits (54), Expect = 3.0
Identities = 3/21 (14%), Positives = 11/21 (52%)
Query: 63 KVVGFSSVSGEGTEELLQLIK 83
+V S+ +G + + +++
Sbjct: 147 DIVPISAETGLNVDTIAAIVR 167
>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 184
Score = 25.0 bits (53), Expect = 3.6
Identities = 5/19 (26%), Positives = 8/19 (42%)
Query: 64 VVGFSSVSGEGTEELLQLI 82
+ S+ G+ E L I
Sbjct: 159 FIPISAKFGDNIERLKNRI 177
>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus
thermophilus [TaxId: 274]}
Length = 178
Score = 24.7 bits (52), Expect = 4.5
Identities = 4/27 (14%), Positives = 8/27 (29%)
Query: 57 EFYSTLKVVGFSSVSGEGTEELLQLIK 83
E + S++ EL +
Sbjct: 140 ELLPEAEPRMLSALDERQVAELKADLL 166
>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 171
Score = 24.7 bits (52), Expect = 4.6
Identities = 3/21 (14%), Positives = 9/21 (42%)
Query: 63 KVVGFSSVSGEGTEELLQLIK 83
+ + S+ + +L+ I
Sbjct: 140 EPIPVSAEHNINLDTMLETII 160
>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain
{Thermus thermophilus [TaxId: 274]}
Length = 180
Score = 24.2 bits (51), Expect = 7.2
Identities = 5/20 (25%), Positives = 11/20 (55%)
Query: 64 VVGFSSVSGEGTEELLQLIK 83
V+ S+++G G L + +
Sbjct: 145 VLPVSALTGAGLPALKEALH 164
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.133 0.391
Gapped
Lambda K H
0.267 0.0635 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 570,228
Number of extensions: 24299
Number of successful extensions: 60
Number of sequences better than 10.0: 1
Number of HSP's gapped: 60
Number of HSP's successfully gapped: 18
Length of query: 150
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 72
Effective length of database: 1,336,656
Effective search space: 96239232
Effective search space used: 96239232
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (22.9 bits)