Query psy7278
Match_columns 106
No_of_seqs 103 out of 255
Neff 4.1
Searched_HMMs 46136
Date Fri Aug 16 22:35:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7278.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7278hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3057|consensus 100.0 2.3E-41 5E-46 241.8 8.0 77 26-102 36-112 (112)
2 cd00926 Cyt_c_Oxidase_VIb Cyto 100.0 6.3E-39 1.4E-43 214.5 8.2 73 28-100 3-75 (75)
3 PF02297 COX6B: Cytochrome oxi 99.9 3.9E-25 8.5E-30 146.7 5.0 61 37-97 1-75 (76)
4 PF06747 CHCH: CHCH domain; I 89.2 0.34 7.4E-06 26.9 2.0 31 48-78 1-31 (35)
5 KOG4618|consensus 84.5 1.8 3.9E-05 29.4 3.8 47 46-93 22-68 (74)
6 PF14345 GDYXXLXY: GDYXXLXY pr 58.2 4.1 9E-05 29.1 0.5 16 25-40 20-35 (144)
7 KOG4090|consensus 44.8 25 0.00054 27.0 2.9 37 44-81 114-150 (157)
8 COG4929 Uncharacterized membra 42.9 9.1 0.0002 30.1 0.3 14 25-38 35-48 (190)
9 PF05240 APOBEC_C: APOBEC-like 40.9 14 0.0003 23.6 0.9 17 40-56 21-37 (55)
10 PF08057 Ery_res_leader2: Eryt 40.7 9.4 0.0002 18.4 0.0 11 34-44 4-14 (14)
11 KOG4763|consensus 35.6 25 0.00055 24.0 1.5 20 42-61 47-66 (77)
12 PF08991 DUF1903: Domain of un 32.7 28 0.0006 22.8 1.3 30 54-84 10-39 (67)
13 PF05676 NDUF_B7: NADH-ubiquin 28.1 54 0.0012 21.5 2.1 35 43-77 17-51 (66)
14 smart00695 DUSP Domain in ubiq 27.2 65 0.0014 20.6 2.4 22 81-102 11-34 (86)
15 PF09717 CPW_WPC: Plasmodium f 27.1 14 0.00031 22.9 -0.7 21 74-99 3-23 (60)
16 COG0372 GltA Citrate synthase 27.0 53 0.0012 28.1 2.4 32 71-105 342-373 (390)
17 TIGR01492 CPW_WPC Plasmodium f 25.0 16 0.00035 23.0 -0.8 14 74-87 4-17 (62)
18 CHL00088 apcB allophycocyanin 20.8 2.1E+02 0.0045 21.4 4.3 62 32-94 66-136 (161)
19 PTZ00444 hypothetical protein; 20.4 14 0.0003 29.0 -2.1 17 71-87 96-112 (184)
No 1
>KOG3057|consensus
Probab=100.00 E-value=2.3e-41 Score=241.85 Aligned_cols=77 Identities=42% Similarity=0.844 Sum_probs=74.1
Q ss_pred cccccccCCCCCCCCCchHHHHHHHhhHhHhhhhhhcCCCchhhHHHHHHHHhcChHHHHHHHHhhhhcCCCCCCCC
Q psy7278 26 EHKQLSTCLPDPRFQQVNITNWCWTMFVDHKRCSNLLGEGRADCAIFKKCYESICPNAWVEQWEDQIENNIFPRDLT 102 (106)
Q Consensus 26 ~~~~l~Tap~DpRFPn~NQtr~Cw~~Y~dy~rC~~~~Ged~~~Ck~f~~~y~slCP~~Wve~WdeqRe~G~Fp~k~~ 102 (106)
+...|+|||+|+||||+|||+|||++|+|||||++++|+|+.+|++|+++|+||||.+||++|||||++|+|||+++
T Consensus 36 ~~~~l~tap~d~RFP~~nqtrhCf~~y~dyhrC~~~~geD~~~Ck~f~~~y~SlCP~~WV~kWdeqre~G~Fpg~~~ 112 (112)
T KOG3057|consen 36 KSKLLTTAPVDARFPNTNQTRHCFQRYVDYHRCIKAKGEDANPCKKFQKVYRSLCPGEWVEKWDEQRENGTFPGPIT 112 (112)
T ss_pred cccccccccccccCCCcchhHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHhCcHHHHHHHHHhhhcCCCCCCCC
Confidence 34569999999999999999999999999999999999999999999999999999999999999999999999985
No 2
>cd00926 Cyt_c_Oxidase_VIb Cytochrome c oxidase subunit VIb. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit VIb is one of three mammalian subunits that lacks a transmembrane region. It is located on the cytosolic side of the membrane and helps form the dimer interface with the corresponding subunit on the other monomer complex.
Probab=100.00 E-value=6.3e-39 Score=214.50 Aligned_cols=73 Identities=41% Similarity=0.927 Sum_probs=71.2
Q ss_pred cccccCCCCCCCCCchHHHHHHHhhHhHhhhhhhcCCCchhhHHHHHHHHhcChHHHHHHHHhhhhcCCCCCC
Q psy7278 28 KQLSTCLPDPRFQQVNITNWCWTMFVDHKRCSNLLGEGRADCAIFKKCYESICPNAWVEQWEDQIENNIFPRD 100 (106)
Q Consensus 28 ~~l~Tap~DpRFPn~NQtr~Cw~~Y~dy~rC~~~~Ged~~~Ck~f~~~y~slCP~~Wve~WdeqRe~G~Fp~k 100 (106)
..++|+|+||||||+|||+|||++|++||+|++++|+|+++|++|++.|+|+||++||++|+|+|++|+||++
T Consensus 3 ~~~~t~~~D~RfP~~nq~k~Cw~~y~~y~~Cl~~~ged~~~C~~~~~~~es~Cp~~Wve~w~ekR~~g~f~~~ 75 (75)
T cd00926 3 GPLTTAPFDPRFPNQNQTKHCWQRYVDYHRCIKAKGEDASPCKKFRRVYESLCPQEWLEKWDEQREEGTFPGK 75 (75)
T ss_pred ccccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhCcHHHHHHHHHHHHhCCCCCC
Confidence 4589999999999999999999999999999999999999999999999999999999999999999999985
No 3
>PF02297 COX6B: Cytochrome oxidase c subunit VIb; InterPro: IPR003213 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex that is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptide subunits. One of these subunits is the potentially haem-binding subunit, VIb, which is encoded in the nucleus []. ; GO: 0004129 cytochrome-c oxidase activity, 0005739 mitochondrion; PDB: 1OCC_U 1OCR_U 2DYS_H 3ASO_H 3AG3_U 2EIL_H 2EIJ_U 3AG2_U 3ABM_U 2EIN_U ....
Probab=99.91 E-value=3.9e-25 Score=146.67 Aligned_cols=61 Identities=33% Similarity=0.755 Sum_probs=52.6
Q ss_pred CCCCCchHHHHHHHhhHhHhhhhhhcCC---------CchhhHHHHHHHHhcChHHHHHHHHhh-----hhcCCC
Q psy7278 37 PRFQQVNITNWCWTMFVDHKRCSNLLGE---------GRADCAIFKKCYESICPNAWVEQWEDQ-----IENNIF 97 (106)
Q Consensus 37 pRFPn~NQtr~Cw~~Y~dy~rC~~~~Ge---------d~~~Ck~f~~~y~slCP~~Wve~Wdeq-----Re~G~F 97 (106)
||||++|||++||++|++||+|++.+|+ +.+.|+.+++.|+++||.+||++|+++ |++|+|
T Consensus 1 ~rfP~~~~r~~Cw~arD~y~~Cl~~~~~~~~~~~~~~~~~~C~~~~~~ye~~Cp~sWv~~f~~~R~~~~~k~~~~ 75 (76)
T PF02297_consen 1 PRFPNRNQRKKCWQARDDYFKCLDKNGEPDSEKEKKKDESACKYFRKNYESNCPSSWVKYFDEKRVYDQRKEGTL 75 (76)
T ss_dssp -TS-SSB-HHHHHHHHHHHHHHHHHHHH------TTTTGGGGHHHHHHHHHHS-HHHHHHHHHH-----HHHT--
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHHcCccccccccccchhhhHHHHHHHHHhCcHHHHHHHHHHhhHHHHHhhcc
Confidence 7999999999999999999999999999 899999999999999999999999999 555554
No 4
>PF06747 CHCH: CHCH domain; InterPro: IPR010625 A conserved motif was identified in the LOC118487 protein was called the CHCH motif. Alignment of this protein with related members showed the presence of three subgroups of proteins, which are called the S (Small), N (N-terminal extended) and C (C-terminal extended) subgroups. All three sub-groups of proteins have in common that they contain a predicted conserved [coiled coil 1]-[helix 1]-[coiled coil 2]-[helix 2] domain (CHCH domain). Within each helix of the CHCH domain, there are two cysteines present in a C-X9-C motif. The N-group contains an additional double helix domain, and each helix contains the C-X9-C motif. This family contains a number of characterised proteins: Cox19 protein - a nuclear gene of Saccharomyces cerevisiae, codes for an 11 kDa protein (Cox19p) required for expression of cytochrome oxidase. Because cox19 mutants are able to synthesise the mitochondrial and nuclear gene products of cytochrome oxidase, Cox19p probably functions post-translationally during assembly of the enzyme. Cox19p is present in the cytoplasm and mitochondria, where it exists as a soluble intermembrane protein. This dual location is similar to what was previously reported for Cox17p, a low molecular weight copper protein thought to be required for maturation of the CuA centre of subunit 2 of cytochrome oxidase. Cox19p have four conserved potential metal ligands, these are three cysteines and one histidine. Mrp10 - belongs to the class of yeast mitochondrial ribosomal proteins that are essential for translation []. Eukaryotic NADH-ubiquinone oxidoreductase 19 kDa (NDUFA8) subunit []. The CHCH domain was previously called DUF657 []. ; PDB: 2ZXT_A 3A3C_A 2L0Y_A 2K3J_A.
Probab=89.23 E-value=0.34 Score=26.90 Aligned_cols=31 Identities=16% Similarity=0.174 Sum_probs=26.2
Q ss_pred HHHhhHhHhhhhhhcCCCchhhHHHHHHHHh
Q psy7278 48 CWTMFVDHKRCSNLLGEGRADCAIFKKCYES 78 (106)
Q Consensus 48 Cw~~Y~dy~rC~~~~Ged~~~Ck~f~~~y~s 78 (106)
|-.-+..|..|++.++.+.+.|..+.+.|+.
T Consensus 1 C~~e~~~~~~Cl~~n~~~~~~C~~~~~~~~~ 31 (35)
T PF06747_consen 1 CAEEMKAYLACLKENNFDWSKCRKEFKAYKE 31 (35)
T ss_dssp THHHHHHHHHHHHCH-SSTCCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCcHHhhHHHHHHHHH
Confidence 4456778999999999999999999999985
No 5
>KOG4618|consensus
Probab=84.45 E-value=1.8 Score=29.40 Aligned_cols=47 Identities=19% Similarity=0.352 Sum_probs=41.2
Q ss_pred HHHHHhhHhHhhhhhhcCCCchhhHHHHHHHHhcChHHHHHHHHhhhh
Q psy7278 46 NWCWTMFVDHKRCSNLLGEGRADCAIFKKCYESICPNAWVEQWEDQIE 93 (106)
Q Consensus 46 r~Cw~~Y~dy~rC~~~~Ged~~~Ck~f~~~y~slCP~~Wve~WdeqRe 93 (106)
.-|...+.-=.+|+++++-|-+.|+.++.+|+ -|-..|.+.=-+.|.
T Consensus 22 nPCl~es~aSfkCLeennyDRsKCq~yFd~Yk-eCKkfwn~ar~errk 68 (74)
T KOG4618|consen 22 NPCLLESSASFKCLEENNYDRSKCQDYFDVYK-ECKKFWNEARLERRK 68 (74)
T ss_pred ChHHHHHHHHHHHHHhcCccHHHHHHHHHHHH-HHHHHHHHHHHHHhh
Confidence 45888899999999999999999999999999 798888887666654
No 6
>PF14345 GDYXXLXY: GDYXXLXY protein
Probab=58.25 E-value=4.1 Score=29.12 Aligned_cols=16 Identities=31% Similarity=0.272 Sum_probs=13.3
Q ss_pred ccccccccCCCCCCCC
Q psy7278 25 EEHKQLSTCLPDPRFQ 40 (106)
Q Consensus 25 ~~~~~l~Tap~DpRFP 40 (106)
..++.|+|+|.|||=+
T Consensus 20 G~~v~L~~~PvDPRdl 35 (144)
T PF14345_consen 20 GKEVTLKTAPVDPRDL 35 (144)
T ss_pred CCEEEEEecccCcccc
Confidence 4578899999999944
No 7
>KOG4090|consensus
Probab=44.83 E-value=25 Score=26.98 Aligned_cols=37 Identities=14% Similarity=0.341 Sum_probs=31.6
Q ss_pred HHHHHHHhhHhHhhhhhhcCCCchhhHHHHHHHHhcCh
Q psy7278 44 ITNWCWTMFVDHKRCSNLLGEGRADCAIFKKCYESICP 81 (106)
Q Consensus 44 Qtr~Cw~~Y~dy~rC~~~~Ged~~~Ck~f~~~y~slCP 81 (106)
|..-|.----.|..|+.+.|.|.+-|++|....+ -|-
T Consensus 114 ~~~~C~~e~kqF~dCa~~~~~d~slC~~f~e~Lk-~Ck 150 (157)
T KOG4090|consen 114 QQQPCFIEIKQFLDCAQNQGSDISLCEGYNEMLK-QCK 150 (157)
T ss_pred hcCchHHHHHHHHHHHHhcCcchHHHHHHHHHHH-HHH
Confidence 4567999999999999999999999999987765 443
No 8
>COG4929 Uncharacterized membrane-anchored protein [Function unknown]
Probab=42.88 E-value=9.1 Score=30.12 Aligned_cols=14 Identities=36% Similarity=0.385 Sum_probs=12.6
Q ss_pred ccccccccCCCCCC
Q psy7278 25 EEHKQLSTCLPDPR 38 (106)
Q Consensus 25 ~~~~~l~Tap~DpR 38 (106)
..++.|+|+|.|||
T Consensus 35 G~~IiLqtaPVDPR 48 (190)
T COG4929 35 GREIILQTAPVDPR 48 (190)
T ss_pred CCEEEEEeCCCChH
Confidence 56788999999999
No 9
>PF05240 APOBEC_C: APOBEC-like C-terminal domain; InterPro: IPR007904 This domain is found at the C terminus of the Apolipoprotein B mRNA editing enzyme. Apobec-1 catalyzes C to U editing of apolipoprotein B (apoB) mRNA in the mammalian intestine. C to U RNA editing of mammalian apolipoprotein B (apoB) RNA is a site-specific posttranscriptional modification in which a single cytidine is enzymatically deaminated to uridine, thereby generating a UAA stop codon in the edited mRNA. The function of this domain is currently unknown.; GO: 0008270 zinc ion binding, 0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines; PDB: 2NYT_D.
Probab=40.95 E-value=14 Score=23.59 Aligned_cols=17 Identities=29% Similarity=0.782 Sum_probs=11.2
Q ss_pred CCchHHHHHHHhhHhHh
Q psy7278 40 QQVNITNWCWTMFVDHK 56 (106)
Q Consensus 40 Pn~NQtr~Cw~~Y~dy~ 56 (106)
.+-....|||.+||++.
T Consensus 21 M~~~eF~~CW~nFV~~~ 37 (55)
T PF05240_consen 21 MTYSEFQYCWENFVDNQ 37 (55)
T ss_dssp --HHHHHHHHHHCB--T
T ss_pred cCcHHHHHHHHHHhcCC
Confidence 44467899999999976
No 10
>PF08057 Ery_res_leader2: Erythromycin resistance leader peptide; InterPro: IPR012559 This family consists of erythromycin resistance gene leader peptides. These leader peptides are involved in the transcriptional attenuation control of the synthesis of the macrolide-lincosamide -streptogramin B resistance protein. It acts as a transcriptional attenuator, in contrast to other inducible erm genes. The mRNA leader sequence can fold in either of two mutually exclusive conformations, one of which is postulated to form in the absence of induction, and to contain two rho factor-independent terminators [].; GO: 0046677 response to antibiotic
Probab=40.70 E-value=9.4 Score=18.36 Aligned_cols=11 Identities=27% Similarity=0.247 Sum_probs=7.8
Q ss_pred CCCCCCCCchH
Q psy7278 34 LPDPRFQQVNI 44 (106)
Q Consensus 34 p~DpRFPn~NQ 44 (106)
+.--|||.-||
T Consensus 4 smrlrfptlnq 14 (14)
T PF08057_consen 4 SMRLRFPTLNQ 14 (14)
T ss_pred ceeeeccccCC
Confidence 34468998886
No 11
>KOG4763|consensus
Probab=35.57 E-value=25 Score=24.04 Aligned_cols=20 Identities=15% Similarity=0.313 Sum_probs=17.2
Q ss_pred chHHHHHHHhhHhHhhhhhh
Q psy7278 42 VNITNWCWTMFVDHKRCSNL 61 (106)
Q Consensus 42 ~NQtr~Cw~~Y~dy~rC~~~ 61 (106)
.+--.||-+-|-||++|++.
T Consensus 47 s~tee~Ct~e~fDy~h~~Dh 66 (77)
T KOG4763|consen 47 SSTEEHCTGEYFDYWHCLDH 66 (77)
T ss_pred cccchhhHHHHHHHHHHHHH
Confidence 36678999999999999874
No 12
>PF08991 DUF1903: Domain of unknown function (DUF1903); InterPro: IPR009069 The mature-T-cell-proliferation (MTCP1) putative oncogene was identified for its involvement in t(X:14)(q28;q11)-associated T-cell leukaemia []. MTCP1 is alternatively spliced to produce two completely distinct proteins: the small mitochondrial protein, p8MTCP1, and the protein p13MTCP1, which shows strong homology to another oncogene product, p14TCL1. While p13MTCP1 expression appears to be restricted to mature T-cell proliferation with t(X,14) translocations, the mitochondrial p8MTCP1 is expressed at low levels in most human tissues, and is over-expressed in the proliferating T-cells. The biological function of p8MTCP1 is still unknown, but it appears to play a role in oncogenesis. The structure of p8MTCP1 reveals a disulphide-rich, irregular array of three helices [].; PDB: 2HP8_A 1EI0_A 1HP8_A.
Probab=32.73 E-value=28 Score=22.83 Aligned_cols=30 Identities=10% Similarity=0.333 Sum_probs=22.0
Q ss_pred hHhhhhhhcCCCchhhHHHHHHHHhcChHHH
Q psy7278 54 DHKRCSNLLGEGRADCAIFKKCYESICPNAW 84 (106)
Q Consensus 54 dy~rC~~~~Ged~~~Ck~f~~~y~slCP~~W 84 (106)
.-.+|+..++-+.+.|..+...|..-| ..|
T Consensus 10 ~iq~CL~~N~Yd~~kC~~~i~~l~~Cc-k~~ 39 (67)
T PF08991_consen 10 AIQKCLQRNNYDESKCQDYIDALYECC-KKF 39 (67)
T ss_dssp HHHHHHHHTTT-CCCTHHHHHHHHHHH-TTS
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHH-HHH
Confidence 457899999989999998888887433 444
No 13
>PF05676 NDUF_B7: NADH-ubiquinone oxidoreductase B18 subunit (NDUFB7); InterPro: IPR008698 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This family consists of several NADH-ubiquinone oxidoreductase B18 subunit proteins from different eukaryotic organisms. Oxidative phosphorylation is the well-characterised process in which ATP, the principal carrier of chemical energy of individual cells, is produced due to a mitochondrial proton gradient formed by the transfer of electrons from NADH and FADH2 to molecular oxygen. The oxidative phosphorylation (OXPHOS) system is located in the mitochondrial inner membrane and consists of five multi-subunit enzyme complexes and two small electron carriers: coenzyme Q10 and cytochrome C. At least 70 structural proteins involved in the formation of the whole OXPHOS system are encoded by nuclear genes, whereas 13 structural proteins are encoded by the mitochondrial genome. Deficiency of NADH ubiquinone oxidoreductase, the first enzyme complex of the mitochondrial respiratory chain, is one of the most frequent causes of Homo sapiens mitochondrial encephalomyopathies [].; GO: 0003954 NADH dehydrogenase activity, 0008137 NADH dehydrogenase (ubiquinone) activity, 0005739 mitochondrion
Probab=28.06 E-value=54 Score=21.48 Aligned_cols=35 Identities=14% Similarity=0.281 Sum_probs=28.7
Q ss_pred hHHHHHHHhhHhHhhhhhhcCCCchhhHHHHHHHH
Q psy7278 43 NITNWCWTMFVDHKRCSNLLGEGRADCAIFKKCYE 77 (106)
Q Consensus 43 NQtr~Cw~~Y~dy~rC~~~~Ged~~~Ck~f~~~y~ 77 (106)
.++-.|.-.++.|.+|.+.+-.-.-.|...+..|.
T Consensus 17 ~~RDyCAh~Li~l~kCrr~~~p~~~~C~~erH~y~ 51 (66)
T PF05676_consen 17 QYRDYCAHLLIPLNKCRRDNFPFPWKCEHERHEYE 51 (66)
T ss_pred hhhhhHHHHHHHHHHHHHhCCCCcccCCcchhhHH
Confidence 45789999999999999887665667888777776
No 14
>smart00695 DUSP Domain in ubiquitin-specific proteases.
Probab=27.20 E-value=65 Score=20.60 Aligned_cols=22 Identities=27% Similarity=0.670 Sum_probs=16.6
Q ss_pred hHHHHHHHHhhhh--cCCCCCCCC
Q psy7278 81 PNAWVEQWEDQIE--NNIFPRDLT 102 (106)
Q Consensus 81 P~~Wve~WdeqRe--~G~Fp~k~~ 102 (106)
+.+|+.+|-.--. .+..||+++
T Consensus 11 s~~W~~~~~~~~~~~~~~~pGpId 34 (86)
T smart00695 11 STRWYRQWADFVEGKDGKDPGPID 34 (86)
T ss_pred eHHHHHHHHHHhCCCCCCCCCCCC
Confidence 5789999987655 667788875
No 15
>PF09717 CPW_WPC: Plasmodium falciparum domain of unknown function (CPW_WPC); InterPro: IPR006387 This entry represents a domain of about 61 residues in length with six well-conserved cysteine residues and six well-conserved aromatic sites. The domain can be found in tandem repeats. It is named for motifs of CPxxW and (less well conserved) WPC. Its function is unknown.
Probab=27.13 E-value=14 Score=22.90 Aligned_cols=21 Identities=19% Similarity=0.620 Sum_probs=14.2
Q ss_pred HHHHhcChHHHHHHHHhhhhcCCCCC
Q psy7278 74 KCYESICPNAWVEQWEDQIENNIFPR 99 (106)
Q Consensus 74 ~~y~slCP~~Wve~WdeqRe~G~Fp~ 99 (106)
+-|.+.||..|+ +...|..-+
T Consensus 3 rdys~~CP~~W~-----~~~~~~C~a 23 (60)
T PF09717_consen 3 RDYSQPCPEGWI-----LSDDGSCIA 23 (60)
T ss_pred Cccccccccccc-----cCCCCeEcC
Confidence 457888999999 444554433
No 16
>COG0372 GltA Citrate synthase [Energy production and conversion]
Probab=26.97 E-value=53 Score=28.06 Aligned_cols=32 Identities=22% Similarity=0.651 Sum_probs=23.4
Q ss_pred HHHHHHHhcChHHHHHHHHhhhhcCCCCCCCCCCC
Q psy7278 71 IFKKCYESICPNAWVEQWEDQIENNIFPRDLTRPQ 105 (106)
Q Consensus 71 ~f~~~y~slCP~~Wve~WdeqRe~G~Fp~k~~~~~ 105 (106)
.|--.|-..=-..|+.+|-||+++| .+|-||.
T Consensus 342 ~fT~lFaiaR~~GW~AH~~Eq~~~~---~riiRPr 373 (390)
T COG0372 342 MFTPLFAIARTVGWIAHWIEQKEDG---NKIIRPR 373 (390)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHhcc---CCccCCh
Confidence 4444444445679999999999998 6777763
No 17
>TIGR01492 CPW_WPC Plasmodium falciparum CPW-WPC domain. This model represents a domain of about 61 residues in length with six well-conserved cysteine residues and six well-conserved aromatic sites. The domain can be found in tandem repeats, and is known so far only in Plasmodium falciparum. It is named for motifs of CPxxW and (less well conserved) WPC.
Probab=24.96 E-value=16 Score=23.02 Aligned_cols=14 Identities=36% Similarity=1.123 Sum_probs=11.3
Q ss_pred HHHHhcChHHHHHH
Q psy7278 74 KCYESICPNAWVEQ 87 (106)
Q Consensus 74 ~~y~slCP~~Wve~ 87 (106)
+-|.+.||..|+..
T Consensus 4 rdYs~~CP~~W~~~ 17 (62)
T TIGR01492 4 ENYSSPCPENWIQK 17 (62)
T ss_pred cccCccCCccceec
Confidence 45779999999864
No 18
>CHL00088 apcB allophycocyanin beta subunit
Probab=20.78 E-value=2.1e+02 Score=21.44 Aligned_cols=62 Identities=15% Similarity=0.068 Sum_probs=41.7
Q ss_pred cCCCCCCCCCchHHHHHHHhhHhHhhhhhh--cCCC----chhh-HHHHHHHHhc-ChHHHH-HHHHhhhhc
Q psy7278 32 TCLPDPRFQQVNITNWCWTMFVDHKRCSNL--LGEG----RADC-AIFKKCYESI-CPNAWV-EQWEDQIEN 94 (106)
Q Consensus 32 Tap~DpRFPn~NQtr~Cw~~Y~dy~rC~~~--~Ged----~~~C-k~f~~~y~sl-CP~~Wv-e~WdeqRe~ 94 (106)
+.|....+++. ....||.-+.-|-|++.- ..+| ...| .-++-.|+++ ||..|+ +....-|+.
T Consensus 66 ~~~Gg~~y~~~-r~~~C~RD~~~~LR~itYaivaGd~~~L~e~~L~GlrE~y~~Lgvp~~~~i~al~~mk~~ 136 (161)
T CHL00088 66 TRPGGNMYTTR-RYAACIRDLDYYLRYATYGMLAGDPSILDERVLNGLKETYNSLGVPIGATIQAIQAMKEV 136 (161)
T ss_pred cCCCCCccChH-HHHHHHHHHhhhccceeeeeecCCchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 34444455443 367899999999999882 2333 4456 7789999996 999987 444444443
No 19
>PTZ00444 hypothetical protein; Provisional
Probab=20.41 E-value=14 Score=28.98 Aligned_cols=17 Identities=24% Similarity=0.864 Sum_probs=14.3
Q ss_pred HHHHHHHhcChHHHHHH
Q psy7278 71 IFKKCYESICPNAWVEQ 87 (106)
Q Consensus 71 ~f~~~y~slCP~~Wve~ 87 (106)
.+++-|..+||..|++.
T Consensus 96 ~~kRDYS~~CP~GW~k~ 112 (184)
T PTZ00444 96 SYERDYSYPCPEGWTKN 112 (184)
T ss_pred cccccCCCcCCccceec
Confidence 36788999999999864
Done!