Query psy7278
Match_columns 106
No_of_seqs 103 out of 255
Neff 4.1
Searched_HMMs 29240
Date Fri Aug 16 22:35:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7278.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7278hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1v54_H AED, cytochrome C oxida 100.0 3.7E-40 1.3E-44 224.4 8.1 75 27-101 8-85 (85)
2 2lqt_A Coiled-coil-helix-coile 96.2 0.0064 2.2E-07 41.2 4.5 52 47-99 15-66 (85)
3 1ei0_A P8MTCP1; helix-turn-hel 79.8 1.4 4.7E-05 25.2 2.5 33 48-80 3-35 (38)
4 2lql_A Coiled-coil-helix-coile 65.4 3 0.0001 28.7 1.9 35 43-77 56-90 (113)
5 2lql_A Coiled-coil-helix-coile 62.4 4.4 0.00015 27.8 2.2 52 45-96 12-77 (113)
6 1hp8_A HU-P8; leukemia, cystei 55.8 8.2 0.00028 24.7 2.5 33 48-80 7-39 (68)
7 2h12_A Citrate synthase; acido 24.2 49 0.0017 27.3 2.9 28 75-104 391-418 (436)
8 2dod_A Transcription elongatio 22.7 39 0.0013 21.8 1.6 24 30-53 42-67 (82)
9 3msu_A Citrate synthase; helix 22.6 50 0.0017 27.3 2.6 32 71-104 384-415 (427)
10 1uzc_A Hypothetical protein FL 21.4 39 0.0013 21.2 1.4 24 30-53 40-66 (71)
No 1
>1v54_H AED, cytochrome C oxidase polypeptide VIB; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.51.1.1 PDB: 1oco_H* 1occ_H* 1ocz_H* 1ocr_H* 1v55_H* 2dyr_H* 2dys_H* 2eij_H* 2eik_H* 2eil_H* 2eim_H* 2ein_H* 2occ_H* 2ybb_S* 2zxw_H* 3abk_H* 3abl_H* 3abm_H* 3ag1_H* 3ag2_H* ...
Probab=100.00 E-value=3.7e-40 Score=224.37 Aligned_cols=75 Identities=32% Similarity=0.778 Sum_probs=71.7
Q ss_pred ccccccCCCCCCCCCchHHHHHHHhhHhHhhhhhh---cCCCchhhHHHHHHHHhcChHHHHHHHHhhhhcCCCCCCC
Q psy7278 27 HKQLSTCLPDPRFQQVNITNWCWTMFVDHKRCSNL---LGEGRADCAIFKKCYESICPNAWVEQWEDQIENNIFPRDL 101 (106)
Q Consensus 27 ~~~l~Tap~DpRFPn~NQtr~Cw~~Y~dy~rC~~~---~Ged~~~Ck~f~~~y~slCP~~Wve~WdeqRe~G~Fp~k~ 101 (106)
..+|+|||+||||||+|||+|||++|+|||+|+++ +|+|.++|++|++.|+|+||++||++|||||++|+|||+|
T Consensus 8 ~~~~~tap~D~rFPn~nq~k~Cw~~y~df~~C~~~l~~~ged~~~C~~~~~~y~slCP~sWVe~wdeqR~~g~f~~k~ 85 (85)
T 1v54_H 8 IKNYQTAPFDSRFPNQNQTRNCWQNYLDFHRCEKAMTAKGGDVSVCEWYRRVYKSLCPISWVSTWDDRRAEGTFPGKI 85 (85)
T ss_dssp CCCCCSCCCCTTSCSSBCHHHHHHHHHHHHHHHHHHHHHTCCGGGGHHHHHHHHHHSCHHHHHHHHHHHHHTCCCSCC
T ss_pred ccccccCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcChHHHHHHHHHHHHhCCCCCCC
Confidence 44689999999999999999999999999999666 9999999999999999999999999999999999999986
No 2
>2lqt_A Coiled-coil-helix-coiled-coil-helix domain-contai protein 7; CHCH domain, mitochondrial import, alpha-hairpin, MIA40-DEPE disulfide relay system; NMR {Homo sapiens}
Probab=96.19 E-value=0.0064 Score=41.22 Aligned_cols=52 Identities=19% Similarity=0.332 Sum_probs=48.9
Q ss_pred HHHHhhHhHhhhhhhcCCCchhhHHHHHHHHhcChHHHHHHHHhhhhcCCCCC
Q psy7278 47 WCWTMFVDHKRCSNLLGEGRADCAIFKKCYESICPNAWVEQWEDQIENNIFPR 99 (106)
Q Consensus 47 ~Cw~~Y~dy~rC~~~~Ged~~~Ck~f~~~y~slCP~~Wve~WdeqRe~G~Fp~ 99 (106)
-|......=.+|+..++.|.+.|+.|+..|+ .|=..|++.=-+.|.+|+-|.
T Consensus 15 PC~~e~~~S~kCL~~n~yDr~~C~~yF~~Yk-~CKk~W~~v~~eRRr~Gi~P~ 66 (85)
T 2lqt_A 15 PCLSESDASTRCLDENNYDRERCSTYFLRYK-NCRRFWNSIVMQRRKNGVKPF 66 (85)
T ss_dssp CCHHHHHHHHHHHHHTTTCTTTTHHHHHHHH-HHHHHHHHHHHHHHTTCCSCS
T ss_pred ccHHHHHHHHHHHHHcCccHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCCCC
Confidence 3999999999999999999999999999999 799999999999999999885
No 3
>1ei0_A P8MTCP1; helix-turn-helix, disulfide bridges, cell cycle; NMR {Synthetic} SCOP: j.77.1.1
Probab=79.76 E-value=1.4 Score=25.17 Aligned_cols=33 Identities=9% Similarity=0.197 Sum_probs=27.0
Q ss_pred HHHhhHhHhhhhhhcCCCchhhHHHHHHHHhcC
Q psy7278 48 CWTMFVDHKRCSNLLGEGRADCAIFKKCYESIC 80 (106)
Q Consensus 48 Cw~~Y~dy~rC~~~~Ged~~~Ck~f~~~y~slC 80 (106)
|-..--.+..|+..+|-|.+.|+.+...++.-|
T Consensus 3 C~~~a~a~q~CL~~n~~d~skCq~~id~l~~Cc 35 (38)
T 1ei0_A 3 CQKQAAEIQKCLQANSYLESKCQAVIQELKKCA 35 (38)
T ss_dssp SHHHHHHHHHHHHHTTTCGGGTHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHH
Confidence 334455789999999999999999999888544
No 4
>2lql_A Coiled-coil-helix-coiled-coil-helix domain-contai protein 5; CHCH domain, mitochondrial import, MIA40-dependent disulfide system; NMR {Homo sapiens}
Probab=65.38 E-value=3 Score=28.67 Aligned_cols=35 Identities=17% Similarity=0.300 Sum_probs=30.7
Q ss_pred hHHHHHHHhhHhHhhhhhhcCCCchhhHHHHHHHH
Q psy7278 43 NITNWCWTMFVDHKRCSNLLGEGRADCAIFKKCYE 77 (106)
Q Consensus 43 NQtr~Cw~~Y~dy~rC~~~~Ged~~~Ck~f~~~y~ 77 (106)
.-.++|-.-+..|+.|++.+..+...|....+.+.
T Consensus 56 ~I~~~C~~ef~~y~~CL~~n~~~~~~Cr~~~~~f~ 90 (113)
T 2lql_A 56 QIRQACAQPFEAFEECLRQNEAAVGNCAEHMRRFL 90 (113)
T ss_dssp HHHHHTHHHHHHHHHHHHHCTTCTTTCCSHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHccccHHHHHHHHHHHH
Confidence 55679999999999999999999999988877776
No 5
>2lql_A Coiled-coil-helix-coiled-coil-helix domain-contai protein 5; CHCH domain, mitochondrial import, MIA40-dependent disulfide system; NMR {Homo sapiens}
Probab=62.44 E-value=4.4 Score=27.85 Aligned_cols=52 Identities=15% Similarity=0.217 Sum_probs=38.0
Q ss_pred HHHHHHhhHhHhhhhhhcCC-C----------chhhHH---HHHHHHhcChHHHHHHHHhhhhcCC
Q psy7278 45 TNWCWTMFVDHKRCSNLLGE-G----------RADCAI---FKKCYESICPNAWVEQWEDQIENNI 96 (106)
Q Consensus 45 tr~Cw~~Y~dy~rC~~~~Ge-d----------~~~Ck~---f~~~y~slCP~~Wve~WdeqRe~G~ 96 (106)
.++|-.-..+|++|+..+.+ | .+.|-. +.+.-++-|..++-.+|.=-|.+..
T Consensus 12 ak~C~~~~~~f~~C~~~~~~~dp~~Cl~eg~~vt~Ca~~~p~~~~I~~~C~~ef~~y~~CL~~n~~ 77 (113)
T 2lql_A 12 ARYCGRELEQYGQCVAAKPESWQRDCHYLKMSIAQCTSSHPIIRQIRQACAQPFEAFEECLRQNEA 77 (113)
T ss_dssp --CCHHHHHHHHHHHHHCTTHHHHTCSHHHHHHHHHHHTCCCCHHHHHHTHHHHHHHHHHHHHCTT
T ss_pred HHHccHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHhHHHHHHHHHHHHHccc
Confidence 57899999999999876543 2 455643 4566677899999999987777654
No 6
>1hp8_A HU-P8; leukemia, cysteine motif; NMR {Homo sapiens} SCOP: a.17.1.1 PDB: 2hp8_A
Probab=55.83 E-value=8.2 Score=24.74 Aligned_cols=33 Identities=12% Similarity=0.307 Sum_probs=27.3
Q ss_pred HHHhhHhHhhhhhhcCCCchhhHHHHHHHHhcC
Q psy7278 48 CWTMFVDHKRCSNLLGEGRADCAIFKKCYESIC 80 (106)
Q Consensus 48 Cw~~Y~dy~rC~~~~Ged~~~Ck~f~~~y~slC 80 (106)
|-..=-.+..|++.+|-|.+.|+.+...|+.-|
T Consensus 7 C~~~AcaiQ~CL~~N~yd~skCq~~id~L~eCc 39 (68)
T 1hp8_A 7 CQKQACEIQKCLQANSYMESKCQAVIQELRKCC 39 (68)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 555556789999999999999999999888433
No 7
>2h12_A Citrate synthase; acidophIle, acetic acid resistance, allostery, transferase; HET: CMX; 1.85A {Acetobacter aceti}
Probab=24.16 E-value=49 Score=27.26 Aligned_cols=28 Identities=29% Similarity=0.705 Sum_probs=19.0
Q ss_pred HHHhcChHHHHHHHHhhhhcCCCCCCCCCC
Q psy7278 75 CYESICPNAWVEQWEDQIENNIFPRDLTRP 104 (106)
Q Consensus 75 ~y~slCP~~Wve~WdeqRe~G~Fp~k~~~~ 104 (106)
.|-..=-..|+.+|.||+..+. .++-||
T Consensus 391 lFaisR~~GW~AH~~Eq~~~~~--~kI~RP 418 (436)
T 2h12_A 391 LFAVARTTGWVSQWKEMIEEPG--QRISRP 418 (436)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTT--CCCCCC
T ss_pred hhhhhccccHHHHHHHHHhCCC--Cceecc
Confidence 3333334689999999999984 445554
No 8
>2dod_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=22.68 E-value=39 Score=21.81 Aligned_cols=24 Identities=21% Similarity=0.349 Sum_probs=17.7
Q ss_pred cccCCCCCCCCC--chHHHHHHHhhH
Q psy7278 30 LSTCLPDPRFQQ--VNITNWCWTMFV 53 (106)
Q Consensus 30 l~Tap~DpRFPn--~NQtr~Cw~~Y~ 53 (106)
+.-...||||-. ...++.+|..|.
T Consensus 42 ~~~i~~DpRY~aL~~~eRK~~F~~y~ 67 (82)
T 2dod_A 42 LHKIVFDPRYLLLNPKERKQVFDQYV 67 (82)
T ss_dssp HHHHHTCSGGGTSCHHHHHHHHHHHH
T ss_pred HHHHccCCccccCCHHHHHHHHHHHH
Confidence 456779999943 577788887775
No 9
>3msu_A Citrate synthase; helix bundle, APHA-beta fold, csgid, center for structural G of infectious diseases, transferase; HET: OAA; 1.84A {Francisella tularensis}
Probab=22.64 E-value=50 Score=27.26 Aligned_cols=32 Identities=19% Similarity=0.673 Sum_probs=21.3
Q ss_pred HHHHHHHhcChHHHHHHHHhhhhcCCCCCCCCCC
Q psy7278 71 IFKKCYESICPNAWVEQWEDQIENNIFPRDLTRP 104 (106)
Q Consensus 71 ~f~~~y~slCP~~Wve~WdeqRe~G~Fp~k~~~~ 104 (106)
.|.-.|-..=-..|+.+|.||+..+ ..++-||
T Consensus 384 ~ft~lFaisR~~Gw~AH~~Eq~~~p--~~rI~RP 415 (427)
T 3msu_A 384 MFTAIFALARTSGWISQWIEMVNDP--AQKIGRP 415 (427)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHCT--TCCCCCC
T ss_pred ccceehhHHhHHHHHHHHHHHHhCC--CCceeCC
Confidence 3444443344568999999999876 3566665
No 10
>1uzc_A Hypothetical protein FLJ21157; nuclear protein, structure, transcription, phosphopeptide recognition, RNA polymerase II carboxyl- terminal domain; NMR {Homo sapiens} SCOP: a.159.2.1 PDB: 2kzg_A 2lks_A 2l9v_A
Probab=21.43 E-value=39 Score=21.18 Aligned_cols=24 Identities=13% Similarity=0.445 Sum_probs=19.1
Q ss_pred cccCCCCCCC---CCchHHHHHHHhhH
Q psy7278 30 LSTCLPDPRF---QQVNITNWCWTMFV 53 (106)
Q Consensus 30 l~Tap~DpRF---Pn~NQtr~Cw~~Y~ 53 (106)
++....|||| ++...++.+|..|.
T Consensus 40 ~~~i~~DpRY~al~~~~eRk~~F~ey~ 66 (71)
T 1uzc_A 40 MKMIINDPRYSALAKLSEKKQAFNAYK 66 (71)
T ss_dssp HHHHHTSGGGGGCSSHHHHHHHHHHHH
T ss_pred HHHHccCccccccCCHHHHHHHHHHHH
Confidence 5567789999 56688899988885
Done!