RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7278
         (106 letters)



>d1v54h_ a.51.1.1 (H:) Cytochrome c oxidase subunit h {Cow (Bos
          taurus) [TaxId: 9913]}
          Length = 79

 Score = 81.0 bits (200), Expect = 2e-22
 Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 3/74 (4%)

Query: 28 KQLSTCLPDPRFQQVNITNWCWTMFVDHKRCSNLL---GEGRADCAIFKKCYESICPNAW 84
          K   T   D RF   N T  CW  ++D  RC   +   G   + C  +++ Y+S+CP +W
Sbjct: 3  KNYQTAPFDSRFPNQNQTRNCWQNYLDFHRCEKAMTAKGGDVSVCEWYRRVYKSLCPISW 62

Query: 85 VEQWEDQIENNIFP 98
          V  W+D+     FP
Sbjct: 63 VSTWDDRRAEGTFP 76


>d3bl2a1 f.1.4.1 (A:6-134) Bcl-2 homolog V-bcl-2 {Murid herpesvirus
           4 [TaxId: 33708]}
          Length = 129

 Score = 23.1 bits (49), Expect = 8.3
 Identities = 7/15 (46%), Positives = 9/15 (60%)

Query: 75  CYESICPNAWVEQWE 89
           C E +CP +W E  E
Sbjct: 94  CEEVLCPGSWTEDHE 108


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.138    0.480 

Gapped
Lambda     K      H
   0.267   0.0542    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 442,048
Number of extensions: 18919
Number of successful extensions: 39
Number of sequences better than 10.0: 1
Number of HSP's gapped: 38
Number of HSP's successfully gapped: 2
Length of query: 106
Length of database: 2,407,596
Length adjustment: 66
Effective length of query: 40
Effective length of database: 1,501,416
Effective search space: 60056640
Effective search space used: 60056640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.3 bits)