Query psy7279
Match_columns 195
No_of_seqs 257 out of 1896
Neff 8.0
Searched_HMMs 46136
Date Fri Aug 16 22:37:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7279.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7279hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4628|consensus 99.5 4.1E-15 8.9E-20 125.7 4.8 73 52-124 206-281 (348)
2 PF13639 zf-RING_2: Ring finge 99.5 1.2E-15 2.7E-20 92.6 0.4 44 74-117 1-44 (44)
3 COG5243 HRD1 HRD ubiquitin lig 99.4 3.6E-14 7.7E-19 119.4 2.7 68 55-122 269-346 (491)
4 PF12678 zf-rbx1: RING-H2 zinc 99.3 2.6E-13 5.6E-18 91.3 0.2 45 73-117 19-73 (73)
5 PHA02929 N1R/p28-like protein; 99.3 1.1E-12 2.4E-17 106.4 2.6 69 53-121 150-227 (238)
6 COG5540 RING-finger-containing 99.2 2.9E-12 6.4E-17 105.4 2.1 50 73-122 323-373 (374)
7 KOG0317|consensus 99.2 4.7E-12 1E-16 103.7 1.5 50 73-125 239-288 (293)
8 KOG0823|consensus 99.2 9.3E-12 2E-16 99.2 2.7 60 71-133 45-107 (230)
9 PLN03208 E3 ubiquitin-protein 99.1 2.8E-11 6.2E-16 94.7 3.0 54 73-129 18-87 (193)
10 PF13920 zf-C3HC4_3: Zinc fing 99.1 3.5E-11 7.6E-16 74.9 1.3 46 73-121 2-48 (50)
11 PF15227 zf-C3HC4_4: zinc fing 99.1 4.6E-11 1E-15 71.7 1.2 38 76-116 1-42 (42)
12 PF13923 zf-C3HC4_2: Zinc fing 99.0 5.6E-11 1.2E-15 70.2 0.7 39 76-116 1-39 (39)
13 KOG0320|consensus 99.0 8.2E-11 1.8E-15 90.2 0.3 52 73-125 131-182 (187)
14 PF12861 zf-Apc11: Anaphase-pr 99.0 2.7E-10 5.9E-15 77.8 1.9 50 73-122 21-83 (85)
15 smart00504 Ubox Modified RING 98.9 4.4E-10 9.6E-15 72.9 2.2 49 74-125 2-50 (63)
16 TIGR00599 rad18 DNA repair pro 98.9 4.4E-10 9.6E-15 97.4 2.4 49 72-123 25-73 (397)
17 cd00162 RING RING-finger (Real 98.9 5.1E-10 1.1E-14 66.9 1.9 44 75-120 1-45 (45)
18 PHA02926 zinc finger-like prot 98.9 3.8E-10 8.2E-15 89.6 1.3 49 73-121 170-230 (242)
19 KOG0802|consensus 98.9 3.9E-10 8.5E-15 102.2 1.3 51 73-123 291-343 (543)
20 PF14634 zf-RING_5: zinc-RING 98.9 9.5E-10 2.1E-14 66.6 1.8 44 75-118 1-44 (44)
21 PF00097 zf-C3HC4: Zinc finger 98.8 8.8E-10 1.9E-14 65.5 0.7 38 76-116 1-41 (41)
22 smart00184 RING Ring finger. E 98.7 3.6E-09 7.9E-14 61.0 1.5 38 76-116 1-39 (39)
23 KOG1734|consensus 98.7 6.4E-09 1.4E-13 84.6 1.4 58 71-128 222-288 (328)
24 COG5574 PEX10 RING-finger-cont 98.7 5.8E-09 1.2E-13 84.7 0.8 49 73-124 215-265 (271)
25 KOG2164|consensus 98.6 1.3E-08 2.8E-13 89.5 1.4 50 73-125 186-240 (513)
26 KOG0287|consensus 98.6 8.2E-09 1.8E-13 86.5 -0.5 50 73-125 23-72 (442)
27 COG5194 APC11 Component of SCF 98.5 3.9E-08 8.4E-13 65.8 2.0 31 93-123 53-83 (88)
28 KOG1493|consensus 98.5 7.7E-09 1.7E-13 68.5 -1.6 51 72-122 19-82 (84)
29 COG5432 RAD18 RING-finger-cont 98.5 2.6E-08 5.7E-13 81.9 -0.1 50 73-125 25-74 (391)
30 PF13445 zf-RING_UBOX: RING-ty 98.5 3.8E-08 8.2E-13 59.2 0.6 33 76-109 1-34 (43)
31 PF04564 U-box: U-box domain; 98.4 5.8E-08 1.3E-12 65.1 0.8 50 73-125 4-54 (73)
32 KOG0824|consensus 98.3 3.6E-07 7.8E-12 75.6 3.7 54 73-129 7-61 (324)
33 PF14835 zf-RING_6: zf-RING of 98.3 3.5E-07 7.6E-12 59.0 2.2 51 73-128 7-58 (65)
34 KOG0828|consensus 98.3 1.2E-07 2.6E-12 83.0 -0.1 50 73-122 571-635 (636)
35 PF11793 FANCL_C: FANCL C-term 98.3 1.8E-07 3.8E-12 62.3 0.5 50 73-122 2-67 (70)
36 smart00744 RINGv The RING-vari 98.3 3.4E-07 7.3E-12 56.6 1.3 42 75-117 1-49 (49)
37 COG5219 Uncharacterized conser 98.3 1.5E-07 3.1E-12 87.8 -0.8 50 72-121 1468-1523(1525)
38 KOG2177|consensus 98.2 3E-07 6.6E-12 75.6 -0.0 42 73-117 13-54 (386)
39 TIGR00570 cdk7 CDK-activating 98.2 9.2E-07 2E-11 74.2 2.3 53 73-125 3-58 (309)
40 KOG0311|consensus 98.1 1.8E-07 3.8E-12 79.0 -2.9 52 73-127 43-96 (381)
41 KOG2930|consensus 98.1 1.2E-06 2.6E-11 61.5 0.7 50 71-120 44-107 (114)
42 KOG4265|consensus 98.0 1.9E-06 4.2E-11 73.0 2.0 46 73-121 290-336 (349)
43 KOG1039|consensus 97.9 3.7E-06 8E-11 71.9 1.2 49 73-121 161-221 (344)
44 KOG0804|consensus 97.9 4.4E-06 9.6E-11 72.6 1.0 47 73-121 175-222 (493)
45 KOG0827|consensus 97.9 3.6E-06 7.7E-11 72.0 0.3 49 73-121 4-56 (465)
46 KOG4172|consensus 97.8 2.3E-06 5.1E-11 53.2 -1.6 46 73-121 7-54 (62)
47 KOG4445|consensus 97.7 6.8E-06 1.5E-10 68.2 -0.1 58 68-125 110-190 (368)
48 KOG0978|consensus 97.7 4.7E-06 1E-10 76.6 -1.2 50 73-125 643-693 (698)
49 KOG0825|consensus 97.7 4E-06 8.7E-11 77.1 -1.7 53 73-125 123-175 (1134)
50 KOG4159|consensus 97.6 2.1E-05 4.5E-10 68.6 0.5 48 72-122 83-130 (398)
51 KOG2660|consensus 97.5 2.1E-05 4.6E-10 66.1 -0.3 50 73-124 15-64 (331)
52 KOG1785|consensus 97.5 2.8E-05 6.1E-10 66.9 0.4 47 74-123 370-418 (563)
53 KOG1645|consensus 97.4 5.5E-05 1.2E-09 65.2 1.7 51 73-123 4-58 (463)
54 KOG0297|consensus 97.3 9.5E-05 2.1E-09 64.7 1.9 49 73-124 21-70 (391)
55 COG5152 Uncharacterized conser 97.2 8E-05 1.7E-09 58.5 0.3 45 73-120 196-240 (259)
56 KOG1941|consensus 97.2 0.00012 2.5E-09 63.0 0.5 49 73-121 365-416 (518)
57 KOG1002|consensus 97.1 0.00011 2.3E-09 65.5 0.1 50 71-123 534-588 (791)
58 PF11789 zf-Nse: Zinc-finger o 97.1 0.00014 3.1E-09 46.3 0.5 41 73-115 11-53 (57)
59 KOG4692|consensus 97.1 0.00023 4.9E-09 60.6 1.7 51 72-125 421-471 (489)
60 KOG1813|consensus 97.1 0.00017 3.8E-09 59.8 0.7 45 73-120 241-285 (313)
61 KOG2879|consensus 97.0 0.00058 1.3E-08 56.2 2.9 47 73-121 239-287 (298)
62 KOG1428|consensus 96.8 0.0005 1.1E-08 67.4 1.5 52 71-122 3484-3545(3738)
63 KOG0826|consensus 96.7 0.00072 1.6E-08 56.9 1.5 45 73-120 300-345 (357)
64 KOG4275|consensus 96.6 0.00047 1E-08 57.2 -0.0 42 73-121 300-342 (350)
65 PF12906 RINGv: RING-variant d 96.5 0.0011 2.5E-08 40.4 1.1 40 76-116 1-47 (47)
66 PF10367 Vps39_2: Vacuolar sor 96.5 0.0017 3.7E-08 46.0 2.2 31 73-104 78-108 (109)
67 KOG3970|consensus 96.4 0.0013 2.9E-08 52.8 1.3 49 73-122 50-106 (299)
68 PF14570 zf-RING_4: RING/Ubox 96.4 0.0013 2.9E-08 40.2 0.9 45 76-120 1-47 (48)
69 PF05883 Baculo_RING: Baculovi 96.4 0.0007 1.5E-08 50.2 -0.4 36 73-108 26-67 (134)
70 KOG4739|consensus 96.4 0.0017 3.7E-08 52.6 1.6 51 75-128 5-55 (233)
71 PHA02862 5L protein; Provision 96.3 0.0014 3.1E-08 49.1 0.7 47 73-123 2-55 (156)
72 COG5236 Uncharacterized conser 96.2 0.0026 5.5E-08 54.2 2.0 47 73-122 61-109 (493)
73 KOG0801|consensus 96.2 0.0017 3.6E-08 49.6 0.7 28 73-100 177-204 (205)
74 KOG1571|consensus 96.2 0.0033 7.1E-08 53.7 2.4 43 73-121 305-347 (355)
75 COG5222 Uncharacterized conser 96.2 0.0025 5.3E-08 53.3 1.6 50 73-125 274-326 (427)
76 PHA03096 p28-like protein; Pro 95.9 0.0021 4.6E-08 53.9 0.0 45 74-118 179-231 (284)
77 KOG3268|consensus 95.8 0.0024 5.1E-08 49.6 0.0 50 74-123 166-230 (234)
78 KOG3039|consensus 95.7 0.0056 1.2E-07 49.8 1.9 54 73-126 221-275 (303)
79 KOG2114|consensus 95.7 0.0028 6E-08 59.4 0.1 42 73-119 840-881 (933)
80 PHA02825 LAP/PHD finger-like p 95.7 0.0059 1.3E-07 46.6 1.6 48 73-124 8-62 (162)
81 KOG1814|consensus 95.7 0.0031 6.7E-08 54.8 0.1 36 73-108 184-219 (445)
82 KOG4185|consensus 95.5 0.0066 1.4E-07 51.0 1.6 47 74-120 4-54 (296)
83 PF14447 Prok-RING_4: Prokaryo 95.4 0.011 2.4E-07 37.0 1.9 45 74-123 8-52 (55)
84 KOG1952|consensus 95.3 0.0033 7.1E-08 59.0 -0.9 47 73-119 191-245 (950)
85 PF04641 Rtf2: Rtf2 RING-finge 95.1 0.014 2.9E-07 48.5 2.1 54 72-126 112-166 (260)
86 KOG2034|consensus 95.0 0.008 1.7E-07 56.7 0.7 35 72-107 816-850 (911)
87 PF08746 zf-RING-like: RING-li 94.9 0.0058 1.2E-07 36.6 -0.5 41 76-116 1-43 (43)
88 PF10272 Tmpp129: Putative tra 94.8 0.029 6.4E-07 48.5 3.5 31 94-124 311-354 (358)
89 PF03854 zf-P11: P-11 zinc fin 94.5 0.0074 1.6E-07 36.6 -0.6 44 75-123 4-48 (50)
90 COG5175 MOT2 Transcriptional r 94.3 0.016 3.6E-07 49.3 0.9 54 71-124 12-67 (480)
91 KOG1001|consensus 94.0 0.016 3.5E-07 54.1 0.2 50 74-127 455-506 (674)
92 KOG2932|consensus 94.0 0.019 4E-07 48.3 0.5 43 75-121 92-134 (389)
93 KOG1940|consensus 93.8 0.022 4.9E-07 47.4 0.6 46 73-118 158-204 (276)
94 KOG3053|consensus 93.4 0.018 3.9E-07 47.2 -0.6 50 72-121 19-82 (293)
95 KOG0827|consensus 93.3 0.0033 7.2E-08 54.2 -5.0 50 73-122 196-246 (465)
96 KOG1100|consensus 93.1 0.062 1.3E-06 43.1 2.0 40 75-121 160-200 (207)
97 PF07800 DUF1644: Protein of u 93.0 0.048 1.1E-06 41.6 1.3 53 73-128 2-98 (162)
98 PF14446 Prok-RING_1: Prokaryo 92.1 0.1 2.2E-06 32.7 1.7 31 73-103 5-36 (54)
99 KOG2817|consensus 92.0 0.079 1.7E-06 46.0 1.5 46 73-118 334-382 (394)
100 PF05290 Baculo_IE-1: Baculovi 91.7 0.052 1.1E-06 40.2 0.1 49 73-123 80-134 (140)
101 KOG0298|consensus 91.5 0.035 7.5E-07 54.5 -1.3 45 73-119 1153-1197(1394)
102 KOG4367|consensus 91.3 0.075 1.6E-06 46.8 0.6 33 73-108 4-36 (699)
103 KOG3899|consensus 90.6 0.04 8.7E-07 46.0 -1.6 32 94-125 325-369 (381)
104 KOG3002|consensus 90.0 0.18 4E-06 42.7 1.8 42 73-121 48-91 (299)
105 PF02891 zf-MIZ: MIZ/SP-RING z 88.5 0.25 5.4E-06 30.4 1.2 42 74-118 3-49 (50)
106 KOG4362|consensus 87.4 0.14 3E-06 47.7 -0.7 51 73-126 21-74 (684)
107 KOG3800|consensus 86.6 0.35 7.5E-06 40.5 1.3 48 75-122 2-52 (300)
108 KOG1812|consensus 85.7 0.2 4.3E-06 44.0 -0.6 37 73-109 146-183 (384)
109 KOG1609|consensus 85.6 0.28 6.1E-06 41.1 0.4 51 73-123 78-136 (323)
110 KOG0802|consensus 83.6 0.54 1.2E-05 43.1 1.3 47 72-125 478-524 (543)
111 COG5220 TFB3 Cdk activating ki 83.6 0.24 5.2E-06 40.4 -0.9 49 73-121 10-64 (314)
112 KOG0309|consensus 83.5 0.4 8.7E-06 45.1 0.4 39 76-115 1031-1069(1081)
113 PLN02436 cellulose synthase A 81.0 3.8 8.2E-05 40.4 5.9 50 73-122 36-90 (1094)
114 KOG1812|consensus 80.8 0.88 1.9E-05 39.9 1.5 44 73-116 306-351 (384)
115 KOG0269|consensus 80.8 1 2.2E-05 42.4 1.9 41 73-115 779-820 (839)
116 COG5183 SSM4 Protein involved 80.7 0.67 1.4E-05 44.0 0.7 56 73-129 12-74 (1175)
117 KOG0825|consensus 79.5 0.7 1.5E-05 43.7 0.5 53 73-125 96-158 (1134)
118 PLN02189 cellulose synthase 78.8 4.8 0.0001 39.6 5.8 49 73-121 34-87 (1040)
119 KOG3579|consensus 78.0 2.1 4.6E-05 35.9 2.8 36 73-109 268-305 (352)
120 PF07975 C1_4: TFIIH C1-like d 77.5 1.1 2.5E-05 27.6 0.9 42 76-117 2-50 (51)
121 PF10571 UPF0547: Uncharacteri 76.1 1.3 2.9E-05 23.4 0.8 10 75-84 2-11 (26)
122 KOG2807|consensus 76.0 2.1 4.5E-05 36.6 2.2 45 73-117 330-374 (378)
123 PLN02638 cellulose synthase A 74.3 7.5 0.00016 38.4 5.8 49 73-121 17-70 (1079)
124 KOG2068|consensus 72.1 5 0.00011 34.3 3.6 49 73-121 249-298 (327)
125 PF07191 zinc-ribbons_6: zinc- 72.1 0.64 1.4E-05 30.7 -1.3 40 74-121 2-41 (70)
126 KOG3799|consensus 71.4 1.2 2.6E-05 33.2 -0.2 50 71-120 63-117 (169)
127 KOG4718|consensus 71.2 1.6 3.4E-05 35.1 0.4 43 74-118 182-224 (235)
128 PF13901 DUF4206: Domain of un 70.3 3.4 7.4E-05 32.9 2.2 39 73-117 152-196 (202)
129 KOG2066|consensus 70.0 2.3 5E-05 40.3 1.3 43 73-116 784-830 (846)
130 KOG1829|consensus 69.1 1.2 2.6E-05 41.0 -0.7 40 73-116 511-556 (580)
131 PF00628 PHD: PHD-finger; Int 68.9 3 6.5E-05 25.1 1.3 43 75-118 1-50 (51)
132 smart00249 PHD PHD zinc finger 68.8 3.1 6.8E-05 23.8 1.3 30 75-105 1-31 (47)
133 smart00132 LIM Zinc-binding do 68.7 6.5 0.00014 21.5 2.6 37 75-120 1-37 (39)
134 TIGR00622 ssl1 transcription f 67.9 6.4 0.00014 28.5 2.9 45 73-117 55-110 (112)
135 KOG1815|consensus 66.8 1.7 3.8E-05 38.7 -0.2 35 73-109 70-104 (444)
136 COG5109 Uncharacterized conser 66.7 2.6 5.7E-05 35.9 0.9 45 73-117 336-383 (396)
137 PF01363 FYVE: FYVE zinc finge 65.7 4.2 9.1E-05 26.2 1.6 35 73-107 9-44 (69)
138 KOG3039|consensus 65.2 2.5 5.4E-05 34.8 0.4 33 73-108 43-75 (303)
139 PF00412 LIM: LIM domain; Int 64.9 5.6 0.00012 24.3 2.0 40 76-124 1-40 (58)
140 PF14569 zf-UDP: Zinc-binding 63.7 3.3 7.2E-05 27.8 0.8 50 73-122 9-63 (80)
141 PF06844 DUF1244: Protein of u 62.9 2 4.3E-05 28.0 -0.4 12 97-108 11-22 (68)
142 KOG3842|consensus 61.1 7.8 0.00017 33.1 2.7 51 73-123 341-416 (429)
143 smart00064 FYVE Protein presen 60.8 4.2 9.2E-05 26.1 0.9 36 73-108 10-46 (68)
144 PLN02195 cellulose synthase A 57.3 14 0.00031 36.2 4.0 49 73-121 6-59 (977)
145 PF04216 FdhE: Protein involve 57.2 4.4 9.5E-05 34.0 0.6 44 73-119 172-220 (290)
146 KOG3005|consensus 56.5 4.2 9E-05 33.8 0.3 48 74-121 183-243 (276)
147 PLN02400 cellulose synthase 56.1 16 0.00035 36.3 4.2 49 73-121 36-89 (1085)
148 smart00647 IBR In Between Ring 55.8 7.4 0.00016 24.2 1.4 19 88-106 39-58 (64)
149 PLN02915 cellulose synthase A 55.0 14 0.0003 36.6 3.5 49 73-121 15-68 (1044)
150 KOG0824|consensus 53.1 5.3 0.00012 33.8 0.4 46 73-121 105-151 (324)
151 KOG3161|consensus 53.0 2.9 6.4E-05 38.9 -1.2 43 73-118 11-54 (861)
152 PF13240 zinc_ribbon_2: zinc-r 50.8 6.6 0.00014 20.0 0.4 8 111-118 14-21 (23)
153 cd00065 FYVE FYVE domain; Zinc 50.6 9.5 0.00021 23.3 1.2 34 74-107 3-37 (57)
154 PF06906 DUF1272: Protein of u 49.8 19 0.00042 22.6 2.4 45 75-122 7-53 (57)
155 PF13719 zinc_ribbon_5: zinc-r 49.8 8.2 0.00018 21.9 0.7 11 75-85 4-14 (37)
156 PRK03564 formate dehydrogenase 49.6 20 0.00043 30.6 3.3 44 73-118 187-234 (309)
157 PF04710 Pellino: Pellino; In 48.2 6 0.00013 34.8 0.0 50 73-122 328-402 (416)
158 KOG0956|consensus 48.0 8.5 0.00019 36.2 1.0 49 73-121 117-182 (900)
159 PF09297 zf-NADH-PPase: NADH p 47.4 6.1 0.00013 21.6 -0.1 25 95-119 2-30 (32)
160 PF04423 Rad50_zn_hook: Rad50 46.1 8.5 0.00019 23.7 0.5 14 110-123 20-33 (54)
161 KOG1815|consensus 45.3 9 0.00019 34.2 0.7 37 73-109 226-267 (444)
162 COG4647 AcxC Acetone carboxyla 44.2 14 0.00031 27.4 1.4 23 76-101 60-82 (165)
163 PF02318 FYVE_2: FYVE-type zin 41.8 17 0.00037 26.2 1.6 46 73-119 54-103 (118)
164 PRK11088 rrmA 23S rRNA methylt 41.6 18 0.0004 29.7 2.0 25 74-98 3-27 (272)
165 PF01485 IBR: IBR domain; Int 40.7 11 0.00023 23.4 0.3 32 75-106 20-58 (64)
166 PF10497 zf-4CXXC_R1: Zinc-fin 38.5 26 0.00056 24.9 2.0 27 95-121 37-72 (105)
167 KOG2231|consensus 38.4 24 0.00051 33.3 2.3 50 75-127 2-58 (669)
168 TIGR01562 FdhE formate dehydro 38.4 29 0.00063 29.6 2.7 46 73-119 184-233 (305)
169 KOG2071|consensus 38.3 25 0.00054 32.5 2.4 36 71-106 511-556 (579)
170 COG2816 NPY1 NTP pyrophosphohy 38.1 15 0.00032 30.9 0.9 29 94-122 109-141 (279)
171 KOG2041|consensus 37.4 37 0.00079 32.6 3.3 44 73-120 1131-1184(1189)
172 KOG1729|consensus 37.4 8.3 0.00018 32.6 -0.7 36 75-110 216-251 (288)
173 PF05715 zf-piccolo: Piccolo Z 36.1 25 0.00054 22.4 1.4 13 110-122 2-14 (61)
174 COG3492 Uncharacterized protei 35.8 8 0.00017 26.8 -0.9 13 97-109 42-54 (104)
175 PF13717 zinc_ribbon_4: zinc-r 35.7 17 0.00037 20.5 0.6 11 75-85 4-14 (36)
176 KOG4185|consensus 35.3 5.4 0.00012 33.3 -2.2 47 73-119 207-265 (296)
177 KOG2113|consensus 34.6 26 0.00056 30.0 1.7 42 73-119 343-385 (394)
178 COG4847 Uncharacterized protei 34.5 18 0.00039 25.3 0.7 33 73-106 6-38 (103)
179 PF12660 zf-TFIIIC: Putative z 34.0 19 0.00042 25.2 0.8 51 73-124 14-69 (99)
180 cd00350 rubredoxin_like Rubred 33.9 29 0.00063 19.0 1.4 9 110-118 17-25 (33)
181 KOG4218|consensus 32.6 30 0.00066 30.0 1.9 50 70-120 12-77 (475)
182 KOG3113|consensus 32.1 26 0.00057 29.1 1.3 55 73-129 111-166 (293)
183 PF09723 Zn-ribbon_8: Zinc rib 32.0 17 0.00037 21.2 0.2 26 92-118 9-34 (42)
184 PF06750 DiS_P_DiS: Bacterial 30.2 39 0.00084 23.3 1.8 20 103-122 51-70 (92)
185 PF13771 zf-HC5HC2H: PHD-like 29.2 23 0.00049 23.8 0.5 31 73-105 36-68 (90)
186 PF14311 DUF4379: Domain of un 29.2 28 0.0006 21.4 0.8 22 94-116 34-55 (55)
187 KOG1973|consensus 28.5 18 0.00038 30.3 -0.2 27 94-120 240-269 (274)
188 COG3813 Uncharacterized protei 28.0 40 0.00086 22.4 1.4 44 76-122 8-53 (84)
189 cd04718 BAH_plant_2 BAH, or Br 28.0 45 0.00098 25.3 1.9 28 98-125 2-33 (148)
190 PF13832 zf-HC5HC2H_2: PHD-zin 27.1 36 0.00078 23.8 1.2 31 73-105 55-87 (110)
191 PF07649 C1_3: C1-like domain; 26.5 19 0.00041 19.2 -0.2 29 75-103 2-30 (30)
192 smart00546 CUE Domain that may 26.2 66 0.0014 18.4 2.1 17 157-173 2-18 (43)
193 PLN02248 cellulose synthase-li 25.9 39 0.00085 33.8 1.6 37 89-125 145-181 (1135)
194 KOG1356|consensus 25.4 30 0.00065 33.4 0.7 49 73-122 229-283 (889)
195 PF06937 EURL: EURL protein; 25.0 33 0.00071 28.7 0.8 44 73-116 30-76 (285)
196 PF07282 OrfB_Zn_ribbon: Putat 24.9 1.1E+02 0.0024 19.3 3.2 29 73-101 28-59 (69)
197 PF10083 DUF2321: Uncharacteri 24.7 23 0.00049 27.1 -0.2 45 77-124 8-53 (158)
198 KOG1245|consensus 24.6 18 0.00039 37.1 -0.9 48 73-120 1108-1159(1404)
199 PF09237 GAGA: GAGA factor; I 23.9 28 0.0006 21.6 0.1 10 111-120 25-34 (54)
200 PF09943 DUF2175: Uncharacteri 23.0 38 0.00083 24.0 0.7 31 75-106 4-34 (101)
201 PF14353 CpXC: CpXC protein 22.9 50 0.0011 23.9 1.3 12 111-122 39-50 (128)
202 PF00130 C1_1: Phorbol esters/ 22.3 48 0.001 19.8 1.0 33 73-105 11-45 (53)
203 KOG3726|consensus 21.8 35 0.00077 32.2 0.4 41 73-116 654-695 (717)
204 PF02845 CUE: CUE domain; Int 21.7 92 0.002 17.8 2.1 16 158-173 2-17 (42)
205 TIGR02652 conserved hypothetic 21.7 32 0.0007 25.9 0.1 16 111-126 10-25 (163)
206 PF09654 DUF2396: Protein of u 21.4 34 0.00073 25.8 0.2 16 111-126 7-22 (161)
207 PRK05978 hypothetical protein; 20.7 64 0.0014 24.5 1.5 20 105-124 47-66 (148)
208 PF12773 DZR: Double zinc ribb 20.6 87 0.0019 18.4 1.9 24 97-120 13-39 (50)
209 PF14169 YdjO: Cold-inducible 20.5 51 0.0011 21.0 0.8 30 89-122 16-51 (59)
210 KOG2789|consensus 20.1 69 0.0015 28.4 1.8 33 73-106 74-106 (482)
211 KOG1701|consensus 20.1 17 0.00037 32.3 -1.8 10 94-103 352-361 (468)
No 1
>KOG4628|consensus
Probab=99.54 E-value=4.1e-15 Score=125.71 Aligned_cols=73 Identities=30% Similarity=0.863 Sum_probs=62.0
Q ss_pred CCCHHHHcCCCceecCCCCCC--CCccccccccccCCCceEEeCCCCccCccChhhhhccC-ccccccccccccCC
Q psy7279 52 PFSTRRFGQIPSIAFPADEAP--AAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRER-QHCPLCRNAVSVGS 124 (195)
Q Consensus 52 ~~s~~~~~~l~~~~~~~~~~~--~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~-~~CP~Cr~~~~~~~ 124 (195)
.+.+..++.+|...+...... ...|+||+|+|..|+..+.|||+|.||..||..||... ..||+||..+....
T Consensus 206 r~~k~~l~~~p~~~f~~~~~~~~~~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~~~ 281 (348)
T KOG4628|consen 206 RLIKRLLKKLPVRTFTKGDDEDATDTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRTDS 281 (348)
T ss_pred hhHHHHHhhCCcEEeccccccCCCceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCCCCC
Confidence 458888999998888776553 23899999999999999999999999999999999886 45999999776543
No 2
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.53 E-value=1.2e-15 Score=92.62 Aligned_cols=44 Identities=45% Similarity=1.178 Sum_probs=40.1
Q ss_pred CccccccccccCCCceEEeCCCCccCccChhhhhccCccccccc
Q psy7279 74 AQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQHCPLCR 117 (195)
Q Consensus 74 ~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr 117 (195)
+.|+||++.+..++.++.++|+|.||..||..|++.+.+||+||
T Consensus 1 d~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCCcCCccC
Confidence 36999999998888999999999999999999999999999997
No 3
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=3.6e-14 Score=119.40 Aligned_cols=68 Identities=29% Similarity=0.652 Sum_probs=51.2
Q ss_pred HHHHcCCCceecCCCCCCCCccccccccc-cCC---------CceEEeCCCCccCccChhhhhccCcccccccccccc
Q psy7279 55 TRRFGQIPSIAFPADEAPAAQCVICLAPF-QPG---------EEVKELLCHHKFHSECLEPWLRERQHCPLCRNAVSV 122 (195)
Q Consensus 55 ~~~~~~l~~~~~~~~~~~~~~C~IC~~~~-~~~---------~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 122 (195)
++.-+-+++.........|..|.||++++ ..+ ..+..+||||.||..|++.|++++++||+||.++--
T Consensus 269 kdl~~~~~t~t~eql~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQTCPICr~p~if 346 (491)
T COG5243 269 KDLNAMYPTATEEQLTNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPICRRPVIF 346 (491)
T ss_pred hHHHhhcchhhhhhhcCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhccCCCcccCcccc
Confidence 33434445444444444588999999994 432 256899999999999999999999999999999643
No 4
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=99.32 E-value=2.6e-13 Score=91.25 Aligned_cols=45 Identities=36% Similarity=0.906 Sum_probs=36.0
Q ss_pred CCccccccccccCC----------CceEEeCCCCccCccChhhhhccCccccccc
Q psy7279 73 AAQCVICLAPFQPG----------EEVKELLCHHKFHSECLEPWLRERQHCPLCR 117 (195)
Q Consensus 73 ~~~C~IC~~~~~~~----------~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr 117 (195)
++.|+||++.+... -.+...+|+|.||..||.+|++.+.+||+||
T Consensus 19 ~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 19 DDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp CSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred CCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence 55699999999321 2345557999999999999999999999997
No 5
>PHA02929 N1R/p28-like protein; Provisional
Probab=99.29 E-value=1.1e-12 Score=106.45 Aligned_cols=69 Identities=26% Similarity=0.586 Sum_probs=52.1
Q ss_pred CCHHHHcCCCceecCCCC----CCCCccccccccccCCCc-----eEEeCCCCccCccChhhhhccCccccccccccc
Q psy7279 53 FSTRRFGQIPSIAFPADE----APAAQCVICLAPFQPGEE-----VKELLCHHKFHSECLEPWLRERQHCPLCRNAVS 121 (195)
Q Consensus 53 ~s~~~~~~l~~~~~~~~~----~~~~~C~IC~~~~~~~~~-----~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 121 (195)
.++..+..+|.....-+. ..+..|+||++.+..+.. .+.++|+|.||..||..|+..+.+||+||..+.
T Consensus 150 ~~~~~i~~lp~vl~~~e~~~~~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~ 227 (238)
T PHA02929 150 NYKKFLKTIPSVLSEYEKLYNRSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFI 227 (238)
T ss_pred hhHHHHHhcchhhhhhhhhhcCCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEee
Confidence 367777788876543221 236799999998764321 234469999999999999999999999999875
No 6
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=2.9e-12 Score=105.42 Aligned_cols=50 Identities=34% Similarity=0.986 Sum_probs=45.9
Q ss_pred CCccccccccccCCCceEEeCCCCccCccChhhhhc-cCcccccccccccc
Q psy7279 73 AAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLR-ERQHCPLCRNAVSV 122 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~-~~~~CP~Cr~~~~~ 122 (195)
.-+|+||++.|..++..+.+||.|.||..|+.+|+. .+..||+||..+++
T Consensus 323 GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 323 GVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred CceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCCC
Confidence 568999999999888999999999999999999998 57789999999875
No 7
>KOG0317|consensus
Probab=99.19 E-value=4.7e-12 Score=103.69 Aligned_cols=50 Identities=28% Similarity=0.737 Sum_probs=45.1
Q ss_pred CCccccccccccCCCceEEeCCCCccCccChhhhhccCccccccccccccCCC
Q psy7279 73 AAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQHCPLCRNAVSVGSI 125 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~~~~ 125 (195)
...|.+||+... .+..+||||+||+.||..|...+..||+||..+.+.+.
T Consensus 239 ~~kC~LCLe~~~---~pSaTpCGHiFCWsCI~~w~~ek~eCPlCR~~~~pskv 288 (293)
T KOG0317|consen 239 TRKCSLCLENRS---NPSATPCGHIFCWSCILEWCSEKAECPLCREKFQPSKV 288 (293)
T ss_pred CCceEEEecCCC---CCCcCcCcchHHHHHHHHHHccccCCCcccccCCCcce
Confidence 578999999877 88899999999999999999999999999999876543
No 8
>KOG0823|consensus
Probab=99.18 E-value=9.3e-12 Score=99.19 Aligned_cols=60 Identities=30% Similarity=0.652 Sum_probs=49.2
Q ss_pred CCCCccccccccccCCCceEEeCCCCccCccChhhhhcc---CccccccccccccCCCCCCCCCCC
Q psy7279 71 APAAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRE---RQHCPLCRNAVSVGSISSENGSSW 133 (195)
Q Consensus 71 ~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~---~~~CP~Cr~~~~~~~~~~~~~~~~ 133 (195)
....+|.|||+.-+ +++++.|||.||+.||.+|+.. .+.||+||..+..+....-++...
T Consensus 45 ~~~FdCNICLd~ak---dPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlYGrG~ 107 (230)
T KOG0823|consen 45 GGFFDCNICLDLAK---DPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLYGRGS 107 (230)
T ss_pred CCceeeeeeccccC---CCEEeecccceehHHHHHHHhhcCCCeeCCccccccccceEEeeeccCC
Confidence 33779999999877 7888889999999999999975 457999999998777666555443
No 9
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.13 E-value=2.8e-11 Score=94.72 Aligned_cols=54 Identities=28% Similarity=0.669 Sum_probs=44.2
Q ss_pred CCccccccccccCCCceEEeCCCCccCccChhhhhcc----------------CccccccccccccCCCCCCC
Q psy7279 73 AAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRE----------------RQHCPLCRNAVSVGSISSEN 129 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~----------------~~~CP~Cr~~~~~~~~~~~~ 129 (195)
+..|+||++.+. .++.++|+|.||+.||..|+.. ...||+||..+....+....
T Consensus 18 ~~~CpICld~~~---dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiy 87 (193)
T PLN03208 18 DFDCNICLDQVR---DPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIY 87 (193)
T ss_pred ccCCccCCCcCC---CcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEee
Confidence 678999999987 7788899999999999999842 24799999999765554433
No 10
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=99.08 E-value=3.5e-11 Score=74.89 Aligned_cols=46 Identities=35% Similarity=0.860 Sum_probs=40.3
Q ss_pred CCccccccccccCCCceEEeCCCCc-cCccChhhhhccCccccccccccc
Q psy7279 73 AAQCVICLAPFQPGEEVKELLCHHK-FHSECLEPWLRERQHCPLCRNAVS 121 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l~C~H~-Fh~~Ci~~wl~~~~~CP~Cr~~~~ 121 (195)
+..|.||++... .+..+||+|. ||..|+.+|++....||+||+++.
T Consensus 2 ~~~C~iC~~~~~---~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 2 DEECPICFENPR---DVVLLPCGHLCFCEECAERLLKRKKKCPICRQPIE 48 (50)
T ss_dssp HSB-TTTSSSBS---SEEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-S
T ss_pred cCCCccCCccCC---ceEEeCCCChHHHHHHhHHhcccCCCCCcCChhhc
Confidence 457999999877 7889999999 999999999999999999999874
No 11
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=99.06 E-value=4.6e-11 Score=71.67 Aligned_cols=38 Identities=42% Similarity=0.923 Sum_probs=30.4
Q ss_pred cccccccccCCCceEEeCCCCccCccChhhhhccC----cccccc
Q psy7279 76 CVICLAPFQPGEEVKELLCHHKFHSECLEPWLRER----QHCPLC 116 (195)
Q Consensus 76 C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~----~~CP~C 116 (195)
|+||++.|. +++.++|||.||..||.+|++.. ..||.|
T Consensus 1 CpiC~~~~~---~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFK---DPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-S---SEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhC---CccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 899999999 99999999999999999999753 369987
No 12
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=99.03 E-value=5.6e-11 Score=70.15 Aligned_cols=39 Identities=38% Similarity=0.991 Sum_probs=32.7
Q ss_pred cccccccccCCCceEEeCCCCccCccChhhhhccCcccccc
Q psy7279 76 CVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQHCPLC 116 (195)
Q Consensus 76 C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~C 116 (195)
|+||++.+. +..+.++|||.||..|+.+|++.+..||+|
T Consensus 1 C~iC~~~~~--~~~~~~~CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELR--DPVVVTPCGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-S--SEEEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCccc--CcCEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence 899999988 233678899999999999999988899998
No 13
>KOG0320|consensus
Probab=98.99 E-value=8.2e-11 Score=90.23 Aligned_cols=52 Identities=27% Similarity=0.643 Sum_probs=43.8
Q ss_pred CCccccccccccCCCceEEeCCCCccCccChhhhhccCccccccccccccCCC
Q psy7279 73 AAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQHCPLCRNAVSVGSI 125 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~~~~ 125 (195)
-..|+|||+.+... .++.+.|||+||..||+..++....||+|++.+..+.+
T Consensus 131 ~~~CPiCl~~~sek-~~vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~k~~ 182 (187)
T KOG0320|consen 131 TYKCPICLDSVSEK-VPVSTKCGHVFCSQCIKDALKNTNKCPTCRKKITHKQF 182 (187)
T ss_pred ccCCCceecchhhc-cccccccchhHHHHHHHHHHHhCCCCCCcccccchhhh
Confidence 56899999998843 33557899999999999999999999999998766543
No 14
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=98.95 E-value=2.7e-10 Score=77.76 Aligned_cols=50 Identities=36% Similarity=0.922 Sum_probs=38.3
Q ss_pred CCcccccccccc--------CCC--ceEEeCCCCccCccChhhhhcc---Ccccccccccccc
Q psy7279 73 AAQCVICLAPFQ--------PGE--EVKELLCHHKFHSECLEPWLRE---RQHCPLCRNAVSV 122 (195)
Q Consensus 73 ~~~C~IC~~~~~--------~~~--~~~~l~C~H~Fh~~Ci~~wl~~---~~~CP~Cr~~~~~ 122 (195)
++.|.||+..|. .|+ ..+.-.|+|.||..||.+|+.. +..||+||+++..
T Consensus 21 dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~ 83 (85)
T PF12861_consen 21 DDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWKF 83 (85)
T ss_pred CCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeeee
Confidence 778999998886 121 2233359999999999999975 4689999998743
No 15
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.93 E-value=4.4e-10 Score=72.90 Aligned_cols=49 Identities=16% Similarity=0.344 Sum_probs=42.7
Q ss_pred CccccccccccCCCceEEeCCCCccCccChhhhhccCccccccccccccCCC
Q psy7279 74 AQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQHCPLCRNAVSVGSI 125 (195)
Q Consensus 74 ~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~~~~ 125 (195)
..|+||++.+. .++.++|||+|++.||.+|++.+.+||+|+..+...++
T Consensus 2 ~~Cpi~~~~~~---~Pv~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~~~~l 50 (63)
T smart00504 2 FLCPISLEVMK---DPVILPSGQTYERRAIEKWLLSHGTDPVTGQPLTHEDL 50 (63)
T ss_pred cCCcCCCCcCC---CCEECCCCCEEeHHHHHHHHHHCCCCCCCcCCCChhhc
Confidence 47999999988 67888999999999999999888899999988754443
No 16
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.92 E-value=4.4e-10 Score=97.41 Aligned_cols=49 Identities=31% Similarity=0.635 Sum_probs=43.3
Q ss_pred CCCccccccccccCCCceEEeCCCCccCccChhhhhccCccccccccccccC
Q psy7279 72 PAAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQHCPLCRNAVSVG 123 (195)
Q Consensus 72 ~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 123 (195)
....|+||++.|. .++.++|+|.||..||..|+.....||+||..+...
T Consensus 25 ~~l~C~IC~d~~~---~PvitpCgH~FCs~CI~~~l~~~~~CP~Cr~~~~~~ 73 (397)
T TIGR00599 25 TSLRCHICKDFFD---VPVLTSCSHTFCSLCIRRCLSNQPKCPLCRAEDQES 73 (397)
T ss_pred cccCCCcCchhhh---CccCCCCCCchhHHHHHHHHhCCCCCCCCCCccccc
Confidence 3679999999998 677889999999999999998888899999987644
No 17
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.91 E-value=5.1e-10 Score=66.95 Aligned_cols=44 Identities=43% Similarity=1.109 Sum_probs=36.1
Q ss_pred ccccccccccCCCceEEeCCCCccCccChhhhhcc-Ccccccccccc
Q psy7279 75 QCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRE-RQHCPLCRNAV 120 (195)
Q Consensus 75 ~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~-~~~CP~Cr~~~ 120 (195)
.|+||++.+. +.....+|+|.||..|+..|+.. ...||.||..+
T Consensus 1 ~C~iC~~~~~--~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFR--EPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhh--CceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 4999999984 34444559999999999999987 77899998753
No 18
>PHA02926 zinc finger-like protein; Provisional
Probab=98.91 E-value=3.8e-10 Score=89.65 Aligned_cols=49 Identities=31% Similarity=0.757 Sum_probs=37.6
Q ss_pred CCccccccccccCC-----CceEEe-CCCCccCccChhhhhccC------ccccccccccc
Q psy7279 73 AAQCVICLAPFQPG-----EEVKEL-LCHHKFHSECLEPWLRER------QHCPLCRNAVS 121 (195)
Q Consensus 73 ~~~C~IC~~~~~~~-----~~~~~l-~C~H~Fh~~Ci~~wl~~~------~~CP~Cr~~~~ 121 (195)
+.+|+||+|..-.+ .....| +|+|.||..||..|...+ .+||+||..+.
T Consensus 170 E~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~ 230 (242)
T PHA02926 170 EKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR 230 (242)
T ss_pred CCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence 77999999976422 123344 599999999999999753 45999999875
No 19
>KOG0802|consensus
Probab=98.89 E-value=3.9e-10 Score=102.23 Aligned_cols=51 Identities=37% Similarity=0.909 Sum_probs=44.4
Q ss_pred CCccccccccccCCCc--eEEeCCCCccCccChhhhhccCccccccccccccC
Q psy7279 73 AAQCVICLAPFQPGEE--VKELLCHHKFHSECLEPWLRERQHCPLCRNAVSVG 123 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~--~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 123 (195)
+..|+||+|.+..+.. +..++|+|+||..|+..|+++..+||+||..+...
T Consensus 291 ~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~qtCP~CR~~~~~~ 343 (543)
T KOG0802|consen 291 DELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQTCPTCRTVLYDY 343 (543)
T ss_pred CCeeeeechhhccccccccceeecccchHHHHHHHHHHHhCcCCcchhhhhcc
Confidence 7799999999985433 78999999999999999999999999999955433
No 20
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.86 E-value=9.5e-10 Score=66.60 Aligned_cols=44 Identities=27% Similarity=0.752 Sum_probs=38.1
Q ss_pred ccccccccccCCCceEEeCCCCccCccChhhhhccCcccccccc
Q psy7279 75 QCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQHCPLCRN 118 (195)
Q Consensus 75 ~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~ 118 (195)
.|.||++.|.....+..++|+|+||..|+..+......||+||+
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 49999999955567888899999999999998866778999984
No 21
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.83 E-value=8.8e-10 Score=65.54 Aligned_cols=38 Identities=47% Similarity=1.179 Sum_probs=33.1
Q ss_pred cccccccccCCCceE-EeCCCCccCccChhhhhc--cCcccccc
Q psy7279 76 CVICLAPFQPGEEVK-ELLCHHKFHSECLEPWLR--ERQHCPLC 116 (195)
Q Consensus 76 C~IC~~~~~~~~~~~-~l~C~H~Fh~~Ci~~wl~--~~~~CP~C 116 (195)
|+||++.+. .+. .++|+|.||..|+.+|++ ....||+|
T Consensus 1 C~iC~~~~~---~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFE---DPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCS---SEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCcccc---CCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999988 444 788999999999999998 46679988
No 22
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.74 E-value=3.6e-09 Score=61.02 Aligned_cols=38 Identities=37% Similarity=1.064 Sum_probs=33.3
Q ss_pred cccccccccCCCceEEeCCCCccCccChhhhhc-cCcccccc
Q psy7279 76 CVICLAPFQPGEEVKELLCHHKFHSECLEPWLR-ERQHCPLC 116 (195)
Q Consensus 76 C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~-~~~~CP~C 116 (195)
|+||++... .+..++|+|.||..|+..|+. ....||+|
T Consensus 1 C~iC~~~~~---~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELK---DPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCC---CcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 789999844 788899999999999999998 56679987
No 23
>KOG1734|consensus
Probab=98.67 E-value=6.4e-09 Score=84.64 Aligned_cols=58 Identities=26% Similarity=0.675 Sum_probs=46.1
Q ss_pred CCCCccccccccccCCC-------ceEEeCCCCccCccChhhhhc--cCccccccccccccCCCCCC
Q psy7279 71 APAAQCVICLAPFQPGE-------EVKELLCHHKFHSECLEPWLR--ERQHCPLCRNAVSVGSISSE 128 (195)
Q Consensus 71 ~~~~~C~IC~~~~~~~~-------~~~~l~C~H~Fh~~Ci~~wl~--~~~~CP~Cr~~~~~~~~~~~ 128 (195)
.++..|+||-..+.... +..+|.|+|+||..||+.|.- ++++||.|+..+..+..-.+
T Consensus 222 l~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl~rmfsn 288 (328)
T KOG1734|consen 222 LSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKRMFSN 288 (328)
T ss_pred CCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhHhhhccC
Confidence 34779999998775433 567889999999999999974 57799999999876655443
No 24
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=5.8e-09 Score=84.75 Aligned_cols=49 Identities=31% Similarity=0.677 Sum_probs=42.4
Q ss_pred CCccccccccccCCCceEEeCCCCccCccChhh-hhccCcc-ccccccccccCC
Q psy7279 73 AAQCVICLAPFQPGEEVKELLCHHKFHSECLEP-WLRERQH-CPLCRNAVSVGS 124 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~-wl~~~~~-CP~Cr~~~~~~~ 124 (195)
+..|+||++... .+..++|||+||..||.. |-..+.. ||+||+.+..+.
T Consensus 215 d~kC~lC~e~~~---~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~ 265 (271)
T COG5574 215 DYKCFLCLEEPE---VPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKK 265 (271)
T ss_pred ccceeeeecccC---CcccccccchhhHHHHHHHHHhhccccCchhhhhccchh
Confidence 778999999887 888999999999999999 8766554 999999876554
No 25
>KOG2164|consensus
Probab=98.60 E-value=1.3e-08 Score=89.45 Aligned_cols=50 Identities=28% Similarity=0.681 Sum_probs=41.1
Q ss_pred CCccccccccccCCCceEEeCCCCccCccChhhhhcc-----CccccccccccccCCC
Q psy7279 73 AAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRE-----RQHCPLCRNAVSVGSI 125 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~-----~~~CP~Cr~~~~~~~~ 125 (195)
+..|+||++... -+..+.|||+||..||.+++.. ...||+||..+..+++
T Consensus 186 ~~~CPICL~~~~---~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl 240 (513)
T KOG2164|consen 186 DMQCPICLEPPS---VPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDL 240 (513)
T ss_pred CCcCCcccCCCC---cccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccce
Confidence 678999999877 5666679999999999998754 3479999999887544
No 26
>KOG0287|consensus
Probab=98.58 E-value=8.2e-09 Score=86.47 Aligned_cols=50 Identities=28% Similarity=0.630 Sum_probs=45.0
Q ss_pred CCccccccccccCCCceEEeCCCCccCccChhhhhccCccccccccccccCCC
Q psy7279 73 AAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQHCPLCRNAVSVGSI 125 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~~~~ 125 (195)
-..|.||.+.|. -+.++||+|.||..||+.+|..+..||.|+.++....+
T Consensus 23 lLRC~IC~eyf~---ip~itpCsHtfCSlCIR~~L~~~p~CP~C~~~~~Es~L 72 (442)
T KOG0287|consen 23 LLRCGICFEYFN---IPMITPCSHTFCSLCIRKFLSYKPQCPTCCVTVTESDL 72 (442)
T ss_pred HHHHhHHHHHhc---CceeccccchHHHHHHHHHhccCCCCCceecccchhhh
Confidence 558999999998 88899999999999999999999999999998875443
No 27
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=98.54 E-value=3.9e-08 Score=65.76 Aligned_cols=31 Identities=35% Similarity=0.933 Sum_probs=28.1
Q ss_pred CCCCccCccChhhhhccCccccccccccccC
Q psy7279 93 LCHHKFHSECLEPWLRERQHCPLCRNAVSVG 123 (195)
Q Consensus 93 ~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 123 (195)
-|.|.||..||.+||..+..||++|+++...
T Consensus 53 ~CnHaFH~HCI~rWL~Tk~~CPld~q~w~~~ 83 (88)
T COG5194 53 VCNHAFHDHCIYRWLDTKGVCPLDRQTWVLA 83 (88)
T ss_pred ecchHHHHHHHHHHHhhCCCCCCCCceeEEe
Confidence 4999999999999999999999999987543
No 28
>KOG1493|consensus
Probab=98.53 E-value=7.7e-09 Score=68.53 Aligned_cols=51 Identities=37% Similarity=0.943 Sum_probs=38.0
Q ss_pred CCCcccccccccc--------CC-CceEEeC-CCCccCccChhhhhcc---Ccccccccccccc
Q psy7279 72 PAAQCVICLAPFQ--------PG-EEVKELL-CHHKFHSECLEPWLRE---RQHCPLCRNAVSV 122 (195)
Q Consensus 72 ~~~~C~IC~~~~~--------~~-~~~~~l~-C~H~Fh~~Ci~~wl~~---~~~CP~Cr~~~~~ 122 (195)
+++.|.||.-.|. .+ +-+.++. |.|.||..||.+|+.. +..||+||+.+..
T Consensus 19 ~~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~~ 82 (84)
T KOG1493|consen 19 PDETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQF 82 (84)
T ss_pred CCCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeEe
Confidence 3668999988875 12 2334443 9999999999999965 4579999998753
No 29
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.47 E-value=2.6e-08 Score=81.94 Aligned_cols=50 Identities=28% Similarity=0.604 Sum_probs=44.3
Q ss_pred CCccccccccccCCCceEEeCCCCccCccChhhhhccCccccccccccccCCC
Q psy7279 73 AAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQHCPLCRNAVSVGSI 125 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~~~~ 125 (195)
-..|.||-+.|. -+..++|||.||..||..+|..+..||+||.......+
T Consensus 25 ~lrC~IC~~~i~---ip~~TtCgHtFCslCIR~hL~~qp~CP~Cr~~~~esrl 74 (391)
T COG5432 25 MLRCRICDCRIS---IPCETTCGHTFCSLCIRRHLGTQPFCPVCREDPCESRL 74 (391)
T ss_pred HHHhhhhhheee---cceecccccchhHHHHHHHhcCCCCCccccccHHhhhc
Confidence 557999999998 77888999999999999999999999999998765443
No 30
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.47 E-value=3.8e-08 Score=59.15 Aligned_cols=33 Identities=30% Similarity=0.679 Sum_probs=21.7
Q ss_pred cccccccccC-CCceEEeCCCCccCccChhhhhcc
Q psy7279 76 CVICLAPFQP-GEEVKELLCHHKFHSECLEPWLRE 109 (195)
Q Consensus 76 C~IC~~~~~~-~~~~~~l~C~H~Fh~~Ci~~wl~~ 109 (195)
|+||.+ |.. ...++.|+|||.||..||.+++..
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~ 34 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKK 34 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhc
Confidence 899999 653 445888999999999999999874
No 31
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.43 E-value=5.8e-08 Score=65.12 Aligned_cols=50 Identities=20% Similarity=0.372 Sum_probs=40.2
Q ss_pred CCccccccccccCCCceEEeCCCCccCccChhhhhcc-CccccccccccccCCC
Q psy7279 73 AAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRE-RQHCPLCRNAVSVGSI 125 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~-~~~CP~Cr~~~~~~~~ 125 (195)
...|+|+.+.+. +++.+++||.|.+.||.+|+.. +.+||+|+..+...++
T Consensus 4 ~f~CpIt~~lM~---dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l 54 (73)
T PF04564_consen 4 EFLCPITGELMR---DPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSESDL 54 (73)
T ss_dssp GGB-TTTSSB-S---SEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGS
T ss_pred ccCCcCcCcHhh---CceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccc
Confidence 458999999999 8999999999999999999998 8899999988866544
No 32
>KOG0824|consensus
Probab=98.35 E-value=3.6e-07 Score=75.64 Aligned_cols=54 Identities=22% Similarity=0.519 Sum_probs=44.2
Q ss_pred CCccccccccccCCCceEEeCCCCccCccChhhhhcc-CccccccccccccCCCCCCC
Q psy7279 73 AAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRE-RQHCPLCRNAVSVGSISSEN 129 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~-~~~CP~Cr~~~~~~~~~~~~ 129 (195)
..+|+||+.... .++.++|+|.||..||+.-... ..+|++||.+++...+....
T Consensus 7 ~~eC~IC~nt~n---~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~i~~~ps 61 (324)
T KOG0824|consen 7 KKECLICYNTGN---CPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDSTIDFEPS 61 (324)
T ss_pred CCcceeeeccCC---cCccccccchhhhhhhcchhhcCCCCCceecCCCCcchhcchh
Confidence 568999999876 7789999999999999876655 55799999999876554443
No 33
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=98.31 E-value=3.5e-07 Score=59.04 Aligned_cols=51 Identities=25% Similarity=0.600 Sum_probs=25.3
Q ss_pred CCccccccccccCCCceEE-eCCCCccCccChhhhhccCccccccccccccCCCCCC
Q psy7279 73 AAQCVICLAPFQPGEEVKE-LLCHHKFHSECLEPWLRERQHCPLCRNAVSVGSISSE 128 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~-l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~~~~~~~ 128 (195)
-..|++|.+.+. .++. ..|.|.||..||..-+. ..||+|+.+....++..+
T Consensus 7 lLrCs~C~~~l~---~pv~l~~CeH~fCs~Ci~~~~~--~~CPvC~~Paw~qD~~~N 58 (65)
T PF14835_consen 7 LLRCSICFDILK---EPVCLGGCEHIFCSSCIRDCIG--SECPVCHTPAWIQDIQIN 58 (65)
T ss_dssp TTS-SSS-S--S---S-B---SSS--B-TTTGGGGTT--TB-SSS--B-S-SS----
T ss_pred hcCCcHHHHHhc---CCceeccCccHHHHHHhHHhcC--CCCCCcCChHHHHHHHhh
Confidence 347999999988 6655 46999999999988655 349999998876665443
No 34
>KOG0828|consensus
Probab=98.30 E-value=1.2e-07 Score=82.98 Aligned_cols=50 Identities=36% Similarity=0.939 Sum_probs=39.5
Q ss_pred CCccccccccccC---CC-----------ceEEeCCCCccCccChhhhhcc-Ccccccccccccc
Q psy7279 73 AAQCVICLAPFQP---GE-----------EVKELLCHHKFHSECLEPWLRE-RQHCPLCRNAVSV 122 (195)
Q Consensus 73 ~~~C~IC~~~~~~---~~-----------~~~~l~C~H~Fh~~Ci~~wl~~-~~~CP~Cr~~~~~ 122 (195)
...|+||+..+.. +. ....+||.|+||..|+.+|... +-.||+||.++++
T Consensus 571 t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 571 TNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred cccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence 5689999987641 11 2345699999999999999984 6699999998864
No 35
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=98.29 E-value=1.8e-07 Score=62.30 Aligned_cols=50 Identities=32% Similarity=0.704 Sum_probs=23.6
Q ss_pred CCcccccccccc-CCCceEEe----CCCCccCccChhhhhcc---C--------cccccccccccc
Q psy7279 73 AAQCVICLAPFQ-PGEEVKEL----LCHHKFHSECLEPWLRE---R--------QHCPLCRNAVSV 122 (195)
Q Consensus 73 ~~~C~IC~~~~~-~~~~~~~l----~C~H~Fh~~Ci~~wl~~---~--------~~CP~Cr~~~~~ 122 (195)
+..|.||+..+. .+..+... .|+..||..||.+|+.. . ..||.|+.++..
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~ 67 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISW 67 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEG
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeE
Confidence 457999999865 33333222 38999999999999963 1 149999998854
No 36
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=98.26 E-value=3.4e-07 Score=56.64 Aligned_cols=42 Identities=31% Similarity=0.756 Sum_probs=33.1
Q ss_pred ccccccccccCCCceEEeCCC-----CccCccChhhhhcc--Cccccccc
Q psy7279 75 QCVICLAPFQPGEEVKELLCH-----HKFHSECLEPWLRE--RQHCPLCR 117 (195)
Q Consensus 75 ~C~IC~~~~~~~~~~~~l~C~-----H~Fh~~Ci~~wl~~--~~~CP~Cr 117 (195)
.|.||++ ...++.+...||. |.+|..|+.+|+.. +.+||+|+
T Consensus 1 ~CrIC~~-~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHD-EGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCC-CCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 4899998 3344566778975 88999999999965 45899995
No 37
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=98.25 E-value=1.5e-07 Score=87.82 Aligned_cols=50 Identities=34% Similarity=0.900 Sum_probs=37.7
Q ss_pred CCCccccccccccC--CC-ceEEeC-CCCccCccChhhhhcc--Cccccccccccc
Q psy7279 72 PAAQCVICLAPFQP--GE-EVKELL-CHHKFHSECLEPWLRE--RQHCPLCRNAVS 121 (195)
Q Consensus 72 ~~~~C~IC~~~~~~--~~-~~~~l~-C~H~Fh~~Ci~~wl~~--~~~CP~Cr~~~~ 121 (195)
..++|+||+..+.. .. +-.+.+ |+|.||..|+.+|++. +.+||+||.+++
T Consensus 1468 G~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1468 GHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred CcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 36789999987651 11 222333 9999999999999986 568999998764
No 38
>KOG2177|consensus
Probab=98.19 E-value=3e-07 Score=75.59 Aligned_cols=42 Identities=38% Similarity=0.788 Sum_probs=37.7
Q ss_pred CCccccccccccCCCceEEeCCCCccCccChhhhhccCccccccc
Q psy7279 73 AAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQHCPLCR 117 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr 117 (195)
...|+||++.|. .+..++|+|.||..|+..++.....||.||
T Consensus 13 ~~~C~iC~~~~~---~p~~l~C~H~~c~~C~~~~~~~~~~Cp~cr 54 (386)
T KOG2177|consen 13 ELTCPICLEYFR---EPVLLPCGHNFCRACLTRSWEGPLSCPVCR 54 (386)
T ss_pred cccChhhHHHhh---cCccccccchHhHHHHHHhcCCCcCCcccC
Confidence 678999999999 558889999999999999888556899999
No 39
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.17 E-value=9.2e-07 Score=74.24 Aligned_cols=53 Identities=15% Similarity=0.424 Sum_probs=38.2
Q ss_pred CCccccccccccCCCce--EEeCCCCccCccChhhhhcc-CccccccccccccCCC
Q psy7279 73 AAQCVICLAPFQPGEEV--KELLCHHKFHSECLEPWLRE-RQHCPLCRNAVSVGSI 125 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~--~~l~C~H~Fh~~Ci~~wl~~-~~~CP~Cr~~~~~~~~ 125 (195)
+..|+||...-...... .+.+|||.||..|+...+.. ...||.|+..+....+
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~f 58 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKNNF 58 (309)
T ss_pred CCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchhhc
Confidence 46899999953322222 22279999999999996644 5689999998876554
No 40
>KOG0311|consensus
Probab=98.12 E-value=1.8e-07 Score=78.98 Aligned_cols=52 Identities=27% Similarity=0.607 Sum_probs=42.4
Q ss_pred CCccccccccccCCCceEEeC-CCCccCccChhhhhcc-CccccccccccccCCCCC
Q psy7279 73 AAQCVICLAPFQPGEEVKELL-CHHKFHSECLEPWLRE-RQHCPLCRNAVSVGSISS 127 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l~-C~H~Fh~~Ci~~wl~~-~~~CP~Cr~~~~~~~~~~ 127 (195)
+..|+|||+.+. ....++ |.|.||..||..-++. ++.||.||+.+..+....
T Consensus 43 ~v~c~icl~llk---~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~SkrsLr 96 (381)
T KOG0311|consen 43 QVICPICLSLLK---KTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKRSLR 96 (381)
T ss_pred hhccHHHHHHHH---hhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccccCC
Confidence 778999999988 555554 9999999999887765 789999999987665433
No 41
>KOG2930|consensus
Probab=98.05 E-value=1.2e-06 Score=61.47 Aligned_cols=50 Identities=30% Similarity=0.707 Sum_probs=36.9
Q ss_pred CCCCcccccccccc-------------CCCceEEe-CCCCccCccChhhhhccCcccccccccc
Q psy7279 71 APAAQCVICLAPFQ-------------PGEEVKEL-LCHHKFHSECLEPWLRERQHCPLCRNAV 120 (195)
Q Consensus 71 ~~~~~C~IC~~~~~-------------~~~~~~~l-~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~ 120 (195)
..-+.|+||..-+- .++-.+.. -|.|.||..||.+|++.+..||+|.++-
T Consensus 44 i~vDnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlktr~vCPLdn~eW 107 (114)
T KOG2930|consen 44 IVVDNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLKTRNVCPLDNKEW 107 (114)
T ss_pred eeechhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHhhcCcCCCcCcce
Confidence 33567999876442 12223333 4999999999999999999999997653
No 42
>KOG4265|consensus
Probab=98.05 E-value=1.9e-06 Score=72.96 Aligned_cols=46 Identities=30% Similarity=0.778 Sum_probs=40.3
Q ss_pred CCccccccccccCCCceEEeCCCCc-cCccChhhhhccCccccccccccc
Q psy7279 73 AAQCVICLAPFQPGEEVKELLCHHK-FHSECLEPWLRERQHCPLCRNAVS 121 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l~C~H~-Fh~~Ci~~wl~~~~~CP~Cr~~~~ 121 (195)
..+|.||+.+.+ ++.+|||.|. .|..|.+...-+++.||+||+++.
T Consensus 290 gkeCVIClse~r---dt~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~ 336 (349)
T KOG4265|consen 290 GKECVICLSESR---DTVVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIE 336 (349)
T ss_pred CCeeEEEecCCc---ceEEecchhhehhHhHHHHHHHhhcCCCccccchH
Confidence 678999999988 8999999997 899998876666788999999884
No 43
>KOG1039|consensus
Probab=97.90 E-value=3.7e-06 Score=71.89 Aligned_cols=49 Identities=29% Similarity=0.794 Sum_probs=37.5
Q ss_pred CCccccccccccCCC----ceEEeC-CCCccCccChhhhhc--c-----Cccccccccccc
Q psy7279 73 AAQCVICLAPFQPGE----EVKELL-CHHKFHSECLEPWLR--E-----RQHCPLCRNAVS 121 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~----~~~~l~-C~H~Fh~~Ci~~wl~--~-----~~~CP~Cr~~~~ 121 (195)
+..|.||++...... .-.++| |.|.||..||..|-. + .+.||.||....
T Consensus 161 ~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~ 221 (344)
T KOG1039|consen 161 EKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSS 221 (344)
T ss_pred cccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccc
Confidence 779999999876332 123445 999999999999983 3 467999998653
No 44
>KOG0804|consensus
Probab=97.86 E-value=4.4e-06 Score=72.58 Aligned_cols=47 Identities=34% Similarity=0.933 Sum_probs=36.3
Q ss_pred CCccccccccccCCC-ceEEeCCCCccCccChhhhhccCccccccccccc
Q psy7279 73 AAQCVICLAPFQPGE-EVKELLCHHKFHSECLEPWLRERQHCPLCRNAVS 121 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~-~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 121 (195)
--+|+||||.+...- -.....|.|.||-.|+..|.. .+||+||.-..
T Consensus 175 LPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~--~scpvcR~~q~ 222 (493)
T KOG0804|consen 175 LPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWD--SSCPVCRYCQS 222 (493)
T ss_pred CCCcchhHhhcCccccceeeeecccccchHHHhhccc--CcChhhhhhcC
Confidence 347999999887432 234556999999999999965 57999998654
No 45
>KOG0827|consensus
Probab=97.86 E-value=3.6e-06 Score=71.97 Aligned_cols=49 Identities=31% Similarity=0.824 Sum_probs=36.5
Q ss_pred CCccccccccccCCCceEEeC-CCCccCccChhhhhcc---Cccccccccccc
Q psy7279 73 AAQCVICLAPFQPGEEVKELL-CHHKFHSECLEPWLRE---RQHCPLCRNAVS 121 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l~-C~H~Fh~~Ci~~wl~~---~~~CP~Cr~~~~ 121 (195)
...|.||-+.+....+...+. |||+||..|+.+|+.. +..||+|+-.++
T Consensus 4 ~A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~~ 56 (465)
T KOG0827|consen 4 MAECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKLQ 56 (465)
T ss_pred cceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeeccc
Confidence 357999955554444455555 9999999999999986 357999994443
No 46
>KOG4172|consensus
Probab=97.77 E-value=2.3e-06 Score=53.20 Aligned_cols=46 Identities=22% Similarity=0.524 Sum_probs=35.9
Q ss_pred CCccccccccccCCCceEEeCCCCc-cCccChhhhhc-cCccccccccccc
Q psy7279 73 AAQCVICLAPFQPGEEVKELLCHHK-FHSECLEPWLR-ERQHCPLCRNAVS 121 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l~C~H~-Fh~~Ci~~wl~-~~~~CP~Cr~~~~ 121 (195)
+++|.||+|.-. +.+...|||. .|..|..+.++ .+..||+||+++.
T Consensus 7 ~dECTICye~pv---dsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~ 54 (62)
T KOG4172|consen 7 SDECTICYEHPV---DSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIK 54 (62)
T ss_pred ccceeeeccCcc---hHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence 468999999755 4455569997 78889766555 6889999999875
No 47
>KOG4445|consensus
Probab=97.72 E-value=6.8e-06 Score=68.17 Aligned_cols=58 Identities=33% Similarity=0.756 Sum_probs=45.8
Q ss_pred CCCCCCCccccccccccCCCceEEeCCCCccCccChhhhhcc-----------------------CccccccccccccCC
Q psy7279 68 ADEAPAAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRE-----------------------RQHCPLCRNAVSVGS 124 (195)
Q Consensus 68 ~~~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~-----------------------~~~CP~Cr~~~~~~~ 124 (195)
.+......|.|||--|..+....+++|-|.||..|+.++|.. ...||+||..+..+.
T Consensus 110 ~nn~p~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~e~ 189 (368)
T KOG4445|consen 110 ENNHPNGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKIEE 189 (368)
T ss_pred cCCCCCCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhccccc
Confidence 334447799999999998888889999999999999776630 225999999987654
Q ss_pred C
Q psy7279 125 I 125 (195)
Q Consensus 125 ~ 125 (195)
.
T Consensus 190 ~ 190 (368)
T KOG4445|consen 190 N 190 (368)
T ss_pred c
Confidence 3
No 48
>KOG0978|consensus
Probab=97.72 E-value=4.7e-06 Score=76.60 Aligned_cols=50 Identities=22% Similarity=0.652 Sum_probs=41.8
Q ss_pred CCccccccccccCCCceEEeCCCCccCccChhhhhcc-CccccccccccccCCC
Q psy7279 73 AAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRE-RQHCPLCRNAVSVGSI 125 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~-~~~CP~Cr~~~~~~~~ 125 (195)
-..|++|-..+. +.++..|+|.||..|+..-+.. ...||.|...|..-++
T Consensus 643 ~LkCs~Cn~R~K---d~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganDv 693 (698)
T KOG0978|consen 643 LLKCSVCNTRWK---DAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGANDV 693 (698)
T ss_pred ceeCCCccCchh---hHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCcccc
Confidence 458999998777 7777789999999999998864 7789999998876544
No 49
>KOG0825|consensus
Probab=97.71 E-value=4e-06 Score=77.11 Aligned_cols=53 Identities=30% Similarity=0.526 Sum_probs=43.0
Q ss_pred CCccccccccccCCCceEEeCCCCccCccChhhhhccCccccccccccccCCC
Q psy7279 73 AAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQHCPLCRNAVSVGSI 125 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~~~~ 125 (195)
...|++|+..+.++......+|+|.||..||..|-+.-.+||+||..|.....
T Consensus 123 ~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aqTCPiDR~EF~~v~V 175 (1134)
T KOG0825|consen 123 ENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQTCPVDRGEFGEVKV 175 (1134)
T ss_pred hhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhcccCchhhhhhheeee
Confidence 45788888887755455555799999999999999999999999999865433
No 50
>KOG4159|consensus
Probab=97.56 E-value=2.1e-05 Score=68.64 Aligned_cols=48 Identities=29% Similarity=0.683 Sum_probs=43.0
Q ss_pred CCCccccccccccCCCceEEeCCCCccCccChhhhhccCcccccccccccc
Q psy7279 72 PAAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQHCPLCRNAVSV 122 (195)
Q Consensus 72 ~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 122 (195)
.+..|.||...+. +++.+||||.||..||.+-+.....||.||..+..
T Consensus 83 sef~c~vc~~~l~---~pv~tpcghs~c~~Cl~r~ld~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 83 SEFECCVCSRALY---PPVVTPCGHSFCLECLDRSLDQETECPLCRDELVE 130 (398)
T ss_pred chhhhhhhHhhcC---CCccccccccccHHHHHHHhccCCCCccccccccc
Confidence 3789999999988 88888999999999999988888889999998863
No 51
>KOG2660|consensus
Probab=97.49 E-value=2.1e-05 Score=66.07 Aligned_cols=50 Identities=22% Similarity=0.549 Sum_probs=41.6
Q ss_pred CCccccccccccCCCceEEeCCCCccCccChhhhhccCccccccccccccCC
Q psy7279 73 AAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQHCPLCRNAVSVGS 124 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~~~ 124 (195)
...|.+|...|. +...+..|-|.||+.||...+....+||.|...+....
T Consensus 15 ~itC~LC~GYli--DATTI~eCLHTFCkSCivk~l~~~~~CP~C~i~ih~t~ 64 (331)
T KOG2660|consen 15 HITCRLCGGYLI--DATTITECLHTFCKSCIVKYLEESKYCPTCDIVIHKTH 64 (331)
T ss_pred ceehhhccceee--cchhHHHHHHHHHHHHHHHHHHHhccCCccceeccCcc
Confidence 668999999988 33444459999999999999999999999988775543
No 52
>KOG1785|consensus
Probab=97.48 E-value=2.8e-05 Score=66.88 Aligned_cols=47 Identities=32% Similarity=0.713 Sum_probs=39.3
Q ss_pred CccccccccccCCCceEEeCCCCccCccChhhhhcc--CccccccccccccC
Q psy7279 74 AQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRE--RQHCPLCRNAVSVG 123 (195)
Q Consensus 74 ~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~--~~~CP~Cr~~~~~~ 123 (195)
..|.||-|.-+ ++.+-||||..|..|+..|-.. ..+||.||.++...
T Consensus 370 eLCKICaendK---dvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGt 418 (563)
T KOG1785|consen 370 ELCKICAENDK---DVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGT 418 (563)
T ss_pred HHHHHhhccCC---CcccccccchHHHHHHHhhcccCCCCCCCceeeEeccc
Confidence 36999998644 7777799999999999999854 67899999998643
No 53
>KOG1645|consensus
Probab=97.45 E-value=5.5e-05 Score=65.22 Aligned_cols=51 Identities=33% Similarity=0.882 Sum_probs=39.0
Q ss_pred CCccccccccccCCC--ceEEeCCCCccCccChhhhhcc--CccccccccccccC
Q psy7279 73 AAQCVICLAPFQPGE--EVKELLCHHKFHSECLEPWLRE--RQHCPLCRNAVSVG 123 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~--~~~~l~C~H~Fh~~Ci~~wl~~--~~~CP~Cr~~~~~~ 123 (195)
...|+||++.+.... ..+.+.|+|.|-..||++|+.+ ...||.|..+....
T Consensus 4 g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~katkr 58 (463)
T KOG1645|consen 4 GTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKATKR 58 (463)
T ss_pred cccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChhHHH
Confidence 568999999887533 3444569999999999999953 34699998765443
No 54
>KOG0297|consensus
Probab=97.34 E-value=9.5e-05 Score=64.74 Aligned_cols=49 Identities=29% Similarity=0.739 Sum_probs=42.0
Q ss_pred CCccccccccccCCCceEE-eCCCCccCccChhhhhccCccccccccccccCC
Q psy7279 73 AAQCVICLAPFQPGEEVKE-LLCHHKFHSECLEPWLRERQHCPLCRNAVSVGS 124 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~-l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~~~ 124 (195)
+..|+||...+. .+.. +.|+|.||..|+..|+..+..||.|+..+....
T Consensus 21 ~l~C~~C~~vl~---~p~~~~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~~ 70 (391)
T KOG0297|consen 21 NLLCPICMSVLR---DPVQTTTCGHRFCAGCLLESLSNHQKCPVCRQELTQAE 70 (391)
T ss_pred cccCcccccccc---CCCCCCCCCCcccccccchhhccCcCCcccccccchhh
Confidence 678999999998 4444 589999999999999999999999988775443
No 55
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=97.24 E-value=8e-05 Score=58.52 Aligned_cols=45 Identities=24% Similarity=0.499 Sum_probs=39.5
Q ss_pred CCccccccccccCCCceEEeCCCCccCccChhhhhccCcccccccccc
Q psy7279 73 AAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQHCPLCRNAV 120 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~ 120 (195)
...|.||.++|. .++++.|||.||..|...-.+....|-+|.+..
T Consensus 196 PF~C~iCKkdy~---spvvt~CGH~FC~~Cai~~y~kg~~C~~Cgk~t 240 (259)
T COG5152 196 PFLCGICKKDYE---SPVVTECGHSFCSLCAIRKYQKGDECGVCGKAT 240 (259)
T ss_pred ceeehhchhhcc---chhhhhcchhHHHHHHHHHhccCCcceecchhh
Confidence 458999999999 888889999999999988888888999996643
No 56
>KOG1941|consensus
Probab=97.16 E-value=0.00012 Score=63.01 Aligned_cols=49 Identities=33% Similarity=0.688 Sum_probs=39.8
Q ss_pred CCccccccccccCC-CceEEeCCCCccCccChhhhhcc--Cccccccccccc
Q psy7279 73 AAQCVICLAPFQPG-EEVKELLCHHKFHSECLEPWLRE--RQHCPLCRNAVS 121 (195)
Q Consensus 73 ~~~C~IC~~~~~~~-~~~~~l~C~H~Fh~~Ci~~wl~~--~~~CP~Cr~~~~ 121 (195)
+..|..|-+.+..+ +....|||.|+||..|+...+.+ ..+||.||+...
T Consensus 365 ~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~CrklrS 416 (518)
T KOG1941|consen 365 ELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRKLRS 416 (518)
T ss_pred hhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHHHHh
Confidence 66899999987654 45678899999999999999865 468999995543
No 57
>KOG1002|consensus
Probab=97.14 E-value=0.00011 Score=65.46 Aligned_cols=50 Identities=28% Similarity=0.755 Sum_probs=40.9
Q ss_pred CCCCccccccccccCCCceEEeCCCCccCccChhhhhcc-----CccccccccccccC
Q psy7279 71 APAAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRE-----RQHCPLCRNAVSVG 123 (195)
Q Consensus 71 ~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~-----~~~CP~Cr~~~~~~ 123 (195)
.....|.+|-+.-+ +.+...|.|.||+.||..++.. +.+||.|...+..+
T Consensus 534 k~~~~C~lc~d~ae---d~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiD 588 (791)
T KOG1002|consen 534 KGEVECGLCHDPAE---DYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSID 588 (791)
T ss_pred cCceeecccCChhh---hhHhhhhhHHHHHHHHHHHHHhhhcccCCCCcccccccccc
Confidence 34678999999876 7778889999999999887743 56899998877654
No 58
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=97.12 E-value=0.00014 Score=46.30 Aligned_cols=41 Identities=32% Similarity=0.802 Sum_probs=27.5
Q ss_pred CCccccccccccCCCceEEeCCCCccCccChhhhhcc--Cccccc
Q psy7279 73 AAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRE--RQHCPL 115 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~--~~~CP~ 115 (195)
...|+|.+..|. +.++...|+|.|-+..|.+|++. ...||+
T Consensus 11 ~~~CPiT~~~~~--~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 11 SLKCPITLQPFE--DPVKSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp -SB-TTTSSB-S--SEEEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred ccCCCCcCChhh--CCcCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 678999999998 34444579999999999999943 457998
No 59
>KOG4692|consensus
Probab=97.10 E-value=0.00023 Score=60.56 Aligned_cols=51 Identities=22% Similarity=0.396 Sum_probs=43.1
Q ss_pred CCCccccccccccCCCceEEeCCCCccCccChhhhhccCccccccccccccCCC
Q psy7279 72 PAAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQHCPLCRNAVSVGSI 125 (195)
Q Consensus 72 ~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~~~~ 125 (195)
++..|+||...-. ..+..||+|.-|+.||.+++...+.|=.|++.+.....
T Consensus 421 Ed~lCpICyA~pi---~Avf~PC~H~SC~~CI~qHlmN~k~CFfCktTv~~~~l 471 (489)
T KOG4692|consen 421 EDNLCPICYAGPI---NAVFAPCSHRSCYGCITQHLMNCKRCFFCKTTVIDVIL 471 (489)
T ss_pred ccccCcceecccc---hhhccCCCCchHHHHHHHHHhcCCeeeEecceeeehhc
Confidence 3778999998644 56677999999999999999999999999998875444
No 60
>KOG1813|consensus
Probab=97.07 E-value=0.00017 Score=59.81 Aligned_cols=45 Identities=22% Similarity=0.473 Sum_probs=40.2
Q ss_pred CCccccccccccCCCceEEeCCCCccCccChhhhhccCcccccccccc
Q psy7279 73 AAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQHCPLCRNAV 120 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~ 120 (195)
...|-||...|. .+++..|+|.||..|...-++....|.+|.+..
T Consensus 241 Pf~c~icr~~f~---~pVvt~c~h~fc~~ca~~~~qk~~~c~vC~~~t 285 (313)
T KOG1813|consen 241 PFKCFICRKYFY---RPVVTKCGHYFCEVCALKPYQKGEKCYVCSQQT 285 (313)
T ss_pred Cccccccccccc---cchhhcCCceeehhhhccccccCCcceeccccc
Confidence 446999999999 888899999999999999999889999997654
No 61
>KOG2879|consensus
Probab=96.97 E-value=0.00058 Score=56.22 Aligned_cols=47 Identities=23% Similarity=0.426 Sum_probs=36.7
Q ss_pred CCccccccccccCCCceEEeCCCCccCccChhhhhcc--Cccccccccccc
Q psy7279 73 AAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRE--RQHCPLCRNAVS 121 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~--~~~CP~Cr~~~~ 121 (195)
+.+|++|-+.-. .+....+|+|+||..||..-... ..+||.|-..+.
T Consensus 239 ~~~C~~Cg~~Pt--iP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 239 DTECPVCGEPPT--IPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred CceeeccCCCCC--CCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 779999999755 24455569999999999876543 468999987764
No 62
>KOG1428|consensus
Probab=96.82 E-value=0.0005 Score=67.43 Aligned_cols=52 Identities=29% Similarity=0.701 Sum_probs=40.6
Q ss_pred CCCCccccccccccCCCceEEeCCCCccCccChhhhhccC----------cccccccccccc
Q psy7279 71 APAAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRER----------QHCPLCRNAVSV 122 (195)
Q Consensus 71 ~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~----------~~CP~Cr~~~~~ 122 (195)
+.++.|.||..+--.....+.|.|+|+||..|.+.-|... -+||+|+.++..
T Consensus 3484 D~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH 3545 (3738)
T KOG1428|consen 3484 DADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINH 3545 (3738)
T ss_pred ccCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhh
Confidence 3488999999876655678889999999999987655431 269999998753
No 63
>KOG0826|consensus
Probab=96.71 E-value=0.00072 Score=56.95 Aligned_cols=45 Identities=22% Similarity=0.434 Sum_probs=36.6
Q ss_pred CCccccccccccCCCceEEeC-CCCccCccChhhhhccCcccccccccc
Q psy7279 73 AAQCVICLAPFQPGEEVKELL-CHHKFHSECLEPWLRERQHCPLCRNAV 120 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l~-C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~ 120 (195)
...|+||+.... .+..+. -|-+||..|+.+.+..+..||+=..+.
T Consensus 300 ~~~CpvClk~r~---Nptvl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p~ 345 (357)
T KOG0826|consen 300 REVCPVCLKKRQ---NPTVLEVSGYVFCYPCIFSYVVNYGHCPVTGYPA 345 (357)
T ss_pred cccChhHHhccC---CCceEEecceEEeHHHHHHHHHhcCCCCccCCcc
Confidence 678999999876 444444 699999999999999999999865544
No 64
>KOG4275|consensus
Probab=96.64 E-value=0.00047 Score=57.24 Aligned_cols=42 Identities=26% Similarity=0.661 Sum_probs=34.0
Q ss_pred CCccccccccccCCCceEEeCCCCc-cCccChhhhhccCccccccccccc
Q psy7279 73 AAQCVICLAPFQPGEEVKELLCHHK-FHSECLEPWLRERQHCPLCRNAVS 121 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l~C~H~-Fh~~Ci~~wl~~~~~CP~Cr~~~~ 121 (195)
+..|+||++.-. +.+-|+|||. -|..|.... ..||+||+.+.
T Consensus 300 ~~LC~ICmDaP~---DCvfLeCGHmVtCt~CGkrm----~eCPICRqyi~ 342 (350)
T KOG4275|consen 300 RRLCAICMDAPR---DCVFLECGHMVTCTKCGKRM----NECPICRQYIV 342 (350)
T ss_pred HHHHHHHhcCCc---ceEEeecCcEEeehhhcccc----ccCchHHHHHH
Confidence 557999999877 8899999995 677787654 38999998763
No 65
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=96.51 E-value=0.0011 Score=40.40 Aligned_cols=40 Identities=38% Similarity=0.860 Sum_probs=26.8
Q ss_pred cccccccccCCCceEEeCCC--C---ccCccChhhhhcc--Ccccccc
Q psy7279 76 CVICLAPFQPGEEVKELLCH--H---KFHSECLEPWLRE--RQHCPLC 116 (195)
Q Consensus 76 C~IC~~~~~~~~~~~~l~C~--H---~Fh~~Ci~~wl~~--~~~CP~C 116 (195)
|-||++.-.... +...||. - ..|..|+.+|+.. ..+|++|
T Consensus 1 CrIC~~~~~~~~-~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDE-PLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS--EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCC-ceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 779999866443 5566754 3 7899999999974 5679887
No 66
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=96.51 E-value=0.0017 Score=45.98 Aligned_cols=31 Identities=23% Similarity=0.645 Sum_probs=26.6
Q ss_pred CCccccccccccCCCceEEeCCCCccCccChh
Q psy7279 73 AAQCVICLAPFQPGEEVKELLCHHKFHSECLE 104 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~ 104 (195)
+..|++|-..+.. ......||+|.||..|+.
T Consensus 78 ~~~C~vC~k~l~~-~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 78 STKCSVCGKPLGN-SVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred CCCccCcCCcCCC-ceEEEeCCCeEEeccccc
Confidence 6689999999876 467778999999999985
No 67
>KOG3970|consensus
Probab=96.43 E-value=0.0013 Score=52.75 Aligned_cols=49 Identities=29% Similarity=0.759 Sum_probs=39.4
Q ss_pred CCccccccccccCCCceEEeCCCCccCccChhhhhcc--------Ccccccccccccc
Q psy7279 73 AAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRE--------RQHCPLCRNAVSV 122 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~--------~~~CP~Cr~~~~~ 122 (195)
...|..|-..+..+ +.+.|-|-|.||+.|+..|... ...||.|..++-+
T Consensus 50 ~pNC~LC~t~La~g-dt~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFP 106 (299)
T KOG3970|consen 50 NPNCRLCNTPLASG-DTTRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFP 106 (299)
T ss_pred CCCCceeCCccccC-cceeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCC
Confidence 45799999998877 4556789999999999999753 2369999887743
No 68
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=96.39 E-value=0.0013 Score=40.18 Aligned_cols=45 Identities=22% Similarity=0.534 Sum_probs=21.3
Q ss_pred cccccccccCC-CceEEeCCCCccCccChhhhhc-cCcccccccccc
Q psy7279 76 CVICLAPFQPG-EEVKELLCHHKFHSECLEPWLR-ERQHCPLCRNAV 120 (195)
Q Consensus 76 C~IC~~~~~~~-~~~~~l~C~H~Fh~~Ci~~wl~-~~~~CP~Cr~~~ 120 (195)
|++|.+++... ....--+|++..|..|...-+. ....||-||.++
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 78999988422 2233334889999999777775 477899999875
No 69
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=96.39 E-value=0.0007 Score=50.22 Aligned_cols=36 Identities=22% Similarity=0.557 Sum_probs=29.9
Q ss_pred CCccccccccccCCCceEEeCCC------CccCccChhhhhc
Q psy7279 73 AAQCVICLAPFQPGEEVKELLCH------HKFHSECLEPWLR 108 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l~C~------H~Fh~~Ci~~wl~ 108 (195)
..+|.||++.+...+.++.++|+ |.||..|+.+|-+
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~ 67 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRR 67 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHh
Confidence 45899999999875567777877 8999999999943
No 70
>KOG4739|consensus
Probab=96.36 E-value=0.0017 Score=52.64 Aligned_cols=51 Identities=22% Similarity=0.540 Sum_probs=36.4
Q ss_pred ccccccccccCCCceEEeCCCCccCccChhhhhccCccccccccccccCCCCCC
Q psy7279 75 QCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQHCPLCRNAVSVGSISSE 128 (195)
Q Consensus 75 ~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~~~~~~~ 128 (195)
.|..|...-. ++....+.|.|+||..|...-. ...||+|+..+....+..+
T Consensus 5 hCn~C~~~~~-~~~f~LTaC~HvfC~~C~k~~~--~~~C~lCkk~ir~i~l~~s 55 (233)
T KOG4739|consen 5 HCNKCFRFPS-QDPFFLTACRHVFCEPCLKASS--PDVCPLCKKSIRIIQLNRS 55 (233)
T ss_pred EeccccccCC-CCceeeeechhhhhhhhcccCC--ccccccccceeeeeecccc
Confidence 4776766433 5677777899999999986432 2389999999766555443
No 71
>PHA02862 5L protein; Provisional
Probab=96.28 E-value=0.0014 Score=49.08 Aligned_cols=47 Identities=23% Similarity=0.711 Sum_probs=35.3
Q ss_pred CCccccccccccCCCceEEeCCC-----CccCccChhhhhcc--CccccccccccccC
Q psy7279 73 AAQCVICLAPFQPGEEVKELLCH-----HKFHSECLEPWLRE--RQHCPLCRNAVSVG 123 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l~C~-----H~Fh~~Ci~~wl~~--~~~CP~Cr~~~~~~ 123 (195)
+..|-||.+.-. +. .-||. ...|..|+.+|++. +..|++|+.++..+
T Consensus 2 ~diCWIC~~~~~--e~--~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~Ik 55 (156)
T PHA02862 2 SDICWICNDVCD--ER--NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNIK 55 (156)
T ss_pred CCEEEEecCcCC--CC--cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEEE
Confidence 357999999744 22 24654 57899999999965 56899999998643
No 72
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=96.23 E-value=0.0026 Score=54.19 Aligned_cols=47 Identities=26% Similarity=0.586 Sum_probs=38.6
Q ss_pred CCccccccccccCCCceEEeCCCCccCccChhhh--hccCcccccccccccc
Q psy7279 73 AAQCVICLAPFQPGEEVKELLCHHKFHSECLEPW--LRERQHCPLCRNAVSV 122 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~w--l~~~~~CP~Cr~~~~~ 122 (195)
...|.||.+.+. -...+||+|..|-.|..+. |-..+.||+||.+-..
T Consensus 61 n~~C~ICA~~~T---Ys~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~e~ 109 (493)
T COG5236 61 NMNCQICAGSTT---YSARYPCGHQICHACAVRLRALYMQKGCPLCRTETEA 109 (493)
T ss_pred cceeEEecCCce---EEEeccCCchHHHHHHHHHHHHHhccCCCccccccce
Confidence 668999999887 7788899999999997653 4457889999997643
No 73
>KOG0801|consensus
Probab=96.21 E-value=0.0017 Score=49.64 Aligned_cols=28 Identities=32% Similarity=0.844 Sum_probs=26.0
Q ss_pred CCccccccccccCCCceEEeCCCCccCc
Q psy7279 73 AAQCVICLAPFQPGEEVKELLCHHKFHS 100 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l~C~H~Fh~ 100 (195)
..+|.||||++..++.+..|||-.+||+
T Consensus 177 kGECvICLEdL~~GdtIARLPCLCIYHK 204 (205)
T KOG0801|consen 177 KGECVICLEDLEAGDTIARLPCLCIYHK 204 (205)
T ss_pred CCcEEEEhhhccCCCceeccceEEEeec
Confidence 5689999999999999999999999986
No 74
>KOG1571|consensus
Probab=96.17 E-value=0.0033 Score=53.71 Aligned_cols=43 Identities=26% Similarity=0.617 Sum_probs=32.5
Q ss_pred CCccccccccccCCCceEEeCCCCccCccChhhhhccCccccccccccc
Q psy7279 73 AAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQHCPLCRNAVS 121 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 121 (195)
...|.||++... ...-+||||.-| |..- .+...+||+||..+.
T Consensus 305 p~lcVVcl~e~~---~~~fvpcGh~cc--ct~c-s~~l~~CPvCR~rI~ 347 (355)
T KOG1571|consen 305 PDLCVVCLDEPK---SAVFVPCGHVCC--CTLC-SKHLPQCPVCRQRIR 347 (355)
T ss_pred CCceEEecCCcc---ceeeecCCcEEE--chHH-HhhCCCCchhHHHHH
Confidence 668999999987 688889999866 5432 223345999998764
No 75
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=96.16 E-value=0.0025 Score=53.27 Aligned_cols=50 Identities=24% Similarity=0.613 Sum_probs=37.5
Q ss_pred CCccccccccccCCCceEEeC-CCCccCccChhhhh-ccCcccccccc-ccccCCC
Q psy7279 73 AAQCVICLAPFQPGEEVKELL-CHHKFHSECLEPWL-RERQHCPLCRN-AVSVGSI 125 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l~-C~H~Fh~~Ci~~wl-~~~~~CP~Cr~-~~~~~~~ 125 (195)
...|+.|-..+. .+..++ |+|.||..||..-| .....||.|.. .+..+.+
T Consensus 274 ~LkCplc~~Llr---np~kT~cC~~~fc~eci~~al~dsDf~CpnC~rkdvlld~l 326 (427)
T COG5222 274 SLKCPLCHCLLR---NPMKTPCCGHTFCDECIGTALLDSDFKCPNCSRKDVLLDGL 326 (427)
T ss_pred cccCcchhhhhh---CcccCccccchHHHHHHhhhhhhccccCCCcccccchhhcc
Confidence 478999999887 555556 99999999998765 55789999954 4433333
No 76
>PHA03096 p28-like protein; Provisional
Probab=95.89 E-value=0.0021 Score=53.88 Aligned_cols=45 Identities=27% Similarity=0.544 Sum_probs=31.5
Q ss_pred CccccccccccCC----CceEEeC-CCCccCccChhhhhcc---Ccccccccc
Q psy7279 74 AQCVICLAPFQPG----EEVKELL-CHHKFHSECLEPWLRE---RQHCPLCRN 118 (195)
Q Consensus 74 ~~C~IC~~~~~~~----~~~~~l~-C~H~Fh~~Ci~~wl~~---~~~CP~Cr~ 118 (195)
..|.||++..... ..-..|+ |.|.||..|+..|... ..+||.||.
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~ 231 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRR 231 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccc
Confidence 5799999976532 2345565 9999999999999854 234444443
No 77
>KOG3268|consensus
Probab=95.82 E-value=0.0024 Score=49.55 Aligned_cols=50 Identities=32% Similarity=0.768 Sum_probs=33.6
Q ss_pred CccccccccccCCCce----EEeCCCCccCccChhhhhccC-----------ccccccccccccC
Q psy7279 74 AQCVICLAPFQPGEEV----KELLCHHKFHSECLEPWLRER-----------QHCPLCRNAVSVG 123 (195)
Q Consensus 74 ~~C~IC~~~~~~~~~~----~~l~C~H~Fh~~Ci~~wl~~~-----------~~CP~Cr~~~~~~ 123 (195)
..|.||+..--.|..+ --..|+..||.-|+..||+.- ..||.|..++..+
T Consensus 166 ~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~PialK 230 (234)
T KOG3268|consen 166 GACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIALK 230 (234)
T ss_pred hcccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcceee
Confidence 3577776643333222 223599999999999999641 1499998887654
No 78
>KOG3039|consensus
Probab=95.74 E-value=0.0056 Score=49.82 Aligned_cols=54 Identities=17% Similarity=0.241 Sum_probs=45.9
Q ss_pred CCccccccccccCCCceEEe-CCCCccCccChhhhhccCccccccccccccCCCC
Q psy7279 73 AAQCVICLAPFQPGEEVKEL-LCHHKFHSECLEPWLRERQHCPLCRNAVSVGSIS 126 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l-~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~~~~~ 126 (195)
...|+||.+.+...-....| ||||+|+..|..+.+.....||+|-.++...++.
T Consensus 221 ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkdrdiI 275 (303)
T KOG3039|consen 221 RYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKDRDII 275 (303)
T ss_pred ceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCcccceE
Confidence 45899999999866566666 6999999999999999999999999888776653
No 79
>KOG2114|consensus
Probab=95.73 E-value=0.0028 Score=59.43 Aligned_cols=42 Identities=29% Similarity=0.804 Sum_probs=34.5
Q ss_pred CCccccccccccCCCceEEeCCCCccCccChhhhhccCccccccccc
Q psy7279 73 AAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQHCPLCRNA 119 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~ 119 (195)
...|..|--.+. -+.+..-|+|.||.+|+. .....||.|+.+
T Consensus 840 ~skCs~C~~~Ld--lP~VhF~CgHsyHqhC~e---~~~~~CP~C~~e 881 (933)
T KOG2114|consen 840 VSKCSACEGTLD--LPFVHFLCGHSYHQHCLE---DKEDKCPKCLPE 881 (933)
T ss_pred eeeecccCCccc--cceeeeecccHHHHHhhc---cCcccCCccchh
Confidence 568999998877 366777899999999998 455689999873
No 80
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=95.67 E-value=0.0059 Score=46.56 Aligned_cols=48 Identities=25% Similarity=0.726 Sum_probs=35.7
Q ss_pred CCccccccccccCCCceEEeCCC--C---ccCccChhhhhcc--CccccccccccccCC
Q psy7279 73 AAQCVICLAPFQPGEEVKELLCH--H---KFHSECLEPWLRE--RQHCPLCRNAVSVGS 124 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l~C~--H---~Fh~~Ci~~wl~~--~~~CP~Cr~~~~~~~ 124 (195)
+..|-||.+.-. .. .-||. . ..|..|+..|+.. ...|++|+.++....
T Consensus 8 ~~~CRIC~~~~~--~~--~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i~~ 62 (162)
T PHA02825 8 DKCCWICKDEYD--VV--TNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNIKK 62 (162)
T ss_pred CCeeEecCCCCC--Cc--cCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEEEE
Confidence 668999998743 22 24654 4 5599999999965 557999999987553
No 81
>KOG1814|consensus
Probab=95.67 E-value=0.0031 Score=54.76 Aligned_cols=36 Identities=28% Similarity=0.572 Sum_probs=30.8
Q ss_pred CCccccccccccCCCceEEeCCCCccCccChhhhhc
Q psy7279 73 AAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLR 108 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~ 108 (195)
-..|.||++...-......+||+|+||+.|+..+..
T Consensus 184 lf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~ 219 (445)
T KOG1814|consen 184 LFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFT 219 (445)
T ss_pred cccceeeehhhcCcceeeecccchHHHHHHHHHHHH
Confidence 458999999876556788899999999999998874
No 82
>KOG4185|consensus
Probab=95.50 E-value=0.0066 Score=50.99 Aligned_cols=47 Identities=28% Similarity=0.702 Sum_probs=38.6
Q ss_pred CccccccccccCCC---ceEEeCCCCccCccChhhhhcc-Ccccccccccc
Q psy7279 74 AQCVICLAPFQPGE---EVKELLCHHKFHSECLEPWLRE-RQHCPLCRNAV 120 (195)
Q Consensus 74 ~~C~IC~~~~~~~~---~~~~l~C~H~Fh~~Ci~~wl~~-~~~CP~Cr~~~ 120 (195)
..|-||-++|...+ .++.|.|||.||..|+...+.. ...||.||...
T Consensus 4 ~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~ 54 (296)
T KOG4185|consen 4 PECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETT 54 (296)
T ss_pred CceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCcc
Confidence 47999999998652 4677789999999999887765 45799999985
No 83
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=95.38 E-value=0.011 Score=37.01 Aligned_cols=45 Identities=22% Similarity=0.510 Sum_probs=32.5
Q ss_pred CccccccccccCCCceEEeCCCCccCccChhhhhccCccccccccccccC
Q psy7279 74 AQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQHCPLCRNAVSVG 123 (195)
Q Consensus 74 ~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 123 (195)
..|..|...-. ....+||+|..|..|..- .+-+.||+|..++...
T Consensus 8 ~~~~~~~~~~~---~~~~~pCgH~I~~~~f~~--~rYngCPfC~~~~~~~ 52 (55)
T PF14447_consen 8 QPCVFCGFVGT---KGTVLPCGHLICDNCFPG--ERYNGCPFCGTPFEFD 52 (55)
T ss_pred eeEEEcccccc---ccccccccceeeccccCh--hhccCCCCCCCcccCC
Confidence 35666666533 667889999999998643 3456799998887544
No 84
>KOG1952|consensus
Probab=95.35 E-value=0.0033 Score=58.97 Aligned_cols=47 Identities=30% Similarity=0.777 Sum_probs=34.3
Q ss_pred CCccccccccccCCCce-EEeCCCCccCccChhhhhccC-------ccccccccc
Q psy7279 73 AAQCVICLAPFQPGEEV-KELLCHHKFHSECLEPWLRER-------QHCPLCRNA 119 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~-~~l~C~H~Fh~~Ci~~wl~~~-------~~CP~Cr~~ 119 (195)
..+|.||.+.+.....+ ....|-|+||..||..|.+.. -.||.|...
T Consensus 191 ~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv 245 (950)
T KOG1952|consen 191 KYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSV 245 (950)
T ss_pred ceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccch
Confidence 66899999998743322 112377999999999998641 259999843
No 85
>PF04641 Rtf2: Rtf2 RING-finger
Probab=95.09 E-value=0.014 Score=48.47 Aligned_cols=54 Identities=19% Similarity=0.369 Sum_probs=40.8
Q ss_pred CCCccccccccccCCCceEEe-CCCCccCccChhhhhccCccccccccccccCCCC
Q psy7279 72 PAAQCVICLAPFQPGEEVKEL-LCHHKFHSECLEPWLRERQHCPLCRNAVSVGSIS 126 (195)
Q Consensus 72 ~~~~C~IC~~~~~~~~~~~~l-~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~~~~~ 126 (195)
....|+|....|......+.+ +|||+|...++...- ....||+|-.++...++.
T Consensus 112 ~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k-~~~~Cp~c~~~f~~~DiI 166 (260)
T PF04641_consen 112 GRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK-KSKKCPVCGKPFTEEDII 166 (260)
T ss_pred ceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc-ccccccccCCccccCCEE
Confidence 367899999998644344444 799999999998863 355799999998765543
No 86
>KOG2034|consensus
Probab=95.04 E-value=0.008 Score=56.71 Aligned_cols=35 Identities=29% Similarity=0.586 Sum_probs=28.8
Q ss_pred CCCccccccccccCCCceEEeCCCCccCccChhhhh
Q psy7279 72 PAAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWL 107 (195)
Q Consensus 72 ~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl 107 (195)
.++.|.+|...+... .-...||+|.||+.||.+..
T Consensus 816 p~d~C~~C~~~ll~~-pF~vf~CgH~FH~~Cl~~~v 850 (911)
T KOG2034|consen 816 PQDSCDHCGRPLLIK-PFYVFPCGHCFHRDCLIRHV 850 (911)
T ss_pred CccchHHhcchhhcC-cceeeeccchHHHHHHHHHH
Confidence 377899999987643 66777999999999997764
No 87
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=94.88 E-value=0.0058 Score=36.56 Aligned_cols=41 Identities=27% Similarity=0.829 Sum_probs=22.4
Q ss_pred cccccccccCCCceEEeCCCCccCccChhhhhccCc--ccccc
Q psy7279 76 CVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQ--HCPLC 116 (195)
Q Consensus 76 C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~--~CP~C 116 (195)
|.+|.+....|..-....|+-.+|..|+..+++... .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 677888776443222224999999999999997644 79987
No 88
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=94.82 E-value=0.029 Score=48.48 Aligned_cols=31 Identities=26% Similarity=0.795 Sum_probs=23.5
Q ss_pred CCCccCccChhhhhcc-------------CccccccccccccCC
Q psy7279 94 CHHKFHSECLEPWLRE-------------RQHCPLCRNAVSVGS 124 (195)
Q Consensus 94 C~H~Fh~~Ci~~wl~~-------------~~~CP~Cr~~~~~~~ 124 (195)
|...+|..|+.+|+.. +..||+||+.+..-+
T Consensus 311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCilD 354 (358)
T PF10272_consen 311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCILD 354 (358)
T ss_pred ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccceeee
Confidence 5677888999999853 235999999987543
No 89
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=94.53 E-value=0.0074 Score=36.58 Aligned_cols=44 Identities=23% Similarity=0.604 Sum_probs=25.8
Q ss_pred ccccccccccCCCceEEeCCC-CccCccChhhhhccCccccccccccccC
Q psy7279 75 QCVICLAPFQPGEEVKELLCH-HKFHSECLEPWLRERQHCPLCRNAVSVG 123 (195)
Q Consensus 75 ~C~IC~~~~~~~~~~~~l~C~-H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 123 (195)
.|.-|+-..+ ....|. |..|..|+...+.....||+|..+++.+
T Consensus 4 nCKsCWf~~k-----~Li~C~dHYLCl~CLt~ml~~s~~C~iC~~~LPtk 48 (50)
T PF03854_consen 4 NCKSCWFANK-----GLIKCSDHYLCLNCLTLMLSRSDRCPICGKPLPTK 48 (50)
T ss_dssp ---SS-S--S-----SEEE-SS-EEEHHHHHHT-SSSSEETTTTEE----
T ss_pred cChhhhhcCC-----CeeeecchhHHHHHHHHHhccccCCCcccCcCccc
Confidence 4666775533 234576 9999999999999999999999988753
No 90
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=94.35 E-value=0.016 Score=49.26 Aligned_cols=54 Identities=17% Similarity=0.424 Sum_probs=36.6
Q ss_pred CCCCccccccccccCCC-ceEEeCCCCccCccChhhhhc-cCccccccccccccCC
Q psy7279 71 APAAQCVICLAPFQPGE-EVKELLCHHKFHSECLEPWLR-ERQHCPLCRNAVSVGS 124 (195)
Q Consensus 71 ~~~~~C~IC~~~~~~~~-~~~~l~C~H~Fh~~Ci~~wl~-~~~~CP~Cr~~~~~~~ 124 (195)
++++.|+.|+|.+...+ ...-.+||...|..|-..--+ .+..||-||..+..+.
T Consensus 12 deed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~den 67 (480)
T COG5175 12 DEEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDDEN 67 (480)
T ss_pred cccccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhccccc
Confidence 33566999999887543 344557998877777433222 2568999999876543
No 91
>KOG1001|consensus
Probab=94.02 E-value=0.016 Score=54.14 Aligned_cols=50 Identities=32% Similarity=0.687 Sum_probs=40.4
Q ss_pred CccccccccccCCCceEEeCCCCccCccChhhhhcc--CccccccccccccCCCCC
Q psy7279 74 AQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRE--RQHCPLCRNAVSVGSISS 127 (195)
Q Consensus 74 ~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~--~~~CP~Cr~~~~~~~~~~ 127 (195)
..|.||++ . +.+...+|+|.||..|+..-+.. ...||.||..+.......
T Consensus 455 ~~c~ic~~-~---~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~l~s 506 (674)
T KOG1001|consen 455 HWCHICCD-L---DSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEKKLLS 506 (674)
T ss_pred cccccccc-c---ccceeecccchHHHHHHHhccccccCCCCcHHHHHHHHHHHhh
Confidence 68999999 3 47888899999999999887754 346999999887655543
No 92
>KOG2932|consensus
Probab=93.98 E-value=0.019 Score=48.34 Aligned_cols=43 Identities=30% Similarity=0.642 Sum_probs=29.4
Q ss_pred ccccccccccCCCceEEeCCCCccCccChhhhhccCccccccccccc
Q psy7279 75 QCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQHCPLCRNAVS 121 (195)
Q Consensus 75 ~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 121 (195)
.|--|--.+. -.-+.+||+|+||.+|... ...+.||.|-..+.
T Consensus 92 fCd~Cd~PI~--IYGRmIPCkHvFCl~CAr~--~~dK~Cp~C~d~Vq 134 (389)
T KOG2932|consen 92 FCDRCDFPIA--IYGRMIPCKHVFCLECARS--DSDKICPLCDDRVQ 134 (389)
T ss_pred eecccCCcce--eeecccccchhhhhhhhhc--CccccCcCcccHHH
Confidence 4655655443 2345568999999999754 34678999977654
No 93
>KOG1940|consensus
Probab=93.77 E-value=0.022 Score=47.42 Aligned_cols=46 Identities=33% Similarity=0.697 Sum_probs=37.9
Q ss_pred CCccccccccccCC-CceEEeCCCCccCccChhhhhccCcccccccc
Q psy7279 73 AAQCVICLAPFQPG-EEVKELLCHHKFHSECLEPWLRERQHCPLCRN 118 (195)
Q Consensus 73 ~~~C~IC~~~~~~~-~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~ 118 (195)
...|+||.+.+... ..+..++|+|.-|..|+......+-+||+|.+
T Consensus 158 ~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~y~CP~C~~ 204 (276)
T KOG1940|consen 158 EFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEGYTCPICSK 204 (276)
T ss_pred cCCCchhHHHhccccccCCccCcccchHHHHHHHHhccCCCCCcccc
Confidence 44599999976543 45677889999999999998877789999987
No 94
>KOG3053|consensus
Probab=93.36 E-value=0.018 Score=47.16 Aligned_cols=50 Identities=26% Similarity=0.611 Sum_probs=34.8
Q ss_pred CCCccccccccccCCCceE-EeCCC-----CccCccChhhhhccC--------ccccccccccc
Q psy7279 72 PAAQCVICLAPFQPGEEVK-ELLCH-----HKFHSECLEPWLRER--------QHCPLCRNAVS 121 (195)
Q Consensus 72 ~~~~C~IC~~~~~~~~~~~-~l~C~-----H~Fh~~Ci~~wl~~~--------~~CP~Cr~~~~ 121 (195)
.+..|-||+..=++..... +-||. |..|..|+..|+..+ .+||.|++++.
T Consensus 19 ~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYi 82 (293)
T KOG3053|consen 19 LERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYI 82 (293)
T ss_pred cceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchhe
Confidence 3778999998755332221 12553 889999999999532 25999999864
No 95
>KOG0827|consensus
Probab=93.35 E-value=0.0033 Score=54.20 Aligned_cols=50 Identities=22% Similarity=0.666 Sum_probs=42.2
Q ss_pred CCccccccccccCC-CceEEeCCCCccCccChhhhhccCcccccccccccc
Q psy7279 73 AAQCVICLAPFQPG-EEVKELLCHHKFHSECLEPWLRERQHCPLCRNAVSV 122 (195)
Q Consensus 73 ~~~C~IC~~~~~~~-~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 122 (195)
...|+||.+.++.. +....+-|+|.+|..||.+|+.....||.|+.+++.
T Consensus 196 v~sl~I~~~slK~~y~k~~~~~~g~~~~~~kL~k~L~~~~kl~~~~rel~~ 246 (465)
T KOG0827|consen 196 VGSLSICFESLKQNYDKISAIVCGHIYHHGKLSKWLATKRKLPSCRRELPK 246 (465)
T ss_pred HhhhHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHhHHHHhhhhh
Confidence 55799999988744 345566799999999999999998899999998864
No 96
>KOG1100|consensus
Probab=93.06 E-value=0.062 Score=43.13 Aligned_cols=40 Identities=30% Similarity=0.600 Sum_probs=30.5
Q ss_pred ccccccccccCCCceEEeCCCCc-cCccChhhhhccCccccccccccc
Q psy7279 75 QCVICLAPFQPGEEVKELLCHHK-FHSECLEPWLRERQHCPLCRNAVS 121 (195)
Q Consensus 75 ~C~IC~~~~~~~~~~~~l~C~H~-Fh~~Ci~~wl~~~~~CP~Cr~~~~ 121 (195)
.|-+|.+.-. .+..+||.|. +|..|-.. ...||+|+....
T Consensus 160 ~Cr~C~~~~~---~VlllPCrHl~lC~~C~~~----~~~CPiC~~~~~ 200 (207)
T KOG1100|consen 160 SCRKCGEREA---TVLLLPCRHLCLCGICDES----LRICPICRSPKT 200 (207)
T ss_pred cceecCcCCc---eEEeecccceEeccccccc----CccCCCCcChhh
Confidence 3888988644 7888899974 88888754 346999988653
No 97
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=93.03 E-value=0.048 Score=41.59 Aligned_cols=53 Identities=30% Similarity=0.647 Sum_probs=33.7
Q ss_pred CCccccccccccCCCceEEeCCC-------------CccCccChhhhhcc------------------------------
Q psy7279 73 AAQCVICLAPFQPGEEVKELLCH-------------HKFHSECLEPWLRE------------------------------ 109 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l~C~-------------H~Fh~~Ci~~wl~~------------------------------ 109 (195)
+..|+||||.-. ..+.|-|. -.-|..|+.+.-+.
T Consensus 2 d~~CpICme~PH---NAVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkka~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (162)
T PF07800_consen 2 DVTCPICMEHPH---NAVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKKAYGKSSSSSSQSSSSAPSDSSSSESSESQEQ 78 (162)
T ss_pred CccCceeccCCC---ceEEEEeccccCCccccccCCccchhHHHHHHHHHhcCCCCccccccccCcCCCccccccccccc
Confidence 568999999755 44444332 22356688765431
Q ss_pred -CccccccccccccCCCCCC
Q psy7279 110 -RQHCPLCRNAVSVGSISSE 128 (195)
Q Consensus 110 -~~~CP~Cr~~~~~~~~~~~ 128 (195)
...||+||..+.......+
T Consensus 79 ~~L~CPLCRG~V~GWtvve~ 98 (162)
T PF07800_consen 79 PELACPLCRGEVKGWTVVEP 98 (162)
T ss_pred ccccCccccCceeceEEchH
Confidence 1249999999976655443
No 98
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=92.14 E-value=0.1 Score=32.70 Aligned_cols=31 Identities=23% Similarity=0.753 Sum_probs=27.3
Q ss_pred CCccccccccccCCCceEEeC-CCCccCccCh
Q psy7279 73 AAQCVICLAPFQPGEEVKELL-CHHKFHSECL 103 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l~-C~H~Fh~~Ci 103 (195)
...|.+|-+.|..+++.++.| |+-.+|+.|-
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~ 36 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDCW 36 (54)
T ss_pred CccChhhCCcccCCCCEEECCCCCCcccHHHH
Confidence 457999999998888888888 9999999994
No 99
>KOG2817|consensus
Probab=92.00 E-value=0.079 Score=45.99 Aligned_cols=46 Identities=17% Similarity=0.372 Sum_probs=38.5
Q ss_pred CCccccccccccCCCceEEeCCCCccCccChhhhhccC---cccccccc
Q psy7279 73 AAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRER---QHCPLCRN 118 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~---~~CP~Cr~ 118 (195)
-..|||=.+.-.+.++|..|.|||+.+..-+.+..+.. ..||.|=.
T Consensus 334 vF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~ 382 (394)
T KOG2817|consen 334 VFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPV 382 (394)
T ss_pred eeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCc
Confidence 45899988888888899999999999999998887653 46999943
No 100
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=91.71 E-value=0.052 Score=40.23 Aligned_cols=49 Identities=18% Similarity=0.400 Sum_probs=35.8
Q ss_pred CCccccccccccCCCceEEeC---CCCccCccChhhhhc---cCccccccccccccC
Q psy7279 73 AAQCVICLAPFQPGEEVKELL---CHHKFHSECLEPWLR---ERQHCPLCRNAVSVG 123 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l~---C~H~Fh~~Ci~~wl~---~~~~CP~Cr~~~~~~ 123 (195)
-.+|-||.|...+ +...-| ||-..|..|-...++ .+..||.|++.+...
T Consensus 80 lYeCnIC~etS~e--e~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss 134 (140)
T PF05290_consen 80 LYECNICKETSAE--ERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSS 134 (140)
T ss_pred ceeccCcccccch--hhcCCcccccchHHHHHHHHHHHHHcccCCCCCccccccccc
Confidence 5689999998662 222223 999999999776554 377899999988654
No 101
>KOG0298|consensus
Probab=91.50 E-value=0.035 Score=54.53 Aligned_cols=45 Identities=29% Similarity=0.651 Sum_probs=37.8
Q ss_pred CCccccccccccCCCceEEeCCCCccCccChhhhhccCccccccccc
Q psy7279 73 AAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQHCPLCRNA 119 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~ 119 (195)
...|.||++.+.. ...+..|+|.+|..|+..|+..+..||.|+..
T Consensus 1153 ~~~c~ic~dil~~--~~~I~~cgh~~c~~c~~~~l~~~s~~~~~ksi 1197 (1394)
T KOG0298|consen 1153 HFVCEICLDILRN--QGGIAGCGHEPCCRCDELWLYASSRCPICKSI 1197 (1394)
T ss_pred ccchHHHHHHHHh--cCCeeeechhHhhhHHHHHHHHhccCcchhhh
Confidence 4489999999872 33455699999999999999999999999843
No 102
>KOG4367|consensus
Probab=91.31 E-value=0.075 Score=46.81 Aligned_cols=33 Identities=24% Similarity=0.524 Sum_probs=29.2
Q ss_pred CCccccccccccCCCceEEeCCCCccCccChhhhhc
Q psy7279 73 AAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLR 108 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~ 108 (195)
+..|+||...|+ ++++|+|+|..|..|...-+.
T Consensus 4 elkc~vc~~f~~---epiil~c~h~lc~~ca~~~~~ 36 (699)
T KOG4367|consen 4 ELKCPVCGSFYR---EPIILPCSHNLCQACARNILV 36 (699)
T ss_pred cccCceehhhcc---CceEeecccHHHHHHHHhhcc
Confidence 668999999998 899999999999999876554
No 103
>KOG3899|consensus
Probab=90.64 E-value=0.04 Score=46.04 Aligned_cols=32 Identities=22% Similarity=0.674 Sum_probs=24.2
Q ss_pred CCCccCccChhhhhc-------------cCccccccccccccCCC
Q psy7279 94 CHHKFHSECLEPWLR-------------ERQHCPLCRNAVSVGSI 125 (195)
Q Consensus 94 C~H~Fh~~Ci~~wl~-------------~~~~CP~Cr~~~~~~~~ 125 (195)
|...+|..|+.+|+. .+.+||+||+.+...+.
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci~dv 369 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCIRDV 369 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEEeee
Confidence 667788899988873 24479999999876543
No 104
>KOG3002|consensus
Probab=89.99 E-value=0.18 Score=42.65 Aligned_cols=42 Identities=26% Similarity=0.702 Sum_probs=32.2
Q ss_pred CCccccccccccCCCceEEeCC--CCccCccChhhhhccCccccccccccc
Q psy7279 73 AAQCVICLAPFQPGEEVKELLC--HHKFHSECLEPWLRERQHCPLCRNAVS 121 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l~C--~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 121 (195)
-.+|+||.+.+. .+ +..| ||.-|..|-. +....||.||.++.
T Consensus 48 lleCPvC~~~l~---~P-i~QC~nGHlaCssC~~---~~~~~CP~Cr~~~g 91 (299)
T KOG3002|consen 48 LLDCPVCFNPLS---PP-IFQCDNGHLACSSCRT---KVSNKCPTCRLPIG 91 (299)
T ss_pred hccCchhhccCc---cc-ceecCCCcEehhhhhh---hhcccCCccccccc
Confidence 568999999987 33 3446 6888888864 44678999999987
No 105
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=88.50 E-value=0.25 Score=30.38 Aligned_cols=42 Identities=24% Similarity=0.608 Sum_probs=20.0
Q ss_pred CccccccccccCCCceEEeCCCCccCccChhhhhcc-----Ccccccccc
Q psy7279 74 AQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRE-----RQHCPLCRN 118 (195)
Q Consensus 74 ~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~-----~~~CP~Cr~ 118 (195)
..|+|....+. -.++...|.|.-|.+ +..|+.. .-.||+|.+
T Consensus 3 L~CPls~~~i~--~P~Rg~~C~H~~CFD-l~~fl~~~~~~~~W~CPiC~~ 49 (50)
T PF02891_consen 3 LRCPLSFQRIR--IPVRGKNCKHLQCFD-LESFLESNQRTPKWKCPICNK 49 (50)
T ss_dssp SB-TTTSSB-S--SEEEETT--SS--EE-HHHHHHHHHHS---B-TTT--
T ss_pred eeCCCCCCEEE--eCccCCcCcccceEC-HHHHHHHhhccCCeECcCCcC
Confidence 46888888877 234444599986654 4566643 226999975
No 106
>KOG4362|consensus
Probab=87.36 E-value=0.14 Score=47.70 Aligned_cols=51 Identities=29% Similarity=0.673 Sum_probs=39.7
Q ss_pred CCccccccccccCCCceEEeCCCCccCccChhhhhcc---CccccccccccccCCCC
Q psy7279 73 AAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRE---RQHCPLCRNAVSVGSIS 126 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~---~~~CP~Cr~~~~~~~~~ 126 (195)
..+|+||+..+. .+..+.|-|.||..|+..-+.. ...||+|+..+......
T Consensus 21 ~lEc~ic~~~~~---~p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK~s~~ 74 (684)
T KOG4362|consen 21 ILECPICLEHVK---EPSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIEKRSLR 74 (684)
T ss_pred hccCCceeEEee---ccchhhhhHHHHhhhhhceeeccCccccchhhhhhhhhhhcc
Confidence 568999999988 5577889999999998765543 45799999777554443
No 107
>KOG3800|consensus
Probab=86.64 E-value=0.35 Score=40.46 Aligned_cols=48 Identities=19% Similarity=0.484 Sum_probs=33.9
Q ss_pred ccccccccccCCCceEEe--CCCCccCccChhhhhcc-Ccccccccccccc
Q psy7279 75 QCVICLAPFQPGEEVKEL--LCHHKFHSECLEPWLRE-RQHCPLCRNAVSV 122 (195)
Q Consensus 75 ~C~IC~~~~~~~~~~~~l--~C~H~Fh~~Ci~~wl~~-~~~CP~Cr~~~~~ 122 (195)
.|++|....-..-....+ +|+|..|..|....+.. ...||.|-..+-.
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk 52 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRK 52 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhh
Confidence 589998753322222222 69999999999988765 5579999776643
No 108
>KOG1812|consensus
Probab=85.66 E-value=0.2 Score=43.96 Aligned_cols=37 Identities=22% Similarity=0.585 Sum_probs=27.1
Q ss_pred CCccccccccccCC-CceEEeCCCCccCccChhhhhcc
Q psy7279 73 AAQCVICLAPFQPG-EEVKELLCHHKFHSECLEPWLRE 109 (195)
Q Consensus 73 ~~~C~IC~~~~~~~-~~~~~l~C~H~Fh~~Ci~~wl~~ 109 (195)
...|.||....... .......|+|.||..|..+.+..
T Consensus 146 ~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev 183 (384)
T KOG1812|consen 146 KEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEV 183 (384)
T ss_pred cccCccCccccccHhhhHHHhcccchhhhHHhHHHhhh
Confidence 66899999444332 33335569999999999988864
No 109
>KOG1609|consensus
Probab=85.62 E-value=0.28 Score=41.13 Aligned_cols=51 Identities=22% Similarity=0.504 Sum_probs=37.4
Q ss_pred CCccccccccccCCCc-eEEeCCC-----CccCccChhhhhc--cCccccccccccccC
Q psy7279 73 AAQCVICLAPFQPGEE-VKELLCH-----HKFHSECLEPWLR--ERQHCPLCRNAVSVG 123 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~-~~~l~C~-----H~Fh~~Ci~~wl~--~~~~CP~Cr~~~~~~ 123 (195)
+..|-||.+....... ....||. +..|..|+..|+. .+..|.+|...+...
T Consensus 78 ~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~~ 136 (323)
T KOG1609|consen 78 GPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFINV 136 (323)
T ss_pred CCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeeecccccceec
Confidence 4689999997653221 4556754 5679999999997 466899998876544
No 110
>KOG0802|consensus
Probab=83.63 E-value=0.54 Score=43.09 Aligned_cols=47 Identities=30% Similarity=0.792 Sum_probs=37.5
Q ss_pred CCCccccccccccCCCceEEeCCCCccCccChhhhhccCccccccccccccCCC
Q psy7279 72 PAAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQHCPLCRNAVSVGSI 125 (195)
Q Consensus 72 ~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~~~~ 125 (195)
....|.||+... ..+..+|. |..|+..|+..+..||+|+..+..++.
T Consensus 478 ~~~~~~~~~~~~----~~~~~~~~---~~~~l~~~~~~~~~~pl~~~~~~~~~~ 524 (543)
T KOG0802|consen 478 PNDVCAICYQEM----SARITPCS---HALCLRKWLYVQEVCPLCHTYMKEDDF 524 (543)
T ss_pred ccCcchHHHHHH----Hhcccccc---chhHHHhhhhhccccCCCchhhhcccc
Confidence 367899999987 33445677 889999999999999999988765544
No 111
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=83.60 E-value=0.24 Score=40.41 Aligned_cols=49 Identities=20% Similarity=0.579 Sum_probs=35.9
Q ss_pred CCccccccccccCCCceEEe--C-CCCccCccChhhhhcc-Ccccc--ccccccc
Q psy7279 73 AAQCVICLAPFQPGEEVKEL--L-CHHKFHSECLEPWLRE-RQHCP--LCRNAVS 121 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l--~-C~H~Fh~~Ci~~wl~~-~~~CP--~Cr~~~~ 121 (195)
+..|+||..+.-..-.+..+ | |-|..|..|..+-+.. ...|| -|-+.+-
T Consensus 10 d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kILR 64 (314)
T COG5220 10 DRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKILR 64 (314)
T ss_pred cccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHH
Confidence 66899999864433233333 5 9999999999998865 56799 7866554
No 112
>KOG0309|consensus
Probab=83.49 E-value=0.4 Score=45.08 Aligned_cols=39 Identities=31% Similarity=0.710 Sum_probs=27.9
Q ss_pred cccccccccCCCceEEeCCCCccCccChhhhhccCccccc
Q psy7279 76 CVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQHCPL 115 (195)
Q Consensus 76 C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~ 115 (195)
|.||--.+. +.......|+|+-|..|...|+.....||.
T Consensus 1031 C~~C~l~V~-gss~~Cg~C~Hv~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1031 CAICHLAVR-GSSNFCGTCGHVGHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred eeeEeeEee-ccchhhccccccccHHHHHHHHhcCCcCCC
Confidence 444443322 223455569999999999999999889884
No 113
>PLN02436 cellulose synthase A
Probab=81.03 E-value=3.8 Score=40.36 Aligned_cols=50 Identities=26% Similarity=0.497 Sum_probs=35.5
Q ss_pred CCcccccccccc---CCCceEEeC-CCCccCccChhhhhc-cCcccccccccccc
Q psy7279 73 AAQCVICLAPFQ---PGEEVKELL-CHHKFHSECLEPWLR-ERQHCPLCRNAVSV 122 (195)
Q Consensus 73 ~~~C~IC~~~~~---~~~~~~~l~-C~H~Fh~~Ci~~wl~-~~~~CP~Cr~~~~~ 122 (195)
...|.||-+++. +|+.-+... |+--.|+.|.+-=.+ .++.||.|++.+..
T Consensus 36 ~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~r 90 (1094)
T PLN02436 36 GQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKR 90 (1094)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchhh
Confidence 558999999864 344444444 888899999843222 36789999998863
No 114
>KOG1812|consensus
Probab=80.85 E-value=0.88 Score=39.93 Aligned_cols=44 Identities=25% Similarity=0.489 Sum_probs=31.2
Q ss_pred CCcccccccccc--CCCceEEeCCCCccCccChhhhhccCcccccc
Q psy7279 73 AAQCVICLAPFQ--PGEEVKELLCHHKFHSECLEPWLRERQHCPLC 116 (195)
Q Consensus 73 ~~~C~IC~~~~~--~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~C 116 (195)
-..|++|.-.+. .|-...+..|+|.||+.|...|...+..|..|
T Consensus 306 wr~CpkC~~~ie~~~GCnhm~CrC~~~fcy~C~~~~~~~~~~~~~~ 351 (384)
T KOG1812|consen 306 WRQCPKCKFMIELSEGCNHMTCRCGHQFCYMCGGDWKTHNGECYEC 351 (384)
T ss_pred cCcCcccceeeeecCCcceEEeeccccchhhcCcchhhCCccccCc
Confidence 447888887654 23233444599999999999998877777554
No 115
>KOG0269|consensus
Probab=80.82 E-value=1 Score=42.43 Aligned_cols=41 Identities=22% Similarity=0.449 Sum_probs=31.6
Q ss_pred CCccccccccccCCCceEEeC-CCCccCccChhhhhccCccccc
Q psy7279 73 AAQCVICLAPFQPGEEVKELL-CHHKFHSECLEPWLRERQHCPL 115 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l~-C~H~Fh~~Ci~~wl~~~~~CP~ 115 (195)
...|.+|-..+. ......+ |+|.-|..|+.+|+.....||.
T Consensus 779 ~~~CtVC~~vi~--G~~~~c~~C~H~gH~sh~~sw~~~~s~ca~ 820 (839)
T KOG0269|consen 779 SAKCTVCDLVIR--GVDVWCQVCGHGGHDSHLKSWFFKASPCAK 820 (839)
T ss_pred hcCceeecceee--eeEeecccccccccHHHHHHHHhcCCCCcc
Confidence 447889988766 1223333 9999999999999998888876
No 116
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=80.66 E-value=0.67 Score=44.01 Aligned_cols=56 Identities=23% Similarity=0.517 Sum_probs=40.6
Q ss_pred CCccccccccccCCCceEEeCCC-----CccCccChhhhhcc--CccccccccccccCCCCCCC
Q psy7279 73 AAQCVICLAPFQPGEEVKELLCH-----HKFHSECLEPWLRE--RQHCPLCRNAVSVGSISSEN 129 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l~C~-----H~Fh~~Ci~~wl~~--~~~CP~Cr~~~~~~~~~~~~ 129 (195)
+..|.||..+-..+ .+--=||+ ...|..|+..|+.- ...|-+|+.++.-++.-.++
T Consensus 12 ~~~CRICr~e~~~d-~pLfhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~Fk~IY~e~ 74 (1175)
T COG5183 12 KRSCRICRTEDIRD-DPLFHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKFKDIYKED 74 (1175)
T ss_pred chhceeecCCCCCC-CcCcccccccchhHHHHHHHHHHHHhcCCCcceeeecceeeeeeecccC
Confidence 57899999875544 34344665 35799999999964 55799999998766654443
No 117
>KOG0825|consensus
Probab=79.52 E-value=0.7 Score=43.74 Aligned_cols=53 Identities=13% Similarity=0.210 Sum_probs=38.0
Q ss_pred CCccccccccccCC-CceEEeC---CCCccCccChhhhhcc------CccccccccccccCCC
Q psy7279 73 AAQCVICLAPFQPG-EEVKELL---CHHKFHSECLEPWLRE------RQHCPLCRNAVSVGSI 125 (195)
Q Consensus 73 ~~~C~IC~~~~~~~-~~~~~l~---C~H~Fh~~Ci~~wl~~------~~~CP~Cr~~~~~~~~ 125 (195)
...|.||.-++... +....+| |.|.||..||..|..+ +-.|++|..-|.....
T Consensus 96 s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR 158 (1134)
T KOG0825|consen 96 SDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSR 158 (1134)
T ss_pred ccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhh
Confidence 55788888887742 1233445 9999999999999854 3358999887765443
No 118
>PLN02189 cellulose synthase
Probab=78.78 E-value=4.8 Score=39.58 Aligned_cols=49 Identities=22% Similarity=0.445 Sum_probs=35.0
Q ss_pred CCcccccccccc---CCCceEEeC-CCCccCccChhhhh-ccCccccccccccc
Q psy7279 73 AAQCVICLAPFQ---PGEEVKELL-CHHKFHSECLEPWL-RERQHCPLCRNAVS 121 (195)
Q Consensus 73 ~~~C~IC~~~~~---~~~~~~~l~-C~H~Fh~~Ci~~wl-~~~~~CP~Cr~~~~ 121 (195)
...|.||-+++. .|+.-+... |+--.|+.|.+-=. ..++.||.|++.+.
T Consensus 34 ~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 34 GQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 558999999876 233334444 88889999984322 23678999999886
No 119
>KOG3579|consensus
Probab=78.04 E-value=2.1 Score=35.87 Aligned_cols=36 Identities=17% Similarity=0.370 Sum_probs=26.7
Q ss_pred CCccccccccccCCCceEEeC--CCCccCccChhhhhcc
Q psy7279 73 AAQCVICLAPFQPGEEVKELL--CHHKFHSECLEPWLRE 109 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l~--C~H~Fh~~Ci~~wl~~ 109 (195)
...|.+|.|.+++. ..+..| =.|.||+.|-+.-++.
T Consensus 268 pLcCTLC~ERLEDT-HFVQCPSVp~HKFCFPCSResIK~ 305 (352)
T KOG3579|consen 268 PLCCTLCHERLEDT-HFVQCPSVPSHKFCFPCSRESIKQ 305 (352)
T ss_pred ceeehhhhhhhccC-ceeecCCCcccceecccCHHHHHh
Confidence 46899999999833 333333 3599999999888764
No 120
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=77.45 E-value=1.1 Score=27.64 Aligned_cols=42 Identities=26% Similarity=0.594 Sum_probs=20.3
Q ss_pred cccccccccCCC------ceEEeC-CCCccCccChhhhhccCccccccc
Q psy7279 76 CVICLAPFQPGE------EVKELL-CHHKFHSECLEPWLRERQHCPLCR 117 (195)
Q Consensus 76 C~IC~~~~~~~~------~~~~l~-C~H~Fh~~Ci~~wl~~~~~CP~Cr 117 (195)
|.-|+..|.... ....-+ |++.||.+|=.---..-..||-|-
T Consensus 2 CfgC~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 2 CFGCQKPFPDGPEKKADSSRYRCPKCKNHFCIDCDVFIHETLHNCPGCE 50 (51)
T ss_dssp ETTTTEE-TTS-------EEE--TTTT--B-HHHHHTTTTTS-SSSTT-
T ss_pred CccCCCCCCCcccccccCCeEECCCCCCccccCcChhhhccccCCcCCC
Confidence 556777766431 223334 999999999543223445799883
No 121
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=76.11 E-value=1.3 Score=23.36 Aligned_cols=10 Identities=30% Similarity=0.531 Sum_probs=5.1
Q ss_pred cccccccccc
Q psy7279 75 QCVICLAPFQ 84 (195)
Q Consensus 75 ~C~IC~~~~~ 84 (195)
.|+-|...+.
T Consensus 2 ~CP~C~~~V~ 11 (26)
T PF10571_consen 2 TCPECGAEVP 11 (26)
T ss_pred cCCCCcCCch
Confidence 3555555543
No 122
>KOG2807|consensus
Probab=76.01 E-value=2.1 Score=36.61 Aligned_cols=45 Identities=18% Similarity=0.420 Sum_probs=32.2
Q ss_pred CCccccccccccCCCceEEeCCCCccCccChhhhhccCccccccc
Q psy7279 73 AAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQHCPLCR 117 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr 117 (195)
...|-.|.+........+.-.|++.||.+|-.---..-..||-|.
T Consensus 330 ~~~Cf~C~~~~~~~~~y~C~~Ck~~FCldCDv~iHesLh~CpgCe 374 (378)
T KOG2807|consen 330 SRFCFACQGELLSSGRYRCESCKNVFCLDCDVFIHESLHNCPGCE 374 (378)
T ss_pred CcceeeeccccCCCCcEEchhccceeeccchHHHHhhhhcCCCcC
Confidence 445999988777554555556999999999544334445799995
No 123
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=74.33 E-value=7.5 Score=38.41 Aligned_cols=49 Identities=24% Similarity=0.450 Sum_probs=34.4
Q ss_pred CCccccccccccC---CCceEEeC-CCCccCccChhhh-hccCccccccccccc
Q psy7279 73 AAQCVICLAPFQP---GEEVKELL-CHHKFHSECLEPW-LRERQHCPLCRNAVS 121 (195)
Q Consensus 73 ~~~C~IC~~~~~~---~~~~~~l~-C~H~Fh~~Ci~~w-l~~~~~CP~Cr~~~~ 121 (195)
...|.||-+++.. |+.-+... |+--.|+.|-+-= -..++.||.|++.+.
T Consensus 17 ~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYk 70 (1079)
T PLN02638 17 GQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYK 70 (1079)
T ss_pred CceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 5589999998753 33333333 8888999997432 234778999999886
No 124
>KOG2068|consensus
Probab=72.13 E-value=5 Score=34.30 Aligned_cols=49 Identities=18% Similarity=0.449 Sum_probs=33.6
Q ss_pred CCccccccccccCCC-ceEEeCCCCccCccChhhhhccCccccccccccc
Q psy7279 73 AAQCVICLAPFQPGE-EVKELLCHHKFHSECLEPWLRERQHCPLCRNAVS 121 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~-~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 121 (195)
...|+||.+.....+ ...-.+|++..|..|+..-...+..||.||....
T Consensus 249 ~~s~p~~~~~~~~~d~~~lP~~~~~~~~l~~~~t~~~~~~~~~~~rk~~~ 298 (327)
T KOG2068|consen 249 PPSCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTISDGDGRCPGCRKPYE 298 (327)
T ss_pred CCCCCCCCCcccccccccccccccccchhhhhhcccccCCCCCccCCccc
Confidence 468999999763322 2223347777777777666667889999996553
No 125
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=72.10 E-value=0.64 Score=30.70 Aligned_cols=40 Identities=18% Similarity=0.482 Sum_probs=21.7
Q ss_pred CccccccccccCCCceEEeCCCCccCccChhhhhccCccccccccccc
Q psy7279 74 AQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQHCPLCRNAVS 121 (195)
Q Consensus 74 ~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 121 (195)
..|+.|..++.... +|.+|..|-.. +.....||.|..++.
T Consensus 2 ~~CP~C~~~L~~~~-------~~~~C~~C~~~-~~~~a~CPdC~~~Le 41 (70)
T PF07191_consen 2 NTCPKCQQELEWQG-------GHYHCEACQKD-YKKEAFCPDCGQPLE 41 (70)
T ss_dssp -B-SSS-SBEEEET-------TEEEETTT--E-EEEEEE-TTT-SB-E
T ss_pred CcCCCCCCccEEeC-------CEEECcccccc-ceecccCCCcccHHH
Confidence 47999998866221 66677777654 345667999988774
No 126
>KOG3799|consensus
Probab=71.40 E-value=1.2 Score=33.22 Aligned_cols=50 Identities=28% Similarity=0.558 Sum_probs=30.9
Q ss_pred CCCCcccccccc-ccCCCceEEeCCCCccCccChhhhh-ccCc---ccccccccc
Q psy7279 71 APAAQCVICLAP-FQPGEEVKELLCHHKFHSECLEPWL-RERQ---HCPLCRNAV 120 (195)
Q Consensus 71 ~~~~~C~IC~~~-~~~~~~~~~l~C~H~Fh~~Ci~~wl-~~~~---~CP~Cr~~~ 120 (195)
..+..|.||+.. |.+|--....-|.-.||..|-.+-- ++++ .|-+|+...
T Consensus 63 ~ddatC~IC~KTKFADG~GH~C~YCq~r~CARCGGrv~lrsNKv~wvcnlc~k~q 117 (169)
T KOG3799|consen 63 GDDATCGICHKTKFADGCGHNCSYCQTRFCARCGGRVSLRSNKVMWVCNLCRKQQ 117 (169)
T ss_pred CcCcchhhhhhcccccccCcccchhhhhHHHhcCCeeeeccCceEEeccCCcHHH
Confidence 347899999984 5444333333466677777876543 2233 588887654
No 127
>KOG4718|consensus
Probab=71.18 E-value=1.6 Score=35.05 Aligned_cols=43 Identities=23% Similarity=0.738 Sum_probs=34.1
Q ss_pred CccccccccccCCCceEEeCCCCccCccChhhhhccCcccccccc
Q psy7279 74 AQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQHCPLCRN 118 (195)
Q Consensus 74 ~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~ 118 (195)
..|.+|....-. ..+.-.|+-.+|..|+...++....||.|..
T Consensus 182 k~Cn~Ch~LvIq--g~rCg~c~i~~h~~c~qty~q~~~~cphc~d 224 (235)
T KOG4718|consen 182 KNCNLCHCLVIQ--GIRCGSCNIQYHRGCIQTYLQRRDICPHCGD 224 (235)
T ss_pred HHHhHhHHHhhe--eeccCcccchhhhHHHHHHhcccCcCCchhc
Confidence 479999987662 2333358889999999999999999999944
No 128
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=70.29 E-value=3.4 Score=32.90 Aligned_cols=39 Identities=31% Similarity=0.764 Sum_probs=26.4
Q ss_pred CCcccccccc-----ccCCCceEEeC-CCCccCccChhhhhccCccccccc
Q psy7279 73 AAQCVICLAP-----FQPGEEVKELL-CHHKFHSECLEPWLRERQHCPLCR 117 (195)
Q Consensus 73 ~~~C~IC~~~-----~~~~~~~~~l~-C~H~Fh~~Ci~~wl~~~~~CP~Cr 117 (195)
...|-+|-+. |.. +.+...+ |+-.||..|..+ ..||.|.
T Consensus 152 GfiCe~C~~~~~IfPF~~-~~~~~C~~C~~v~H~~C~~~-----~~CpkC~ 196 (202)
T PF13901_consen 152 GFICEICNSDDIIFPFQI-DTTVRCPKCKSVFHKSCFRK-----KSCPKCA 196 (202)
T ss_pred CCCCccCCCCCCCCCCCC-CCeeeCCcCccccchhhcCC-----CCCCCcH
Confidence 5578888752 122 1344444 999999999763 6699994
No 129
>KOG2066|consensus
Probab=69.99 E-value=2.3 Score=40.32 Aligned_cols=43 Identities=30% Similarity=0.671 Sum_probs=30.9
Q ss_pred CCccccccccccC-C---CceEEeCCCCccCccChhhhhccCcccccc
Q psy7279 73 AAQCVICLAPFQP-G---EEVKELLCHHKFHSECLEPWLRERQHCPLC 116 (195)
Q Consensus 73 ~~~C~IC~~~~~~-~---~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~C 116 (195)
+..|..|.+.... + +..+.+.|+|.||..|+..-..+++ |-.|
T Consensus 784 e~rc~~c~~~~l~~~~~~~~~~v~~c~h~yhk~c~~~~~~~~~-~~~~ 830 (846)
T KOG2066|consen 784 EERCSSCFEPNLPSGAAFDSVVVFHCGHMYHKECLMMESLRNA-CNIE 830 (846)
T ss_pred hhhhhhhcccccccCcccceeeEEEccchhhhcccccHHHhcc-cChh
Confidence 5579999986542 2 3577788999999999976554443 5555
No 130
>KOG1829|consensus
Probab=69.14 E-value=1.2 Score=41.03 Aligned_cols=40 Identities=28% Similarity=0.720 Sum_probs=24.7
Q ss_pred CCcccccccc-----ccCCCceE-EeCCCCccCccChhhhhccCcccccc
Q psy7279 73 AAQCVICLAP-----FQPGEEVK-ELLCHHKFHSECLEPWLRERQHCPLC 116 (195)
Q Consensus 73 ~~~C~IC~~~-----~~~~~~~~-~l~C~H~Fh~~Ci~~wl~~~~~CP~C 116 (195)
...|.+|... |. .+.+. ...|+++||..|... ...-||.|
T Consensus 511 gfiCe~Cq~~~iiyPF~-~~~~~rC~~C~avfH~~C~~r---~s~~CPrC 556 (580)
T KOG1829|consen 511 GFICELCQHNDIIYPFE-TRNTRRCSTCLAVFHKKCLRR---KSPCCPRC 556 (580)
T ss_pred eeeeeeccCCCcccccc-cccceeHHHHHHHHHHHHHhc---cCCCCCch
Confidence 5567788442 21 12233 335999999999653 34449999
No 131
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=68.91 E-value=3 Score=25.08 Aligned_cols=43 Identities=26% Similarity=0.617 Sum_probs=27.8
Q ss_pred ccccccccccCCCceEEe-CCCCccCccChhhhhc------cCcccccccc
Q psy7279 75 QCVICLAPFQPGEEVKEL-LCHHKFHSECLEPWLR------ERQHCPLCRN 118 (195)
Q Consensus 75 ~C~IC~~~~~~~~~~~~l-~C~H~Fh~~Ci~~wl~------~~~~CP~Cr~ 118 (195)
.|.||..... .+..+.- .|+..||..|+..-.. ..-.||.|+.
T Consensus 1 ~C~vC~~~~~-~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~~ 50 (51)
T PF00628_consen 1 YCPVCGQSDD-DGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCRP 50 (51)
T ss_dssp EBTTTTSSCT-TSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHHH
T ss_pred eCcCCCCcCC-CCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCcC
Confidence 3888988433 2233333 4999999999876443 1346888853
No 132
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=68.67 E-value=6.5 Score=21.55 Aligned_cols=37 Identities=27% Similarity=0.674 Sum_probs=24.1
Q ss_pred ccccccccccCCCceEEeCCCCccCccChhhhhccCcccccccccc
Q psy7279 75 QCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQHCPLCRNAV 120 (195)
Q Consensus 75 ~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~ 120 (195)
.|..|.+.+...+ .....=+..||..|+ .|..|...+
T Consensus 1 ~C~~C~~~i~~~~-~~~~~~~~~~H~~Cf--------~C~~C~~~L 37 (39)
T smart00132 1 KCAGCGKPIRGGE-LVLRALGKVWHPECF--------KCSKCGKPL 37 (39)
T ss_pred CccccCCcccCCc-EEEEeCCccccccCC--------CCcccCCcC
Confidence 3778888776431 222334678998886 588887665
No 134
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=67.88 E-value=6.4 Score=28.45 Aligned_cols=45 Identities=22% Similarity=0.451 Sum_probs=32.0
Q ss_pred CCccccccccccCCC-----------ceEEeCCCCccCccChhhhhccCccccccc
Q psy7279 73 AAQCVICLAPFQPGE-----------EVKELLCHHKFHSECLEPWLRERQHCPLCR 117 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~-----------~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr 117 (195)
...|.-|+..|.... ...--.|++.||.+|-.-+-..-..||-|-
T Consensus 55 ~~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPGC~ 110 (112)
T TIGR00622 55 SRFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHESLHCCPGCI 110 (112)
T ss_pred CCcccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhhhccCCcCCC
Confidence 346999999886321 111234999999999777766667799985
No 135
>KOG1815|consensus
Probab=66.82 E-value=1.7 Score=38.74 Aligned_cols=35 Identities=31% Similarity=0.699 Sum_probs=29.1
Q ss_pred CCccccccccccCCCceEEeCCCCccCccChhhhhcc
Q psy7279 73 AAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRE 109 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~ 109 (195)
...|.||.+.+.. ....+.|+|.||..|....+..
T Consensus 70 ~~~c~ic~~~~~~--~~~~~~c~H~~c~~cw~~yl~~ 104 (444)
T KOG1815|consen 70 DVQCGICVESYDG--EIIGLGCGHPFCPPCWTGYLGT 104 (444)
T ss_pred cccCCcccCCCcc--hhhhcCCCcHHHHHHHHHHhhh
Confidence 6789999999873 4667789999999999887754
No 136
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=66.71 E-value=2.6 Score=35.87 Aligned_cols=45 Identities=20% Similarity=0.329 Sum_probs=34.1
Q ss_pred CCccccccccccCCCceEEeCCCCccCccChhhhhcc---Cccccccc
Q psy7279 73 AAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRE---RQHCPLCR 117 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~---~~~CP~Cr 117 (195)
-..|++-.+.-...+.+..+.|||+.-..-+....+. ...||.|=
T Consensus 336 ~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP 383 (396)
T COG5109 336 LFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCP 383 (396)
T ss_pred eeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCC
Confidence 4579987777777778999999999887776665543 33699993
No 137
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=65.75 E-value=4.2 Score=26.17 Aligned_cols=35 Identities=23% Similarity=0.413 Sum_probs=18.0
Q ss_pred CCccccccccccCCCceEEe-CCCCccCccChhhhh
Q psy7279 73 AAQCVICLAPFQPGEEVKEL-LCHHKFHSECLEPWL 107 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l-~C~H~Fh~~Ci~~wl 107 (195)
...|.+|...|..-..-..- .||++||..|.....
T Consensus 9 ~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~~ 44 (69)
T PF01363_consen 9 ASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQRI 44 (69)
T ss_dssp -SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EEE
T ss_pred CCcCcCcCCcCCCceeeEccCCCCCEECCchhCCEE
Confidence 56899999999743333333 499999999987654
No 138
>KOG3039|consensus
Probab=65.19 E-value=2.5 Score=34.79 Aligned_cols=33 Identities=15% Similarity=0.198 Sum_probs=28.6
Q ss_pred CCccccccccccCCCceEEeCCCCccCccChhhhhc
Q psy7279 73 AAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLR 108 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~ 108 (195)
=..|..||..+. .+++.+=||+|++.||...+.
T Consensus 43 FdcCsLtLqPc~---dPvit~~GylfdrEaILe~il 75 (303)
T KOG3039|consen 43 FDCCSLTLQPCR---DPVITPDGYLFDREAILEYIL 75 (303)
T ss_pred cceeeeeccccc---CCccCCCCeeeeHHHHHHHHH
Confidence 347999999998 888899999999999988763
No 139
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=64.87 E-value=5.6 Score=24.31 Aligned_cols=40 Identities=25% Similarity=0.585 Sum_probs=27.7
Q ss_pred cccccccccCCCceEEeCCCCccCccChhhhhccCccccccccccccCC
Q psy7279 76 CVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQHCPLCRNAVSVGS 124 (195)
Q Consensus 76 C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~~~ 124 (195)
|..|...+..+ ......-+..||..|+ .|-.|+..+....
T Consensus 1 C~~C~~~I~~~-~~~~~~~~~~~H~~Cf--------~C~~C~~~l~~~~ 40 (58)
T PF00412_consen 1 CARCGKPIYGT-EIVIKAMGKFWHPECF--------KCSKCGKPLNDGD 40 (58)
T ss_dssp BTTTSSBESSS-SEEEEETTEEEETTTS--------BETTTTCBTTTSS
T ss_pred CCCCCCCccCc-EEEEEeCCcEEEcccc--------ccCCCCCccCCCe
Confidence 67788877733 2332357788999987 6999988875543
No 140
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=63.65 E-value=3.3 Score=27.85 Aligned_cols=50 Identities=26% Similarity=0.406 Sum_probs=18.5
Q ss_pred CCccccccccccCCC--ceEEe--CCCCccCccChhhhhc-cCcccccccccccc
Q psy7279 73 AAQCVICLAPFQPGE--EVKEL--LCHHKFHSECLEPWLR-ERQHCPLCRNAVSV 122 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~--~~~~l--~C~H~Fh~~Ci~~wl~-~~~~CP~Cr~~~~~ 122 (195)
...|.||-+.+.... .+.+. .|+--.|+.|..-=.+ .++.||.|++.+.-
T Consensus 9 ~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~ykr 63 (80)
T PF14569_consen 9 GQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYKR 63 (80)
T ss_dssp S-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B---
T ss_pred CcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCccc
Confidence 558999999875322 22222 3777778888754333 36789999987753
No 141
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=62.87 E-value=2 Score=27.97 Aligned_cols=12 Identities=42% Similarity=1.090 Sum_probs=8.8
Q ss_pred ccCccChhhhhc
Q psy7279 97 KFHSECLEPWLR 108 (195)
Q Consensus 97 ~Fh~~Ci~~wl~ 108 (195)
-||+.|+.+|..
T Consensus 11 gFCRNCLskWy~ 22 (68)
T PF06844_consen 11 GFCRNCLSKWYR 22 (68)
T ss_dssp S--HHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 499999999985
No 142
>KOG3842|consensus
Probab=61.09 E-value=7.8 Score=33.12 Aligned_cols=51 Identities=18% Similarity=0.430 Sum_probs=32.1
Q ss_pred CCcccccccccc---------------CCCc-eEEeCCCCccCccChhhhhcc---------CccccccccccccC
Q psy7279 73 AAQCVICLAPFQ---------------PGEE-VKELLCHHKFHSECLEPWLRE---------RQHCPLCRNAVSVG 123 (195)
Q Consensus 73 ~~~C~IC~~~~~---------------~~~~-~~~l~C~H~Fh~~Ci~~wl~~---------~~~CP~Cr~~~~~~ 123 (195)
+..|++|+..-. .+-. ..--||||+--..-..-|.+. +..||+|-..+..+
T Consensus 341 ~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~ge 416 (429)
T KOG3842|consen 341 ERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLAGE 416 (429)
T ss_pred cCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccccchhhhhHhhcCcCCCccccccccCcchhhhhccC
Confidence 678999997532 1101 122369997666666667653 34699998877543
No 143
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the PLN02195 cellulose synthase A
Probab=57.29 E-value=14 Score=36.18 Aligned_cols=49 Identities=24% Similarity=0.451 Sum_probs=34.3
Q ss_pred CCccccccccccC---CCceEEeC-CCCccCccChhhhh-ccCccccccccccc
Q psy7279 73 AAQCVICLAPFQP---GEEVKELL-CHHKFHSECLEPWL-RERQHCPLCRNAVS 121 (195)
Q Consensus 73 ~~~C~IC~~~~~~---~~~~~~l~-C~H~Fh~~Ci~~wl-~~~~~CP~Cr~~~~ 121 (195)
...|.||-+.+.. |+.-+... |+--.|+.|-+-=- ..++.||.|++.+.
T Consensus 6 ~~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeyer~eg~q~CpqCkt~Yk 59 (977)
T PLN02195 6 APICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYEIKEGRKVCLRCGGPYD 59 (977)
T ss_pred CccceecccccCcCCCCCeEEEeccCCCccccchhhhhhhcCCccCCccCCccc
Confidence 4579999997653 33333333 88889999974322 23678999999887
No 145
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=57.24 E-value=4.4 Score=34.01 Aligned_cols=44 Identities=25% Similarity=0.375 Sum_probs=19.6
Q ss_pred CCccccccccccCCCceEEeC-----CCCccCccChhhhhccCccccccccc
Q psy7279 73 AAQCVICLAPFQPGEEVKELL-----CHHKFHSECLEPWLRERQHCPLCRNA 119 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l~-----C~H~Fh~~Ci~~wl~~~~~CP~Cr~~ 119 (195)
...|+||-..-.. ..... =.|.+|..|-..|--....||.|-..
T Consensus 172 ~g~CPvCGs~P~~---s~l~~~~~~G~R~L~Cs~C~t~W~~~R~~Cp~Cg~~ 220 (290)
T PF04216_consen 172 RGYCPVCGSPPVL---SVLRGGEREGKRYLHCSLCGTEWRFVRIKCPYCGNT 220 (290)
T ss_dssp -SS-TTT---EEE---EEEE------EEEEEETTT--EEE--TTS-TTT---
T ss_pred CCcCCCCCCcCce---EEEecCCCCccEEEEcCCCCCeeeecCCCCcCCCCC
Confidence 4689999875321 01111 13567778999998777889999553
No 146
>KOG3005|consensus
Probab=56.48 E-value=4.2 Score=33.84 Aligned_cols=48 Identities=23% Similarity=0.482 Sum_probs=32.6
Q ss_pred CccccccccccCCCceEEe-C---CCCccCccChhhhh-cc--------Cccccccccccc
Q psy7279 74 AQCVICLAPFQPGEEVKEL-L---CHHKFHSECLEPWL-RE--------RQHCPLCRNAVS 121 (195)
Q Consensus 74 ~~C~IC~~~~~~~~~~~~l-~---C~H~Fh~~Ci~~wl-~~--------~~~CP~Cr~~~~ 121 (195)
..|-+|...+...+..+.. + |.-.+|..|+..-+ .. ...||.|++.+.
T Consensus 183 ~~celc~~ei~e~~~~~a~c~~~~c~~~~h~~CLa~~~~~~e~g~~~p~eg~cp~C~~~~~ 243 (276)
T KOG3005|consen 183 VECELCEKEILETDWSRATCPNPDCDSLNHLTCLAEELLEVEPGQLIPLEGMCPKCEKFLS 243 (276)
T ss_pred hhhHHHHHHhccccceeccCCCCCCCchhhhhhhhHHHhccCCCceeccCCCCCchhceee
Confidence 5899999998433332222 2 88899999998733 21 235999988654
No 147
>PLN02400 cellulose synthase
Probab=56.14 E-value=16 Score=36.25 Aligned_cols=49 Identities=22% Similarity=0.418 Sum_probs=33.8
Q ss_pred CCccccccccccC---CCceEEe-CCCCccCccChhhhh-ccCccccccccccc
Q psy7279 73 AAQCVICLAPFQP---GEEVKEL-LCHHKFHSECLEPWL-RERQHCPLCRNAVS 121 (195)
Q Consensus 73 ~~~C~IC~~~~~~---~~~~~~l-~C~H~Fh~~Ci~~wl-~~~~~CP~Cr~~~~ 121 (195)
...|.||-+++.. |+.-+.. .|+--.|+.|-+-=- ..++.||.|++.+.
T Consensus 36 gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrYk 89 (1085)
T PLN02400 36 GQICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRYR 89 (1085)
T ss_pred CceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCccc
Confidence 5589999998753 3333333 388779999974211 23678999999886
No 148
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=55.82 E-value=7.4 Score=24.20 Aligned_cols=19 Identities=26% Similarity=0.635 Sum_probs=15.2
Q ss_pred ceEEe-CCCCccCccChhhh
Q psy7279 88 EVKEL-LCHHKFHSECLEPW 106 (195)
Q Consensus 88 ~~~~l-~C~H~Fh~~Ci~~w 106 (195)
..+.. .|++.||..|...|
T Consensus 39 ~~v~C~~C~~~fC~~C~~~~ 58 (64)
T smart00647 39 NRVTCPKCGFSFCFRCKVPW 58 (64)
T ss_pred CeeECCCCCCeECCCCCCcC
Confidence 44555 49999999999887
No 149
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=54.97 E-value=14 Score=36.56 Aligned_cols=49 Identities=22% Similarity=0.435 Sum_probs=34.6
Q ss_pred CCccccccccccC---CCceEEeC-CCCccCccChhhhh-ccCccccccccccc
Q psy7279 73 AAQCVICLAPFQP---GEEVKELL-CHHKFHSECLEPWL-RERQHCPLCRNAVS 121 (195)
Q Consensus 73 ~~~C~IC~~~~~~---~~~~~~l~-C~H~Fh~~Ci~~wl-~~~~~CP~Cr~~~~ 121 (195)
...|.||-+++.. |+.-+... |+--.|+.|.+-=. ..++.||.|++.+.
T Consensus 15 ~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~ 68 (1044)
T PLN02915 15 AKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYK 68 (1044)
T ss_pred cchhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 5689999998753 33333333 88889999984322 23678999999876
No 150
>KOG0824|consensus
Probab=53.07 E-value=5.3 Score=33.80 Aligned_cols=46 Identities=26% Similarity=0.605 Sum_probs=36.4
Q ss_pred CCccccccccccCCCceEEe-CCCCccCccChhhhhccCccccccccccc
Q psy7279 73 AAQCVICLAPFQPGEEVKEL-LCHHKFHSECLEPWLRERQHCPLCRNAVS 121 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l-~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 121 (195)
...|-||...+. -+... .|.|.|+..|...|......||.|+....
T Consensus 105 ~~~~~~~~g~l~---vpt~~qg~w~qf~~~~p~~~~~~~~~~~d~~~~~~ 151 (324)
T KOG0824|consen 105 HDICYICYGKLT---VPTRIQGCWHQFCYVCPKSNFAMGNDCPDCRGKIS 151 (324)
T ss_pred ccceeeeeeeEE---ecccccCceeeeeecCCchhhhhhhccchhhcCcC
Confidence 567999998776 22222 39999999999999999889999987654
No 151
>KOG3161|consensus
Probab=52.96 E-value=2.9 Score=38.86 Aligned_cols=43 Identities=28% Similarity=0.577 Sum_probs=31.0
Q ss_pred CCccccccccccC-CCceEEeCCCCccCccChhhhhccCcccccccc
Q psy7279 73 AAQCVICLAPFQP-GEEVKELLCHHKFHSECLEPWLRERQHCPLCRN 118 (195)
Q Consensus 73 ~~~C~IC~~~~~~-~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~ 118 (195)
-..|.||+..|.. .-.++.+-|||..|..|+.... +.+|| |+.
T Consensus 11 ~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~ly--n~scp-~~~ 54 (861)
T KOG3161|consen 11 LLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLY--NASCP-TKR 54 (861)
T ss_pred HhhchHHHHHHHHHhcCcccccccchHHHHHHHhHh--hccCC-CCc
Confidence 3479999877653 2356777899999999987643 46788 543
No 152
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=50.77 E-value=6.6 Score=19.96 Aligned_cols=8 Identities=38% Similarity=1.186 Sum_probs=3.6
Q ss_pred cccccccc
Q psy7279 111 QHCPLCRN 118 (195)
Q Consensus 111 ~~CP~Cr~ 118 (195)
+.||.|-+
T Consensus 14 ~fC~~CG~ 21 (23)
T PF13240_consen 14 KFCPNCGT 21 (23)
T ss_pred cchhhhCC
Confidence 34555533
No 153
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=50.60 E-value=9.5 Score=23.34 Aligned_cols=34 Identities=24% Similarity=0.458 Sum_probs=23.2
Q ss_pred CccccccccccCCCceE-EeCCCCccCccChhhhh
Q psy7279 74 AQCVICLAPFQPGEEVK-ELLCHHKFHSECLEPWL 107 (195)
Q Consensus 74 ~~C~IC~~~~~~~~~~~-~l~C~H~Fh~~Ci~~wl 107 (195)
..|.+|-..|..-..-. -..||++||..|.....
T Consensus 3 ~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~ 37 (57)
T cd00065 3 SSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRI 37 (57)
T ss_pred CcCcccCccccCCccccccCcCcCCcChHHcCCee
Confidence 46889988777432222 22499999999987654
No 154
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=49.80 E-value=19 Score=22.65 Aligned_cols=45 Identities=24% Similarity=0.656 Sum_probs=30.4
Q ss_pred ccccccccccCCCceEEeCCC--CccCccChhhhhccCcccccccccccc
Q psy7279 75 QCVICLAPFQPGEEVKELLCH--HKFHSECLEPWLRERQHCPLCRNAVSV 122 (195)
Q Consensus 75 ~C~IC~~~~~~~~~~~~l~C~--H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 122 (195)
.|-.|-.++..+.. ...-|. ..||..|....+ +..||.|-..+..
T Consensus 7 nCE~C~~dLp~~s~-~A~ICSfECTFC~~C~e~~l--~~~CPNCgGelv~ 53 (57)
T PF06906_consen 7 NCECCDKDLPPDSP-EAYICSFECTFCADCAETML--NGVCPNCGGELVR 53 (57)
T ss_pred CccccCCCCCCCCC-cceEEeEeCcccHHHHHHHh--cCcCcCCCCcccc
Confidence 57777777765431 122254 579999988766 5789999877643
No 155
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=49.75 E-value=8.2 Score=21.93 Aligned_cols=11 Identities=27% Similarity=0.703 Sum_probs=7.0
Q ss_pred ccccccccccC
Q psy7279 75 QCVICLAPFQP 85 (195)
Q Consensus 75 ~C~IC~~~~~~ 85 (195)
.|+-|...|..
T Consensus 4 ~CP~C~~~f~v 14 (37)
T PF13719_consen 4 TCPNCQTRFRV 14 (37)
T ss_pred ECCCCCceEEc
Confidence 47777766653
No 156
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=49.60 E-value=20 Score=30.61 Aligned_cols=44 Identities=18% Similarity=0.372 Sum_probs=29.4
Q ss_pred CCccccccccccCCCceEEe--C--CCCccCccChhhhhccCcccccccc
Q psy7279 73 AAQCVICLAPFQPGEEVKEL--L--CHHKFHSECLEPWLRERQHCPLCRN 118 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l--~--C~H~Fh~~Ci~~wl~~~~~CP~Cr~ 118 (195)
...|+||-..-.. .++.+ . =.+.+|..|-..|--....||.|-.
T Consensus 187 ~~~CPvCGs~P~~--s~v~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~ 234 (309)
T PRK03564 187 RQFCPVCGSMPVS--SVVQIGTTQGLRYLHCNLCESEWHVVRVKCSNCEQ 234 (309)
T ss_pred CCCCCCCCCcchh--heeeccCCCCceEEEcCCCCCcccccCccCCCCCC
Confidence 5689999886321 11111 1 1356777799999888889999965
No 157
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=48.21 E-value=6 Score=34.76 Aligned_cols=50 Identities=18% Similarity=0.387 Sum_probs=0.0
Q ss_pred CCcccccccccc-----CCC-----------ceEEeCCCCccCccChhhhhcc---------Ccccccccccccc
Q psy7279 73 AAQCVICLAPFQ-----PGE-----------EVKELLCHHKFHSECLEPWLRE---------RQHCPLCRNAVSV 122 (195)
Q Consensus 73 ~~~C~IC~~~~~-----~~~-----------~~~~l~C~H~Fh~~Ci~~wl~~---------~~~CP~Cr~~~~~ 122 (195)
...|++|+..-. .|. ...--||||+-=.....-|.+. +..||+|-..+..
T Consensus 328 ~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~PCGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~g 402 (416)
T PF04710_consen 328 SRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNPCGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPLDG 402 (416)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred cccCCCccccCCceeEeeccccceeecCCCCceeecccccccchhhhhhhhcCCCCCCcccccccCCcccCcccC
Confidence 568999996432 110 1122379998877788888753 3469999888753
No 158
>KOG0956|consensus
Probab=48.02 E-value=8.5 Score=36.22 Aligned_cols=49 Identities=22% Similarity=0.470 Sum_probs=32.6
Q ss_pred CCccccccccccCCCc--eEEe-----CCCCccCccChhhhh----------ccCccccccccccc
Q psy7279 73 AAQCVICLAPFQPGEE--VKEL-----LCHHKFHSECLEPWL----------RERQHCPLCRNAVS 121 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~--~~~l-----~C~H~Fh~~Ci~~wl----------~~~~~CP~Cr~~~~ 121 (195)
...|-||.|.-+..+. -..+ .|+..||..|...-- ..-++|-.|+..|.
T Consensus 117 nKtCYIC~E~GrpnkA~~GACMtCNKs~CkqaFHVTCAQ~~GLLCEE~gn~~dNVKYCGYCk~Hfs 182 (900)
T KOG0956|consen 117 NKTCYICNEEGRPNKAAKGACMTCNKSGCKQAFHVTCAQRAGLLCEEEGNISDNVKYCGYCKYHFS 182 (900)
T ss_pred cceeeeecccCCccccccccceecccccchhhhhhhHhhhhccceeccccccccceechhHHHHHH
Confidence 5689999998543221 1122 388899999976531 12457999988774
No 159
>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains.; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.
Probab=47.36 E-value=6.1 Score=21.59 Aligned_cols=25 Identities=28% Similarity=0.731 Sum_probs=12.3
Q ss_pred CCccCccChhhhhcc----Cccccccccc
Q psy7279 95 HHKFHSECLEPWLRE----RQHCPLCRNA 119 (195)
Q Consensus 95 ~H~Fh~~Ci~~wl~~----~~~CP~Cr~~ 119 (195)
.|.||..|-...... ...||.|...
T Consensus 2 ~~rfC~~CG~~t~~~~~g~~r~C~~Cg~~ 30 (32)
T PF09297_consen 2 NHRFCGRCGAPTKPAPGGWARRCPSCGHE 30 (32)
T ss_dssp TTSB-TTT--BEEE-SSSS-EEESSSS-E
T ss_pred CCcccCcCCccccCCCCcCEeECCCCcCE
Confidence 377888887654432 3468888653
No 160
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=46.10 E-value=8.5 Score=23.66 Aligned_cols=14 Identities=29% Similarity=0.814 Sum_probs=7.1
Q ss_pred CccccccccccccC
Q psy7279 110 RQHCPLCRNAVSVG 123 (195)
Q Consensus 110 ~~~CP~Cr~~~~~~ 123 (195)
+..||+|..+|..+
T Consensus 20 ~~~CPlC~r~l~~e 33 (54)
T PF04423_consen 20 KGCCPLCGRPLDEE 33 (54)
T ss_dssp SEE-TTT--EE-HH
T ss_pred CCcCCCCCCCCCHH
Confidence 33899999888643
No 161
>KOG1815|consensus
Probab=45.27 E-value=9 Score=34.22 Aligned_cols=37 Identities=22% Similarity=0.479 Sum_probs=25.8
Q ss_pred CCccccccccccCCCce---EEe--CCCCccCccChhhhhcc
Q psy7279 73 AAQCVICLAPFQPGEEV---KEL--LCHHKFHSECLEPWLRE 109 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~---~~l--~C~H~Fh~~Ci~~wl~~ 109 (195)
...|+.|.......... ... +|+|.||+.|+..|...
T Consensus 226 tk~CP~c~~~iek~~gc~~~~~~~~~c~~~FCw~Cl~~~~~h 267 (444)
T KOG1815|consen 226 TKECPKCKVPIEKDGGCNHMTCKSASCKHEFCWVCLASLSDH 267 (444)
T ss_pred CccCCCcccchhccCCccccccccCCcCCeeceeeecccccc
Confidence 33599999887643311 222 49999999998888754
No 162
>COG4647 AcxC Acetone carboxylase, gamma subunit [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=44.19 E-value=14 Score=27.41 Aligned_cols=23 Identities=26% Similarity=0.439 Sum_probs=17.0
Q ss_pred cccccccccCCCceEEeCCCCccCcc
Q psy7279 76 CVICLAPFQPGEEVKELLCHHKFHSE 101 (195)
Q Consensus 76 C~IC~~~~~~~~~~~~l~C~H~Fh~~ 101 (195)
=-||...-. .+....|||.||..
T Consensus 60 lfi~qs~~~---rv~rcecghsf~d~ 82 (165)
T COG4647 60 LFICQSAQK---RVIRCECGHSFGDY 82 (165)
T ss_pred EEEEecccc---cEEEEeccccccCh
Confidence 457777544 67888899999864
No 163
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=41.83 E-value=17 Score=26.21 Aligned_cols=46 Identities=20% Similarity=0.447 Sum_probs=28.8
Q ss_pred CCccccccccccC--CCceEEeCCCCccCccChhhhhcc--Cccccccccc
Q psy7279 73 AAQCVICLAPFQP--GEEVKELLCHHKFHSECLEPWLRE--RQHCPLCRNA 119 (195)
Q Consensus 73 ~~~C~IC~~~~~~--~~~~~~l~C~H~Fh~~Ci~~wl~~--~~~CP~Cr~~ 119 (195)
+..|++|...|.. +.......|+|.+|..|-.. ... .-.|-+|...
T Consensus 54 ~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~-~~~~~~WlC~vC~k~ 103 (118)
T PF02318_consen 54 ERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVY-SKKEPIWLCKVCQKQ 103 (118)
T ss_dssp CSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEEE-TSSSCCEEEHHHHHH
T ss_pred CcchhhhCCcccccCCCCCcCCcCCccccCccCCc-CCCCCCEEChhhHHH
Confidence 6689999987643 22334445999999999765 211 1258888653
No 164
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=41.59 E-value=18 Score=29.70 Aligned_cols=25 Identities=28% Similarity=0.477 Sum_probs=18.4
Q ss_pred CccccccccccCCCceEEeCCCCcc
Q psy7279 74 AQCVICLAPFQPGEEVKELLCHHKF 98 (195)
Q Consensus 74 ~~C~IC~~~~~~~~~~~~l~C~H~F 98 (195)
..|++|...+...+.....+.+|.|
T Consensus 3 ~~CP~C~~~l~~~~~~~~C~~~h~f 27 (272)
T PRK11088 3 YQCPLCHQPLTLEENSWICPQNHQF 27 (272)
T ss_pred ccCCCCCcchhcCCCEEEcCCCCCC
Confidence 4699999999765555555667887
No 165
>PF01485 IBR: IBR domain; InterPro: IPR002867 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a cysteine-rich (C6HC) zinc finger domain that is present in Triad1, and which is conserved in other proteins encoded by various eukaryotes. The C6HC consensus pattern is: C-x(4)-C-x(14-30)-C-x(1-4)-C-x(4)-C-x(2)-C-x(4)-H-x(4)-C The C6HC zinc finger motif is the fourth family member of the zinc-binding RING, LIM, and LAP/PHD fingers. Strikingly, in most of the proteins the C6HC domain is flanked by two RING finger structures IPR001841 from INTERPRO. The novel C6HC motif has been called DRIL (double RING finger linked). The strong conservation of the larger tripartite TRIAD (twoRING fingers and DRIL) structure indicates that the three subdomains are functionally linked and identifies a novel class of proteins []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CT7_A 1WD2_A 2JMO_A 1WIM_A.
Probab=40.68 E-value=11 Score=23.43 Aligned_cols=32 Identities=25% Similarity=0.572 Sum_probs=17.7
Q ss_pred cccc--ccccccCCC--ce--EEeC-CCCccCccChhhh
Q psy7279 75 QCVI--CLAPFQPGE--EV--KELL-CHHKFHSECLEPW 106 (195)
Q Consensus 75 ~C~I--C~~~~~~~~--~~--~~l~-C~H~Fh~~Ci~~w 106 (195)
.|+- |-..+...+ .. +.-+ |++.||..|...|
T Consensus 20 ~Cp~~~C~~~~~~~~~~~~~~~~C~~C~~~fC~~C~~~~ 58 (64)
T PF01485_consen 20 WCPNPDCEYIIEKDDGCNSPIVTCPSCGTEFCFKCGEPW 58 (64)
T ss_dssp --TTSST---ECS-SSTTS--CCTTSCCSEECSSSTSES
T ss_pred CCCCCCCcccEEecCCCCCCeeECCCCCCcCccccCccc
Confidence 5655 666554322 22 3445 9999999999887
No 166
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=38.52 E-value=26 Score=24.93 Aligned_cols=27 Identities=33% Similarity=0.687 Sum_probs=20.0
Q ss_pred CCccCccChhhhhcc---------Cccccccccccc
Q psy7279 95 HHKFHSECLEPWLRE---------RQHCPLCRNAVS 121 (195)
Q Consensus 95 ~H~Fh~~Ci~~wl~~---------~~~CP~Cr~~~~ 121 (195)
.-.||..||..+... .-.||.||..-.
T Consensus 37 ~~~fC~~CL~~ryge~~~ev~~~~~W~CP~CrgiCn 72 (105)
T PF10497_consen 37 RGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRGICN 72 (105)
T ss_pred cceehHhHHHHHHhhhHHHHhcCCceECCCCCCeeC
Confidence 678999999887642 236999988543
No 167
>KOG2231|consensus
Probab=38.37 E-value=24 Score=33.31 Aligned_cols=50 Identities=26% Similarity=0.515 Sum_probs=35.7
Q ss_pred ccccccccccCCCceEEeCCCC-ccCccChhhhhc--c----CccccccccccccCCCCC
Q psy7279 75 QCVICLAPFQPGEEVKELLCHH-KFHSECLEPWLR--E----RQHCPLCRNAVSVGSISS 127 (195)
Q Consensus 75 ~C~IC~~~~~~~~~~~~l~C~H-~Fh~~Ci~~wl~--~----~~~CP~Cr~~~~~~~~~~ 127 (195)
.|+||-.... -+..-.|+| ..|..|..+... . ...||+||..+.......
T Consensus 2 ~c~ic~~s~~---~~~~~s~~h~~v~~~~~~R~~~~~~~~~~~~~~~vcr~~~~~~s~~~ 58 (669)
T KOG2231|consen 2 SCAICAFSPD---FVGRGSCGHNEVCATCVVRLRFELNNRKCSNECPVCRREVETKSNGD 58 (669)
T ss_pred CcceeecCcc---ccccccccccccchhhhhhhhhhcccccccccCcccccceeeecccc
Confidence 5999988765 455556999 899999877642 2 446899999876554433
No 168
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=38.37 E-value=29 Score=29.57 Aligned_cols=46 Identities=22% Similarity=0.387 Sum_probs=28.9
Q ss_pred CCccccccccccCCCceEEe--C--CCCccCccChhhhhccCccccccccc
Q psy7279 73 AAQCVICLAPFQPGEEVKEL--L--CHHKFHSECLEPWLRERQHCPLCRNA 119 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l--~--C~H~Fh~~Ci~~wl~~~~~CP~Cr~~ 119 (195)
...|+||-..-... .+... . =.+.+|..|-..|--....||.|-..
T Consensus 184 ~~~CPvCGs~P~~s-~~~~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~~ 233 (305)
T TIGR01562 184 RTLCPACGSPPVAS-MVRQGGKETGLRYLSCSLCATEWHYVRVKCSHCEES 233 (305)
T ss_pred CCcCCCCCChhhhh-hhcccCCCCCceEEEcCCCCCcccccCccCCCCCCC
Confidence 45899998853210 00000 1 12456677999998888899999653
No 169
>KOG2071|consensus
Probab=38.28 E-value=25 Score=32.48 Aligned_cols=36 Identities=31% Similarity=0.529 Sum_probs=24.0
Q ss_pred CCCCccccccccccC---C--C-----ceEEeCCCCccCccChhhh
Q psy7279 71 APAAQCVICLAPFQP---G--E-----EVKELLCHHKFHSECLEPW 106 (195)
Q Consensus 71 ~~~~~C~IC~~~~~~---~--~-----~~~~l~C~H~Fh~~Ci~~w 106 (195)
.....|+||.|.|.. . + ..+.+.=|-+||..|+..-
T Consensus 511 e~~~~C~IC~EkFe~v~d~e~~~Wm~kdaV~le~G~ifH~~Cl~e~ 556 (579)
T KOG2071|consen 511 ERQASCPICQEKFEVVFDQEEDLWMYKDAVYLEFGRIFHSKCLSEK 556 (579)
T ss_pred ccccCCcccccccceeecchhhheeecceeeeccCceeeccccchH
Confidence 336789999999871 0 0 2233335889999998653
No 170
>COG2816 NPY1 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]
Probab=38.09 E-value=15 Score=30.87 Aligned_cols=29 Identities=21% Similarity=0.417 Sum_probs=20.9
Q ss_pred CCCccCccChhhhhcc----Ccccccccccccc
Q psy7279 94 CHHKFHSECLEPWLRE----RQHCPLCRNAVSV 122 (195)
Q Consensus 94 C~H~Fh~~Ci~~wl~~----~~~CP~Cr~~~~~ 122 (195)
=.|.||..|..+.... ...||.|+...-+
T Consensus 109 ~~~RFCg~CG~~~~~~~~g~~~~C~~cg~~~fP 141 (279)
T COG2816 109 RSHRFCGRCGTKTYPREGGWARVCPKCGHEHFP 141 (279)
T ss_pred hhCcCCCCCCCcCccccCceeeeCCCCCCccCC
Confidence 5688999998876543 4469999876543
No 171
>KOG2041|consensus
Probab=37.42 E-value=37 Score=32.58 Aligned_cols=44 Identities=30% Similarity=0.659 Sum_probs=27.2
Q ss_pred CCccccccccccC----C----CceEEe-C-CCCccCccChhhhhccCcccccccccc
Q psy7279 73 AAQCVICLAPFQP----G----EEVKEL-L-CHHKFHSECLEPWLRERQHCPLCRNAV 120 (195)
Q Consensus 73 ~~~C~IC~~~~~~----~----~~~~~l-~-C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~ 120 (195)
+..|+-|...|.. | +....+ + |+|.-|..=|.+ ...||+|...+
T Consensus 1131 ~~~c~ec~~kfP~CiasG~pIt~~~fWlC~~CkH~a~~~EIs~----y~~CPLCHs~~ 1184 (1189)
T KOG2041|consen 1131 DLQCSECQTKFPVCIASGRPITDNIFWLCPRCKHRAHQHEISK----YNCCPLCHSME 1184 (1189)
T ss_pred CCCChhhcCcCceeeccCCccccceEEEccccccccccccccc----cccCccccChh
Confidence 5678777776641 1 122222 3 888777665543 56799997765
No 172
>KOG1729|consensus
Probab=37.39 E-value=8.3 Score=32.55 Aligned_cols=36 Identities=25% Similarity=0.575 Sum_probs=26.5
Q ss_pred ccccccccccCCCceEEeCCCCccCccChhhhhccC
Q psy7279 75 QCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRER 110 (195)
Q Consensus 75 ~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~ 110 (195)
.|.+|++.|..+.......|..+||..|+..|+...
T Consensus 216 vC~~CF~el~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (288)
T KOG1729|consen 216 VCDICFEELEKGARGDREDSLPVFHGKCYPNWLTTG 251 (288)
T ss_pred ecHHHHHHHhcccccchhhccccccccccccccccc
Confidence 788999988754455555566688888988887653
No 173
>PF05715 zf-piccolo: Piccolo Zn-finger; InterPro: IPR008899 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This (predicted) zinc finger is found in the bassoon and piccolo proteins, both of which are components of the presynaptic cytoskeletal matrix (PCM) assembled at the active zone of neurotransmitter release, where Piccolo plays a role in the trafficking of synaptic vesicles (SVs) [, , ]. The Piccolo zinc fingers were found to interact with the dual prenylated rab3A and VAMP2/Synaptobrevin II receptor PRA1. There are eight conserved cysteines in Piccolo-type zinc fingers, suggesting that they coordinates two zinc ligands. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding, 0045202 synapse
Probab=36.10 E-value=25 Score=22.42 Aligned_cols=13 Identities=38% Similarity=1.165 Sum_probs=9.0
Q ss_pred Ccccccccccccc
Q psy7279 110 RQHCPLCRNAVSV 122 (195)
Q Consensus 110 ~~~CP~Cr~~~~~ 122 (195)
+..||+|+..+..
T Consensus 2 k~~CPlCkt~~n~ 14 (61)
T PF05715_consen 2 KSLCPLCKTTLNV 14 (61)
T ss_pred CccCCcccchhhc
Confidence 4568888887643
No 174
>COG3492 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.77 E-value=8 Score=26.83 Aligned_cols=13 Identities=46% Similarity=1.091 Sum_probs=11.1
Q ss_pred ccCccChhhhhcc
Q psy7279 97 KFHSECLEPWLRE 109 (195)
Q Consensus 97 ~Fh~~Ci~~wl~~ 109 (195)
-||+.|+..|...
T Consensus 42 gFCRNCLs~Wy~e 54 (104)
T COG3492 42 GFCRNCLSNWYRE 54 (104)
T ss_pred HHHHHHHHHHHHH
Confidence 5999999999863
No 175
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=35.73 E-value=17 Score=20.50 Aligned_cols=11 Identities=27% Similarity=0.691 Sum_probs=6.6
Q ss_pred ccccccccccC
Q psy7279 75 QCVICLAPFQP 85 (195)
Q Consensus 75 ~C~IC~~~~~~ 85 (195)
.|+=|...|..
T Consensus 4 ~Cp~C~~~y~i 14 (36)
T PF13717_consen 4 TCPNCQAKYEI 14 (36)
T ss_pred ECCCCCCEEeC
Confidence 46666666653
No 176
>KOG4185|consensus
Probab=35.29 E-value=5.4 Score=33.32 Aligned_cols=47 Identities=23% Similarity=0.484 Sum_probs=36.3
Q ss_pred CCccccccccccCC---CceEEeC--------CCCccCccChhhhhcc-Cccccccccc
Q psy7279 73 AAQCVICLAPFQPG---EEVKELL--------CHHKFHSECLEPWLRE-RQHCPLCRNA 119 (195)
Q Consensus 73 ~~~C~IC~~~~~~~---~~~~~l~--------C~H~Fh~~Ci~~wl~~-~~~CP~Cr~~ 119 (195)
+..|.||...+... ..+..+. |+|..|..|+..-+.. ...||.|+..
T Consensus 207 ~~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~~~~cp~~~~~ 265 (296)
T KOG4185|consen 207 EKLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQAGIKCPFCTWS 265 (296)
T ss_pred HHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHhhhcCCcccce
Confidence 45799999988732 2455666 9999999999987654 4589999874
No 177
>KOG2113|consensus
Probab=34.61 E-value=26 Score=30.03 Aligned_cols=42 Identities=2% Similarity=-0.182 Sum_probs=31.8
Q ss_pred CCccccccccccCCCceEEeCCCC-ccCccChhhhhccCccccccccc
Q psy7279 73 AAQCVICLAPFQPGEEVKELLCHH-KFHSECLEPWLRERQHCPLCRNA 119 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l~C~H-~Fh~~Ci~~wl~~~~~CP~Cr~~ 119 (195)
...|-.|-+.+. .....+|+| .||..|.. +....+||+|...
T Consensus 343 ~~~~~~~~~~~~---st~~~~~~~n~~~~~~a~--~s~~~~~~~c~~~ 385 (394)
T KOG2113|consen 343 SLKGTSAGFGLL---STIWSGGNMNLSPGSLAS--ASASPTSSTCDHN 385 (394)
T ss_pred hcccccccCcee---eeEeecCCcccChhhhhh--cccCCcccccccc
Confidence 557888887765 566778998 48888876 5567899999654
No 178
>COG4847 Uncharacterized protein conserved in archaea [Function unknown]
Probab=34.48 E-value=18 Score=25.33 Aligned_cols=33 Identities=21% Similarity=0.394 Sum_probs=26.3
Q ss_pred CCccccccccccCCCceEEeCCCCccCccChhhh
Q psy7279 73 AAQCVICLAPFQPGEEVKELLCHHKFHSECLEPW 106 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~w 106 (195)
.-.|.||-+.+..|+...-++ +-..|+.|+..=
T Consensus 6 ewkC~VCg~~iieGqkFTF~~-kGsVH~eCl~~s 38 (103)
T COG4847 6 EWKCYVCGGTIIEGQKFTFTK-KGSVHYECLAES 38 (103)
T ss_pred eeeEeeeCCEeeeccEEEEee-CCcchHHHHHHH
Confidence 457999999999887776666 667899998763
No 179
>PF12660 zf-TFIIIC: Putative zinc-finger of transcription factor IIIC complex; InterPro: IPR024764 This zinc-finger domain is at the very C terminus of a number of different TFIIIC subunit proteins. This domain might be involved in protein-DNA and/or protein-protein interactions [].; PDB: 2J04_C.
Probab=33.99 E-value=19 Score=25.22 Aligned_cols=51 Identities=22% Similarity=0.439 Sum_probs=15.8
Q ss_pred CCccccccccccCCC-ceEEeCCCCccCccChhhhhcc----CccccccccccccCC
Q psy7279 73 AAQCVICLAPFQPGE-EVKELLCHHKFHSECLEPWLRE----RQHCPLCRNAVSVGS 124 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~-~~~~l~C~H~Fh~~Ci~~wl~~----~~~CP~Cr~~~~~~~ 124 (195)
.+.|.||.+.+...+ .....+=||.| ..|....+.- -+.|++|...+-...
T Consensus 14 ~E~C~~C~~~i~~~~~~~~~C~~GH~w-~RC~lT~l~i~~~~~r~C~~C~~~~l~~~ 69 (99)
T PF12660_consen 14 FEKCPICGAPIPFDDLDEAQCENGHVW-PRCALTFLPIQTPGVRVCPVCGRRALDPE 69 (99)
T ss_dssp ---------------SSEEE-TTS-EE-EB-SSS-SBS-SS-EEE-TTT--EEE-GG
T ss_pred cccccccccccccCCcCEeECCCCCEE-eeeeeeeeeeccCCeeEcCCCCCEEecCc
Confidence 368999999876433 23333457987 4576655532 257999987765433
No 180
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=33.94 E-value=29 Score=19.01 Aligned_cols=9 Identities=33% Similarity=0.944 Sum_probs=6.5
Q ss_pred Ccccccccc
Q psy7279 110 RQHCPLCRN 118 (195)
Q Consensus 110 ~~~CP~Cr~ 118 (195)
...||+|..
T Consensus 17 ~~~CP~Cg~ 25 (33)
T cd00350 17 PWVCPVCGA 25 (33)
T ss_pred CCcCcCCCC
Confidence 347999965
No 181
>KOG4218|consensus
Probab=32.59 E-value=30 Score=30.03 Aligned_cols=50 Identities=28% Similarity=0.521 Sum_probs=29.3
Q ss_pred CCCCCccccccccccCCCceEEeC---CCCcc--------CccChhhhh-----ccCcccccccccc
Q psy7279 70 EAPAAQCVICLAPFQPGEEVKELL---CHHKF--------HSECLEPWL-----RERQHCPLCRNAV 120 (195)
Q Consensus 70 ~~~~~~C~IC~~~~~~~~~~~~l~---C~H~F--------h~~Ci~~wl-----~~~~~CP~Cr~~~ 120 (195)
+..++.|++|-+... |-....|. |+-.| |..|+..-- ...+.||.||..-
T Consensus 12 edl~ElCPVCGDkVS-GYHYGLLTCESCKGFFKRTVQNnK~YtC~e~qnC~iDkTqRKRCP~CRFQK 77 (475)
T KOG4218|consen 12 EDLGELCPVCGDKVS-GYHYGLLTCESCKGFFKRTVQNNKQYTCSEEQNCHIDKTQRKRCPSCRFQK 77 (475)
T ss_pred cccccccccccCccc-cceeeeeehhhhhhHHHHHhhcCcceecccccccccchHhhccCCchhHHH
Confidence 344778999999765 33444444 55444 334554321 1145699999853
No 182
>KOG3113|consensus
Probab=32.12 E-value=26 Score=29.05 Aligned_cols=55 Identities=15% Similarity=0.172 Sum_probs=35.3
Q ss_pred CCccccccccccCCC-ceEEeCCCCccCccChhhhhccCccccccccccccCCCCCCC
Q psy7279 73 AAQCVICLAPFQPGE-EVKELLCHHKFHSECLEPWLRERQHCPLCRNAVSVGSISSEN 129 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~-~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~~~~~~~~ 129 (195)
...|+|=--++...- -....+|||+|-..-+.+. ...+|++|.+.+..++...-+
T Consensus 111 ~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKei--kas~C~~C~a~y~~~dvIvlN 166 (293)
T KOG3113|consen 111 RFICPVTGLEMNGKYRFCALRCCGCVFSERALKEI--KASVCHVCGAAYQEDDVIVLN 166 (293)
T ss_pred eeecccccceecceEEEEEEeccceeccHHHHHHh--hhccccccCCcccccCeEeeC
Confidence 447888766665322 2344579999976554432 256899999988776654443
No 183
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=32.00 E-value=17 Score=21.18 Aligned_cols=26 Identities=23% Similarity=0.396 Sum_probs=14.9
Q ss_pred eCCCCccCccChhhhhccCcccccccc
Q psy7279 92 LLCHHKFHSECLEPWLRERQHCPLCRN 118 (195)
Q Consensus 92 l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~ 118 (195)
..|+|.|-..--..= .....||.|..
T Consensus 9 ~~Cg~~fe~~~~~~~-~~~~~CP~Cg~ 34 (42)
T PF09723_consen 9 EECGHEFEVLQSISE-DDPVPCPECGS 34 (42)
T ss_pred CCCCCEEEEEEEcCC-CCCCcCCCCCC
Confidence 358887765321111 23457999977
No 184
>PF06750 DiS_P_DiS: Bacterial Peptidase A24 N-terminal domain; InterPro: IPR010627 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This domain is found at the N terminus of bacterial aspartic peptidases belonging to MEROPS peptidase family A24 (clan AD), subfamily A24A (type IV prepilin peptidase, IPR000045 from INTERPRO). It's function has not been specifically determined; however some of the family have been characterised as bifunctional [], and this domain may contain the N-methylation activity. The domain consists of an intracellular region between a pair of transmembrane domains. This intracellular region contains an invariant proline and four conserved cysteines. These Cys residues are arranged in a two-pair motif, with the Cys residues of a pair separated (usually) by 2 aa and with each pair separated by 21 largely hydrophilic residues (C-X-X-C...X21...C-X-X-C); they have been shown to be essential to the overall function of the enzyme [, ]. The bifunctional enzyme prepilin peptidase (PilD) from Pseudomonas aeruginosa is a key determinant in both type-IV pilus biogenesis and extracellular protein secretion, in its roles as a leader peptidase and methyl transferase (MTase). It is responsible for endopeptidic cleavage of the unique leader peptides that characterise type-IV pilin precursors, as well as proteins with homologous leader sequences that are essential components of the general secretion pathway found in a variety of Gram-negative pathogens. Following removal of the leader peptides, the same enzyme is responsible for the second posttranslational modification that characterises the type-IV pilins and their homologues, namely N-methylation of the newly exposed N-terminal amino acid residue [].
Probab=30.23 E-value=39 Score=23.34 Aligned_cols=20 Identities=20% Similarity=0.511 Sum_probs=16.3
Q ss_pred hhhhhccCcccccccccccc
Q psy7279 103 LEPWLRERQHCPLCRNAVSV 122 (195)
Q Consensus 103 i~~wl~~~~~CP~Cr~~~~~ 122 (195)
|..|+..+..|..|+++++.
T Consensus 51 i~S~l~lrGrCr~C~~~I~~ 70 (92)
T PF06750_consen 51 ILSYLLLRGRCRYCGAPIPP 70 (92)
T ss_pred HHHHHHhCCCCcccCCCCCh
Confidence 45788888899999998864
No 185
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=29.21 E-value=23 Score=23.80 Aligned_cols=31 Identities=23% Similarity=0.428 Sum_probs=21.0
Q ss_pred CCccccccccccCCCceEEe--CCCCccCccChhh
Q psy7279 73 AAQCVICLAPFQPGEEVKEL--LCHHKFHSECLEP 105 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l--~C~H~Fh~~Ci~~ 105 (195)
...|.+|..... ..+.-. .|...||..|...
T Consensus 36 ~~~C~~C~~~~G--a~i~C~~~~C~~~fH~~CA~~ 68 (90)
T PF13771_consen 36 KLKCSICKKKGG--ACIGCSHPGCSRSFHVPCARK 68 (90)
T ss_pred CCCCcCCCCCCC--eEEEEeCCCCCcEEChHHHcc
Confidence 568999997632 222222 3889999999754
No 186
>PF14311 DUF4379: Domain of unknown function (DUF4379)
Probab=29.17 E-value=28 Score=21.37 Aligned_cols=22 Identities=27% Similarity=0.859 Sum_probs=11.1
Q ss_pred CCCccCccChhhhhccCcccccc
Q psy7279 94 CHHKFHSECLEPWLRERQHCPLC 116 (195)
Q Consensus 94 C~H~Fh~~Ci~~wl~~~~~CP~C 116 (195)
|+|.|-.. +.........||.|
T Consensus 34 Cgh~w~~~-v~~R~~~~~~CP~C 55 (55)
T PF14311_consen 34 CGHEWKAS-VNDRTRRGKGCPYC 55 (55)
T ss_pred CCCeeEcc-HhhhccCCCCCCCC
Confidence 55554322 22222345679887
No 187
>KOG1973|consensus
Probab=28.49 E-value=18 Score=30.26 Aligned_cols=27 Identities=26% Similarity=0.631 Sum_probs=19.0
Q ss_pred CC-CccCccChhhhh--ccCcccccccccc
Q psy7279 94 CH-HKFHSECLEPWL--RERQHCPLCRNAV 120 (195)
Q Consensus 94 C~-H~Fh~~Ci~~wl--~~~~~CP~Cr~~~ 120 (195)
|. -.||+.|+.--. ..+-.||.|+...
T Consensus 240 C~~eWFH~~CVGL~~~PkgkWyC~~C~~~~ 269 (274)
T KOG1973|consen 240 CPIEWFHFTCVGLKTKPKGKWYCPRCKAEN 269 (274)
T ss_pred CCcceEEEeccccccCCCCcccchhhhhhh
Confidence 88 899999985321 1234799998754
No 188
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.05 E-value=40 Score=22.42 Aligned_cols=44 Identities=25% Similarity=0.651 Sum_probs=27.4
Q ss_pred cccccccccCCCceEEeCCC--CccCccChhhhhccCcccccccccccc
Q psy7279 76 CVICLAPFQPGEEVKELLCH--HKFHSECLEPWLRERQHCPLCRNAVSV 122 (195)
Q Consensus 76 C~IC~~~~~~~~~~~~l~C~--H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 122 (195)
|--|-.++..+.. ..+-|. |.||..|...-+ +..||.|-..+..
T Consensus 8 CECCDrDLpp~s~-dA~ICtfEcTFCadCae~~l--~g~CPnCGGelv~ 53 (84)
T COG3813 8 CECCDRDLPPDST-DARICTFECTFCADCAENRL--HGLCPNCGGELVA 53 (84)
T ss_pred CcccCCCCCCCCC-ceeEEEEeeehhHhHHHHhh--cCcCCCCCchhhc
Confidence 5556556554322 222344 789999987533 5689999777644
No 189
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=28.01 E-value=45 Score=25.32 Aligned_cols=28 Identities=43% Similarity=0.713 Sum_probs=19.6
Q ss_pred cCccChhhhhcc----CccccccccccccCCC
Q psy7279 98 FHSECLEPWLRE----RQHCPLCRNAVSVGSI 125 (195)
Q Consensus 98 Fh~~Ci~~wl~~----~~~CP~Cr~~~~~~~~ 125 (195)
||..|+..=|.. .-.||.|...-.....
T Consensus 2 ~H~~CL~Ppl~~~P~g~W~Cp~C~~~~~~~~~ 33 (148)
T cd04718 2 FHLCCLRPPLKEVPEGDWICPFCEVEKSGQSA 33 (148)
T ss_pred cccccCCCCCCCCCCCCcCCCCCcCCCCCCcc
Confidence 788898877754 2369999876554444
No 190
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=27.06 E-value=36 Score=23.84 Aligned_cols=31 Identities=26% Similarity=0.491 Sum_probs=21.1
Q ss_pred CCccccccccccCCCceEEeC--CCCccCccChhh
Q psy7279 73 AAQCVICLAPFQPGEEVKELL--CHHKFHSECLEP 105 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l~--C~H~Fh~~Ci~~ 105 (195)
...|.||..... ..+.-.. |...||..|...
T Consensus 55 ~~~C~iC~~~~G--~~i~C~~~~C~~~fH~~CA~~ 87 (110)
T PF13832_consen 55 KLKCSICGKSGG--ACIKCSHPGCSTAFHPTCARK 87 (110)
T ss_pred CCcCcCCCCCCc--eeEEcCCCCCCcCCCHHHHHH
Confidence 568999999732 2222222 888999999865
No 191
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=26.48 E-value=19 Score=19.19 Aligned_cols=29 Identities=28% Similarity=0.580 Sum_probs=8.2
Q ss_pred ccccccccccCCCceEEeCCCCccCccCh
Q psy7279 75 QCVICLAPFQPGEEVKELLCHHKFHSECL 103 (195)
Q Consensus 75 ~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci 103 (195)
.|.+|.+....+-...-..|.-.+|..|+
T Consensus 2 ~C~~C~~~~~~~~~Y~C~~Cdf~lH~~Ca 30 (30)
T PF07649_consen 2 RCDACGKPIDGGWFYRCSECDFDLHEECA 30 (30)
T ss_dssp --TTTS----S--EEE-TTT-----HHHH
T ss_pred cCCcCCCcCCCCceEECccCCCccChhcC
Confidence 47778777653112233347777776663
No 192
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=26.22 E-value=66 Score=18.45 Aligned_cols=17 Identities=18% Similarity=0.303 Sum_probs=13.0
Q ss_pred HHHHHHHHHHhCCcccc
Q psy7279 157 AEAFAEALVEAFPQVFP 173 (195)
Q Consensus 157 ~~~~~~~~~~~~p~~~~ 173 (195)
.++..+.+++|||.+-.
T Consensus 2 ~~~~v~~L~~mFP~l~~ 18 (43)
T smart00546 2 NDEALHDLKDMFPNLDE 18 (43)
T ss_pred hHHHHHHHHHHCCCCCH
Confidence 35678889999998753
No 193
>PLN02248 cellulose synthase-like protein
Probab=25.86 E-value=39 Score=33.78 Aligned_cols=37 Identities=19% Similarity=0.451 Sum_probs=29.3
Q ss_pred eEEeCCCCccCccChhhhhccCccccccccccccCCC
Q psy7279 89 VKELLCHHKFHSECLEPWLRERQHCPLCRNAVSVGSI 125 (195)
Q Consensus 89 ~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~~~~ 125 (195)
..-..|+...|++|-..-++....||-|+.++...+.
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (1135)
T PLN02248 145 LLPCECGFKICRDCYIDAVKSGGICPGCKEPYKVTDL 181 (1135)
T ss_pred CCcccccchhHHhHhhhhhhcCCCCCCCccccccccc
Confidence 3334488999999999988888899999998855443
No 194
>KOG1356|consensus
Probab=25.38 E-value=30 Score=33.41 Aligned_cols=49 Identities=14% Similarity=0.325 Sum_probs=33.4
Q ss_pred CCccccccccccCCCceEEeCCCCccCccChhhhh-cc-----Ccccccccccccc
Q psy7279 73 AAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWL-RE-----RQHCPLCRNAVSV 122 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl-~~-----~~~CP~Cr~~~~~ 122 (195)
...|-.|...... -..+.-.|++.+|..|+..|. .. ...|++|+.....
T Consensus 229 ~~mC~~C~~tlfn-~hw~C~~C~~~~Cl~C~r~~~p~~~~~e~a~k~~~~~~~C~~ 283 (889)
T KOG1356|consen 229 REMCDRCETTLFN-IHWRCPRCGFGVCLDCYRKWYPRLSKEEVAEKCEFSWLKCNK 283 (889)
T ss_pred chhhhhhcccccc-eeEEccccCCeeeecchhhccccchHhHhhhhhhHHHHhcCC
Confidence 6689999886551 023333499999999999995 11 2358888776543
No 195
>PF06937 EURL: EURL protein; InterPro: IPR009704 This family consists of several animal EURL proteins. EURL is preferentially expressed in chick retinal precursor cells as well as in the anterior epithelial cells of the lens at early stages of development. EURL transcripts are found primarily in the peripheral dorsal retina, i.e., the most undifferentiated part of the dorsal retina. EURL transcripts are also detected in the lens at stage 18 and remain abundant in the proliferating epithelial cells of the lens until at least day 11. The distribution pattern of EURL in the developing retina and lens suggest a role before the events leading to cell determination and differentiation [].
Probab=24.97 E-value=33 Score=28.66 Aligned_cols=44 Identities=27% Similarity=0.525 Sum_probs=26.7
Q ss_pred CCccccccccccCCCceEEeC-CC-CccCccChhhhh-ccCcccccc
Q psy7279 73 AAQCVICLAPFQPGEEVKELL-CH-HKFHSECLEPWL-RERQHCPLC 116 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l~-C~-H~Fh~~Ci~~wl-~~~~~CP~C 116 (195)
-..|.||++....|-.-..|. -+ =.-|++|+.+|- -.+..||.-
T Consensus 30 LsfChiCfEl~iegvpks~llHtkSlRGHrdCFEK~HlIanQ~~prs 76 (285)
T PF06937_consen 30 LSFCHICFELSIEGVPKSNLLHTKSLRGHRDCFEKYHLIANQDCPRS 76 (285)
T ss_pred eeecceeeccccccCccccccccccccchHHHHHHHHHHHcCCCCcc
Confidence 346888888765443322222 22 256789999985 447778843
No 196
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=24.91 E-value=1.1e+02 Score=19.33 Aligned_cols=29 Identities=14% Similarity=0.269 Sum_probs=17.1
Q ss_pred CCccccccccccC--CCceEEeC-CCCccCcc
Q psy7279 73 AAQCVICLAPFQP--GEEVKELL-CHHKFHSE 101 (195)
Q Consensus 73 ~~~C~IC~~~~~~--~~~~~~l~-C~H~Fh~~ 101 (195)
...|+.|-..... .......+ ||+.++.+
T Consensus 28 Sq~C~~CG~~~~~~~~~r~~~C~~Cg~~~~rD 59 (69)
T PF07282_consen 28 SQTCPRCGHRNKKRRSGRVFTCPNCGFEMDRD 59 (69)
T ss_pred ccCccCcccccccccccceEEcCCCCCEECcH
Confidence 5679988887664 22333334 66666554
No 197
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=24.74 E-value=23 Score=27.15 Aligned_cols=45 Identities=22% Similarity=0.388 Sum_probs=26.9
Q ss_pred ccccccccCCCceEEeC-CCCccCccChhhhhccCccccccccccccCC
Q psy7279 77 VICLAPFQPGEEVKELL-CHHKFHSECLEPWLRERQHCPLCRNAVSVGS 124 (195)
Q Consensus 77 ~IC~~~~~~~~~~~~l~-C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~~~ 124 (195)
.||+.--...+....-| =.+.||..|-.+-+. .||.|..++..+.
T Consensus 8 qiC~NGH~~t~~~~~~p~~~~~fC~kCG~~tI~---~Cp~C~~~IrG~y 53 (158)
T PF10083_consen 8 QICLNGHVITDSYDKNPELREKFCSKCGAKTIT---SCPNCSTPIRGDY 53 (158)
T ss_pred HHccCccccccccccCchHHHHHHHHhhHHHHH---HCcCCCCCCCCce
Confidence 36666433222222222 346799999776543 6999999886553
No 198
>KOG1245|consensus
Probab=24.63 E-value=18 Score=37.10 Aligned_cols=48 Identities=31% Similarity=0.524 Sum_probs=35.5
Q ss_pred CCccccccccccCCCceEEeCCCCccCccChhhhhcc----Ccccccccccc
Q psy7279 73 AAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRE----RQHCPLCRNAV 120 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~----~~~CP~Cr~~~ 120 (195)
...|.||.......+-.....|.-.||..|+..-+.. .-.||-||..-
T Consensus 1108 ~~~c~~cr~k~~~~~m~lc~~c~~~~h~~C~rp~~~~~~~~dW~C~~c~~e~ 1159 (1404)
T KOG1245|consen 1108 NALCKVCRRKKQDEKMLLCDECLSGFHLFCLRPALSSVPPGDWMCPSCRKEH 1159 (1404)
T ss_pred hhhhhhhhhcccchhhhhhHhhhhhHHHHhhhhhhccCCcCCccCCccchhh
Confidence 6689999998764333333458889999999887754 33699998865
No 199
>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.
Probab=23.90 E-value=28 Score=21.60 Aligned_cols=10 Identities=30% Similarity=1.158 Sum_probs=5.1
Q ss_pred cccccccccc
Q psy7279 111 QHCPLCRNAV 120 (195)
Q Consensus 111 ~~CP~Cr~~~ 120 (195)
.+||+|...+
T Consensus 25 atCP~C~a~~ 34 (54)
T PF09237_consen 25 ATCPICGAVI 34 (54)
T ss_dssp EE-TTT--EE
T ss_pred CCCCcchhhc
Confidence 3699997766
No 200
>PF09943 DUF2175: Uncharacterized protein conserved in archaea (DUF2175); InterPro: IPR018686 This family of various hypothetical archaeal proteins has no known function.
Probab=22.97 E-value=38 Score=23.98 Aligned_cols=31 Identities=26% Similarity=0.463 Sum_probs=22.8
Q ss_pred ccccccccccCCCceEEeCCCCccCccChhhh
Q psy7279 75 QCVICLAPFQPGEEVKELLCHHKFHSECLEPW 106 (195)
Q Consensus 75 ~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~w 106 (195)
.|.||-+.+..|+.-.-+ =+-..|+.|+..=
T Consensus 4 kC~iCg~~I~~gqlFTF~-~kG~VH~~C~~~~ 34 (101)
T PF09943_consen 4 KCYICGKPIYEGQLFTFT-KKGPVHYECFREK 34 (101)
T ss_pred EEEecCCeeeecceEEEe-cCCcEeHHHHHHH
Confidence 699999998877544433 4467899998763
No 201
>PF14353 CpXC: CpXC protein
Probab=22.87 E-value=50 Score=23.89 Aligned_cols=12 Identities=25% Similarity=0.753 Sum_probs=8.9
Q ss_pred cccccccccccc
Q psy7279 111 QHCPLCRNAVSV 122 (195)
Q Consensus 111 ~~CP~Cr~~~~~ 122 (195)
.+||.|...+..
T Consensus 39 ~~CP~Cg~~~~~ 50 (128)
T PF14353_consen 39 FTCPSCGHKFRL 50 (128)
T ss_pred EECCCCCCceec
Confidence 369999887653
No 202
>PF00130 C1_1: Phorbol esters/diacylglycerol binding domain (C1 domain); InterPro: IPR002219 Diacylglycerol (DAG) is an important second messenger. Phorbol esters (PE) are analogues of DAG and potent tumour promoters that cause a variety of physiological changes when administered to both cells and tissues. DAG activates a family of serine/threonine protein kinases, collectively known as protein kinase C (PKC) []. Phorbol esters can directly stimulate PKC. The N-terminal region of PKC, known as C1, has been shown [] to bind PE and DAG in a phospholipid and zinc-dependent fashion. The C1 region contains one or two copies (depending on the isozyme of PKC) of a cysteine-rich domain, which is about 50 amino-acid residues long, and which is essential for DAG/PE-binding. The DAG/PE-binding domain binds two zinc ions; the ligands of these metal ions are probably the six cysteines and two histidines that are conserved in this domain.; GO: 0035556 intracellular signal transduction; PDB: 1RFH_A 2FNF_X 3PFQ_A 1PTQ_A 1PTR_A 2VRW_B 1XA6_A 2ENN_A 1TBN_A 1TBO_A ....
Probab=22.29 E-value=48 Score=19.77 Aligned_cols=33 Identities=18% Similarity=0.358 Sum_probs=21.2
Q ss_pred CCccccccccc--cCCCceEEeCCCCccCccChhh
Q psy7279 73 AAQCVICLAPF--QPGEEVKELLCHHKFHSECLEP 105 (195)
Q Consensus 73 ~~~C~IC~~~~--~~~~~~~~l~C~H~Fh~~Ci~~ 105 (195)
...|.+|.+.+ .......-.-|+-..|..|+..
T Consensus 11 ~~~C~~C~~~i~g~~~~g~~C~~C~~~~H~~C~~~ 45 (53)
T PF00130_consen 11 PTYCDVCGKFIWGLGKQGYRCSWCGLVCHKKCLSK 45 (53)
T ss_dssp TEB-TTSSSBECSSSSCEEEETTTT-EEETTGGCT
T ss_pred CCCCcccCcccCCCCCCeEEECCCCChHhhhhhhh
Confidence 45799999988 2222333345999999999865
No 203
>KOG3726|consensus
Probab=21.78 E-value=35 Score=32.16 Aligned_cols=41 Identities=17% Similarity=0.472 Sum_probs=27.6
Q ss_pred CCcccccccccc-CCCceEEeCCCCccCccChhhhhccCcccccc
Q psy7279 73 AAQCVICLAPFQ-PGEEVKELLCHHKFHSECLEPWLRERQHCPLC 116 (195)
Q Consensus 73 ~~~C~IC~~~~~-~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~C 116 (195)
...|.+|...=. ..+-.+++.|+-.||..| |+.-.+.||+|
T Consensus 654 ~r~C~vcq~pedse~~v~rt~~C~~~~C~~c---~~~~~~~~~vC 695 (717)
T KOG3726|consen 654 IRTCKVCQLPEDSETDVCRTTFCYTPYCVAC---SLDYASISEVC 695 (717)
T ss_pred HHHHHHhcCCcCccccccCccccCCcchHhh---hhhhhccCccc
Confidence 347889987422 222345556988888887 55566789999
No 204
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=21.72 E-value=92 Score=17.77 Aligned_cols=16 Identities=31% Similarity=0.503 Sum_probs=11.9
Q ss_pred HHHHHHHHHhCCcccc
Q psy7279 158 EAFAEALVEAFPQVFP 173 (195)
Q Consensus 158 ~~~~~~~~~~~p~~~~ 173 (195)
++..+.+++|||.+-.
T Consensus 2 ~~~v~~L~~mFP~~~~ 17 (42)
T PF02845_consen 2 EEMVQQLQEMFPDLDR 17 (42)
T ss_dssp HHHHHHHHHHSSSS-H
T ss_pred HHHHHHHHHHCCCCCH
Confidence 4567889999998753
No 205
>TIGR02652 conserved hypothetical protein TIGR02652, cyanobacterial. Members of this family of conserved hypothetical proteins are found, so far, only in the Cyanobacteria. Members are about 170 amino acids long and share a motif CxxCx(14)CxxH near the amino end.
Probab=21.66 E-value=32 Score=25.89 Aligned_cols=16 Identities=25% Similarity=0.781 Sum_probs=12.0
Q ss_pred ccccccccccccCCCC
Q psy7279 111 QHCPLCRNAVSVGSIS 126 (195)
Q Consensus 111 ~~CP~Cr~~~~~~~~~ 126 (195)
-.||.||+.++.-.+.
T Consensus 10 i~CPhCRQ~ipALtLT 25 (163)
T TIGR02652 10 IRCPHCRQNIPALTLT 25 (163)
T ss_pred CcCchhhcccchheec
Confidence 4699999998764443
No 206
>PF09654 DUF2396: Protein of unknown function (DUF2396); InterPro: IPR013472 These conserved hypothetical proteins have so far been found only in the Cyanobacteria. They are about 170 amino acids long and contain a CxxCx(14)CxxH motif near the N terminus.
Probab=21.42 E-value=34 Score=25.76 Aligned_cols=16 Identities=25% Similarity=0.812 Sum_probs=11.9
Q ss_pred ccccccccccccCCCC
Q psy7279 111 QHCPLCRNAVSVGSIS 126 (195)
Q Consensus 111 ~~CP~Cr~~~~~~~~~ 126 (195)
-.||.||+.++.-.+.
T Consensus 7 i~CPhCRq~ipALtLT 22 (161)
T PF09654_consen 7 IQCPHCRQTIPALTLT 22 (161)
T ss_pred CcCchhhcccchheec
Confidence 3699999998764443
No 207
>PRK05978 hypothetical protein; Provisional
Probab=20.73 E-value=64 Score=24.51 Aligned_cols=20 Identities=20% Similarity=0.579 Sum_probs=15.8
Q ss_pred hhhccCccccccccccccCC
Q psy7279 105 PWLRERQHCPLCRNAVSVGS 124 (195)
Q Consensus 105 ~wl~~~~~CP~Cr~~~~~~~ 124 (195)
.+++.+..||.|-..+....
T Consensus 47 g~Lkv~~~C~~CG~~~~~~~ 66 (148)
T PRK05978 47 AFLKPVDHCAACGEDFTHHR 66 (148)
T ss_pred cccccCCCccccCCccccCC
Confidence 67888999999988775543
No 208
>PF12773 DZR: Double zinc ribbon
Probab=20.65 E-value=87 Score=18.44 Aligned_cols=24 Identities=29% Similarity=0.682 Sum_probs=11.8
Q ss_pred ccCccChhhhh---ccCcccccccccc
Q psy7279 97 KFHSECLEPWL---RERQHCPLCRNAV 120 (195)
Q Consensus 97 ~Fh~~Ci~~wl---~~~~~CP~Cr~~~ 120 (195)
.||..|-.... .....||.|...+
T Consensus 13 ~fC~~CG~~l~~~~~~~~~C~~Cg~~~ 39 (50)
T PF12773_consen 13 KFCPHCGTPLPPPDQSKKICPNCGAEN 39 (50)
T ss_pred cCChhhcCChhhccCCCCCCcCCcCCC
Confidence 34444544433 1234577776654
No 209
>PF14169 YdjO: Cold-inducible protein YdjO
Probab=20.55 E-value=51 Score=21.00 Aligned_cols=30 Identities=30% Similarity=0.892 Sum_probs=17.3
Q ss_pred eEEeCCCCccCccChhhhhcc------Ccccccccccccc
Q psy7279 89 VKELLCHHKFHSECLEPWLRE------RQHCPLCRNAVSV 122 (195)
Q Consensus 89 ~~~l~C~H~Fh~~Ci~~wl~~------~~~CP~Cr~~~~~ 122 (195)
..+..|.-- .|. .|.+. ...||+|..+...
T Consensus 16 t~VW~Ct~e---~C~-gWmR~nFs~~~~p~CPlC~s~M~~ 51 (59)
T PF14169_consen 16 TKVWECTSE---DCN-GWMRDNFSFEEEPVCPLCKSPMVS 51 (59)
T ss_pred eeeEEeCCC---CCC-cccccccccCCCccCCCcCCcccc
Confidence 344456552 332 46643 4579999887643
No 210
>KOG2789|consensus
Probab=20.08 E-value=69 Score=28.38 Aligned_cols=33 Identities=21% Similarity=0.628 Sum_probs=22.0
Q ss_pred CCccccccccccCCCceEEeCCCCccCccChhhh
Q psy7279 73 AAQCVICLAPFQPGEEVKELLCHHKFHSECLEPW 106 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~w 106 (195)
...|+||+-.+.... -...-|....|..|+...
T Consensus 74 ~~ecpicflyyps~~-n~~rcC~~~Ic~ecf~~~ 106 (482)
T KOG2789|consen 74 KTECPICFLYYPSAK-NLVRCCSETICGECFAPF 106 (482)
T ss_pred cccCceeeeeccccc-chhhhhccchhhhheecc
Confidence 358999999877421 222248888888887553
No 211
>KOG1701|consensus
Probab=20.08 E-value=17 Score=32.28 Aligned_cols=10 Identities=20% Similarity=0.717 Sum_probs=5.5
Q ss_pred CCCccCccCh
Q psy7279 94 CHHKFHSECL 103 (195)
Q Consensus 94 C~H~Fh~~Ci 103 (195)
||..||-.|+
T Consensus 352 ~GkayHp~CF 361 (468)
T KOG1701|consen 352 LGKAYHPGCF 361 (468)
T ss_pred cccccCCCce
Confidence 5555555554
Done!