Query psy7279
Match_columns 195
No_of_seqs 257 out of 1896
Neff 8.0
Searched_HMMs 29240
Date Fri Aug 16 22:37:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7279.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7279hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0b_A E3 ubiquitin-protein li 99.7 1.3E-17 4.6E-22 115.8 5.7 74 49-122 13-89 (91)
2 1x4j_A Ring finger protein 38; 99.6 6.4E-17 2.2E-21 108.1 2.6 68 56-123 4-73 (75)
3 2ect_A Ring finger protein 126 99.6 4.6E-15 1.6E-19 99.6 6.1 56 73-128 15-70 (78)
4 1iym_A EL5; ring-H2 finger, ub 99.5 2.8E-15 9.4E-20 94.0 3.7 49 73-121 5-54 (55)
5 2kiz_A E3 ubiquitin-protein li 99.5 5E-15 1.7E-19 97.1 4.0 51 73-123 14-64 (69)
6 2ep4_A Ring finger protein 24; 99.5 1E-14 3.4E-19 97.0 4.9 51 73-123 15-65 (74)
7 2ecl_A Ring-box protein 2; RNF 99.5 1.3E-14 4.4E-19 98.5 3.0 52 72-123 14-77 (81)
8 1v87_A Deltex protein 2; ring- 99.5 4.3E-14 1.5E-18 101.5 5.5 59 73-131 25-103 (114)
9 2ecm_A Ring finger and CHY zin 99.5 3.5E-14 1.2E-18 88.8 3.4 49 73-121 5-54 (55)
10 2d8t_A Dactylidin, ring finger 99.4 2.5E-14 8.6E-19 94.4 2.3 51 73-126 15-65 (71)
11 3ng2_A RNF4, snurf, ring finge 99.4 3.5E-14 1.2E-18 93.4 2.1 53 73-125 10-66 (71)
12 2djb_A Polycomb group ring fin 99.4 8.5E-14 2.9E-18 92.1 3.8 52 73-127 15-67 (72)
13 2ea6_A Ring finger protein 4; 99.4 4.7E-14 1.6E-18 92.1 2.2 51 72-122 14-68 (69)
14 2ysl_A Tripartite motif-contai 99.4 1.6E-13 5.5E-18 90.7 4.0 51 71-124 18-71 (73)
15 1chc_A Equine herpes virus-1 r 99.4 2.3E-13 7.7E-18 88.8 3.8 48 73-122 5-52 (68)
16 1t1h_A Gspef-atpub14, armadill 99.4 3.1E-13 1.1E-17 90.5 4.4 49 73-124 8-57 (78)
17 3dpl_R Ring-box protein 1; ubi 99.4 6.6E-14 2.3E-18 99.7 1.1 51 72-122 36-101 (106)
18 2yur_A Retinoblastoma-binding 99.4 2.9E-13 1E-17 90.0 4.1 49 73-124 15-66 (74)
19 2xeu_A Ring finger protein 4; 99.4 7.9E-14 2.7E-18 89.7 1.2 52 73-124 3-58 (64)
20 2ecn_A Ring finger protein 141 99.4 2E-13 6.7E-18 89.7 3.1 48 73-124 15-62 (70)
21 2ct2_A Tripartite motif protei 99.4 3.7E-13 1.3E-17 92.0 4.5 53 72-124 14-70 (88)
22 3lrq_A E3 ubiquitin-protein li 99.4 3E-13 1E-17 95.2 3.4 50 73-125 22-73 (100)
23 2ecy_A TNF receptor-associated 99.4 2.3E-13 7.8E-18 88.4 2.5 49 73-124 15-64 (66)
24 4ayc_A E3 ubiquitin-protein li 99.3 1.7E-13 5.8E-18 101.9 2.0 47 73-122 53-99 (138)
25 2csy_A Zinc finger protein 183 99.3 3.2E-13 1.1E-17 91.3 2.9 46 73-121 15-60 (81)
26 2ecv_A Tripartite motif-contai 99.3 1.2E-12 4E-17 88.6 5.7 53 72-127 18-76 (85)
27 2egp_A Tripartite motif-contai 99.3 3E-13 1E-17 90.6 2.5 52 72-126 11-69 (79)
28 2d8s_A Cellular modulator of i 99.3 9.3E-13 3.2E-17 89.1 4.4 52 73-125 15-73 (80)
29 2ecw_A Tripartite motif-contai 99.3 1.1E-12 3.9E-17 88.7 4.6 52 72-126 18-75 (85)
30 4a0k_B E3 ubiquitin-protein li 99.3 7.4E-14 2.5E-18 101.0 -2.2 52 71-122 46-112 (117)
31 2y43_A E3 ubiquitin-protein li 99.3 4.9E-13 1.7E-17 93.7 2.1 47 73-122 22-69 (99)
32 2ysj_A Tripartite motif-contai 99.3 1.3E-12 4.5E-17 84.0 3.8 43 71-116 18-63 (63)
33 3fl2_A E3 ubiquitin-protein li 99.3 2.8E-12 9.5E-17 93.5 5.2 47 73-122 52-99 (124)
34 3ztg_A E3 ubiquitin-protein li 99.2 2.3E-12 8E-17 88.9 2.9 46 72-120 12-60 (92)
35 2ckl_A Polycomb group ring fin 99.2 2.8E-12 9.5E-17 91.3 2.7 47 73-122 15-62 (108)
36 3l11_A E3 ubiquitin-protein li 99.2 1.3E-12 4.4E-17 94.0 0.1 47 73-122 15-62 (115)
37 2ecj_A Tripartite motif-contai 99.2 5.5E-12 1.9E-16 79.4 3.0 42 72-116 14-58 (58)
38 1jm7_A BRCA1, breast cancer ty 99.2 4.9E-12 1.7E-16 90.2 3.0 50 73-125 21-73 (112)
39 1jm7_B BARD1, BRCA1-associated 99.2 7.4E-12 2.5E-16 90.4 3.9 45 73-122 22-67 (117)
40 1z6u_A NP95-like ring finger p 99.2 1.3E-11 4.6E-16 93.0 5.2 48 73-123 78-126 (150)
41 4ap4_A E3 ubiquitin ligase RNF 99.2 3.5E-12 1.2E-16 93.2 1.6 53 73-125 7-63 (133)
42 2ckl_B Ubiquitin ligase protei 99.2 7.7E-12 2.6E-16 95.4 2.9 47 73-122 54-102 (165)
43 1g25_A CDK-activating kinase a 99.2 6.4E-12 2.2E-16 81.2 1.9 53 73-125 3-58 (65)
44 2kr4_A Ubiquitin conjugation f 99.2 8.3E-12 2.8E-16 85.3 2.3 49 73-124 14-62 (85)
45 1bor_A Transcription factor PM 99.2 1.7E-11 5.8E-16 77.1 3.5 47 71-123 4-50 (56)
46 3hct_A TNF receptor-associated 99.2 7.5E-12 2.6E-16 90.5 1.9 49 72-123 17-66 (118)
47 2kre_A Ubiquitin conjugation f 99.1 9.7E-12 3.3E-16 87.6 2.2 49 73-124 29-77 (100)
48 1wgm_A Ubiquitin conjugation f 99.1 1.7E-11 5.7E-16 86.0 3.0 49 73-124 22-71 (98)
49 2ct0_A Non-SMC element 1 homol 99.1 1.6E-11 5.5E-16 81.6 2.7 49 73-123 15-65 (74)
50 3knv_A TNF receptor-associated 99.1 6.3E-12 2.2E-16 93.8 0.3 49 71-122 29-78 (141)
51 1rmd_A RAG1; V(D)J recombinati 99.1 1.6E-11 5.6E-16 88.3 2.4 49 73-124 23-72 (116)
52 1e4u_A Transcriptional repress 99.1 7.4E-11 2.5E-15 79.3 5.0 54 71-125 9-65 (78)
53 4ap4_A E3 ubiquitin ligase RNF 99.1 1.2E-11 4.1E-16 90.3 0.4 53 73-125 72-128 (133)
54 2vje_A E3 ubiquitin-protein li 99.0 5.8E-11 2E-15 76.8 1.3 46 73-121 8-56 (64)
55 4ic3_A E3 ubiquitin-protein li 99.0 7.9E-11 2.7E-15 78.2 1.8 43 73-122 24-67 (74)
56 2y1n_A E3 ubiquitin-protein li 99.0 1.1E-10 3.9E-15 99.9 3.1 48 73-123 332-380 (389)
57 2c2l_A CHIP, carboxy terminus 99.0 1.4E-10 4.9E-15 94.6 3.2 49 73-124 208-257 (281)
58 2yu4_A E3 SUMO-protein ligase 99.0 2.2E-10 7.7E-15 79.5 2.9 47 73-122 7-63 (94)
59 2vje_B MDM4 protein; proto-onc 99.0 1.3E-10 4.4E-15 74.9 1.4 46 73-121 7-55 (63)
60 3hcs_A TNF receptor-associated 98.9 4E-10 1.4E-14 86.2 1.7 50 71-123 16-66 (170)
61 2f42_A STIP1 homology and U-bo 98.8 5.8E-10 2E-14 86.2 1.2 50 73-125 106-156 (179)
62 2ea5_A Cell growth regulator w 98.8 3.1E-09 1E-13 69.4 4.0 44 72-122 14-58 (68)
63 3k1l_B Fancl; UBC, ring, RWD, 98.8 1.7E-09 5.8E-14 90.8 3.0 52 72-123 307-374 (381)
64 2ecg_A Baculoviral IAP repeat- 98.8 1.1E-09 3.9E-14 72.7 1.5 43 73-122 25-68 (75)
65 2yho_A E3 ubiquitin-protein li 98.7 2.5E-09 8.6E-14 71.9 1.9 43 73-122 18-61 (79)
66 3t6p_A Baculoviral IAP repeat- 98.7 1.1E-08 3.7E-13 86.8 3.7 43 73-122 295-338 (345)
67 1vyx_A ORF K3, K3RING; zinc-bi 98.7 7E-09 2.4E-13 66.1 1.9 48 72-122 5-59 (60)
68 3htk_C E3 SUMO-protein ligase 98.6 7E-09 2.4E-13 84.2 1.9 50 73-125 181-235 (267)
69 2bay_A PRE-mRNA splicing facto 98.6 7.8E-09 2.7E-13 66.0 1.1 52 73-127 3-55 (61)
70 1wim_A KIAA0161 protein; ring 98.5 1.7E-08 5.9E-13 69.7 0.7 46 73-119 5-61 (94)
71 3vk6_A E3 ubiquitin-protein li 98.2 3.5E-07 1.2E-11 63.3 1.8 48 75-124 3-51 (101)
72 3nw0_A Non-structural maintena 97.9 8.3E-06 2.8E-10 65.6 3.8 48 73-123 180-230 (238)
73 2ko5_A Ring finger protein Z; 96.7 0.00095 3.2E-08 45.4 2.6 53 72-129 27-80 (99)
74 2jun_A Midline-1; B-BOX, TRIM, 94.5 0.011 3.8E-07 40.5 1.2 33 73-107 3-38 (101)
75 1we9_A PHD finger family prote 93.8 0.042 1.4E-06 34.5 2.8 47 73-119 6-58 (64)
76 2lri_C Autoimmune regulator; Z 92.6 0.082 2.8E-06 33.6 2.8 43 73-119 12-59 (66)
77 2yql_A PHD finger protein 21A; 89.9 0.18 6.1E-06 30.7 2.2 43 72-118 8-55 (56)
78 2k16_A Transcription initiatio 89.6 0.08 2.7E-06 34.3 0.4 49 72-121 17-70 (75)
79 1mm2_A MI2-beta; PHD, zinc fin 89.3 0.26 9E-06 30.6 2.7 45 72-119 8-56 (61)
80 1wil_A KIAA1045 protein; ring 88.5 0.26 8.9E-06 32.8 2.3 33 73-106 15-47 (89)
81 3lqh_A Histone-lysine N-methyl 88.0 0.27 9.3E-06 37.6 2.5 49 73-121 2-65 (183)
82 2xb1_A Pygopus homolog 2, B-ce 88.0 0.13 4.4E-06 35.7 0.6 48 73-120 3-62 (105)
83 2a20_A Regulating synaptic mem 87.9 0.24 8.1E-06 30.6 1.7 47 72-118 8-59 (62)
84 1fp0_A KAP-1 corepressor; PHD 87.5 1 3.6E-05 30.1 4.9 44 72-119 24-72 (88)
85 1f62_A Transcription factor WS 87.4 0.23 7.9E-06 29.5 1.5 43 75-118 2-49 (51)
86 3u5n_A E3 ubiquitin-protein li 87.2 0.26 8.9E-06 38.1 2.0 45 72-120 6-55 (207)
87 3o36_A Transcription intermedi 86.9 0.34 1.2E-05 36.7 2.6 45 73-121 4-53 (184)
88 2yt5_A Metal-response element- 86.8 0.5 1.7E-05 29.5 2.9 49 72-120 5-62 (66)
89 2vpb_A Hpygo1, pygopus homolog 86.4 0.14 4.7E-06 32.4 0.0 32 73-104 8-41 (65)
90 2kgg_A Histone demethylase jar 86.3 0.46 1.6E-05 28.4 2.4 43 75-117 4-52 (52)
91 2ysm_A Myeloid/lymphoid or mix 85.6 0.7 2.4E-05 32.0 3.4 46 72-117 6-55 (111)
92 2l5u_A Chromodomain-helicase-D 85.5 0.35 1.2E-05 30.0 1.6 42 73-118 11-57 (61)
93 1xwh_A Autoimmune regulator; P 85.5 0.56 1.9E-05 29.4 2.6 44 72-119 7-55 (66)
94 1weu_A Inhibitor of growth fam 85.2 1.8 6.3E-05 29.1 5.2 45 73-120 36-86 (91)
95 3m62_A Ubiquitin conjugation f 85.2 0.32 1.1E-05 46.0 1.8 50 73-125 891-941 (968)
96 2puy_A PHD finger protein 21A; 84.8 0.29 9.9E-06 30.2 1.0 45 73-121 5-54 (60)
97 2e6r_A Jumonji/ARID domain-con 83.1 0.46 1.6E-05 32.0 1.5 46 73-119 16-66 (92)
98 1wep_A PHF8; structural genomi 81.5 1.7 5.7E-05 28.2 3.7 47 73-120 12-64 (79)
99 1wfk_A Zinc finger, FYVE domai 81.4 1.2 4.2E-05 29.6 3.1 51 73-123 9-67 (88)
100 1wev_A Riken cDNA 1110020M19; 81.2 1.2 4.2E-05 29.6 3.1 49 73-121 16-74 (88)
101 1z2q_A LM5-1; membrane protein 80.5 0.77 2.6E-05 30.3 1.8 49 73-121 21-78 (84)
102 3v43_A Histone acetyltransfera 80.0 1.1 3.7E-05 31.2 2.5 44 75-118 63-111 (112)
103 2cs3_A Protein C14ORF4, MY039 79.8 0.97 3.3E-05 29.7 2.1 36 73-109 15-52 (93)
104 1weo_A Cellulose synthase, cat 79.7 3.3 0.00011 27.7 4.7 50 73-122 16-70 (93)
105 1wee_A PHD finger family prote 79.2 0.69 2.4E-05 29.5 1.2 47 73-120 16-67 (72)
106 2ro1_A Transcription intermedi 78.6 0.93 3.2E-05 34.6 2.0 45 73-120 2-50 (189)
107 1y02_A CARP2, FYVE-ring finger 78.2 0.68 2.3E-05 32.9 1.0 48 73-120 19-67 (120)
108 2ekf_A Ancient ubiquitous prot 76.6 2.3 7.9E-05 26.4 3.0 23 151-173 7-29 (61)
109 2ri7_A Nucleosome-remodeling f 76.5 0.5 1.7E-05 35.3 -0.1 47 73-120 8-60 (174)
110 2lv9_A Histone-lysine N-methyl 75.9 1.1 3.6E-05 30.5 1.5 43 74-118 29-75 (98)
111 2e6s_A E3 ubiquitin-protein li 75.9 1.2 4.2E-05 28.9 1.7 45 73-118 26-76 (77)
112 2ejs_A Autocrine motility fact 75.6 2.1 7.1E-05 26.3 2.6 23 151-173 7-29 (58)
113 1wem_A Death associated transc 74.9 1.2 4E-05 28.7 1.4 46 73-120 16-71 (76)
114 3o70_A PHD finger protein 13; 74.6 2.2 7.6E-05 26.9 2.7 44 73-118 19-66 (68)
115 2l43_A N-teminal domain from h 74.2 1.7 5.7E-05 29.0 2.1 52 73-124 25-80 (88)
116 3ask_A E3 ubiquitin-protein li 73.1 1.9 6.3E-05 34.0 2.4 45 73-118 174-224 (226)
117 1wen_A Inhibitor of growth fam 72.5 3.5 0.00012 26.2 3.2 43 73-120 16-66 (71)
118 2yw8_A RUN and FYVE domain-con 71.8 3.2 0.00011 27.0 3.0 48 73-120 19-73 (82)
119 1z60_A TFIIH basal transcripti 71.6 0.86 2.9E-05 28.2 0.1 42 74-116 16-58 (59)
120 4gne_A Histone-lysine N-methyl 71.3 5.8 0.0002 27.4 4.4 45 71-121 13-64 (107)
121 2dar_A PDZ and LIM domain prot 70.8 4.8 0.00016 26.2 3.8 40 73-123 25-64 (90)
122 3asl_A E3 ubiquitin-protein li 70.5 1 3.4E-05 28.7 0.3 43 75-118 20-68 (70)
123 1zbd_B Rabphilin-3A; G protein 70.3 2.5 8.6E-05 30.4 2.4 48 72-119 54-107 (134)
124 1x4u_A Zinc finger, FYVE domai 69.2 6.3 0.00021 25.7 4.0 33 73-105 14-47 (84)
125 1joc_A EEA1, early endosomal a 69.1 2.9 0.0001 29.6 2.5 34 73-106 69-103 (125)
126 1vfy_A Phosphatidylinositol-3- 68.8 3.2 0.00011 26.4 2.5 34 73-106 11-45 (73)
127 2kwj_A Zinc finger protein DPF 68.6 6.1 0.00021 27.3 4.1 33 74-106 2-41 (114)
128 1dvp_A HRS, hepatocyte growth 68.4 3.2 0.00011 32.1 2.9 34 73-106 161-195 (220)
129 3v43_A Histone acetyltransfera 67.9 3.4 0.00012 28.5 2.6 33 73-105 5-43 (112)
130 3i2d_A E3 SUMO-protein ligase 66.8 3.2 0.00011 35.1 2.6 50 73-125 249-303 (371)
131 2lbm_A Transcriptional regulat 66.5 2.5 8.6E-05 30.8 1.8 43 72-118 62-116 (142)
132 3t7l_A Zinc finger FYVE domain 66.5 3.8 0.00013 27.2 2.5 49 73-121 20-75 (90)
133 1x4l_A Skeletal muscle LIM-pro 66.4 6 0.00021 24.4 3.4 43 73-123 5-48 (72)
134 3shb_A E3 ubiquitin-protein li 66.2 1.6 5.3E-05 28.4 0.5 43 75-118 28-76 (77)
135 2kwj_A Zinc finger protein DPF 66.0 1.2 4.3E-05 31.0 0.0 46 75-121 60-110 (114)
136 3zyq_A Hepatocyte growth facto 65.8 3.5 0.00012 32.2 2.6 49 73-121 164-221 (226)
137 1wew_A DNA-binding family prot 65.8 2 6.9E-05 27.7 1.0 46 73-120 16-73 (78)
138 2d8z_A Four and A half LIM dom 65.8 5.7 0.0002 24.3 3.2 39 73-122 5-43 (70)
139 2ku3_A Bromodomain-containing 65.4 2.9 9.9E-05 26.6 1.7 48 72-119 15-66 (71)
140 2dj7_A Actin-binding LIM prote 64.0 7.5 0.00026 24.8 3.6 39 73-121 15-53 (80)
141 1x64_A Alpha-actinin-2 associa 63.8 11 0.00038 24.3 4.5 39 73-122 25-63 (89)
142 2rsd_A E3 SUMO-protein ligase 61.6 2.2 7.6E-05 26.8 0.6 43 74-118 11-64 (68)
143 4fo9_A E3 SUMO-protein ligase 61.5 4.7 0.00016 33.9 2.7 49 73-124 215-268 (360)
144 2ysm_A Myeloid/lymphoid or mix 61.0 2.3 7.8E-05 29.3 0.6 44 75-119 56-104 (111)
145 1x62_A C-terminal LIM domain p 60.6 12 0.0004 23.6 4.0 39 73-122 15-53 (79)
146 1iml_A CRIP, cysteine rich int 59.7 3.2 0.00011 26.1 1.1 38 75-122 2-39 (76)
147 2d8x_A Protein pinch; LIM doma 59.5 4.8 0.00016 24.7 1.9 40 73-123 5-44 (70)
148 3c6w_A P28ING5, inhibitor of g 59.4 2 6.8E-05 26.3 0.1 41 73-118 9-57 (59)
149 4g3o_A E3 ubiquitin-protein li 59.0 4.1 0.00014 25.0 1.4 19 155-173 15-33 (58)
150 1nyp_A Pinch protein; LIM doma 58.1 5.3 0.00018 24.2 1.9 39 73-122 5-43 (66)
151 2gmg_A Hypothetical protein PF 57.5 2.8 9.4E-05 29.0 0.5 27 89-120 68-94 (105)
152 2co8_A NEDD9 interacting prote 57.3 13 0.00045 23.7 3.9 42 73-124 15-56 (82)
153 3o7a_A PHD finger protein 13 v 57.3 5.4 0.00018 23.5 1.8 40 78-118 8-51 (52)
154 2jmi_A Protein YNG1, ING1 homo 57.0 3.7 0.00013 27.5 1.1 44 73-119 26-76 (90)
155 2o35_A Hypothetical protein DU 56.5 2.1 7.2E-05 29.2 -0.2 13 97-109 42-54 (105)
156 1x61_A Thyroid receptor intera 56.5 10 0.00035 23.2 3.2 40 73-121 5-44 (72)
157 3fyb_A Protein of unknown func 56.2 2.2 7.4E-05 29.1 -0.2 12 97-108 41-52 (104)
158 2cu8_A Cysteine-rich protein 2 56.2 5.7 0.0002 24.9 1.9 41 73-123 9-49 (76)
159 3kv5_D JMJC domain-containing 56.0 2.9 9.9E-05 36.6 0.5 47 73-120 37-89 (488)
160 3ql9_A Transcriptional regulat 55.9 4.6 0.00016 28.9 1.5 43 72-118 56-110 (129)
161 2ct7_A Ring finger protein 31; 55.4 4.4 0.00015 26.6 1.2 30 89-118 43-75 (86)
162 2cor_A Pinch protein; LIM doma 55.3 12 0.00042 23.6 3.5 40 73-123 15-54 (79)
163 2jmo_A Parkin; IBR, E3 ligase, 54.8 2.2 7.4E-05 27.8 -0.4 19 93-113 55-73 (80)
164 2cur_A Skeletal muscle LIM-pro 54.5 6.8 0.00023 23.9 2.0 39 73-122 5-43 (69)
165 1wyh_A SLIM 2, skeletal muscle 54.4 12 0.00041 22.9 3.2 41 73-122 5-45 (72)
166 2d8y_A Eplin protein; LIM doma 54.3 16 0.00054 23.6 4.0 41 73-123 15-55 (91)
167 1x63_A Skeletal muscle LIM-pro 54.3 11 0.00037 23.8 3.0 41 73-122 15-55 (82)
168 2zet_C Melanophilin; complex, 54.2 5.9 0.0002 29.1 1.9 46 73-119 68-117 (153)
169 1a7i_A QCRP2 (LIM1); LIM domai 53.4 7.7 0.00026 24.6 2.2 41 73-123 7-47 (81)
170 2cuq_A Four and A half LIM dom 52.4 10 0.00035 23.8 2.7 39 73-122 15-53 (80)
171 1g47_A Pinch protein; LIM doma 52.4 16 0.00054 22.6 3.6 42 73-123 11-52 (77)
172 3mpx_A FYVE, rhogef and PH dom 52.2 3 0.0001 35.3 0.0 48 73-120 375-430 (434)
173 1v6g_A Actin binding LIM prote 51.6 9.8 0.00033 24.0 2.5 37 74-121 16-52 (81)
174 1wig_A KIAA1808 protein; LIM d 50.3 11 0.00036 23.5 2.5 38 73-121 5-42 (73)
175 2jrp_A Putative cytoplasmic pr 49.9 3.6 0.00012 27.0 0.1 40 74-121 3-42 (81)
176 2l4z_A DNA endonuclease RBBP8, 49.4 7.9 0.00027 27.0 1.9 39 73-121 61-99 (123)
177 3kqi_A GRC5, PHD finger protei 48.8 3.9 0.00013 26.1 0.2 45 75-120 12-62 (75)
178 1x68_A FHL5 protein; four-and- 48.7 6.9 0.00024 24.5 1.4 41 73-121 5-46 (76)
179 1x3h_A Leupaxin; paxillin fami 48.2 11 0.00038 23.6 2.3 39 74-123 16-54 (80)
180 1x6a_A LIMK-2, LIM domain kina 48.2 12 0.0004 23.6 2.4 38 73-121 15-52 (81)
181 2l3k_A Rhombotin-2, linker, LI 47.1 12 0.00039 25.9 2.4 28 75-103 10-37 (123)
182 2fiy_A Protein FDHE homolog; F 47.1 9.2 0.00032 31.4 2.2 46 72-119 181-231 (309)
183 1x4k_A Skeletal muscle LIM-pro 46.8 13 0.00045 22.7 2.5 41 73-122 5-45 (72)
184 2d8v_A Zinc finger FYVE domain 46.7 12 0.00042 23.4 2.2 30 73-106 8-38 (67)
185 2dlo_A Thyroid receptor-intera 46.6 13 0.00043 23.5 2.4 40 73-123 15-54 (81)
186 1wd2_A Ariadne-1 protein homol 45.5 12 0.00039 22.9 2.0 36 74-109 7-47 (60)
187 2jvx_A NF-kappa-B essential mo 45.4 5.8 0.0002 20.6 0.5 12 111-122 4-15 (28)
188 2egq_A FHL1 protein; LIM domai 45.1 11 0.00039 23.3 2.0 42 73-122 15-58 (77)
189 2jne_A Hypothetical protein YF 44.7 9.6 0.00033 25.9 1.6 41 73-121 32-72 (101)
190 3f6q_B LIM and senescent cell 41.7 14 0.00047 22.4 2.0 42 73-123 11-52 (72)
191 1zfo_A LAsp-1; LIM domain, zin 38.0 13 0.00044 19.3 1.1 28 74-103 4-31 (31)
192 2vnf_A ING 4, P29ING4, inhibit 37.6 6.8 0.00023 23.9 -0.0 41 73-118 10-58 (60)
193 2cup_A Skeletal muscle LIM-pro 36.4 23 0.00079 23.1 2.5 10 75-84 7-16 (101)
194 3mjh_B Early endosome antigen 36.0 10 0.00035 20.5 0.5 11 111-121 6-16 (34)
195 2g6q_A Inhibitor of growth pro 35.0 8.1 0.00028 23.7 0.0 43 73-118 11-59 (62)
196 2iyb_E Testin, TESS, TES; LIM 34.8 21 0.00071 21.4 1.9 40 75-123 4-45 (65)
197 1loi_A Cyclic 3',5'-AMP specif 34.2 4.9 0.00017 19.7 -0.8 12 97-108 6-17 (26)
198 1j2o_A FLIN2, fusion of rhombo 33.4 34 0.0012 23.1 3.1 38 74-121 4-41 (114)
199 2pv0_B DNA (cytosine-5)-methyl 30.2 21 0.0007 30.3 1.7 43 73-118 93-147 (386)
200 2ehe_A Four and A half LIM dom 29.5 36 0.0012 21.2 2.5 40 74-122 16-55 (82)
201 2csz_A Synaptotagmin-like prot 29.5 38 0.0013 21.8 2.5 46 72-117 24-71 (76)
202 2rgt_A Fusion of LIM/homeobox 28.3 43 0.0015 24.2 3.1 46 73-123 33-78 (169)
203 3a1b_A DNA (cytosine-5)-methyl 26.8 19 0.00064 26.7 0.8 32 73-108 79-113 (159)
204 2jny_A Uncharacterized BCR; st 26.6 23 0.0008 22.1 1.1 19 104-122 4-22 (67)
205 2jtn_A LIM domain-binding prot 25.5 71 0.0024 23.3 3.9 29 73-103 60-88 (182)
206 1b8t_A Protein (CRP1); LIM dom 25.0 38 0.0013 25.1 2.3 40 73-122 115-154 (192)
207 3c5k_A HD6, histone deacetylas 24.6 30 0.001 23.7 1.5 26 73-101 24-49 (109)
208 3kv4_A PHD finger protein 8; e 24.5 14 0.00047 32.0 -0.4 47 75-121 6-58 (447)
209 2pk7_A Uncharacterized protein 22.0 27 0.00091 22.0 0.7 17 106-122 4-20 (69)
210 2lcq_A Putative toxin VAPC6; P 21.6 44 0.0015 24.2 2.0 25 90-120 134-158 (165)
211 1m3v_A FLIN4, fusion of the LI 20.5 32 0.0011 23.6 0.9 52 74-125 33-84 (122)
212 1rut_X Flinc4, fusion protein 20.4 53 0.0018 24.2 2.3 28 95-122 54-81 (188)
213 2kpi_A Uncharacterized protein 20.1 23 0.00078 21.3 0.1 18 105-122 5-22 (56)
No 1
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.70 E-value=1.3e-17 Score=115.75 Aligned_cols=74 Identities=31% Similarity=0.736 Sum_probs=63.9
Q ss_pred CCCCCCHHHHcCCCceecCCCCC---CCCccccccccccCCCceEEeCCCCccCccChhhhhccCcccccccccccc
Q psy7279 49 PRAPFSTRRFGQIPSIAFPADEA---PAAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQHCPLCRNAVSV 122 (195)
Q Consensus 49 p~~~~s~~~~~~l~~~~~~~~~~---~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 122 (195)
...+++++.++.||...+..... .+..|+||++.|..++.++.++|+|.||..||..|+..+.+||+||..+..
T Consensus 13 ~~~~~s~~~i~~lp~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 13 ANPPASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp CCCCCCHHHHHTSCEEECCTTCSSSSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred CCCCCCHHHHHhCCCeeecccccccCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccCCC
Confidence 34567999999999988776542 367899999999987788999999999999999999999999999998754
No 2
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=6.4e-17 Score=108.12 Aligned_cols=68 Identities=31% Similarity=0.869 Sum_probs=55.3
Q ss_pred HHHcCCCceecCCCC--CCCCccccccccccCCCceEEeCCCCccCccChhhhhccCccccccccccccC
Q psy7279 56 RRFGQIPSIAFPADE--APAAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQHCPLCRNAVSVG 123 (195)
Q Consensus 56 ~~~~~l~~~~~~~~~--~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 123 (195)
+.++.||...+.... ..+..|+||++.+..++.++.++|+|.||..||..|++.+.+||+||+.+...
T Consensus 4 ~~i~~lp~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 4 GSSGQLPSYRFNPNNHQSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGPS 73 (75)
T ss_dssp CCCSSCCCEEBCSSSCSSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCCC
T ss_pred hhHhhCCcEEecCccccCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCCC
Confidence 345567766665432 23678999999999877788999999999999999999999999999988653
No 3
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.56 E-value=4.6e-15 Score=99.63 Aligned_cols=56 Identities=32% Similarity=0.944 Sum_probs=49.4
Q ss_pred CCccccccccccCCCceEEeCCCCccCccChhhhhccCccccccccccccCCCCCC
Q psy7279 73 AAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQHCPLCRNAVSVGSISSE 128 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~~~~~~~ 128 (195)
+..|+||++.|..+..+..++|+|.||..||.+|++.+.+||+||..+.......+
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~ 70 (78)
T 2ect_A 15 GLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNTATN 70 (78)
T ss_dssp SCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCCSCSCCC
T ss_pred CCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCCcccCCC
Confidence 67899999999877777888999999999999999999999999999987665443
No 4
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.54 E-value=2.8e-15 Score=94.00 Aligned_cols=49 Identities=45% Similarity=1.055 Sum_probs=44.9
Q ss_pred CCccccccccccCCCceEEeC-CCCccCccChhhhhccCccccccccccc
Q psy7279 73 AAQCVICLAPFQPGEEVKELL-CHHKFHSECLEPWLRERQHCPLCRNAVS 121 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l~-C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 121 (195)
+..|+||++.+..++.+..++ |+|.||..||.+|++.+.+||+||+.+.
T Consensus 5 ~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 5 GVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp SCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 568999999999877788898 9999999999999999999999998764
No 5
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.53 E-value=5e-15 Score=97.13 Aligned_cols=51 Identities=37% Similarity=0.996 Sum_probs=46.3
Q ss_pred CCccccccccccCCCceEEeCCCCccCccChhhhhccCccccccccccccC
Q psy7279 73 AAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQHCPLCRNAVSVG 123 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 123 (195)
+..|+||++.+..+..++.++|+|.||..||..|+..+.+||+||..+...
T Consensus 14 ~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 14 EEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQ 64 (69)
T ss_dssp CCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCSC
T ss_pred CCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccCc
Confidence 678999999998777888999999999999999999989999999988653
No 6
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=1e-14 Score=96.96 Aligned_cols=51 Identities=39% Similarity=0.888 Sum_probs=46.2
Q ss_pred CCccccccccccCCCceEEeCCCCccCccChhhhhccCccccccccccccC
Q psy7279 73 AAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQHCPLCRNAVSVG 123 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 123 (195)
+..|+||++.+..+.....++|+|.||..||..|++.+.+||+||..+...
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~ 65 (74)
T 2ep4_A 15 HELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQL 65 (74)
T ss_dssp SCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSSC
T ss_pred CCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCcccccc
Confidence 678999999998877888889999999999999999988999999988643
No 7
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=1.3e-14 Score=98.50 Aligned_cols=52 Identities=29% Similarity=0.742 Sum_probs=42.2
Q ss_pred CCCccccccccccC-----------CCceEEeC-CCCccCccChhhhhccCccccccccccccC
Q psy7279 72 PAAQCVICLAPFQP-----------GEEVKELL-CHHKFHSECLEPWLRERQHCPLCRNAVSVG 123 (195)
Q Consensus 72 ~~~~C~IC~~~~~~-----------~~~~~~l~-C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 123 (195)
.+..|+||++.|.. ++.++.++ |+|.||..||.+|+..+.+||+||+.+...
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~ 77 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQ 77 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCEE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcchh
Confidence 36678888888853 33456665 999999999999999999999999987643
No 8
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.47 E-value=4.3e-14 Score=101.54 Aligned_cols=59 Identities=22% Similarity=0.504 Sum_probs=46.3
Q ss_pred CCccccccccccCCC---------------ceEEeCCCCccCccChhhhh-----ccCccccccccccccCCCCCCCCC
Q psy7279 73 AAQCVICLAPFQPGE---------------EVKELLCHHKFHSECLEPWL-----RERQHCPLCRNAVSVGSISSENGS 131 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~---------------~~~~l~C~H~Fh~~Ci~~wl-----~~~~~CP~Cr~~~~~~~~~~~~~~ 131 (195)
+..|+||++.|..+. ....++|+|.||..||..|+ ..+.+||+||..+......++.+.
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~~g~qp~g~ 103 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKTGTQPWGK 103 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSCSSSCTTSS
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCCCCCCCCCe
Confidence 568999999986432 23367899999999999999 446789999999987765555543
No 9
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.45 E-value=3.5e-14 Score=88.81 Aligned_cols=49 Identities=35% Similarity=0.741 Sum_probs=42.7
Q ss_pred CCccccccccccCC-CceEEeCCCCccCccChhhhhccCccccccccccc
Q psy7279 73 AAQCVICLAPFQPG-EEVKELLCHHKFHSECLEPWLRERQHCPLCRNAVS 121 (195)
Q Consensus 73 ~~~C~IC~~~~~~~-~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 121 (195)
+..|+||++.+..+ ..++.++|+|.||..||.+|++.+.+||+||..+.
T Consensus 5 ~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 5 SSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 66899999998643 34777889999999999999998899999998874
No 10
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=2.5e-14 Score=94.42 Aligned_cols=51 Identities=25% Similarity=0.561 Sum_probs=45.4
Q ss_pred CCccccccccccCCCceEEeCCCCccCccChhhhhccCccccccccccccCCCC
Q psy7279 73 AAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQHCPLCRNAVSVGSIS 126 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~~~~~ 126 (195)
+..|+||++.+. .++.++|+|.||..||..|+..+..||+||..+....+.
T Consensus 15 ~~~C~IC~~~~~---~~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 65 (71)
T 2d8t_A 15 VPECAICLQTCV---HPVSLPCKHVFCYLCVKGASWLGKRCALCRQEIPEDFLD 65 (71)
T ss_dssp CCBCSSSSSBCS---SEEEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCHHHHS
T ss_pred CCCCccCCcccC---CCEEccCCCHHHHHHHHHHHHCCCcCcCcCchhCHhhcc
Confidence 678999999987 778899999999999999999999999999998765443
No 11
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.42 E-value=3.5e-14 Score=93.38 Aligned_cols=53 Identities=28% Similarity=0.699 Sum_probs=45.1
Q ss_pred CCccccccccccC----CCceEEeCCCCccCccChhhhhccCccccccccccccCCC
Q psy7279 73 AAQCVICLAPFQP----GEEVKELLCHHKFHSECLEPWLRERQHCPLCRNAVSVGSI 125 (195)
Q Consensus 73 ~~~C~IC~~~~~~----~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~~~~ 125 (195)
+..|+||++.+.. +..++.++|+|.||..||.+|+..+.+||+||..+....+
T Consensus 10 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 66 (71)
T 3ng2_A 10 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRY 66 (71)
T ss_dssp CCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCCSC
T ss_pred CCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccChhhe
Confidence 6789999999873 1334788999999999999999999999999999876554
No 12
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=8.5e-14 Score=92.08 Aligned_cols=52 Identities=23% Similarity=0.482 Sum_probs=45.1
Q ss_pred CCccccccccccCCCceEEe-CCCCccCccChhhhhccCccccccccccccCCCCC
Q psy7279 73 AAQCVICLAPFQPGEEVKEL-LCHHKFHSECLEPWLRERQHCPLCRNAVSVGSISS 127 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l-~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~~~~~~ 127 (195)
+..|+||++.+. .++.+ +|+|.||..||..|+..+..||+||..+...+...
T Consensus 15 ~~~C~IC~~~~~---~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 67 (72)
T 2djb_A 15 YILCSICKGYLI---DATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQPLS 67 (72)
T ss_dssp GGSCTTTSSCCS---SCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSSCSCC
T ss_pred CCCCCCCChHHH---CcCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCcccccc
Confidence 678999999998 56666 89999999999999998899999999987765543
No 13
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=4.7e-14 Score=92.07 Aligned_cols=51 Identities=27% Similarity=0.657 Sum_probs=43.0
Q ss_pred CCCccccccccccCC----CceEEeCCCCccCccChhhhhccCcccccccccccc
Q psy7279 72 PAAQCVICLAPFQPG----EEVKELLCHHKFHSECLEPWLRERQHCPLCRNAVSV 122 (195)
Q Consensus 72 ~~~~C~IC~~~~~~~----~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 122 (195)
.+..|+||++.+... ..++.++|+|.||..||..|+..+.+||+||..+..
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 14 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp CCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 367899999998732 234788999999999999999999999999998753
No 14
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=1.6e-13 Score=90.70 Aligned_cols=51 Identities=27% Similarity=0.593 Sum_probs=43.7
Q ss_pred CCCCccccccccccCCCceEEeCCCCccCccChhhhhc---cCccccccccccccCC
Q psy7279 71 APAAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLR---ERQHCPLCRNAVSVGS 124 (195)
Q Consensus 71 ~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~---~~~~CP~Cr~~~~~~~ 124 (195)
..+..|+||++.+. .++.++|+|.||..||..|+. ....||+||..+...+
T Consensus 18 ~~~~~C~IC~~~~~---~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 71 (73)
T 2ysl_A 18 QEEVICPICLDILQ---KPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNA 71 (73)
T ss_dssp CCCCBCTTTCSBCS---SEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCC
T ss_pred ccCCEeccCCcccC---CeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCccc
Confidence 34678999999998 788889999999999999997 3568999999986544
No 15
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.38 E-value=2.3e-13 Score=88.81 Aligned_cols=48 Identities=35% Similarity=0.818 Sum_probs=42.5
Q ss_pred CCccccccccccCCCceEEeCCCCccCccChhhhhccCcccccccccccc
Q psy7279 73 AAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQHCPLCRNAVSV 122 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 122 (195)
+..|+||++.+. +.++.++|+|.||..|+..|+..+.+||+||..+..
T Consensus 5 ~~~C~IC~~~~~--~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 5 AERCPICLEDPS--NYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVES 52 (68)
T ss_dssp CCCCSSCCSCCC--SCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred CCCCeeCCcccc--CCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence 568999999987 345788999999999999999989999999998864
No 16
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.38 E-value=3.1e-13 Score=90.53 Aligned_cols=49 Identities=14% Similarity=0.403 Sum_probs=43.8
Q ss_pred CCccccccccccCCCceEEeCCCCccCccChhhhhcc-CccccccccccccCC
Q psy7279 73 AAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRE-RQHCPLCRNAVSVGS 124 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~-~~~CP~Cr~~~~~~~ 124 (195)
+..|+||++.+. .++.++|||.||..||..|+.. +.+||+||..+....
T Consensus 8 ~~~C~IC~~~~~---~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~ 57 (78)
T 1t1h_A 8 YFRCPISLELMK---DPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAG 57 (78)
T ss_dssp SSSCTTTSCCCS---SEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCC
T ss_pred cCCCCCcccccc---CCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhh
Confidence 678999999998 7888999999999999999987 789999999886543
No 17
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.37 E-value=6.6e-14 Score=99.73 Aligned_cols=51 Identities=31% Similarity=0.634 Sum_probs=42.9
Q ss_pred CCCccccccccccCCC---------------ceEEeCCCCccCccChhhhhccCcccccccccccc
Q psy7279 72 PAAQCVICLAPFQPGE---------------EVKELLCHHKFHSECLEPWLRERQHCPLCRNAVSV 122 (195)
Q Consensus 72 ~~~~C~IC~~~~~~~~---------------~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 122 (195)
.++.|+||++.|...- ..+.++|+|.||..||..|+..+.+||+||+.+..
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~~ 101 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEF 101 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCCE
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCccee
Confidence 4678999999987431 25667899999999999999999999999998643
No 18
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.37 E-value=2.9e-13 Score=90.01 Aligned_cols=49 Identities=22% Similarity=0.567 Sum_probs=42.3
Q ss_pred CCccccccccccCCCceEEeC-CCCccCccChhhhhccC--ccccccccccccCC
Q psy7279 73 AAQCVICLAPFQPGEEVKELL-CHHKFHSECLEPWLRER--QHCPLCRNAVSVGS 124 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l~-C~H~Fh~~Ci~~wl~~~--~~CP~Cr~~~~~~~ 124 (195)
+..|+||++.|. .++.++ |+|.||..||..|+..+ ..||+||..+...+
T Consensus 15 ~~~C~IC~~~~~---~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~ 66 (74)
T 2yur_A 15 ELLCLICKDIMT---DAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPD 66 (74)
T ss_dssp GGSCSSSCCCCT---TCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTT
T ss_pred CCCCcCCChHHh---CCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCcc
Confidence 678999999998 778899 99999999999999865 68999999764433
No 19
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.37 E-value=7.9e-14 Score=89.66 Aligned_cols=52 Identities=27% Similarity=0.638 Sum_probs=44.1
Q ss_pred CCccccccccccCC----CceEEeCCCCccCccChhhhhccCccccccccccccCC
Q psy7279 73 AAQCVICLAPFQPG----EEVKELLCHHKFHSECLEPWLRERQHCPLCRNAVSVGS 124 (195)
Q Consensus 73 ~~~C~IC~~~~~~~----~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~~~ 124 (195)
+..|+||++.+... +.+..++|+|.||..||.+|+..+.+||+||..+...+
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 58 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 58 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTTC
T ss_pred CCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCccc
Confidence 56899999998731 33478899999999999999999999999999987654
No 20
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=2e-13 Score=89.67 Aligned_cols=48 Identities=27% Similarity=0.817 Sum_probs=43.1
Q ss_pred CCccccccccccCCCceEEeCCCCccCccChhhhhccCccccccccccccCC
Q psy7279 73 AAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQHCPLCRNAVSVGS 124 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~~~ 124 (195)
+..|+||++.+. . +.++|+|.||..||..|+..+.+||+||..+....
T Consensus 15 ~~~C~IC~~~~~---~-~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 62 (70)
T 2ecn_A 15 EEECCICMDGRA---D-LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGAN 62 (70)
T ss_dssp CCCCSSSCCSCC---S-EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCCC
T ss_pred CCCCeeCCcCcc---C-cccCCCCcccHHHHHHHHHCcCcCCCcCCcccCCC
Confidence 678999999988 3 78899999999999999999999999999986543
No 21
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=3.7e-13 Score=91.96 Aligned_cols=53 Identities=30% Similarity=0.679 Sum_probs=44.8
Q ss_pred CCCccccccccccCCCc-eEEeCCCCccCccChhhhhccC---ccccccccccccCC
Q psy7279 72 PAAQCVICLAPFQPGEE-VKELLCHHKFHSECLEPWLRER---QHCPLCRNAVSVGS 124 (195)
Q Consensus 72 ~~~~C~IC~~~~~~~~~-~~~l~C~H~Fh~~Ci~~wl~~~---~~CP~Cr~~~~~~~ 124 (195)
....|+||++.|...+. ++.++|+|.||..||..|+..+ ..||+||..+...+
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 70 (88)
T 2ct2_A 14 EVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRITS 70 (88)
T ss_dssp SCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCSS
T ss_pred CCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccchh
Confidence 36789999999985433 8888999999999999999875 78999999886543
No 22
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.35 E-value=3e-13 Score=95.21 Aligned_cols=50 Identities=24% Similarity=0.752 Sum_probs=43.6
Q ss_pred CCccccccccccCCCceEE-eCCCCccCccChhhhhccC-ccccccccccccCCC
Q psy7279 73 AAQCVICLAPFQPGEEVKE-LLCHHKFHSECLEPWLRER-QHCPLCRNAVSVGSI 125 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~-l~C~H~Fh~~Ci~~wl~~~-~~CP~Cr~~~~~~~~ 125 (195)
+..|+||++.+. .++. ++|||.||..||..|+... ..||+||..+....+
T Consensus 22 ~~~C~IC~~~~~---~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l 73 (100)
T 3lrq_A 22 VFRCFICMEKLR---DARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLREL 73 (100)
T ss_dssp HTBCTTTCSBCS---SEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGC
T ss_pred CCCCccCCcccc---CccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHh
Confidence 568999999998 6777 8999999999999999887 699999999865443
No 23
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=2.3e-13 Score=88.43 Aligned_cols=49 Identities=20% Similarity=0.550 Sum_probs=42.3
Q ss_pred CCccccccccccCCCceEEeCCCCccCccChhhhhc-cCccccccccccccCC
Q psy7279 73 AAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLR-ERQHCPLCRNAVSVGS 124 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~-~~~~CP~Cr~~~~~~~ 124 (195)
+..|+||++.+. .++.++|+|.||..||..|+. ....||+||..+..++
T Consensus 15 ~~~C~IC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 64 (66)
T 2ecy_A 15 KYKCEKCHLVLC---SPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKDK 64 (66)
T ss_dssp CEECTTTCCEES---SCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTT
T ss_pred CCCCCCCChHhc---CeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhh
Confidence 678999999998 566689999999999999995 5678999999986543
No 24
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.35 E-value=1.7e-13 Score=101.90 Aligned_cols=47 Identities=36% Similarity=0.944 Sum_probs=42.8
Q ss_pred CCccccccccccCCCceEEeCCCCccCccChhhhhccCcccccccccccc
Q psy7279 73 AAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQHCPLCRNAVSV 122 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 122 (195)
+..|+||++.+. .++.++|||.||..||..|+..+.+||+||..+..
T Consensus 53 ~~~C~iC~~~~~---~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 53 ELQCIICSEYFI---EAVTLNCAHSFCSYCINEWMKRKIECPICRKDIKS 99 (138)
T ss_dssp HSBCTTTCSBCS---SEEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCC
T ss_pred cCCCcccCcccC---CceECCCCCCccHHHHHHHHHcCCcCCCCCCcCCC
Confidence 457999999998 78899999999999999999999999999998743
No 25
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=3.2e-13 Score=91.28 Aligned_cols=46 Identities=26% Similarity=0.619 Sum_probs=42.4
Q ss_pred CCccccccccccCCCceEEeCCCCccCccChhhhhccCccccccccccc
Q psy7279 73 AAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQHCPLCRNAVS 121 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 121 (195)
...|+||++.+. .++.++|+|.||..||..|+.....||+||..+.
T Consensus 15 ~~~C~IC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 15 PFRCFICRQAFQ---NPVVTKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CSBCSSSCSBCC---SEEECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCcCCCchhc---CeeEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 678999999998 6788999999999999999998899999999885
No 26
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=1.2e-12 Score=88.62 Aligned_cols=53 Identities=28% Similarity=0.630 Sum_probs=45.1
Q ss_pred CCCccccccccccCCCceEEeCCCCccCccChhhhhcc------CccccccccccccCCCCC
Q psy7279 72 PAAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRE------RQHCPLCRNAVSVGSISS 127 (195)
Q Consensus 72 ~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~------~~~CP~Cr~~~~~~~~~~ 127 (195)
.+..|+||++.+. .++.++|+|.||..|+..|+.. ...||+||..+....+..
T Consensus 18 ~~~~C~IC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~ 76 (85)
T 2ecv_A 18 EEVTCPICLELLT---QPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRP 76 (85)
T ss_dssp CCCCCTTTCSCCS---SCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCC
T ss_pred CCCCCCCCCcccC---CceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCc
Confidence 3678999999998 6677899999999999999976 678999999987655443
No 27
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.34 E-value=3e-13 Score=90.62 Aligned_cols=52 Identities=27% Similarity=0.597 Sum_probs=44.2
Q ss_pred CCCccccccccccCCCceEEeCCCCccCccChhhhhcc-------CccccccccccccCCCC
Q psy7279 72 PAAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRE-------RQHCPLCRNAVSVGSIS 126 (195)
Q Consensus 72 ~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~-------~~~CP~Cr~~~~~~~~~ 126 (195)
.+..|+||++.+. .++.++|+|.||..||..|+.. ...||+||..+....+.
T Consensus 11 ~~~~C~IC~~~~~---~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~ 69 (79)
T 2egp_A 11 EEVTCPICLELLT---EPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQ 69 (79)
T ss_dssp CCCEETTTTEECS---SCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGG
T ss_pred cCCCCcCCCcccC---CeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCC
Confidence 3678999999998 6677899999999999999976 56899999998765443
No 28
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=9.3e-13 Score=89.11 Aligned_cols=52 Identities=25% Similarity=0.615 Sum_probs=43.4
Q ss_pred CCccccccccccCCCceEEeCCC-----CccCccChhhhhccC--ccccccccccccCCC
Q psy7279 73 AAQCVICLAPFQPGEEVKELLCH-----HKFHSECLEPWLRER--QHCPLCRNAVSVGSI 125 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l~C~-----H~Fh~~Ci~~wl~~~--~~CP~Cr~~~~~~~~ 125 (195)
+..|.||++++..++. ..+||+ |.||..||.+|+..+ .+||+||..+..+..
T Consensus 15 ~~~C~IC~~~~~~~~~-l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~~ 73 (80)
T 2d8s_A 15 QDICRICHCEGDDESP-LITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMETK 73 (80)
T ss_dssp SCCCSSSCCCCCSSSC-EECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCCC
T ss_pred CCCCeEcCccccCCCe-eEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCcc
Confidence 6689999999876655 468996 999999999999865 589999999876544
No 29
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.32 E-value=1.1e-12 Score=88.71 Aligned_cols=52 Identities=27% Similarity=0.681 Sum_probs=44.5
Q ss_pred CCCccccccccccCCCceEEeCCCCccCccChhhhhcc------CccccccccccccCCCC
Q psy7279 72 PAAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRE------RQHCPLCRNAVSVGSIS 126 (195)
Q Consensus 72 ~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~------~~~CP~Cr~~~~~~~~~ 126 (195)
.+..|+||++.+. .++.++|+|.||..||..|+.. ...||+||..+....+.
T Consensus 18 ~~~~C~IC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~ 75 (85)
T 2ecw_A 18 EEVTCPICLELLK---EPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLK 75 (85)
T ss_dssp TTTSCTTTCSCCS---SCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCE
T ss_pred cCCCCcCCChhhC---cceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCC
Confidence 3678999999998 6778999999999999999977 66899999998765443
No 30
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.30 E-value=7.4e-14 Score=101.03 Aligned_cols=52 Identities=33% Similarity=0.659 Sum_probs=1.5
Q ss_pred CCCCccccccccccCC-------------C--ceEEeCCCCccCccChhhhhccCcccccccccccc
Q psy7279 71 APAAQCVICLAPFQPG-------------E--EVKELLCHHKFHSECLEPWLRERQHCPLCRNAVSV 122 (195)
Q Consensus 71 ~~~~~C~IC~~~~~~~-------------~--~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 122 (195)
..++.|+||++.|... + .+..++|+|.||..||..|+..+.+||+||..+..
T Consensus 46 ~~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~~ 112 (117)
T 4a0k_B 46 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEF 112 (117)
T ss_dssp CCC----------------------------------------------------------------
T ss_pred CCCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeeee
Confidence 3477899999998742 1 22335799999999999999999999999998643
No 31
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.30 E-value=4.9e-13 Score=93.70 Aligned_cols=47 Identities=28% Similarity=0.684 Sum_probs=42.3
Q ss_pred CCccccccccccCCCceEEe-CCCCccCccChhhhhccCcccccccccccc
Q psy7279 73 AAQCVICLAPFQPGEEVKEL-LCHHKFHSECLEPWLRERQHCPLCRNAVSV 122 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l-~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 122 (195)
+..|+||++.+. .++.+ +|||.||..||..|+..+..||+||..+..
T Consensus 22 ~~~C~IC~~~~~---~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 22 LLRCGICFEYFN---IAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp HTBCTTTCSBCS---SEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCCcccCChhhC---CcCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 568999999998 67777 899999999999999988999999998765
No 32
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=1.3e-12 Score=83.96 Aligned_cols=43 Identities=30% Similarity=0.647 Sum_probs=37.7
Q ss_pred CCCCccccccccccCCCceEEeCCCCccCccChhhhhc---cCcccccc
Q psy7279 71 APAAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLR---ERQHCPLC 116 (195)
Q Consensus 71 ~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~---~~~~CP~C 116 (195)
..+..|+||++.+. .++.++|+|.||..||.+|++ ....||+|
T Consensus 18 ~~~~~C~IC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 18 QEEVICPICLDILQ---KPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCBCTTTCSBCS---SCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred ccCCCCCcCCchhC---CeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 34778999999998 778889999999999999997 35689998
No 33
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.28 E-value=2.8e-12 Score=93.45 Aligned_cols=47 Identities=26% Similarity=0.636 Sum_probs=41.7
Q ss_pred CCccccccccccCCCceEEeCCCCccCccChhhhhccC-cccccccccccc
Q psy7279 73 AAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRER-QHCPLCRNAVSV 122 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~-~~CP~Cr~~~~~ 122 (195)
+..|+||++.+. .++.++|||.||..||..|+..+ ..||+||..+..
T Consensus 52 ~~~C~IC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 52 TFQCICCQELVF---RPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HTBCTTTSSBCS---SEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCCCCcCChHHc---CcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 568999999998 78889999999999999999854 489999998854
No 34
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.24 E-value=2.3e-12 Score=88.90 Aligned_cols=46 Identities=24% Similarity=0.625 Sum_probs=40.7
Q ss_pred CCCccccccccccCCCceEEeC-CCCccCccChhhhhcc--Ccccccccccc
Q psy7279 72 PAAQCVICLAPFQPGEEVKELL-CHHKFHSECLEPWLRE--RQHCPLCRNAV 120 (195)
Q Consensus 72 ~~~~C~IC~~~~~~~~~~~~l~-C~H~Fh~~Ci~~wl~~--~~~CP~Cr~~~ 120 (195)
.+..|+||++.|. .++.++ |||.||..||..|+.. ...||+||..+
T Consensus 12 ~~~~C~IC~~~~~---~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~ 60 (92)
T 3ztg_A 12 DELLCLICKDIMT---DAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQND 60 (92)
T ss_dssp TTTEETTTTEECS---SCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSS
T ss_pred cCCCCCCCChhhc---CceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcC
Confidence 3678999999998 788899 9999999999999964 35899999886
No 35
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.23 E-value=2.8e-12 Score=91.25 Aligned_cols=47 Identities=28% Similarity=0.707 Sum_probs=42.6
Q ss_pred CCccccccccccCCCceEEe-CCCCccCccChhhhhccCcccccccccccc
Q psy7279 73 AAQCVICLAPFQPGEEVKEL-LCHHKFHSECLEPWLRERQHCPLCRNAVSV 122 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l-~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 122 (195)
+..|+||++.+. .++.+ +|||.||..||..|+..+..||+||..+..
T Consensus 15 ~~~C~IC~~~~~---~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 15 HLMCVLCGGYFI---DATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHK 62 (108)
T ss_dssp GTBCTTTSSBCS---SEEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCS
T ss_pred cCCCccCChHHh---CcCEeCCCCChhhHHHHHHHHHhCCcCcCCCccccc
Confidence 668999999998 67777 999999999999999988999999998754
No 36
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.21 E-value=1.3e-12 Score=93.98 Aligned_cols=47 Identities=32% Similarity=0.726 Sum_probs=42.2
Q ss_pred CCccccccccccCCCceEEeCCCCccCccChhhhhcc-Ccccccccccccc
Q psy7279 73 AAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRE-RQHCPLCRNAVSV 122 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~-~~~CP~Cr~~~~~ 122 (195)
+..|+||++.+. .++.++|||.||..||..|+.. ...||+||..+..
T Consensus 15 ~~~C~iC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 15 ECQCGICMEILV---EPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHBCTTTCSBCS---SCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCccCCcccC---ceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 568999999998 7888899999999999999976 6789999998864
No 37
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.21 E-value=5.5e-12 Score=79.42 Aligned_cols=42 Identities=31% Similarity=0.844 Sum_probs=36.2
Q ss_pred CCCccccccccccCCCceEEeCCCCccCccChhhhhc---cCcccccc
Q psy7279 72 PAAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLR---ERQHCPLC 116 (195)
Q Consensus 72 ~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~---~~~~CP~C 116 (195)
.+..|+||++.+. .++.++|+|.||..||..|+. ....||+|
T Consensus 14 ~~~~C~IC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 14 VEASCSVCLEYLK---EPVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCBCSSSCCBCS---SCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cCCCCccCCcccC---ccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 3678999999998 567789999999999999954 56789998
No 38
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.21 E-value=4.9e-12 Score=90.19 Aligned_cols=50 Identities=32% Similarity=0.753 Sum_probs=42.3
Q ss_pred CCccccccccccCCCceEEeCCCCccCccChhhhhccCc---cccccccccccCCC
Q psy7279 73 AAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQ---HCPLCRNAVSVGSI 125 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~---~CP~Cr~~~~~~~~ 125 (195)
...|+||++.+. .++.++|||.||..||..|+..+. .||+||..+....+
T Consensus 21 ~~~C~IC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~ 73 (112)
T 1jm7_A 21 ILECPICLELIK---EPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSL 73 (112)
T ss_dssp HTSCSSSCCCCS---SCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTC
T ss_pred CCCCcccChhhc---CeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhc
Confidence 458999999988 667789999999999999998653 89999998865443
No 39
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.20 E-value=7.4e-12 Score=90.37 Aligned_cols=45 Identities=27% Similarity=0.614 Sum_probs=40.3
Q ss_pred CCccccccccccCCCceEEe-CCCCccCccChhhhhccCcccccccccccc
Q psy7279 73 AAQCVICLAPFQPGEEVKEL-LCHHKFHSECLEPWLRERQHCPLCRNAVSV 122 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l-~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 122 (195)
+..|+||++.|. .++.+ +|||.||..||..|+. ..||+||..+..
T Consensus 22 ~~~C~IC~~~~~---~pv~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~ 67 (117)
T 1jm7_B 22 LLRCSRCTNILR---EPVCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAWI 67 (117)
T ss_dssp TTSCSSSCSCCS---SCBCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCSC
T ss_pred CCCCCCCChHhh---CccEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCcc
Confidence 678999999998 67777 8999999999999998 789999998744
No 40
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.20 E-value=1.3e-11 Score=92.97 Aligned_cols=48 Identities=23% Similarity=0.591 Sum_probs=42.4
Q ss_pred CCccccccccccCCCceEEeCCCCccCccChhhhhccCc-cccccccccccC
Q psy7279 73 AAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQ-HCPLCRNAVSVG 123 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~-~CP~Cr~~~~~~ 123 (195)
+..|+||++.+. .++.++|+|.||..||..|+.... .||+||..+...
T Consensus 78 ~~~C~IC~~~~~---~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 78 SFMCVCCQELVY---QPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HTBCTTTSSBCS---SEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred CCEeecCChhhc---CCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 568999999998 788899999999999999998754 899999988654
No 41
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.19 E-value=3.5e-12 Score=93.20 Aligned_cols=53 Identities=26% Similarity=0.630 Sum_probs=45.1
Q ss_pred CCccccccccccCC----CceEEeCCCCccCccChhhhhccCccccccccccccCCC
Q psy7279 73 AAQCVICLAPFQPG----EEVKELLCHHKFHSECLEPWLRERQHCPLCRNAVSVGSI 125 (195)
Q Consensus 73 ~~~C~IC~~~~~~~----~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~~~~ 125 (195)
+..|+||++.|... ..++.++|||.||..||.+|++.+.+||+||..+.....
T Consensus 7 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~l 63 (133)
T 4ap4_A 7 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRY 63 (133)
T ss_dssp SCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTCE
T ss_pred CCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCccccc
Confidence 66899999998731 234889999999999999999999999999999876554
No 42
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.17 E-value=7.7e-12 Score=95.43 Aligned_cols=47 Identities=30% Similarity=0.740 Sum_probs=41.3
Q ss_pred CCccccccccccCCCceEEe-CCCCccCccChhhhhcc-Ccccccccccccc
Q psy7279 73 AAQCVICLAPFQPGEEVKEL-LCHHKFHSECLEPWLRE-RQHCPLCRNAVSV 122 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l-~C~H~Fh~~Ci~~wl~~-~~~CP~Cr~~~~~ 122 (195)
+..|+||++.+. .++.+ +|+|.||..||..|+.. +..||+||..+..
T Consensus 54 ~~~C~IC~~~~~---~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 54 ELMCPICLDMLK---NTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HHBCTTTSSBCS---SEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCCcccChHhh---CcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 558999999998 56666 89999999999999987 7789999998853
No 43
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.17 E-value=6.4e-12 Score=81.23 Aligned_cols=53 Identities=15% Similarity=0.467 Sum_probs=41.5
Q ss_pred CCccccccc-cccCCCc-eEEeCCCCccCccChhhhhcc-CccccccccccccCCC
Q psy7279 73 AAQCVICLA-PFQPGEE-VKELLCHHKFHSECLEPWLRE-RQHCPLCRNAVSVGSI 125 (195)
Q Consensus 73 ~~~C~IC~~-~~~~~~~-~~~l~C~H~Fh~~Ci~~wl~~-~~~CP~Cr~~~~~~~~ 125 (195)
+..|+||++ .+..... ...++|||.||..||.+|+.. ...||+||..+...++
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~ 58 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNF 58 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCC
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccccc
Confidence 568999999 7764322 246789999999999999754 5689999999866544
No 44
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.16 E-value=8.3e-12 Score=85.31 Aligned_cols=49 Identities=8% Similarity=0.009 Sum_probs=44.5
Q ss_pred CCccccccccccCCCceEEeCCCCccCccChhhhhccCccccccccccccCC
Q psy7279 73 AAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQHCPLCRNAVSVGS 124 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~~~ 124 (195)
+..|+||++.|. .+++++|||.||+.||..|+..+.+||+|+..+....
T Consensus 14 ~~~CpI~~~~m~---dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~ 62 (85)
T 2kr4_A 14 EFRDPLMDTLMT---DPVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTESM 62 (85)
T ss_dssp TTBCTTTCSBCS---SEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred heECcccCchhc---CCeECCCCCEECHHHHHHHHhcCCCCCCCcCCCChHh
Confidence 678999999999 8999999999999999999998889999999876543
No 45
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.16 E-value=1.7e-11 Score=77.12 Aligned_cols=47 Identities=32% Similarity=0.611 Sum_probs=39.9
Q ss_pred CCCCccccccccccCCCceEEeCCCCccCccChhhhhccCccccccccccccC
Q psy7279 71 APAAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQHCPLCRNAVSVG 123 (195)
Q Consensus 71 ~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 123 (195)
.....|+||++.+. .++.++|+|.||..||..| ...||+||..+...
T Consensus 4 ~~~~~C~IC~~~~~---~p~~l~CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~ 50 (56)
T 1bor_A 4 FQFLRCQQCQAEAK---CPKLLPCLHTLCSGCLEAS---GMQCPICQAPWPLG 50 (56)
T ss_dssp CCCSSCSSSCSSCB---CCSCSTTSCCSBTTTCSSS---SSSCSSCCSSSSCC
T ss_pred ccCCCceEeCCccC---CeEEcCCCCcccHHHHccC---CCCCCcCCcEeecC
Confidence 34678999999998 6788999999999999884 56899999988653
No 46
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.15 E-value=7.5e-12 Score=90.48 Aligned_cols=49 Identities=24% Similarity=0.611 Sum_probs=42.8
Q ss_pred CCCccccccccccCCCceEEeCCCCccCccChhhhhccCc-cccccccccccC
Q psy7279 72 PAAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQ-HCPLCRNAVSVG 123 (195)
Q Consensus 72 ~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~-~CP~Cr~~~~~~ 123 (195)
.+..|+||++.+. .++.++|+|.||..||..|+.... +||+||..+...
T Consensus 17 ~~~~C~IC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (118)
T 3hct_A 17 SKYECPICLMALR---EAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (118)
T ss_dssp GGGBCTTTCSBCS---SEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCcCChhhc---CeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHH
Confidence 3678999999998 778889999999999999998754 999999988553
No 47
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.15 E-value=9.7e-12 Score=87.57 Aligned_cols=49 Identities=8% Similarity=0.015 Sum_probs=44.7
Q ss_pred CCccccccccccCCCceEEeCCCCccCccChhhhhccCccccccccccccCC
Q psy7279 73 AAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQHCPLCRNAVSVGS 124 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~~~ 124 (195)
+..|+||++.|. +++.++|||.||+.||..|+..+.+||+||..+....
T Consensus 29 ~~~CpI~~~~m~---dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~ 77 (100)
T 2kre_A 29 EFRDPLMDTLMT---DPVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTESM 77 (100)
T ss_dssp TTBCTTTCSBCS---SEEEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCTTS
T ss_pred hhCCcCccCccc---CCeECCCCCEEchHHHHHHHHcCCCCCCCCCCCChhh
Confidence 678999999999 8999999999999999999998889999999886543
No 48
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.14 E-value=1.7e-11 Score=86.04 Aligned_cols=49 Identities=12% Similarity=0.053 Sum_probs=44.6
Q ss_pred CCccccccccccCCCceEEeCCC-CccCccChhhhhccCccccccccccccCC
Q psy7279 73 AAQCVICLAPFQPGEEVKELLCH-HKFHSECLEPWLRERQHCPLCRNAVSVGS 124 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l~C~-H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~~~ 124 (195)
+..|+||++.|. ++++++|| |.||+.||..|+..+.+||+||..+....
T Consensus 22 ~~~CpI~~~~m~---dPV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~~ 71 (98)
T 1wgm_A 22 EFLDPIMSTLMC---DPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQ 71 (98)
T ss_dssp TTBCTTTCSBCS---SEEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTT
T ss_pred hcCCcCcccccc---CCeECCCCCeEECHHHHHHHHHhCCCCCCCCCCCChhh
Confidence 678999999999 89999999 99999999999998889999999886543
No 49
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.14 E-value=1.6e-11 Score=81.62 Aligned_cols=49 Identities=20% Similarity=0.555 Sum_probs=40.2
Q ss_pred CCccccccccccCCCceEEeCCCCccCccChhhhhccC--ccccccccccccC
Q psy7279 73 AAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRER--QHCPLCRNAVSVG 123 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~--~~CP~Cr~~~~~~ 123 (195)
...|+||++.+..+. ....|+|.||..||.+|++.+ .+||+||..+...
T Consensus 15 i~~C~IC~~~i~~g~--~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~ 65 (74)
T 2ct0_A 15 VKICNICHSLLIQGQ--SCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 65 (74)
T ss_dssp SCBCSSSCCBCSSSE--ECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSC
T ss_pred CCcCcchhhHcccCC--ccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCC
Confidence 568999999998543 222699999999999999876 7999999887643
No 50
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.12 E-value=6.3e-12 Score=93.83 Aligned_cols=49 Identities=22% Similarity=0.461 Sum_probs=42.4
Q ss_pred CCCCccccccccccCCCceEEeCCCCccCccChhhhhccC-cccccccccccc
Q psy7279 71 APAAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRER-QHCPLCRNAVSV 122 (195)
Q Consensus 71 ~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~-~~CP~Cr~~~~~ 122 (195)
..+..|+||++.+. .++.++|||.||..||..|+... ..||+||..+..
T Consensus 29 ~~~~~C~IC~~~~~---~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 78 (141)
T 3knv_A 29 EAKYLCSACRNVLR---RPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIY 78 (141)
T ss_dssp CGGGBCTTTCSBCS---SEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCC
T ss_pred CcCcCCCCCChhhc---CcEECCCCCccCHHHHHHHHhcCCCCCCCCCCcccc
Confidence 33778999999998 77889999999999999999865 489999998643
No 51
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.12 E-value=1.6e-11 Score=88.25 Aligned_cols=49 Identities=27% Similarity=0.532 Sum_probs=43.3
Q ss_pred CCccccccccccCCCceEEeCCCCccCccChhhhhcc-CccccccccccccCC
Q psy7279 73 AAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRE-RQHCPLCRNAVSVGS 124 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~-~~~CP~Cr~~~~~~~ 124 (195)
+..|+||++.+. .++.++|||.||..||..|+.. ...||+||..+...+
T Consensus 23 ~~~C~IC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 72 (116)
T 1rmd_A 23 SISCQICEHILA---DPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTD 72 (116)
T ss_dssp HTBCTTTCSBCS---SEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGG
T ss_pred CCCCCCCCcHhc---CcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhh
Confidence 568999999998 7788999999999999999987 779999999886544
No 52
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.11 E-value=7.4e-11 Score=79.29 Aligned_cols=54 Identities=17% Similarity=0.512 Sum_probs=41.9
Q ss_pred CCCCccccccccccCCCceEEeC--CCCccCccChhhhhcc-CccccccccccccCCC
Q psy7279 71 APAAQCVICLAPFQPGEEVKELL--CHHKFHSECLEPWLRE-RQHCPLCRNAVSVGSI 125 (195)
Q Consensus 71 ~~~~~C~IC~~~~~~~~~~~~l~--C~H~Fh~~Ci~~wl~~-~~~CP~Cr~~~~~~~~ 125 (195)
..+..|+||++.+... .+..+| |||.||..|+..++.. ...||.||..+.....
T Consensus 9 ~~~~~CpICle~~~~~-d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~ 65 (78)
T 1e4u_A 9 EDPVECPLCMEPLEID-DINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPA 65 (78)
T ss_dssp CCCCBCTTTCCBCCTT-TTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSS
T ss_pred ccCCcCCccCccCccc-cccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCch
Confidence 3467899999988643 334444 9999999999998753 6789999999976554
No 53
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.09 E-value=1.2e-11 Score=90.27 Aligned_cols=53 Identities=28% Similarity=0.699 Sum_probs=44.7
Q ss_pred CCccccccccccC----CCceEEeCCCCccCccChhhhhccCccccccccccccCCC
Q psy7279 73 AAQCVICLAPFQP----GEEVKELLCHHKFHSECLEPWLRERQHCPLCRNAVSVGSI 125 (195)
Q Consensus 73 ~~~C~IC~~~~~~----~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~~~~ 125 (195)
...|+||++.+.. +...+.++|+|.||..||..|+..+++||+||..+...++
T Consensus 72 ~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 128 (133)
T 4ap4_A 72 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRY 128 (133)
T ss_dssp SCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCGGGE
T ss_pred CCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCChhcc
Confidence 6789999999873 2234788999999999999999999999999999876543
No 54
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.01 E-value=5.8e-11 Score=76.76 Aligned_cols=46 Identities=22% Similarity=0.477 Sum_probs=40.6
Q ss_pred CCccccccccccCCCceEEe--CCCCc-cCccChhhhhccCccccccccccc
Q psy7279 73 AAQCVICLAPFQPGEEVKEL--LCHHK-FHSECLEPWLRERQHCPLCRNAVS 121 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l--~C~H~-Fh~~Ci~~wl~~~~~CP~Cr~~~~ 121 (195)
+..|.||++... .++.+ ||||. ||..|+..|...+..||+||..+.
T Consensus 8 ~~~C~IC~~~~~---~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 8 IEPCVICQGRPK---NGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQ 56 (64)
T ss_dssp GSCCTTTSSSCS---CEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred cCCCCcCCCCCC---CEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence 568999999877 66666 99999 899999999988889999999874
No 55
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=99.01 E-value=7.9e-11 Score=78.24 Aligned_cols=43 Identities=23% Similarity=0.614 Sum_probs=38.7
Q ss_pred CCccccccccccCCCceEEeCCCCc-cCccChhhhhccCcccccccccccc
Q psy7279 73 AAQCVICLAPFQPGEEVKELLCHHK-FHSECLEPWLRERQHCPLCRNAVSV 122 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l~C~H~-Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 122 (195)
+..|+||++.+. .++.+||+|. ||..|+..| ..||+||..+..
T Consensus 24 ~~~C~iC~~~~~---~~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 24 EKLCKICMDRNI---AIVFVPCGHLVTCKQCAEAV----DKCPMCYTVITF 67 (74)
T ss_dssp HTBCTTTSSSBC---CEEEETTCCBCCCHHHHTTC----SBCTTTCCBCSE
T ss_pred CCCCCCCCCCCC---CEEEcCCCChhHHHHhhhcC----ccCCCcCcCccC
Confidence 568999999987 7888999999 999999998 789999998753
No 56
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=99.00 E-value=1.1e-10 Score=99.90 Aligned_cols=48 Identities=33% Similarity=0.699 Sum_probs=43.1
Q ss_pred CCccccccccccCCCceEEeCCCCccCccChhhhhc-cCccccccccccccC
Q psy7279 73 AAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLR-ERQHCPLCRNAVSVG 123 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~-~~~~CP~Cr~~~~~~ 123 (195)
...|+||++.+. .++.++|||.||..|+..|+. ....||+||..+...
T Consensus 332 ~~~C~ICle~~~---~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 332 FQLCKICAENDK---DVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGT 380 (389)
T ss_dssp SSBCTTTSSSBC---CEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEE
T ss_pred CCCCCccCcCCC---CeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCc
Confidence 468999999987 788999999999999999998 678999999988654
No 57
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.99 E-value=1.4e-10 Score=94.62 Aligned_cols=49 Identities=12% Similarity=0.106 Sum_probs=42.9
Q ss_pred CCccccccccccCCCceEEeCCCCccCccChhhhhcc-CccccccccccccCC
Q psy7279 73 AAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRE-RQHCPLCRNAVSVGS 124 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~-~~~CP~Cr~~~~~~~ 124 (195)
...|+||++.|. .+++++|||.||+.||..|+.. +.+||+||.++....
T Consensus 208 ~~~c~i~~~~~~---dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~ 257 (281)
T 2c2l_A 208 YLCGKISFELMR---EPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQ 257 (281)
T ss_dssp TTBCTTTCSBCS---SEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGG
T ss_pred ccCCcCcCCHhc---CCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhc
Confidence 778999999999 8999999999999999999976 445999999885443
No 58
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.96 E-value=2.2e-10 Score=79.51 Aligned_cols=47 Identities=17% Similarity=0.478 Sum_probs=40.5
Q ss_pred CCccccccccccCCCceEEeC-CCCccCccChhhhhccC------ccccc--cccc-ccc
Q psy7279 73 AAQCVICLAPFQPGEEVKELL-CHHKFHSECLEPWLRER------QHCPL--CRNA-VSV 122 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l~-C~H~Fh~~Ci~~wl~~~------~~CP~--Cr~~-~~~ 122 (195)
+..|+||++.|. ++++++ |||.||+.||..|+..+ .+||+ |+.. +..
T Consensus 7 ~~~CPI~~~~~~---dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~ 63 (94)
T 2yu4_A 7 GFTCPITKEEMK---KPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRK 63 (94)
T ss_dssp CCBCTTTCSBCS---SEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCG
T ss_pred EeECcCcCchhc---CCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCH
Confidence 678999999999 888996 99999999999999754 48999 9876 544
No 59
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.96 E-value=1.3e-10 Score=74.87 Aligned_cols=46 Identities=15% Similarity=0.431 Sum_probs=40.2
Q ss_pred CCccccccccccCCCceEEe--CCCCc-cCccChhhhhccCccccccccccc
Q psy7279 73 AAQCVICLAPFQPGEEVKEL--LCHHK-FHSECLEPWLRERQHCPLCRNAVS 121 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l--~C~H~-Fh~~Ci~~wl~~~~~CP~Cr~~~~ 121 (195)
+..|.||++... ....+ ||||. ||..|+..|.+.+..||+||..+.
T Consensus 7 ~~~C~IC~~~~~---~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 55 (63)
T 2vje_B 7 LKPCSLCEKRPR---DGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQ 55 (63)
T ss_dssp GSBCTTTSSSBS---CEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred CCCCcccCCcCC---CeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence 568999999876 56666 99998 999999999988889999999874
No 60
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.88 E-value=4e-10 Score=86.20 Aligned_cols=50 Identities=24% Similarity=0.613 Sum_probs=43.1
Q ss_pred CCCCccccccccccCCCceEEeCCCCccCccChhhhhccC-ccccccccccccC
Q psy7279 71 APAAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRER-QHCPLCRNAVSVG 123 (195)
Q Consensus 71 ~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~-~~CP~Cr~~~~~~ 123 (195)
..+..|+||++.+. .++.++|||.||..||..|+... ..||+||..+...
T Consensus 16 ~~~~~C~IC~~~~~---~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (170)
T 3hcs_A 16 ESKYECPICLMALR---EAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (170)
T ss_dssp CGGGBCTTTCSBCS---SEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCCChhhc---CcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchh
Confidence 34779999999998 77889999999999999999764 4999999987653
No 61
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.83 E-value=5.8e-10 Score=86.17 Aligned_cols=50 Identities=12% Similarity=0.119 Sum_probs=43.5
Q ss_pred CCccccccccccCCCceEEeCCCCccCccChhhhhcc-CccccccccccccCCC
Q psy7279 73 AAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRE-RQHCPLCRNAVSVGSI 125 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~-~~~CP~Cr~~~~~~~~ 125 (195)
...|+||++.|. .|++++|||.||+.||..|+.. ..+||+|+.++....+
T Consensus 106 ~f~CPI~~elm~---DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L 156 (179)
T 2f42_A 106 YLCGKISFELMR---EPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQL 156 (179)
T ss_dssp GGBCTTTCSBCS---SEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGC
T ss_pred hhcccCccccCC---CCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChhhC
Confidence 679999999999 8899999999999999999976 3579999988865433
No 62
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.81 E-value=3.1e-09 Score=69.41 Aligned_cols=44 Identities=30% Similarity=0.662 Sum_probs=38.0
Q ss_pred CCCccccccccccCCCceEEeCCCCc-cCccChhhhhccCcccccccccccc
Q psy7279 72 PAAQCVICLAPFQPGEEVKELLCHHK-FHSECLEPWLRERQHCPLCRNAVSV 122 (195)
Q Consensus 72 ~~~~C~IC~~~~~~~~~~~~l~C~H~-Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 122 (195)
.+..|.||++... .++.+||+|. ||..|+.. ...||+||..+..
T Consensus 14 ~~~~C~IC~~~~~---~~v~~pCgH~~~C~~C~~~----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 14 NSKDCVVCQNGTV---NWVLLPCRHTCLCDGCVKY----FQQCPMCRQFVQE 58 (68)
T ss_dssp CSSCCSSSSSSCC---CCEETTTTBCCSCTTHHHH----CSSCTTTCCCCCC
T ss_pred CCCCCCCcCcCCC---CEEEECCCChhhhHHHHhc----CCCCCCCCcchhc
Confidence 3678999999877 7888999999 99999984 4789999998854
No 63
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.80 E-value=1.7e-09 Score=90.75 Aligned_cols=52 Identities=33% Similarity=0.718 Sum_probs=39.8
Q ss_pred CCCccccccccccC-CCceE----EeCCCCccCccChhhhhccC-----------ccccccccccccC
Q psy7279 72 PAAQCVICLAPFQP-GEEVK----ELLCHHKFHSECLEPWLRER-----------QHCPLCRNAVSVG 123 (195)
Q Consensus 72 ~~~~C~IC~~~~~~-~~~~~----~l~C~H~Fh~~Ci~~wl~~~-----------~~CP~Cr~~~~~~ 123 (195)
....|+||++.+.. +.-+. ...|+|.||..||.+|++.. ..||.||.++...
T Consensus 307 ~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~s 374 (381)
T 3k1l_B 307 EELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTS 374 (381)
T ss_dssp SCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGG
T ss_pred CCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCcc
Confidence 46789999999886 32221 12599999999999999752 4699999988643
No 64
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.80 E-value=1.1e-09 Score=72.67 Aligned_cols=43 Identities=23% Similarity=0.619 Sum_probs=36.9
Q ss_pred CCccccccccccCCCceEEeCCCCc-cCccChhhhhccCcccccccccccc
Q psy7279 73 AAQCVICLAPFQPGEEVKELLCHHK-FHSECLEPWLRERQHCPLCRNAVSV 122 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l~C~H~-Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 122 (195)
+..|+||++.+. .++.+||+|. ||..|+.. ...||+||..+..
T Consensus 25 ~~~C~IC~~~~~---~~~~~pCgH~~~C~~C~~~----~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 25 EKLCKICMDRNI---AIVFVPCGHLVTCKQCAEA----VDKCPMCYTVITF 68 (75)
T ss_dssp HHSCSSSCSSCC---CBCCSSSCCCCBCHHHHHH----CSBCTTTCCBCCC
T ss_pred CCCCCcCCCCCC---CEEEecCCCHHHHHHHhhC----CCCCccCCceecC
Confidence 457999999987 7888999999 99999964 3789999998854
No 65
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.74 E-value=2.5e-09 Score=71.85 Aligned_cols=43 Identities=28% Similarity=0.603 Sum_probs=38.0
Q ss_pred CCccccccccccCCCceEEeCCCCc-cCccChhhhhccCcccccccccccc
Q psy7279 73 AAQCVICLAPFQPGEEVKELLCHHK-FHSECLEPWLRERQHCPLCRNAVSV 122 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l~C~H~-Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 122 (195)
+..|.||++.+. .++.+||||. ||..|+..| ..||+||..+..
T Consensus 18 ~~~C~IC~~~~~---~~v~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~ 61 (79)
T 2yho_A 18 AMLCMVCCEEEI---NSTFCPCGHTVCCESCAAQL----QSCPVCRSRVEH 61 (79)
T ss_dssp HTBCTTTSSSBC---CEEEETTCBCCBCHHHHTTC----SBCTTTCCBCCE
T ss_pred CCEeEEeCcccC---cEEEECCCCHHHHHHHHHhc----CcCCCCCchhhC
Confidence 458999999887 8889999999 999999887 389999998864
No 66
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.66 E-value=1.1e-08 Score=86.76 Aligned_cols=43 Identities=26% Similarity=0.656 Sum_probs=38.9
Q ss_pred CCccccccccccCCCceEEeCCCCc-cCccChhhhhccCcccccccccccc
Q psy7279 73 AAQCVICLAPFQPGEEVKELLCHHK-FHSECLEPWLRERQHCPLCRNAVSV 122 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l~C~H~-Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 122 (195)
+..|+||++.+. .++.+||||. ||..|+..| ..||+||..+..
T Consensus 295 ~~~C~IC~~~~~---~~v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 295 ERTCKVCMDKEV---SVVFIPCGHLVVCQECAPSL----RKCPICRGIIKG 338 (345)
T ss_dssp TCBCTTTSSSBC---CEEEETTCCEEECTTTGGGC----SBCTTTCCBCCE
T ss_pred CCCCCccCCcCC---ceEEcCCCChhHhHHHHhcC----CcCCCCCCCccC
Confidence 568999999988 8889999999 999999998 689999998853
No 67
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.65 E-value=7e-09 Score=66.06 Aligned_cols=48 Identities=23% Similarity=0.577 Sum_probs=37.3
Q ss_pred CCCccccccccccCCCceEEeCCC--C---ccCccChhhhhcc--Ccccccccccccc
Q psy7279 72 PAAQCVICLAPFQPGEEVKELLCH--H---KFHSECLEPWLRE--RQHCPLCRNAVSV 122 (195)
Q Consensus 72 ~~~~C~IC~~~~~~~~~~~~l~C~--H---~Fh~~Ci~~wl~~--~~~CP~Cr~~~~~ 122 (195)
....|.||++... ....+||. + .||..|+.+|+.. +.+||+|+..+..
T Consensus 5 ~~~~CrIC~~~~~---~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 5 DVPVCWICNEELG---NERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp SCCEETTTTEECS---CCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCCEeEEeecCCC---CceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 3668999999743 23467855 4 8999999999964 6789999998753
No 68
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.64 E-value=7e-09 Score=84.19 Aligned_cols=50 Identities=24% Similarity=0.590 Sum_probs=42.5
Q ss_pred CCccccccccccCCCceEEe-CCCCccCccChhhhhccC--ccccc--cccccccCCC
Q psy7279 73 AAQCVICLAPFQPGEEVKEL-LCHHKFHSECLEPWLRER--QHCPL--CRNAVSVGSI 125 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l-~C~H~Fh~~Ci~~wl~~~--~~CP~--Cr~~~~~~~~ 125 (195)
+..|+||++.|. .+++. .|||.||+.||..|+..+ ..||+ |+..+...++
T Consensus 181 el~CPIcl~~f~---DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL 235 (267)
T 3htk_C 181 ELTCPITCKPYE---APLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDF 235 (267)
T ss_dssp CSBCTTTSSBCS---SEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGE
T ss_pred eeECcCccCccc---CCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhC
Confidence 779999999998 67665 899999999999999763 57999 9998865554
No 69
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.61 E-value=7.8e-09 Score=66.05 Aligned_cols=52 Identities=15% Similarity=0.224 Sum_probs=45.1
Q ss_pred CCccccccccccCCCceEEe-CCCCccCccChhhhhccCccccccccccccCCCCC
Q psy7279 73 AAQCVICLAPFQPGEEVKEL-LCHHKFHSECLEPWLRERQHCPLCRNAVSVGSISS 127 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l-~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~~~~~~ 127 (195)
...|+||++.+. +++.+ +|||.|.+.||.+|+..+.+||+++.++...++..
T Consensus 3 ~~~CpIs~~~m~---dPV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~~Lip 55 (61)
T 2bay_A 3 HMLCAISGKVPR---RPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEIVE 55 (61)
T ss_dssp -CCCTTTCSCCS---SEEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGGCEE
T ss_pred eEEecCCCCCCC---CCEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChhhcEE
Confidence 357999999999 77888 89999999999999988888999999997766543
No 70
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.51 E-value=1.7e-08 Score=69.71 Aligned_cols=46 Identities=22% Similarity=0.677 Sum_probs=35.9
Q ss_pred CCccccccccccCCCceEEe-CCCCccCccChhhhhcc--------Cccccc--cccc
Q psy7279 73 AAQCVICLAPFQPGEEVKEL-LCHHKFHSECLEPWLRE--------RQHCPL--CRNA 119 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l-~C~H~Fh~~Ci~~wl~~--------~~~CP~--Cr~~ 119 (195)
...|+||++.+... ....+ +|+|.||..|+..++.. ...||. |+..
T Consensus 5 ~~~C~IC~~~~~~~-~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 5 SSGCKLCLGEYPVE-QMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp BCCCSSSCCCCBGG-GEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CcCCcccCcccccc-cceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 55899999998743 23333 69999999999999853 237999 9887
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.22 E-value=3.5e-07 Score=63.32 Aligned_cols=48 Identities=23% Similarity=0.469 Sum_probs=39.2
Q ss_pred ccccccccccCCCceEEeCCCCccCccChhhhhcc-CccccccccccccCC
Q psy7279 75 QCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRE-RQHCPLCRNAVSVGS 124 (195)
Q Consensus 75 ~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~-~~~CP~Cr~~~~~~~ 124 (195)
.|.+|--.+. ...+.+||+|+||..|+..|.++ .++||.|+.++....
T Consensus 3 fC~~C~~Pi~--iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~rVe 51 (101)
T 3vk6_A 3 FCDKCGLPIK--VYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQRIE 51 (101)
T ss_dssp BCTTTCSBCS--EEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSEEE
T ss_pred ecCccCCCeE--EEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeeeeE
Confidence 4788887776 46677899999999999999854 789999999886443
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.87 E-value=8.3e-06 Score=65.59 Aligned_cols=48 Identities=21% Similarity=0.585 Sum_probs=38.7
Q ss_pred CCccccccccccCCCceEEeC-CCCccCccChhhhhccC--ccccccccccccC
Q psy7279 73 AAQCVICLAPFQPGEEVKELL-CHHKFHSECLEPWLRER--QHCPLCRNAVSVG 123 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l~-C~H~Fh~~Ci~~wl~~~--~~CP~Cr~~~~~~ 123 (195)
-..|.||.+.+..+ ...+ |+|.||..|+..|++.+ ..||.|+...+..
T Consensus 180 i~~C~iC~~iv~~g---~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 180 VKICNICHSLLIQG---QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp CCBCTTTCSBCSSC---EECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred CCcCcchhhHHhCC---cccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 55899999998843 3343 99999999999999764 4899999876544
No 73
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=96.66 E-value=0.00095 Score=45.44 Aligned_cols=53 Identities=21% Similarity=0.441 Sum_probs=41.9
Q ss_pred CCCccccccccccCCCceEEeCCC-CccCccChhhhhccCccccccccccccCCCCCCC
Q psy7279 72 PAAQCVICLAPFQPGEEVKELLCH-HKFHSECLEPWLRERQHCPLCRNAVSVGSISSEN 129 (195)
Q Consensus 72 ~~~~C~IC~~~~~~~~~~~~l~C~-H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~~~~~~~~ 129 (195)
.-..|..|+-..+ ..+.|. |.+|..|+...+.....||+|+.+++.+-.....
T Consensus 27 G~~nCKsCWf~~k-----~LV~C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtkl~~~~~ 80 (99)
T 2ko5_A 27 GPQFCKSCWFENK-----GLVECNNHYLCLNCLTLLLSVSNRCPICKMPLPTKLRPSAA 80 (99)
T ss_dssp CCCCCCSSCSCCS-----SEEECSSCEEEHHHHHHTCSSSSEETTTTEECCCCSCTTTS
T ss_pred CcccChhhccccC-----CeeeecchhhHHHHHHHHHhhccCCcccCCcCCcceecCcC
Confidence 3667999997754 233565 9999999999999999999999999876554443
No 74
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=94.53 E-value=0.011 Score=40.46 Aligned_cols=33 Identities=18% Similarity=0.467 Sum_probs=25.2
Q ss_pred CCccccccccccCCCceEE--eCCCCccCccChhh-hh
Q psy7279 73 AAQCVICLAPFQPGEEVKE--LLCHHKFHSECLEP-WL 107 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~--l~C~H~Fh~~Ci~~-wl 107 (195)
+..|.||.+.+.. .++. +.|+|.||..|+.. |.
T Consensus 3 e~~C~~C~~~~~~--~av~~C~~C~~~~C~~Cl~~~h~ 38 (101)
T 2jun_A 3 KVLCQFCDQDPAQ--DAVKTCVTCEVSYCDECLKATHP 38 (101)
T ss_dssp CCBCTTCCSSSCC--BCCEEETTTTEEECHHHHHHHSC
T ss_pred CCCCcCCCCCCCC--CceEECCcCChHHhHHHCHHHhc
Confidence 5689999986432 3333 78999999999998 53
No 75
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=93.80 E-value=0.042 Score=34.46 Aligned_cols=47 Identities=28% Similarity=0.564 Sum_probs=33.1
Q ss_pred CCccccccccccCCCceEEe-CCCCccCccChhhhhc-----cCccccccccc
Q psy7279 73 AAQCVICLAPFQPGEEVKEL-LCHHKFHSECLEPWLR-----ERQHCPLCRNA 119 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l-~C~H~Fh~~Ci~~wl~-----~~~~CP~Cr~~ 119 (195)
...|+||...+..+...+.. .|...||..|+.--.. ..-.||.|+..
T Consensus 6 ~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 6 SGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp CCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 66799999887544445444 4999999999864322 24579999763
No 76
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=92.61 E-value=0.082 Score=33.60 Aligned_cols=43 Identities=26% Similarity=0.502 Sum_probs=31.1
Q ss_pred CCccccccccccCCCceEEe-CCCCccCccChhhhhcc----Cccccccccc
Q psy7279 73 AAQCVICLAPFQPGEEVKEL-LCHHKFHSECLEPWLRE----RQHCPLCRNA 119 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l-~C~H~Fh~~Ci~~wl~~----~~~CP~Cr~~ 119 (195)
+..|.||.+. .....- .|...||..|+...+.. .-.||.|+..
T Consensus 12 ~~~C~vC~~~----~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 12 GARCGVCGDG----TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp TCCCTTTSCC----TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCCcCCCCCC----CeEEECCCCCCceecccCCCccCcCCCCCEECccccCC
Confidence 5679999853 233333 49999999999877754 2369999754
No 77
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=89.92 E-value=0.18 Score=30.71 Aligned_cols=43 Identities=28% Similarity=0.751 Sum_probs=29.6
Q ss_pred CCCccccccccccCCCceEEe-CCCCccCccChhhhhcc----Ccccccccc
Q psy7279 72 PAAQCVICLAPFQPGEEVKEL-LCHHKFHSECLEPWLRE----RQHCPLCRN 118 (195)
Q Consensus 72 ~~~~C~IC~~~~~~~~~~~~l-~C~H~Fh~~Ci~~wl~~----~~~CP~Cr~ 118 (195)
.+..|.||... + ....- .|...||..|+..-+.. .-.||.|..
T Consensus 8 ~~~~C~vC~~~---g-~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 8 HEDFCSVCRKS---G-QLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SCCSCSSSCCS---S-CCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCccCCCC---C-eEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 36789999974 2 33333 49999999999865433 235888854
No 78
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=89.57 E-value=0.08 Score=34.25 Aligned_cols=49 Identities=22% Similarity=0.451 Sum_probs=33.1
Q ss_pred CCCccccccccccCCCceEEe-CCCCccCccChhhhhcc----Cccccccccccc
Q psy7279 72 PAAQCVICLAPFQPGEEVKEL-LCHHKFHSECLEPWLRE----RQHCPLCRNAVS 121 (195)
Q Consensus 72 ~~~~C~IC~~~~~~~~~~~~l-~C~H~Fh~~Ci~~wl~~----~~~CP~Cr~~~~ 121 (195)
....|.||..... ++..+.. .|...||..|+..-... .-.||.|+..+.
T Consensus 17 ~~~~C~~C~~~~~-~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 17 QIWICPGCNKPDD-GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp EEECBTTTTBCCS-SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CCcCCCCCCCCCC-CCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 3567999988643 3234333 49999999998754432 346999987654
No 79
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=89.31 E-value=0.26 Score=30.57 Aligned_cols=45 Identities=31% Similarity=0.608 Sum_probs=29.9
Q ss_pred CCCccccccccccCCCceEEeCCCCccCccChhhhhcc----Cccccccccc
Q psy7279 72 PAAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRE----RQHCPLCRNA 119 (195)
Q Consensus 72 ~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~----~~~CP~Cr~~ 119 (195)
.+..|.||.+. ++-+.--.|...||..|+..-+.. .-.||.|+..
T Consensus 8 ~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 8 HMEFCRVCKDG---GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp SCSSCTTTCCC---SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred CCCcCCCCCCC---CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCc
Confidence 36789999863 222222248999999999864433 2369999654
No 80
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=88.55 E-value=0.26 Score=32.75 Aligned_cols=33 Identities=21% Similarity=0.532 Sum_probs=22.5
Q ss_pred CCccccccccccCCCceEEeCCCCccCccChhhh
Q psy7279 73 AAQCVICLAPFQPGEEVKELLCHHKFHSECLEPW 106 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~w 106 (195)
|..|.||-- +..++....--|+.+||..|+.+.
T Consensus 15 D~~C~VC~~-~t~~~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 15 DEMCDVCEV-WTAESLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp SCCCTTTCC-CCSSCCSSCSSSSSCCCHHHHHHH
T ss_pred CcccCcccc-ccccceeccccccccccHhhcccc
Confidence 778999974 232222222238999999999986
No 81
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=88.03 E-value=0.27 Score=37.56 Aligned_cols=49 Identities=18% Similarity=0.369 Sum_probs=34.2
Q ss_pred CCccccccccccCCCc---eEEeC-CCCccCccChhhh------hc-----cCccccccccccc
Q psy7279 73 AAQCVICLAPFQPGEE---VKELL-CHHKFHSECLEPW------LR-----ERQHCPLCRNAVS 121 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~---~~~l~-C~H~Fh~~Ci~~w------l~-----~~~~CP~Cr~~~~ 121 (195)
+..|+||...+..++. .+... |...||..|..-- +. ..-.||.|+..-+
T Consensus 2 G~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~ 65 (183)
T 3lqh_A 2 GNFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHP 65 (183)
T ss_dssp CCBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSS
T ss_pred cCcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCC
Confidence 3469999999886652 44444 9999999997431 11 1457999987543
No 82
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=87.96 E-value=0.13 Score=35.72 Aligned_cols=48 Identities=21% Similarity=0.392 Sum_probs=33.6
Q ss_pred CCccccccccccCCCceEEe--CCCCccCccChhhhh----------ccCcccccccccc
Q psy7279 73 AAQCVICLAPFQPGEEVKEL--LCHHKFHSECLEPWL----------RERQHCPLCRNAV 120 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l--~C~H~Fh~~Ci~~wl----------~~~~~CP~Cr~~~ 120 (195)
...|.||...+......+.. .|...||..|+.--. ...-.||.|+...
T Consensus 3 ~~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~ 62 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTK 62 (105)
T ss_dssp CCBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTT
T ss_pred cCCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcC
Confidence 45799999998655455555 489999999975221 0244799998753
No 83
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=87.86 E-value=0.24 Score=30.61 Aligned_cols=47 Identities=30% Similarity=0.561 Sum_probs=32.8
Q ss_pred CCCcccccccc-ccCCCceEEeCCCCccCccChhhhhc-cCc---ccccccc
Q psy7279 72 PAAQCVICLAP-FQPGEEVKELLCHHKFHSECLEPWLR-ERQ---HCPLCRN 118 (195)
Q Consensus 72 ~~~~C~IC~~~-~~~~~~~~~l~C~H~Fh~~Ci~~wl~-~~~---~CP~Cr~ 118 (195)
+...|.||+.. |.++---...-|.-.||..|-..|-. .++ .|-+||+
T Consensus 8 d~~~C~iC~KTKFADG~Gh~C~yCk~r~CaRCGg~v~lr~~k~~WvC~lC~k 59 (62)
T 2a20_A 8 DAPTCGICHKTKFADGCGHNCSYCQTKFCARCGGRVSLRSNKVMWVCNLCRK 59 (62)
T ss_dssp CCCCCSSSSCSCCCSSCCEEBTTTCCEECTTSEEEEESSTTCEEEEEHHHHH
T ss_pred CcchhhhhccceeccCCCccccccCCeeecccCCEeeecCCeEEEEehhhhh
Confidence 36789999984 55443333345999999999888753 333 4888875
No 84
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=87.49 E-value=1 Score=30.11 Aligned_cols=44 Identities=32% Similarity=0.751 Sum_probs=31.1
Q ss_pred CCCccccccccccCCCceEEe-CCCCccCccChhhhhcc----Cccccccccc
Q psy7279 72 PAAQCVICLAPFQPGEEVKEL-LCHHKFHSECLEPWLRE----RQHCPLCRNA 119 (195)
Q Consensus 72 ~~~~C~IC~~~~~~~~~~~~l-~C~H~Fh~~Ci~~wl~~----~~~CP~Cr~~ 119 (195)
.+..|.||... + ..... .|...||..|+..=+.. .-.||.|+..
T Consensus 24 n~~~C~vC~~~---g-~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 24 SATICRVCQKP---G-DLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSCCSSSCSS---S-CCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCcCcCcCCC---C-CEEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 36789999974 2 33333 48899999999775543 3369999764
No 85
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=87.41 E-value=0.23 Score=29.47 Aligned_cols=43 Identities=30% Similarity=0.674 Sum_probs=27.7
Q ss_pred ccccccccccCCCceEEe-CCCCccCccChhhhhcc----Ccccccccc
Q psy7279 75 QCVICLAPFQPGEEVKEL-LCHHKFHSECLEPWLRE----RQHCPLCRN 118 (195)
Q Consensus 75 ~C~IC~~~~~~~~~~~~l-~C~H~Fh~~Ci~~wl~~----~~~CP~Cr~ 118 (195)
.|.||...-..+ ....- .|...||..|+..=+.. .-.||.|+.
T Consensus 2 ~C~vC~~~~~~~-~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDD-KLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCS-CCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCC-CEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 588998753322 33333 49999999999754432 235999864
No 86
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=87.16 E-value=0.26 Score=38.15 Aligned_cols=45 Identities=24% Similarity=0.522 Sum_probs=31.5
Q ss_pred CCCccccccccccCCCceEEe-CCCCccCccChhhhhcc----Ccccccccccc
Q psy7279 72 PAAQCVICLAPFQPGEEVKEL-LCHHKFHSECLEPWLRE----RQHCPLCRNAV 120 (195)
Q Consensus 72 ~~~~C~IC~~~~~~~~~~~~l-~C~H~Fh~~Ci~~wl~~----~~~CP~Cr~~~ 120 (195)
.+..|.+|... ...... .|...||..|+..-+.. .-.||.|+..-
T Consensus 6 ~~~~C~~C~~~----g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 6 NEDWCAVCQNG----GDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp SCSSBTTTCCC----EEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCC----CceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 46789999854 133333 38999999999776543 23699998654
No 87
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=86.93 E-value=0.34 Score=36.69 Aligned_cols=45 Identities=29% Similarity=0.632 Sum_probs=31.7
Q ss_pred CCccccccccccCCCceEEe-CCCCccCccChhhhhcc----Cccccccccccc
Q psy7279 73 AAQCVICLAPFQPGEEVKEL-LCHHKFHSECLEPWLRE----RQHCPLCRNAVS 121 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l-~C~H~Fh~~Ci~~wl~~----~~~CP~Cr~~~~ 121 (195)
+..|.||... + ..... .|...||..|+..-+.. .-.||.|+..-.
T Consensus 4 ~~~C~~C~~~---g-~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~~ 53 (184)
T 3o36_A 4 EDWCAVCQNG---G-ELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLSK 53 (184)
T ss_dssp CSSCTTTCCC---S-SCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSS
T ss_pred CCccccCCCC---C-eeeecCCCCcccCccccCCCCCCCCCCCEECccccCccc
Confidence 5679999854 2 33333 49999999999776543 236999987543
No 88
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=86.81 E-value=0.5 Score=29.52 Aligned_cols=49 Identities=24% Similarity=0.584 Sum_probs=32.3
Q ss_pred CCCccccccccccCC-CceEEe-CCCCccCccChhhhhc-------cCcccccccccc
Q psy7279 72 PAAQCVICLAPFQPG-EEVKEL-LCHHKFHSECLEPWLR-------ERQHCPLCRNAV 120 (195)
Q Consensus 72 ~~~~C~IC~~~~~~~-~~~~~l-~C~H~Fh~~Ci~~wl~-------~~~~CP~Cr~~~ 120 (195)
.+..|.||....... .....- .|...||..|+..-+. ..-.|+.|....
T Consensus 5 ~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~ 62 (66)
T 2yt5_A 5 SSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFAT 62 (66)
T ss_dssp CCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTT
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCcc
Confidence 367899999864322 233333 4999999999986442 234699997643
No 89
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=86.39 E-value=0.14 Score=32.40 Aligned_cols=32 Identities=22% Similarity=0.468 Sum_probs=24.5
Q ss_pred CCccccccccccCCCceEEe--CCCCccCccChh
Q psy7279 73 AAQCVICLAPFQPGEEVKEL--LCHHKFHSECLE 104 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l--~C~H~Fh~~Ci~ 104 (195)
...|.+|...+..+...+.. .|...||..|+.
T Consensus 8 ~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvg 41 (65)
T 2vpb_A 8 VYPCGICTNEVNDDQDAILCEASCQKWFHRICTG 41 (65)
T ss_dssp -CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHT
T ss_pred cCcCccCCCccCCCCCeEecccCccccCchhccC
Confidence 56899999988765555554 599999999974
No 90
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=86.27 E-value=0.46 Score=28.37 Aligned_cols=43 Identities=21% Similarity=0.356 Sum_probs=28.4
Q ss_pred ccccccccccCCCceEEe--CCCCccCccChhhhh----ccCccccccc
Q psy7279 75 QCVICLAPFQPGEEVKEL--LCHHKFHSECLEPWL----RERQHCPLCR 117 (195)
Q Consensus 75 ~C~IC~~~~~~~~~~~~l--~C~H~Fh~~Ci~~wl----~~~~~CP~Cr 117 (195)
.|.||...+..+...+.- .|...||..|+.--. ..+-.||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 477888887644445444 388899999975322 2355788885
No 91
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=85.63 E-value=0.7 Score=31.95 Aligned_cols=46 Identities=24% Similarity=0.595 Sum_probs=29.4
Q ss_pred CCCccccccccccCCCceEEeCCCCccCccChhhhhcc----Cccccccc
Q psy7279 72 PAAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRE----RQHCPLCR 117 (195)
Q Consensus 72 ~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~----~~~CP~Cr 117 (195)
.+..|.||.+.-...+-+.--.|...||..|+...+.. .-.||.|+
T Consensus 6 ~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 6 SGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence 37789999886332112333359999999999876542 22466654
No 92
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=85.50 E-value=0.35 Score=29.96 Aligned_cols=42 Identities=26% Similarity=0.714 Sum_probs=29.8
Q ss_pred CCccccccccccCCCceEEe-CCCCccCccChhhhhcc----Ccccccccc
Q psy7279 73 AAQCVICLAPFQPGEEVKEL-LCHHKFHSECLEPWLRE----RQHCPLCRN 118 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l-~C~H~Fh~~Ci~~wl~~----~~~CP~Cr~ 118 (195)
+..|.||... .....- .|...||..|+..-+.. .-.||.|+.
T Consensus 11 ~~~C~vC~~~----g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 11 QDYCEVCQQG----GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp CSSCTTTSCC----SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCccCCCC----CcEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 6789999873 233333 48999999999875432 336999965
No 93
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=85.46 E-value=0.56 Score=29.45 Aligned_cols=44 Identities=36% Similarity=0.724 Sum_probs=30.5
Q ss_pred CCCccccccccccCCCceEEe-CCCCccCccChhhhhcc----Cccccccccc
Q psy7279 72 PAAQCVICLAPFQPGEEVKEL-LCHHKFHSECLEPWLRE----RQHCPLCRNA 119 (195)
Q Consensus 72 ~~~~C~IC~~~~~~~~~~~~l-~C~H~Fh~~Ci~~wl~~----~~~CP~Cr~~ 119 (195)
.+..|.||.+. + ..... .|...||..|+..-+.. .-.||.|...
T Consensus 7 ~~~~C~vC~~~---g-~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 7 NEDECAVCRDG---G-ELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp CCCSBSSSSCC---S-SCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred CCCCCccCCCC---C-CEEEcCCCChhhcccccCCCcCcCCCCCeECccccCc
Confidence 36789999974 2 33333 49999999999864433 3369999653
No 94
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=85.22 E-value=1.8 Score=29.06 Aligned_cols=45 Identities=27% Similarity=0.567 Sum_probs=27.2
Q ss_pred CCccccccccccCCCceEEe-C--CC-CccCccChhhhh--ccCcccccccccc
Q psy7279 73 AAQCVICLAPFQPGEEVKEL-L--CH-HKFHSECLEPWL--RERQHCPLCRNAV 120 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l-~--C~-H~Fh~~Ci~~wl--~~~~~CP~Cr~~~ 120 (195)
...| ||..... + ..+.. . |. ..||..|+.--- ..+-.||.|+...
T Consensus 36 ~~yC-iC~~~~~-g-~MI~CD~~dC~~~WfH~~CVgl~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 36 PTYC-LCHQVSY-G-EMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp CBCS-TTCCBCC-S-CCCCCSCSSCSCCCCCSTTTTCSSCCCSSCCCTTTCCCC
T ss_pred CcEE-ECCCCCC-C-CEeEecCCCCCCCCEecccCCcCcCCCCCEECcCccCcC
Confidence 5567 9988643 2 23222 3 55 689999996211 1234799997643
No 95
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=85.17 E-value=0.32 Score=46.03 Aligned_cols=50 Identities=8% Similarity=0.082 Sum_probs=43.9
Q ss_pred CCccccccccccCCCceEEeCCC-CccCccChhhhhccCccccccccccccCCC
Q psy7279 73 AAQCVICLAPFQPGEEVKELLCH-HKFHSECLEPWLRERQHCPLCRNAVSVGSI 125 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l~C~-H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~~~~ 125 (195)
...|+|-++.+. +|+++|-| +.|-+.+|.+|+..+.+||+=|.++.....
T Consensus 891 ~F~cPIs~~lM~---DPVilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~~l 941 (968)
T 3m62_A 891 EFLDPLMYTIMK---DPVILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKLEDV 941 (968)
T ss_dssp GGBCTTTCSBCS---SEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGC
T ss_pred HhCCcchhhHHh---CCeEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCCcccc
Confidence 668999999999 89999987 689999999999999999999998865443
No 96
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=84.82 E-value=0.29 Score=30.15 Aligned_cols=45 Identities=27% Similarity=0.721 Sum_probs=31.3
Q ss_pred CCccccccccccCCCceEEe-CCCCccCccChhhhhcc----Cccccccccccc
Q psy7279 73 AAQCVICLAPFQPGEEVKEL-LCHHKFHSECLEPWLRE----RQHCPLCRNAVS 121 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l-~C~H~Fh~~Ci~~wl~~----~~~CP~Cr~~~~ 121 (195)
+..|.||... + ....- .|...||..|+..-+.. .-.||.|.....
T Consensus 5 ~~~C~vC~~~---g-~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~ 54 (60)
T 2puy_A 5 EDFCSVCRKS---G-QLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQML 54 (60)
T ss_dssp CSSCTTTCCC---S-SCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHHH
T ss_pred CCCCcCCCCC---C-cEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChhh
Confidence 6789999874 2 33333 49999999999864433 236999976543
No 97
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=83.15 E-value=0.46 Score=32.01 Aligned_cols=46 Identities=28% Similarity=0.501 Sum_probs=30.9
Q ss_pred CCccccccccccCCCceEEe-CCCCccCccChhhhhcc----Cccccccccc
Q psy7279 73 AAQCVICLAPFQPGEEVKEL-LCHHKFHSECLEPWLRE----RQHCPLCRNA 119 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l-~C~H~Fh~~Ci~~wl~~----~~~CP~Cr~~ 119 (195)
+..|.||...-.. +..+.. .|...||..|+..=+.. .-.||.|...
T Consensus 16 ~~~C~vC~~~~~~-~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 16 SYICQVCSRGDED-DKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCSSSCCSGGG-GGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred CCCCccCCCcCCC-CCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 5679999976321 123333 49999999999754432 2369999764
No 98
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=81.47 E-value=1.7 Score=28.17 Aligned_cols=47 Identities=26% Similarity=0.608 Sum_probs=31.4
Q ss_pred CCccccccccccCCCceEEeC-CCCccCccChhhhhc-----cCcccccccccc
Q psy7279 73 AAQCVICLAPFQPGEEVKELL-CHHKFHSECLEPWLR-----ERQHCPLCRNAV 120 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l~-C~H~Fh~~Ci~~wl~-----~~~~CP~Cr~~~ 120 (195)
...| ||...+..+...+... |...||..|+.--.. ..-.||.|+...
T Consensus 12 ~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 12 PVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred ccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 4467 8988764334455444 999999999853221 245799998754
No 99
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=81.37 E-value=1.2 Score=29.62 Aligned_cols=51 Identities=20% Similarity=0.415 Sum_probs=35.1
Q ss_pred CCccccccccccCCCceEE-eCCCCccCccChhhhhc-------cCccccccccccccC
Q psy7279 73 AAQCVICLAPFQPGEEVKE-LLCHHKFHSECLEPWLR-------ERQHCPLCRNAVSVG 123 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~-l~C~H~Fh~~Ci~~wl~-------~~~~CP~Cr~~~~~~ 123 (195)
...|.+|...|..-..--. -.||.+||..|....+. ....|-.|...+...
T Consensus 9 ~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~~~lp~~g~~~~RVC~~C~~~l~~~ 67 (88)
T 1wfk_A 9 ESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSALVPRAGNTQQKVCKQCHTILTRG 67 (88)
T ss_dssp CSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEEEEETTTTSEEEEECHHHHHHHHHC
T ss_pred CCCCcCcCCcccCccccccCCCCCCEEChhHcCCceeccccCCCcCEECHHHHHHHHhc
Confidence 4579999999874322222 35999999999876431 234699997776543
No 100
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=81.16 E-value=1.2 Score=29.58 Aligned_cols=49 Identities=22% Similarity=0.570 Sum_probs=33.2
Q ss_pred CCccccccccccCC-CceEEe-CCCCccCccChhhhhc--------cCccccccccccc
Q psy7279 73 AAQCVICLAPFQPG-EEVKEL-LCHHKFHSECLEPWLR--------ERQHCPLCRNAVS 121 (195)
Q Consensus 73 ~~~C~IC~~~~~~~-~~~~~l-~C~H~Fh~~Ci~~wl~--------~~~~CP~Cr~~~~ 121 (195)
+..|.||...-... +..... .|...||..|+..-+. ..-.|+.|+....
T Consensus 16 ~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~ 74 (88)
T 1wev_A 16 GLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMK 74 (88)
T ss_dssp CCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHC
T ss_pred CCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhh
Confidence 56899999863321 233333 4999999999986553 1346999987654
No 101
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=80.55 E-value=0.77 Score=30.27 Aligned_cols=49 Identities=18% Similarity=0.317 Sum_probs=33.0
Q ss_pred CCccccccccccCCCceEE-eCCCCccCccChhhhhc--------cCccccccccccc
Q psy7279 73 AAQCVICLAPFQPGEEVKE-LLCHHKFHSECLEPWLR--------ERQHCPLCRNAVS 121 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~-l~C~H~Fh~~Ci~~wl~--------~~~~CP~Cr~~~~ 121 (195)
...|.+|...|..-..--. -.||++||..|...... ....|-.|...+.
T Consensus 21 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~~~lp~~~~~~~~RVC~~C~~~l~ 78 (84)
T 1z2q_A 21 APACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHRAAIPMRGITEPERVCDACYLALR 78 (84)
T ss_dssp CCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCEEEETTTTEEEEEECCHHHHHHHH
T ss_pred CCCCcCcCCccccchhcccccCCCcEEChHHhCCeEeccCCCCCCCCEECHHHHHHHh
Confidence 5589999999874333223 35999999999866431 1346877766554
No 102
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=80.02 E-value=1.1 Score=31.18 Aligned_cols=44 Identities=27% Similarity=0.591 Sum_probs=28.4
Q ss_pred ccccccccccCCCceEEe-CCCCccCccChhhhhcc----Ccccccccc
Q psy7279 75 QCVICLAPFQPGEEVKEL-LCHHKFHSECLEPWLRE----RQHCPLCRN 118 (195)
Q Consensus 75 ~C~IC~~~~~~~~~~~~l-~C~H~Fh~~Ci~~wl~~----~~~CP~Cr~ 118 (195)
.|.||.+.-...+....- .|...||..|+..-+.. .-.||.|+.
T Consensus 63 ~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 63 TCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred ccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 688888653222233333 49999999999765543 236999974
No 103
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=79.84 E-value=0.97 Score=29.72 Aligned_cols=36 Identities=19% Similarity=0.365 Sum_probs=27.5
Q ss_pred CCccccccccccCCCceEEeC--CCCccCccChhhhhcc
Q psy7279 73 AAQCVICLAPFQPGEEVKELL--CHHKFHSECLEPWLRE 109 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l~--C~H~Fh~~Ci~~wl~~ 109 (195)
...|.+|.+.+++. ..+..| =.|.||..|-+..++.
T Consensus 15 ~l~CtlC~erLEdt-HFVQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 15 PLCCTICHERLEDT-HFVQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp SCCCSSSCSCCSST-TSEECSSCSSCEECHHHHHHHHHH
T ss_pred eeEeecchhhhccC-ceeeCCCccCCeeeccccHHHHHh
Confidence 56899999998844 444444 4699999999888764
No 104
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=79.72 E-value=3.3 Score=27.68 Aligned_cols=50 Identities=20% Similarity=0.359 Sum_probs=34.2
Q ss_pred CCccccccccccCCC--ce-EEe-CCCCccCccChhhhh-ccCcccccccccccc
Q psy7279 73 AAQCVICLAPFQPGE--EV-KEL-LCHHKFHSECLEPWL-RERQHCPLCRNAVSV 122 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~--~~-~~l-~C~H~Fh~~Ci~~wl-~~~~~CP~Cr~~~~~ 122 (195)
...|.||-+.+.... ++ +.. .|+--.|+.|..--. ..++.||.|++.+..
T Consensus 16 ~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYkr 70 (93)
T 1weo_A 16 GQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKR 70 (93)
T ss_dssp SCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCC
T ss_pred CCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCcccc
Confidence 458999999865322 12 222 377778888876544 347889999998863
No 105
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=79.24 E-value=0.69 Score=29.50 Aligned_cols=47 Identities=19% Similarity=0.317 Sum_probs=30.8
Q ss_pred CCccccccccccCCCceEEe-CCCCccCccChhhhh----ccCcccccccccc
Q psy7279 73 AAQCVICLAPFQPGEEVKEL-LCHHKFHSECLEPWL----RERQHCPLCRNAV 120 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l-~C~H~Fh~~Ci~~wl----~~~~~CP~Cr~~~ 120 (195)
...| ||......+...+.. .|...||..|+.--. ...-.||.|+..-
T Consensus 16 ~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~~ 67 (72)
T 1wee_A 16 KVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIELS 67 (72)
T ss_dssp EECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHHC
T ss_pred ceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCCC
Confidence 4568 798875544344444 399999999986432 2245799997643
No 106
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=78.60 E-value=0.93 Score=34.59 Aligned_cols=45 Identities=33% Similarity=0.693 Sum_probs=30.2
Q ss_pred CCccccccccccCCCceEEeCCCCccCccChhhhhcc----Ccccccccccc
Q psy7279 73 AAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRE----RQHCPLCRNAV 120 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~----~~~CP~Cr~~~ 120 (195)
+..|.+|.+. ++-...-.|...||..|+..=+.. .-.||.|+..-
T Consensus 2 ~~~C~~C~~~---g~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~~ 50 (189)
T 2ro1_A 2 ATICRVCQKP---GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLP 50 (189)
T ss_dssp CCCBTTTCCC---SSCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCSC
T ss_pred CCcCccCCCC---CceeECCCCCchhccccCCCCcccCCCCCCCCcCccCCC
Confidence 4579999864 222222248899999999764432 33699998653
No 107
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=78.23 E-value=0.68 Score=32.89 Aligned_cols=48 Identities=23% Similarity=0.405 Sum_probs=32.1
Q ss_pred CCccccccccccCCCc-eEEeCCCCccCccChhhhhccCcccccccccc
Q psy7279 73 AAQCVICLAPFQPGEE-VKELLCHHKFHSECLEPWLRERQHCPLCRNAV 120 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~-~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~ 120 (195)
...|..|...|..-.. .-...||.+||..|..........|-.|...+
T Consensus 19 ~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~~~~ 67 (120)
T 1y02_A 19 EPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQRFR 67 (120)
T ss_dssp -CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHHHHH
T ss_pred cCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHHHHH
Confidence 4579999998874222 23335999999999887766677899996654
No 108
>2ekf_A Ancient ubiquitous protein 1; CUE, ubiquitin ligase complex, ubiquitin-conjugating enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=76.62 E-value=2.3 Score=26.40 Aligned_cols=23 Identities=17% Similarity=0.182 Sum_probs=19.1
Q ss_pred ccccCCHHHHHHHHHHhCCcccc
Q psy7279 151 AEEFSDAEAFAEALVEAFPQVFP 173 (195)
Q Consensus 151 ~~~~s~~~~~~~~~~~~~p~~~~ 173 (195)
....+++++|++++++|||++..
T Consensus 7 ~~~~~ql~~mv~~V~~mfP~vp~ 29 (61)
T 2ekf_A 7 GSPDVQLATLAQRVKEVLPHVPL 29 (61)
T ss_dssp CCCCCCHHHHHHHHHHHCSSSCH
T ss_pred CCccHHHHHHHHHHHHHcCCCCH
Confidence 33567899999999999999853
No 109
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=76.50 E-value=0.5 Score=35.35 Aligned_cols=47 Identities=21% Similarity=0.508 Sum_probs=31.7
Q ss_pred CCccccccccccCCCceEEeC-CCCccCccChhhhh-----ccCcccccccccc
Q psy7279 73 AAQCVICLAPFQPGEEVKELL-CHHKFHSECLEPWL-----RERQHCPLCRNAV 120 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l~-C~H~Fh~~Ci~~wl-----~~~~~CP~Cr~~~ 120 (195)
...| ||......+...+... |...||..|+.--. ...-.||.|+..-
T Consensus 8 ~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~~ 60 (174)
T 2ri7_A 8 KLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQSTE 60 (174)
T ss_dssp CEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHHH
T ss_pred CcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcchh
Confidence 5678 9998765333455443 99999999985322 1244799998643
No 110
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=75.95 E-value=1.1 Score=30.54 Aligned_cols=43 Identities=21% Similarity=0.404 Sum_probs=27.6
Q ss_pred CccccccccccCCCceEEe-CCCCccCccChhhhhcc---Ccccccccc
Q psy7279 74 AQCVICLAPFQPGEEVKEL-LCHHKFHSECLEPWLRE---RQHCPLCRN 118 (195)
Q Consensus 74 ~~C~IC~~~~~~~~~~~~l-~C~H~Fh~~Ci~~wl~~---~~~CP~Cr~ 118 (195)
..| ||......+ ..+.. .|...||..|+..-... .-.||.|+.
T Consensus 29 vrC-iC~~~~~~~-~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 29 TRC-ICGFTHDDG-YMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp CCC-TTSCCSCSS-CEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred EEe-ECCCccCCC-cEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 457 787765433 33333 49999999998653322 347999963
No 111
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=75.87 E-value=1.2 Score=28.91 Aligned_cols=45 Identities=27% Similarity=0.627 Sum_probs=28.4
Q ss_pred CCccccccccccCCCceEEe-CCCCccCccChhhhhcc-----Ccccccccc
Q psy7279 73 AAQCVICLAPFQPGEEVKEL-LCHHKFHSECLEPWLRE-----RQHCPLCRN 118 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l-~C~H~Fh~~Ci~~wl~~-----~~~CP~Cr~ 118 (195)
+..|.||...-.. .....- .|...||..|+..-+.. .-.||.|..
T Consensus 26 ~c~C~vC~~~~~~-~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 26 SCSCRVCGGKHEP-NMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSSCSSSCCCCCS-TTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCCCcCcCCcCCC-CCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 3478899864222 233333 49999999999854432 236888854
No 112
>2ejs_A Autocrine motility factor receptor, isoform 2; CUE, ubiquitin ligase complex, ubiquitin-conjugating enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=75.60 E-value=2.1 Score=26.32 Aligned_cols=23 Identities=35% Similarity=0.364 Sum_probs=19.2
Q ss_pred ccccCCHHHHHHHHHHhCCcccc
Q psy7279 151 AEEFSDAEAFAEALVEAFPQVFP 173 (195)
Q Consensus 151 ~~~~s~~~~~~~~~~~~~p~~~~ 173 (195)
....+++++|++++++|||++..
T Consensus 7 ~~~~~q~~~mv~~V~~mfP~vp~ 29 (58)
T 2ejs_A 7 GASNSQLNAMAHQIQEMFPQVPY 29 (58)
T ss_dssp SCCCCHHHHHHHHHHHHCCSSCH
T ss_pred CcchHHHHHHHHHHHHHcCCCCH
Confidence 34567899999999999999853
No 113
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=74.88 E-value=1.2 Score=28.67 Aligned_cols=46 Identities=28% Similarity=0.519 Sum_probs=30.2
Q ss_pred CCccccccccccCCCceEEe-CCCCccCccChhhhh---------ccCcccccccccc
Q psy7279 73 AAQCVICLAPFQPGEEVKEL-LCHHKFHSECLEPWL---------RERQHCPLCRNAV 120 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l-~C~H~Fh~~Ci~~wl---------~~~~~CP~Cr~~~ 120 (195)
...| ||..... +...+.. .|...||..|+.--. ...-.||.|+..-
T Consensus 16 ~~~C-~C~~~~~-~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~ 71 (76)
T 1wem_A 16 ALYC-ICRQPHN-NRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILS 71 (76)
T ss_dssp CCCS-TTCCCCC-SSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHS
T ss_pred CCEE-ECCCccC-CCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCcc
Confidence 4567 8988765 2234443 499999999985321 1356799997653
No 114
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=74.60 E-value=2.2 Score=26.91 Aligned_cols=44 Identities=32% Similarity=0.708 Sum_probs=29.0
Q ss_pred CCccccccccccCCCceEEe-CCCCccCccChhhhhc---cCcccccccc
Q psy7279 73 AAQCVICLAPFQPGEEVKEL-LCHHKFHSECLEPWLR---ERQHCPLCRN 118 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l-~C~H~Fh~~Ci~~wl~---~~~~CP~Cr~ 118 (195)
...| ||..... +...+.. .|...||..|+.--.. ..-.||.|+.
T Consensus 19 ~~~C-iC~~~~~-~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 19 LVTC-FCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp CCCS-TTCCCCT-TCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred ceEe-ECCCcCC-CCCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 5568 9988654 3334444 3999999999864321 2446999864
No 115
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=74.23 E-value=1.7 Score=28.98 Aligned_cols=52 Identities=19% Similarity=0.358 Sum_probs=32.7
Q ss_pred CCccccccccccC-CCceEEe-CCCCccCccChhhhhc--cCccccccccccccCC
Q psy7279 73 AAQCVICLAPFQP-GEEVKEL-LCHHKFHSECLEPWLR--ERQHCPLCRNAVSVGS 124 (195)
Q Consensus 73 ~~~C~IC~~~~~~-~~~~~~l-~C~H~Fh~~Ci~~wl~--~~~~CP~Cr~~~~~~~ 124 (195)
+..|.||...-.. .+..+.. .|.-.||..|+..-+. ..-.||.|........
T Consensus 25 ~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~~~~ 80 (88)
T 2l43_A 25 DAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRARPA 80 (88)
T ss_dssp CCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTTSCC
T ss_pred CCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCccchhh
Confidence 6789999975321 1122222 3889999999875321 2346999977654433
No 116
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=73.07 E-value=1.9 Score=33.99 Aligned_cols=45 Identities=33% Similarity=0.701 Sum_probs=26.0
Q ss_pred CCccccccccccCCCceEEe-CCCCccCccChhhhhcc-----Ccccccccc
Q psy7279 73 AAQCVICLAPFQPGEEVKEL-LCHHKFHSECLEPWLRE-----RQHCPLCRN 118 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l-~C~H~Fh~~Ci~~wl~~-----~~~CP~Cr~ 118 (195)
+..|.+|...-.. ...... .|...||..|+..=+.. .-.||.|+.
T Consensus 174 ~c~C~vC~~~~~~-~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 174 VCACHLCGGRQDP-DKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp TTSCSSSCCCCC---CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCCCcCCCCCCCC-CCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 3468888764222 233333 49999999999864432 236999965
No 117
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=72.46 E-value=3.5 Score=26.22 Aligned_cols=43 Identities=28% Similarity=0.647 Sum_probs=27.1
Q ss_pred CCccccccccccCCCceEEe-C--CC-CccCccChhhhhcc----Ccccccccccc
Q psy7279 73 AAQCVICLAPFQPGEEVKEL-L--CH-HKFHSECLEPWLRE----RQHCPLCRNAV 120 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l-~--C~-H~Fh~~Ci~~wl~~----~~~CP~Cr~~~ 120 (195)
...| ||..... + ..+.. . |. ..||..|+. +.. +-.||.|+..-
T Consensus 16 ~~~C-~C~~~~~-g-~MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 16 PTYC-LCHQVSY-G-EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp CCCS-TTCCCSC-S-SEECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCS
T ss_pred CCEE-ECCCCCC-C-CEeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCccc
Confidence 5578 8988643 2 33322 3 65 689999997 322 34699997643
No 118
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=71.79 E-value=3.2 Score=27.02 Aligned_cols=48 Identities=23% Similarity=0.469 Sum_probs=31.4
Q ss_pred CCccccccccccCCCceEEe-CCCCccCccChhhhhc------cCcccccccccc
Q psy7279 73 AAQCVICLAPFQPGEEVKEL-LCHHKFHSECLEPWLR------ERQHCPLCRNAV 120 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l-~C~H~Fh~~Ci~~wl~------~~~~CP~Cr~~~ 120 (195)
...|.+|...|..-..--.. .||.+||..|....+. ....|-.|...+
T Consensus 19 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~~~l~~~~~~~RVC~~C~~~l 73 (82)
T 2yw8_A 19 ATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNELALPSYPKPVRVCDSCHTLL 73 (82)
T ss_dssp CCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEEECCTTCSSCEEECHHHHHHT
T ss_pred CCcccCcCCcccCccccccCCCCCCEEChHHhCCeeecCCCCCcCEECHHHHHHH
Confidence 45799999998743222233 5999999999875431 123577775544
No 119
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=71.59 E-value=0.86 Score=28.19 Aligned_cols=42 Identities=21% Similarity=0.424 Sum_probs=27.9
Q ss_pred CccccccccccCCCceEEeC-CCCccCccChhhhhccCcccccc
Q psy7279 74 AQCVICLAPFQPGEEVKELL-CHHKFHSECLEPWLRERQHCPLC 116 (195)
Q Consensus 74 ~~C~IC~~~~~~~~~~~~l~-C~H~Fh~~Ci~~wl~~~~~CP~C 116 (195)
..|..|+..+... ....-+ |++.||.+|=.---..-..||-|
T Consensus 16 ~~C~~C~~~~~~~-~~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQ-HVYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTS-EEECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred CcccccCcccCCC-ccEECCccCcCcccchhHHHHhhccCCcCC
Confidence 3599999998622 112334 99999999954333444579887
No 120
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=71.35 E-value=5.8 Score=27.35 Aligned_cols=45 Identities=22% Similarity=0.448 Sum_probs=28.9
Q ss_pred CCCCccccccccccCCCceEEe---CCCCccCccChhhhhcc----Cccccccccccc
Q psy7279 71 APAAQCVICLAPFQPGEEVKEL---LCHHKFHSECLEPWLRE----RQHCPLCRNAVS 121 (195)
Q Consensus 71 ~~~~~C~IC~~~~~~~~~~~~l---~C~H~Fh~~Ci~~wl~~----~~~CP~Cr~~~~ 121 (195)
..+..|.+|.+. ...+.- .|...||..|+. +.. .-.||.|+-.+.
T Consensus 13 ~~~~~C~~C~~~----G~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~C 64 (107)
T 4gne_A 13 MHEDYCFQCGDG----GELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDEC 64 (107)
T ss_dssp SSCSSCTTTCCC----SEEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTTT
T ss_pred CCCCCCCcCCCC----CcEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCcC
Confidence 347789999842 244433 388999999987 432 225887765443
No 121
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=70.79 E-value=4.8 Score=26.23 Aligned_cols=40 Identities=20% Similarity=0.468 Sum_probs=29.7
Q ss_pred CCccccccccccCCCceEEeCCCCccCccChhhhhccCccccccccccccC
Q psy7279 73 AAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQHCPLCRNAVSVG 123 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 123 (195)
...|+.|-+.+. + . .+..-+..||..|+ .|-.|+..|...
T Consensus 25 ~~~C~~C~~~I~-~-~-~v~a~~~~~H~~CF--------~C~~C~~~L~~~ 64 (90)
T 2dar_A 25 TPMCAHCNQVIR-G-P-FLVALGKSWHPEEF--------NCAHCKNTMAYI 64 (90)
T ss_dssp CCBBSSSCCBCC-S-C-EEEETTEEECTTTC--------BCSSSCCBCSSS
T ss_pred CCCCccCCCEec-c-e-EEEECCccccccCC--------ccCCCCCCCCCC
Confidence 568999999885 2 2 33456788999987 588998887643
No 122
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=70.46 E-value=1 Score=28.70 Aligned_cols=43 Identities=33% Similarity=0.658 Sum_probs=26.2
Q ss_pred ccccccccccCCCceEEe-CCCCccCccChhhhhcc-----Ccccccccc
Q psy7279 75 QCVICLAPFQPGEEVKEL-LCHHKFHSECLEPWLRE-----RQHCPLCRN 118 (195)
Q Consensus 75 ~C~IC~~~~~~~~~~~~l-~C~H~Fh~~Ci~~wl~~-----~~~CP~Cr~ 118 (195)
.|.||...-. +.....- .|...||..|+..=+.. .-.||.|+.
T Consensus 20 ~C~~C~~~~~-~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQD-PDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCSC-GGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcCC-CCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 5667775322 1133322 38899999999854432 236888864
No 123
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=70.34 E-value=2.5 Score=30.43 Aligned_cols=48 Identities=15% Similarity=0.352 Sum_probs=31.8
Q ss_pred CCCcccccccccc-CCCceEE-eCCCCccCccChhhhhcc----Cccccccccc
Q psy7279 72 PAAQCVICLAPFQ-PGEEVKE-LLCHHKFHSECLEPWLRE----RQHCPLCRNA 119 (195)
Q Consensus 72 ~~~~C~IC~~~~~-~~~~~~~-l~C~H~Fh~~Ci~~wl~~----~~~CP~Cr~~ 119 (195)
.+..|.+|...|. ....... ..|+|.+|..|-..-... .-.|-+|+..
T Consensus 54 ~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~~~~~~~~W~C~vC~k~ 107 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNNRPHPVWLCKICLEQ 107 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCCSSSSCCEEEHHHHHH
T ss_pred CCccccccCCCcccccCCCCCCCCCCcccccccCCccCCCCCccceechhhHHH
Confidence 3678999999984 3223333 359999999997643221 1258888664
No 124
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=69.20 E-value=6.3 Score=25.69 Aligned_cols=33 Identities=24% Similarity=0.378 Sum_probs=23.8
Q ss_pred CCccccccccccCCCc-eEEeCCCCccCccChhh
Q psy7279 73 AAQCVICLAPFQPGEE-VKELLCHHKFHSECLEP 105 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~-~~~l~C~H~Fh~~Ci~~ 105 (195)
...|.+|...|..-.. .---.||.+||..|...
T Consensus 14 ~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 14 FGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSF 47 (84)
T ss_dssp CSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCE
T ss_pred CCcCcCcCCccccchhhhhhcCCCcEEChhhcCC
Confidence 4579999999874322 22335999999999754
No 125
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=69.10 E-value=2.9 Score=29.63 Aligned_cols=34 Identities=21% Similarity=0.408 Sum_probs=24.6
Q ss_pred CCccccccccccCCCceEEe-CCCCccCccChhhh
Q psy7279 73 AAQCVICLAPFQPGEEVKEL-LCHHKFHSECLEPW 106 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l-~C~H~Fh~~Ci~~w 106 (195)
...|.+|...|..-..--.. .||++||..|....
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKN 103 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred CCCCcCcCCccccccccccCCCCCeEEChHHhCCc
Confidence 45799999998743332333 59999999997654
No 126
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=68.81 E-value=3.2 Score=26.37 Aligned_cols=34 Identities=21% Similarity=0.315 Sum_probs=24.1
Q ss_pred CCccccccccccCCCceEE-eCCCCccCccChhhh
Q psy7279 73 AAQCVICLAPFQPGEEVKE-LLCHHKFHSECLEPW 106 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~-l~C~H~Fh~~Ci~~w 106 (195)
+..|.+|...|..-..--. -.||.+||..|....
T Consensus 11 ~~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~~ 45 (73)
T 1vfy_A 11 SDACMICSKKFSLLNRKHHCRSCGGVFCQEHSSNS 45 (73)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECGGGSCEE
T ss_pred CCcccCCCCccCCccccccCCCCCEEEcccccCCe
Confidence 3579999999874322222 359999999997643
No 127
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=68.60 E-value=6.1 Score=27.33 Aligned_cols=33 Identities=30% Similarity=0.527 Sum_probs=21.7
Q ss_pred Ccccccccccc----CC--CceEEe-CCCCccCccChhhh
Q psy7279 74 AQCVICLAPFQ----PG--EEVKEL-LCHHKFHSECLEPW 106 (195)
Q Consensus 74 ~~C~IC~~~~~----~~--~~~~~l-~C~H~Fh~~Ci~~w 106 (195)
..|.||+..-. .+ +..+.- .|+..||..|+...
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~ 41 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFT 41 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCCh
Confidence 46999987542 11 223333 49999999999765
No 128
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=68.38 E-value=3.2 Score=32.13 Aligned_cols=34 Identities=18% Similarity=0.363 Sum_probs=25.2
Q ss_pred CCccccccccccCCCceEEe-CCCCccCccChhhh
Q psy7279 73 AAQCVICLAPFQPGEEVKEL-LCHHKFHSECLEPW 106 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l-~C~H~Fh~~Ci~~w 106 (195)
+..|.+|...|..-..--.. .||++||..|....
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~~ 195 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQ 195 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCEE
T ss_pred CCccCCCCCccCCcccccccCCcCCEEChHHhCCe
Confidence 56899999998743333333 59999999997654
No 129
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=67.94 E-value=3.4 Score=28.52 Aligned_cols=33 Identities=27% Similarity=0.493 Sum_probs=21.9
Q ss_pred CCcccccccccc-----CCCceEEe-CCCCccCccChhh
Q psy7279 73 AAQCVICLAPFQ-----PGEEVKEL-LCHHKFHSECLEP 105 (195)
Q Consensus 73 ~~~C~IC~~~~~-----~~~~~~~l-~C~H~Fh~~Ci~~ 105 (195)
...|.+|+..-. .+++.+.- .|+..||..|+..
T Consensus 5 ~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~ 43 (112)
T 3v43_A 5 IPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKF 43 (112)
T ss_dssp CSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTC
T ss_pred CccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcC
Confidence 557999987531 11233333 4999999999963
No 130
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=66.83 E-value=3.2 Score=35.07 Aligned_cols=50 Identities=20% Similarity=0.452 Sum_probs=33.4
Q ss_pred CCccccccccccCCCceEEeCCCCccCccChhhhhcc-----CccccccccccccCCC
Q psy7279 73 AAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRE-----RQHCPLCRNAVSVGSI 125 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~-----~~~CP~Cr~~~~~~~~ 125 (195)
...|+|-...+. ..++...|.|.-|++ +..|+.. .-.||+|...+..+++
T Consensus 249 SL~CPlS~~ri~--~PvRg~~C~HlQCFD-l~sfL~~~~~~~~W~CPIC~k~~~~~dL 303 (371)
T 3i2d_A 249 SLQCPISYTRMK--YPSKSINCKHLQCFD-ALWFLHSQLQIPTWQCPVCQIDIALENL 303 (371)
T ss_dssp ESBCTTTSSBCS--SEEEETTCCSSCCEE-HHHHHHHHHHSCCCBCTTTCCBCCGGGE
T ss_pred eecCCCcccccc--ccCcCCcCCCcceEC-HHHHHHHhhcCCceeCCCCCcccCHHHe
Confidence 568998888777 345555699987665 3445532 3479999988765443
No 131
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=66.53 E-value=2.5 Score=30.79 Aligned_cols=43 Identities=23% Similarity=0.501 Sum_probs=30.3
Q ss_pred CCCccccccccccCCCceEEe-CCCCccCccChhhhhc-----------cCcccccccc
Q psy7279 72 PAAQCVICLAPFQPGEEVKEL-LCHHKFHSECLEPWLR-----------ERQHCPLCRN 118 (195)
Q Consensus 72 ~~~~C~IC~~~~~~~~~~~~l-~C~H~Fh~~Ci~~wl~-----------~~~~CP~Cr~ 118 (195)
.+..|.||.+.- ..... .|...||..||..-+. ..-.||.|+.
T Consensus 62 ~~d~C~vC~~GG----~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 62 MDEQCRWCAEGG----NLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp CBCSCSSSCCCS----SEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCeecccCCCC----cEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 377899999752 33333 4999999999986553 1336999953
No 132
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=66.49 E-value=3.8 Score=27.24 Aligned_cols=49 Identities=22% Similarity=0.480 Sum_probs=33.4
Q ss_pred CCccccccccccCCCc-eEEeCCCCccCccChhhhhc------cCccccccccccc
Q psy7279 73 AAQCVICLAPFQPGEE-VKELLCHHKFHSECLEPWLR------ERQHCPLCRNAVS 121 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~-~~~l~C~H~Fh~~Ci~~wl~------~~~~CP~Cr~~~~ 121 (195)
...|.+|...|..-.. .....||++||..|...... ....|-.|...+.
T Consensus 20 ~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~~l~~~~~~~RVC~~C~~~l~ 75 (90)
T 3t7l_A 20 APNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKCKLQYLEKEARVCVVCYETIS 75 (90)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEEEETTTTEEEEECHHHHHHHH
T ss_pred CCcCcCCCCcccchhhCccccCCCCEECCcccCCeeecCCCCCCCeECHHHHHHHH
Confidence 4579999998874333 22335999999999876542 1346888866654
No 133
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=66.42 E-value=6 Score=24.41 Aligned_cols=43 Identities=19% Similarity=0.517 Sum_probs=29.7
Q ss_pred CCccccccccccC-CCceEEeCCCCccCccChhhhhccCccccccccccccC
Q psy7279 73 AAQCVICLAPFQP-GEEVKELLCHHKFHSECLEPWLRERQHCPLCRNAVSVG 123 (195)
Q Consensus 73 ~~~C~IC~~~~~~-~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 123 (195)
...|+.|-+.+.. ++...+..-+..||..|+ .|-.|+..|...
T Consensus 5 ~~~C~~C~~~I~~~~~~~~~~a~~~~wH~~CF--------~C~~C~~~L~~~ 48 (72)
T 1x4l_A 5 SSGCAGCTNPISGLGGTKYISFEERQWHNDCF--------NCKKCSLSLVGR 48 (72)
T ss_dssp SCSBTTTTBCCCCSSSCSCEECSSCEECTTTC--------BCSSSCCBCTTS
T ss_pred CCCCcCCCccccCCCCcceEEECCcccCcccC--------EeccCCCcCCCC
Confidence 3479999998874 112333446788999986 588898877543
No 134
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=66.23 E-value=1.6 Score=28.42 Aligned_cols=43 Identities=35% Similarity=0.723 Sum_probs=25.8
Q ss_pred ccccccccccCCCceEEe-CCCCccCccChhhhhcc----C-cccccccc
Q psy7279 75 QCVICLAPFQPGEEVKEL-LCHHKFHSECLEPWLRE----R-QHCPLCRN 118 (195)
Q Consensus 75 ~C~IC~~~~~~~~~~~~l-~C~H~Fh~~Ci~~wl~~----~-~~CP~Cr~ 118 (195)
.|.||...-.. +....- .|...||..|+..-|.. . -.||.|+.
T Consensus 28 ~C~vC~~~~d~-~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQDP-DKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSCG-GGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCCCC-cceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 56677654321 122222 38899999999865543 2 36898865
No 135
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=66.02 E-value=1.2 Score=30.96 Aligned_cols=46 Identities=24% Similarity=0.572 Sum_probs=29.5
Q ss_pred ccccccccccCCCceEEe-CCCCccCccChhhhhcc----Cccccccccccc
Q psy7279 75 QCVICLAPFQPGEEVKEL-LCHHKFHSECLEPWLRE----RQHCPLCRNAVS 121 (195)
Q Consensus 75 ~C~IC~~~~~~~~~~~~l-~C~H~Fh~~Ci~~wl~~----~~~CP~Cr~~~~ 121 (195)
.|.||...-..+ ....- .|...||..|+..=+.. .-.||.|+..+.
T Consensus 60 ~C~~C~~~~~~~-~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~~~ 110 (114)
T 2kwj_A 60 SCILCGTSENDD-QLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWELLK 110 (114)
T ss_dssp CCTTTTCCTTTT-TEEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHHHHHH
T ss_pred ccCcccccCCCC-ceEEcCCCCccccccccCCCccCCCCCCeECccccchhh
Confidence 578887753322 33322 49999999999864433 235999976553
No 136
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=65.83 E-value=3.5 Score=32.16 Aligned_cols=49 Identities=20% Similarity=0.460 Sum_probs=33.3
Q ss_pred CCccccccccccCCCceEE-eCCCCccCccChhhhhc--------cCccccccccccc
Q psy7279 73 AAQCVICLAPFQPGEEVKE-LLCHHKFHSECLEPWLR--------ERQHCPLCRNAVS 121 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~-l~C~H~Fh~~Ci~~wl~--------~~~~CP~Cr~~~~ 121 (195)
+..|.+|...|..-..-.. -.||++||..|...... ....|-.|...+.
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~~~~p~~~~~~~~RVC~~C~~~l~ 221 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKYSTIPKFGIEKEVRVCEPCYEQLN 221 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEEEEEGGGTEEEEEEECHHHHHHHC
T ss_pred CCCCcCcCCCCCccccccccCCCcCEeChhhcCCcccCCCCCCCCCCEeCHHHHHHhh
Confidence 5689999998874333233 35999999999876432 1246888866553
No 137
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=65.80 E-value=2 Score=27.74 Aligned_cols=46 Identities=22% Similarity=0.475 Sum_probs=29.4
Q ss_pred CCccccccccccCCCceEEe---CCCCccCccChhhhhc---------cCcccccccccc
Q psy7279 73 AAQCVICLAPFQPGEEVKEL---LCHHKFHSECLEPWLR---------ERQHCPLCRNAV 120 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l---~C~H~Fh~~Ci~~wl~---------~~~~CP~Cr~~~ 120 (195)
...| ||......+ ..+.. .|...||..|+.---. .+-.||.|+..-
T Consensus 16 ~~~C-iC~~~~~~g-~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~ 73 (78)
T 1wew_A 16 KVRC-VCGNSLETD-SMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTS 73 (78)
T ss_dssp CCCC-SSCCCCCCS-CEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCC
T ss_pred CEEe-ECCCcCCCC-CEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCccc
Confidence 4568 798874333 33333 4999999999853211 245799997643
No 138
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=65.78 E-value=5.7 Score=24.32 Aligned_cols=39 Identities=28% Similarity=0.669 Sum_probs=28.4
Q ss_pred CCccccccccccCCCceEEeCCCCccCccChhhhhccCcccccccccccc
Q psy7279 73 AAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQHCPLCRNAVSV 122 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 122 (195)
...|+.|-+.+.. . .+..-+..||..|+ .|-.|+..|..
T Consensus 5 ~~~C~~C~~~I~~--~-~~~a~~~~~H~~CF--------~C~~C~~~L~~ 43 (70)
T 2d8z_A 5 SSGCVQCKKPITT--G-GVTYREQPWHKECF--------VCTACRKQLSG 43 (70)
T ss_dssp CCBCSSSCCBCCS--S-EEESSSSEEETTTS--------BCSSSCCBCTT
T ss_pred CCCCcccCCeecc--c-eEEECccccCCCCC--------ccCCCCCcCCc
Confidence 3479999998862 2 24456788998886 58889887753
No 139
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=65.44 E-value=2.9 Score=26.61 Aligned_cols=48 Identities=21% Similarity=0.423 Sum_probs=30.4
Q ss_pred CCCcccccccccc-CCCceEEe-CCCCccCccChhhhh--ccCccccccccc
Q psy7279 72 PAAQCVICLAPFQ-PGEEVKEL-LCHHKFHSECLEPWL--RERQHCPLCRNA 119 (195)
Q Consensus 72 ~~~~C~IC~~~~~-~~~~~~~l-~C~H~Fh~~Ci~~wl--~~~~~CP~Cr~~ 119 (195)
.+..|.||.+.-. .++..+.. .|.-.||..|+..-. ...-.||.|+..
T Consensus 15 ~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~~ 66 (71)
T 2ku3_A 15 EDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQS 66 (71)
T ss_dssp SSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcCc
Confidence 3678999987632 22233333 499999999986432 123369988653
No 140
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=63.98 E-value=7.5 Score=24.81 Aligned_cols=39 Identities=18% Similarity=0.620 Sum_probs=28.5
Q ss_pred CCccccccccccCCCceEEeCCCCccCccChhhhhccCccccccccccc
Q psy7279 73 AAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQHCPLCRNAVS 121 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 121 (195)
...|+-|-+.+..++.+. .-+..||..|+ .|-.|+..|.
T Consensus 15 ~~~C~~C~~~I~~~~~v~--a~~~~wH~~CF--------~C~~C~~~L~ 53 (80)
T 2dj7_A 15 PSHCAGCKEEIKHGQSLL--ALDKQWHVSCF--------KCQTCSVILT 53 (80)
T ss_dssp CSCCTTTCCCCSSSCCEE--ETTEEECTTTC--------BCSSSCCBCS
T ss_pred CCCCcCcCCeeCCCeEEE--ECCcccccccC--------CcCcCCCCcC
Confidence 457999999887554333 35678998886 5888988775
No 141
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=63.78 E-value=11 Score=24.34 Aligned_cols=39 Identities=18% Similarity=0.291 Sum_probs=29.1
Q ss_pred CCccccccccccCCCceEEeCCCCccCccChhhhhccCcccccccccccc
Q psy7279 73 AAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQHCPLCRNAVSV 122 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 122 (195)
...|..|-+.+.. .....-+..||..|+ .|-.|+..|..
T Consensus 25 ~~~C~~C~~~I~~---~~~~a~~~~~H~~CF--------~C~~C~~~L~~ 63 (89)
T 1x64_A 25 MPLCDKCGSGIVG---AVVKARDKYRHPECF--------VCADCNLNLKQ 63 (89)
T ss_dssp CCBCTTTCCBCCS---CCEESSSCEECTTTC--------CCSSSCCCTTT
T ss_pred CCCcccCCCEecc---cEEEECCceECccCC--------EecCCCCCCCC
Confidence 4579999998873 233457788999986 58889887754
No 142
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=61.63 E-value=2.2 Score=26.76 Aligned_cols=43 Identities=23% Similarity=0.417 Sum_probs=26.5
Q ss_pred CccccccccccCCCceEEeC---CCCccCccChhhhh---c-----cCcccccccc
Q psy7279 74 AQCVICLAPFQPGEEVKELL---CHHKFHSECLEPWL---R-----ERQHCPLCRN 118 (195)
Q Consensus 74 ~~C~IC~~~~~~~~~~~~l~---C~H~Fh~~Ci~~wl---~-----~~~~CP~Cr~ 118 (195)
..| ||......+ ..+..- |...||..|+.--- . .+-.||.||.
T Consensus 11 v~C-~C~~~~~~g-~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 11 VRC-ICSSTMVND-SMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRL 64 (68)
T ss_dssp ECC-TTCCCSCCS-CEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHH
T ss_pred EEe-ECCCCcCCC-CEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccC
Confidence 357 786654433 444443 88899999974211 1 1346999975
No 143
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=61.54 E-value=4.7 Score=33.91 Aligned_cols=49 Identities=16% Similarity=0.354 Sum_probs=32.8
Q ss_pred CCccccccccccCCCceEEeCCCCccCccChhhhhcc-----CccccccccccccCC
Q psy7279 73 AAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRE-----RQHCPLCRNAVSVGS 124 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~-----~~~CP~Cr~~~~~~~ 124 (195)
...|+|-...+. ...+...|.|.-|++ +..|+.. .-.||+|.+.+..++
T Consensus 215 SL~CPlS~~ri~--~P~Rg~~C~HlqCFD-l~sfL~~~~~~~~W~CPiC~k~~~~~d 268 (360)
T 4fo9_A 215 SLMCPLGKMRLT--IPCRAVTCTHLQCFD-AALYLQMNEKKPTWICPVCDKKAAYES 268 (360)
T ss_dssp ESBCTTTCSBCS--SEEEETTCCCCCCEE-HHHHHHHHHHSCCCBCTTTCSBCCGGG
T ss_pred eeeCCCccceec--cCCcCCCCCCCccCC-HHHHHHHHhhCCCeECCCCCcccCHHH
Confidence 457998887776 344555699986654 3445532 347999999886544
No 144
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=61.00 E-value=2.3 Score=29.25 Aligned_cols=44 Identities=23% Similarity=0.561 Sum_probs=27.6
Q ss_pred ccccccccccCCCceEEe-CCCCccCccChhhhhcc----Cccccccccc
Q psy7279 75 QCVICLAPFQPGEEVKEL-LCHHKFHSECLEPWLRE----RQHCPLCRNA 119 (195)
Q Consensus 75 ~C~IC~~~~~~~~~~~~l-~C~H~Fh~~Ci~~wl~~----~~~CP~Cr~~ 119 (195)
.|.||...-.. +....- .|...||..|+..-+.. .-.||.|+.-
T Consensus 56 ~C~~C~~~~~~-~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~c 104 (111)
T 2ysm_A 56 VCQNCKQSGED-SKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRIC 104 (111)
T ss_dssp CCTTTCCCSCC-TTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHCC
T ss_pred cccccCccCCC-CCeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcCc
Confidence 57777765332 123222 49999999999864433 3369988653
No 145
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=60.64 E-value=12 Score=23.62 Aligned_cols=39 Identities=21% Similarity=0.324 Sum_probs=29.1
Q ss_pred CCccccccccccCCCceEEeCCCCccCccChhhhhccCcccccccccccc
Q psy7279 73 AAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQHCPLCRNAVSV 122 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 122 (195)
...|..|-+.+.. . .+..-+..||..|+ .|-.|+..|..
T Consensus 15 ~~~C~~C~~~I~~--~-~~~a~~~~~H~~CF--------~C~~C~~~L~~ 53 (79)
T 1x62_A 15 LPMCDKCGTGIVG--V-FVKLRDRHRHPECY--------VCTDCGTNLKQ 53 (79)
T ss_dssp CCCCSSSCCCCCS--S-CEECSSCEECTTTT--------SCSSSCCCHHH
T ss_pred CCccccCCCCccC--c-EEEECcceeCcCcC--------eeCCCCCCCCC
Confidence 4579999998873 2 34456789999987 58888887753
No 146
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=59.66 E-value=3.2 Score=26.10 Aligned_cols=38 Identities=24% Similarity=0.537 Sum_probs=22.2
Q ss_pred ccccccccccCCCceEEeCCCCccCccChhhhhccCcccccccccccc
Q psy7279 75 QCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQHCPLCRNAVSV 122 (195)
Q Consensus 75 ~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 122 (195)
.|+.|-+.+..++.+ ..-+..||..|+ .|..|+..+..
T Consensus 2 ~C~~C~~~I~~~~~v--~a~~~~~H~~CF--------~C~~C~~~L~~ 39 (76)
T 1iml_A 2 KCPKCDKEVYFAERV--TSLGKDWHRPCL--------KCEKCGKTLTS 39 (76)
T ss_dssp BCTTTSSBCCGGGEE--EETTEEEETTTC--------BCTTTCCBCCT
T ss_pred cCCCCCCEEECceEE--EECCccccCCCC--------CccccCccCCC
Confidence 477777766533222 223667777775 46777666643
No 147
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=59.55 E-value=4.8 Score=24.74 Aligned_cols=40 Identities=23% Similarity=0.509 Sum_probs=28.2
Q ss_pred CCccccccccccCCCceEEeCCCCccCccChhhhhccCccccccccccccC
Q psy7279 73 AAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQHCPLCRNAVSVG 123 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 123 (195)
...|..|-+.+.. .. +..-+..||..|+ .|-.|+..|...
T Consensus 5 ~~~C~~C~~~I~~--~~-~~a~~~~~H~~CF--------~C~~C~~~L~~~ 44 (70)
T 2d8x_A 5 SSGCHQCGEFIIG--RV-IKAMNNSWHPECF--------RCDLCQEVLADI 44 (70)
T ss_dssp SSBCSSSCCBCCS--CC-EEETTEEECTTTS--------BCSSSCCBCSSS
T ss_pred CCcCccCCCEecc--eE-EEECcccccccCC--------EeCCCCCcCCCC
Confidence 4579999998772 22 3345778898886 588888877543
No 148
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=59.44 E-value=2 Score=26.32 Aligned_cols=41 Identities=29% Similarity=0.693 Sum_probs=25.7
Q ss_pred CCccccccccccCCCceEEe-C--CC-CccCccChhhhhcc----Ccccccccc
Q psy7279 73 AAQCVICLAPFQPGEEVKEL-L--CH-HKFHSECLEPWLRE----RQHCPLCRN 118 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l-~--C~-H~Fh~~Ci~~wl~~----~~~CP~Cr~ 118 (195)
...| ||..... + ..+.- . |. ..||..|+. +.. +-.||.|+.
T Consensus 9 ~~yC-~C~~~~~-g-~mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 9 PTYC-LCHQVSY-G-EMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CEET-TTTEECC-S-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CcEE-ECCCCCC-C-CeeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 4567 8988642 2 33322 3 65 699999997 322 336999964
No 149
>4g3o_A E3 ubiquitin-protein ligase AMFR; all-helical structure, BAG6; 1.60A {Homo sapiens}
Probab=58.96 E-value=4.1 Score=24.96 Aligned_cols=19 Identities=37% Similarity=0.450 Sum_probs=16.4
Q ss_pred CCHHHHHHHHHHhCCcccc
Q psy7279 155 SDAEAFAEALVEAFPQVFP 173 (195)
Q Consensus 155 s~~~~~~~~~~~~~p~~~~ 173 (195)
++++++++++++|||++..
T Consensus 15 sql~~Mve~V~~mFPqv~~ 33 (58)
T 4g3o_A 15 GQLNAMAHQIQEMFPQVPY 33 (58)
T ss_dssp HHHHHHHHHHHHHCTTSCH
T ss_pred HHHHHHHHHHHHHcCCCCH
Confidence 4788999999999999853
No 150
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=58.06 E-value=5.3 Score=24.19 Aligned_cols=39 Identities=21% Similarity=0.447 Sum_probs=28.4
Q ss_pred CCccccccccccCCCceEEeCCCCccCccChhhhhccCcccccccccccc
Q psy7279 73 AAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQHCPLCRNAVSV 122 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 122 (195)
...|+.|-+.+. + . ....-+..||..|+ .|-.|+..+..
T Consensus 5 ~~~C~~C~~~I~-~-~-~~~a~~~~~H~~CF--------~C~~C~~~L~~ 43 (66)
T 1nyp_A 5 VPICGACRRPIE-G-R-VVNAMGKQWHVEHF--------VCAKCEKPFLG 43 (66)
T ss_dssp CCEETTTTEECC-S-C-EECCTTSBEETTTC--------BCTTTCCBCSS
T ss_pred CCCCcccCCEec-c-e-EEEECccccccCcC--------EECCCCCCCCC
Confidence 457999999887 2 2 33456778998886 58889887754
No 151
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=57.47 E-value=2.8 Score=28.96 Aligned_cols=27 Identities=19% Similarity=0.445 Sum_probs=16.9
Q ss_pred eEEeCCCCccCccChhhhhccCcccccccccc
Q psy7279 89 VKELLCHHKFHSECLEPWLRERQHCPLCRNAV 120 (195)
Q Consensus 89 ~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~ 120 (195)
+....||+.|. .-+.....||.|+..-
T Consensus 68 ~~C~~CG~~F~-----~~~~kPsrCP~CkSe~ 94 (105)
T 2gmg_A 68 AQCRKCGFVFK-----AEINIPSRCPKCKSEW 94 (105)
T ss_dssp CBBTTTCCBCC-----CCSSCCSSCSSSCCCC
T ss_pred cChhhCcCeec-----ccCCCCCCCcCCCCCc
Confidence 34445889881 1223456799998753
No 152
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=57.35 E-value=13 Score=23.66 Aligned_cols=42 Identities=24% Similarity=0.552 Sum_probs=29.8
Q ss_pred CCccccccccccCCCceEEeCCCCccCccChhhhhccCccccccccccccCC
Q psy7279 73 AAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQHCPLCRNAVSVGS 124 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~~~ 124 (195)
...|+.|-+.+...+.+. .-+..||..|+ .|-.|+..|....
T Consensus 15 ~~~C~~C~~~I~~~e~v~--a~~~~wH~~CF--------~C~~C~~~L~~~~ 56 (82)
T 2co8_A 15 GDLCALCGEHLYVLERLC--VNGHFFHRSCF--------RCHTCEATLWPGG 56 (82)
T ss_dssp SCBCSSSCCBCCTTTBCC--BTTBCCBTTTC--------BCSSSCCBCCTTS
T ss_pred CCCCcccCCCcccceEEE--ECCCeeCCCcC--------EEcCCCCCcCCCc
Confidence 457999999886443332 35778999886 5888888776544
No 153
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=57.33 E-value=5.4 Score=23.47 Aligned_cols=40 Identities=33% Similarity=0.692 Sum_probs=25.0
Q ss_pred cccccccCCCceEEe-CCCCccCccChhhhhc---cCcccccccc
Q psy7279 78 ICLAPFQPGEEVKEL-LCHHKFHSECLEPWLR---ERQHCPLCRN 118 (195)
Q Consensus 78 IC~~~~~~~~~~~~l-~C~H~Fh~~Ci~~wl~---~~~~CP~Cr~ 118 (195)
||..... +...+.- .|...||..|+.--.. ..-.||.|+.
T Consensus 8 ~C~~~~~-~~~MI~Cd~C~~W~H~~Cvgi~~~~~~~~~~C~~C~~ 51 (52)
T 3o7a_A 8 FCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 51 (52)
T ss_dssp TTCCBCT-TCCEEECTTTCCEEETTTTTCCGGGCCSSCCCHHHHT
T ss_pred EeCCcCC-CCCEEEcCCCCccccccccCCCcccCCCcEECcCCCC
Confidence 6766543 3344444 3999999999863321 2446999864
No 154
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=56.98 E-value=3.7 Score=27.46 Aligned_cols=44 Identities=18% Similarity=0.360 Sum_probs=26.3
Q ss_pred CCccccccccccCCCceEEe-CCC---CccCccChhhhh--ccCccccc-cccc
Q psy7279 73 AAQCVICLAPFQPGEEVKEL-LCH---HKFHSECLEPWL--RERQHCPL-CRNA 119 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l-~C~---H~Fh~~Ci~~wl--~~~~~CP~-Cr~~ 119 (195)
...| ||..... + ..+.. .|. ..||..|+.--. ...-.||. |+..
T Consensus 26 ~~yC-iC~~~~~-g-~MI~CD~c~C~~eWfH~~CVgl~~~p~~~W~Cp~cC~~~ 76 (90)
T 2jmi_A 26 EVYC-FCRNVSY-G-PMVACDNPACPFEWFHYGCVGLKQAPKGKWYCSKDCKEI 76 (90)
T ss_dssp SCCS-TTTCCCS-S-SEECCCSSSCSCSCEETTTSSCSSCTTSCCCSSHHHHHH
T ss_pred CcEE-EeCCCCC-C-CEEEecCCCCccccCcCccCCCCcCCCCCccCChhhcch
Confidence 5567 9987533 2 33333 244 689999986211 12347999 9753
No 155
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=56.49 E-value=2.1 Score=29.20 Aligned_cols=13 Identities=46% Similarity=1.091 Sum_probs=11.2
Q ss_pred ccCccChhhhhcc
Q psy7279 97 KFHSECLEPWLRE 109 (195)
Q Consensus 97 ~Fh~~Ci~~wl~~ 109 (195)
-||+.|+.+|+..
T Consensus 42 GFCRNCLskWy~~ 54 (105)
T 2o35_A 42 GFCRNCLSNWYRE 54 (105)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4999999999863
No 156
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=56.48 E-value=10 Score=23.22 Aligned_cols=40 Identities=20% Similarity=0.448 Sum_probs=28.2
Q ss_pred CCccccccccccCCCceEEeCCCCccCccChhhhhccCccccccccccc
Q psy7279 73 AAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQHCPLCRNAVS 121 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 121 (195)
...|..|-+.+...+ .....=+..||..|+ .|-.|+..+.
T Consensus 5 ~~~C~~C~~~I~~~~-~~~~a~~~~~H~~CF--------~C~~C~~~L~ 44 (72)
T 1x61_A 5 SSGCGGCGEDVVGDG-AGVVALDRVFHVGCF--------VCSTCRAQLR 44 (72)
T ss_dssp CCCCSSSCSCCCSSS-CCEECSSSEECTTTC--------BCSSSCCBCT
T ss_pred CCCCccCCCccCCCc-eEEEECCCeEcccCC--------cccccCCcCC
Confidence 457999998776432 233345788999886 5888988874
No 157
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=56.22 E-value=2.2 Score=29.11 Aligned_cols=12 Identities=42% Similarity=1.063 Sum_probs=10.8
Q ss_pred ccCccChhhhhc
Q psy7279 97 KFHSECLEPWLR 108 (195)
Q Consensus 97 ~Fh~~Ci~~wl~ 108 (195)
-||+.|+.+|+.
T Consensus 41 GFCRNCLskWy~ 52 (104)
T 3fyb_A 41 DFCRNCLAKWLM 52 (104)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 499999999986
No 158
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=56.22 E-value=5.7 Score=24.85 Aligned_cols=41 Identities=27% Similarity=0.558 Sum_probs=29.7
Q ss_pred CCccccccccccCCCceEEeCCCCccCccChhhhhccCccccccccccccC
Q psy7279 73 AAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQHCPLCRNAVSVG 123 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 123 (195)
...|+.|-+.+..++.+ ..-+..||..|+ .|..|+..|...
T Consensus 9 ~~~C~~C~~~I~~~~~v--~a~~~~~H~~CF--------~C~~C~~~L~~~ 49 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAEKV--SSLGKDWHKFCL--------KCERCSKTLTPG 49 (76)
T ss_dssp CCBCTTTCCBCCTTTEE--EETTEEEETTTC--------BCSSSCCBCCTT
T ss_pred CCCCcCCCCEeECCeEE--EECCeEeeCCCC--------CCCCCCCccCCC
Confidence 45799999988754432 345778998886 588998887543
No 159
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=56.04 E-value=2.9 Score=36.64 Aligned_cols=47 Identities=26% Similarity=0.581 Sum_probs=31.0
Q ss_pred CCccccccccccCCCceEEeC-CCCccCccChhhhhc-----cCcccccccccc
Q psy7279 73 AAQCVICLAPFQPGEEVKELL-CHHKFHSECLEPWLR-----ERQHCPLCRNAV 120 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l~-C~H~Fh~~Ci~~wl~-----~~~~CP~Cr~~~ 120 (195)
...| ||...+..+...+... |...||..|+.---. ..-.||.|+...
T Consensus 37 ~~yC-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 89 (488)
T 3kv5_D 37 PVYC-VCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAVLH 89 (488)
T ss_dssp CEET-TTTEECCTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHHHH
T ss_pred CeEE-eCCCcCCCCCCeEEccCCCCceeeeecCcCcccccCCCEEECCCCcCCc
Confidence 3446 8988764344555554 999999999853221 234799998654
No 160
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=55.93 E-value=4.6 Score=28.92 Aligned_cols=43 Identities=23% Similarity=0.507 Sum_probs=29.0
Q ss_pred CCCccccccccccCCCceEEe-CCCCccCccChhhhh------c-----cCcccccccc
Q psy7279 72 PAAQCVICLAPFQPGEEVKEL-LCHHKFHSECLEPWL------R-----ERQHCPLCRN 118 (195)
Q Consensus 72 ~~~~C~IC~~~~~~~~~~~~l-~C~H~Fh~~Ci~~wl------~-----~~~~CP~Cr~ 118 (195)
.+..|.||.+.- +...- .|-..||..||..-+ + ..-.|+.|+-
T Consensus 56 ~~~~C~vC~dGG----~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 56 MDEQCRWCAEGG----NLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp CBSSCTTTCCCS----EEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCCcCeecCCCC----eeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 367899999752 33222 488999999998652 1 1236999944
No 161
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=55.39 E-value=4.4 Score=26.57 Aligned_cols=30 Identities=23% Similarity=0.603 Sum_probs=20.7
Q ss_pred eEEeC-CCCccCccChhhhhccC--cccccccc
Q psy7279 89 VKELL-CHHKFHSECLEPWLRER--QHCPLCRN 118 (195)
Q Consensus 89 ~~~l~-C~H~Fh~~Ci~~wl~~~--~~CP~Cr~ 118 (195)
.+..+ |++.||..|-..|-..| .+|..-+.
T Consensus 43 ~v~C~~C~~~FC~~C~~~w~~~H~~~sC~~~~~ 75 (86)
T 2ct7_A 43 EATCPQCHQTFCVRCKRQWEEQHRGRSCEDFQN 75 (86)
T ss_dssp CEECTTTCCEECSSSCSBCCTTTTTSCHHHHHH
T ss_pred ceEeCCCCCccccccCCchhhcCCCCChHHHHH
Confidence 35566 99999999999984443 35655433
No 162
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=55.27 E-value=12 Score=23.59 Aligned_cols=40 Identities=15% Similarity=0.449 Sum_probs=28.6
Q ss_pred CCccccccccccCCCceEEeCCCCccCccChhhhhccCccccccccccccC
Q psy7279 73 AAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQHCPLCRNAVSVG 123 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 123 (195)
...|+-|-+.+. + .. +..-+..||..|+ .|-.|+..|...
T Consensus 15 ~~~C~~C~~~I~-~-~~-v~a~~~~~H~~CF--------~C~~C~~~L~~~ 54 (79)
T 2cor_A 15 KYICQKCHAIID-E-QP-LIFKNDPYHPDHF--------NCANCGKELTAD 54 (79)
T ss_dssp CCBCTTTCCBCC-S-CC-CCCSSSCCCTTTS--------BCSSSCCBCCTT
T ss_pred CCCCccCCCEec-c-eE-EEECcceeCCCCC--------EeCCCCCccCCC
Confidence 457999999877 2 22 2346778898886 588898877643
No 163
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=54.85 E-value=2.2 Score=27.77 Aligned_cols=19 Identities=32% Similarity=0.721 Sum_probs=15.2
Q ss_pred CCCCccCccChhhhhccCccc
Q psy7279 93 LCHHKFHSECLEPWLRERQHC 113 (195)
Q Consensus 93 ~C~H~Fh~~Ci~~wl~~~~~C 113 (195)
.|++.||..|...|-. ..|
T Consensus 55 ~C~~~FC~~C~~~wH~--~~C 73 (80)
T 2jmo_A 55 GCGFAFCRECKEAYHE--GEC 73 (80)
T ss_dssp CCSCCEETTTTEECCS--SCS
T ss_pred CCCCeeccccCccccC--Ccc
Confidence 4999999999999844 445
No 164
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=54.55 E-value=6.8 Score=23.93 Aligned_cols=39 Identities=18% Similarity=0.504 Sum_probs=27.6
Q ss_pred CCccccccccccCCCceEEeCCCCccCccChhhhhccCcccccccccccc
Q psy7279 73 AAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQHCPLCRNAVSV 122 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 122 (195)
...|+.|-+.+.. .. +..-+..||..|+ .|-.|+..+..
T Consensus 5 ~~~C~~C~~~I~~--~~-~~a~~~~~H~~CF--------~C~~C~~~L~~ 43 (69)
T 2cur_A 5 SSGCVKCNKAITS--GG-ITYQDQPWHADCF--------VCVTCSKKLAG 43 (69)
T ss_dssp CCCCSSSCCCCCT--TC-EEETTEEECTTTT--------BCTTTCCBCTT
T ss_pred cCCCcccCCEeCc--ce-EEECccccccCcC--------EECCCCCCCCC
Confidence 3479999998763 22 2335778998886 58889888753
No 165
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=54.41 E-value=12 Score=22.85 Aligned_cols=41 Identities=22% Similarity=0.577 Sum_probs=28.9
Q ss_pred CCccccccccccCCCceEEeCCCCccCccChhhhhccCcccccccccccc
Q psy7279 73 AAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQHCPLCRNAVSV 122 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 122 (195)
...|..|-+.+...+. ....-+..||..|+ .|-.|+..+..
T Consensus 5 ~~~C~~C~~~I~~~~~-~~~a~~~~~H~~CF--------~C~~C~~~L~~ 45 (72)
T 1wyh_A 5 SSGCSACGETVMPGSR-KLEYGGQTWHEHCF--------LCSGCEQPLGS 45 (72)
T ss_dssp CCBCSSSCCBCCSSSC-EECSTTCCEETTTC--------BCTTTCCBTTT
T ss_pred CCCCccCCCccccCcc-EEEECccccCcccC--------eECCCCCcCCC
Confidence 4579999998874322 33346788998886 58888887754
No 166
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=54.34 E-value=16 Score=23.64 Aligned_cols=41 Identities=34% Similarity=0.745 Sum_probs=29.9
Q ss_pred CCccccccccccCCCceEEeCCCCccCccChhhhhccCccccccccccccC
Q psy7279 73 AAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQHCPLCRNAVSVG 123 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 123 (195)
...|+.|-+.+...+. +..-+..||..|+ .|-.|...|...
T Consensus 15 ~~~C~~C~~~I~~~~~--v~a~~~~~H~~CF--------~C~~C~~~L~~~ 55 (91)
T 2d8y_A 15 RETCVECQKTVYPMER--LLANQQVFHISCF--------RCSYCNNKLSLG 55 (91)
T ss_dssp SCBCTTTCCBCCTTSE--EECSSSEEETTTC--------BCTTTCCBCCTT
T ss_pred CCcCccCCCccCCcee--EEECCCEECCCCC--------eeCCCCCCCCCC
Confidence 4579999998874432 3457788999886 588888877554
No 167
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=54.27 E-value=11 Score=23.83 Aligned_cols=41 Identities=17% Similarity=0.588 Sum_probs=29.0
Q ss_pred CCccccccccccCCCceEEeCCCCccCccChhhhhccCcccccccccccc
Q psy7279 73 AAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQHCPLCRNAVSV 122 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 122 (195)
...|+.|-+.+..++.. +..=+..||..|+ .|-.|+..+..
T Consensus 15 ~~~C~~C~~~I~~~~~~-~~a~~~~~H~~CF--------~C~~C~~~L~~ 55 (82)
T 1x63_A 15 SPKCKGCFKAIVAGDQN-VEYKGTVWHKDCF--------TCSNCKQVIGT 55 (82)
T ss_dssp SCBCSSSCCBCCSSSCE-EECSSCEEETTTC--------CCSSSCCCCTT
T ss_pred CCcCccCCcccccCceE-EEECccccccccC--------chhhCCCccCC
Confidence 35799999988754443 3345778898886 58888877754
No 168
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=54.17 E-value=5.9 Score=29.13 Aligned_cols=46 Identities=24% Similarity=0.471 Sum_probs=31.0
Q ss_pred CCccccccccccC--CCceEEeCCCCccCccChhhhhccC--ccccccccc
Q psy7279 73 AAQCVICLAPFQP--GEEVKELLCHHKFHSECLEPWLRER--QHCPLCRNA 119 (195)
Q Consensus 73 ~~~C~IC~~~~~~--~~~~~~l~C~H~Fh~~Ci~~wl~~~--~~CP~Cr~~ 119 (195)
+..|++|...|.. +.......|+|.+|..|-. |.... -.|-+|+..
T Consensus 68 ~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~-~~~~~~~W~C~vC~k~ 117 (153)
T 2zet_C 68 ETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSH-AHPEEQGWLCDPCHLA 117 (153)
T ss_dssp GTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEE-CCSSSSSCEEHHHHHH
T ss_pred CccchhhcCccccccCCCCcCCCCCchhhccccc-ccCCCCcEeeHHHHHH
Confidence 6789999998642 2233334599999999973 44332 258888664
No 169
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=53.45 E-value=7.7 Score=24.56 Aligned_cols=41 Identities=24% Similarity=0.497 Sum_probs=29.1
Q ss_pred CCccccccccccCCCceEEeCCCCccCccChhhhhccCccccccccccccC
Q psy7279 73 AAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQHCPLCRNAVSVG 123 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 123 (195)
...|..|-+.+..++. +..-+..||..|+ .|-.|+..+...
T Consensus 7 ~~~C~~C~~~I~~~~~--~~a~~~~~H~~CF--------~C~~C~~~L~~~ 47 (81)
T 1a7i_A 7 GNKCGACGRTVYHAEE--VQCDGRSFHRCCF--------LCMVCRKNLDST 47 (81)
T ss_dssp -CBCSSSCCBCSSTTE--EEETTEEEESSSE--------ECSSSCCEECSS
T ss_pred CCcCcCcCccccCcee--EEeCCcccccccC--------ccCCCCCCCCCC
Confidence 4579999998865442 3346788998886 488888877544
No 170
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=52.41 E-value=10 Score=23.77 Aligned_cols=39 Identities=23% Similarity=0.557 Sum_probs=27.9
Q ss_pred CCccccccccccCCCceEEeCCCCccCccChhhhhccCcccccccccccc
Q psy7279 73 AAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQHCPLCRNAVSV 122 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 122 (195)
...|+.|-+.+.. . .+..=+..||..|+ .|-.|+..|..
T Consensus 15 ~~~C~~C~~~I~~--~-~v~a~~~~~H~~CF--------~C~~C~~~L~~ 53 (80)
T 2cuq_A 15 APRCARCSKTLTQ--G-GVTYRDQPWHRECL--------VCTGCQTPLAG 53 (80)
T ss_dssp SCCCTTTCCCCCS--C-CEESSSSEECTTTC--------BCSSSCCBCTT
T ss_pred CCcCCCCCCEecC--c-EEEECCchhhhhhC--------CcccCCCcCCC
Confidence 3479999988763 2 33456788998886 58888887743
No 171
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=52.38 E-value=16 Score=22.64 Aligned_cols=42 Identities=26% Similarity=0.626 Sum_probs=29.3
Q ss_pred CCccccccccccCCCceEEeCCCCccCccChhhhhccCccccccccccccC
Q psy7279 73 AAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQHCPLCRNAVSVG 123 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 123 (195)
...|+-|-+.+...+... ..-+..||..|+ .|-.|+..+...
T Consensus 11 ~~~C~~C~~~I~~~~~~~-~a~~~~~H~~CF--------~C~~C~~~L~~~ 52 (77)
T 1g47_A 11 SATCERCKGGFAPAEKIV-NSNGELYHEQCF--------VCAQCFQQFPEG 52 (77)
T ss_dssp CCBCSSSCCBCCSTTTCE-EETTEEECTTTC--------CCTTTCCCCGGG
T ss_pred CCCchhcCCccCCCceEE-EeCccEeccccC--------eECCCCCCCCCC
Confidence 568999999886443433 235678898886 588888877543
No 172
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=52.24 E-value=3 Score=35.32 Aligned_cols=48 Identities=15% Similarity=0.251 Sum_probs=0.0
Q ss_pred CCccccccccccCCC-ceEEeCCCCccCccChhhhhc-------cCcccccccccc
Q psy7279 73 AAQCVICLAPFQPGE-EVKELLCHHKFHSECLEPWLR-------ERQHCPLCRNAV 120 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~-~~~~l~C~H~Fh~~Ci~~wl~-------~~~~CP~Cr~~~ 120 (195)
...|.+|...|..-. ......||++||..|....+. ....|-.|-..+
T Consensus 375 ~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l 430 (434)
T 3mpx_A 375 VMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGEL 430 (434)
T ss_dssp --------------------------------------------------------
T ss_pred CCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHH
Confidence 457999999886332 223335999999999876542 134587776544
No 173
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=51.63 E-value=9.8 Score=24.03 Aligned_cols=37 Identities=27% Similarity=0.699 Sum_probs=25.5
Q ss_pred CccccccccccCCCceEEeCCCCccCccChhhhhccCccccccccccc
Q psy7279 74 AQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQHCPLCRNAVS 121 (195)
Q Consensus 74 ~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 121 (195)
..|+.|-+.+. + .. +..-+..||..|+ .|-.|+..+.
T Consensus 16 ~~C~~C~~~I~-~-~~-v~a~~~~wH~~CF--------~C~~C~~~L~ 52 (81)
T 1v6g_A 16 TRCFSCDQFIE-G-EV-VSALGKTYHPDCF--------VCAVCRLPFP 52 (81)
T ss_dssp CBCTTTCCBCC-S-CC-EEETTEEECTTTS--------SCSSSCCCCC
T ss_pred CcCccccCEec-c-ce-EEECCceeCccCC--------ccccCCCCCC
Confidence 47999999877 2 22 2346778888886 4777777664
No 174
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=50.29 E-value=11 Score=23.51 Aligned_cols=38 Identities=16% Similarity=0.361 Sum_probs=25.7
Q ss_pred CCccccccccccCCCceEEeCCCCccCccChhhhhccCccccccccccc
Q psy7279 73 AAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQHCPLCRNAVS 121 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 121 (195)
...|+-|-..+.. ..+..-+..||..|+ .|-.|...|.
T Consensus 5 ~~~C~~C~~~I~~---~~v~a~~~~wH~~CF--------~C~~C~~~L~ 42 (73)
T 1wig_A 5 SSGCDSCEKYITG---RVLEAGEKHYHPSCA--------LCVRCGQMFA 42 (73)
T ss_dssp CCSCSSSCCCCSS---CCBCCSSCCBCTTTS--------CCSSSCCCCC
T ss_pred cCCcccCCCEecC---eeEEeCCCCCCCCcC--------EeCCCCCCCC
Confidence 3468889888763 223346778888886 4777777664
No 175
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=49.87 E-value=3.6 Score=27.04 Aligned_cols=40 Identities=18% Similarity=0.578 Sum_probs=22.0
Q ss_pred CccccccccccCCCceEEeCCCCccCccChhhhhccCccccccccccc
Q psy7279 74 AQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQHCPLCRNAVS 121 (195)
Q Consensus 74 ~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 121 (195)
..|+.|..++..... +.+|..|-... .....||.|.+++.
T Consensus 3 ~~CP~C~~~l~~~~~-------~~~C~~C~~~~-~~~afCPeCgq~Le 42 (81)
T 2jrp_A 3 ITCPVCHHALERNGD-------TAHCETCAKDF-SLQALCPDCRQPLQ 42 (81)
T ss_dssp CCCSSSCSCCEECSS-------EEECTTTCCEE-EEEEECSSSCSCCC
T ss_pred CCCCCCCCccccCCC-------ceECccccccC-CCcccCcchhhHHH
Confidence 468888887663322 23344554432 22336777766663
No 176
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=49.37 E-value=7.9 Score=27.04 Aligned_cols=39 Identities=21% Similarity=0.480 Sum_probs=29.4
Q ss_pred CCccccccccccCCCceEEeCCCCccCccChhhhhccCccccccccccc
Q psy7279 73 AAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQHCPLCRNAVS 121 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 121 (195)
...|+-|-+.+.. ..+...-+..||..|+ .|-.|+..|.
T Consensus 61 ~~~C~~C~~~I~~--~~~v~a~~~~wH~~CF--------~C~~C~~~L~ 99 (123)
T 2l4z_A 61 WKRCAGCGGKIAD--RFLLYAMDSYWHSRCL--------KCSSCQAQLG 99 (123)
T ss_dssp CSBBSSSSSBCCS--SSEEEETTEEEETTTS--------BCTTTCCBGG
T ss_pred CCcCcCCCCCcCC--cEEEEeCCcEEccccc--------CcCcCCCccc
Confidence 5689999998773 3233446788999986 5999998885
No 177
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=48.83 E-value=3.9 Score=26.07 Aligned_cols=45 Identities=27% Similarity=0.646 Sum_probs=29.1
Q ss_pred ccccccccccCCCceEEe-CCCCccCccChhhhhc-----cCcccccccccc
Q psy7279 75 QCVICLAPFQPGEEVKEL-LCHHKFHSECLEPWLR-----ERQHCPLCRNAV 120 (195)
Q Consensus 75 ~C~IC~~~~~~~~~~~~l-~C~H~Fh~~Ci~~wl~-----~~~~CP~Cr~~~ 120 (195)
.| ||...+..+...+.. .|.-.||..|+.--.. ..-.||.|+...
T Consensus 12 yC-iC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~~ 62 (75)
T 3kqi_A 12 YC-VCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKTH 62 (75)
T ss_dssp ET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHHH
T ss_pred EE-ECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCcccC
Confidence 44 888765433344444 3999999999853321 235699997654
No 178
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=48.73 E-value=6.9 Score=24.48 Aligned_cols=41 Identities=24% Similarity=0.574 Sum_probs=27.7
Q ss_pred CCccccccccccC-CCceEEeCCCCccCccChhhhhccCccccccccccc
Q psy7279 73 AAQCVICLAPFQP-GEEVKELLCHHKFHSECLEPWLRERQHCPLCRNAVS 121 (195)
Q Consensus 73 ~~~C~IC~~~~~~-~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 121 (195)
...|+.|-+.+.. ++...+..-+..||..|+ .|-.|+..|.
T Consensus 5 ~~~C~~C~~~I~~~g~~~~~~a~~~~wH~~CF--------~C~~C~~~L~ 46 (76)
T 1x68_A 5 SSGCVACSKPISGLTGAKFICFQDSQWHSECF--------NCGKCSVSLV 46 (76)
T ss_dssp CCCCTTTCCCCCTTTTCCEEEETTEEEEGGGC--------BCTTTCCBCS
T ss_pred CCCCccCCCcccCCCCceeEEECCcccCcccC--------ChhhCCCcCC
Confidence 3479999998773 112333446778888886 5888877775
No 179
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=48.24 E-value=11 Score=23.62 Aligned_cols=39 Identities=26% Similarity=0.513 Sum_probs=27.5
Q ss_pred CccccccccccCCCceEEeCCCCccCccChhhhhccCccccccccccccC
Q psy7279 74 AQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQHCPLCRNAVSVG 123 (195)
Q Consensus 74 ~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 123 (195)
..|+.|-+.+.. .. +..-+..||..|+ .|-.|+..+...
T Consensus 16 ~~C~~C~~~I~~--~~-v~a~~~~~H~~CF--------~C~~C~~~L~~~ 54 (80)
T 1x3h_A 16 PKCGGCNRPVLE--NY-LSAMDTVWHPECF--------VCGDCFTSFSTG 54 (80)
T ss_dssp CBCTTTCCBCCS--SC-EEETTEEECTTTC--------BCSSSCCBSCSS
T ss_pred CccccCCCeecc--ee-EEECCCeEecCcC--------ChhhCCCCCCCC
Confidence 479999988773 22 2345678888886 588898887543
No 180
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=48.19 E-value=12 Score=23.63 Aligned_cols=38 Identities=24% Similarity=0.550 Sum_probs=27.2
Q ss_pred CCccccccccccCCCceEEeCCCCccCccChhhhhccCccccccccccc
Q psy7279 73 AAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQHCPLCRNAVS 121 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 121 (195)
...|+.|-+.+. + . .+..-+..||..|+ .|-.|+..|.
T Consensus 15 ~~~C~~C~~~I~-~-~-~~~a~~~~~H~~CF--------~C~~C~~~L~ 52 (81)
T 1x6a_A 15 GEFCHGCSLLMT-G-P-FMVAGEFKYHPECF--------ACMSCKVIIE 52 (81)
T ss_dssp SCBCTTTCCBCC-S-C-CBCCTTCCBCTTSC--------BCTTTCCBCC
T ss_pred CCcCccCCCCcC-c-e-EEEECCceeccccC--------CccCCCCccC
Confidence 347999999877 2 2 23345788998886 5888988874
No 181
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=47.09 E-value=12 Score=25.95 Aligned_cols=28 Identities=21% Similarity=0.425 Sum_probs=12.4
Q ss_pred ccccccccccCCCceEEeCCCCccCccCh
Q psy7279 75 QCVICLAPFQPGEEVKELLCHHKFHSECL 103 (195)
Q Consensus 75 ~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci 103 (195)
.|+.|-..+...+..+ ..-+..||..|+
T Consensus 10 ~C~~C~~~I~~~e~~~-~a~~~~~H~~CF 37 (123)
T 2l3k_A 10 LCASCDKRIRAYEMTM-RVKDKVYHLECF 37 (123)
T ss_dssp CCSSSSCCCCTTCCCC-CCSSCCCCTTTC
T ss_pred cccCCCCeecCCceEE-EECCcccccccC
Confidence 4666666554322221 123445555553
No 182
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=47.08 E-value=9.2 Score=31.38 Aligned_cols=46 Identities=22% Similarity=0.385 Sum_probs=30.3
Q ss_pred CCCccccccccccCCCceEEe---CCC--CccCccChhhhhccCccccccccc
Q psy7279 72 PAAQCVICLAPFQPGEEVKEL---LCH--HKFHSECLEPWLRERQHCPLCRNA 119 (195)
Q Consensus 72 ~~~~C~IC~~~~~~~~~~~~l---~C~--H~Fh~~Ci~~wl~~~~~CP~Cr~~ 119 (195)
....|+||-..-... ++.. .=| +.+|..|-..|--....||.|-..
T Consensus 181 ~~~~CPvCGs~P~~s--~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 181 SRTLCPACGSPPMAG--MIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp TCSSCTTTCCCEEEE--EEEC----CCEEEEEETTTCCEEECCTTSCSSSCCC
T ss_pred cCCCCCCCCCcCcee--EEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCC
Confidence 367899998854311 1110 122 567777999998888899999665
No 183
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=46.83 E-value=13 Score=22.68 Aligned_cols=41 Identities=20% Similarity=0.554 Sum_probs=28.3
Q ss_pred CCccccccccccCCCceEEeCCCCccCccChhhhhccCcccccccccccc
Q psy7279 73 AAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQHCPLCRNAVSV 122 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 122 (195)
...|+.|-+.+...+.. ...-+..||..|+ .|-.|+..+..
T Consensus 5 ~~~C~~C~~~I~~~~~~-~~a~~~~~H~~CF--------~C~~C~~~L~~ 45 (72)
T 1x4k_A 5 SSGCQECKKTIMPGTRK-MEYKGSSWHETCF--------ICHRCQQPIGT 45 (72)
T ss_dssp CCCBSSSCCCCCSSSCE-EEETTEEEETTTT--------CCSSSCCCCCS
T ss_pred CCCCccCCCcccCCceE-EEECcCeecccCC--------cccccCCccCC
Confidence 34799999988754333 2335678888886 58888877754
No 184
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=46.71 E-value=12 Score=23.43 Aligned_cols=30 Identities=17% Similarity=0.404 Sum_probs=22.7
Q ss_pred CCccccccccccCCCceEEeCC-CCccCccChhhh
Q psy7279 73 AAQCVICLAPFQPGEEVKELLC-HHKFHSECLEPW 106 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l~C-~H~Fh~~Ci~~w 106 (195)
..-|.||.++- ..+.+.| +-.||..|....
T Consensus 8 ~pWC~ICneDA----tlrC~gCdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 8 LPWCCICNEDA----TLRCAGCDGDLYCARCFREG 38 (67)
T ss_dssp CSSCTTTCSCC----CEEETTTTSEEECSSHHHHH
T ss_pred CCeeEEeCCCC----eEEecCCCCceehHHHHHHH
Confidence 45799999972 5666779 788999997653
No 185
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=46.62 E-value=13 Score=23.50 Aligned_cols=40 Identities=18% Similarity=0.497 Sum_probs=28.3
Q ss_pred CCccccccccccCCCceEEeCCCCccCccChhhhhccCccccccccccccC
Q psy7279 73 AAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQHCPLCRNAVSVG 123 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 123 (195)
...|+.|-..+.. . ....-+..||..|+ .|..|+..|...
T Consensus 15 ~~~C~~C~~~I~~--~-~~~a~~~~~H~~CF--------~C~~C~~~L~~~ 54 (81)
T 2dlo_A 15 LEKCATCSQPILD--R-ILRAMGKAYHPGCF--------TCVVCHRGLDGI 54 (81)
T ss_dssp CCBCTTTCCBCCS--C-CEEETTEEECTTTC--------BCSSSCCBCTTS
T ss_pred CCccccCCCeecc--e-eEEECCccccHHhc--------CcccCCCccCCC
Confidence 4579999988772 2 33346778898886 588998887543
No 186
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=45.47 E-value=12 Score=22.89 Aligned_cols=36 Identities=22% Similarity=0.535 Sum_probs=23.3
Q ss_pred CccccccccccCCCce--EEe-C--CCCccCccChhhhhcc
Q psy7279 74 AQCVICLAPFQPGEEV--KEL-L--CHHKFHSECLEPWLRE 109 (195)
Q Consensus 74 ~~C~IC~~~~~~~~~~--~~l-~--C~H~Fh~~Ci~~wl~~ 109 (195)
..|+-|...++..+.- .+. . |++.||..|...|-..
T Consensus 7 k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~~ 47 (60)
T 1wd2_A 7 KECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPH 47 (60)
T ss_dssp CCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGGG
T ss_pred eECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcccC
Confidence 3688887776643222 222 2 7888999998888643
No 187
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=45.44 E-value=5.8 Score=20.55 Aligned_cols=12 Identities=25% Similarity=0.614 Sum_probs=8.7
Q ss_pred cccccccccccc
Q psy7279 111 QHCPLCRNAVSV 122 (195)
Q Consensus 111 ~~CP~Cr~~~~~ 122 (195)
..||+|+...+.
T Consensus 4 ~~CpvCk~q~Pd 15 (28)
T 2jvx_A 4 FCCPKCQYQAPD 15 (28)
T ss_dssp EECTTSSCEESS
T ss_pred ccCccccccCcC
Confidence 469999887643
No 188
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=45.05 E-value=11 Score=23.34 Aligned_cols=42 Identities=24% Similarity=0.548 Sum_probs=28.2
Q ss_pred CCccccccccccC-C-CceEEeCCCCccCccChhhhhccCcccccccccccc
Q psy7279 73 AAQCVICLAPFQP-G-EEVKELLCHHKFHSECLEPWLRERQHCPLCRNAVSV 122 (195)
Q Consensus 73 ~~~C~IC~~~~~~-~-~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 122 (195)
...|+-|-..+.. + .......=+..||..|+ .|-.|+..+..
T Consensus 15 ~~~C~~C~~~I~~~g~~~~~~~a~~~~~H~~CF--------~C~~C~~~L~~ 58 (77)
T 2egq_A 15 AKKCAGCKNPITGFGKGSSVVAYEGQSWHDYCF--------HCKKCSVNLAN 58 (77)
T ss_dssp CCCCSSSCCCCCCCSSCCCEEEETTEEEETTTC--------BCSSSCCBCTT
T ss_pred CccCcccCCcccCCCCCceeEEECcceeCcccC--------EehhcCCCCCC
Confidence 3479999988773 1 11233345778888886 58889888754
No 189
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=44.66 E-value=9.6 Score=25.86 Aligned_cols=41 Identities=20% Similarity=0.446 Sum_probs=26.8
Q ss_pred CCccccccccccCCCceEEeCCCCccCccChhhhhccCccccccccccc
Q psy7279 73 AAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQHCPLCRNAVS 121 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 121 (195)
+..|++|..++... =++.+|..|-.. +.....||.|..++.
T Consensus 32 ~~~CP~Cq~eL~~~-------g~~~hC~~C~~~-f~~~a~CPdC~q~Le 72 (101)
T 2jne_A 32 ELHCPQCQHVLDQD-------NGHARCRSCGEF-IEMKALCPDCHQPLQ 72 (101)
T ss_dssp CCBCSSSCSBEEEE-------TTEEEETTTCCE-EEEEEECTTTCSBCE
T ss_pred cccCccCCCcceec-------CCEEECccccch-hhccccCcchhhHHH
Confidence 46899999887621 123346666543 344567999988874
No 190
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=41.72 E-value=14 Score=22.38 Aligned_cols=42 Identities=26% Similarity=0.626 Sum_probs=29.2
Q ss_pred CCccccccccccCCCceEEeCCCCccCccChhhhhccCccccccccccccC
Q psy7279 73 AAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQHCPLCRNAVSVG 123 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 123 (195)
...|+.|...+...+..+ ..=+..||..|+ .|-.|...+...
T Consensus 11 ~~~C~~C~~~i~~~e~~~-~~~~~~~H~~CF--------~C~~C~~~L~~~ 52 (72)
T 3f6q_B 11 SATCERCKGGFAPAEKIV-NSNGELYHEQCF--------VCAQCFQQFPEG 52 (72)
T ss_dssp TCBCTTTCCBCCTTCEEE-EETTEEEETTTS--------SCTTTCCCCGGG
T ss_pred CccchhcCccccCCceEE-EeCcCeeCcCCC--------cccCCCCCCCCC
Confidence 457999999887543332 235667888886 588888877543
No 191
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=38.00 E-value=13 Score=19.32 Aligned_cols=28 Identities=25% Similarity=0.549 Sum_probs=17.4
Q ss_pred CccccccccccCCCceEEeCCCCccCccCh
Q psy7279 74 AQCVICLAPFQPGEEVKELLCHHKFHSECL 103 (195)
Q Consensus 74 ~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci 103 (195)
..|+.|-..+...+... .=+..||..|+
T Consensus 4 ~~C~~C~k~Vy~~Ek~~--~~g~~~Hk~CF 31 (31)
T 1zfo_A 4 PNCARCGKIVYPTEKVN--CLDKFWHKACF 31 (31)
T ss_dssp CBCSSSCSBCCGGGCCC--SSSSCCCGGGC
T ss_pred CcCCccCCEEecceeEE--ECCeEecccCC
Confidence 46888888765332222 35677888774
No 192
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=37.63 E-value=6.8 Score=23.86 Aligned_cols=41 Identities=29% Similarity=0.686 Sum_probs=25.2
Q ss_pred CCccccccccccCCCceEEe-C--CC-CccCccChhhhhcc----Ccccccccc
Q psy7279 73 AAQCVICLAPFQPGEEVKEL-L--CH-HKFHSECLEPWLRE----RQHCPLCRN 118 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l-~--C~-H~Fh~~Ci~~wl~~----~~~CP~Cr~ 118 (195)
...| ||..... + ..+.- . |. ..||..|+. +.. +-.||.|+.
T Consensus 10 ~~~C-~C~~~~~-g-~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 10 PTYC-LCHQVSY-G-EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CEET-TTTEECC-S-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCEE-ECCCcCC-C-CEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 4467 8988632 2 33222 3 55 689999997 322 336999964
No 193
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=36.35 E-value=23 Score=23.13 Aligned_cols=10 Identities=40% Similarity=0.923 Sum_probs=5.2
Q ss_pred cccccccccc
Q psy7279 75 QCVICLAPFQ 84 (195)
Q Consensus 75 ~C~IC~~~~~ 84 (195)
.|+.|-+.+.
T Consensus 7 ~C~~C~~~I~ 16 (101)
T 2cup_A 7 GCVECRKPIG 16 (101)
T ss_dssp BCSSSCCBCC
T ss_pred cCcccCCccc
Confidence 4555555543
No 194
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=36.03 E-value=10 Score=20.54 Aligned_cols=11 Identities=27% Similarity=0.806 Sum_probs=7.2
Q ss_pred ccccccccccc
Q psy7279 111 QHCPLCRNAVS 121 (195)
Q Consensus 111 ~~CP~Cr~~~~ 121 (195)
..||+|.+.+.
T Consensus 6 FiCP~C~~~l~ 16 (34)
T 3mjh_B 6 FICPQCMKSLG 16 (34)
T ss_dssp EECTTTCCEES
T ss_pred cCCcHHHHHcC
Confidence 35888876653
No 195
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=34.99 E-value=8.1 Score=23.74 Aligned_cols=43 Identities=28% Similarity=0.610 Sum_probs=25.7
Q ss_pred CCccccccccccCCCceEEe-C--CC-CccCccChhhhh--ccCcccccccc
Q psy7279 73 AAQCVICLAPFQPGEEVKEL-L--CH-HKFHSECLEPWL--RERQHCPLCRN 118 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l-~--C~-H~Fh~~Ci~~wl--~~~~~CP~Cr~ 118 (195)
...| ||..... + ..+.- . |. ..||..|+.--- ..+-.||.|+.
T Consensus 11 ~~yC-~C~~~~~-g-~MI~CD~c~C~~~WfH~~Cvgl~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 11 PTYC-LCNQVSY-G-EMIGCDNEQCPIEWFHFSCVSLTYKPKGKWYCPKCRG 59 (62)
T ss_dssp CEET-TTTEECC-S-EEEECSCTTCSSCEEETGGGTCSSCCSSCCCCHHHHT
T ss_pred CcEE-ECCCCCC-C-CeeeeeCCCCCcccEecccCCcCcCCCCCEECcCccc
Confidence 4567 8988632 2 33332 3 55 799999987211 11346999965
No 196
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=34.84 E-value=21 Score=21.43 Aligned_cols=40 Identities=20% Similarity=0.512 Sum_probs=27.5
Q ss_pred ccccccccccCCCceEEeCCCCccC--ccChhhhhccCccccccccccccC
Q psy7279 75 QCVICLAPFQPGEEVKELLCHHKFH--SECLEPWLRERQHCPLCRNAVSVG 123 (195)
Q Consensus 75 ~C~IC~~~~~~~~~~~~l~C~H~Fh--~~Ci~~wl~~~~~CP~Cr~~~~~~ 123 (195)
.|+-|-+.+..++.. +..-+..|| ..|+ .|-.|+..+...
T Consensus 4 ~C~~C~~~I~~~~~~-v~a~~~~wH~~~~CF--------~C~~C~~~L~~~ 45 (65)
T 2iyb_E 4 VCQGCHNAIDPEVQR-VTYNNFSWHASTECF--------LCSCCSKCLIGQ 45 (65)
T ss_dssp ECTTTSSEECTTSCE-EEETTEEEETTTTTS--------BCTTTCCBCTTS
T ss_pred CCcCCCCeeccCceE-EEECCCccCCCCCCE--------ECCCCCCcCCCC
Confidence 688898887743232 233577888 8886 588888877543
No 197
>1loi_A Cyclic 3',5'-AMP specific phosphodiesterase RD1; hydrolase, C-AMP phosphodiesterase; NMR {Rattus norvegicus} SCOP: j.51.1.1
Probab=34.19 E-value=4.9 Score=19.72 Aligned_cols=12 Identities=42% Similarity=1.024 Sum_probs=9.2
Q ss_pred ccCccChhhhhc
Q psy7279 97 KFHSECLEPWLR 108 (195)
Q Consensus 97 ~Fh~~Ci~~wl~ 108 (195)
.||..|-..|+.
T Consensus 6 ffcetcskpwlv 17 (26)
T 1loi_A 6 FFCETCSKPWLV 17 (26)
T ss_dssp HHHHTSSCTTGG
T ss_pred HHHHhcCCchhh
Confidence 588888888864
No 198
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=33.36 E-value=34 Score=23.06 Aligned_cols=38 Identities=21% Similarity=0.455 Sum_probs=21.9
Q ss_pred CccccccccccCCCceEEeCCCCccCccChhhhhccCccccccccccc
Q psy7279 74 AQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQHCPLCRNAVS 121 (195)
Q Consensus 74 ~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 121 (195)
..|+-|-..+.. ...+..-+..||..|+ .|-.|+..|.
T Consensus 4 ~~C~~C~~~I~~--~~~~~a~~~~wH~~CF--------~C~~C~~~L~ 41 (114)
T 1j2o_A 4 LTCGGCQQNIGD--RYFLKAIDQYWHEDCL--------SCDLCGCRLG 41 (114)
T ss_dssp BCBSSSCSCBCS--SEEEECSSSEECTTTC--------CCSSSCSCCC
T ss_pred CCCcCCCCeeCC--cEEEEECchhHHHhcC--------cccccCCchh
Confidence 357777776652 2223335666777765 4666666554
No 199
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=30.23 E-value=21 Score=30.29 Aligned_cols=43 Identities=21% Similarity=0.395 Sum_probs=27.9
Q ss_pred CCccccccccccCCCceEEe--CCCCccCccChhhhhcc----------Ccccccccc
Q psy7279 73 AAQCVICLAPFQPGEEVKEL--LCHHKFHSECLEPWLRE----------RQHCPLCRN 118 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l--~C~H~Fh~~Ci~~wl~~----------~~~CP~Cr~ 118 (195)
+..|.+|-+.-. -...- .|...||..||..++.. .-.|=+|.-
T Consensus 93 ~~yCr~C~~Gg~---l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p 147 (386)
T 2pv0_B 93 QSYCSICCSGET---LLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLP 147 (386)
T ss_dssp BCSCTTTCCCSS---CEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSS
T ss_pred cccceEcCCCCe---EEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCC
Confidence 566777776421 22222 48899999999998732 225877853
No 200
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.49 E-value=36 Score=21.22 Aligned_cols=40 Identities=18% Similarity=0.495 Sum_probs=26.1
Q ss_pred CccccccccccCCCceEEeCCCCccCccChhhhhccCcccccccccccc
Q psy7279 74 AQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQHCPLCRNAVSV 122 (195)
Q Consensus 74 ~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 122 (195)
..|+.|-..+...+..+ ..=+..||..|+ .|-.|+..|..
T Consensus 16 ~~C~~C~~~I~~~~~~~-~a~~~~~H~~CF--------~C~~C~~~L~~ 55 (82)
T 2ehe_A 16 NTCAECQQLIGHDSREL-FYEDRHFHEGCF--------RCCRCQRSLAD 55 (82)
T ss_dssp CBCTTTCCBCCSSCCBC-CCSSCCCBTTTS--------BCTTTCCBCSS
T ss_pred CcCccCCCccccCcEEE-EeCCccccccCC--------eecCCCCccCC
Confidence 47888888876322222 224677888886 48888877753
No 201
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.46 E-value=38 Score=21.80 Aligned_cols=46 Identities=15% Similarity=0.393 Sum_probs=28.3
Q ss_pred CCCccccccccccC-CCceEEe-CCCCccCccChhhhhccCccccccc
Q psy7279 72 PAAQCVICLAPFQP-GEEVKEL-LCHHKFHSECLEPWLRERQHCPLCR 117 (195)
Q Consensus 72 ~~~~C~IC~~~~~~-~~~~~~l-~C~H~Fh~~Ci~~wl~~~~~CP~Cr 117 (195)
.+..|+.|.+.|.. .+..... .|+|..|..|-..-....-.|-+|-
T Consensus 24 ~~r~CarC~~~LG~l~~~g~~C~~Ck~rVC~~Crv~~~~~~W~C~VC~ 71 (76)
T 2csz_A 24 SDRTCARCQESLGRLSPKTNTCRGCNHLVCRDCRIQESNGTWRCKVCS 71 (76)
T ss_dssp CCCBCSSSCCBCSSSCTTTSEETTTTEECCTTSEEECSTTCEEEHHHH
T ss_pred CccchhhhCccccccccCCCcCcccChhhcccccccCCCCCEEEeeCc
Confidence 36789999998762 2233333 4999999988643222222466663
No 202
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=28.30 E-value=43 Score=24.22 Aligned_cols=46 Identities=11% Similarity=0.224 Sum_probs=25.3
Q ss_pred CCccccccccccCCCceEEeCCCCccCccChhhhhccCccccccccccccC
Q psy7279 73 AAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQHCPLCRNAVSVG 123 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 123 (195)
-..|..|...+... .. ..=+..||..|..+- ....|..|...|...
T Consensus 33 CF~C~~C~~~L~~~--~f-~~~g~~yC~~~y~~~--f~~~C~~C~~~I~~~ 78 (169)
T 2rgt_A 33 CLKCSDCHVPLAER--CF-SRGESVYCKDDFFKR--FGTKCAACQLGIPPT 78 (169)
T ss_dssp TSBCTTTCCBCCSC--CE-ESSSCEECHHHHHHH--HSCBCTTTCCBCCTT
T ss_pred cCccCCCCCcCCCC--Cc-ccCCeeeeccccccc--ccccccccccccCCC
Confidence 34666676666532 11 223455665554332 245688888877543
No 203
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=26.78 E-value=19 Score=26.66 Aligned_cols=32 Identities=28% Similarity=0.548 Sum_probs=23.8
Q ss_pred CCccccccccccCCCceEEe---CCCCccCccChhhhhc
Q psy7279 73 AAQCVICLAPFQPGEEVKEL---LCHHKFHSECLEPWLR 108 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l---~C~H~Fh~~Ci~~wl~ 108 (195)
+..|.||-+. ..+... .|...||..||..++.
T Consensus 79 ~~yC~wC~~G----g~l~~Cdn~~C~r~FC~~CI~~nvG 113 (159)
T 3a1b_A 79 QSYCTICCGG----REVLMCGNNNCCRCFCVECVDLLVG 113 (159)
T ss_dssp BSSCTTTSCC----SEEEECSSTTTCCEEEHHHHHHHTC
T ss_pred cceeeEecCC----CeEEeeCCCCCCCchhHHHHHHhcC
Confidence 6789999874 233333 3889999999998874
No 204
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=26.62 E-value=23 Score=22.13 Aligned_cols=19 Identities=26% Similarity=0.462 Sum_probs=12.3
Q ss_pred hhhhccCcccccccccccc
Q psy7279 104 EPWLRERQHCPLCRNAVSV 122 (195)
Q Consensus 104 ~~wl~~~~~CP~Cr~~~~~ 122 (195)
..|+..--.||.|+.++..
T Consensus 4 d~~LLeiL~CP~ck~~L~~ 22 (67)
T 2jny_A 4 DPQLLEVLACPKDKGPLRY 22 (67)
T ss_dssp CGGGTCCCBCTTTCCBCEE
T ss_pred CHHHHHHhCCCCCCCcCeE
Confidence 3455555678888887654
No 205
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=25.52 E-value=71 Score=23.35 Aligned_cols=29 Identities=21% Similarity=0.362 Sum_probs=15.7
Q ss_pred CCccccccccccCCCceEEeCCCCccCccCh
Q psy7279 73 AAQCVICLAPFQPGEEVKELLCHHKFHSECL 103 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci 103 (195)
...|..|-+.+.. ..++..-+..||..|+
T Consensus 60 ~~~C~~C~~~I~~--~~~~~a~~~~wH~~CF 88 (182)
T 2jtn_A 60 IPMCAGCDQHILD--RFILKALDRHWHSKCL 88 (182)
T ss_dssp CCBCBTSSSBCCC--SEEEEETTEEECSSTT
T ss_pred CCcCccCCCCccC--ceeEEecCCeEccccC
Confidence 4578888777662 2122224555665554
No 206
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=24.99 E-value=38 Score=25.09 Aligned_cols=40 Identities=20% Similarity=0.518 Sum_probs=28.0
Q ss_pred CCccccccccccCCCceEEeCCCCccCccChhhhhccCcccccccccccc
Q psy7279 73 AAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQHCPLCRNAVSV 122 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 122 (195)
...|+.|-..+..++.+. .-+..||..|+ .|-.|+..|..
T Consensus 115 ~~~C~~C~~~I~~~~~v~--a~~~~~H~~CF--------~C~~C~~~L~~ 154 (192)
T 1b8t_A 115 SDGCPRCGQAVYAAEKVI--GAGKSWHKSCF--------RCAKCGKSLES 154 (192)
T ss_dssp CEECTTTSCEECSSSCEE--ETTEEECTTTC--------BCTTTCCBCCS
T ss_pred CCcCCCCCCEecCcEEEe--cCCCccchhcC--------CccccCCCCCC
Confidence 456999999887543332 35778888886 58888777744
No 207
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A
Probab=24.57 E-value=30 Score=23.70 Aligned_cols=26 Identities=19% Similarity=0.253 Sum_probs=19.8
Q ss_pred CCccccccccccCCCceEEeCCCCccCcc
Q psy7279 73 AAQCVICLAPFQPGEEVKELLCHHKFHSE 101 (195)
Q Consensus 73 ~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~ 101 (195)
...|..|...- +....|.|+|++|.+
T Consensus 24 ~~~C~~C~~~~---~~W~CL~CG~vgCgr 49 (109)
T 3c5k_A 24 TQPCGDCGTIQ---ENWVCLSCYQVYCGR 49 (109)
T ss_dssp TCCCTTTCCCS---SEEEETTTCCEEECT
T ss_pred CCcCccccCCC---CeeeeeecCccccCC
Confidence 45799998763 367788899999753
No 208
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=24.55 E-value=14 Score=31.95 Aligned_cols=47 Identities=23% Similarity=0.488 Sum_probs=30.8
Q ss_pred ccccccccccCCCceEEeC-CCCccCccChhhhhc-----cCccccccccccc
Q psy7279 75 QCVICLAPFQPGEEVKELL-CHHKFHSECLEPWLR-----ERQHCPLCRNAVS 121 (195)
Q Consensus 75 ~C~IC~~~~~~~~~~~~l~-C~H~Fh~~Ci~~wl~-----~~~~CP~Cr~~~~ 121 (195)
...||...+..+...+... |...||..|+.---. ..-.||.|+....
T Consensus 6 ~yCiC~~~~d~~~~MIqCD~C~~WfH~~CVgi~~~~~~~~~~y~C~~C~~~~~ 58 (447)
T 3kv4_A 6 VYCLCRLPYDVTRFMIECDMCQDWFHGSCVGVEEEKAADIDLYHCPNCEVLHG 58 (447)
T ss_dssp EETTTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTEEECCCHHHHHHHC
T ss_pred eEEeCCCcCCCCCCeEEcCCCCcccccccCCcCcccccCCCEEECCCCccccC
Confidence 3448888764344555554 999999999853211 2347999987654
No 209
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=21.95 E-value=27 Score=21.97 Aligned_cols=17 Identities=24% Similarity=0.720 Sum_probs=11.1
Q ss_pred hhccCcccccccccccc
Q psy7279 106 WLRERQHCPLCRNAVSV 122 (195)
Q Consensus 106 wl~~~~~CP~Cr~~~~~ 122 (195)
|+..--.||.|+..+..
T Consensus 4 ~LLeiL~CP~ck~~L~~ 20 (69)
T 2pk7_A 4 KLLDILACPICKGPLKL 20 (69)
T ss_dssp CGGGTCCCTTTCCCCEE
T ss_pred HHHhheeCCCCCCcCeE
Confidence 44445568888877654
No 210
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=21.61 E-value=44 Score=24.21 Aligned_cols=25 Identities=28% Similarity=0.497 Sum_probs=15.6
Q ss_pred EEeCCCCccCccChhhhhccCcccccccccc
Q psy7279 90 KELLCHHKFHSECLEPWLRERQHCPLCRNAV 120 (195)
Q Consensus 90 ~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~ 120 (195)
....|+|.|-.. .....||.|...+
T Consensus 134 ~C~~Cg~~~~~~------~~~~~Cp~CG~~~ 158 (165)
T 2lcq_A 134 VCIGCGRKFSTL------PPGGVCPDCGSKV 158 (165)
T ss_dssp EESSSCCEESSC------CGGGBCTTTCCBE
T ss_pred ECCCCCCcccCC------CCCCcCCCCCCcc
Confidence 333488877532 2234799998765
No 211
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=20.48 E-value=32 Score=23.56 Aligned_cols=52 Identities=10% Similarity=-0.025 Sum_probs=29.0
Q ss_pred CccccccccccCCCceEEeCCCCccCccChhhhhccCccccccccccccCCC
Q psy7279 74 AQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQHCPLCRNAVSVGSI 125 (195)
Q Consensus 74 ~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~~~~ 125 (195)
..|..|...+..........=+..||..|..+.+..+..|-.|...|....+
T Consensus 33 F~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~~~~ 84 (122)
T 1m3v_A 33 LKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMGSGGDV 84 (122)
T ss_dssp HCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCCSSSCSSCCSCCEES
T ss_pred CCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCCccccCCCCcCchhe
Confidence 3566776666411011122245567777766655444479999888865433
No 212
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=20.44 E-value=53 Score=24.21 Aligned_cols=28 Identities=7% Similarity=0.188 Sum_probs=16.3
Q ss_pred CCccCccChhhhhccCcccccccccccc
Q psy7279 95 HHKFHSECLEPWLRERQHCPLCRNAVSV 122 (195)
Q Consensus 95 ~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 122 (195)
+..||..|-.+-+..+..|..|...|..
T Consensus 54 g~~yC~~cy~~~~~~~~~C~~C~~~I~~ 81 (188)
T 1rut_X 54 GMILCRNDYIRLFGNSGACSACGQSIPA 81 (188)
T ss_dssp TEEECHHHHHHHHSCCEECTTTCCEECT
T ss_pred CccccccccccccccCCccccCCCcccc
Confidence 4455555544433222269999988864
No 213
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=20.12 E-value=23 Score=21.26 Aligned_cols=18 Identities=28% Similarity=0.501 Sum_probs=11.6
Q ss_pred hhhccCcccccccccccc
Q psy7279 105 PWLRERQHCPLCRNAVSV 122 (195)
Q Consensus 105 ~wl~~~~~CP~Cr~~~~~ 122 (195)
.|+..--.||.|+..+..
T Consensus 5 ~~lL~iL~CP~c~~~L~~ 22 (56)
T 2kpi_A 5 AGLLEILACPACHAPLEE 22 (56)
T ss_dssp CSCTTSCCCSSSCSCEEE
T ss_pred HHHHhheeCCCCCCccee
Confidence 344445578888887654
Done!