RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7279
(195 letters)
>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa)
[TaxId: 4530]}
Length = 55
Score = 68.4 bits (167), Expect = 2e-16
Identities = 23/50 (46%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 74 AQCVICLAPFQPGEEVKELL-CHHKFHSECLEPWLRERQHCPLCRNAVSV 122
+C +CLA + GEE + L C H FH+EC++ WL CPLCR V V
Sbjct: 6 VECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVVV 55
>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine
herpesvirus 1 [TaxId: 10326]}
Length = 68
Score = 58.0 bits (140), Expect = 2e-12
Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Query: 71 APAAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQHCPLCRNAVS 121
A +C ICL L C H F C+ W+R+ CPLC+ V
Sbjct: 3 TVAERCPICLEDPS--NYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVE 51
>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF
ubiquitin ligase complex {Human (Homo sapiens) [TaxId:
9606]}
Length = 88
Score = 52.4 bits (125), Expect = 3e-10
Identities = 18/70 (25%), Positives = 25/70 (35%), Gaps = 15/70 (21%)
Query: 63 SIAFPADEAPAAQCVICLAPF---------------QPGEEVKELLCHHKFHSECLEPWL 107
++A A + C IC V +C+H FH C+ WL
Sbjct: 11 AVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWL 70
Query: 108 RERQHCPLCR 117
+ RQ CPL
Sbjct: 71 KTRQVCPLDN 80
>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId:
9606]}
Length = 79
Score = 50.0 bits (119), Expect = 2e-09
Identities = 14/47 (29%), Positives = 18/47 (38%), Gaps = 4/47 (8%)
Query: 76 CVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQH-CPLCRNAVS 121
C IC ++VK C H + CL W CP CR +
Sbjct: 26 CKICAEND---KDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIK 69
>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1
(RAG1), dimerization domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 86
Score = 46.8 bits (111), Expect = 4e-08
Identities = 17/63 (26%), Positives = 22/63 (34%), Gaps = 4/63 (6%)
Query: 66 FPADEAPAAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQH-CPLCRNAVSVGS 124
FPA + C IC + E C H F C+ L+ CP CR
Sbjct: 16 FPAHFVKSISCQICEHIL---ADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTD 72
Query: 125 ISS 127
+ S
Sbjct: 73 LES 75
>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens)
[TaxId: 9606]}
Length = 65
Score = 45.9 bits (108), Expect = 6e-08
Identities = 9/50 (18%), Positives = 15/50 (30%), Gaps = 3/50 (6%)
Query: 75 QCVICLAPFQPGEEVKELL--CHHKFHSECLEPWLRERQH-CPLCRNAVS 121
C C +K ++ C H C++ CP C +
Sbjct: 5 GCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLR 54
>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia
proto-oncoprotein PML {Human (Homo sapiens) [TaxId:
9606]}
Length = 56
Score = 44.5 bits (105), Expect = 2e-07
Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 6/55 (10%)
Query: 69 DEAPAAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQHCPLCRNAVSVG 123
+E +C C A + K L C H S CLE CP+C+ +G
Sbjct: 2 EEFQFLRCQQCQAEA---KCPKLLPCLHTLCSGCLEAS---GMQCPICQAPWPLG 50
>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 52
Score = 43.9 bits (103), Expect = 2e-07
Identities = 9/45 (20%), Positives = 17/45 (37%), Gaps = 2/45 (4%)
Query: 75 QCVICLAPFQPGEEV-KELLCHHKFHSECLEPWLRERQH-CPLCR 117
+C +C+ P + + C ++ C + CP CR
Sbjct: 2 ECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACR 46
>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 103
Score = 43.5 bits (102), Expect = 9e-07
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 6/54 (11%)
Query: 75 QCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQ---HCPLCRNAVSVGSI 125
+C ICL +E C H F C+ L +++ CPLC+N ++ S+
Sbjct: 23 ECPICLELI---KEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSL 73
>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain
{Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8
[TaxId: 37296]}
Length = 60
Score = 42.2 bits (98), Expect = 1e-06
Identities = 10/53 (18%), Positives = 15/53 (28%), Gaps = 4/53 (7%)
Query: 69 DEAPAAQCVICLAPFQPGEEV--KELLCHHKFHSECLEPWLRERQH--CPLCR 117
++ C IC H CL WL ++ C +C
Sbjct: 2 EDEDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICG 54
>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 114
Score = 41.6 bits (96), Expect = 6e-06
Identities = 11/62 (17%), Positives = 16/62 (25%), Gaps = 5/62 (8%)
Query: 75 QCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQH-----CPLCRNAVSVGSISSEN 129
+ P + C H FH CL CP C+ + +
Sbjct: 42 SDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKTGTQPW 101
Query: 130 GS 131
G
Sbjct: 102 GK 103
>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 56
Score = 36.7 bits (84), Expect = 1e-04
Identities = 8/47 (17%), Positives = 17/47 (36%), Gaps = 2/47 (4%)
Query: 76 CVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQHCPLCRNAVSV 122
C I + V F LE ++++ + P+ +S+
Sbjct: 3 CAISGKVPR--RPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSI 47
>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 94
Score = 37.4 bits (86), Expect = 1e-04
Identities = 9/55 (16%), Positives = 19/55 (34%), Gaps = 8/55 (14%)
Query: 71 APAAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQ--------HCPLCR 117
+ ++ C +CL + + C F + CL+ ++ CP
Sbjct: 3 SGSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAA 57
>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 97
Score = 35.9 bits (82), Expect = 4e-04
Identities = 8/51 (15%), Positives = 15/51 (29%), Gaps = 4/51 (7%)
Query: 75 QCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQHCPLCRNAVSVGSI 125
+C C + + C H F S C+ + C + +
Sbjct: 24 RCSRCTNILREPVCLGG--CEHIFCSNCVSDCIGTGCPV--CYTPAWIQDL 70
>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 70
Score = 33.4 bits (76), Expect = 0.002
Identities = 15/64 (23%), Positives = 24/64 (37%), Gaps = 4/64 (6%)
Query: 76 CVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQ----HCPLCRNAVSVGSISSENGS 131
IC +PG+ V C FH +C P L++ C LC + + +
Sbjct: 7 ATICRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLPDLKEEDVDLQA 66
Query: 132 SWLS 135
L+
Sbjct: 67 CKLN 70
>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription
factor, WSTF {Human (Homo sapiens) [TaxId: 9606]}
Length = 51
Score = 32.3 bits (73), Expect = 0.003
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 10/53 (18%)
Query: 74 AQCVICLAPFQPGEEVKELL---CHHKFHSECLEPWLRERQ----HCPLCRNA 119
A+C +C + GE+ K +L C+ FH CL P L E CP C+ A
Sbjct: 1 ARCKVC---RKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQPA 50
>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 64
Score = 31.2 bits (70), Expect = 0.011
Identities = 13/55 (23%), Positives = 20/55 (36%), Gaps = 6/55 (10%)
Query: 70 EAPAAQCVICLAPFQPGEE-VKELLCHHKFHSECLEPWLRERQ-----HCPLCRN 118
+ QC C + E + LC FH +C++ + CP C N
Sbjct: 3 SGSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSN 57
>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId:
9606]}
Length = 61
Score = 29.1 bits (65), Expect = 0.058
Identities = 15/52 (28%), Positives = 18/52 (34%), Gaps = 7/52 (13%)
Query: 76 CVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQ----HCPLCRNAVSVG 123
C +C GE + C +H CL P L E CP C G
Sbjct: 12 CRVC---KDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPALKG 60
>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 78
Score = 28.9 bits (64), Expect = 0.096
Identities = 5/44 (11%), Positives = 12/44 (27%), Gaps = 3/44 (6%)
Query: 75 QCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQHCPLCRN 118
+C I L ++ + + ++ WL
Sbjct: 10 RCPISLELM---KDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQ 50
>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 72
Score = 26.2 bits (57), Expect = 0.86
Identities = 9/52 (17%), Positives = 13/52 (25%), Gaps = 5/52 (9%)
Query: 78 ICLAPFQPGEE-VKELLCHHKFHSECLEPWLRERQ----HCPLCRNAVSVGS 124
C GE + C H+ C+ + C C S
Sbjct: 20 KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIELSGPSS 71
>d1gppa_ b.86.1.2 (A:) VMA1-derived endonuclease (VDE) PI-Scei
intein {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 229
Score = 27.6 bits (61), Expect = 0.87
Identities = 9/52 (17%), Positives = 17/52 (32%), Gaps = 6/52 (11%)
Query: 141 SHTDSYFFLTAEEFSDAEAFAEALVEAFPQVFPEDPIDWNAENGDTVSMHSQ 192
+ S + +E A E+ +A + +W E D + S
Sbjct: 127 EVSKS--YPVSEGPERANELVESYRKASN----KAYFEWTIEARDLSLLGSH 172
>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 88
Score = 26.3 bits (57), Expect = 0.88
Identities = 11/58 (18%), Positives = 24/58 (41%), Gaps = 14/58 (24%)
Query: 76 CVICLAPFQPGEEVKELL----CHHKFHSECLEPWLRERQ--------HCPLCRNAVS 121
CV+C +L+ CH+ +H +C +P + +++ +C C +
Sbjct: 19 CVVCRQMTV--ASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMK 74
>d2fk4a1 g.90.1.1 (A:4-67) E6 oncoprotein {Human papillomavirus
type 16 [TaxId: 333760]}
Length = 64
Score = 24.7 bits (54), Expect = 2.3
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 76 CVICLAPFQPGEEVKELLCHHKFH 99
C+ C P P E+ + L +FH
Sbjct: 23 CINCQKPLSPEEKQRHLDKKQRFH 46
>d1nxia_ d.58.47.1 (A:) Hypothetical protein VC0424 {Vibrio cholerae
[TaxId: 666]}
Length = 132
Score = 24.4 bits (53), Expect = 6.9
Identities = 9/41 (21%), Positives = 17/41 (41%), Gaps = 2/41 (4%)
Query: 147 FFLTAEEFSDAEAFAEALVEAFPQVFPEDPIDWNAENGDTV 187
L AE+F E A + +V + + E+G+ +
Sbjct: 43 HHLFAEDFDKLEKAAVEAFKMGFEV--LEAEETEDEDGNKL 81
>d1v6ga2 g.39.1.3 (A:42-81) Actin-binding LIM protein 2, abLIM2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 40
Score = 22.6 bits (48), Expect = 9.7
Identities = 10/23 (43%), Positives = 13/23 (56%), Gaps = 4/23 (17%)
Query: 76 CVICLAPFQPGEEV----KELLC 94
C +C PF PG+ V KE +C
Sbjct: 3 CAVCRLPFPPGDRVTFNGKECMC 25
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.133 0.421
Gapped
Lambda K H
0.267 0.0510 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 745,573
Number of extensions: 33605
Number of successful extensions: 155
Number of sequences better than 10.0: 1
Number of HSP's gapped: 144
Number of HSP's successfully gapped: 32
Length of query: 195
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 114
Effective length of database: 1,295,466
Effective search space: 147683124
Effective search space used: 147683124
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.6 bits)