Query psy7286
Match_columns 204
No_of_seqs 188 out of 676
Neff 5.2
Searched_HMMs 46136
Date Fri Aug 16 22:49:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7286.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7286hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1726|consensus 100.0 5.5E-42 1.2E-46 294.8 16.2 151 6-158 1-155 (225)
2 PF03134 TB2_DP1_HVA22: TB2/DP 100.0 2.8E-30 6.1E-35 194.0 11.5 93 4-98 2-94 (94)
3 KOG1725|consensus 100.0 2E-29 4.2E-34 212.0 8.5 109 2-112 53-161 (186)
4 COG5052 YOP1 Protein involved 99.8 5.4E-21 1.2E-25 159.6 11.0 103 9-113 61-164 (186)
5 KOG1726|consensus 67.1 26 0.00056 30.9 7.1 75 32-108 96-170 (225)
6 PRK06553 lipid A biosynthesis 38.1 2.9E+02 0.0062 24.5 9.7 72 35-116 19-91 (308)
7 KOG4304|consensus 26.9 1.5E+02 0.0032 26.4 5.3 62 81-142 22-92 (250)
8 CHL00186 psaI photosystem I su 26.9 53 0.0011 21.1 1.8 22 1-22 1-22 (36)
9 PF14975 DUF4512: Domain of un 26.4 37 0.00079 25.8 1.2 13 88-100 13-25 (88)
10 PF03988 DUF347: Repeat of Unk 23.5 92 0.002 21.1 2.7 22 39-60 1-22 (55)
11 KOG0365|consensus 20.4 47 0.001 31.5 0.9 17 34-50 97-113 (423)
No 1
>KOG1726|consensus
Probab=100.00 E-value=5.5e-42 Score=294.78 Aligned_cols=151 Identities=36% Similarity=0.678 Sum_probs=144.4
Q ss_pred HHHHHHHHHHhHhHHHHHHHHhhc--CChhhhhhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHhcCCC
Q psy7286 6 LCRLITFGLGTLYPGYASYKALKF--NDTPALLHWLTYWIVSALFLTFTEIFLDLFLGFWFPFYYEIKIIFILWLIYPAT 83 (204)
Q Consensus 6 l~rll~~liG~lYPaY~S~KaLk~--~~~~e~~~WL~YWiVfa~~~~f~E~~~d~~l~~wiPfYy~lKllfliWL~~P~t 83 (204)
+++++++++|++||||+|||++++ ++.+++++|++||||||++++ +|+++|.++ +|+|||+++|++|++||++|.|
T Consensus 1 ~~~~lv~v~G~~yPAy~tyKavk~~~~~i~el~~W~~YWIv~A~~t~-~e~~~d~~l-sw~P~Y~e~Kl~fv~wL~~p~t 78 (225)
T KOG1726|consen 1 MIRLLVLVFGYAYPAYATYKAVKSNRKDIRELLRWMMYWIVFAALTV-FETLTDFLL-SWFPFYSEFKLAFVIWLLSPAT 78 (225)
T ss_pred CeehHHHHHHHHhHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHH-HHHHHHHHH-HHhhhHHHHHHHHHhhcccccc
Confidence 367899999999999999999999 778899999999999999999 999999999 8999999999999999999999
Q ss_pred CcHHHHHHHhhhhhhccChhHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhc-ccchhhhc-cccccccc
Q psy7286 84 RGSKFIYREFLHPMLIKCEVDIDEFVDTCTRDGFSAVSDLGWTIVDVVIKKLKEANVRQ-TPLYQKWN-SCSIETLE 158 (204)
Q Consensus 84 ~GA~~IY~~~I~P~L~~~E~~ID~~l~~~k~~~~~~~~~~g~~~l~~a~~~~~~~a~~~-~~~~~~~~-~~s~~~~~ 158 (204)
+|+.+||++|+||++++||++||+++.++|++.++++++++++++|++...+.+++.+. +.+++|++ +++|+|+.
T Consensus 79 ~G~~~vY~~f~~p~ls~~E~eid~~l~~~k~~~~~~a~~~~~r~l~~~~~~~~~a~~~~~~~~tp~~~~~~~~~~~~ 155 (225)
T KOG1726|consen 79 KGASYVYRKFLRPFLSKHEEEIDRMLVEAKERVYDAAVSILKRALNYAQTYALEAAVFSQGQLTPRLQRSSSDQDLT 155 (225)
T ss_pred CccHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccchhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999996 58899975 99998774
No 2
>PF03134 TB2_DP1_HVA22: TB2/DP1, HVA22 family; InterPro: IPR004345 This family includes members from a wide variety of eukaryotes. It includes the TB2/DP1 (deleted in polyposis) protein which in human is deleted in severe forms of familial adenomatous polyposis, an autosomal dominant oncological inherited disease. The family also includes the plant protein of known similarity to TB2/DP1, the HVA22 abscisic acid-induced protein (e.g. Q07764 from SWISSPROT), which is thought to be a regulatory protein.
Probab=99.97 E-value=2.8e-30 Score=193.98 Aligned_cols=93 Identities=48% Similarity=1.008 Sum_probs=90.3
Q ss_pred hhHHHHHHHHHHhHhHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHhcCCC
Q psy7286 4 YSLCRLITFGLGTLYPGYASYKALKFNDTPALLHWLTYWIVSALFLTFTEIFLDLFLGFWFPFYYEIKIIFILWLIYPAT 83 (204)
Q Consensus 4 ~~l~rll~~liG~lYPaY~S~KaLk~~~~~e~~~WL~YWiVfa~~~~f~E~~~d~~l~~wiPfYy~lKllfliWL~~P~t 83 (204)
+++++++++++|++||+|+|+|+++++++++.++||+||+++|++++ +|.+++.++ +|+|+|+++|++|++||.+|++
T Consensus 2 ~~~~~~l~~~i~~~yP~~~s~kal~~~~~~~~~~wL~YWiv~~~~~~-~e~~~~~~l-~~iP~y~~~K~~~~~wL~~p~~ 79 (94)
T PF03134_consen 2 GFIARLLCNLIGILYPAYKSFKALKSKDKKDLKQWLTYWIVYGLFTL-FESFLDFIL-SWIPFYYEFKLLFLVWLQLPQF 79 (94)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHH-ccCchHHHHHHHHHHHHHcCCC
Confidence 57889999999999999999999999999999999999999999999 999999999 8999999999999999999999
Q ss_pred CcHHHHHHHhhhhhh
Q psy7286 84 RGSKFIYREFLHPML 98 (204)
Q Consensus 84 ~GA~~IY~~~I~P~L 98 (204)
+||+++|+++++|++
T Consensus 80 ~Ga~~iy~~~i~P~~ 94 (94)
T PF03134_consen 80 QGAEYIYDKFIRPFL 94 (94)
T ss_pred CcHHHHHHHHccccC
Confidence 999999999999975
No 3
>KOG1725|consensus
Probab=99.96 E-value=2e-29 Score=211.97 Aligned_cols=109 Identities=38% Similarity=0.709 Sum_probs=102.4
Q ss_pred chhhHHHHHHHHHHhHhHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHhcC
Q psy7286 2 LPYSLCRLITFGLGTLYPGYASYKALKFNDTPALLHWLTYWIVSALFLTFTEIFLDLFLGFWFPFYYEIKIIFILWLIYP 81 (204)
Q Consensus 2 ~~~~l~rll~~liG~lYPaY~S~KaLk~~~~~e~~~WL~YWiVfa~~~~f~E~~~d~~l~~wiPfYy~lKllfliWL~~P 81 (204)
+...+.+++|+++|++||+|+|++|++++++.|+++||+||+|||++++ +|.+.+.++ +|+|+||++|++|++||++|
T Consensus 53 ~~g~~~~l~cn~ig~~yP~y~Sv~aIes~~k~dD~~wL~YWivys~lsl-ie~~~~~il-~~iP~y~~~K~~fl~~l~lP 130 (186)
T KOG1725|consen 53 LFGSGGPLLCNLIGFLYPAYASVKAIESPSKDDDTQWLTYWIVYSILSL-VEFFSVAIL-SWIPFYWYAKLIFLLWLVLP 130 (186)
T ss_pred HhcccHHHHHHHHHHHHHHHHHHHhhhCCCCcchHHHHHHHHHHHHHHH-HHHHHHHHH-HhchHHHHHHHHHHHHHhcc
Confidence 3445678999999999999999999999999999999999999999999 999999999 99999999999999999999
Q ss_pred CCCcHHHHHHHhhhhhhccChhHHHHHHHHh
Q psy7286 82 ATRGSKFIYREFLHPMLIKCEVDIDEFVDTC 112 (204)
Q Consensus 82 ~t~GA~~IY~~~I~P~L~~~E~~ID~~l~~~ 112 (204)
+++||.+||+++++|++.++..++|+..+..
T Consensus 131 ~~~Ga~~iY~~~vrp~~~~~~~~~~~~~~~~ 161 (186)
T KOG1725|consen 131 QFNGAAIIYNHIVRPFFLKHSREIDDIEDAN 161 (186)
T ss_pred CCCCceeeechhhhhhhhhhhhhhhhhhhcc
Confidence 9999999999999999999999999776643
No 4
>COG5052 YOP1 Protein involved in membrane traffic [Intracellular trafficking and secretion]
Probab=99.85 E-value=5.4e-21 Score=159.61 Aligned_cols=103 Identities=28% Similarity=0.498 Sum_probs=95.6
Q ss_pred HHHHHHHhHhHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHhcCCCCcHHH
Q psy7286 9 LITFGLGTLYPGYASYKALKFNDTPALLHWLTYWIVSALFLTFTEIFLDLFLGFWFPFYYEIKIIFILWLIYPATRGSKF 88 (204)
Q Consensus 9 ll~~liG~lYPaY~S~KaLk~~~~~e~~~WL~YWiVfa~~~~f~E~~~d~~l~~wiPfYy~lKllfliWL~~P~t~GA~~ 88 (204)
++.++.|+..|++.|.+++++.+..+.+|||+||+|+++.++ +|.+...++ +|+||||..|.+|++|+..|+|+||..
T Consensus 61 ilt~~~~~~lP~~~~l~a~~~~n~~dd~q~l~ywmV~~~lsa-ie~~s~~il-~~vP~Y~~~K~vFllw~~~prt~GA~~ 138 (186)
T COG5052 61 ILTNVAGFSLPAQLSLVAFYTLNFMDDTQLLTYWMVFGFLSA-IEKYSGAIL-SKVPFYWTLKNVFLLWLLLPRTEGARI 138 (186)
T ss_pred HHHHHHHHHccHHHHHHHHHcCCchhhHHHHHHHHHHHHHHH-HHHHHHHHH-HHhhHHHHHHHHHHHHHhccccCceee
Confidence 778899999999999999999999999999999999999999 999999999 999999999999999999999999999
Q ss_pred HHHHhhhhhhccChhH-HHHHHHHhh
Q psy7286 89 IYREFLHPMLIKCEVD-IDEFVDTCT 113 (204)
Q Consensus 89 IY~~~I~P~L~~~E~~-ID~~l~~~k 113 (204)
||++++.|++++|--+ ||+.+.+..
T Consensus 139 IY~~~i~p~~s~~~~~~IektV~~~~ 164 (186)
T COG5052 139 IYDDIIAPDVSDHGFRTIEKTVKNGT 164 (186)
T ss_pred eHHhhccccccHHHHHHHHHHHHhhc
Confidence 9999999999998765 666555443
No 5
>KOG1726|consensus
Probab=67.14 E-value=26 Score=30.94 Aligned_cols=75 Identities=9% Similarity=-0.095 Sum_probs=64.3
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHhcCCCCcHHHHHHHhhhhhhccChhHHHHH
Q psy7286 32 TPALLHWLTYWIVSALFLTFTEIFLDLFLGFWFPFYYEIKIIFILWLIYPATRGSKFIYREFLHPMLIKCEVDIDEF 108 (204)
Q Consensus 32 ~~e~~~WL~YWiVfa~~~~f~E~~~d~~l~~wiPfYy~lKllfliWL~~P~t~GA~~IY~~~I~P~L~~~E~~ID~~ 108 (204)
.++...=+.+|....++.. ++.+....+ +|-+.|-.=+..+..|...|..+++...++.-..|....+...+-+.
T Consensus 96 ~E~eid~~l~~~k~~~~~~-a~~~~~r~l-~~~~~~~~~a~~~~~~~~tp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (225)
T KOG1726|consen 96 HEEEIDRMLVEAKERVYDA-AVSILKRAL-NYAQTYALEAAVFSQGQLTPRLQRSSSDQDLTTIPEESGKKAPDLDV 170 (225)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHH-HHHHHHHHHHHHHHHHhcCccccchhhhhhhhcCccccccccCCccc
Confidence 3566778899999999999 888888888 99999999999999999999999999999999988877655544433
No 6
>PRK06553 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=38.06 E-value=2.9e+02 Score=24.50 Aligned_cols=72 Identities=19% Similarity=0.173 Sum_probs=38.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHH-HHHHhcCCCCcHHHHHHHhhhhhhccChhHHHHHHHHhh
Q psy7286 35 LLHWLTYWIVSALFLTFTEIFLDLFLGFWFPFYYEIKIIF-ILWLIYPATRGSKFIYREFLHPMLIKCEVDIDEFVDTCT 113 (204)
Q Consensus 35 ~~~WL~YWiVfa~~~~f~E~~~d~~l~~wiPfYy~lKllf-liWL~~P~t~GA~~IY~~~I~P~L~~~E~~ID~~l~~~k 113 (204)
...++.||++.+++.+ + +++|...-..++. +.|++.+..+....+-+++-.=+-.+.++++++...+.-
T Consensus 19 ~~~~~~~~l~~~l~~~---------~-~~LP~~~~~~~~~~l~~~~~~~~~rr~v~~~NL~~afPe~s~~e~~~i~~~~~ 88 (308)
T PRK06553 19 FAGWLVAQLVFGLLGL---------L-RLFPADKAINFFGRLARLIGPLLPRHRVALDNLRAAFPEKSEAEIEAIALGMW 88 (308)
T ss_pred HHHHHHHHHHHHHHHH---------H-HHCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 4555556655443333 4 7889887766553 344444422223455555443344556677776666554
Q ss_pred HhH
Q psy7286 114 RDG 116 (204)
Q Consensus 114 ~~~ 116 (204)
...
T Consensus 89 ~~~ 91 (308)
T PRK06553 89 DNL 91 (308)
T ss_pred HHH
Confidence 443
No 7
>KOG4304|consensus
Probab=26.90 E-value=1.5e+02 Score=26.38 Aligned_cols=62 Identities=19% Similarity=0.245 Sum_probs=44.8
Q ss_pred CCCCcHHHHHHHhhhhhhccC-hhHHHHHHHHhhHhHHHHHHHHHH--------HHHHHHHHHHHHHHhhc
Q psy7286 81 PATRGSKFIYREFLHPMLIKC-EVDIDEFVDTCTRDGFSAVSDLGW--------TIVDVVIKKLKEANVRQ 142 (204)
Q Consensus 81 P~t~GA~~IY~~~I~P~L~~~-E~~ID~~l~~~k~~~~~~~~~~g~--------~~l~~a~~~~~~~a~~~ 142 (204)
....+....|++.-+|+++++ -..|.+.|+++|+-+-+.+.+-+. ..+..+.+-+++-...+
T Consensus 22 ~~~~~~~~~~rk~~Kpl~EKkRRaRIN~~L~eLK~Li~e~~~~~~~~~sklEKAdILEltV~hL~~l~~~~ 92 (250)
T KOG4304|consen 22 DERSSKTRQYRKVRKPLLEKKRRARINRCLDELKDLIPEALKKDGQRHSKLEKADILELTVNHLRQLQRSQ 92 (250)
T ss_pred CCcchhhHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhccc
Confidence 345788999999999999885 568999999999988777655432 23566666555444443
No 8
>CHL00186 psaI photosystem I subunit VIII; Validated
Probab=26.86 E-value=53 Score=21.07 Aligned_cols=22 Identities=23% Similarity=0.368 Sum_probs=17.2
Q ss_pred CchhhHHHHHHHHHHhHhHHHH
Q psy7286 1 MLPYSLCRLITFGLGTLYPGYA 22 (204)
Q Consensus 1 M~~~~l~rll~~liG~lYPaY~ 22 (204)
|..+++-.+.+=++|.+.||..
T Consensus 1 m~as~LPsI~VPlVGlvfPai~ 22 (36)
T CHL00186 1 MTASNLPSILVPLVGLVFPAIA 22 (36)
T ss_pred CccccCchhHHhHHHHHHHHHH
Confidence 5566677778888999999964
No 9
>PF14975 DUF4512: Domain of unknown function (DUF4512)
Probab=26.44 E-value=37 Score=25.84 Aligned_cols=13 Identities=38% Similarity=1.035 Sum_probs=10.9
Q ss_pred HHHHHhhhhhhcc
Q psy7286 88 FIYREFLHPMLIK 100 (204)
Q Consensus 88 ~IY~~~I~P~L~~ 100 (204)
+||++||.|++-+
T Consensus 13 wIykkFlqP~i~~ 25 (88)
T PF14975_consen 13 WIYKKFLQPYIYP 25 (88)
T ss_pred HHHHHHHHHHHHH
Confidence 6899999998765
No 10
>PF03988 DUF347: Repeat of Unknown Function (DUF347) ; InterPro: IPR007136 This repeat is found as four tandem repeats in a family of bacterial membrane proteins. Each repeat contains two transmembrane regions and a conserved tryptophan.
Probab=23.55 E-value=92 Score=21.13 Aligned_cols=22 Identities=27% Similarity=0.419 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q psy7286 39 LTYWIVSALFLTFTEIFLDLFL 60 (204)
Q Consensus 39 L~YWiVfa~~~~f~E~~~d~~l 60 (204)
+.||+..-+.+.+-|+..|.+-
T Consensus 1 l~fW~a~ilt~~lGt~~~D~l~ 22 (55)
T PF03988_consen 1 LFFWIAKILTTTLGTTAGDFLS 22 (55)
T ss_pred CHHHHHHHHHHHhHHHHHHHHH
Confidence 4699999999987799998775
No 11
>KOG0365|consensus
Probab=20.37 E-value=47 Score=31.54 Aligned_cols=17 Identities=41% Similarity=0.935 Sum_probs=13.3
Q ss_pred hhhhHHHHHHHHHHHHH
Q psy7286 34 ALLHWLTYWIVSALFLT 50 (204)
Q Consensus 34 e~~~WL~YWiVfa~~~~ 50 (204)
.-+.||.|||+-++-..
T Consensus 97 ASR~Wm~YWil~sl~lL 113 (423)
T KOG0365|consen 97 ASRPWMCYWILNSLALL 113 (423)
T ss_pred cCcchhHHHHHHHHHHh
Confidence 45889999998776555
Done!