Query psy7286
Match_columns 204
No_of_seqs 188 out of 676
Neff 5.2
Searched_HMMs 29240
Date Fri Aug 16 22:49:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7286.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7286hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b1v_M Phosphatase and actin r 28.5 23 0.00079 21.1 1.2 20 178-197 7-26 (32)
2 3tj5_B Metavinculin, SCA-famil 17.3 15 0.0005 21.2 -1.2 8 151-158 14-21 (27)
3 1iie_A Protein (HLA-DR antigen 15.9 65 0.0022 22.8 1.7 25 23-47 32-60 (75)
4 4gc0_A D-xylose-proton symport 14.1 4.5E+02 0.015 22.0 6.9 14 73-86 456-469 (491)
5 3vlv_A ALGQ1; sugar binding pr 9.4 2.4E+02 0.0081 24.8 3.7 34 102-135 460-493 (502)
6 2zkr_y 60S ribosomal protein L 8.8 73 0.0025 24.9 0.0 57 95-151 75-131 (135)
7 2jo1_A Phospholemman; FXYD1, N 8.7 1E+02 0.0035 21.6 0.7 17 185-201 56-72 (72)
8 4hkr_A Calcium release-activat 8.4 6.5E+02 0.022 20.9 5.7 30 85-115 164-193 (214)
9 1jb0_I Photosystem 1 reaction 7.9 3.1E+02 0.011 16.8 2.6 18 5-22 9-26 (38)
10 1wgn_A UBAP1, ubiquitin associ 6.8 3.8E+02 0.013 18.2 2.9 31 9-39 22-54 (63)
No 1
>4b1v_M Phosphatase and actin regulator 1; structural protein, nucleotide-binding, transcription regula transcription, muscle protein, ATP-binding; HET: ATP LAB; 1.75A {Mus musculus}
Probab=28.48 E-value=23 Score=21.07 Aligned_cols=20 Identities=20% Similarity=0.476 Sum_probs=15.5
Q ss_pred hhhhhccCCCChhhhhhccc
Q psy7286 178 ETEKSLADETSDDEILRGGC 197 (204)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~ 197 (204)
..|+|.+-++|+.|-+|+|-
T Consensus 7 vlerkis~rqsreelikrgv 26 (32)
T 4b1v_M 7 ALERKISMRQSREELIKRGV 26 (32)
T ss_dssp HHHHHHHTCCCHHHHHHTTS
T ss_pred HHHHHHHhcccHHHHHHhhh
Confidence 44566778999999998863
No 2
>3tj5_B Metavinculin, SCA-family protein; cytoskeleton, epidemic typhus, spotted fever, alpha-HE bundle domain, protein-protein interactions; 1.99A {Rickettsia rickettsii}
Probab=17.28 E-value=15 Score=21.24 Aligned_cols=8 Identities=38% Similarity=0.248 Sum_probs=5.2
Q ss_pred cccccccc
Q psy7286 151 SCSIETLE 158 (204)
Q Consensus 151 ~~s~~~~~ 158 (204)
|.|||||-
T Consensus 14 S~sMQdLL 21 (27)
T 3tj5_B 14 SGSMQYLL 21 (27)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 45788763
No 3
>1iie_A Protein (HLA-DR antigens associated invariant chain); major histocompatibility complex, antigen processing, oligomerization, chaperonin; NMR {Homo sapiens} SCOP: a.109.1.1
Probab=15.94 E-value=65 Score=22.81 Aligned_cols=25 Identities=16% Similarity=0.513 Sum_probs=16.3
Q ss_pred HHHHhhcC-C---hhhhhhHHHHHHHHHH
Q psy7286 23 SYKALKFN-D---TPALLHWLTYWIVSAL 47 (204)
Q Consensus 23 S~KaLk~~-~---~~e~~~WL~YWiVfa~ 47 (204)
..|.||+. + =.....||.||.+|-+
T Consensus 32 NLk~LK~~m~~~dWk~FEsWM~~WLLFeM 60 (75)
T 1iie_A 32 NLRHLKNTMETIDWKVFESWMHHWLLFEM 60 (75)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcChhhHHhHHHHHHHHHHHHH
Confidence 44555543 2 2357899999998754
No 4
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=14.06 E-value=4.5e+02 Score=22.02 Aligned_cols=14 Identities=29% Similarity=0.869 Sum_probs=11.0
Q ss_pred HHHHHHhcCCCCcH
Q psy7286 73 IFILWLIYPATRGS 86 (204)
Q Consensus 73 lfliWL~~P~t~GA 86 (204)
++++|++.|.|+|=
T Consensus 456 ~i~~~~~~PETkg~ 469 (491)
T 4gc0_A 456 ALFMWKFVPETKGK 469 (491)
T ss_dssp HHHHHHHCCCCTTC
T ss_pred HHHHHheecCCCCC
Confidence 34578899999994
No 5
>3vlv_A ALGQ1; sugar binding protein, alginate; HET: MAW LGU; 1.50A {Sphingomonas SP} SCOP: c.94.1.1 PDB: 3vlu_A* 3vlw_A* 1y3n_A* 1y3p_A* 1y3q_A 1j1n_A* 1kwh_A
Probab=9.41 E-value=2.4e+02 Score=24.76 Aligned_cols=34 Identities=15% Similarity=0.088 Sum_probs=22.1
Q ss_pred hhHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHH
Q psy7286 102 EVDIDEFVDTCTRDGFSAVSDLGWTIVDVVIKKL 135 (204)
Q Consensus 102 E~~ID~~l~~~k~~~~~~~~~~g~~~l~~a~~~~ 135 (204)
++..|+++.+.++.+.+.++..-++..+.-.+.+
T Consensus 460 d~~~d~~v~~l~~~G~d~~~~~~q~~~d~~~~~~ 493 (502)
T 3vlv_A 460 EKTWNDYQQQLKNRGFYQVMIVMQKAYDRQYGGA 493 (502)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHC---
T ss_pred hhHHHHHHHHHHHCChHHHHHHHHHHHHHHHhhc
Confidence 4567888888888888887776666655433333
No 6
>2zkr_y 60S ribosomal protein L32; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=8.76 E-value=73 Score=24.92 Aligned_cols=57 Identities=7% Similarity=0.090 Sum_probs=0.0
Q ss_pred hhhhccChhHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhcc
Q psy7286 95 HPMLIKCEVDIDEFVDTCTRDGFSAVSDLGWTIVDVVIKKLKEANVRQTPLYQKWNS 151 (204)
Q Consensus 95 ~P~L~~~E~~ID~~l~~~k~~~~~~~~~~g~~~l~~a~~~~~~~a~~~~~~~~~~~~ 151 (204)
.+++..+-+++|..+-+-+...-+-+...|.+--....+.+.|-+++..-...||+|
T Consensus 75 ~~~lV~NvkeLe~Llm~n~~~aaeIah~Vs~kKR~~IverA~eL~IkV~N~~arl~~ 131 (135)
T 2zkr_y 75 RKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVTNPNARLRS 131 (135)
T ss_dssp ---------------------------------------------------------
T ss_pred eEEEeCCHHHHHHHhcCCCceEEEEecccccccHHHHHHHHHHhCCeeeCCccccch
Confidence 456677778888776655544445455556555555556666666666555666664
No 7
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=8.70 E-value=1e+02 Score=21.65 Aligned_cols=17 Identities=24% Similarity=0.231 Sum_probs=12.4
Q ss_pred CCCChhhhhhccccccc
Q psy7286 185 DETSDDEILRGGCDRSR 201 (204)
Q Consensus 185 ~~~~~~~~~~~~~~~~~ 201 (204)
|+-.-.++||+-|+|||
T Consensus 56 e~g~~~~~~~~~~~~~~ 72 (72)
T 2jo1_A 56 EEGTFRSSIRRLSTRRR 72 (72)
T ss_dssp TTSTHHHHHHHHHHCCC
T ss_pred ccccHHHHHHHHhhccC
Confidence 34455678999999886
No 8
>4hkr_A Calcium release-activated calcium channel protein; ORAI1, eukaryotic membrane protein, membran protein, ION channel, STIM, membrane; 3.35A {Drosophila melanogaster} PDB: 4hks_A
Probab=8.44 E-value=6.5e+02 Score=20.95 Aligned_cols=30 Identities=13% Similarity=0.136 Sum_probs=19.6
Q ss_pred cHHHHHHHhhhhhhccChhHHHHHHHHhhHh
Q psy7286 85 GSKFIYREFLHPMLIKCEVDIDEFVDTCTRD 115 (204)
Q Consensus 85 GA~~IY~~~I~P~L~~~E~~ID~~l~~~k~~ 115 (204)
-|-..|++.+..-...+.++|++. ++.+++
T Consensus 164 Fa~hFYrsL~~hk~e~~~~~i~el-~~~~~~ 193 (214)
T 4hkr_A 164 FAIHFYRSLVSHKYEVTVSGIREL-EMLKEQ 193 (214)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHH-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 366788888887777777777643 444433
No 9
>1jb0_I Photosystem 1 reaction centre subunit VIII; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.17.1 PDB: 3pcq_I*
Probab=7.85 E-value=3.1e+02 Score=16.83 Aligned_cols=18 Identities=17% Similarity=-0.031 Sum_probs=13.4
Q ss_pred hHHHHHHHHHHhHhHHHH
Q psy7286 5 SLCRLITFGLGTLYPGYA 22 (204)
Q Consensus 5 ~l~rll~~liG~lYPaY~ 22 (204)
++-.+.+=++|++.||..
T Consensus 9 ~LPsI~VPlVglvfPai~ 26 (38)
T 1jb0_I 9 FLPWIFIPVVCWLMPTVV 26 (38)
T ss_dssp THHHHHHHHHHTHHHHHH
T ss_pred hCChhhHhHHHHHHHHHH
Confidence 355667778999999864
No 10
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=6.85 E-value=3.8e+02 Score=18.24 Aligned_cols=31 Identities=16% Similarity=0.206 Sum_probs=23.5
Q ss_pred HHHHHHHhHhHHHHHHHHhhcC--ChhhhhhHH
Q psy7286 9 LITFGLGTLYPGYASYKALKFN--DTPALLHWL 39 (204)
Q Consensus 9 ll~~liG~lYPaY~S~KaLk~~--~~~e~~~WL 39 (204)
.+-.++++.|.--+..||||.. |.+....||
T Consensus 22 ~V~~LvsMGFs~~qA~kALKat~~NvErAaDWL 54 (63)
T 1wgn_A 22 CVETVVNMGYSYECVLRAMKKKGENIEQILDYL 54 (63)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHCSCHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 4667889999999999999964 455555555
Done!