Query psy7286
Match_columns 204
No_of_seqs 188 out of 676
Neff 5.2
Searched_HMMs 13730
Date Fri Aug 16 22:50:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7286.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/7286hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74g1 f.23.26.1 (G:9-35) Pet 46.5 6.9 0.0005 21.0 2.3 19 7-25 4-22 (27)
2 d1iiea_ a.109.1.1 (A:) Class I 16.4 29 0.0021 22.9 1.7 25 23-47 32-60 (75)
3 d1rzhh2 f.23.10.1 (H:11-35) Ph 14.5 70 0.0051 16.7 2.6 10 41-50 10-19 (26)
4 d1gnwa1 a.45.1.1 (A:86-211) Cl 6.7 2.9E+02 0.021 18.0 4.4 29 85-113 29-59 (126)
5 d2pila_ d.24.1.1 (A:) Pilin Gc 6.3 1.6E+02 0.012 18.9 2.8 18 9-26 12-29 (158)
6 d2i5nh2 f.23.10.1 (H:1-36) Pho 6.0 1.8E+02 0.013 15.9 2.2 14 35-48 18-31 (36)
7 d2fyuk1 f.23.15.1 (K:1-53) Sub 5.1 1.5E+02 0.011 17.9 1.7 26 39-67 21-48 (53)
8 d2h6fb1 a.102.4.3 (B:521-921) 5.1 1.3E+02 0.0094 24.9 1.8 17 34-50 78-94 (401)
9 d1m56d_ f.23.8.1 (D:) Bacteria 4.6 3.4E+02 0.025 15.5 3.6 23 56-79 16-38 (42)
10 d2f2ac1 a.137.12.1 (C:3-94) Gl 4.3 2.5E+02 0.019 17.6 2.6 33 164-199 50-82 (92)
No 1
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=46.50 E-value=6.9 Score=21.00 Aligned_cols=19 Identities=26% Similarity=0.403 Sum_probs=14.7
Q ss_pred HHHHHHHHHhHhHHHHHHH
Q psy7286 7 CRLITFGLGTLYPGYASYK 25 (204)
Q Consensus 7 ~rll~~liG~lYPaY~S~K 25 (204)
.-++..+.|+.|-||+.||
T Consensus 4 gli~~tl~glf~aayqqyk 22 (27)
T d2e74g1 4 GLVFATLGGLFYAAYQQYK 22 (27)
T ss_dssp HHHHHHHHHHHHHHHHHTT
T ss_pred eehHHHHHHHHHHHHHHhc
Confidence 3456677899999998876
No 2
>d1iiea_ a.109.1.1 (A:) Class II MHC-associated invariant chain ectoplasmic trimerization domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.37 E-value=29 Score=22.90 Aligned_cols=25 Identities=16% Similarity=0.513 Sum_probs=16.3
Q ss_pred HHHHhhcC-C---hhhhhhHHHHHHHHHH
Q psy7286 23 SYKALKFN-D---TPALLHWLTYWIVSAL 47 (204)
Q Consensus 23 S~KaLk~~-~---~~e~~~WL~YWiVfa~ 47 (204)
..|.||+. + =.....||.||.+|-+
T Consensus 32 NLk~LK~~M~~~dWk~FEsWM~~WLlFeM 60 (75)
T d1iiea_ 32 NLRHLKNTMETIDWKVFESWMHHWLLFEM 60 (75)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcchhhHHHHHHHHHHHHHHHH
Confidence 44555543 2 2357899999998754
No 3
>d1rzhh2 f.23.10.1 (H:11-35) Photosystem II reaction centre subunit H, transmembrane region {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=14.48 E-value=70 Score=16.73 Aligned_cols=10 Identities=30% Similarity=0.740 Sum_probs=6.5
Q ss_pred HHHHHHHHHH
Q psy7286 41 YWIVSALFLT 50 (204)
Q Consensus 41 YWiVfa~~~~ 50 (204)
+|+.|+++..
T Consensus 10 fw~ffalli~ 19 (26)
T d1rzhh2 10 FWIFLAGLIY 19 (26)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6777776554
No 4
>d1gnwa1 a.45.1.1 (A:86-211) Class phi GST {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=6.68 E-value=2.9e+02 Score=18.01 Aligned_cols=29 Identities=14% Similarity=0.157 Sum_probs=19.4
Q ss_pred cHHHHHHHhhhhhhc--cChhHHHHHHHHhh
Q psy7286 85 GSKFIYREFLHPMLI--KCEVDIDEFVDTCT 113 (204)
Q Consensus 85 GA~~IY~~~I~P~L~--~~E~~ID~~l~~~k 113 (204)
.+.++|++++.|... ..+..|++....++
T Consensus 29 ~~~l~~~~~~~p~~G~~~d~~~v~~~~~~l~ 59 (126)
T d1gnwa1 29 ASKLAFEQIFKSIYGLTTDEAVVAEEEAKLA 59 (126)
T ss_dssp HHHHHHHHTHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccccCCCCCHHHHHHHHHHHH
Confidence 456778899999763 34566666666554
No 5
>d2pila_ d.24.1.1 (A:) Pilin Gc {Neisseria gonorrhoeae [TaxId: 485]}
Probab=6.29 E-value=1.6e+02 Score=18.89 Aligned_cols=18 Identities=22% Similarity=0.482 Sum_probs=12.9
Q ss_pred HHHHHHHhHhHHHHHHHH
Q psy7286 9 LITFGLGTLYPGYASYKA 26 (204)
Q Consensus 9 ll~~liG~lYPaY~S~Ka 26 (204)
++..+.++.+|+|..+..
T Consensus 12 IIgILaaia~P~~~~~~~ 29 (158)
T d2pila_ 12 IVGILAAVALPAYQDYTA 29 (158)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 556677778888876644
No 6
>d2i5nh2 f.23.10.1 (H:1-36) Photosystem II reaction centre subunit H, transmembrane region {Rhodopseudomonas viridis [TaxId: 1079]}
Probab=6.04 E-value=1.8e+02 Score=15.90 Aligned_cols=14 Identities=36% Similarity=0.985 Sum_probs=9.2
Q ss_pred hhhHHHHHHHHHHH
Q psy7286 35 LLHWLTYWIVSALF 48 (204)
Q Consensus 35 ~~~WL~YWiVfa~~ 48 (204)
+.+||.-|.|.-++
T Consensus 18 yaqwlviwtvvlly 31 (36)
T d2i5nh2 18 YAQWLVIWTVVLLY 31 (36)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh
Confidence 56788877765444
No 7
>d2fyuk1 f.23.15.1 (K:1-53) Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=5.14 E-value=1.5e+02 Score=17.93 Aligned_cols=26 Identities=19% Similarity=0.339 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH--HhcccchhH
Q psy7286 39 LTYWIVSALFLTFTEIFLDL--FLGFWFPFY 67 (204)
Q Consensus 39 L~YWiVfa~~~~f~E~~~d~--~l~~wiPfY 67 (204)
+.+|--.|.... =.++|+ ++ .|+|+|
T Consensus 21 ~~~~G~a~gl~l--vy~TDWklil-~yvPyy 48 (53)
T d2fyuk1 21 ASLWGAVGAVGL--VWATDWRLIL-DWVPYI 48 (53)
T ss_dssp HHHHHHHHHHHH--HHHHTCHHHH-TSSSSC
T ss_pred hhhhhhhhheee--eeeehHHHHH-hhhhhh
Confidence 456655555554 245665 44 899987
No 8
>d2h6fb1 a.102.4.3 (B:521-921) Protein farnesyltransferase, beta-subunit {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.13 E-value=1.3e+02 Score=24.95 Aligned_cols=17 Identities=47% Similarity=0.905 Sum_probs=13.0
Q ss_pred hhhhHHHHHHHHHHHHH
Q psy7286 34 ALLHWLTYWIVSALFLT 50 (204)
Q Consensus 34 e~~~WL~YWiVfa~~~~ 50 (204)
.-+-||.||++-|+-.+
T Consensus 78 ~~r~~l~yw~l~~L~LL 94 (401)
T d2h6fb1 78 ASRPWLCYWILHSLELL 94 (401)
T ss_dssp TCHHHHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHHHc
Confidence 35789999998776554
No 9
>d1m56d_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=4.63 E-value=3.4e+02 Score=15.48 Aligned_cols=23 Identities=9% Similarity=0.187 Sum_probs=10.1
Q ss_pred HHHHhcccchhHHHHHHHHHHHHh
Q psy7286 56 LDLFLGFWFPFYYEIKIIFILWLI 79 (204)
Q Consensus 56 ~d~~l~~wiPfYy~lKllfliWL~ 79 (204)
.|.|+ .|.--...+-++++++|.
T Consensus 16 F~gFi-k~~t~~~i~~i~~liflA 38 (42)
T d1m56d_ 16 FAGFV-RMVTWAAVVIVAALIFLA 38 (42)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHH
Confidence 34444 444434444444555443
No 10
>d2f2ac1 a.137.12.1 (C:3-94) Glu-tRNAGln amidotransferase C subunit, GatC {Staphylococcus aureus [TaxId: 1280]}
Probab=4.31 E-value=2.5e+02 Score=17.64 Aligned_cols=33 Identities=21% Similarity=0.300 Sum_probs=19.5
Q ss_pred CCCCCCCccchhhHhhhhhccCCCChhhhhhccccc
Q psy7286 164 PGYPQDRGERVLREETEKSLADETSDDEILRGGCDR 199 (204)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (204)
|..-+....-++||+.. .+..++.++|.|....
T Consensus 50 p~~~~~~~~~~lReD~~---~~~~~~~~~l~naP~~ 82 (92)
T d2f2ac1 50 PTYHVLDLQNVLREDKA---IKGIPQELALKNAKET 82 (92)
T ss_dssp CCSCSSCCCCCCBCCCC---CCCCCHHHHHTTCSSE
T ss_pred CCccccccccCCCCCcC---CCCCCHHHHHHcCCcc
Confidence 33333333456788764 4556677888887654
Done!