RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7286
(204 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 34.6 bits (79), Expect = 0.019
Identities = 47/224 (20%), Positives = 72/224 (32%), Gaps = 77/224 (34%)
Query: 3 PYSLCRLITFGLGTLYPGYASY----KALKFNDTP----ALLHWLT---YWIVSALFLTF 51
P S C LI G+ L A Y K L F TP + L T +V+A+ +
Sbjct: 235 PIS-CPLI--GVIQL----AHYVVTAKLLGF--TPGELRSYLKGATGHSQGLVTAVAIAE 285
Query: 52 TEIFLDLFLGFWFPFYYEIKIIFILWLIYPATRGSKFIYREFLHPMLIKCEVDIDEFVDT 111
T W F+ I L + R + L P +++ ++ +E
Sbjct: 286 T--------DSWESFF-VSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNE---- 332
Query: 112 CTRDGFS----AVSDLGWTIVDVVIKKLKEANVRQTPLYQKWNSCSIETLEDTSLQ--P- 164
G ++S+L + V + + N P ++ I SL
Sbjct: 333 ----GVPSPMLSISNLT---QEQVQDYVNKTN-SHLPAGKQ---VEI------SLVNGAK 375
Query: 165 -----GYPQD-RG-ERVLREETEKSLADETSDDEILRGGCDRSR 201
G PQ G LR+ S G D+SR
Sbjct: 376 NLVVSGPPQSLYGLNLTLRKAKAPS-------------GLDQSR 406
Score = 31.6 bits (71), Expect = 0.19
Identities = 26/181 (14%), Positives = 52/181 (28%), Gaps = 68/181 (37%)
Query: 20 GYASYKALK---FNDTPALL--HWL-TYWIVSAL-----FLTFTEIFLDLFLGFWFPFYY 68
A+++ LK A H L Y +AL ++ L
Sbjct: 1740 EKAAFEDLKSKGLIPADATFAGHSLGEY---AALASLADVMSIE----SL---------- 1782
Query: 69 EIKIIFILWLIYPATRGSKFIYREF--------------LHPMLIK---CEVDIDEFVDT 111
++++F RG + ++P + + + V+
Sbjct: 1783 -VEVVFY--------RG-MTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVER 1832
Query: 112 -CTRDGF--SAVSD--LGWTIV--------DVVIKKLKEANVRQTPLYQKWNSCSIETLE 158
R G+ V+ V D V L +++ + + S S+E +E
Sbjct: 1833 VGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEVE 1892
Query: 159 D 159
Sbjct: 1893 G 1893
Score = 31.6 bits (71), Expect = 0.19
Identities = 17/91 (18%), Positives = 36/91 (39%), Gaps = 19/91 (20%)
Query: 110 DTCTRDGFSAVSDLGWTIVDVVIKKLKEANVRQTP-----LYQKWNSCSIETLEDTSLQP 164
D +D G++I+D+VI + + + +++ ET+ D L+
Sbjct: 1650 DNHFKD------TYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKT 1703
Query: 165 GYPQDRGERVLREETEKSLA-DETSDDEILR 194
E++ +E E S + S+ +L
Sbjct: 1704 -------EKIFKEINEHSTSYTFRSEKGLLS 1727
Score = 27.3 bits (60), Expect = 4.3
Identities = 24/130 (18%), Positives = 38/130 (29%), Gaps = 44/130 (33%)
Query: 8 RLIT-FG-----------LGTLYPGYASYKALKFNDTPALLHWLTYWIVSALFLTFTEIF 55
+L+ FG L LY +Y L V L E
Sbjct: 155 QLVAIFGGQGNTDDYFEELRDLY---QTYHVL----------------VGDLIKFSAETL 195
Query: 56 LDL-FLGFWFPFYYEIKIIFILWLIYPATRGSKFIYREFLH------PMLIKCEVDIDEF 108
+L + + + WL P+ K ++L P LI + + +
Sbjct: 196 SELIRTTLDAEKVFTQGLNILEWLENPSNTPDK----DYLLSIPISCP-LI-GVIQLAHY 249
Query: 109 VDTCTRDGFS 118
V T GF+
Sbjct: 250 VVTAKLLGFT 259
Score = 26.6 bits (58), Expect = 7.3
Identities = 13/45 (28%), Positives = 19/45 (42%), Gaps = 12/45 (26%)
Query: 153 SIET--LEDTSLQPGYPQDRGERVLREETEKSLADET----SDDE 191
S+E L T+ Q L+E+ K L + T +DDE
Sbjct: 15 SLEHVLLVPTASFFIASQ------LQEQFNKILPEPTEGFAADDE 53
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.9 bits (74), Expect = 0.061
Identities = 21/116 (18%), Positives = 31/116 (26%), Gaps = 37/116 (31%)
Query: 21 YASYKALKFNDTPALLHWLTYW---IV--------SALFLTFTEIFLDL-FLGFWFPFYY 68
Y K +D + Y+ I F +FLD FL
Sbjct: 453 YNIPKTFDSDD-LIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFL-------- 503
Query: 69 EIKIIF--ILWLIYPATRGSKF-------IYREFL---HPMLIKCEVDIDEFVDTC 112
E KI W GS Y+ ++ P + I +F+
Sbjct: 504 EQKIRHDSTAW----NASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKI 555
Score = 28.3 bits (62), Expect = 2.1
Identities = 17/112 (15%), Positives = 38/112 (33%), Gaps = 22/112 (19%)
Query: 95 HPMLIKCEVDIDEFV--DTCTRDGFSAV-SDLGWTIVDVVIKKLKEANVRQTPLYQKWNS 151
+P + I E + T D + V D TI++ + L+ A R+ ++
Sbjct: 326 NPRRLSI---IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRK--MFD---R 377
Query: 152 CSI---------ETLEDTSLQPGYPQDRGERVLREETEKSLADETSDDEILR 194
S+ L + + V+ + + SL ++ + +
Sbjct: 378 LSVFPPSAHIPTILLS--LIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS 427
>2x9z_A RRGB, cell WALL surface anchor family protein; cell adhesion;
1.30A {Streptococcus pneumoniae}
Length = 262
Score = 29.7 bits (66), Expect = 0.54
Identities = 5/24 (20%), Positives = 11/24 (45%)
Query: 10 ITFGLGTLYPGYASYKALKFNDTP 33
+ + + T P A+Y ++D
Sbjct: 34 VEYEIVTKIPALANYATANWSDRM 57
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.1 bits (64), Expect = 0.59
Identities = 10/31 (32%), Positives = 19/31 (61%), Gaps = 9/31 (29%)
Query: 132 IKKLKEANVRQTPLYQKWNSC---SIE-TLE 158
+KKL +A+++ LY +S +I+ T+E
Sbjct: 22 LKKL-QASLK---LYAD-DSAPALAIKATME 47
>2x9x_A RRGB, cell WALL surface anchor family protein; cell adhesion;
1.50A {Streptococcus pneumoniae} PDB: 2x9w_A 2x9y_A
Length = 444
Score = 28.3 bits (61), Expect = 2.0
Identities = 5/24 (20%), Positives = 11/24 (45%)
Query: 10 ITFGLGTLYPGYASYKALKFNDTP 33
+ + + T P A+Y ++D
Sbjct: 37 VEYEIVTKIPALANYATANWSDRM 60
>1k77_A EC1530, hypothetical protein YGBM; TIM barrel, structural genomics,
PSI, structure initiative; 1.63A {Escherichia coli}
SCOP: c.1.15.5
Length = 260
Score = 26.8 bits (59), Expect = 5.4
Identities = 10/44 (22%), Positives = 17/44 (38%), Gaps = 2/44 (4%)
Query: 102 EVDIDEFVDTCTRDGFSAVSDLGWTIVDV--VIKKLKEANVRQT 143
EV E + GF AV L + K+L++ ++
Sbjct: 14 EVPFIERFAAARKAGFDAVEFLFPYNYSTLQIQKQLEQNHLTLA 57
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase,
nuclease, double strand DNA repair, protein-DNA CO
hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus
subtilis} PDB: 3u44_B*
Length = 1166
Score = 27.0 bits (59), Expect = 5.8
Identities = 12/49 (24%), Positives = 18/49 (36%)
Query: 14 LGTLYPGYASYKALKFNDTPALLHWLTYWIVSALFLTFTEIFLDLFLGF 62
L LY A ++ + L L I A + I++D F F
Sbjct: 165 LSILYQQMEKSLADQYLHSEDYLTLLAEHIPLAEDIKGAHIYVDGFYQF 213
>3ngf_A AP endonuclease, family 2; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, TIM
barrel; 1.80A {Brucella melitensis biovar abortus}
Length = 269
Score = 26.4 bits (58), Expect = 5.9
Identities = 12/44 (27%), Positives = 17/44 (38%), Gaps = 2/44 (4%)
Query: 102 EVDIDEFVDTCTRDGFSAVSDLGWTIVDV--VIKKLKEANVRQT 143
EV E GF V L D + ++LK+ N+ Q
Sbjct: 22 EVPFLERFRLAAEAGFGGVEFLFPYDFDADVIARELKQHNLTQV 65
>3qbg_A Halorhodopsin; membrane protein, ION pump, retinal, membrane; HET:
RET BNG 22B; 1.80A {Natronomonas pharaonis} PDB: 3a7k_A*
3abw_A* 3qbi_A* 3qbk_A* 3qbl_A*
Length = 291
Score = 26.3 bits (57), Expect = 7.3
Identities = 17/83 (20%), Positives = 28/83 (33%), Gaps = 10/83 (12%)
Query: 5 SLCRLITFGLGTLYPGYASYKALKFNDTPALLHWLTYWIVSALFL-TFTEIFLDLFLGFW 63
L ITF + G A+ + L+ W Y I A F+ + ++
Sbjct: 148 KLFTAITFDIAMCVTGLAAA----LTTSSHLMRWFWYAISCACFIVVLYILLVEWAQDAK 203
Query: 64 -----FPFYYEIKIIFILWLIYP 81
F + ++WL YP
Sbjct: 204 AAGTADIFSTLKLLTVVMWLGYP 226
>3qap_A Sensory rhodopsin-2; phototaxis, nphtrii, membrane, transport
protein; HET: RET BOG LFA L2P; 1.90A {Natronomonas
pharaonis} PDB: 1gue_A* 1gu8_A* 1h68_A* 3qdc_A* 2f93_A*
2f95_A* 2ksy_A* 1h2s_A* 1jgj_A*
Length = 239
Score = 26.2 bits (57), Expect = 8.6
Identities = 12/83 (14%), Positives = 20/83 (24%), Gaps = 2/83 (2%)
Query: 1 MLPYSLCRLITFGLGTLYPGYASYKALKFNDTPALLHWLTYWIVSALFLTFTEIFLDLFL 60
+ +IT + G+A ++ +L
Sbjct: 93 LDSREFGIVITLNTVVMLAGFAGAMVPGIERYALFGMGAVAFLGLVYYLVGPMTESASQR 152
Query: 61 GFWFPFYYEI--KIIFILWLIYP 81
Y + ILW IYP
Sbjct: 153 SSGIKSLYVRLRNLTVILWAIYP 175
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.143 0.462
Gapped
Lambda K H
0.267 0.0519 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,287,209
Number of extensions: 189167
Number of successful extensions: 458
Number of sequences better than 10.0: 1
Number of HSP's gapped: 457
Number of HSP's successfully gapped: 21
Length of query: 204
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 115
Effective length of database: 4,216,824
Effective search space: 484934760
Effective search space used: 484934760
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.5 bits)