Query psy7288
Match_columns 518
No_of_seqs 278 out of 1255
Neff 6.0
Searched_HMMs 29240
Date Fri Aug 16 22:52:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7288.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7288hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ll2_A Glycogenin-1; protein-s 100.0 1.1E-65 3.9E-70 530.6 16.7 319 4-358 1-333 (333)
2 3u2u_A Glycogenin-1, GN-1, GN1 100.0 2E-51 6.8E-56 411.6 18.0 242 4-265 2-255 (263)
3 3tzt_A Glycosyl transferase fa 100.0 1.3E-31 4.3E-36 269.5 9.0 220 10-265 8-269 (276)
4 1g9r_A Glycosyl transferase; a 100.0 1E-29 3.5E-34 259.0 13.0 208 10-244 3-257 (311)
5 3kys_B YAP65, 65 kDa YES-assoc 97.3 0.0002 6.9E-09 62.4 4.3 93 148-265 18-123 (125)
6 2kxq_A E3 ubiquitin-protein li 95.5 0.0027 9.4E-08 52.9 0.5 82 270-362 7-88 (90)
7 1tk7_A CG4244-PB; WW domain, n 95.3 0.0014 4.9E-08 54.4 -1.9 80 268-360 8-87 (88)
8 2ysg_A Syntaxin-binding protei 94.7 0.0093 3.2E-07 42.3 1.3 30 269-298 4-33 (40)
9 2law_A Yorkie homolog; YAP, SM 94.7 0.0089 3E-07 41.9 1.1 29 270-298 4-32 (38)
10 2djy_A SMAD ubiquitination reg 94.5 0.01 3.6E-07 42.6 1.1 29 270-298 5-33 (42)
11 2kyk_A E3 ubiquitin-protein li 94.4 0.014 4.8E-07 41.0 1.6 28 270-297 4-31 (39)
12 2zaj_A Membrane-associated gua 94.4 0.012 4E-07 43.8 1.1 32 267-298 8-39 (49)
13 2l4j_A YES-associated protein 94.3 0.015 5E-07 42.6 1.5 30 269-298 8-37 (46)
14 2yse_A Membrane-associated gua 94.3 0.016 5.5E-07 44.9 1.7 31 268-298 9-39 (60)
15 2ysf_A E3 ubiquitin-protein li 94.2 0.013 4.4E-07 41.6 1.0 29 270-298 5-33 (40)
16 2jmf_A E3 ubiquitin-protein li 94.2 0.014 4.7E-07 44.1 1.2 31 268-298 14-44 (53)
17 1i5h_W Rnedd4, ubiquitin ligas 93.9 0.017 5.7E-07 43.1 1.1 30 269-298 8-37 (50)
18 2ez5_W Dnedd4, E3 ubiquitin-pr 93.9 0.017 5.8E-07 42.2 1.1 29 270-298 8-36 (46)
19 1wr4_A Ubiquitin-protein ligas 93.8 0.018 6.3E-07 39.4 1.1 27 271-297 3-29 (36)
20 1jmq_A YAP65, 65 kDa YES-assoc 93.7 0.036 1.2E-06 40.3 2.6 32 267-298 3-34 (46)
21 1wr3_A Ubiquitin-protein ligas 93.7 0.019 6.4E-07 39.5 1.0 27 271-297 3-29 (36)
22 2ysd_A Membrane-associated gua 93.6 0.02 6.9E-07 43.8 1.2 31 268-298 10-40 (57)
23 2ysb_A Salvador homolog 1 prot 93.6 0.022 7.4E-07 42.3 1.2 29 270-298 9-37 (49)
24 2kpz_A E3 ubiquitin-protein li 93.0 0.026 8.8E-07 41.8 0.9 29 270-298 10-38 (49)
25 1wr7_A NEDD4-2; all-beta, liga 93.0 0.028 9.7E-07 39.9 1.0 29 270-298 6-34 (41)
26 1wmv_A WWOX, WW domain contain 93.0 0.028 9.6E-07 42.6 1.0 29 270-298 9-37 (54)
27 2dwv_A Salvador homolog 1 prot 92.7 0.027 9.3E-07 41.8 0.7 28 271-298 12-39 (49)
28 1e0m_A Wwprototype; SH3 protot 92.4 0.059 2E-06 37.1 2.0 27 271-297 2-28 (37)
29 2dmv_A Itchy homolog E3 ubiqui 92.0 0.044 1.5E-06 39.3 1.0 29 270-298 5-33 (43)
30 2ysh_A GAS-7, growth-arrest-sp 90.2 0.14 4.9E-06 35.8 2.2 27 270-296 5-31 (40)
31 3l4h_A E3 ubiquitin-protein li 90.1 0.088 3E-06 45.5 1.2 31 268-298 68-98 (109)
32 2ysc_A Amyloid beta A4 precurs 88.8 0.11 3.8E-06 36.6 0.8 27 270-297 6-32 (39)
33 1ymz_A CC45; artificial protei 88.5 0.19 6.5E-06 35.8 1.9 27 271-297 7-33 (43)
34 3bcv_A Putative glycosyltransf 86.2 0.84 2.9E-05 42.3 5.4 95 1-113 1-100 (240)
35 2kxq_A E3 ubiquitin-protein li 85.9 0.27 9.4E-06 40.7 1.6 30 269-298 52-81 (90)
36 2ho2_A Fe65 protein, amyloid b 85.5 0.24 8.4E-06 34.7 1.0 26 271-297 2-27 (38)
37 1tk7_A CG4244-PB; WW domain, n 83.4 0.31 1.1E-05 40.1 0.9 28 270-297 54-81 (88)
38 1qg8_A Protein (spore coat pol 82.7 9.3 0.00032 35.4 11.1 98 7-113 3-104 (255)
39 3olm_A E3 ubiquitin-protein li 81.0 0.48 1.6E-05 50.1 1.4 32 267-298 3-34 (429)
40 1eg3_A Dystrophin; EF-hand lik 80.7 0.44 1.5E-05 47.1 1.0 28 271-298 10-37 (261)
41 2e45_A Fe65 protein, amyloid b 79.8 0.49 1.7E-05 35.8 0.7 31 267-298 14-44 (55)
42 3tc5_A Peptidyl-prolyl CIS-tra 75.6 0.71 2.4E-05 42.5 0.7 32 267-298 4-36 (166)
43 2jv4_A Peptidyl-prolyl CIS/tra 74.1 1.7 5.8E-05 32.6 2.3 26 271-296 6-32 (54)
44 2d7i_A Polypeptide N-acetylgal 71.4 6 0.00021 42.7 6.9 100 5-118 112-218 (570)
45 3ckj_A Putative uncharacterize 69.5 19 0.00065 35.5 9.6 101 5-118 48-154 (329)
46 3l4h_A E3 ubiquitin-protein li 69.0 0.16 5.6E-06 43.8 -4.9 62 272-363 45-106 (109)
47 1o6w_A PRP40, PRE-mRNA process 68.6 0.29 1E-05 38.8 -3.2 72 275-362 2-73 (75)
48 1fo8_A Alpha-1,3-mannosyl-glyc 68.2 11 0.00037 38.5 7.6 105 8-115 5-117 (343)
49 3f1y_A Mannosyl-3-phosphoglyce 66.3 15 0.00051 37.8 8.3 95 6-109 95-191 (387)
50 2z86_A Chondroitin synthase; G 60.6 43 0.0015 35.8 11.0 94 6-113 94-190 (625)
51 2z86_A Chondroitin synthase; G 58.6 11 0.00036 40.7 5.7 92 4-113 374-470 (625)
52 1o6w_A PRP40, PRE-mRNA process 53.3 2.5 8.7E-05 33.3 -0.3 25 273-297 41-65 (75)
53 2ffu_A Ppgalnact-2, polypeptid 52.0 61 0.0021 33.8 10.2 92 6-113 67-162 (501)
54 1xhb_A Polypeptide N-acetylgal 51.8 24 0.00082 36.4 6.9 95 5-113 29-130 (472)
55 2l5f_A PRE-mRNA-processing fac 51.6 5.6 0.00019 32.8 1.6 74 270-359 9-82 (92)
56 2p6w_A VP54, putative glycosyl 41.6 43 0.0015 31.6 6.0 68 83-151 53-136 (213)
57 2ysi_A Transcription elongatio 39.5 14 0.00048 25.8 1.8 26 270-295 5-30 (40)
58 1s4n_A Glycolipid 2-alpha-mann 32.4 1.7E+02 0.0058 29.9 9.2 115 4-119 26-168 (348)
59 2jx8_A Hpcif1, phosphorylated 32.2 8.1 0.00028 28.6 -0.4 25 272-296 10-35 (52)
60 1ywi_A Formin-binding protein 28.5 19 0.00067 25.1 1.1 26 270-295 7-32 (41)
61 2jxw_A WW domain-binding prote 24.4 29 0.00099 27.2 1.5 25 271-295 42-66 (75)
62 2l5f_A PRE-mRNA-processing fac 24.3 22 0.00075 29.1 0.8 25 273-297 53-77 (92)
63 1e0l_A Formin binding protein; 24.2 40 0.0014 22.8 2.1 24 272-295 3-26 (37)
64 2gak_A Beta-1,6-N-acetylglucos 22.9 4.8E+02 0.016 26.5 10.9 103 5-119 84-194 (391)
65 2jxw_A WW domain-binding prote 22.5 35 0.0012 26.7 1.7 71 272-358 2-72 (75)
66 1o7q_A N-acetyllactosaminide a 22.4 1.2E+02 0.0041 30.2 5.8 20 96-115 137-156 (289)
67 1e0n_A Hypothetical protein; Y 22.3 32 0.0011 21.9 1.2 20 275-295 1-20 (27)
No 1
>1ll2_A Glycogenin-1; protein-substrate complex, beta-alpha-beta rossman-like NUCL binding fold, DXD motif, non-proline CIS peptide bond, TRAN; HET: UPG; 1.90A {Oryctolagus cuniculus} SCOP: c.68.1.14 PDB: 1ll3_A 1ll0_A 1zcv_A 1zcu_A 1zdf_A* 1zcy_A 1zdg_A*
Probab=100.00 E-value=1.1e-65 Score=530.63 Aligned_cols=319 Identities=39% Similarity=0.628 Sum_probs=208.4
Q ss_pred CCCEEEEEEecChhhHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHhcCCeEEEEeeeCCCchhhhcccCCCch
Q psy7288 4 VTGTAWVTLATNDSYALGALVVANSLKRVNTVHDLAILITPGVTLAMKNELLKVFNFVKEVDVFDSRDETNLRLLSRPDL 83 (518)
Q Consensus 4 ~~~~A~VTl~tnd~Yl~ga~VL~~SLr~~~s~~~lvvLvt~~vs~~~r~~L~~~~~~v~~V~~l~~~d~~~l~~~~rp~~ 83 (518)
++++||||+++|++|+.|++|+++||++++++++++||++++++++.++.|++.++.++.|+.++..+..++..+.++++
T Consensus 1 Ms~~a~vt~~~d~~Yl~~a~vl~~SL~~~~s~~~l~vlv~~~is~~~~~~L~~~~~~v~~v~~l~~~~~~~~~~~~~~~~ 80 (333)
T 1ll2_A 1 MTDQAFVTLTTNDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVFDEVITVDILDSGDSAHLTLMKRPEL 80 (333)
T ss_dssp CCSEEEEEEESSHHHHHHHHHHHHHHHHTTCCSEEEEEECTTSCHHHHHHHHHHCSEEEECCTTSTTSTTHHHHHHCGGG
T ss_pred CCceEEEEEEeCHHHHHHHHHHHHHHHHhCCCCCEEEEEcCCCCHHHHHHHHHhCCEEEEEeecCCcchhhcccccccch
Confidence 47899999999999999999999999999999999999999999999999999999999988877655455554556777
Q ss_pred hhhhHhHhhhhccCcCeEEEecCCeEEcCCChhhhCCCCcccccCCCCCCCCCceEEEEeCChHHHHHHHHHHHhcCCCC
Q psy7288 84 GITFTKIHAWRLTQYSKCVFLDADVLIVQNCDELFDREELSAAPDAGWPDCFNSGVFVFKPSESTYNALVEFALVNGSFD 163 (518)
Q Consensus 84 ~~tftKL~~w~L~eydKVVYLDaD~LVl~nIDeLF~~~elaAapD~gwp~~FNSGVmVi~Ps~~~~~~Ll~~~~~~~s~d 163 (518)
..+|+||++|.|++|+||||||+|+||++|||+||+++.++|++|.||++|||||||||+|+..++++|++++.++++++
T Consensus 81 ~~t~~Kl~i~~l~~ydrvlYLDaD~lv~~di~eLf~~~~~aAv~d~~~~~~fNsGvmlin~~~~~~~~l~~~~~~~~~~~ 160 (333)
T 1ll2_A 81 GVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFEREELSAAPDPGWPDCFNSGVFVYQPSVETYNQLLHVASEQGSFD 160 (333)
T ss_dssp HHHHHHGGGGGCTTCSEEEEECTTEEECSCCGGGGGSCSSEEEECSSSTTSEEEEEEEECCCHHHHHHHHHHHHHTCCTT
T ss_pred HHHHHHHHHhHhcCCCeEEEEeCCEEeccCHHHHhCCCceeEEecCCCCcceeeeEEEEeCCHHHHHHHHHHHHhcCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999888999
Q ss_pred cCccccccccccCCCCCcccCCCCCCCCCCCCCccccCCCCCCCCcccccccccccc----cccCCCceEEcccCCCCCC
Q psy7288 164 DATRQLQKPLNMRNLPKSFFQPPSTGSRSPSVSSISHSRENSADSAFGTSTITSTSS----SVSGGGLQIAHPRAHSSPA 239 (518)
Q Consensus 164 ~~DQdl~~pL~mr~lpN~~F~~~~~~di~p~~~~i~~Lr~~s~p~~YN~~~~~~y~y----~~~~~~~kIiHf~g~~KPW 239 (518)
++|||+ | |.+|.+|...++. ..| |++||++....|.+ ..+..+++||||+|..|||
T Consensus 161 ~~DQ~~---L------N~~f~~~~~~~~~------~~L-----p~~yN~~~~~~~~~~p~~~~~~~~~~IiHf~g~~KPW 220 (333)
T 1ll2_A 161 GGDQGL---L------NTFFNSWATTDIR------KHL-----PFIYNLSSISIYSYLPAFKAFGANAKVVHFLGQTKPW 220 (333)
T ss_dssp SSHHHH---H------HHHTTTTTTSCGG------GBC-----CGGGSEETTHHHHTHHHHHHHGGGCSEEECCSSCCGG
T ss_pred CCCHHH---H------HHHHHhhcccCcc------ccC-----CcHHhcccccchhccHHHHhhcCCCEEEEECCCCCCC
Confidence 999999 9 9999988533332 567 99999997654544 2346789999999999999
Q ss_pred Cccccc----h--hhhhhh--hhHHHhhhhhhhcccc--cCCCCCCCCccccccccceeeecccchhhHHHhhhHhhhhc
Q psy7288 240 SLQQTY----A--SAQQQH--QQHLKQRSYDITTVLD--ELGPLPPGWEQARTAEGQVYYLKGVLFMYTRLQAGLARALA 309 (518)
Q Consensus 240 ~~~~~~----~--~~~~~~--~~~~~~~WWdi~~~l~--e~~~l~~gwe~a~t~~g~~y~~~~~~~~~~~~~~~~a~~~s 309 (518)
...... . ..+..+ |..++++||++|+..- -+.+. +............+++++++
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~WW~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~ 284 (333)
T 1ll2_A 221 NYTYDTKTKSVRSEGHDPTMTHPQFLNVWWDIFTTSVVPLLQQF----------------GLVQDTCSYQHVEDVSGAVS 284 (333)
T ss_dssp GSCEETTTTEEC--------CCHHHHHHHHHHHHHTHHHHHTC-------------------------------------
T ss_pred CCCCCCCccccccccccccccHHHHHHHHHHHHHhhcccccchh----------------hccCCCCCccchhhhhhhhh
Confidence 875221 1 011111 4689999999995311 00000 00000011123466899999
Q ss_pred cccCCCCCCCcccccchhhcccccccCCCCCcCchhhHHHHHHhhhccC
Q psy7288 310 QVPIGTPISAEQLAYEDHIHRQHWEEGHIDYLGKDSWDNIWKKISQTIE 358 (518)
Q Consensus 310 q~~i~~~~~~~~~~~ee~~rr~~WE~G~iDYmG~dsf~nIqkKld~~L~ 358 (518)
|+++++..++++...++++||++||+|||||||+|||||||||||+||+
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~we~g~~dy~g~d~f~~i~~kl~~~l~ 333 (333)
T 1ll2_A 285 HLSLGETPATTQPFVSSEERKERWEQGQADYMGADSFDNIKKKLDTYLQ 333 (333)
T ss_dssp -------------------------------------------------
T ss_pred ccccccccCccCCCCCcHHHHHHHhccCCccccchhHHHHHHHHHHhhC
Confidence 9999975555555456777799999999999999999999999999995
No 2
>3u2u_A Glycogenin-1, GN-1, GN1; structural genomics, structural genomics consortium, SGC, transferase, glycosyltransferase, glycogen biosynthesis; HET: GLC UDP; 1.45A {Homo sapiens} SCOP: c.68.1.14 PDB: 3t7n_A* 3t7o_A* 3t7m_A* 3u2v_A* 3u2x_A* 3u2t_A 3rmv_A* 3rmw_A* 3u2w_A* 3qvb_A* 3q4s_A* 1zct_A* 3v8y_A 3v8z_A* 3usr_A 3v90_A 3v91_A* 3usq_A
Probab=100.00 E-value=2e-51 Score=411.56 Aligned_cols=242 Identities=45% Similarity=0.715 Sum_probs=213.6
Q ss_pred CCCEEEEEEecChhhHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHhcCCeEEEEeeeCCCchhhhcccCCCch
Q psy7288 4 VTGTAWVTLATNDSYALGALVVANSLKRVNTVHDLAILITPGVTLAMKNELLKVFNFVKEVDVFDSRDETNLRLLSRPDL 83 (518)
Q Consensus 4 ~~~~A~VTl~tnd~Yl~ga~VL~~SLr~~~s~~~lvvLvt~~vs~~~r~~L~~~~~~v~~V~~l~~~d~~~l~~~~rp~~ 83 (518)
++++|||||++|++|++||+||++||++++++++++||++++++++.++.|++.|+.++.|+.++..+..++..+.++++
T Consensus 2 ~~~~AyvTl~td~~Yl~ga~vL~~SL~~~~s~~~lvvLvt~~vs~~~~~~L~~~~~~vi~V~~l~~~~~~~~~~~~rp~~ 81 (263)
T 3u2u_A 2 MTDQAFVTLTTNDAYAKGALVLGSSLKQHRTTRRLVVLATPQVSDSMRKVLETVFDEVIMVDVLDSGDSAHLTLMKRPEL 81 (263)
T ss_dssp TTTEEEEEEESSHHHHHHHHHHHHHHHHTTCCSEEEEEECTTSCHHHHHHHHHHSSEEEECCCCCCCCHHHHHHTTCTTG
T ss_pred CcceEEEEEEECHHHHHHHHHHHHHHHHhCCCCCEEEEecCCCCHHHHHHHHHcCCeEEEeeecCCcchhhhhhhcCcch
Confidence 57999999999999999999999999999999999999999999999999999999999999888766666666778889
Q ss_pred hhhhHhHhhhhccCcCeEEEecCCeEEcCCChhhhCCCCcccccCCCCCCCCCceEEEEeCChHHHHHHHHHHHhcCCCC
Q psy7288 84 GITFTKIHAWRLTQYSKCVFLDADVLIVQNCDELFDREELSAAPDAGWPDCFNSGVFVFKPSESTYNALVEFALVNGSFD 163 (518)
Q Consensus 84 ~~tftKL~~w~L~eydKVVYLDaD~LVl~nIDeLF~~~elaAapD~gwp~~FNSGVmVi~Ps~~~~~~Ll~~~~~~~s~d 163 (518)
..+|+||++|+|++|+||||||+|+||++|||+||+++.++|++|.||++|||||||||+|+..++++|++++.+.++++
T Consensus 82 ~~~~~kl~~~~l~~~~~vlylD~D~~v~~~~~~Lf~~~~~aA~~d~~~~~~fNsGv~li~p~~~~~~~l~~~~~~~~~~~ 161 (263)
T 3u2u_A 82 GVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFDREELSAAPDPGWPDCFNSGVFVYQPSVETYNQLLHLASEQGSFD 161 (263)
T ss_dssp GGGGGGGGGGGCTTCSEEEEECTTEEECSCCGGGGGSCSSEEEECTTSTTSEEEEEEEECCCHHHHHHHHHHHHHHCCTT
T ss_pred hHHhHHHHhccccCcceEEEEcCCEeeccCHHHHhCCCcceEeccCCCCccccCeEEEEcccHHHHHHHHHHHHhcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999888999
Q ss_pred cCccccccccccCCCCCcccCCCCCCCCCCCCCccccCCCCCCCCcccccccccccc----cccCCCceEEcccCCCCCC
Q psy7288 164 DATRQLQKPLNMRNLPKSFFQPPSTGSRSPSVSSISHSRENSADSAFGTSTITSTSS----SVSGGGLQIAHPRAHSSPA 239 (518)
Q Consensus 164 ~~DQdl~~pL~mr~lpN~~F~~~~~~di~p~~~~i~~Lr~~s~p~~YN~~~~~~y~y----~~~~~~~kIiHf~g~~KPW 239 (518)
++|||+ | |.+|.+|...+. ++.| |++||++....|.| ..+..+++||||+|..|||
T Consensus 162 ~~DQd~---L------N~~f~~w~~~~~------~~~L-----p~~yN~~~~~~y~~~~~~~~~~~~~~IIHf~g~~KPW 221 (263)
T 3u2u_A 162 GGDQGI---L------NTFFSSWATTDI------RKHL-----PFIYNLSSISIYSYLPAFKVFGASAKVVHFLGRVKPW 221 (263)
T ss_dssp SSHHHH---H------HHHTTTTTTSCG------GGBC-----CGGGSEEHHHHHSSHHHHHHHGGGCSEEECCSSSCGG
T ss_pred cccHHH---H------HHHhccccccCe------eEeC-----CcccccccchhccccHHHHhhcCCeEEEEECCCCcCC
Confidence 999999 9 999999864333 2678 99999998665554 2346889999999999999
Q ss_pred Cccc----cchhhh----hhhhhHHHhhhhhhhc
Q psy7288 240 SLQQ----TYASAQ----QQHQQHLKQRSYDITT 265 (518)
Q Consensus 240 ~~~~----~~~~~~----~~~~~~~~~~WWdi~~ 265 (518)
+... +..... ...|.++.++||++|.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ww~~~~ 255 (263)
T 3u2u_A 222 NYTYDPKTKSVKSEAHDPNMTHPEFLILWWNIFT 255 (263)
T ss_dssp GSEEETTTTEEECCSSCGGGSSTHHHHHHHHHHH
T ss_pred CCCCCCCCCcccccCCCcchhHHHHHHHHHHHHH
Confidence 8732 211111 1235899999999993
No 3
>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} SCOP: c.68.1.0
Probab=99.97 E-value=1.3e-31 Score=269.48 Aligned_cols=220 Identities=14% Similarity=0.171 Sum_probs=154.4
Q ss_pred EEEecChhhHHHHHHHHHHHHhhCCCCeEEE-EECCCCCHHHHHHHHhc----CCeEEEEeeeCCCchhhhcccCCCchh
Q psy7288 10 VTLATNDSYALGALVVANSLKRVNTVHDLAI-LITPGVTLAMKNELLKV----FNFVKEVDVFDSRDETNLRLLSRPDLG 84 (518)
Q Consensus 10 VTl~tnd~Yl~ga~VL~~SLr~~~s~~~lvv-Lvt~~vs~~~r~~L~~~----~~~v~~V~~l~~~d~~~l~~~~rp~~~ 84 (518)
|++++|++|+.|+.|+++||++|+++.++.+ +++++++++.++.|+.. +.++..+.+ +......+....+ ...
T Consensus 8 I~~~~d~~Y~~~~~v~i~Sl~~~~~~~~~~~~il~~~is~~~~~~L~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~-~s~ 85 (276)
T 3tzt_A 8 LLLTLDENYIPQMKVLMTSIYINNPGRIFDVYLIHSRISEDKLKDLGEDLKKFSYTLYPIRA-TDDLFSFAKVTDR-YPK 85 (276)
T ss_dssp EEEECCGGGHHHHHHHHHHHHHHSTTCCEEEEEEESCCCHHHHHHHHHHHHTTTCEEEEEEC-C--------------CH
T ss_pred EEEEeCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCHHHHHHHHHHHHHcCCEEEEEEe-CHHHHhcCccccc-cCH
Confidence 4488999999999999999999998655543 45679999998888764 455554443 2111111111111 125
Q ss_pred hhhHhHhhhhcc--CcCeEEEecCCeEEcCCChhhhCCC----CcccccCCCCC---------------CCCCceEEEEe
Q psy7288 85 ITFTKIHAWRLT--QYSKCVFLDADVLIVQNCDELFDRE----ELSAAPDAGWP---------------DCFNSGVFVFK 143 (518)
Q Consensus 85 ~tftKL~~w~L~--eydKVVYLDaD~LVl~nIDeLF~~~----elaAapD~gwp---------------~~FNSGVmVi~ 143 (518)
.+|+||+++.+. +|+||||||+|+||++||++||+++ .++|++|.++. .|||||||||+
T Consensus 86 ~~~~rl~~~~l~p~~~~kvlylD~D~iv~~di~~L~~~dl~~~~~aav~d~~~~~~~~~~~~~~l~~~~~yfNsGV~lin 165 (276)
T 3tzt_A 86 EMYYRLLAGEFLPENLGEILYLDPDMLVINPLDDLLRTDISDYILAAASHTGKTDMANNVNRIRLGTDTDYYNSGLLLIN 165 (276)
T ss_dssp HHHHHHTHHHHSCTTCCEEEEECSSEEECSCSHHHHTCCCTTSSEEEEEC--------------------CEEEEEEEEE
T ss_pred HHHHHHHHHHHcccccCeEEEEeCCeeecCCHHHHhhcCCCCCeEEEEEecccchHHHHHHHhcCCCCCCeEEeeEEEEE
Confidence 789999999985 6999999999999999999999986 48888886532 79999999999
Q ss_pred CChHHH----HHHHHHHHhcC-CCCcCccccccccccCCCCCcccCCCCCCCCCCCCCccccCCCCCCCC-ccccccccc
Q psy7288 144 PSESTY----NALVEFALVNG-SFDDATRQLQKPLNMRNLPKSFFQPPSTGSRSPSVSSISHSRENSADS-AFGTSTITS 217 (518)
Q Consensus 144 Ps~~~~----~~Ll~~~~~~~-s~d~~DQdl~~pL~mr~lpN~~F~~~~~~di~p~~~~i~~Lr~~s~p~-~YN~~~~~~ 217 (518)
++.++. +++++++.+.. ++.++|||+ | |.+|.+.. +.| |. +||++....
T Consensus 166 l~~~R~~~~~~~~~~~~~~~~~~~~~~DQd~---L------N~~f~~~~-----------~~L-----p~~~wN~~~~~~ 220 (276)
T 3tzt_A 166 LKRAREEIDPDEIFSFVEDNHMNLLLPDQDI---L------NAMYGDRI-----------YPL-----DDLIYNYDARNY 220 (276)
T ss_dssp HHHHHHHCCHHHHHHHHHHC--------CHH---H------HHHHGGGE-----------EEE-----EHHHHSEETTCH
T ss_pred HHHHHhhhHHHHHHHHHHhccccccCCChhH---H------HHHHhCCE-----------EEC-----Cchheeeecccc
Confidence 998764 55666666653 677999999 9 99998742 688 98 899987432
Q ss_pred ccc----------cccCCCceEEcccCCCCCCCccccchhhhhhhhhHHHhhhhhhhc
Q psy7288 218 TSS----------SVSGGGLQIAHPRAHSSPASLQQTYASAQQQHQQHLKQRSYDITT 265 (518)
Q Consensus 218 y~y----------~~~~~~~kIiHf~g~~KPW~~~~~~~~~~~~~~~~~~~~WWdi~~ 265 (518)
..| ....++++||||+|..|||+.... ..+...||.+..
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~iiHy~g~~KPW~~~~~---------~~~~~~w~~Y~~ 269 (276)
T 3tzt_A 221 SSYLIRSKKQADLAWLMDHTVVLHFCGRDKPWKKNHR---------NKFTSLYKHYMS 269 (276)
T ss_dssp HHHHHHTTTCCSHHHHHHHCCEEECCSSCCTTSTTCC---------STTHHHHHHHHH
T ss_pred hhhhccccchhhhhhhccCCeEEEECCCCCCcCCCCC---------CchHHHHHHHHH
Confidence 111 112457899999999999987532 468889998763
No 4
>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A*
Probab=99.96 E-value=1e-29 Score=259.02 Aligned_cols=208 Identities=19% Similarity=0.222 Sum_probs=152.5
Q ss_pred EEEecChhhHHHHHHHHHHH-HhhCC-CCeEEEEECCCCCHHHHHHHHhc----CCeEEEEeeeCCCchhhhcccCCCch
Q psy7288 10 VTLATNDSYALGALVVANSL-KRVNT-VHDLAILITPGVTLAMKNELLKV----FNFVKEVDVFDSRDETNLRLLSRPDL 83 (518)
Q Consensus 10 VTl~tnd~Yl~ga~VL~~SL-r~~~s-~~~lvvLvt~~vs~~~r~~L~~~----~~~v~~V~~l~~~d~~~l~~~~rp~~ 83 (518)
|++++|++|+.|++|+++|| ++++. ...++|+ +++++++.++.|+.. +..+..+.+ +.....++....+-..
T Consensus 3 I~~~~d~~Y~~~~~vli~Sl~l~~~~~~~~f~il-~~~ls~~~~~~L~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~s 80 (311)
T 1g9r_A 3 IVFAADDNYAAYLCVAAKSVEAAHPDTEIRFHVL-DAGISEANRAAVAANLRGGGGNIRFIDV-NPEDFAGFPLNIRHIS 80 (311)
T ss_dssp EEEEECGGGHHHHHHHHHHHHHTCTTSCCEEEEE-ESSCCHHHHHHHHHHSGGGTTTEEEEEC-CGGGGTTSCCCCTTCC
T ss_pred EEEECCHhHHHHHHHHHHHHHHHcCCCCceEEEE-ECCCCHHHHHHHHHHHHHcCCEEEEEEc-CHHHHhcCccccccCC
Confidence 66889999999999999999 65542 3444444 678999999988876 555554432 2211111111011112
Q ss_pred hhhhHhHhhhhc-cCcCeEEEecCCeEEcCCChhhhCCC----CcccccCCC------------C---CCCCCceEEEEe
Q psy7288 84 GITFTKIHAWRL-TQYSKCVFLDADVLIVQNCDELFDRE----ELSAAPDAG------------W---PDCFNSGVFVFK 143 (518)
Q Consensus 84 ~~tftKL~~w~L-~eydKVVYLDaD~LVl~nIDeLF~~~----elaAapD~g------------w---p~~FNSGVmVi~ 143 (518)
..+|+||+++.+ .+|+||||||+|+||++||++||+++ .++|++|.+ + ..|||||||||+
T Consensus 81 ~~~y~Rl~l~~ll~~~~kvlyLD~D~iv~~di~eL~~~~l~~~~~aav~d~~~~~~~~~~~~~~~~~~~~yfNsGv~lin 160 (311)
T 1g9r_A 81 ITTYARLKLGEYIADCDKVLYLDIDVLVRDSLTPLWDTDLGDNWLGASIDLFVERQEGYKQKIGMADGEYYFNAGVLLIN 160 (311)
T ss_dssp GGGGGGGGHHHHCCSCSCEEEECSSEEECSCCHHHHTCCCTTCSEEEEECHHHHTSTTHHHHTTCCTTSCCEEEEEEEEC
T ss_pred HHHHHHHHHHHHhhhcCEEEEEcCCeEeccCHHHHhccCCCCcEEEEEeccchhhhHHHHHhcCCCCCCceEeeeeeeee
Confidence 579999999995 68999999999999999999999985 477777632 1 259999999999
Q ss_pred CChHH----HHHHHHHHHhc-CCCCcCccccccccccCCCCCcccCCCCCCCCCCCCCccccCCCCCCCCcccccccccc
Q psy7288 144 PSEST----YNALVEFALVN-GSFDDATRQLQKPLNMRNLPKSFFQPPSTGSRSPSVSSISHSRENSADSAFGTSTITST 218 (518)
Q Consensus 144 Ps~~~----~~~Ll~~~~~~-~s~d~~DQdl~~pL~mr~lpN~~F~~~~~~di~p~~~~i~~Lr~~s~p~~YN~~~~~~y 218 (518)
++.++ ++++++.+.+. .++.++|||+ | |.+|.+.. ..| |..||++....+
T Consensus 161 l~~~r~~~~~~~~~~~~~~~~~~~~~~DQd~---l------N~~f~~~~-----------~~L-----p~~wN~~~~~~~ 215 (311)
T 1g9r_A 161 LKKWRRHDIFKMSSEWVEQYKDVMQYQDQDI---L------NGLFKGGV-----------CYA-----NSRFNFMPTNYA 215 (311)
T ss_dssp HHHHTTSCHHHHHHHHHHHHTTTCSSHHHHH---H------HHHHTTSE-----------EEE-----CGGGSBCHHHHH
T ss_pred HHHHHhcchHHHHHHHHHhccCcCccCCcCH---H------HHHHcCCE-----------EEc-----ChhhccCcchhh
Confidence 98754 57777777664 4678999999 9 99998742 678 999999864321
Q ss_pred cc----------------cccCCCceEEcccCCCCCCCcccc
Q psy7288 219 SS----------------SVSGGGLQIAHPRAHSSPASLQQT 244 (518)
Q Consensus 219 ~y----------------~~~~~~~kIiHf~g~~KPW~~~~~ 244 (518)
.+ .....+++||||+|..|||.....
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~iiHy~g~~KPW~~~~~ 257 (311)
T 1g9r_A 216 FMANWFASRHTDPLYRDRTNTVMPVAVSHYCGPAKPWHRDCT 257 (311)
T ss_dssp TCC----CSCCCHHHHHHHSCCSSCSEEECCSSCCTTSSSCC
T ss_pred HHhhhcccccchhhhhHHhhccCCCEEEEeCCcCCCCCCCCC
Confidence 11 123468899999999999987543
No 5
>3kys_B YAP65, 65 kDa YES-associated protein; immunoglobulin-like fold, activator, disease mutation, DNA- binding, nucleus, phosphoprotein, transcription; 2.80A {Homo sapiens} PDB: 3jua_B
Probab=97.26 E-value=0.0002 Score=62.40 Aligned_cols=93 Identities=41% Similarity=0.609 Sum_probs=24.8
Q ss_pred HHHHHHHHHHhcCCCCcCccccccccccCCCCCcccCCCCCCCCCCCCCccccCCCCCCCCcccccccccccccccCCCc
Q psy7288 148 TYNALVEFALVNGSFDDATRQLQKPLNMRNLPKSFFQPPSTGSRSPSVSSISHSRENSADSAFGTSTITSTSSSVSGGGL 227 (518)
Q Consensus 148 ~~~~Ll~~~~~~~s~d~~DQdl~~pL~mr~lpN~~F~~~~~~di~p~~~~i~~Lr~~s~p~~YN~~~~~~y~y~~~~~~~ 227 (518)
..+.|++.+.... ++....++|+|||+||++||+....+ .|-|+++.+-. +....
T Consensus 18 ~LeaLFn~vmnP~---~a~~P~svPmrlRkLP~SFFkpP~p~---------SHSRq~StDsg-------------~~g~l 72 (125)
T 3kys_B 18 DLEALFNAVMNPK---TANVPQTVPMRLRKLPDSFFKPPEPK---------SHSRQASTDAG-------------TAGAL 72 (125)
T ss_dssp HHHHHHHHHHSGG---GCCCCCCCCGGGSSCCGGGTSCCC----------------------------------------
T ss_pred HHHHHHHHhhCCc---ccCCCCccccccccCcHhhcCCCCCC---------CcccccccccC-------------cCCCC
Confidence 3444555443322 33446688999999999999976421 34455544421 22345
Q ss_pred eEEcccCCCCCCCccccchhhh-------------hhhhhHHHhhhhhhhc
Q psy7288 228 QIAHPRAHSSPASLQQTYASAQ-------------QQHQQHLKQRSYDITT 265 (518)
Q Consensus 228 kIiHf~g~~KPW~~~~~~~~~~-------------~~~~~~~~~~WWdi~~ 265 (518)
.+.|.++++.|.+++.++.+.+ ...++|++|.+|||-+
T Consensus 73 ~~~H~RAhSSPASLq~~~~s~g~l~~~g~~~~~~~~~~~~hlrq~s~~i~d 123 (125)
T 3kys_B 73 TPQHVRAHSSPASLQLGAVSPGTLTPTGVVSGPAATPTAQHLRQSSFEIPD 123 (125)
T ss_dssp ---------------------------------------------------
T ss_pred CcccccccCCcccccccccccccccccccccCCCCCccchhhhcccccCCC
Confidence 6899999999999988875431 2458899999999874
No 6
>2kxq_A E3 ubiquitin-protein ligase smurf2; WW, smurf2, TGF-beta, modular binding, protein BIN; NMR {Homo sapiens} PDB: 2lb0_A* 2laz_A*
Probab=95.51 E-value=0.0027 Score=52.93 Aligned_cols=82 Identities=22% Similarity=0.216 Sum_probs=56.7
Q ss_pred CCCCCCCCccccccccceeeecccchhhHHHhhhHhhhhccccCCCCCCCcccccchhhcccccccCCCCCcCchhhHHH
Q psy7288 270 LGPLPPGWEQARTAEGQVYYLKGVLFMYTRLQAGLARALAQVPIGTPISAEQLAYEDHIHRQHWEEGHIDYLGKDSWDNI 349 (518)
Q Consensus 270 ~~~l~~gwe~a~t~~g~~y~~~~~~~~~~~~~~~~a~~~sq~~i~~~~~~~~~~~ee~~rr~~WE~G~iDYmG~dsf~nI 349 (518)
...||+||+...+++|..||.+|.++..+ +...... ..+.. ....+...+..+||+. .|-.|+-.|-|+
T Consensus 7 ~~~LP~gWe~~~~~~Gr~YY~n~~t~~t~-W~~P~~~----~~~~~-----~~~~~~~~LP~gWe~~-~~~~G~~Yy~n~ 75 (90)
T 2kxq_A 7 PPDLPEGYEQRTTQQGQVYFLHTQTGVST-WHDPRVP----RDLSN-----INCEELGPLPPGWEIR-NTATGRVYFVDH 75 (90)
T ss_dssp CCSCCSSCEEEEETTTEEEEEETTTTEEE-SSCSSSC----SSSCS-----CCGGGTCCCCSSCCEE-ECTTSCEEEEET
T ss_pred CCCCCCCcEEEECCCCCEEEEECCCCeEe-eeccccc----ccccc-----cCcccccccCCCceEE-ECCCCCEEEEEC
Confidence 45799999999999999999999988654 2211100 00000 0012223568899997 356788889999
Q ss_pred HHHhhhccCCCCC
Q psy7288 350 WKKISQTIEPSKP 362 (518)
Q Consensus 350 qkKld~~L~~~~~ 362 (518)
..|..+|..++..
T Consensus 76 ~t~~t~w~~Pr~~ 88 (90)
T 2kxq_A 76 NNRTTQFTDPRLS 88 (90)
T ss_dssp TTTEEESSCTTTS
T ss_pred CCCcEecCCCCcC
Confidence 9999999888763
No 7
>1tk7_A CG4244-PB; WW domain, notch, signaling protein; NMR {Drosophila melanogaster} SCOP: b.72.1.1 b.72.1.1
Probab=95.31 E-value=0.0014 Score=54.44 Aligned_cols=80 Identities=19% Similarity=0.312 Sum_probs=55.2
Q ss_pred ccCCCCCCCCccccccccceeeecccchhhHHHhhhHhhhhccccCCCCCCCcccccchhhcccccccCCCCCcCchhhH
Q psy7288 268 DELGPLPPGWEQARTAEGQVYYLKGVLFMYTRLQAGLARALAQVPIGTPISAEQLAYEDHIHRQHWEEGHIDYLGKDSWD 347 (518)
Q Consensus 268 ~e~~~l~~gwe~a~t~~g~~y~~~~~~~~~~~~~~~~a~~~sq~~i~~~~~~~~~~~ee~~rr~~WE~G~iDYmG~dsf~ 347 (518)
+...+||+||+...+++|.+||.+|.++..+ +..... .. .. .....+..+..+||+. .|-.|+-.|-
T Consensus 8 ~~~~~LP~gWe~~~~~~Gr~Yy~n~~t~~t~-W~~P~~---------~~-~~-~~~~~~~~LP~gWe~~-~~~~G~~Yy~ 74 (88)
T 1tk7_A 8 DALGPLPDGWEKKIQSDNRVYFVNHKNRTTQ-WEDPRT---------QG-QE-VSLINEGPLPPGWEIR-YTAAGERFFV 74 (88)
T ss_dssp STTSSSSSSCCEEEETTTEEEEEETTTTEEE-EESCCC---------TT-TC-CHHHHSCSSCSSCEEE-EETTTEEEEE
T ss_pred CccCCCCCCcEEEECCCCCEEEEECCCCCeE-eecccc---------cc-cc-cccccccccCCceEEE-ECCCCCEEEE
Confidence 3467899999999999999999999888654 211100 00 00 0001233458899987 4567888888
Q ss_pred HHHHHhhhccCCC
Q psy7288 348 NIWKKISQTIEPS 360 (518)
Q Consensus 348 nIqkKld~~L~~~ 360 (518)
|+..|..+|.+++
T Consensus 75 nh~t~~ttw~~Pr 87 (88)
T 1tk7_A 75 DHNTRRTTFEDPR 87 (88)
T ss_dssp ETTTTEEESSSSC
T ss_pred ECCCCcEeCCCCC
Confidence 9999988887765
No 8
>2ysg_A Syntaxin-binding protein 4; synip, STXBP4, WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=94.73 E-value=0.0093 Score=42.28 Aligned_cols=30 Identities=37% Similarity=0.615 Sum_probs=25.7
Q ss_pred cCCCCCCCCccccccccceeeecccchhhH
Q psy7288 269 ELGPLPPGWEQARTAEGQVYYLKGVLFMYT 298 (518)
Q Consensus 269 e~~~l~~gwe~a~t~~g~~y~~~~~~~~~~ 298 (518)
...+||+||++..+.+|..||.+|.++..+
T Consensus 4 ~~~~LP~gWe~~~~~~Gr~Yy~nh~t~~tt 33 (40)
T 2ysg_A 4 GSSGLPYGWEEAYTADGIKYFINHVTQTTS 33 (40)
T ss_dssp SSSCCCTTEEEEECSSSCEEEEESSSCCEE
T ss_pred CcCCCCCCcEEEEcCCCCEEEEECCCCcCc
Confidence 346899999999999999999999887543
No 9
>2law_A Yorkie homolog; YAP, SMAD1, CDK, signal transduction, signaling protein-TRAN complex; NMR {Homo sapiens}
Probab=94.69 E-value=0.0089 Score=41.90 Aligned_cols=29 Identities=45% Similarity=0.865 Sum_probs=24.7
Q ss_pred CCCCCCCCccccccccceeeecccchhhH
Q psy7288 270 LGPLPPGWEQARTAEGQVYYLKGVLFMYT 298 (518)
Q Consensus 270 ~~~l~~gwe~a~t~~g~~y~~~~~~~~~~ 298 (518)
..+||+||++..+.+|..||.||.++..+
T Consensus 4 ~~~LP~gWe~~~~~~G~~Yy~nh~t~~tt 32 (38)
T 2law_A 4 EGPLPDGWEQAMTQDGEIYYINHKNKTTS 32 (38)
T ss_dssp -CCCSSSCCEEEETTTEEEEEETTTTEEE
T ss_pred cCCCCCCcEEEECCCCCEEEEECCCCCEe
Confidence 45899999999999999999999877543
No 10
>2djy_A SMAD ubiquitination regulatory factor 2; beta sheet, polyproline type II helix, PPII, ligase/signaling protein complex; NMR {Homo sapiens} PDB: 2lb1_A
Probab=94.53 E-value=0.01 Score=42.57 Aligned_cols=29 Identities=45% Similarity=0.835 Sum_probs=25.4
Q ss_pred CCCCCCCCccccccccceeeecccchhhH
Q psy7288 270 LGPLPPGWEQARTAEGQVYYLKGVLFMYT 298 (518)
Q Consensus 270 ~~~l~~gwe~a~t~~g~~y~~~~~~~~~~ 298 (518)
..+||+||++..+.+|..||.+|.++..+
T Consensus 5 ~~~LP~GWe~~~~~~G~~Yy~nh~t~~tt 33 (42)
T 2djy_A 5 SGPLPPGWEIRNTATGRVYFVDHNNRTTQ 33 (42)
T ss_dssp CSCCCSSEEEEECSSSCEEEEETTTTEEE
T ss_pred cCCCCcCcEEEECCCCCEEEEECCCCCEe
Confidence 46899999999999999999999887544
No 11
>2kyk_A E3 ubiquitin-protein ligase itchy homolog; LMP2A, PY motif, WW domain; NMR {Homo sapiens}
Probab=94.44 E-value=0.014 Score=41.02 Aligned_cols=28 Identities=39% Similarity=0.928 Sum_probs=24.8
Q ss_pred CCCCCCCCccccccccceeeecccchhh
Q psy7288 270 LGPLPPGWEQARTAEGQVYYLKGVLFMY 297 (518)
Q Consensus 270 ~~~l~~gwe~a~t~~g~~y~~~~~~~~~ 297 (518)
..+||+||+...+.+|..||.||.++..
T Consensus 4 ~~~LP~gWe~~~d~~G~~YY~n~~t~~t 31 (39)
T 2kyk_A 4 MGPLPPGWERRVDNMGRIYYVDHFTRTT 31 (39)
T ss_dssp SCCCCSSCEEEECTTSCEEEECSSSCCE
T ss_pred cCCCCCCcEEEEcCCCCEEEEECCCCCE
Confidence 5689999999999999999999987754
No 12
>2zaj_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; BAI1-associated protein 1 (BAP-1); NMR {Homo sapiens}
Probab=94.38 E-value=0.012 Score=43.82 Aligned_cols=32 Identities=28% Similarity=0.472 Sum_probs=27.3
Q ss_pred cccCCCCCCCCccccccccceeeecccchhhH
Q psy7288 267 LDELGPLPPGWEQARTAEGQVYYLKGVLFMYT 298 (518)
Q Consensus 267 l~e~~~l~~gwe~a~t~~g~~y~~~~~~~~~~ 298 (518)
.+...+||+||++..+..|..||+||.++..+
T Consensus 8 ~~~~~~LP~GWe~~~d~~Gr~YYvnh~t~~T~ 39 (49)
T 2zaj_A 8 LDSELELPAGWEKIEDPVYGIYYVDHINRKTQ 39 (49)
T ss_dssp CCCSSCCCTTEEEEEETTTEEEEEETTTTEEE
T ss_pred cCCCCCCCcCceEEEcCCCCEEEEeCCCCCEe
Confidence 44567899999999999999999999887544
No 13
>2l4j_A YES-associated protein 2 (YAP2); WW domain, medaka, transcription; NMR {Oryzias latipes}
Probab=94.29 E-value=0.015 Score=42.63 Aligned_cols=30 Identities=47% Similarity=0.854 Sum_probs=25.9
Q ss_pred cCCCCCCCCccccccccceeeecccchhhH
Q psy7288 269 ELGPLPPGWEQARTAEGQVYYLKGVLFMYT 298 (518)
Q Consensus 269 e~~~l~~gwe~a~t~~g~~y~~~~~~~~~~ 298 (518)
...+||+||++..+.+|..||.+|.++..+
T Consensus 8 ~~~~LP~gWe~~~~~~G~~Yyinh~t~~Tt 37 (46)
T 2l4j_A 8 ASGPLPEGWEQAITPEGEIYYINHKNKTTS 37 (46)
T ss_dssp TTSCCCTTCEEEECTTSCEEEEETTTTEEE
T ss_pred cCCCCCcCceeEECCCCCEEEEECCCCCEe
Confidence 456899999999999999999999877543
No 14
>2yse_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; MAGI-1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.26 E-value=0.016 Score=44.90 Aligned_cols=31 Identities=26% Similarity=0.444 Sum_probs=27.2
Q ss_pred ccCCCCCCCCccccccccceeeecccchhhH
Q psy7288 268 DELGPLPPGWEQARTAEGQVYYLKGVLFMYT 298 (518)
Q Consensus 268 ~e~~~l~~gwe~a~t~~g~~y~~~~~~~~~~ 298 (518)
+....||+|||...+..|..||+||.++..+
T Consensus 9 d~~~~LP~GWE~~~d~~Gr~YYvnh~tk~T~ 39 (60)
T 2yse_A 9 DSELELPAGWEKIEDPVYGIYYVDHINRKTQ 39 (60)
T ss_dssp CCCSSCCSSEEEEECSSSCEEEEETTTTEEE
T ss_pred CCCCCCCCCcEEEECCCCCEEEEeCCCCCee
Confidence 4567899999999999999999999998654
No 15
>2ysf_A E3 ubiquitin-protein ligase itchy homolog; AIP4, NAPP1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=94.23 E-value=0.013 Score=41.59 Aligned_cols=29 Identities=31% Similarity=0.481 Sum_probs=25.2
Q ss_pred CCCCCCCCccccccccceeeecccchhhH
Q psy7288 270 LGPLPPGWEQARTAEGQVYYLKGVLFMYT 298 (518)
Q Consensus 270 ~~~l~~gwe~a~t~~g~~y~~~~~~~~~~ 298 (518)
..+||+||++..+.+|..||.||.++..+
T Consensus 5 ~~~LP~gWe~~~~~~G~~Yy~nh~t~~tt 33 (40)
T 2ysf_A 5 SSGLPEGWEMRFTVDGIPYFVDHNRRTTT 33 (40)
T ss_dssp CCCCCSSEEEEECTTCCEEEEETTTCCEE
T ss_pred cCCCCcCcEEEEcCCCCEEEEECCCCcEe
Confidence 46899999999999999999999877543
No 16
>2jmf_A E3 ubiquitin-protein ligase suppressor of deltex; WW domain, solution, complex, ligase/signaling protein complex; NMR {Drosophila melanogaster} SCOP: b.72.1.1 PDB: 2op7_A
Probab=94.21 E-value=0.014 Score=44.11 Aligned_cols=31 Identities=39% Similarity=0.670 Sum_probs=26.5
Q ss_pred ccCCCCCCCCccccccccceeeecccchhhH
Q psy7288 268 DELGPLPPGWEQARTAEGQVYYLKGVLFMYT 298 (518)
Q Consensus 268 ~e~~~l~~gwe~a~t~~g~~y~~~~~~~~~~ 298 (518)
.+..+||+|||+..+.+|..||++|.++..+
T Consensus 14 ~~~~~LP~GWe~~~~~~Gr~Yyinh~tk~Tt 44 (53)
T 2jmf_A 14 INEGPLPPGWEIRYTAAGERFFVDHNTRRTT 44 (53)
T ss_dssp TSCSCCCTTEEEEECTTSCEEEEETTTCCEE
T ss_pred CcCCCCCcCcEEEEcCCCCEEEEeCCCCcEe
Confidence 3457899999999999999999999887544
No 17
>1i5h_W Rnedd4, ubiquitin ligase NEDD4; NEDD4, WW domains, ENAC, PY motif, liddle syndrome, proline-rich, ligase; NMR {Rattus norvegicus} SCOP: b.72.1.1 PDB: 1yiu_A 2jo9_A 2joc_A*
Probab=93.89 E-value=0.017 Score=43.09 Aligned_cols=30 Identities=37% Similarity=0.958 Sum_probs=26.2
Q ss_pred cCCCCCCCCccccccccceeeecccchhhH
Q psy7288 269 ELGPLPPGWEQARTAEGQVYYLKGVLFMYT 298 (518)
Q Consensus 269 e~~~l~~gwe~a~t~~g~~y~~~~~~~~~~ 298 (518)
+..+||+||++..+.+|..||.||.++..+
T Consensus 8 ~~~~LP~gWe~~~~~~Gr~Yy~nh~t~~T~ 37 (50)
T 1i5h_W 8 DLGPLPPGWEERTHTDGRVFFINHNIKKTQ 37 (50)
T ss_dssp CCSSCSTTEEEEECTTSCEEEEETTTTEEE
T ss_pred cCCCCCcCcEEEEcCCCCEEEEECCCCCEE
Confidence 457899999999999999999999887644
No 18
>2ez5_W Dnedd4, E3 ubiquitin-protein ligase NEDD4; WW domain, PY motif, binding affinity, signalling protein,ligase; NMR {Drosophila melanogaster}
Probab=93.88 E-value=0.017 Score=42.25 Aligned_cols=29 Identities=24% Similarity=0.565 Sum_probs=25.4
Q ss_pred CCCCCCCCccccccccceeeecccchhhH
Q psy7288 270 LGPLPPGWEQARTAEGQVYYLKGVLFMYT 298 (518)
Q Consensus 270 ~~~l~~gwe~a~t~~g~~y~~~~~~~~~~ 298 (518)
..+||+||++..+.+|..||.||.++..+
T Consensus 8 ~~~LP~gWe~~~~~~Gr~Yyinh~t~~Tt 36 (46)
T 2ez5_W 8 EEPLPPRWSMQVAPNGRTFFIDHASRRTT 36 (46)
T ss_dssp SCCCCTTEEEEECTTSSEEEEETTTTEEE
T ss_pred CCCCCcCcEEEEcCCCCEEEEECCCCCEe
Confidence 45799999999999999999999887644
No 19
>1wr4_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus} PDB: 2lb2_A*
Probab=93.77 E-value=0.018 Score=39.41 Aligned_cols=27 Identities=33% Similarity=0.674 Sum_probs=23.9
Q ss_pred CCCCCCCccccccccceeeecccchhh
Q psy7288 271 GPLPPGWEQARTAEGQVYYLKGVLFMY 297 (518)
Q Consensus 271 ~~l~~gwe~a~t~~g~~y~~~~~~~~~ 297 (518)
.+||+||++..+.+|..||.||.++..
T Consensus 3 ~~LP~gWe~~~d~~g~~Yy~n~~t~~t 29 (36)
T 1wr4_A 3 PGLPSGWEERKDAKGRTYYVNHNNRTT 29 (36)
T ss_dssp TTCCTTEEEEECSSSCEEEEETTTTEE
T ss_pred CCCCCCCEEEECCCCCEEEEECCCCCE
Confidence 579999999999999999999987653
No 20
>1jmq_A YAP65, 65 kDa YES-associated protein; polyproline ligand, YAP65 mutant, structural protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1k9q_A* 1k9r_A 1k5r_A* 2lax_A* 2lay_A*
Probab=93.70 E-value=0.036 Score=40.26 Aligned_cols=32 Identities=38% Similarity=0.660 Sum_probs=27.1
Q ss_pred cccCCCCCCCCccccccccceeeecccchhhH
Q psy7288 267 LDELGPLPPGWEQARTAEGQVYYLKGVLFMYT 298 (518)
Q Consensus 267 l~e~~~l~~gwe~a~t~~g~~y~~~~~~~~~~ 298 (518)
+.....||+||+...+++|..||++|+++..+
T Consensus 3 ~P~~~~LP~GWe~~~~~~gr~y~~n~~t~~t~ 34 (46)
T 1jmq_A 3 IPDDVPLPAGWEMAKTSSGQRYFKNHIDQTTT 34 (46)
T ss_dssp CCSSCCCCTTBCCBCCSSCCCBEEETTTTEEE
T ss_pred CCCCCCCCcCcEEEEcCCCceEEEEecCCcee
Confidence 34567899999999999999999999888543
No 21
>1wr3_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus}
Probab=93.69 E-value=0.019 Score=39.54 Aligned_cols=27 Identities=37% Similarity=0.728 Sum_probs=23.9
Q ss_pred CCCCCCCccccccccceeeecccchhh
Q psy7288 271 GPLPPGWEQARTAEGQVYYLKGVLFMY 297 (518)
Q Consensus 271 ~~l~~gwe~a~t~~g~~y~~~~~~~~~ 297 (518)
.+||+||+...+.+|..||.||.++..
T Consensus 3 ~~LP~GWe~~~d~~G~~Yy~n~~t~~t 29 (36)
T 1wr3_A 3 PPLPPGWEEKVDNLGRTYYVNHNNRST 29 (36)
T ss_dssp SCSCTTEEEEECSSSCEEEEETTTCCE
T ss_pred CCCCCCCEEEECCCCCEEEEECCCCCE
Confidence 579999999999999999999987643
No 22
>2ysd_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; MAGI1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=93.62 E-value=0.02 Score=43.85 Aligned_cols=31 Identities=42% Similarity=0.804 Sum_probs=26.9
Q ss_pred ccCCCCCCCCccccccccceeeecccchhhH
Q psy7288 268 DELGPLPPGWEQARTAEGQVYYLKGVLFMYT 298 (518)
Q Consensus 268 ~e~~~l~~gwe~a~t~~g~~y~~~~~~~~~~ 298 (518)
+...+||+||++..+.+|..||++|.++..+
T Consensus 10 ~~~~~LP~GWe~~~~~~Gr~Yyinh~tk~Tt 40 (57)
T 2ysd_A 10 DNLGPLPENWEMAYTENGEVYFIDHNTKTTS 40 (57)
T ss_dssp SCCCSCCSSEEEEECSSCCEEEEETTTTEEE
T ss_pred CCCCCCCcCcEEEECCCCCEEEEECCCCcEe
Confidence 3467899999999999999999999888654
No 23
>2ysb_A Salvador homolog 1 protein; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: k.22.1.1
Probab=93.56 E-value=0.022 Score=42.30 Aligned_cols=29 Identities=34% Similarity=0.606 Sum_probs=25.5
Q ss_pred CCCCCCCCccccccccceeeecccchhhH
Q psy7288 270 LGPLPPGWEQARTAEGQVYYLKGVLFMYT 298 (518)
Q Consensus 270 ~~~l~~gwe~a~t~~g~~y~~~~~~~~~~ 298 (518)
..+||+||++..+.+|..||++|.++..+
T Consensus 9 ~~~LP~gWe~~~~~~Gr~Yy~nh~t~~T~ 37 (49)
T 2ysb_A 9 DLPLPPGWSVDWTMRGRKYYIDHNTNTTH 37 (49)
T ss_dssp CCCCCTTEEEEECSSSCEEEEETTTTEEE
T ss_pred CCCCCCCceEEECCCCCEEEEEcCCCCEE
Confidence 45799999999999999999999887654
No 24
>2kpz_A E3 ubiquitin-protein ligase NEDD4; WW domain, HTLV1, NEDD4, human modular domain, complex, HOST interaction, ligase; NMR {Homo sapiens} PDB: 2kq0_A 2laj_A*
Probab=93.00 E-value=0.026 Score=41.79 Aligned_cols=29 Identities=28% Similarity=0.558 Sum_probs=24.4
Q ss_pred CCCCCCCCccccccccceeeecccchhhH
Q psy7288 270 LGPLPPGWEQARTAEGQVYYLKGVLFMYT 298 (518)
Q Consensus 270 ~~~l~~gwe~a~t~~g~~y~~~~~~~~~~ 298 (518)
..+||+||+...+.+|..||.||.++..+
T Consensus 10 ~~~LP~gWe~~~~~~G~~Yy~nh~T~~tt 38 (49)
T 2kpz_A 10 QGFLPKGWEVRHAPNGRPFFIDHNTKTTT 38 (49)
T ss_dssp --CCCTTEEEEECTTSCEEEEETTTTEEE
T ss_pred CCCCCCCcEEEECCCCCEEEEECCCCCEe
Confidence 46899999999999999999999887644
No 25
>1wr7_A NEDD4-2; all-beta, ligase; NMR {Mus musculus}
Probab=92.97 E-value=0.028 Score=39.93 Aligned_cols=29 Identities=28% Similarity=0.552 Sum_probs=25.0
Q ss_pred CCCCCCCCccccccccceeeecccchhhH
Q psy7288 270 LGPLPPGWEQARTAEGQVYYLKGVLFMYT 298 (518)
Q Consensus 270 ~~~l~~gwe~a~t~~g~~y~~~~~~~~~~ 298 (518)
..+||+||++..+.+|..||.||.++..+
T Consensus 6 ~~~LP~gWe~~~~~~G~~Yy~n~~t~~t~ 34 (41)
T 1wr7_A 6 QSFLPPGWEMRIAPNGRPFFIDHNTKTTT 34 (41)
T ss_dssp CCSSCTTEEEEECTTSCEEEEETTTTEEE
T ss_pred cCCCCCCcEEEEcCCCCEEEEECCCCCee
Confidence 45799999999999999999999877543
No 26
>1wmv_A WWOX, WW domain containing oxidoreductase; all-beta, apoptosis; NMR {Homo sapiens}
Probab=92.95 E-value=0.028 Score=42.56 Aligned_cols=29 Identities=38% Similarity=0.696 Sum_probs=25.7
Q ss_pred CCCCCCCCccccccccceeeecccchhhH
Q psy7288 270 LGPLPPGWEQARTAEGQVYYLKGVLFMYT 298 (518)
Q Consensus 270 ~~~l~~gwe~a~t~~g~~y~~~~~~~~~~ 298 (518)
..+||+|||+..+.+|..||++|.++..+
T Consensus 9 ~~~LP~GWe~~~~~~G~~Yyinh~tk~Tt 37 (54)
T 1wmv_A 9 AGDLPYGWEQETDENGQVFFVDHINKRTT 37 (54)
T ss_dssp SSCSCTTEEEEECTTSCEEEEESSSCCEE
T ss_pred CCCCCcCcEEEECCCCCEEEEeCCCCCEe
Confidence 46899999999999999999999888654
No 27
>2dwv_A Salvador homolog 1 protein; WW domain, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=92.74 E-value=0.027 Score=41.77 Aligned_cols=28 Identities=32% Similarity=0.590 Sum_probs=24.9
Q ss_pred CCCCCCCccccccccceeeecccchhhH
Q psy7288 271 GPLPPGWEQARTAEGQVYYLKGVLFMYT 298 (518)
Q Consensus 271 ~~l~~gwe~a~t~~g~~y~~~~~~~~~~ 298 (518)
..||+|||...+.+|..||+||.++..+
T Consensus 12 ~~LP~GWe~~~d~~g~~YYvnh~t~~T~ 39 (49)
T 2dwv_A 12 EGLPPGWERVESSEFGTYYVDHTNKRAQ 39 (49)
T ss_dssp SCCCTTEEEEEETTTEEEEEETTTTEEE
T ss_pred CCCCcCcEEEECCCCCEEEEECCCCCEe
Confidence 6899999999999999999999887543
No 28
>1e0m_A Wwprototype; SH3 prototype, protein design, de novo protein; NMR {} SCOP: k.22.1.1
Probab=92.37 E-value=0.059 Score=37.09 Aligned_cols=27 Identities=33% Similarity=0.694 Sum_probs=23.5
Q ss_pred CCCCCCCccccccccceeeecccchhh
Q psy7288 271 GPLPPGWEQARTAEGQVYYLKGVLFMY 297 (518)
Q Consensus 271 ~~l~~gwe~a~t~~g~~y~~~~~~~~~ 297 (518)
.+||+||+...+.+|..||.|+.++..
T Consensus 2 ~~LP~gW~~~~~~~G~~Yy~n~~t~~t 28 (37)
T 1e0m_A 2 MGLPPGWDEYKTHNGKTYYYNHNTKTS 28 (37)
T ss_dssp CCSCTTEEEEECSSCCEEEEETTTTEE
T ss_pred CCCCCCcEEEECCCCCEEEEECCCCCe
Confidence 479999999999999999999977643
No 29
>2dmv_A Itchy homolog E3 ubiquitin protein ligase; WW domain, three stranded antiparallel beta sheet, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.05 E-value=0.044 Score=39.33 Aligned_cols=29 Identities=45% Similarity=0.745 Sum_probs=24.9
Q ss_pred CCCCCCCCccccccccceeeecccchhhH
Q psy7288 270 LGPLPPGWEQARTAEGQVYYLKGVLFMYT 298 (518)
Q Consensus 270 ~~~l~~gwe~a~t~~g~~y~~~~~~~~~~ 298 (518)
..+||+||+...+..|..||.||.++..+
T Consensus 5 ~~~LP~GWe~~~d~~Gr~YY~n~~t~~T~ 33 (43)
T 2dmv_A 5 SSGLPPGWEQRVDQHGRVYYVDHVEKRTT 33 (43)
T ss_dssp CCSCCTTEEEEECTTSCEEEEETTTCCEE
T ss_pred CCCCCCCceEEECCCCCEEEEECCCCCEe
Confidence 46899999999999999999999877543
No 30
>2ysh_A GAS-7, growth-arrest-specific protein 7; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=90.21 E-value=0.14 Score=35.83 Aligned_cols=27 Identities=30% Similarity=0.673 Sum_probs=23.8
Q ss_pred CCCCCCCCccccccccceeeecccchh
Q psy7288 270 LGPLPPGWEQARTAEGQVYYLKGVLFM 296 (518)
Q Consensus 270 ~~~l~~gwe~a~t~~g~~y~~~~~~~~ 296 (518)
...||+||+...+.+|..||.|+.++.
T Consensus 5 ~~~LP~gW~~~~d~~Gr~YY~n~~T~~ 31 (40)
T 2ysh_A 5 SSGLPPGWQSYLSPQGRRYYVNTTTNE 31 (40)
T ss_dssp CSSCCTTCEEEECTTSCEEEECSSSCC
T ss_pred CCCCCCCceEEECCCCCEEEEECCCCC
Confidence 457999999999999999999997764
No 31
>3l4h_A E3 ubiquitin-protein ligase HECW1; E3 ligase, WW domain, UBL-conjugation pathway, structural GE structural genomics consortium, SGC, coiled coil; HET: MSE; 1.80A {Homo sapiens}
Probab=90.08 E-value=0.088 Score=45.49 Aligned_cols=31 Identities=26% Similarity=0.455 Sum_probs=27.4
Q ss_pred ccCCCCCCCCccccccccceeeecccchhhH
Q psy7288 268 DELGPLPPGWEQARTAEGQVYYLKGVLFMYT 298 (518)
Q Consensus 268 ~e~~~l~~gwe~a~t~~g~~y~~~~~~~~~~ 298 (518)
+...+||+|||...+.+|..||++|.++.++
T Consensus 68 d~~~pLP~GWE~r~d~~Gr~YfIdH~tktTt 98 (109)
T 3l4h_A 68 DTRLELPRGWEIKTDQQGKSFFVDHNSRATT 98 (109)
T ss_dssp CTTSCCCTTEEEEECTTCCEEEEETTTTEEE
T ss_pred CCCCCCCCCCeEEECCCCCEEEEeCCCCCEe
Confidence 4467899999999999999999999988655
No 32
>2ysc_A Amyloid beta A4 precursor protein-binding family B member 3; Fe65-like protein 2, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.72.1.1
Probab=88.81 E-value=0.11 Score=36.62 Aligned_cols=27 Identities=37% Similarity=0.660 Sum_probs=22.7
Q ss_pred CCCCCCCCccccccccceeeecccchhh
Q psy7288 270 LGPLPPGWEQARTAEGQVYYLKGVLFMY 297 (518)
Q Consensus 270 ~~~l~~gwe~a~t~~g~~y~~~~~~~~~ 297 (518)
..+||+||+...+.+| +||.++.++..
T Consensus 6 ~~~LP~GWe~~~~~~G-~YY~n~~t~~t 32 (39)
T 2ysc_A 6 SGGLPPGWRKIHDAAG-TYYWHVPSGST 32 (39)
T ss_dssp CCCCCTTEEEEEETTE-EEEEESSSCCE
T ss_pred CCCCCCCcEEEEcCCC-CEEEEcCCCCE
Confidence 4689999999999999 69999877643
No 33
>1ymz_A CC45; artificial protein, computational design, unknown function; NMR {Synthetic} SCOP: k.22.1.1
Probab=88.55 E-value=0.19 Score=35.82 Aligned_cols=27 Identities=44% Similarity=0.924 Sum_probs=23.6
Q ss_pred CCCCCCCccccccccceeeecccchhh
Q psy7288 271 GPLPPGWEQARTAEGQVYYLKGVLFMY 297 (518)
Q Consensus 271 ~~l~~gwe~a~t~~g~~y~~~~~~~~~ 297 (518)
.+||+||+...+.+|..||.|+.++..
T Consensus 7 ~~LP~gW~~~~~~~Gr~YY~n~~T~~t 33 (43)
T 1ymz_A 7 MPLPPGWERRTDVEGKVYYFNVRTLTT 33 (43)
T ss_dssp CCCCSSEEEEECTTSCEEEEETTTTEE
T ss_pred CCCCCCCEEEECCCCCEEEEECCCCCC
Confidence 579999999999999999999977643
No 34
>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}
Probab=86.16 E-value=0.84 Score=42.26 Aligned_cols=95 Identities=14% Similarity=0.111 Sum_probs=52.8
Q ss_pred CCCCCCEEEEEEecCh-hhHHHHHHHHHHHHhhC-CCCeEEEEECCCCCHHHHHHHHhc---CCeEEEEeeeCCCchhhh
Q psy7288 1 MFRVTGTAWVTLATND-SYALGALVVANSLKRVN-TVHDLAILITPGVTLAMKNELLKV---FNFVKEVDVFDSRDETNL 75 (518)
Q Consensus 1 ~~~~~~~A~VTl~tnd-~Yl~ga~VL~~SLr~~~-s~~~lvvLvt~~vs~~~r~~L~~~---~~~v~~V~~l~~~d~~~l 75 (518)
|....+...|..+.|. .|+. -++.||.+.. ..+.+ |+++++-++...+.++++ +..++.+. .. +
T Consensus 1 M~~~p~vsViIp~yn~~~~l~---~~l~Sl~~q~~~~~ei-IvvDd~S~d~t~~~~~~~~~~~~~i~~i~---~~---n- 69 (240)
T 3bcv_A 1 MSLIPKVSVIVPIYNVEKYLD---QCVQALLAQTLSDIEI-ILIDDESPDNCPKICDDYAAQYPNIKVIH---KK---N- 69 (240)
T ss_dssp --CCCSEEEEEEESSCTTTHH---HHHHHHHTCSSSSEEE-EEEECCCSSSHHHHHHHHHHHCSSEEEEE---CC---C-
T ss_pred CCCCCcEEEEEecCCCHHHHH---HHHHHHHhCcCCCeEE-EEEECCCCcCHHHHHHHHHhhCCCEEEEE---CC---C-
Confidence 4445567777777774 4554 4556776543 33333 455555555555555543 33443332 11 1
Q ss_pred cccCCCchhhhhHhHhhhhccCcCeEEEecCCeEEcCC
Q psy7288 76 RLLSRPDLGITFTKIHAWRLTQYSKCVFLDADVLIVQN 113 (518)
Q Consensus 76 ~~~~rp~~~~tftKL~~w~L~eydKVVYLDaD~LVl~n 113 (518)
.+....+-...+....+-|+|||+|.++..+
T Consensus 70 -------~G~~~a~N~g~~~a~g~~i~~lD~Dd~~~~~ 100 (240)
T 3bcv_A 70 -------AGLGMACNSGLDVATGEYVAFCDSDDYVDSD 100 (240)
T ss_dssp -------CCHHHHHHHHHHHCCSSEEEECCTTCCCCTT
T ss_pred -------CChHHHHHHHHHHcCCCEEEEECCCCcCCHH
Confidence 1223344455566678999999999987654
No 35
>2kxq_A E3 ubiquitin-protein ligase smurf2; WW, smurf2, TGF-beta, modular binding, protein BIN; NMR {Homo sapiens} PDB: 2lb0_A* 2laz_A*
Probab=85.94 E-value=0.27 Score=40.65 Aligned_cols=30 Identities=50% Similarity=0.915 Sum_probs=25.8
Q ss_pred cCCCCCCCCccccccccceeeecccchhhH
Q psy7288 269 ELGPLPPGWEQARTAEGQVYYLKGVLFMYT 298 (518)
Q Consensus 269 e~~~l~~gwe~a~t~~g~~y~~~~~~~~~~ 298 (518)
+...||.||++..+.+|.+||.+|.++..+
T Consensus 52 ~~~~LP~gWe~~~~~~G~~Yy~n~~t~~t~ 81 (90)
T 2kxq_A 52 ELGPLPPGWEIRNTATGRVYFVDHNNRTTQ 81 (90)
T ss_dssp GTCCCCSSCCEEECTTSCEEEEETTTTEEE
T ss_pred cccccCCCceEEECCCCCEEEEECCCCcEe
Confidence 356899999999999999999999887543
No 36
>2ho2_A Fe65 protein, amyloid beta A4 protein-binding family B member 1; WW domain, beta sheet, Fe65, protein binding; 1.33A {Homo sapiens} SCOP: b.72.1.1 PDB: 2idh_A* 2oei_A
Probab=85.49 E-value=0.24 Score=34.68 Aligned_cols=26 Identities=27% Similarity=0.528 Sum_probs=21.9
Q ss_pred CCCCCCCccccccccceeeecccchhh
Q psy7288 271 GPLPPGWEQARTAEGQVYYLKGVLFMY 297 (518)
Q Consensus 271 ~~l~~gwe~a~t~~g~~y~~~~~~~~~ 297 (518)
..||+||+...+..| .||.++.++..
T Consensus 2 ~~LP~GWe~~~d~~g-~YY~n~~t~~t 27 (38)
T 2ho2_A 2 SDLPAGWMRVQDTSG-TYYWHIPTGTT 27 (38)
T ss_dssp CCSCTTEEEEECSSC-EEEEETTTTEE
T ss_pred CcCCCCceEEEeCCC-CEEEecCCCCE
Confidence 369999999998899 99999877653
No 37
>1tk7_A CG4244-PB; WW domain, notch, signaling protein; NMR {Drosophila melanogaster} SCOP: b.72.1.1 b.72.1.1
Probab=83.36 E-value=0.31 Score=40.12 Aligned_cols=28 Identities=39% Similarity=0.746 Sum_probs=24.7
Q ss_pred CCCCCCCCccccccccceeeecccchhh
Q psy7288 270 LGPLPPGWEQARTAEGQVYYLKGVLFMY 297 (518)
Q Consensus 270 ~~~l~~gwe~a~t~~g~~y~~~~~~~~~ 297 (518)
...||.||++..+.+|.+||.+|.++..
T Consensus 54 ~~~LP~gWe~~~~~~G~~Yy~nh~t~~t 81 (88)
T 1tk7_A 54 EGPLPPGWEIRYTAAGERFFVDHNTRRT 81 (88)
T ss_dssp SCSSCSSCEEEEETTTEEEEEETTTTEE
T ss_pred ccccCCceEEEECCCCCEEEEECCCCcE
Confidence 4689999999999999999999987653
No 38
>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*
Probab=82.70 E-value=9.3 Score=35.42 Aligned_cols=98 Identities=9% Similarity=0.007 Sum_probs=54.0
Q ss_pred EEEEEEecCh-hhHHHHHHHHHHHHhhC-CCCeEEEEECCCCCHHHHHHHHhc--CCeEEEEeeeCCCchhhhcccCCCc
Q psy7288 7 TAWVTLATND-SYALGALVVANSLKRVN-TVHDLAILITPGVTLAMKNELLKV--FNFVKEVDVFDSRDETNLRLLSRPD 82 (518)
Q Consensus 7 ~A~VTl~tnd-~Yl~ga~VL~~SLr~~~-s~~~lvvLvt~~vs~~~r~~L~~~--~~~v~~V~~l~~~d~~~l~~~~rp~ 82 (518)
...|..+.|. .|+.. ++.||.+.. +.+. +|+++++-++...+.++++ ...++.+. .......... ..
T Consensus 3 vSViIp~yn~~~~l~~---~l~Sl~~q~~~~~e-iivvDd~S~d~t~~~~~~~~~~~~i~~i~---~~~~~~~~~~--~n 73 (255)
T 1qg8_A 3 VSVIMTSYNKSDYVAK---SISSILSQTFSDFE-LFIMDDNSNEETLNVIRPFLNDNRVRFYQ---SDISGVKERT--EK 73 (255)
T ss_dssp EEEEEEESSCTTTHHH---HHHHHHTCSCCCEE-EEEEECSCCHHHHHHHGGGGGSTTEEEEE---CCCCSHHHHH--SS
T ss_pred EEEEEEcCCCHHHHHH---HHHHHHhccCCceE-EEEEECCCCchHHHHHHHHhhcCCEEEEe---cccccccccc--cc
Confidence 4556666674 45544 566776543 3333 4456667778888888776 33333222 2100000000 01
Q ss_pred hhhhhHhHhhhhccCcCeEEEecCCeEEcCC
Q psy7288 83 LGITFTKIHAWRLTQYSKCVFLDADVLIVQN 113 (518)
Q Consensus 83 ~~~tftKL~~w~L~eydKVVYLDaD~LVl~n 113 (518)
.+....+-........+-|+|||+|.++..+
T Consensus 74 ~G~~~a~N~gi~~a~g~~i~~lD~Dd~~~~~ 104 (255)
T 1qg8_A 74 TRYAALINQAIEMAEGEYITYATDDNIYMPD 104 (255)
T ss_dssp CHHHHHHHHHHHHCCCSEEEEEETTEEECTT
T ss_pred cCHHHHHHHHHHHcCCCEEEEeCCCCccChH
Confidence 2333445555666788999999999998654
No 39
>3olm_A E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {Saccharomyces cerevisiae}
Probab=80.98 E-value=0.48 Score=50.06 Aligned_cols=32 Identities=38% Similarity=0.691 Sum_probs=27.3
Q ss_pred cccCCCCCCCCccccccccceeeecccchhhH
Q psy7288 267 LDELGPLPPGWEQARTAEGQVYYLKGVLFMYT 298 (518)
Q Consensus 267 l~e~~~l~~gwe~a~t~~g~~y~~~~~~~~~~ 298 (518)
.+..++||+|||++.+++|.+||.+|.+++++
T Consensus 3 ~~~~~~lP~gWe~~~~~~g~~y~i~h~~~~t~ 34 (429)
T 3olm_A 3 ASQLGPLPSGWEMRLTNTARVYFVDHNTKTTT 34 (429)
T ss_dssp --CCCCCCTTCCCCCSSCCCCCEEETTTTEEE
T ss_pred CccCCCCCCCceeEECCCCCeEEEeCCCccee
Confidence 34578999999999999999999999988654
No 40
>1eg3_A Dystrophin; EF-hand like domain, WW domain, structural protein; 2.00A {Homo sapiens} SCOP: a.39.1.7 a.39.1.7 b.72.1.1 PDB: 1eg4_A
Probab=80.67 E-value=0.44 Score=47.12 Aligned_cols=28 Identities=18% Similarity=0.291 Sum_probs=25.3
Q ss_pred CCCCCCCccccccccceeeecccchhhH
Q psy7288 271 GPLPPGWEQARTAEGQVYYLKGVLFMYT 298 (518)
Q Consensus 271 ~~l~~gwe~a~t~~g~~y~~~~~~~~~~ 298 (518)
+++|+|||++.|.+|..||.+|.+++++
T Consensus 10 ~~l~~~we~~~~~~~~~y~~~h~~~tt~ 37 (261)
T 1eg3_A 10 TSVQGPWERAISPNKVPYYINHETQTTC 37 (261)
T ss_dssp TTCCTTEEEEECTTSCEEEEETTTTEEE
T ss_pred CCCCCCcceeECCCCCeEeecCCccccc
Confidence 6899999999999999999999988643
No 41
>2e45_A Fe65 protein, amyloid beta A4 precursor protein-binding family B member 1; triple-stranded beta-sheet; NMR {Homo sapiens} SCOP: b.72.1.1
Probab=79.82 E-value=0.49 Score=35.82 Aligned_cols=31 Identities=23% Similarity=0.449 Sum_probs=26.1
Q ss_pred cccCCCCCCCCccccccccceeeecccchhhH
Q psy7288 267 LDELGPLPPGWEQARTAEGQVYYLKGVLFMYT 298 (518)
Q Consensus 267 l~e~~~l~~gwe~a~t~~g~~y~~~~~~~~~~ 298 (518)
++....||+||+...+..| .||.++.+..++
T Consensus 14 ~~~~~~LPpGW~~~~D~sG-tYY~h~~T~tTQ 44 (55)
T 2e45_A 14 FETDSDLPAGWMRVQDTSG-TYYWHIPTGTTQ 44 (55)
T ss_dssp TCSCSCCCTTEEEEEETTE-EEEEETTTCCEE
T ss_pred ccCCCCCCCCCeEeecCCC-CEEEEcCCCCCc
Confidence 5667889999999999999 999998776543
No 42
>3tc5_A Peptidyl-prolyl CIS-trans isomerase NIMA-interact; PIN1 mutant (R14A), oncogenic transformation, small molecule cycle, rotamase, phosphoprotein; HET: 3T5 P6G; 1.40A {Homo sapiens} PDB: 2itk_A* 2q5a_A* 2xp3_A* 2xp4_A* 2xp5_A* 2xp7_A* 2xp8_A* 2xp9_A* 2xpa_A* 2xpb_A* 3kab_A* 3kag_A* 3kah_A* 3kai_A* 3kce_A* 3ntp_A* 3odk_A* 3oob_A* 2zr6_A* 1f8a_B* ...
Probab=75.62 E-value=0.71 Score=42.46 Aligned_cols=32 Identities=34% Similarity=0.773 Sum_probs=23.2
Q ss_pred cccCCCCCCCCccccc-cccceeeecccchhhH
Q psy7288 267 LDELGPLPPGWEQART-AEGQVYYLKGVLFMYT 298 (518)
Q Consensus 267 l~e~~~l~~gwe~a~t-~~g~~y~~~~~~~~~~ 298 (518)
|.+..+||+||+...+ ..|..||+||.++..+
T Consensus 4 m~~~~~LP~gWe~~~~~~~g~~yy~n~~t~~t~ 36 (166)
T 3tc5_A 4 MADEEKLPPGWEKAMSRSSGRVYYFNHITNASQ 36 (166)
T ss_dssp ------CCTTEEEEECTTTCCEEEEETTTCCEE
T ss_pred CCCCCCCCCCceEEEcCCCCCEEEEECCCCCEE
Confidence 3345689999999998 6999999999988644
No 43
>2jv4_A Peptidyl-prolyl CIS/trans isomerase; ppiase domain, WW domain group IV, rotamase; NMR {Emericella nidulans}
Probab=74.07 E-value=1.7 Score=32.65 Aligned_cols=26 Identities=27% Similarity=0.538 Sum_probs=22.0
Q ss_pred CCCCCCCcccccc-ccceeeecccchh
Q psy7288 271 GPLPPGWEQARTA-EGQVYYLKGVLFM 296 (518)
Q Consensus 271 ~~l~~gwe~a~t~-~g~~y~~~~~~~~ 296 (518)
..||+||+...+. .|..||.|+.++.
T Consensus 6 ~~LP~GW~~~~~~~~Gr~YY~N~~T~~ 32 (54)
T 2jv4_A 6 TGLPAGWEVRHSNSKNLPYYFNPATRE 32 (54)
T ss_dssp CCCCSSCCEEECSSSSCEEEEETTTTE
T ss_pred CCCCCCcEEEEECCCCCEEEEECCCCc
Confidence 5799999987765 8999999987764
No 44
>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A*
Probab=71.41 E-value=6 Score=42.67 Aligned_cols=100 Identities=16% Similarity=0.103 Sum_probs=55.2
Q ss_pred CCEEEEEEecChhhHHHHHHHHHHHHhhCCC-Ce-EEEEECCCCCHHH-HHHHHhc---CCeEEEEeeeCCCchhhhccc
Q psy7288 5 TGTAWVTLATNDSYALGALVVANSLKRVNTV-HD-LAILITPGVTLAM-KNELLKV---FNFVKEVDVFDSRDETNLRLL 78 (518)
Q Consensus 5 ~~~A~VTl~tnd~Yl~ga~VL~~SLr~~~s~-~~-lvvLvt~~vs~~~-r~~L~~~---~~~v~~V~~l~~~d~~~l~~~ 78 (518)
.+...|..+.|.. +..+.-++.||.+.... .. -+|+|+++-++.. .+.|+++ +..|+. +.... +
T Consensus 112 P~vSVIIp~yNe~-~~~L~~~L~Sll~qt~~~~~~EIIVVDDgS~D~tl~~~l~~~~~~~~~v~v---i~~~~--n---- 181 (570)
T 2d7i_A 112 PNTSIIIPFHNEG-WSSLLRTVHSVLNRSPPELVAEIVLVDDFSDREHLKKPLEDYMALFPSVRI---LRTKK--R---- 181 (570)
T ss_dssp CCEEEEEEESSCC-HHHHHHHHHHHHHHSCGGGEEEEEEEECSCCCGGGTHHHHHHHTTSTTEEE---EECSS--C----
T ss_pred CCeEEEEEECCCC-HHHHHHHHHHHHhcCCccCcEEEEEEECCCCcHHHHHHHHHHHHhCCeEEE---EECCC--C----
Confidence 3566676677865 34445567788776443 22 2455665544444 4555443 233332 22211 1
Q ss_pred CCCchhhhhHhHhhhhccCcCeEEEecCCeEEcCC-Chhhh
Q psy7288 79 SRPDLGITFTKIHAWRLTQYSKCVFLDADVLIVQN-CDELF 118 (518)
Q Consensus 79 ~rp~~~~tftKL~~w~L~eydKVVYLDaD~LVl~n-IDeLF 118 (518)
.+..-.+.........+-|+|||+|+++..+ |..|.
T Consensus 182 ----~G~~~A~N~G~~~A~gd~i~fLD~D~~~~p~~L~~ll 218 (570)
T 2d7i_A 182 ----EGLIRTRMLGASVATGDVITFLDSHCEANVNWLPPLL 218 (570)
T ss_dssp ----CCHHHHHHHHHHHCCSSEEEECCSSEEECTTCSHHHH
T ss_pred ----CCHHHHHHHHHHhcCCCEEEEEcCCccccccHHHHHH
Confidence 1233344555556678999999999999654 34443
No 45
>3ckj_A Putative uncharacterized protein; mycobacteria, unknown function; HET: CIT; 1.80A {Mycobacterium paratuberculosis} PDB: 3ckn_A* 3cko_A* 3ckq_A* 3ckv_A* 3e26_A 3e25_A
Probab=69.54 E-value=19 Score=35.53 Aligned_cols=101 Identities=14% Similarity=0.051 Sum_probs=58.2
Q ss_pred CCEEEEEEecCh-hhHHHHHHHHHHHHhhC-CC-CeEEEEECCCCCHHHHHHHHhcCCeEEE-EeeeCCCchhhhcccCC
Q psy7288 5 TGTAWVTLATND-SYALGALVVANSLKRVN-TV-HDLAILITPGVTLAMKNELLKVFNFVKE-VDVFDSRDETNLRLLSR 80 (518)
Q Consensus 5 ~~~A~VTl~tnd-~Yl~ga~VL~~SLr~~~-s~-~~lvvLvt~~vs~~~r~~L~~~~~~v~~-V~~l~~~d~~~l~~~~r 80 (518)
.+...|..++|. .|+ .-++.||.... +. .. +|+++++-++...+.+++++..+.. +.++.. ..
T Consensus 48 ~~vSViIp~yN~~~~l---~~~l~sl~~q~~~~~~e-iivVDdgS~D~t~~~~~~~~~~~~~~~~~~~~-~~-------- 114 (329)
T 3ckj_A 48 RTISVVLPALDEEDTI---GSVIDSISPLVDGLVDE-LIVLDSGSTDDTEIRAVAAGARVVSREQALPE-VP-------- 114 (329)
T ss_dssp CCEEEEEEESSCTTTH---HHHHHHHGGGBTTTBSE-EEEEECSCCSSHHHHHHHTTCEEEEHHHHCTT-SC--------
T ss_pred CcEEEEEeeCCCHHHH---HHHHHHHHHhhCCCCcE-EEEEeCCCCchHHHHHHHhhhhhccceeeecc-CC--------
Confidence 456666667785 344 44567777654 32 34 4456666667788888887665432 222210 00
Q ss_pred CchhhhhHhHhhhhccCcCeEEEecCCeE-EcCC-Chhhh
Q psy7288 81 PDLGITFTKIHAWRLTQYSKCVFLDADVL-IVQN-CDELF 118 (518)
Q Consensus 81 p~~~~tftKL~~w~L~eydKVVYLDaD~L-Vl~n-IDeLF 118 (518)
...+........+.....+-|+|||+|.+ +..+ |..|.
T Consensus 115 ~n~G~~~a~n~g~~~a~gd~i~~lD~D~~~~~p~~l~~l~ 154 (329)
T 3ckj_A 115 IRPGKGEALWRSLAASRGDIVVFVDSDLINPHPMFVPWLV 154 (329)
T ss_dssp CCCSHHHHHHHHHHHCCCSEEEECCTTEESCCTTHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCCEEEEECCCCCCcChHHHHHHH
Confidence 11233334444556667899999999999 6543 45543
No 46
>3l4h_A E3 ubiquitin-protein ligase HECW1; E3 ligase, WW domain, UBL-conjugation pathway, structural GE structural genomics consortium, SGC, coiled coil; HET: MSE; 1.80A {Homo sapiens}
Probab=68.95 E-value=0.16 Score=43.81 Aligned_cols=62 Identities=16% Similarity=0.180 Sum_probs=49.1
Q ss_pred CCCCCCccccccccceeeecccchhhHHHhhhHhhhhccccCCCCCCCcccccchhhcccccccCCCCCcCchhhHHHHH
Q psy7288 272 PLPPGWEQARTAEGQVYYLKGVLFMYTRLQAGLARALAQVPIGTPISAEQLAYEDHIHRQHWEEGHIDYLGKDSWDNIWK 351 (518)
Q Consensus 272 ~l~~gwe~a~t~~g~~y~~~~~~~~~~~~~~~~a~~~sq~~i~~~~~~~~~~~ee~~rr~~WE~G~iDYmG~dsf~nIqk 351 (518)
..|.|||...++.|.+||+++... .+...+.+||.. +|-.|+-.|-|+..
T Consensus 45 r~p~~we~~~~~~~lV~~vn~~~d-----------------------------~~~pLP~GWE~r-~d~~Gr~YfIdH~t 94 (109)
T 3l4h_A 45 RDARNFERYQHNRDLVNFINMFAD-----------------------------TRLELPRGWEIK-TDQQGKSFFVDHNS 94 (109)
T ss_dssp HCTHHHHHHTTCHHHHHHHHTTCC-----------------------------TTSCCCTTEEEE-ECTTCCEEEEETTT
T ss_pred cCCcChhhhcCcCCceEEeccCCC-----------------------------CCCCCCCCCeEE-ECCCCCEEEEeCCC
Confidence 468899999999999999997531 122357889987 45688889999999
Q ss_pred HhhhccCCCCCC
Q psy7288 352 KISQTIEPSKPP 363 (518)
Q Consensus 352 Kld~~L~~~~~~ 363 (518)
|..+|.+++...
T Consensus 95 ktTtW~dPRl~~ 106 (109)
T 3l4h_A 95 RATTFIDPRIPL 106 (109)
T ss_dssp TEEESSCSCCSC
T ss_pred CCEeeCCCCccc
Confidence 999999987754
No 47
>1o6w_A PRP40, PRE-mRNA processing protein PRP40; WW domain PAIR, nuclear protein, mRNA splicing, ribonucleoprotein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1 b.72.1.1
Probab=68.60 E-value=0.29 Score=38.83 Aligned_cols=72 Identities=18% Similarity=0.209 Sum_probs=48.1
Q ss_pred CCCccccccccceeeecccchhhHHHhhhHhhhhccccCCCCCCCcccccchhhcccccccCCCCCcCchhhHHHHHHhh
Q psy7288 275 PGWEQARTAEGQVYYLKGVLFMYTRLQAGLARALAQVPIGTPISAEQLAYEDHIHRQHWEEGHIDYLGKDSWDNIWKKIS 354 (518)
Q Consensus 275 ~gwe~a~t~~g~~y~~~~~~~~~~~~~~~~a~~~sq~~i~~~~~~~~~~~ee~~rr~~WE~G~iDYmG~dsf~nIqkKld 354 (518)
++|+...+++|+.||.|+.+...+ +....... ...+...+...||+. .|-.|+-.|-|...+..
T Consensus 2 ~~W~~~~~~~Gr~YY~n~~T~~s~-W~~P~~~~--------------~~~~~~~lp~gW~~~-~~~~Gr~Yy~n~~t~~t 65 (75)
T 1o6w_A 2 SIWKEAKDASGRIYYYNTLTKKST-WEKPKELI--------------SQEELLLRENGWKAA-KTADGKVYYYNPTTRET 65 (75)
T ss_dssp CCEEEEECTTCCEEEEETTTTEEE-SSCCHHHH--------------HHHHHHHHHHTCEEE-ECTTCCEEEEETTTTEE
T ss_pred CCCeEEECCCCCeEEEECCCCCEE-eecchhhc--------------ccccccCCCCeEEEE-ECCCCCEEEEECCCCCE
Confidence 589999999999999999887543 11110000 001122357889886 34568888889999998
Q ss_pred hccCCCCC
Q psy7288 355 QTIEPSKP 362 (518)
Q Consensus 355 ~~L~~~~~ 362 (518)
++-.++.+
T Consensus 66 ~W~~P~~~ 73 (75)
T 1o6w_A 66 SWTIPAFE 73 (75)
T ss_dssp ESSCCCCC
T ss_pred ECCCCCCC
Confidence 88877653
No 48
>1fo8_A Alpha-1,3-mannosyl-glycoprotein beta-1,2-N- acetylglucosaminyltransferase; methylmercury derivative, N- acetylglucosaminyltransferase I; 1.40A {Oryctolagus cuniculus} SCOP: c.68.1.10 PDB: 1fo9_A 1foa_A* 2apc_A* 2am3_A* 2am4_A* 2am5_A*
Probab=68.23 E-value=11 Score=38.46 Aligned_cols=105 Identities=9% Similarity=0.018 Sum_probs=56.7
Q ss_pred EEEEEecChhhHHHHHHHHHHHHhhCCCC--eEEEEECCCCCHHHHHHHHhcCCeEEEEeeeCCCc----hhhhcccCCC
Q psy7288 8 AWVTLATNDSYALGALVVANSLKRVNTVH--DLAILITPGVTLAMKNELLKVFNFVKEVDVFDSRD----ETNLRLLSRP 81 (518)
Q Consensus 8 A~VTl~tnd~Yl~ga~VL~~SLr~~~s~~--~lvvLvt~~vs~~~r~~L~~~~~~v~~V~~l~~~d----~~~l~~~~rp 81 (518)
+.|.+++|.-- +.-++.||++..+.. ..+|+..++-.++.++.++.++..+.-+..-+... ..|+..-...
T Consensus 5 pViI~~yNRp~---l~~~L~sL~~~~p~~~~~~iivsdDgs~~~~~~vi~~~~~~I~~~~~~d~~~~~~~~~N~g~~~y~ 81 (343)
T 1fo8_A 5 PILVIACDRST---VRRCLDKLLHYRPSAELFPIIVSQDCGHEETAQVIASYGSAVTHIRQPDLSNIAVQPDHRKFQGYY 81 (343)
T ss_dssp CEEEEESSCTT---HHHHHHHHHHHCSCTTTSCEEEEECTTCHHHHHHHHTTGGGSEEEECSCCCCCCCCTTCGGGHHHH
T ss_pred cEEEEECCcHH---HHHHHHHHHhcCCCcCCcEEEEEECCCCHHHHHHHHHcCCceEEEEcCCccccccchhhcCcccch
Confidence 45666778663 566778888876432 34555566777889998888654433221111110 0111100000
Q ss_pred chhhh--hHhHhhhhccCcCeEEEecCCeEEcCCCh
Q psy7288 82 DLGIT--FTKIHAWRLTQYSKCVFLDADVLIVQNCD 115 (518)
Q Consensus 82 ~~~~t--ftKL~~w~L~eydKVVYLDaD~LVl~nID 115 (518)
++... +..-+++....++.||+||-|+++-.+.=
T Consensus 82 ~ia~h~~~al~~vf~~~~~~~vIiLEDDl~~spdF~ 117 (343)
T 1fo8_A 82 KIARHYRWALGQIFHNFNYPAAVVVEDDLEVAPDFF 117 (343)
T ss_dssp HHHHHHHHHHHHHHTTSCCSEEEEEETTEEECTTHH
T ss_pred hHhHHHHHHHHHHHHhccCCEEEEEcCCCeECHHHH
Confidence 00000 11122333447999999999999987653
No 49
>3f1y_A Mannosyl-3-phosphoglycerate synthase; GT-A type glycosyltransferase, GT-81, mannosyl-3-phosphoglyc synthase, GDP-mannose, transferas; 2.20A {Rubrobacter xylanophilus} PDB: 3kia_A* 3o3p_A*
Probab=66.32 E-value=15 Score=37.83 Aligned_cols=95 Identities=13% Similarity=0.025 Sum_probs=53.3
Q ss_pred CEEEEEEecCh-hhHHHHHHHHHHHHh-hCCCCeEEEEECCCCCHHHHHHHHhcCCeEEEEeeeCCCchhhhcccCCCch
Q psy7288 6 GTAWVTLATND-SYALGALVVANSLKR-VNTVHDLAILITPGVTLAMKNELLKVFNFVKEVDVFDSRDETNLRLLSRPDL 83 (518)
Q Consensus 6 ~~A~VTl~tnd-~Yl~ga~VL~~SLr~-~~s~~~lvvLvt~~vs~~~r~~L~~~~~~v~~V~~l~~~d~~~l~~~~rp~~ 83 (518)
+...|.-++|. .++..++-.+..+.+ ....+.+ |+|+++-++.+.+.+++++..++.....-... ....
T Consensus 95 ~vSVVIP~yNe~~~l~~~l~sl~~~l~~~~~~~EI-IVVDDgStD~T~~i~~~~~~~v~~~~~~~i~~--------~~n~ 165 (387)
T 3f1y_A 95 TVSAVLPSRNVADTVGGIIDEIHALNERAPLIDQI-LVVDADSEDGTAGVAASHGAEVYSENELMSGY--------GDAH 165 (387)
T ss_dssp CEEEEEEESSCTTTHHHHHHHHHHHHHHSCCCSEE-EEEECSCSSSHHHHHHHTTCEEEEGGGTTGGG--------CSCC
T ss_pred eEEEEEEcCCCHHHHHHHHHHHHHHHhcCCCCeEE-EEEcCcCCccHHHHHHHhCchhcccceeEecC--------CccC
Confidence 45556666785 566655554444332 3334444 45666767778888888776543211100000 0112
Q ss_pred hhhhHhHhhhhccCcCeEEEecCCeE
Q psy7288 84 GITFTKIHAWRLTQYSKCVFLDADVL 109 (518)
Q Consensus 84 ~~tftKL~~w~L~eydKVVYLDaD~L 109 (518)
+........+....++-|+|||+|..
T Consensus 166 G~g~A~n~G~~~A~gd~i~~lDaD~~ 191 (387)
T 3f1y_A 166 GKGDAMWRALSVTRGDLVLYIDADTR 191 (387)
T ss_dssp SHHHHHHHHTTTCCSSEEEECCTTCS
T ss_pred CHHHHHHHHHHhcCCCEEEEEcCCCC
Confidence 33334444555667899999999998
No 50
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=60.64 E-value=43 Score=35.84 Aligned_cols=94 Identities=17% Similarity=0.144 Sum_probs=54.3
Q ss_pred CEEEEEEecChhhHHHHHHHHHHHHhhCCCCeE-EEEECCCCCHHHHHHHHhcCC--eEEEEeeeCCCchhhhcccCCCc
Q psy7288 6 GTAWVTLATNDSYALGALVVANSLKRVNTVHDL-AILITPGVTLAMKNELLKVFN--FVKEVDVFDSRDETNLRLLSRPD 82 (518)
Q Consensus 6 ~~A~VTl~tnd~Yl~ga~VL~~SLr~~~s~~~l-vvLvt~~vs~~~r~~L~~~~~--~v~~V~~l~~~d~~~l~~~~rp~ 82 (518)
+...|..+.|.. ..+.-++.||.......++ +|+++++-++...+.++.+.. .++.+.. ... .
T Consensus 94 ~vsviIp~~n~~--~~l~~~l~sl~~q~~~~~~eiivvDd~s~d~t~~~~~~~~~~~~i~~i~~---~~~---------~ 159 (625)
T 2z86_A 94 GLSIVIPTYNRA--KILAITLACLCNQKTIYDYEVIVADDGSKENIEEIVREFESLLNIKYVRQ---KDY---------G 159 (625)
T ss_dssp CEEEEEEESSCH--HHHHHHHHHHHTCCCSSCEEEEEEEESCSSCHHHHHHTTTTTSCEEEEEE---CCC---------S
T ss_pred cEEEEEecCCcH--HHHHHHHHHHHhhccCCCeEEEEEeCCCchhHHHHHHHhhhcCCeEEEEe---CCC---------C
Confidence 456666667763 4455567888776432233 345555656667777776532 2322221 100 1
Q ss_pred hhhhhHhHhhhhccCcCeEEEecCCeEEcCC
Q psy7288 83 LGITFTKIHAWRLTQYSKCVFLDADVLIVQN 113 (518)
Q Consensus 83 ~~~tftKL~~w~L~eydKVVYLDaD~LVl~n 113 (518)
++....+-..+.....+-|++||+|.++..+
T Consensus 160 ~g~~~a~N~g~~~a~g~~v~~lD~D~~~~~~ 190 (625)
T 2z86_A 160 YQLCAVRNLGLRAAKYNYVAILDCDMAPNPL 190 (625)
T ss_dssp CCHHHHHHHHHHHCCSSEEEEECTTEEECTT
T ss_pred cchhHHHHHHHHhCCcCEEEEECCCCCCCHH
Confidence 1223344455566788999999999999654
No 51
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=58.60 E-value=11 Score=40.70 Aligned_cols=92 Identities=21% Similarity=0.083 Sum_probs=51.1
Q ss_pred CCCEEEEEEecCh-hhHHHHHHHHHHHHhh-CCCCeEEEEECCCCCHHHHHHHHhc---CCeEEEEeeeCCCchhhhccc
Q psy7288 4 VTGTAWVTLATND-SYALGALVVANSLKRV-NTVHDLAILITPGVTLAMKNELLKV---FNFVKEVDVFDSRDETNLRLL 78 (518)
Q Consensus 4 ~~~~A~VTl~tnd-~Yl~ga~VL~~SLr~~-~s~~~lvvLvt~~vs~~~r~~L~~~---~~~v~~V~~l~~~d~~~l~~~ 78 (518)
....+.|+.+.|. .|+.. ++.||... ..++.+ |+++++-++...+.++++ +..++.+. .. +
T Consensus 374 ~~~vsiii~~yn~~~~l~~---~l~s~~~q~~~~~ei-ivvdd~S~d~t~~~~~~~~~~~~~i~~~~---~~---n---- 439 (625)
T 2z86_A 374 VPLVSIYIPAYNCSKYIVR---CVESALNQTITDLEV-CICDDGSTDDTLRILQEHYANHPRVRFIS---QK---N---- 439 (625)
T ss_dssp SCSEEEEEEESSCTTTHHH---HHHHHHSSSCCSEEE-EEEEESCSSSHHHHHHHHHTTCTTEEEEE---EC---C----
T ss_pred CCeEEEEEeCCCCHHHHHH---HHHHHHhCcCCCeEE-EEEECcCChhHHHHHHHHHhhCCcEEEEe---CC---C----
Confidence 4467777777884 45543 45677653 333344 445555555555666553 23333222 11 1
Q ss_pred CCCchhhhhHhHhhhhccCcCeEEEecCCeEEcCC
Q psy7288 79 SRPDLGITFTKIHAWRLTQYSKCVFLDADVLIVQN 113 (518)
Q Consensus 79 ~rp~~~~tftKL~~w~L~eydKVVYLDaD~LVl~n 113 (518)
.+.....-........+=|+|||+|.++..+
T Consensus 440 ----~G~~~a~n~g~~~a~g~~i~~ld~D~~~~~~ 470 (625)
T 2z86_A 440 ----KGIGSASNTAVRLCRGFYIGQLDSDDFLEPD 470 (625)
T ss_dssp ----CCHHHHHHHHHHHCCSSEEEECCTTCEECTT
T ss_pred ----CCHHHHHHHHHHhcCCCEEEEECCCcccChh
Confidence 1222333445555677889999999998654
No 52
>1o6w_A PRP40, PRE-mRNA processing protein PRP40; WW domain PAIR, nuclear protein, mRNA splicing, ribonucleoprotein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1 b.72.1.1
Probab=53.34 E-value=2.5 Score=33.27 Aligned_cols=25 Identities=36% Similarity=0.651 Sum_probs=21.6
Q ss_pred CCCCCccccccccceeeecccchhh
Q psy7288 273 LPPGWEQARTAEGQVYYLKGVLFMY 297 (518)
Q Consensus 273 l~~gwe~a~t~~g~~y~~~~~~~~~ 297 (518)
|+.||+...+.+|.+||.|+.+...
T Consensus 41 lp~gW~~~~~~~Gr~Yy~n~~t~~t 65 (75)
T 1o6w_A 41 RENGWKAAKTADGKVYYYNPTTRET 65 (75)
T ss_dssp HHHTCEEEECTTCCEEEEETTTTEE
T ss_pred CCCeEEEEECCCCCEEEEECCCCCE
Confidence 6789999999999999999977643
No 53
>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*
Probab=52.01 E-value=61 Score=33.76 Aligned_cols=92 Identities=16% Similarity=0.097 Sum_probs=49.2
Q ss_pred CEEEEEEecChh--hHHHHHHHHHHHHhhCCC-Ce-EEEEECCCCCHHHHHHHHhcCCeEEEEeeeCCCchhhhcccCCC
Q psy7288 6 GTAWVTLATNDS--YALGALVVANSLKRVNTV-HD-LAILITPGVTLAMKNELLKVFNFVKEVDVFDSRDETNLRLLSRP 81 (518)
Q Consensus 6 ~~A~VTl~tnd~--Yl~ga~VL~~SLr~~~s~-~~-lvvLvt~~vs~~~r~~L~~~~~~v~~V~~l~~~d~~~l~~~~rp 81 (518)
+...|..+.|.. ++ .-++.||.+.... .. =+|+|+++-++.....+...+..++. +....
T Consensus 67 ~vSVIIp~yN~~~~~L---~~~l~Sl~~q~~~~~~~EIIvVDDgS~D~t~~~~~~~~~~v~v---i~~~~---------- 130 (501)
T 2ffu_A 67 ATSVVITFHNEARSAL---LRTVVSVLKKSPPHLIKEIILVDDYSNDPEDGALLGKIEKVRV---LRNDR---------- 130 (501)
T ss_dssp CEEEEEEESSCCHHHH---HHHHHHHHHHSCGGGEEEEEEEECSCSCTHHHHGGGGBTTEEE---EECSS----------
T ss_pred CEEEEEEeCcCcHHHH---HHHHHHHHhhCchhhceeEEEEECCCCchHHHHHHhcCCCEEE---EECCC----------
Confidence 456666677863 44 3445677665432 21 24455555444443322222233332 22111
Q ss_pred chhhhhHhHhhhhccCcCeEEEecCCeEEcCC
Q psy7288 82 DLGITFTKIHAWRLTQYSKCVFLDADVLIVQN 113 (518)
Q Consensus 82 ~~~~tftKL~~w~L~eydKVVYLDaD~LVl~n 113 (518)
..+....+.........+-|+|||+|+++..+
T Consensus 131 n~G~~~A~N~G~~~A~gd~i~flD~D~~~~p~ 162 (501)
T 2ffu_A 131 REGLMRSRVRGADAAQAKVLTFLDSHCECNEH 162 (501)
T ss_dssp CCHHHHHHHHHHHHCCSSEEEECCSSEEECTT
T ss_pred CcCHHHHHHHHHHhcCCCEEEEECCCcccCcc
Confidence 12334445555666778999999999998754
No 54
>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17
Probab=51.83 E-value=24 Score=36.43 Aligned_cols=95 Identities=16% Similarity=0.131 Sum_probs=50.1
Q ss_pred CCEEEEEEecChhhHHHHHHHHHHHHhhCCCC-e-EEEEECCCCCH-HHHHHHHhc---CC-eEEEEeeeCCCchhhhcc
Q psy7288 5 TGTAWVTLATNDSYALGALVVANSLKRVNTVH-D-LAILITPGVTL-AMKNELLKV---FN-FVKEVDVFDSRDETNLRL 77 (518)
Q Consensus 5 ~~~A~VTl~tnd~Yl~ga~VL~~SLr~~~s~~-~-lvvLvt~~vs~-~~r~~L~~~---~~-~v~~V~~l~~~d~~~l~~ 77 (518)
.+...|..+.|.. ...+.-++.||.+..... . =+|+|+++-++ ...+.|+++ +. .++.|. ... +
T Consensus 29 p~vSVIIp~yN~~-~~~l~~~l~Sl~~q~~~~~~~EIIvVDd~S~d~~t~~~l~~~~~~~~~~v~vi~---~~~--n--- 99 (472)
T 1xhb_A 29 PTTSVVIVFHNEA-WSTLLRTVHSVINRSPRHMIEEIVLVDDASERDFLKRPLESYVKKLKVPVHVIR---MEQ--R--- 99 (472)
T ss_dssp CCEEEEEEESSCC-HHHHHHHHHHHHHSSCGGGEEEEEEEECSCCCGGGTHHHHHHHHSSSSCEEEEE---CSS--C---
T ss_pred CCeEEEEEeCCCC-HHHHHHHHHHHHhcCcHhHceEEEEEECCCCcHHHHHHHHHHHHHCCCcEEEEE---CCC--C---
Confidence 3566676677754 122334567887754322 1 24455544333 344444432 22 333322 211 1
Q ss_pred cCCCchhhhhHhHhhhhccCcCeEEEecCCeEEcCC
Q psy7288 78 LSRPDLGITFTKIHAWRLTQYSKCVFLDADVLIVQN 113 (518)
Q Consensus 78 ~~rp~~~~tftKL~~w~L~eydKVVYLDaD~LVl~n 113 (518)
.+..-.+.........+-|+|||+|+++..+
T Consensus 100 -----~G~~~a~N~g~~~A~gd~i~flD~D~~~~p~ 130 (472)
T 1xhb_A 100 -----SGLIRARLKGAAVSRGQVITFLDAHCECTAG 130 (472)
T ss_dssp -----CCHHHHHHHHHHHCCSSEEEEEESSEEECTT
T ss_pred -----CChHHHHHHHHHhccCCeEEEECCCeEeCcc
Confidence 1222334445556678999999999998765
No 55
>2l5f_A PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA, FBP11, protein binding; NMR {Homo sapiens}
Probab=51.60 E-value=5.6 Score=32.77 Aligned_cols=74 Identities=19% Similarity=0.235 Sum_probs=45.0
Q ss_pred CCCCCCCCccccccccceeeecccchhhHHHhhhHhhhhccccCCCCCCCcccccchhhcccccccCCCCCcCchhhHHH
Q psy7288 270 LGPLPPGWEQARTAEGQVYYLKGVLFMYTRLQAGLARALAQVPIGTPISAEQLAYEDHIHRQHWEEGHIDYLGKDSWDNI 349 (518)
Q Consensus 270 ~~~l~~gwe~a~t~~g~~y~~~~~~~~~~~~~~~~a~~~sq~~i~~~~~~~~~~~ee~~rr~~WE~G~iDYmG~dsf~nI 349 (518)
..+|+.+|+...+++|..||.|+.++..+ ++.... .....+.......|++- .+=.|+-.|-|.
T Consensus 9 ~~~lp~~W~e~~~~~Gr~YYyN~~T~~s~-We~P~~--------------~~~~~e~~~~~~~W~~~-~~~~Gr~Yy~N~ 72 (92)
T 2l5f_A 9 ASGAKSMWTEHKSPDGRTYYYNTETKQST-WEKPDD--------------LKTPAEQLLSKCPWKEY-KSDSGKTYYYNS 72 (92)
T ss_dssp TTBTTTTEEEEECTTSCEEEEETTTTEEE-SSCSGG--------------GTCHHHHHHHSCSEEEE-ECTTCCEEEEET
T ss_pred CCCCCCCcEEEEcCCCCEEEEECCCCcee-cccCcc--------------ccccccccccccceEEE-ECCCCCEEEEEC
Confidence 35789999999999999999999877543 111100 00000111235678773 233566666688
Q ss_pred HHHhhhccCC
Q psy7288 350 WKKISQTIEP 359 (518)
Q Consensus 350 qkKld~~L~~ 359 (518)
.-+..+|-.+
T Consensus 73 ~T~~s~We~P 82 (92)
T 2l5f_A 73 QTKESRWAKP 82 (92)
T ss_dssp TTTEEESCCC
T ss_pred CCCCeeccCc
Confidence 7777776544
No 56
>2p6w_A VP54, putative glycosyltransferase (mannosyltransferase in glycosylating the PBCV-1 major...; HET: FLC; 1.60A {Paramecium bursaria chlorella virus 1} PDB: 2p72_A* 2p73_A*
Probab=41.57 E-value=43 Score=31.63 Aligned_cols=68 Identities=13% Similarity=0.163 Sum_probs=38.0
Q ss_pred hhhhhHhHhhhh-----ccCcCeEEEecCCeEEcC-----CChhhhCCCCcccccCCCC-----C-CCCCceEEEEeCCh
Q psy7288 83 LGITFTKIHAWR-----LTQYSKCVFLDADVLIVQ-----NCDELFDREELSAAPDAGW-----P-DCFNSGVFVFKPSE 146 (518)
Q Consensus 83 ~~~tftKL~~w~-----L~eydKVVYLDaD~LVl~-----nIDeLF~~~elaAapD~gw-----p-~~FNSGVmVi~Ps~ 146 (518)
+...|.|+++-+ ..+-+=+-|||+|++|.. .|..-.+++..-.+. .|| - .-+|+|||++.-+.
T Consensus 53 ~a~eW~ksW~IR~AM~khPeAEWfWWLDsDAlIMDmnf~lPLe~yldl~~~Nlvv-HGw~e~~~~~~~lNtGvfL~~~~~ 131 (213)
T 2p6w_A 53 HALHFRRSWIIQQAAEKFPSTEWFLWLDSDVYVNPKNKNKPITSFIDLSDPNILY-HTFHEAPWGSYPINTGVKFVHKDA 131 (213)
T ss_dssp HHHHHTHHHHHHHHHHHCTTCSEEEEECTTEEECGGGTTSCGGGTCCCCCTTCCE-EEECCTTTSSSSCCTTEEEEEGGG
T ss_pred hcccchhhHHHHHHHHHCCCceEEEEecCCceeecCCCCCcHHHccccccCceee-ccccccccccccccceeeeecccc
Confidence 334455655544 357899999999999982 121111222111111 122 2 24799999988765
Q ss_pred HHHHH
Q psy7288 147 STYNA 151 (518)
Q Consensus 147 ~~~~~ 151 (518)
-..++
T Consensus 132 ~~irn 136 (213)
T 2p6w_A 132 LEIEK 136 (213)
T ss_dssp HHHHH
T ss_pred hhhhh
Confidence 44333
No 57
>2ysi_A Transcription elongation regulator 1; Ca150, FBP28, WW domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.22.1.1
Probab=39.48 E-value=14 Score=25.77 Aligned_cols=26 Identities=23% Similarity=0.433 Sum_probs=22.2
Q ss_pred CCCCCCCCccccccccceeeecccch
Q psy7288 270 LGPLPPGWEQARTAEGQVYYLKGVLF 295 (518)
Q Consensus 270 ~~~l~~gwe~a~t~~g~~y~~~~~~~ 295 (518)
..+++.+|....+.+|..||.|..+.
T Consensus 5 ~~~~~~~W~e~~~~~G~~YYyN~~T~ 30 (40)
T 2ysi_A 5 SSGTEEIWVENKTPDGKVYYYNARTR 30 (40)
T ss_dssp CCCCCCSEEEEECTTSCEEEEETTTC
T ss_pred cCCCCCCCEEEECCCCCEEEEECCCC
Confidence 45778899999999999999997655
No 58
>1s4n_A Glycolipid 2-alpha-mannosyltransferase; alpha/beta fold, nucleotide-binding domain, rossmann fold; HET: NAG BMA MAN NDG; 2.01A {Saccharomyces cerevisiae} SCOP: c.68.1.16 PDB: 1s4o_A* 1s4p_A*
Probab=32.42 E-value=1.7e+02 Score=29.87 Aligned_cols=115 Identities=17% Similarity=0.163 Sum_probs=71.6
Q ss_pred CCCEEEEEEecChhhHHHHHHHHHHHHhh-CC--CCeEEEEECCCCCHHHHHHHHhcCC-eEEEEe----eeCCCch---
Q psy7288 4 VTGTAWVTLATNDSYALGALVVANSLKRV-NT--VHDLAILITPGVTLAMKNELLKVFN-FVKEVD----VFDSRDE--- 72 (518)
Q Consensus 4 ~~~~A~VTl~tnd~Yl~ga~VL~~SLr~~-~s--~~~lvvLvt~~vs~~~r~~L~~~~~-~v~~V~----~l~~~d~--- 72 (518)
..+-|||+|+-|.. |.+++-.++||-++ |. .||.|+|-+..++++-++.++.+-. .+.... ....++.
T Consensus 26 r~nAtfV~L~RN~e-l~~~l~Si~~vE~rFN~~y~YpwvFlNd~pFteeFk~~~~~~~sg~v~Fg~Ip~e~W~~P~~Id~ 104 (348)
T 1s4n_A 26 KPKACYVTLVRNKE-LKGLLSSIKYVENKINKKFPYPWVFLNDEPFTEEFKEAVTKAVSSEVKFGILPKEHWSYPEWINQ 104 (348)
T ss_dssp CCCEEEEEECCGGG-HHHHHHHHHHHHHHTTTTSCCCEEEEESSCCCHHHHHHHHHHCSSCEEEEECCGGGSSCCTTSCH
T ss_pred CCceEEEEEeccHH-HHHHHHHHHHHHHHhhccCCCCEEEecCCCCCHHHHHHHHHhcCcceEEEEcCHHHcCCCCCcCH
Confidence 56789999998754 88999999999765 32 6899999998999998888877532 222211 1111211
Q ss_pred hh----hcc----c--CCCchhh---hhHhHhhhh---ccCcCeEEEecCCeEEcCCCh-hhhC
Q psy7288 73 TN----LRL----L--SRPDLGI---TFTKIHAWR---LTQYSKCVFLDADVLIVQNCD-ELFD 119 (518)
Q Consensus 73 ~~----l~~----~--~rp~~~~---tftKL~~w~---L~eydKVVYLDaD~LVl~nID-eLF~ 119 (518)
.. ... + +...... .|.--+.|+ |.+|+=.-=++.|+-+..+|+ ++|.
T Consensus 105 ~~a~~~~~~~~~~i~Yg~s~sYr~MCRf~SG~F~~h~~l~~YdyYWRvEPdv~~~CDi~YDpF~ 168 (348)
T 1s4n_A 105 TKAAEIRADAATKYIYGGSESYRHMCRYQSGFFWRHELLEEYDWYWRVEPDIKLYCDINYDVFK 168 (348)
T ss_dssp HHHHHHHHHHTTTSTTTTCHHHHHHHHHHHHTGGGSGGGTTCSEEEECCTTCEECSCCCSCHHH
T ss_pred HHHHHHHHHHhcCCccCCCcchhhhhhhhhhhhccCcccccCceEEEeCCCceeecCCCCCccH
Confidence 00 000 0 0100000 111122333 568999999999999999998 6664
No 59
>2jx8_A Hpcif1, phosphorylated CTD-interacting factor 1; protein fragment, WW domain, triple-standed beta-sheet, alpha-helix, nucleus, phosphorylation; NMR {Homo sapiens}
Probab=32.19 E-value=8.1 Score=28.64 Aligned_cols=25 Identities=24% Similarity=0.537 Sum_probs=20.3
Q ss_pred CCCCCCccccc-cccceeeecccchh
Q psy7288 272 PLPPGWEQART-AEGQVYYLKGVLFM 296 (518)
Q Consensus 272 ~l~~gwe~a~t-~~g~~y~~~~~~~~ 296 (518)
.|+.||+...+ ..|..||.|+.+..
T Consensus 10 ~LP~gW~~~~~~~~gr~YY~N~~T~~ 35 (52)
T 2jx8_A 10 LVHAGWEKCWSRRENRPYYFNRFTNQ 35 (52)
T ss_dssp HHHHTCCEEEETTTTEEEEEETTTTE
T ss_pred CCCcCcEEEEccccCCEEEEECCCCC
Confidence 47889998776 57999999987764
No 60
>1ywi_A Formin-binding protein 3; WW domain, class II, proline-rich peptides, protein-protein interactions, structural protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1ywj_A 1zr7_A 2dyf_A
Probab=28.55 E-value=19 Score=25.11 Aligned_cols=26 Identities=19% Similarity=0.552 Sum_probs=18.5
Q ss_pred CCCCCCCCccccccccceeeecccch
Q psy7288 270 LGPLPPGWEQARTAEGQVYYLKGVLF 295 (518)
Q Consensus 270 ~~~l~~gwe~a~t~~g~~y~~~~~~~ 295 (518)
.+.++.+|+...+.+|..||.|..+.
T Consensus 7 ~~~~~~~W~e~~~~~G~~YYyN~~T~ 32 (41)
T 1ywi_A 7 VGSAKSMWTEHKSPDGRTYYYNTETK 32 (41)
T ss_dssp -----CCEEEEEETTTEEEEEETTTT
T ss_pred CCCCCCCcEEEECCCCCEEEEECCCC
Confidence 34568899999999999999997654
No 61
>2jxw_A WW domain-binding protein 4; WW domain containing protein, FBP21, WBP4, metal- binding, mRNA processing, mRNA splicing, nucleus, polymorphism; NMR {Homo sapiens}
Probab=24.41 E-value=29 Score=27.18 Aligned_cols=25 Identities=16% Similarity=0.329 Sum_probs=21.7
Q ss_pred CCCCCCCccccccccceeeecccch
Q psy7288 271 GPLPPGWEQARTAEGQVYYLKGVLF 295 (518)
Q Consensus 271 ~~l~~gwe~a~t~~g~~y~~~~~~~ 295 (518)
..++.+|+...+.+|.+||.|+.+.
T Consensus 42 ~~~~~~W~~~~~~~Gr~YyyN~~T~ 66 (75)
T 2jxw_A 42 TAVKTVWVEGLSEDGFTYYYNTETG 66 (75)
T ss_dssp SSCCCSEEEEEETTTEEEEEETTTT
T ss_pred cCCCccEEEEECCCCCEEEEECcCC
Confidence 4678899999999999999998665
No 62
>2l5f_A PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA, FBP11, protein binding; NMR {Homo sapiens}
Probab=24.27 E-value=22 Score=29.12 Aligned_cols=25 Identities=16% Similarity=0.355 Sum_probs=21.3
Q ss_pred CCCCCccccccccceeeecccchhh
Q psy7288 273 LPPGWEQARTAEGQVYYLKGVLFMY 297 (518)
Q Consensus 273 l~~gwe~a~t~~g~~y~~~~~~~~~ 297 (518)
++.+|+...+.+|.+||.|+.+...
T Consensus 53 ~~~~W~~~~~~~Gr~Yy~N~~T~~s 77 (92)
T 2l5f_A 53 SKCPWKEYKSDSGKTYYYNSQTKES 77 (92)
T ss_dssp HSCSEEEEECTTCCEEEEETTTTEE
T ss_pred cccceEEEECCCCCEEEEECCCCCe
Confidence 5789999999999999999877643
No 63
>1e0l_A Formin binding protein; SH3 domain, WW domain, FBP28, signal transduction; NMR {Mus musculus} SCOP: b.72.1.1 PDB: 2jup_W 2rly_W 2rm0_W 2nnt_A
Probab=24.22 E-value=40 Score=22.83 Aligned_cols=24 Identities=25% Similarity=0.614 Sum_probs=19.9
Q ss_pred CCCCCCccccccccceeeecccch
Q psy7288 272 PLPPGWEQARTAEGQVYYLKGVLF 295 (518)
Q Consensus 272 ~l~~gwe~a~t~~g~~y~~~~~~~ 295 (518)
....+|....+.+|..||.|..+.
T Consensus 3 ~~~~~W~e~~~~~G~~YYyN~~T~ 26 (37)
T 1e0l_A 3 TAVSEWTEYKTADGKTYYYNNRTL 26 (37)
T ss_dssp SSSCSCEEEECTTSCEEEEETTTT
T ss_pred CCCCCeEEEECCCCCEEEEECCCC
Confidence 356789999999999999997554
No 64
>2gak_A Beta-1,6-N-acetylglucosaminyltransferase; glycoprotein, CIS-peptide, dimer; HET: NAG; 2.00A {Mus musculus} PDB: 2gam_A* 3otk_A*
Probab=22.92 E-value=4.8e+02 Score=26.50 Aligned_cols=103 Identities=6% Similarity=-0.022 Sum_probs=57.8
Q ss_pred CCEEEEEEecChhhHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHH---hcCCeEEEEeeeCCCchhhhcccCCC
Q psy7288 5 TGTAWVTLATNDSYALGALVVANSLKRVNTVHDLAILITPGVTLAMKNELL---KVFNFVKEVDVFDSRDETNLRLLSRP 81 (518)
Q Consensus 5 ~~~A~VTl~tnd~Yl~ga~VL~~SLr~~~s~~~lvvLvt~~vs~~~r~~L~---~~~~~v~~V~~l~~~d~~~l~~~~rp 81 (518)
-+.||+.++.++ + ....-|++.| .++...++|.++...+...+..+. ..+..|..+. ...... -.
T Consensus 84 ~kiAflil~h~d-~-~~l~rll~~l--y~p~n~y~IHvD~ks~~~~~~~~~~~~~~f~NV~v~~---~~~~v~-----WG 151 (391)
T 2gak_A 84 FPIAYSIVVHHK-I-EMLDRLLRAI--YMPQNFYCIHVDRKAEESFLAAVQGIASCFDNVFVAS---QLESVV-----YA 151 (391)
T ss_dssp SCEEEEEEECSC-H-HHHHHHHHHH--CCTTSEEEEEECTTSCHHHHHHHHHHHHTCTTEEECS---SCCCCC-----TT
T ss_pred CCEEEEEEecCC-H-HHHHHHHHHH--hCCCCeEEEEEeCCCCHHHHHHHHHHHhcCCCEEEec---cCcccc-----cC
Confidence 479999988654 3 4444454444 356667778888777765444432 3344443221 110000 00
Q ss_pred chhhhhHhHhhhh--c---cCcCeEEEecCCeEEcCCChhhhC
Q psy7288 82 DLGITFTKIHAWR--L---TQYSKCVFLDADVLIVQNCDELFD 119 (518)
Q Consensus 82 ~~~~tftKL~~w~--L---~eydKVVYLDaD~LVl~nIDeLF~ 119 (518)
.+...-.-++|.. | .+++.++.|...-+.+.+.++|.+
T Consensus 152 g~S~v~A~l~ll~~aL~~~~~w~yfilLSgsD~PLkt~~~i~~ 194 (391)
T 2gak_A 152 SWTRVKADLNCMKDLYRMNANWKYLINLCGMDFPIKTNLEIVR 194 (391)
T ss_dssp SHHHHHHHHHHHHHHHHHCSCCCEEEEEETTCEESSCHHHHHH
T ss_pred CchHHHHHHHHHHHHHhcCCCCCEEEEecCCCccccCHHHHHH
Confidence 0111111122222 2 379999999999999999999854
No 65
>2jxw_A WW domain-binding protein 4; WW domain containing protein, FBP21, WBP4, metal- binding, mRNA processing, mRNA splicing, nucleus, polymorphism; NMR {Homo sapiens}
Probab=22.49 E-value=35 Score=26.67 Aligned_cols=71 Identities=18% Similarity=0.177 Sum_probs=41.3
Q ss_pred CCCCCCccccccccceeeecccchhhHHHhhhHhhhhccccCCCCCCCcccccchhhcccccccCCCCCcCchhhHHHHH
Q psy7288 272 PLPPGWEQARTAEGQVYYLKGVLFMYTRLQAGLARALAQVPIGTPISAEQLAYEDHIHRQHWEEGHIDYLGKDSWDNIWK 351 (518)
Q Consensus 272 ~l~~gwe~a~t~~g~~y~~~~~~~~~~~~~~~~a~~~sq~~i~~~~~~~~~~~ee~~rr~~WE~G~iDYmG~dsf~nIqk 351 (518)
+...+|+...+++|..||.|+.+...+ +.... .+ . . ..+.......|++-.-+ .|+-.|-|..-
T Consensus 2 ~~~~~W~e~~~~~G~~YYyN~~T~~s~-We~P~-----~~--~----~---~~e~~~~~~~W~~~~~~-~Gr~YyyN~~T 65 (75)
T 2jxw_A 2 PSKGRWVEGITSEGYHYYYDLISGASQ-WEKPE-----GF--Q----G---DLKKTAVKTVWVEGLSE-DGFTYYYNTET 65 (75)
T ss_dssp CCCCCEEEEEETTTEEEEEETTTTEEE-CSCCS-----SC--S----S---CCSSSSCCCSEEEEEET-TTEEEEEETTT
T ss_pred CCCCCcEEEECCCCCEEEEECCCCCEe-ecCCC-----cc--c----c---cccccCCCccEEEEECC-CCCEEEEECcC
Confidence 345789999999999999999877543 21110 00 0 0 01112335678775333 57766667766
Q ss_pred HhhhccC
Q psy7288 352 KISQTIE 358 (518)
Q Consensus 352 Kld~~L~ 358 (518)
+..++-.
T Consensus 66 ~~s~We~ 72 (75)
T 2jxw_A 66 GESRWEK 72 (75)
T ss_dssp TEEESSC
T ss_pred CCEeccC
Confidence 6555543
No 66
>1o7q_A N-acetyllactosaminide alpha-1,3- galactosyltransferase; 3-galactosyltransferase-UDP complex, glycosyltransferase, glycoprotein, transmembrane; HET: GAL NAG UDP; 1.3A {Bos taurus} SCOP: c.68.1.9 PDB: 1gwv_A* 1gx0_A* 1gww_A* 1k4v_A* 1gx4_A* 2jco_A 1g8o_A* 1fg5_N* 1g93_A* 2wgz_A* 1o7o_A* 2vs4_A* 2jck_A* 2jcl_A 2vfz_A* 2vs3_A* 1vzu_A* 1vzx_A* 1vzt_A* 2jcj_A* ...
Probab=22.44 E-value=1.2e+02 Score=30.19 Aligned_cols=20 Identities=10% Similarity=0.142 Sum_probs=18.1
Q ss_pred cCcCeEEEecCCeEEcCCCh
Q psy7288 96 TQYSKCVFLDADVLIVQNCD 115 (518)
Q Consensus 96 ~eydKVVYLDaD~LVl~nID 115 (518)
-++|=++++|+|+++.+++.
T Consensus 137 ~evDYLf~~dvd~~F~~~vG 156 (289)
T 1o7q_A 137 HEVDFLFCMDVDQVFQDKFG 156 (289)
T ss_dssp HHCSEEEEECSSEEECSCBC
T ss_pred hcCCEEEEeeCCcEeeccCC
Confidence 47899999999999999884
No 67
>1e0n_A Hypothetical protein; YJQ8WW domain, WW domain, saccharomyces cerevisae, YJQ8 protein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1
Probab=22.30 E-value=32 Score=21.90 Aligned_cols=20 Identities=30% Similarity=0.634 Sum_probs=16.2
Q ss_pred CCCccccccccceeeecccch
Q psy7288 275 PGWEQARTAEGQVYYLKGVLF 295 (518)
Q Consensus 275 ~gwe~a~t~~g~~y~~~~~~~ 295 (518)
+||+ .....|..||.|..++
T Consensus 1 ~gWe-~~~~~g~~YYyN~~T~ 20 (27)
T 1e0n_A 1 PGWE-IIHENGRPLYYNAEQK 20 (27)
T ss_dssp CCEE-EEESSSSEEEEETTTT
T ss_pred CCCe-EECCCCCeEEEECCCC
Confidence 4788 7778999999987655
Done!