RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy7288
(518 letters)
>gnl|CDD|133018 cd02537, GT8_Glycogenin, Glycogenin belongs the GT 8 family and
initiates the biosynthesis of glycogen. Glycogenin
initiates the biosynthesis of glycogen by incorporating
glucose residues through a self-glucosylation reaction
at a Tyr residue, and then acts as substrate for chain
elongation by glycogen synthase and branching enzyme. It
contains a conserved DxD motif and an N-terminal
beta-alpha-beta Rossmann-like fold that are common to
the nucleotide-binding domains of most
glycosyltransferases. The DxD motif is essential for
coordination of the catalytic divalent cation, most
commonly Mn2+. Glycogenin can be classified as a
retaining glycosyltransferase, based on the relative
anomeric stereochemistry of the substrate and product in
the reaction catalyzed. It is placed in
glycosyltransferase family 8 which includes
lipopolysaccharide glucose and galactose transferases
and galactinol synthases.
Length = 240
Score = 231 bits (592), Expect = 3e-73
Identities = 81/159 (50%), Positives = 104/159 (65%), Gaps = 3/159 (1%)
Query: 8 AWVTLATNDSYALGALVVANSLKRVNTVHDLAILITPGVTLAMKNELLKVFNFVKEVDVF 67
A+VTL TND Y GALV+ SL++V + +DL +L+TPGV+ + L +V V+EV+
Sbjct: 2 AYVTLLTNDDYLPGALVLGYSLRKVGSSYDLVVLVTPGVSEESREALEEVGWIVREVEPI 61
Query: 68 DSRDETNLRLLSRPDLGITFTKIHAWRLTQYSKCVFLDADVLIVQNCDELFDRE-ELSAA 126
D D NL L RP T+TK+ W LT+Y K VFLDAD L+++N DELFD E +AA
Sbjct: 62 DPPDSANL--LKRPRFKDTYTKLRLWNLTEYDKVVFLDADTLVLRNIDELFDLPGEFAAA 119
Query: 127 PDAGWPDCFNSGVFVFKPSESTYNALVEFALVNGSFDDA 165
PD GWPD FNSGVFV KPSE T+N L++ SFD
Sbjct: 120 PDCGWPDLFNSGVFVLKPSEETFNDLLDALQDTPSFDGG 158
>gnl|CDD|216536 pfam01501, Glyco_transf_8, Glycosyl transferase family 8. This
family includes enzymes that transfer sugar residues to
donor molecules. Members of this family are involved in
lipopolysaccharide biosynthesis and glycogen synthesis.
This family includes Lipopolysaccharide
galactosyltransferase, lipopolysaccharide
glucosyltransferase 1, and glycogenin
glucosyltransferase.
Length = 248
Score = 142 bits (359), Expect = 5e-39
Identities = 53/198 (26%), Positives = 88/198 (44%), Gaps = 31/198 (15%)
Query: 9 WVTLATNDSYALGALVVANSLKRVNT--VHDLAILITPGVTLAMKNELLKVFNFVKEVDV 66
+ LA +D+Y LGA V+ SL N+ +H L ++T V+ + +L + + V EVDV
Sbjct: 1 VIVLALDDNYVLGAGVLIKSLLLHNSDPLHLLFHILTDDVSEENREKLNALGSQVSEVDV 60
Query: 67 FDSRDETNLR------LLSRPDLGITFTKIHAWRL-TQYSKCVFLDADVLIVQNCDELFD 119
+ D L LL + + + +++ L +Y K ++LDAD++++ + DELFD
Sbjct: 61 LEFSDIEMLSYLTLQLLLKKYWSLLNYARLYLADLFPKYDKILYLDADIIVLGDLDELFD 120
Query: 120 R--------------------EELSAAPDAGWPDCFNSGVFVFKPSESTYNALVEFALVN 159
E LSA P FN+GV V + L E +
Sbjct: 121 IDLGGKVAAAVEDFDRYPWFKEALSAELGIPPPCYFNAGVLVINLKKWREENLTEKLIEW 180
Query: 160 GSFDDATRQL--QKPLNM 175
+ + +L Q LN+
Sbjct: 181 LNKNGGLLKLGDQDILNI 198
>gnl|CDD|132996 cd00505, Glyco_transf_8, Members of glycosyltransferase family 8
(GT-8) are involved in lipopolysaccharide biosynthesis
and glycogen synthesis. Members of this family are
involved in lipopolysaccharide biosynthesis and glycogen
synthesis. GT-8 comprises enzymes with a number of known
activities: lipopolysaccharide galactosyltransferase,
lipopolysaccharide glucosyltransferase 1, glycogenin
glucosyltransferase, and
N-acetylglucosaminyltransferase. GT-8 enzymes contains a
conserved DXD motif which is essential in the
coordination of a catalytic divalent cation, most
commonly Mn2+.
Length = 246
Score = 91.0 bits (226), Expect = 1e-20
Identities = 71/240 (29%), Positives = 99/240 (41%), Gaps = 48/240 (20%)
Query: 8 AWVTLATNDSYALGALVVANSLKR--VNTVHDLAILITPGVTLAMKNEL---LKVFNFVK 62
A V +AT D Y GA+V+ S+ R + +L T ++ K L K++NF
Sbjct: 2 AIVIVATGDEYLRGAIVLMKSVLRHRTKPLR-FHVL-TNPLSDTFKAALDNLRKLYNFNY 59
Query: 63 EVDVFDSRDETNLRLLSRPDLGITFTKIHAWRLTQ-YSKCVFLDADVLIVQNCDELFDR- 120
E+ D D + L RP +T TK+H L Y K +++DAD+L++ + DEL+D
Sbjct: 60 ELIPVDILDSVDSEHLKRPIKIVTLTKLHLPNLVPDYDKILYVDADILVLTDIDELWDTP 119
Query: 121 ---EELSAAPDAGWP----------------DCFNSGVFVFKPSESTYNAL-------VE 154
+EL+AAPD G D FNSGVFV S+ N L
Sbjct: 120 LGGQELAAAPDPGDRREGKYYRQKRSHLAGPDYFNSGVFVVNLSKERRNQLLKVALEKWL 179
Query: 155 FALVNGSFDDATRQLQKPLNMRNLPKSFFQPPSTGSRSPS---VSSISHSRENSADSAFG 211
+L + S D Q LN F Q P P V R + AF
Sbjct: 180 QSLSSLSGGD-----QDLLN-----TFFKQVPFIVKSLPCIWNVRLTGCYRSLNCFKAFV 229
>gnl|CDD|133064 cd06914, GT8_GNT1, GNT1 is a fungal enzyme that belongs to the GT 8
family. N-acetylglucosaminyltransferase is a fungal
enzyme that catalyzes the addition of
N-acetyl-D-glucosamine to mannotetraose side chains by
an alpha 1-2 linkage during the synthesis of mannan. The
N-acetyl-D-glucosamine moiety in mannan plays a role in
the attachment of mannan to asparagine residues in
proteins. The mannotetraose and its
N-acetyl-D-glucosamine derivative side chains of mannan
are the principle immunochemical determinants on the
cell surface. N-acetylglucosaminyltransferase is a
member of glycosyltransferase family 8, which are,
based on the relative anomeric stereochemistry of the
substrate and product in the reaction catalyzed,
retaining glycosyltransferases.
Length = 278
Score = 74.4 bits (183), Expect = 9e-15
Identities = 44/159 (27%), Positives = 73/159 (45%), Gaps = 18/159 (11%)
Query: 8 AWVTLATNDSYALGALVVANSLKRVNTVHDLAILITPGVTLAMKNELLKVFNFVKEVDVF 67
A+V ATN Y AL++ L+R+ + L +L+ TL +N + D+
Sbjct: 2 AYVNYATNADYLCNALILFEQLRRLGSKAKLVLLVPE--TLLDRNL-----DDFVRRDLL 54
Query: 68 DSRDETNLRLLSRPDLGIT-------FTKIHAWRLTQYSKCVFLDADVLIVQNCDELFD- 119
+RD+ ++L+ TK+ A+ T+Y + ++ D+D +I DELF
Sbjct: 55 LARDKVIVKLIPVIIASGGDAYWAKSLTKLRAFNQTEYDRIIYFDSDSIIRHPMDELFFL 114
Query: 120 REELS-AAPDAGWPDCFNSGVFVFKPSESTYNALVEFAL 157
+ AAP A W F S + V KPS+ + L+ L
Sbjct: 115 PNYIKFAAPRAYWK--FASHLMVIKPSKEAFKELMTEIL 151
>gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed.
Length = 1068
Score = 75.8 bits (187), Expect = 2e-14
Identities = 41/165 (24%), Positives = 52/165 (31%), Gaps = 9/165 (5%)
Query: 363 PAAEPSQTTSESTEKKE--SSPPTVPEVKPAASVEPVPVSP-VPAPSTPPVATPTETTPA 419
P P E + E P V EV AA+VEPV +P V A + P
Sbjct: 846 PVVRPQDVQVEEQREAEEVQVQPVVAEVPVAAAVEPVVSAPVVEAVAEVVEEPVVVAEPQ 905
Query: 420 PVST-PTETAAASPVAAPVPSPTTPVESPAASTPVE-----APAAPVDTPVTPVASAPPT 473
P ET +AAPV + + E P + A T
Sbjct: 906 PEEVVVVETTHPEVIAAPVTEQPQVITESDVAVAQEVAEHAEPVVEPQDETADIEEAAET 965
Query: 474 PAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQTSQPCAST 518
PE V PAAP E + T V +Q +T
Sbjct: 966 AEVVVAEPEVVAQPAAPVVAEVAAEVETVTAVEPEVAPAQVPEAT 1010
Score = 64.3 bits (157), Expect = 9e-11
Identities = 30/163 (18%), Positives = 43/163 (26%), Gaps = 12/163 (7%)
Query: 355 QTIEPSKPPAAEP----SQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPV 410
Q E + + ++ + + S P V V EPV V+ V
Sbjct: 854 QVEEQREAEEVQVQPVVAEVPVAAAVEPVVSAPVVEAV-AEVVEEPVVVAEPQPEEVVVV 912
Query: 411 ATPTETTPAPVSTP--TETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVA 468
T T P ++ P + + V P E V
Sbjct: 913 ET---THPEVIAAPVTEQPQVITESDVAVAQEVAEHAEPVVEPQDETADIEEAAETAEVV 969
Query: 469 SAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQT 511
A P P PV + A +V E P P T
Sbjct: 970 VAEPEVVAQP--AAPVVAEVAAEVETVTAVEPEVAPAQVPEAT 1010
Score = 62.0 bits (151), Expect = 5e-10
Identities = 35/154 (22%), Positives = 41/154 (26%), Gaps = 13/154 (8%)
Query: 354 SQTIEPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSP-VPAPSTPPVAT 412
+ +E EP E + V P PV P V S VA
Sbjct: 885 APVVEAVAEVVEEPVVVA----EPQPEEVVVVETTHPEVIAAPVTEQPQVITESDVAVAQ 940
Query: 413 PTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPP 472
PV P + A AA E + P A V V V + P
Sbjct: 941 EVAEHAEPVVEPQDETADIEEAAETA-EVVVAEPEVVAQPAAPVVAEVAAEVETVTAVEP 999
Query: 473 TPAETPGAPEPV-------PSPAAPAPVETPSVP 499
A V P APAP P P
Sbjct: 1000 EVAPAQVPEATVEHNHATAPMTRAPAPEYVPEAP 1033
Score = 45.8 bits (109), Expect = 5e-05
Identities = 25/121 (20%), Positives = 32/121 (26%), Gaps = 7/121 (5%)
Query: 355 QTIEPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPT 414
Q I S A+ + + E T + A + E V P
Sbjct: 929 QVITESDVAVAQ--EVAEHAEPVVEPQDETADIEEAAETAEVVVAEPEVVAQPAAPVVAE 986
Query: 415 ETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTP 474
A P AP P VE A+ P+ AP P P S P
Sbjct: 987 VAAEVE-----TVTAVEPEVAPAQVPEATVEHNHATAPMTRAPAPEYVPEAPRHSDWQRP 1041
Query: 475 A 475
Sbjct: 1042 T 1042
Score = 33.5 bits (77), Expect = 0.30
Identities = 23/98 (23%), Positives = 25/98 (25%), Gaps = 17/98 (17%)
Query: 426 ETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVAS-APPTPAETPGAPEPV 484
E A A P P E PA +T P TP P A P P
Sbjct: 507 EEAMALPSEEEFAERKRP-EQPALATFAMPDVPPAPTPAEPAAPVVAAAPKAAAATPPAQ 565
Query: 485 P---------------SPAAPAPVETPSVPAEPTPTAS 507
P P E P+ AE P
Sbjct: 566 PGLLSRFFGALKALFSGGEETKPQEQPAPKAEAKPERQ 603
Score = 31.9 bits (73), Expect = 0.93
Identities = 26/105 (24%), Positives = 28/105 (26%), Gaps = 26/105 (24%)
Query: 424 PTETAAASPVAA--------PVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPA 475
P A ASP A PV P VE + V PV + P A
Sbjct: 826 PLTVACASPEMASGKVWIRYPVVRPQD--------VQVEEQREAEEVQVQPVVAEVPVAA 877
Query: 476 ETPGAPEPVPSPAAPAPV--ETPSVPAEPTPTASPVQTSQPCAST 518
P APV V EP A P T
Sbjct: 878 AVE--------PVVSAPVVEAVAEVVEEPVVVAEPQPEEVVVVET 914
Score = 31.9 bits (73), Expect = 1.1
Identities = 23/86 (26%), Positives = 31/86 (36%), Gaps = 5/86 (5%)
Query: 411 ATPTETTPAPVSTPTETAAAS---PVAAPVPSPTTPVESPAASTPVEAPAAPVDTP--VT 465
A P+E A P + A A+ P P P+P P A+ P A A P P ++
Sbjct: 511 ALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAPVVAAAPKAAAATPPAQPGLLS 570
Query: 466 PVASAPPTPAETPGAPEPVPSPAAPA 491
A +P PA A
Sbjct: 571 RFFGALKALFSGGEETKPQEQPAPKA 596
Score = 30.8 bits (70), Expect = 2.1
Identities = 16/43 (37%), Positives = 18/43 (41%)
Query: 405 PSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESP 447
P P +AT P TP E AA AAP + TP P
Sbjct: 524 PEQPALATFAMPDVPPAPTPAEPAAPVVAAAPKAAAATPPAQP 566
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional.
Length = 3151
Score = 73.0 bits (179), Expect = 2e-13
Identities = 41/156 (26%), Positives = 51/156 (32%), Gaps = 6/156 (3%)
Query: 359 PSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTP 418
P PP EP+ S P + PA P P + P+TP P
Sbjct: 2702 PPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPP 2761
Query: 419 APVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETP 478
P A+P A P T P + + + P+ P A P A P
Sbjct: 2762 TTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADP-PAAVLAPAAALPP 2820
Query: 479 GAPEPVPSPAAPAPVETPSVPAEPTPTASPVQTSQP 514
A SPA P P T + P P P P S P
Sbjct: 2821 AA-----SPAGPLPPPTSAQPTAPPPPPGPPPPSLP 2851
Score = 64.6 bits (157), Expect = 1e-10
Identities = 46/173 (26%), Positives = 64/173 (36%), Gaps = 19/173 (10%)
Query: 360 SKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPV--PVSPVPAPSTP-PVATPTET 416
++P A S++ + + P + PAA++ P P P+P P++ P A P
Sbjct: 2784 TRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPP 2843
Query: 417 TPAPVSTPTETAAA--------SPVAAPVPSPTTP-------VESPAASTPVEAPAAPVD 461
P P S P + A P +P P P + PA S E+ A P D
Sbjct: 2844 GPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPD 2903
Query: 462 TPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQTSQP 514
P P P P + P P P P P P P PT P +P
Sbjct: 2904 QPERPPQPQAPPPPQPQPQPPPPPQP-QPPPPPPPRPQPPLAPTTDPAGAGEP 2955
Score = 64.6 bits (157), Expect = 1e-10
Identities = 40/173 (23%), Positives = 56/173 (32%), Gaps = 20/173 (11%)
Query: 356 TIEPSKPPAAEPSQTTSESTEKKESSPPT----VPEVKPAASVEPVPVSPV---PAPSTP 408
T EP+ + +++SP P PA P + P + P
Sbjct: 2707 TPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGP 2766
Query: 409 PVATPTE---TTPAPVSTPTETAAASPVAAPVPSPTTPVESPA-------ASTPVEAPAA 458
P P P T A+ S +PSP P + PA A P +PA
Sbjct: 2767 PAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAG 2826
Query: 459 PVDTPVTPVASAPPTPAETPGAPEPVP---SPAAPAPVETPSVPAEPTPTASP 508
P+ P + +APP P P P+ +P PS P A
Sbjct: 2827 PLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPA 2879
Score = 63.4 bits (154), Expect = 2e-10
Identities = 37/168 (22%), Positives = 48/168 (28%), Gaps = 9/168 (5%)
Query: 359 PSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPV-PVSPVPAPSTPPVATPTETT 417
PP PS +E + P + + V A+
Sbjct: 2623 APDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQR 2682
Query: 418 PAPVSTPTETAAASPVAAPVPSPTTPVESPAAST--------PVEAPAAPVDTPVTPVAS 469
P + + + +A P P P TP +P A P A A P P
Sbjct: 2683 PRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPP 2742
Query: 470 APPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQTSQPCAS 517
A P TPG P P A P+ PA P T AS
Sbjct: 2743 AVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVAS 2790
Score = 61.9 bits (150), Expect = 5e-10
Identities = 40/171 (23%), Positives = 52/171 (30%), Gaps = 21/171 (12%)
Query: 359 PSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPV------PAPSTPPVAT 412
P+ + P + + SSPP P + AA V + P P P
Sbjct: 2656 PAPGRVSRPRRARRLGRAAQASSPPQRPR-RRAA---RPTVGSLTSLADPPPPPPTPEPA 2711
Query: 413 PTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPP 472
P A TP A+ A P P + P P P P + PP
Sbjct: 2712 PHALVSA---TPLPPGPAAARQASPALPAAPAPPAVPAGPA-TPGGPARPARPPTTAGPP 2767
Query: 473 TPAETPGAPEPVPSPAAPAP------VETPSVPAEPTPTASPVQTSQPCAS 517
PA P AP P P S+P+ P P P A+
Sbjct: 2768 APA-PPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAA 2817
Score = 60.7 bits (147), Expect = 1e-09
Identities = 46/173 (26%), Positives = 62/173 (35%), Gaps = 22/173 (12%)
Query: 359 PSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTP 418
P+ P A P + T + S ++P + P V PA + PP A+P P
Sbjct: 2772 PAAPAAGPPRRLTRPAVASLSESRESLP-SPWDPADPPAAVLA-PAAALPPAASPAGPLP 2829
Query: 419 APVSTPTETAAASPVAAPVPSPTTPVES-----------PAASTPVEAPAAPVDTPVTPV 467
P + A P P P+ P+ P + +P PAAP PV +
Sbjct: 2830 PP---TSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRRL 2886
Query: 468 ASAPPTP-----AETPGAPEPVPSPAAPA-PVETPSVPAEPTPTASPVQTSQP 514
A + A P PE P P AP P P P P P P +P
Sbjct: 2887 ARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRP 2939
Score = 60.0 bits (145), Expect = 2e-09
Identities = 35/160 (21%), Positives = 47/160 (29%), Gaps = 1/160 (0%)
Query: 360 SKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPA 419
PP+ P T + SP P P P P+ V+ P
Sbjct: 2611 PAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRL 2670
Query: 420 PVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPG 479
+ + P + S A P P + PP PA
Sbjct: 2671 GRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQ 2730
Query: 480 APEPVP-SPAAPAPVETPSVPAEPTPTASPVQTSQPCAST 518
A +P +PA PA P+ P P A P T+ P A
Sbjct: 2731 ASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPA 2770
Score = 57.3 bits (138), Expect = 2e-08
Identities = 38/163 (23%), Positives = 45/163 (27%), Gaps = 8/163 (4%)
Query: 360 SKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEP--------VPVSPVPAPSTPPVA 411
+ P P T+++ T P P + SV P SP P+ P
Sbjct: 2822 ASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARP 2881
Query: 412 TPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAP 471
VS TE+ A P P P P P P P P
Sbjct: 2882 PVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQP 2941
Query: 472 PTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQTSQP 514
P T A PS A P P VP V P
Sbjct: 2942 PLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQPAP 2984
Score = 49.9 bits (119), Expect = 3e-06
Identities = 43/182 (23%), Positives = 56/182 (30%), Gaps = 32/182 (17%)
Query: 347 DNIWKKISQTIEPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPS 406
D +W + P +P ++E EV VSP+P P
Sbjct: 295 DGVWGAALAGAPLALPAPPDPPPPAPAGDAEEEDDEDGAMEV----------VSPLPRPR 344
Query: 407 ---------------TPPVA----TPTETTPAPVSTPTETAAASP-VAAPVPSPTTPVES 446
TPP + + P S PT ++ A P +
Sbjct: 345 QHYPLGFPKRRRPTWTPPSSLEDLSAGRHHPKRASLPTRKRRSARHAATPFARGPGGDDQ 404
Query: 447 PAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTA 506
+ PV A P P ASAPP PA + EP S PAP PA T A
Sbjct: 405 TRPAAPVPAS-VPTPAPTPVPASAPPPPATPLPSAEP-GSDDGPAPPPERQPPAPATEPA 462
Query: 507 SP 508
Sbjct: 463 PD 464
Score = 49.9 bits (119), Expect = 3e-06
Identities = 42/179 (23%), Positives = 51/179 (28%), Gaps = 20/179 (11%)
Query: 354 SQTIEPSKPPAAEPSQTTSEST-----EKKESSPPTVPEVKPAASVEPVPVS----PVPA 404
+Q P PP P + + + P P KPAA P PV P +
Sbjct: 2834 AQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARP-PVRRLARPAVS 2892
Query: 405 PSTPPVATPTET-----TPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAP 459
ST A P + P P P P P P P P PA
Sbjct: 2893 RSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPA-- 2950
Query: 460 VDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQTSQPCAST 518
+ A P P P V P P PS A + T S S+
Sbjct: 2951 ---GAGEPSGAVPQPWLGALVPGRVAVPRFRVPQPAPSREAPASSTPPLTGHSLSRVSS 3006
Score = 46.9 bits (111), Expect = 2e-05
Identities = 42/149 (28%), Positives = 49/149 (32%), Gaps = 16/149 (10%)
Query: 382 PPTVPEVKPAASVEPVPVS-PVPAPSTP--------PVATPTETTP-APVSTP-----TE 426
PP P PAA VP P P PS P P A P P APV
Sbjct: 2553 PPLPPAAPPAAPDRSVPPPRPAPRPSEPAVTSRARRPDAPPQSARPRAPVDDRGDPRGPA 2612
Query: 427 TAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPV-ASAPPTPAETPGAPEPVP 485
+ P P P P SPAA+ P P V P P AP + A
Sbjct: 2613 PPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGR 2672
Query: 486 SPAAPAPVETPSVPAEPTPTASPVQTSQP 514
+ A +P + P A S + P
Sbjct: 2673 AAQASSPPQRPRRRAARPTVGSLTSLADP 2701
Score = 45.7 bits (108), Expect = 5e-05
Identities = 29/128 (22%), Positives = 40/128 (31%), Gaps = 7/128 (5%)
Query: 398 PVSPVPAPSTPPVATPTETTPAPVSTPTETAAAS----PVAAPVP-SPTTPVE--SPAAS 450
P P+P + P + P P P+E A S P A P P PV+
Sbjct: 2551 PPPPLPPAAPPAAPDRSVPPPRPAPRPSEPAVTSRARRPDAPPQSARPRAPVDDRGDPRG 2610
Query: 451 TPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQ 510
+P P P +P A P P P P + P+ P +
Sbjct: 2611 PAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRL 2670
Query: 511 TSQPCAST 518
AS+
Sbjct: 2671 GRAAQASS 2678
Score = 43.8 bits (103), Expect = 2e-04
Identities = 31/153 (20%), Positives = 43/153 (28%), Gaps = 7/153 (4%)
Query: 359 PSKPPAAEPSQTT---SESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTE 415
PS+ PAA+P+ + S T P E P P P P P
Sbjct: 2867 PSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPP 2926
Query: 416 TTPAPV----STPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAP 471
P P P A + A P+ V P V A V A +
Sbjct: 2927 PQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQPAPSR 2986
Query: 472 PTPAETPGAPEPVPSPAAPAPVETPSVPAEPTP 504
PA + + + ++ E P
Sbjct: 2987 EAPASSTPPLTGHSLSRVSSWASSLALHEETDP 3019
Score = 42.6 bits (100), Expect = 6e-04
Identities = 40/184 (21%), Positives = 56/184 (30%), Gaps = 34/184 (18%)
Query: 358 EPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTP--------- 408
E ++ P + + + P V A + +P P P P P
Sbjct: 270 ETARGATGPPPPPEAAAPNGAAAPPDGVWGAALAGAPLALPAPPDPPPPAPAGDAEEEDD 329
Query: 409 ---------PVATPTETTPAPVST---PTETAAAS----------PVAAPVPSPTTPVES 446
P+ P + P PT T +S P A +P+ +
Sbjct: 330 EDGAMEVVSPLPRPRQHYPLGFPKRRRPTWTPPSSLEDLSAGRHHPKRASLPT-RKRRSA 388
Query: 447 PAASTPVEAPAAPVDTP--VTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTP 504
A+TP D PV ++ PTPA TP P PA P P P P P
Sbjct: 389 RHAATPFARGPGGDDQTRPAAPVPASVPTPAPTPVPASAPPPPATPLPSAEPGSDDGPAP 448
Query: 505 TASP 508
Sbjct: 449 PPER 452
Score = 40.3 bits (94), Expect = 0.003
Identities = 35/176 (19%), Positives = 43/176 (24%), Gaps = 21/176 (11%)
Query: 359 PSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTP 418
P P P++ P P A P AP+ P E
Sbjct: 2475 PGAPVYRRPAEARFPFAAGAAPDPGGGGPPDPDAP----PAPSRLAPAILPDEPVGEPVH 2530
Query: 419 APVST---------PTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVAS 469
+ T + P P P P S P P+ P T
Sbjct: 2531 PRMLTWIRGLEELASDDAGDPPPPLPPAAPPAAPDRSVPPPRPAPRPSEPAVTSRARRPD 2590
Query: 470 APPTPA--ETPGAP------EPVPSPAAPAPVETPSVPAEPTPTASPVQTSQPCAS 517
APP A P PSP P P P+P A+ P
Sbjct: 2591 APPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTV 2646
Score = 39.9 bits (93), Expect = 0.004
Identities = 26/114 (22%), Positives = 33/114 (28%), Gaps = 3/114 (2%)
Query: 362 PPAAEPSQTTSESTEKKESSPPTVPEV-KPAASVEPVPVSPVPAPSTPPVATPTETTPA- 419
P A S + P PVP S P P+ PV PA
Sbjct: 375 PKRASLPTRKRRSARHAATPFARGPGGDDQTRPAAPVPASV-PTPAPTPVPASAPPPPAT 433
Query: 420 PVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPT 473
P+ + + P P P P PA P +A +D PP
Sbjct: 434 PLPSAEPGSDDGPAPPPERQPPAPATEPAPDDPDDATRKALDALRERRPPEPPG 487
Score = 39.9 bits (93), Expect = 0.004
Identities = 38/152 (25%), Positives = 51/152 (33%), Gaps = 16/152 (10%)
Query: 359 PSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTP 418
P+ P + ++ K +S PT + +A P + P P P
Sbjct: 357 PTWTPPSSLEDLSAGRHHPKRASLPT--RKRRSARHAATPFARGPGGDDQT--RPAAPVP 412
Query: 419 APVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETP 478
A V TP +PV A P P PA P P + D P P PP PA P
Sbjct: 413 ASVPTPA----PTPVPASAPPP------PATPLPSAEPGSD-DGPAPPPERQPPAPATEP 461
Query: 479 GAPEPVPSPAAPAPVETPSVPAEPTPTASPVQ 510
+P + P EP P A +
Sbjct: 462 APDDPDDATRKALDALRERRPPEP-PGADLAE 492
Score = 35.7 bits (82), Expect = 0.085
Identities = 21/117 (17%), Positives = 33/117 (28%), Gaps = 1/117 (0%)
Query: 353 ISQTIEPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVAT 412
+S++ E P +P + P P P P P P P
Sbjct: 2891 VSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRP-QPPLAPTTDP 2949
Query: 413 PTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVAS 469
P+ A P VP P +P+ P + ++ V+S
Sbjct: 2950 AGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQPAPSREAPASSTPPLTGHSLSRVSS 3006
Score = 33.0 bits (75), Expect = 0.48
Identities = 21/77 (27%), Positives = 24/77 (31%), Gaps = 3/77 (3%)
Query: 419 APVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETP 478
AP P A T P P A+ P A A P +A AP P
Sbjct: 254 APAPPPVVGEGADRAPETARGATGPPPPPEAAAPNGAAAPPDGVWGAALAGAPLA---LP 310
Query: 479 GAPEPVPSPAAPAPVET 495
P+P P A E
Sbjct: 311 APPDPPPPAPAGDAEEE 327
Score = 30.3 bits (68), Expect = 3.7
Identities = 24/101 (23%), Positives = 32/101 (31%), Gaps = 4/101 (3%)
Query: 399 VSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAA 458
+P P P A T + P A+ P + A P+ PA
Sbjct: 253 AAPAPPPVVGEGADRAPETARGATGPPPPPEAAAPNGAAAPPDGVWGAALAGAPLALPAP 312
Query: 459 PVDTPVTPVASAPPTPAETPGAPE---PVPSPAAPAPVETP 496
P P P A + GA E P+P P P+ P
Sbjct: 313 PDPPPPAP-AGDAEEEDDEDGAMEVVSPLPRPRQHYPLGFP 352
>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau;
Validated.
Length = 830
Score = 70.6 bits (173), Expect = 9e-13
Identities = 39/172 (22%), Positives = 54/172 (31%), Gaps = 15/172 (8%)
Query: 359 PSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTP 418
P++ A P+ + S+ P V V AA P + A +T A P P
Sbjct: 373 PARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAP 432
Query: 419 APVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETP 478
+ + AA P + + A S E A P + A A P +
Sbjct: 433 PATADRGDDAADGDAPVPAKAN---ARASADSRCDERDAQPPADSGSASAPASDAPPDAA 489
Query: 479 GAPEP------------VPSPAAPAPVETPSVPAEPTPTASPVQTSQPCAST 518
P P VP APA PA P A + P A+
Sbjct: 490 FEPAPRAAAPSAATPAAVPDARAPAAASREDAPAAAAPPAPEARPPTPAAAA 541
Score = 59.5 bits (144), Expect = 3e-09
Identities = 27/156 (17%), Positives = 43/156 (27%), Gaps = 7/156 (4%)
Query: 354 SQTIEPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPV---PAPSTPPV 410
+ + + K ++ P A+ P + A PV
Sbjct: 393 ASAVPAVTAVTGAAG---AALAPKAAAAAAATRAEAPPAAPAPPATADRGDDAADGDAPV 449
Query: 411 ATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASA 470
A + + A P A + ++P + AP A + TP A
Sbjct: 450 PAKANA-RASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVP 508
Query: 471 PPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTA 506
+ + A PAP P PA P A
Sbjct: 509 DARAPAAASREDAPAAAAPPAPEARPPTPAAAAPAA 544
Score = 57.6 bits (139), Expect = 1e-08
Identities = 25/127 (19%), Positives = 32/127 (25%), Gaps = 4/127 (3%)
Query: 390 PAASVEPVPVSPVPAPS--TPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESP 447
P V VPAP + T AA +P AA + T P
Sbjct: 368 PGGGVPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPP 427
Query: 448 AASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTAS 507
AA P D P A + + P + P A
Sbjct: 428 AAPAPPATADRGDDAADGDAPV--PAKANARASADSRCDERDAQPPADSGSASAPASDAP 485
Query: 508 PVQTSQP 514
P +P
Sbjct: 486 PDAAFEP 492
Score = 56.4 bits (136), Expect = 2e-08
Identities = 41/192 (21%), Positives = 53/192 (27%), Gaps = 31/192 (16%)
Query: 358 EPSKPPAAEPSQTTSESTEKKESSPPTVP---EVKPAASVEPVPVSPVPAPSTPPVATPT 414
PPAA T++ + VP + +A P + + P
Sbjct: 422 RAEAPPAAPAPPATADRGDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPA 481
Query: 415 ETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVE----APAAPVDTPVTPVASA 470
P + AA+P AA + AAS AP AP P TP A+A
Sbjct: 482 SDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPAAAAPPAPEARPPTPAAAA 541
Query: 471 PPTPA-----------------------ETPGAPEP-VPSPAAPAPVETPSVPAEPTPTA 506
P A A +P AAP P PTP A
Sbjct: 542 PAARAGGAAAALDVLRNAGMRVSSDRGARAAAAAKPAAAPAAAPKPAAPRVAVQVPTPRA 601
Query: 507 SPVQTSQPCAST 518
P
Sbjct: 602 RAATGDAPPNGA 613
Score = 54.5 bits (131), Expect = 1e-07
Identities = 26/120 (21%), Positives = 37/120 (30%), Gaps = 12/120 (10%)
Query: 404 APSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTP 463
P+ A P P + A+A P V +P A+ A AA
Sbjct: 372 VPARVAGAVPA---PGARAAAAVGASAVPAVTAVTGAAGAALAPKAA----AAAAATRAE 424
Query: 464 VTPVASAPPTPAETPGAPEPVPSP-----AAPAPVETPSVPAEPTPTASPVQTSQPCAST 518
P A APP A+ +P A A ++ + P A S P +
Sbjct: 425 APPAAPAPPATADRGDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDA 484
Score = 54.5 bits (131), Expect = 1e-07
Identities = 32/141 (22%), Positives = 43/141 (30%), Gaps = 9/141 (6%)
Query: 381 SPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSP 440
P V PA + V A + P V T A + AAA+ A +P
Sbjct: 372 VPARVAGAVPAPG--ARAAAAVGASAVPAVTAVT---GAAGAALAPKAAAAAAATRAEAP 426
Query: 441 TTPVESPAASTPVEAPAA-PVDTPVTPVASAPPTPAETPGAPEPVPSP---AAPAPVETP 496
PA + + A P A A +P +APA P
Sbjct: 427 PAAPAPPATADRGDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAPP 486
Query: 497 SVPAEPTPTASPVQTSQPCAS 517
EP P A+ + P A
Sbjct: 487 DAAFEPAPRAAAPSAATPAAV 507
Score = 52.9 bits (127), Expect = 3e-07
Identities = 41/174 (23%), Positives = 59/174 (33%), Gaps = 20/174 (11%)
Query: 359 PSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTP 418
+ + + + +S P + P A+ EP P + P+ +TP P
Sbjct: 456 RASADSRCDERDAQPPADSGSASAPA-SDAPPDAAFEPAPRAAAPSAATPAAVPDARA-P 513
Query: 419 APVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPV--------------DTPV 464
A S AAA+P A PT +PAA A A V
Sbjct: 514 AAASREDAPAAAAPPAPEARPPTPAAAAPAARAGGAAAALDVLRNAGMRVSSDRGARAAA 573
Query: 465 TPVASAPPTPAETPGAPE---PVPSPAAPAPV-ETPSVPAEPTPTASPVQTSQP 514
+A P A P AP VP+P A A + P A A+ + + P
Sbjct: 574 AAKPAAAPAAAPKPAAPRVAVQVPTPRARAATGDAPPNGAARAEQAAESRGAPP 627
Score = 52.2 bits (125), Expect = 5e-07
Identities = 40/190 (21%), Positives = 52/190 (27%), Gaps = 47/190 (24%)
Query: 360 SKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAP--STPPVATPTETT 417
S + + P ++ P +P A P A P+ T
Sbjct: 444 DGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAAT 503
Query: 418 PAPVSTPTETAAAS----PVAAPVPSPTTPVESPAASTPVE------------------- 454
PA V AAAS P AA P+P +PAA+ P
Sbjct: 504 PAAVPDARAPAAASREDAPAAAAPPAPEARPPTPAAAAPAARAGGAAAALDVLRNAGMRV 563
Query: 455 ------------APAAPVDTPVTPVASAPPTPAETPGAP----EPVPSPAAPAPVETPSV 498
PAA P A TP A + P+ AA A
Sbjct: 564 SSDRGARAAAAAKPAAAPAAAPKPAAPRVAVQVPTPRARAATGDAPPNGAARAE------ 617
Query: 499 PAEPTPTASP 508
A + A P
Sbjct: 618 QAAESRGAPP 627
Score = 42.9 bits (101), Expect = 4e-04
Identities = 36/147 (24%), Positives = 44/147 (29%), Gaps = 23/147 (15%)
Query: 359 PSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTP 418
+ P AA + + + AAS E P + P TP P
Sbjct: 483 DAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPAAAAPPAPEARPPTPAAAAP 542
Query: 419 APVSTPTETA---------------------AASPVAAPVPSPTTPVESPAASTPV-EAP 456
A + A AA P AAP +P A P A
Sbjct: 543 AARAGGAAAALDVLRNAGMRVSSDRGARAAAAAKPAAAPAAAPKPAAPRVAVQVPTPRAR 602
Query: 457 AAPVDTPVTPVASAPPTPAETPGAPEP 483
AA D P A A AE+ GAP P
Sbjct: 603 AATGDAPPNGAARAEQ-AAESRGAPPP 628
Score = 42.5 bits (100), Expect = 5e-04
Identities = 27/98 (27%), Positives = 32/98 (32%), Gaps = 4/98 (4%)
Query: 424 PTETAAASPVAAPVPSPTTPVESPAASTP--VEAPAAPVDTPVTPVASAPPTP-AETPGA 480
P T +P V +P A V A A P T VT A A P A A
Sbjct: 360 PAVTGGGAPGGGVPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAA 419
Query: 481 PE-PVPSPAAPAPVETPSVPAEPTPTASPVQTSQPCAS 517
PAAPAP T + +PV +
Sbjct: 420 ATRAEAPPAAPAPPATADRGDDAADGDAPVPAKANARA 457
Score = 29.8 bits (67), Expect = 4.8
Identities = 25/115 (21%), Positives = 28/115 (24%), Gaps = 34/115 (29%)
Query: 390 PAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAA-SPVAAPVPSPTTPVES-- 446
A +P PA V PT A AA + AA P E
Sbjct: 574 AAKPAAAPAAAPKPAAPRVAVQVPTPRARAATGDAPPNGAARAEQAAESRGAPPPWEDIP 633
Query: 447 -------------------------------PAASTPVEAPAAPVDTPVTPVASA 470
A P +APA PVDT P A
Sbjct: 634 PDDYVPLSADEGFGGPDDGFVPVFDSGPDDVRVAPKPADAPAPPVDTRPLPPAIP 688
>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 618
Score = 67.4 bits (165), Expect = 8e-12
Identities = 39/129 (30%), Positives = 52/129 (40%), Gaps = 3/129 (2%)
Query: 361 KPPAAEPSQTTSE-STEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPA 419
KP AA + +E T + + A+ P P + A ++ P A P PA
Sbjct: 365 KPAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPA 424
Query: 420 PVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDT-PVTPVASAPPTPAETP 478
PV+ P AA + A P+ +P A E A PV P VASA P PA P
Sbjct: 425 PVAAP-AAAAPAAAPAAAPAAVALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAP 483
Query: 479 GAPEPVPSP 487
A P+
Sbjct: 484 AAARLTPTE 492
Score = 66.7 bits (163), Expect = 1e-11
Identities = 36/124 (29%), Positives = 42/124 (33%), Gaps = 1/124 (0%)
Query: 389 KPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPA 448
KPAA+ E + P+ P A P A + AAA AA P+ PA
Sbjct: 365 KPAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPA 424
Query: 449 ASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASP 508
A A P A A APE V P AP E A P P A+P
Sbjct: 425 PVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPETVAIPVRVAP-EPAVASAAPAPAAAP 483
Query: 509 VQTS 512
Sbjct: 484 AAAR 487
Score = 65.5 bits (160), Expect = 3e-11
Identities = 31/130 (23%), Positives = 41/130 (31%), Gaps = 4/130 (3%)
Query: 377 KKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAP 436
K ++ + P +P AP A P + A A+P AA
Sbjct: 365 KPAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAAS---APAAPPAAA 421
Query: 437 VPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPA-APAPVET 495
P+P + A + A A V P A A P P P P+ A A
Sbjct: 422 PPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAA 481
Query: 496 PSVPAEPTPT 505
A TPT
Sbjct: 482 APAAARLTPT 491
Score = 62.0 bits (151), Expect = 4e-10
Identities = 31/118 (26%), Positives = 39/118 (33%), Gaps = 1/118 (0%)
Query: 359 PSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTP 418
K A P + +++ P PAA+ P AP PVA P P
Sbjct: 376 AEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPP-APVAAPAAAAP 434
Query: 419 APVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAE 476
A A A A P + V P P A A+ P A+A TP E
Sbjct: 435 AAAPAAAPAAVALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLTPTE 492
Score = 50.1 bits (120), Expect = 2e-06
Identities = 20/89 (22%), Positives = 27/89 (30%), Gaps = 7/89 (7%)
Query: 430 ASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPV----P 485
A+ A P+ P A+ P AP A A A A P P
Sbjct: 367 AAAAEAAAPAEKKTPARPEAAAPAAAPVAQ---AAAAPAPAAAPAAAASAPAAPPAAAPP 423
Query: 486 SPAAPAPVETPSVPAEPTPTASPVQTSQP 514
+P A P+ P A + + P
Sbjct: 424 APVAAPAAAAPAAAPAAAPAAVALAPAPP 452
Score = 46.6 bits (111), Expect = 2e-05
Identities = 20/72 (27%), Positives = 26/72 (36%), Gaps = 1/72 (1%)
Query: 445 ESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTP 504
+ A + P A+AP A AP P+ AA AP P A P P
Sbjct: 367 AAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPA-APPAAAPPAP 425
Query: 505 TASPVQTSQPCA 516
A+P + A
Sbjct: 426 VAAPAAAAPAAA 437
Score = 42.8 bits (101), Expect = 4e-04
Identities = 22/101 (21%), Positives = 30/101 (29%), Gaps = 5/101 (4%)
Query: 354 SQTIEPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATP 413
+ A + + +P P A+ + V PP
Sbjct: 397 AAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQAA 456
Query: 414 TETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVE 454
ET PV E A AS AP +P + A TP E
Sbjct: 457 PETVAIPVRVAPEPAVASAAPAPAAAP-----AAARLTPTE 492
Score = 35.8 bits (83), Expect = 0.052
Identities = 15/56 (26%), Positives = 21/56 (37%), Gaps = 1/56 (1%)
Query: 463 PVTPVASAPPTPAETPGAPE-PVPSPAAPAPVETPSVPAEPTPTASPVQTSQPCAS 517
P +A P +TP PE P+ A A PA A+ + P A+
Sbjct: 366 PAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAA 421
Score = 30.5 bits (69), Expect = 3.0
Identities = 16/78 (20%), Positives = 27/78 (34%), Gaps = 3/78 (3%)
Query: 358 EPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETT 417
+ P A + + + P +PA + + PA + TPTE
Sbjct: 438 PAAAPAAVALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARL---TPTEEG 494
Query: 418 PAPVSTPTETAAASPVAA 435
+T + AAA + A
Sbjct: 495 DVWHATVQQLAAAEAITA 512
>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau;
Validated.
Length = 824
Score = 66.5 bits (163), Expect = 2e-11
Identities = 29/128 (22%), Positives = 40/128 (31%), Gaps = 3/128 (2%)
Query: 390 PAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAA 449
A + A + P A P AP + AA+P AP P+P SPA
Sbjct: 387 VAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAG 446
Query: 450 STPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPV 509
+ P +P P SA P PA AP P+ +
Sbjct: 447 NAPAGGAPSP---PPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAP 503
Query: 510 QTSQPCAS 517
+ A+
Sbjct: 504 AGADDAAT 511
Score = 63.9 bits (156), Expect = 1e-10
Identities = 38/163 (23%), Positives = 52/163 (31%), Gaps = 6/163 (3%)
Query: 358 EPSKPPAAEPSQTTSESTEKKESSPPTVP---EVKPAASVEPVPVSPVPAPSTPPVATPT 414
P+ P A P+ + E + P V +V P+ A P
Sbjct: 620 APAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPA 679
Query: 415 ETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASA---P 471
PAP A + A P P+P + A P P P +A
Sbjct: 680 APPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPV 739
Query: 472 PTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQTSQP 514
P P E P+P +PA P P P+ A P P S+
Sbjct: 740 PLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEE 782
Score = 63.5 bits (155), Expect = 1e-10
Identities = 26/121 (21%), Positives = 37/121 (30%), Gaps = 2/121 (1%)
Query: 397 VPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAP 456
+ V+ + PA P A A+ A + P +PA + +P
Sbjct: 385 LGVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSP 444
Query: 457 AAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQTSQPCA 516
A P P+ P AP P PA P P A+P + P A
Sbjct: 445 AGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAP--PAAPAPAAAPAAPAAPAA 502
Query: 517 S 517
Sbjct: 503 P 503
Score = 63.5 bits (155), Expect = 1e-10
Identities = 31/139 (22%), Positives = 42/139 (30%)
Query: 376 EKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAA 435
E+ E A+ P + PA + P A AP A +P A
Sbjct: 379 ERLERRLGVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPA 438
Query: 436 PVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVET 495
P P + AAP P A+AP A AP P+PAA
Sbjct: 439 PAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPA 498
Query: 496 PSVPAEPTPTASPVQTSQP 514
A+ ++ P
Sbjct: 499 APAAPAGADDAATLRERWP 517
Score = 58.5 bits (142), Expect = 6e-09
Identities = 31/144 (21%), Positives = 40/144 (27%), Gaps = 4/144 (2%)
Query: 375 TEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVA 434
+ P + E PA P A + P E +AA
Sbjct: 590 PAPGAAGGEGPPAPASSGPPEEAAR---PAAPAAPAAPAAPAPAGAAAAPAEASAAPAPG 646
Query: 435 APVPSPT-TPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPV 493
P V P AS + A P PA P+ APAP
Sbjct: 647 VAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPA 706
Query: 494 ETPSVPAEPTPTASPVQTSQPCAS 517
TP P A P Q +Q ++
Sbjct: 707 ATPPAGQADDPAAQPPQAAQGASA 730
Score = 57.3 bits (139), Expect = 1e-08
Identities = 33/150 (22%), Positives = 43/150 (28%), Gaps = 3/150 (2%)
Query: 363 PAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVS 422
P E SS P +PAA P + PAP
Sbjct: 588 VGPAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGV 647
Query: 423 TPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPE 482
E VP + + A APAAP P +AP A AP
Sbjct: 648 AAPEHHPK---HVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPA 704
Query: 483 PVPSPAAPAPVETPSVPAEPTPTASPVQTS 512
P +P A + + P + AS +
Sbjct: 705 PAATPPAGQADDPAAQPPQAAQGASAPSPA 734
Score = 56.1 bits (136), Expect = 3e-08
Identities = 34/120 (28%), Positives = 46/120 (38%), Gaps = 3/120 (2%)
Query: 359 PSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTP 418
+ P AA + + + ++P PAA+ +P P +P PAP+ P A
Sbjct: 396 AAAPSAAAAAPAAAPAPA--AAAPAAAAAPAPAAAPQPAP-APAPAPAPPSPAGNAPAGG 452
Query: 419 APVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETP 478
AP P +A P AP +P A APAA P P A A A T
Sbjct: 453 APSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGADDAATL 512
Score = 55.0 bits (133), Expect = 7e-08
Identities = 32/154 (20%), Positives = 43/154 (27%), Gaps = 3/154 (1%)
Query: 359 PSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTP 418
PPA S E+ + P P A P AP+ A
Sbjct: 597 GEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKH 656
Query: 419 APVSTPTETAAASPVAAPVPSPTTPVESPAASTPV---EAPAAPVDTPVTPVASAPPTPA 475
V ++ P A +P P +PA + P A A A
Sbjct: 657 VAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADD 716
Query: 476 ETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPV 509
P+ +AP+P VP P P P
Sbjct: 717 PAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPD 750
Score = 52.3 bits (126), Expect = 5e-07
Identities = 31/145 (21%), Positives = 45/145 (31%), Gaps = 4/145 (2%)
Query: 358 EPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETT 417
+ S P++ + +P PA + P +TPP +
Sbjct: 661 DASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPA--PAATPPAGQADDPA 718
Query: 418 PAPVSTPTETAAASPVAAP-VPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAE 476
P +A SP A VP P P + P + P P P A A P
Sbjct: 719 AQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPP-PAPAPAAAPAAAPPPS 777
Query: 477 TPGAPEPVPSPAAPAPVETPSVPAE 501
P E + AP+ + AE
Sbjct: 778 PPSEEEEMAEDDAPSMDDEDRRDAE 802
Score = 50.8 bits (122), Expect = 1e-06
Identities = 22/103 (21%), Positives = 35/103 (33%), Gaps = 5/103 (4%)
Query: 419 APVSTPTETAAASPVAAP----VPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTP 474
P ++ E + + + + AA + A A P +A P
Sbjct: 364 LPSASDDERGLLARLERLERRLGVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAP 423
Query: 475 AETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQTSQPCAS 517
A AP+P P+PA +P+ A SP + P A
Sbjct: 424 AP-AAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQ 465
Score = 48.1 bits (115), Expect = 1e-05
Identities = 35/128 (27%), Positives = 40/128 (31%), Gaps = 3/128 (2%)
Query: 387 EVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVES 446
V PA P PA S PP PA + P A A AAP + P
Sbjct: 587 VVGPAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPG 646
Query: 447 PAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTA 506
AA A D P AP P +PA AP P+ A P
Sbjct: 647 VAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPP--APAPAAPA-APAGAAPAQPAP 703
Query: 507 SPVQTSQP 514
+P T
Sbjct: 704 APAATPPA 711
Score = 44.6 bits (106), Expect = 1e-04
Identities = 30/108 (27%), Positives = 38/108 (35%), Gaps = 4/108 (3%)
Query: 358 EPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTET- 416
+ PAA + P P PA APS PP A P+
Sbjct: 407 AAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQP 466
Query: 417 TPAPVSTPTETAAASPVAAPVPSPTTPVESP-AASTPVEAPAAPVDTP 463
PAP + P TAA +P P+P +P A + P A A T
Sbjct: 467 APAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAP--AGADDAATL 512
Score = 39.2 bits (92), Expect = 0.005
Identities = 19/97 (19%), Positives = 24/97 (24%), Gaps = 3/97 (3%)
Query: 425 TETAAASPVAAPVPSPTTPVES---PAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAP 481
AA P P+ + P E PAA APAAP + A
Sbjct: 590 PAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAA 649
Query: 482 EPVPSPAAPAPVETPSVPAEPTPTASPVQTSQPCAST 518
P + P + P A
Sbjct: 650 PEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPA 686
Score = 33.0 bits (76), Expect = 0.40
Identities = 16/72 (22%), Positives = 23/72 (31%), Gaps = 2/72 (2%)
Query: 447 PAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTA 506
P+AS A ++ + A A AP + AAPA P+ A A
Sbjct: 365 PSASDDERGLLARLERLERRLGVAGGAGAPAAAAPSA--AAAAPAAAPAPAAAAPAAAAA 422
Query: 507 SPVQTSQPCAST 518
+ A
Sbjct: 423 PAPAAAPQPAPA 434
Score = 31.9 bits (73), Expect = 0.89
Identities = 21/122 (17%), Positives = 26/122 (21%), Gaps = 23/122 (18%)
Query: 359 PSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTP 418
P+ P A + P P + P P + P P P P
Sbjct: 705 PAATPPAGQAD-----------DPAAQPPQAAQGASAPSPAADDPVPLPP--------EP 745
Query: 419 APVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETP 478
P A P P +P S P E D S
Sbjct: 746 DDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEEEEMAED----DAPSMDDEDRRDA 801
Query: 479 GA 480
Sbjct: 802 EE 803
Score = 31.5 bits (72), Expect = 1.2
Identities = 14/93 (15%), Positives = 22/93 (23%)
Query: 358 EPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETT 417
+ PAA+P Q ++ ++ VP +P P P A
Sbjct: 712 GQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPA 771
Query: 418 PAPVSTPTETAAASPVAAPVPSPTTPVESPAAS 450
AP +P
Sbjct: 772 AAPPPSPPSEEEEMAEDDAPSMDDEDRRDAEEV 804
>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau;
Validated.
Length = 647
Score = 65.3 bits (160), Expect = 4e-11
Identities = 24/137 (17%), Positives = 34/137 (24%), Gaps = 6/137 (4%)
Query: 380 SSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAA---- 435
PP +A P + V P P V P + P S + A
Sbjct: 369 EVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQ 428
Query: 436 --PVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPV 493
T +S A+ P + V AP + P E A
Sbjct: 429 LQRAQGATKAKKSEPAAASRARPVNSALERLASVRPAPSALEKAPAKKEAYRWKATNPVE 488
Query: 494 ETPSVPAEPTPTASPVQ 510
A P ++
Sbjct: 489 VKKEPVATPKALKKALE 505
Score = 64.5 bits (158), Expect = 6e-11
Identities = 29/118 (24%), Positives = 44/118 (37%), Gaps = 9/118 (7%)
Query: 398 PVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPA 457
P +P+P P PP + + A A+P AA P V P AS P +APA
Sbjct: 361 PAAPLPEPEVPPQSAA--------PAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPA 412
Query: 458 APVDTPVTPVASAPPTPAETPGA-PEPVPSPAAPAPVETPSVPAEPTPTASPVQTSQP 514
P+ + + +A GA PAA + + E + P ++
Sbjct: 413 VPLPETTSQLLAARQQLQRAQGATKAKKSEPAAASRARPVNSALERLASVRPAPSALE 470
Score = 63.3 bits (155), Expect = 1e-10
Identities = 24/155 (15%), Positives = 43/155 (27%), Gaps = 7/155 (4%)
Query: 358 EPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPV---SPVPAPSTPPVA--- 411
EP PP + ++++T ++ P + +T +
Sbjct: 367 EPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAAR 426
Query: 412 TPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAP 471
+ AA+ A PV S + S + P AP +
Sbjct: 427 QQLQRAQGATKAKKSEPAAASRARPVNSALERLASVRPA-PSALEKAPAKKEAYRWKATN 485
Query: 472 PTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTA 506
P + P A +TP + A+ A
Sbjct: 486 PVEVKKEPVATPKALKKALEHEKTPELAAKLAAEA 520
Score = 59.5 bits (145), Expect = 3e-09
Identities = 28/134 (20%), Positives = 39/134 (29%), Gaps = 7/134 (5%)
Query: 390 PAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAA 449
P V P +P + T P + P A+A A VP P T + AA
Sbjct: 366 PEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAA 425
Query: 450 STPVEAPAAPVDTPVT-PVASAPPTPAE------TPGAPEPVPSPAAPAPVETPSVPAEP 502
++ + P A++ P P P APA E A
Sbjct: 426 RQQLQRAQGATKAKKSEPAAASRARPVNSALERLASVRPAPSALEKAPAKKEAYRWKATN 485
Query: 503 TPTASPVQTSQPCA 516
+ P A
Sbjct: 486 PVEVKKEPVATPKA 499
Score = 56.4 bits (137), Expect = 2e-08
Identities = 29/142 (20%), Positives = 40/142 (28%), Gaps = 10/142 (7%)
Query: 354 SQTIEPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATP 413
+ PP A S ++ + P + A
Sbjct: 385 AAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAKKSEPA 444
Query: 414 TETTPAPVSTPTETAAASPVAAPVPSPTTPVESPA----ASTPVEAPAAPVDTPVTPVAS 469
+ PV++ E A+ AP P + A A+ PVE PV TP
Sbjct: 445 AASRARPVNSALERLASVR-PAPSALEKAPAKKEAYRWKATNPVEVKKEPVATP-----K 498
Query: 470 APPTPAETPGAPEPVPSPAAPA 491
A E PE AA A
Sbjct: 499 ALKKALEHEKTPELAAKLAAEA 520
Score = 41.4 bits (98), Expect = 0.001
Identities = 18/62 (29%), Positives = 22/62 (35%), Gaps = 2/62 (3%)
Query: 456 PAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQTSQPC 515
PAAP+ P P SA P + P + A P P PA P +P
Sbjct: 361 PAAPLPEPEVPPQSAAPAASAQA-TAAPTAAVAPPQAPAVPPPPA-SAPQQAPAVPLPET 418
Query: 516 AS 517
S
Sbjct: 419 TS 420
Score = 29.8 bits (68), Expect = 4.6
Identities = 16/85 (18%), Positives = 25/85 (29%), Gaps = 8/85 (9%)
Query: 354 SQTIEPSKPPAAEPSQTTSESTEKKESSPPTVPEVKP--------AASVEPVPVSPVPAP 405
++ EP+ A P + E +P + + A + V PV P
Sbjct: 438 AKKSEPAAASRARPVNSALERLASVRPAPSALEKAPAKKEAYRWKATNPVEVKKEPVATP 497
Query: 406 STPPVATPTETTPAPVSTPTETAAA 430
A E TP + A
Sbjct: 498 KALKKALEHEKTPELAAKLAAEAIE 522
>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 700
Score = 64.9 bits (158), Expect = 5e-11
Identities = 33/147 (22%), Positives = 45/147 (30%), Gaps = 1/147 (0%)
Query: 364 AAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVST 423
A P Q+ + ++ P AA+ +P P+ P A V+
Sbjct: 362 AFRPGQSGGGAGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAA 421
Query: 424 PTETAAASPVAAPVPSPTTPVESPAASTPVEAPAA-PVDTPVTPVASAPPTPAETPGAPE 482
+ +P A + A P APAA P A P A AP
Sbjct: 422 APARRSPAPEALAAARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPA 481
Query: 483 PVPSPAAPAPVETPSVPAEPTPTASPV 509
AAPAP + P E P
Sbjct: 482 RAAPAAAPAPADDDPPPWEELPPEFAS 508
Score = 63.4 bits (154), Expect = 1e-10
Identities = 34/167 (20%), Positives = 52/167 (31%), Gaps = 7/167 (4%)
Query: 359 PSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVS-------PVPAPSTPPVA 411
+ P AA ++ + + ++ +P + + A++ P PA + P A
Sbjct: 407 AAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPAPAPAAAPAAAARPAA 466
Query: 412 TPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAP 471
A + AA + AP P E APA P P VA +
Sbjct: 467 AGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESI 526
Query: 472 PTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQTSQPCAST 518
P PA APA P A P +P +
Sbjct: 527 PDPATADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPPRASASGL 573
Score = 63.4 bits (154), Expect = 2e-10
Identities = 41/160 (25%), Positives = 52/160 (32%), Gaps = 8/160 (5%)
Query: 362 PPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPV 421
P AA P+ + ++ P A + P SP P P
Sbjct: 392 PAAAAPAPAAPPAAP---AAAPAAAAAARAVAAAPARRSPAPEALAAARQASARG-PGGA 447
Query: 422 STPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPG-- 479
P AA+P AA P+ P AA+ A AAP P P PP E P
Sbjct: 448 PAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPA-PADDDPPPWEELPPEF 506
Query: 480 -APEPVPSPAAPAPVETPSVPAEPTPTASPVQTSQPCAST 518
+P P AAPA S+P T + A
Sbjct: 507 ASPAPAQPDAAPAGWVAESIPDPATADPDDAFETLAPAPA 546
Score = 58.7 bits (142), Expect = 4e-09
Identities = 34/127 (26%), Positives = 43/127 (33%), Gaps = 5/127 (3%)
Query: 390 PAASVEPVPVSPVPAPSTPPVATPTETT-PAPVSTPTETAAASPVAAPVPSPTTPVESPA 448
PA + P PA + P A P PA + AAA+ A P+ +P
Sbjct: 374 PATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEAL 433
Query: 449 ASTPVEAPAAPVDTPVTPVASAP-PTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTAS 507
A+ + P P A A P A P A P P AA A A P +
Sbjct: 434 AAARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAA---APARAAPAAAPA 490
Query: 508 PVQTSQP 514
P P
Sbjct: 491 PADDDPP 497
Score = 55.7 bits (134), Expect = 3e-08
Identities = 26/113 (23%), Positives = 34/113 (30%), Gaps = 3/113 (2%)
Query: 400 SPVPAPSTPPVATPTETT--PAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPA 457
+ + PVA P PA + A+P AAP + + A + AP
Sbjct: 372 AGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPE 431
Query: 458 APVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQ 510
A PA P AP P+ AA P A A
Sbjct: 432 ALAAARQASARGPGGAPAPAP-APAAAPAAAARPAAAGPRPVAAAAAAAPARA 483
Score = 55.7 bits (134), Expect = 4e-08
Identities = 30/112 (26%), Positives = 38/112 (33%), Gaps = 1/112 (0%)
Query: 406 STPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVT 465
A PAP + AA +P A P P + AA APA P
Sbjct: 373 GPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEA 432
Query: 466 PVASAPPTPAETPGAPEPVPSPAA-PAPVETPSVPAEPTPTASPVQTSQPCA 516
A+ + GAP P P+PAA PA P+ A+ A
Sbjct: 433 LAAARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAA 484
Score = 51.0 bits (122), Expect = 1e-06
Identities = 26/96 (27%), Positives = 34/96 (35%), Gaps = 5/96 (5%)
Query: 426 ETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVP 485
A+ AAPV P +PAA+ P A A+A A P P P
Sbjct: 371 GAGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAP 430
Query: 486 SPAAPAPVETPSVPA-----EPTPTASPVQTSQPCA 516
A A + P P P A+P ++P A
Sbjct: 431 EALAAARQASARGPGGAPAPAPAPAAAPAAAARPAA 466
Score = 49.9 bits (119), Expect = 2e-06
Identities = 35/116 (30%), Positives = 41/116 (35%), Gaps = 10/116 (8%)
Query: 411 ATPTETTPAPVSTPTETAAASPVAAPVP--SPTTPVESPAASTPVEAPA--------APV 460
A P APV+ P AAA AAP P P P +PAA+ A A AP
Sbjct: 372 AGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPE 431
Query: 461 DTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQTSQPCA 516
ASA AP P +PAA A A+ + P A
Sbjct: 432 ALAAARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAA 487
Score = 49.9 bits (119), Expect = 2e-06
Identities = 29/150 (19%), Positives = 38/150 (25%), Gaps = 8/150 (5%)
Query: 362 PPAAEPSQTTSESTEKKESSPPTVP---EVKPAASVEPVPVSPVPAPSTPPVATPTETTP 418
A + S +P P AA PV + AP A P
Sbjct: 434 AAARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAP--ARAAPAAAPAP 491
Query: 419 APVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETP 478
A P A+P P+ + + + PA + P A P
Sbjct: 492 ADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIPDPATADPDDAFETLAPAPAAAPAP 551
Query: 479 GAPEPVPSPAAPAPVETPSVPAEPTPTASP 508
A AP P P A P
Sbjct: 552 RAAAATEPVVAPRP---PRASASGLPDMFD 578
Score = 49.5 bits (118), Expect = 4e-06
Identities = 29/134 (21%), Positives = 36/134 (26%), Gaps = 4/134 (2%)
Query: 358 EPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETT 417
P+ PA + + P A P PP
Sbjct: 447 APAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEF 506
Query: 418 PAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAET 477
+P + A A VA +P P T A T APAA P A+A P
Sbjct: 507 ASPAPAQPDAAPAGWVAESIPDPATADPDDAFETLAPAPAA----APAPRAAAATEPVVA 562
Query: 478 PGAPEPVPSPAAPA 491
P P S
Sbjct: 563 PRPPRASASGLPDM 576
Score = 33.7 bits (77), Expect = 0.24
Identities = 28/123 (22%), Positives = 36/123 (29%), Gaps = 15/123 (12%)
Query: 359 PSKPPAAEPSQTTSESTEKKESSPPTVP--EVKPAASVEPVPVSPVPAPSTPPVATPTET 416
AA + + + P E P P P P AP+ + +
Sbjct: 470 RPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIPDP 529
Query: 417 TPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAE 476
A ET A +P A P+P A PV P P ASA P
Sbjct: 530 ATADPDDAFETLAPAP--AAAPAP-----------RAAAATEPVVAPRPPRASASGLPDM 576
Query: 477 TPG 479
G
Sbjct: 577 FDG 579
Score = 32.5 bits (74), Expect = 0.60
Identities = 14/61 (22%), Positives = 19/61 (31%)
Query: 457 AAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQTSQPCA 516
A P PVA P A A +P A + A A+P + S
Sbjct: 372 AGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPE 431
Query: 517 S 517
+
Sbjct: 432 A 432
>gnl|CDD|133037 cd04194, GT8_A4GalT_like, A4GalT_like proteins catalyze the
addition of galactose or glucose residues to the
lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of
the bacterial cell surface. The members of this family
of glycosyltransferases catalyze the addition of
galactose or glucose residues to the lipooligosaccharide
(LOS) or lipopolysaccharide (LPS) of the bacterial cell
surface. The enzymes exhibit broad substrate
specificities. The known functions found in this family
include: Alpha-1,4-galactosyltransferase,
LOS-alpha-1,3-D-galactosyltransferase,
UDP-glucose:(galactosyl) LPS
alpha1,2-glucosyltransferase, UDP-galactose: (glucosyl)
LPS alpha1,2-galactosyltransferase, and
UDP-glucose:(glucosyl) LPS alpha1,2-glucosyltransferase.
Alpha-1,4-galactosyltransferase from N. meningitidis
adds an alpha-galactose from UDP-Gal (the donor) to a
terminal lactose (the acceptor) of the LOS structure of
outer membrane. LOSs are virulence factors that enable
the organism to evade the immune system of host cells.
In E. coli, the three alpha-1,2-glycosyltransferases,
that are involved in the synthesis of the outer core
region of the LPS, are all members of this family. The
three enzymes share 40 % of sequence identity, but have
different sugar donor or acceptor specificities,
representing the structural diversity of LPS.
Length = 248
Score = 59.9 bits (146), Expect = 4e-10
Identities = 41/167 (24%), Positives = 62/167 (37%), Gaps = 48/167 (28%)
Query: 12 LATNDSYALGALVVANSLKRVNTVHDLAI-LITPGVTLAMK---NELLKVFN------FV 61
A +D+YA V S+ N+ D ++ ++ K ELLK +N +
Sbjct: 5 FAIDDNYAPYLAVTIKSILANNSKRDYDFYILNDDISEENKKKLKELLKKYNSSIEFIKI 64
Query: 62 KEVDVFDSRDETN-------LRLLSRPDLGITFTKIHAWRLTQYSKCVFLDADVLIVQNC 114
D T+ RLL PDL L Y K ++LDAD++++ +
Sbjct: 65 DNDDFKFFPATTDHISYATYYRLLI-PDL-----------LPDYDKVLYLDADIIVLGDL 112
Query: 115 DELFDRE----ELSAAPDAGWPDC---------------FNSGVFVF 142
ELFD + L+A D FNSGV +
Sbjct: 113 SELFDIDLGDNLLAAVRDPFIEQEKKRKRRLGGYDDGSYFNSGVLLI 159
>gnl|CDD|227884 COG5597, COG5597, Alpha-N-acetylglucosamine transferase [Cell
envelope biogenesis, outer membrane].
Length = 368
Score = 60.3 bits (146), Expect = 8e-10
Identities = 50/169 (29%), Positives = 74/169 (43%), Gaps = 24/169 (14%)
Query: 7 TAWVTLATNDSYALGALVVANSLKRVNTVHDLAILITPGVTLAMKNELLKVF-------- 58
A VTL TN YALG + T + +L T G T A E+L +
Sbjct: 60 HALVTLVTNGDYALGNRATLRDIYLNRTRALVVVLKTGGETKAKLVEVLTMKGCDLWKTD 119
Query: 59 ---------NFVKEVDVFDSRDETNLRLLSRPDLGITFTKIHAWRLTQYSKCVFLDADVL 109
V+ ++V + T FTK+ + T+Y + +FLD+D +
Sbjct: 120 LLPLDGAFNARVQRINVHEVVPFTKDIKPDFHRWLDMFTKLRVFEQTEYDRVIFLDSDAI 179
Query: 110 IVQNCDELFD--REELSAAPDA-GWPDCF---NSGVFV-FKPSESTYNA 151
+++N D+LFD E +AAPD P F NSG+FV F P+ + Y
Sbjct: 180 VLKNMDKLFDYPVYEFAAAPDVYESPADFHRPNSGIFVSFTPAFAAYGK 228
>gnl|CDD|234818 PRK00708, PRK00708, sec-independent translocase; Provisional.
Length = 209
Score = 56.7 bits (137), Expect = 3e-09
Identities = 32/110 (29%), Positives = 39/110 (35%), Gaps = 8/110 (7%)
Query: 406 STPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPV----EAPAAPVD 461
+T TE PA V+TP E VP P AA+ +APA P
Sbjct: 99 ATSMSEPATENKPAEVTTPVEPMGLPETPPAVPVPAPAPAVAAAAAQAAAAPKAPAKPRA 158
Query: 462 TPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQT 511
P A A P P ET A + + AAP P TP +
Sbjct: 159 KSPRPAAKAAPKPTETITAKKAKKTAAAPKPTA----DKTATPAKKTTKK 204
Score = 48.3 bits (115), Expect = 2e-06
Identities = 24/110 (21%), Positives = 35/110 (31%), Gaps = 7/110 (6%)
Query: 369 QTTSESTEKKESSPP--TVPEVKPAASVEPVPVSPVPAPSTPPVAT--PTETTPAPVSTP 424
Q + +E + P V+P E P PVPAP+ A P + P
Sbjct: 97 QKATSMSEPATENKPAEVTTPVEPMGLPETPPAVPVPAPAPAVAAAAAQAAAAPKAPAKP 156
Query: 425 TETAA-ASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPT 473
+ + AAP P+ T + + P A TP
Sbjct: 157 RAKSPRPAAKAAPKPTETITAKKAKKTAAAPKPTAD--KTATPAKKTTKK 204
Score = 40.6 bits (95), Expect = 9e-04
Identities = 24/97 (24%), Positives = 34/97 (35%), Gaps = 6/97 (6%)
Query: 422 STPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAP 481
++ +E A + A TTPV P PA PV P VA+A A P AP
Sbjct: 100 TSMSEPATENKPAEV----TTPV--EPMGLPETPPAVPVPAPAPAVAAAAAQAAAAPKAP 153
Query: 482 EPVPSPAAPAPVETPSVPAEPTPTASPVQTSQPCAST 518
+ + + P E +T+ T
Sbjct: 154 AKPRAKSPRPAAKAAPKPTETITAKKAKKTAAAPKPT 190
Score = 34.8 bits (80), Expect = 0.058
Identities = 17/79 (21%), Positives = 20/79 (25%), Gaps = 6/79 (7%)
Query: 441 TTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVET-PSVP 499
T + PA PV P TP P AA A P P
Sbjct: 99 ATSMSEPATENKPAEVTTPV-----EPMGLPETPPAVPVPAPAPAVAAAAAQAAAAPKAP 153
Query: 500 AEPTPTASPVQTSQPCAST 518
A+P + T
Sbjct: 154 AKPRAKSPRPAAKAAPKPT 172
Score = 31.3 bits (71), Expect = 0.95
Identities = 15/76 (19%), Positives = 21/76 (27%), Gaps = 3/76 (3%)
Query: 358 EPSKPPAAEPS-QTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTET 416
P PA + + K + P +PAA P P + A T
Sbjct: 130 VPVPAPAPAVAAAAAQAAAAPKAPAKPRAKSPRPAAKAAPKPTETITAKK--AKKTAAAP 187
Query: 417 TPAPVSTPTETAAASP 432
P T T +
Sbjct: 188 KPTADKTATPAKKTTK 203
>gnl|CDD|215090 PLN00176, PLN00176, galactinol synthase.
Length = 333
Score = 57.8 bits (140), Expect = 4e-09
Identities = 50/187 (26%), Positives = 81/187 (43%), Gaps = 47/187 (25%)
Query: 8 AWVT-LATNDSYALGALVVANSLKRVNTVHDLAILITPGVTLAMKNELLKVFNFVKEVD- 65
A+VT LA N Y G + +A L++V + + L + + P V + L+ V+E++
Sbjct: 24 AYVTFLAGNGDYVKGVVGLAKGLRKVKSAYPLVVAVLPDVPEEHRRILVSQGCIVREIEP 83
Query: 66 VFDSRDETNLRLLSRPDLGITFTKIHAWRLTQYSKCVFLDADVLIVQNCDELFDRE---- 121
V+ ++T + I ++K+ W +YSK ++LD D+ + +N D LFD
Sbjct: 84 VYPPENQTQF---AMAYYVINYSKLRIWEFVEYSKMIYLDGDIQVFENIDHLFDLPDGYF 140
Query: 122 ----------------------------------ELSAAPDAGWPDCFNSGVFVFKPSES 147
EL P P FN+G+FVF+PS S
Sbjct: 141 YAVMDCFCEKTWSHTPQYKIGYCQQCPDKVTWPAELGPPP----PLYFNAGMFVFEPSLS 196
Query: 148 TYNALVE 154
TY L+E
Sbjct: 197 TYEDLLE 203
>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 585
Score = 58.3 bits (141), Expect = 5e-09
Identities = 28/99 (28%), Positives = 32/99 (32%), Gaps = 12/99 (12%)
Query: 382 PPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPA----PVSTPTETAAASPVAAPV 437
P P+ + P PV P PAPST P A P + PVA PV
Sbjct: 362 PVPAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAPPV 421
Query: 438 PSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAE 476
P ES T P P + P P E
Sbjct: 422 P---HTPESAPKLTRAAIPV-----DEKPKYTPPAPPKE 452
Score = 57.5 bits (139), Expect = 9e-09
Identities = 32/105 (30%), Positives = 37/105 (35%), Gaps = 4/105 (3%)
Query: 392 ASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAAS-PVAAPVPSPTTPVESPA-- 448
A + PVP P PA T +P TPAP + P AAA+ P PV TP P
Sbjct: 358 ALLVPVPA-PQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRP 416
Query: 449 ASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPV 493
+ PV P TP AP A A
Sbjct: 417 VAPPVPHTPESAPKLTRAAIPVDEKPKYTPPAPPKEEEKALIADG 461
Score = 53.3 bits (128), Expect = 2e-07
Identities = 30/93 (32%), Positives = 36/93 (38%), Gaps = 3/93 (3%)
Query: 422 STPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVA-SAPPTP--AETP 478
P E A + PVP+P + AA +PV AP P A + PP ET
Sbjct: 348 QLPLELAVIEALLVPVPAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETA 407
Query: 479 GAPEPVPSPAAPAPVETPSVPAEPTPTASPVQT 511
P P P AP TP + T A PV
Sbjct: 408 TPPPVPPRPVAPPVPHTPESAPKLTRAAIPVDE 440
Score = 52.5 bits (126), Expect = 3e-07
Identities = 24/96 (25%), Positives = 31/96 (32%), Gaps = 6/96 (6%)
Query: 361 KPPAAEPSQTTSESTEKKE-----SSPPTVPEVKPAASVEPVPVSPVPAPSTP-PVATPT 414
PA +P++ T+ + S+ P EPV + P P P PVA P
Sbjct: 362 PVPAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAPPV 421
Query: 415 ETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAAS 450
TP T A P P E A
Sbjct: 422 PHTPESAPKLTRAAIPVDEKPKYTPPAPPKEEEKAL 457
Score = 49.8 bits (119), Expect = 2e-06
Identities = 22/92 (23%), Positives = 28/92 (30%), Gaps = 1/92 (1%)
Query: 417 TPAPVSTP-TETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPA 475
P P P TAAA P P+P+T ++ AA+ PV P P
Sbjct: 361 VPVPAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAPP 420
Query: 476 ETPGAPEPVPSPAAPAPVETPSVPAEPTPTAS 507
A PV+ P P
Sbjct: 421 VPHTPESAPKLTRAAIPVDEKPKYTPPAPPKE 452
Score = 44.0 bits (104), Expect = 2e-04
Identities = 21/78 (26%), Positives = 28/78 (35%), Gaps = 5/78 (6%)
Query: 356 TIEPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTE 415
T PS P A + +E++ P +P A PVP +P AP A P +
Sbjct: 382 TPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAP--PVPHTPESAPKLTRAAIPVD 439
Query: 416 TTP---APVSTPTETAAA 430
P P E A
Sbjct: 440 EKPKYTPPAPPKEEEKAL 457
Score = 37.9 bits (88), Expect = 0.013
Identities = 15/65 (23%), Positives = 18/65 (27%), Gaps = 1/65 (1%)
Query: 453 VEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQTS 512
+EA PV P P+ P P P A A P P
Sbjct: 356 IEALLVPV-PAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPP 414
Query: 513 QPCAS 517
+P A
Sbjct: 415 RPVAP 419
>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed.
Length = 1228
Score = 58.7 bits (143), Expect = 5e-09
Identities = 25/82 (30%), Positives = 32/82 (39%)
Query: 418 PAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAET 477
P + PT AAA+ AA P+ ++PAA P AA P P A+A A
Sbjct: 38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPA 97
Query: 478 PGAPEPVPSPAAPAPVETPSVP 499
+ A A VE P
Sbjct: 98 APPAAAAAAAPAAAAVEDEVTP 119
Score = 55.7 bits (135), Expect = 4e-08
Identities = 26/88 (29%), Positives = 28/88 (31%), Gaps = 2/88 (2%)
Query: 404 APSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTP 463
ST A S P AA AAP P+P A P A AA
Sbjct: 38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPA 97
Query: 464 VTPVASAPPTPAETPGAPEPVP--SPAA 489
P A+A PA E P AA
Sbjct: 98 APPAAAAAAAPAAAAVEDEVTPLRGAAA 125
Score = 54.5 bits (132), Expect = 1e-07
Identities = 25/82 (30%), Positives = 31/82 (37%), Gaps = 1/82 (1%)
Query: 415 ETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTP 474
+T AP + AAA+ A P+ P A APAAP P A+A
Sbjct: 39 GSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPP-KPAAAAAAAAAPA 97
Query: 475 AETPGAPEPVPSPAAPAPVETP 496
A A P+ AA TP
Sbjct: 98 APPAAAAAAAPAAAAVEDEVTP 119
Score = 53.7 bits (130), Expect = 2e-07
Identities = 22/88 (25%), Positives = 31/88 (35%), Gaps = 3/88 (3%)
Query: 392 ASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPS-PTTPVESPAAS 450
A P + A + A + AP + A +P AA P+ P P + AA+
Sbjct: 34 ADYGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAA 93
Query: 451 TPVEAPAAPVDTPVTPVASAPPTPAETP 478
AP A A+A TP
Sbjct: 94 AAPAAPPAA--AAAAAPAAAAVEDEVTP 119
Score = 53.4 bits (129), Expect = 2e-07
Identities = 19/79 (24%), Positives = 26/79 (32%), Gaps = 1/79 (1%)
Query: 430 ASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAA 489
A +PT + AA+ A A P P + P A P+P + AA
Sbjct: 34 ADYGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAA-PPKPAAAAAA 92
Query: 490 PAPVETPSVPAEPTPTASP 508
A P A A+
Sbjct: 93 AAAPAAPPAAAAAAAPAAA 111
Score = 52.6 bits (127), Expect = 4e-07
Identities = 22/87 (25%), Positives = 28/87 (32%), Gaps = 1/87 (1%)
Query: 428 AAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSP 487
A P + P+ + AAS P APAA P A PA P P +
Sbjct: 34 ADYGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPA-APPKPAAAAAA 92
Query: 488 AAPAPVETPSVPAEPTPTASPVQTSQP 514
AA + A A+ P
Sbjct: 93 AAAPAAPPAAAAAAAPAAAAVEDEVTP 119
Score = 52.6 bits (127), Expect = 4e-07
Identities = 16/80 (20%), Positives = 22/80 (27%)
Query: 386 PEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVE 445
P A + + + A PAP AA P A +
Sbjct: 38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPA 97
Query: 446 SPAASTPVEAPAAPVDTPVT 465
+P A+ APAA
Sbjct: 98 APPAAAAAAAPAAAAVEDEV 117
Score = 51.8 bits (125), Expect = 8e-07
Identities = 22/82 (26%), Positives = 29/82 (35%), Gaps = 1/82 (1%)
Query: 437 VPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETP 496
S P + AA+ + A P A AP PA A P P+ AA A P
Sbjct: 38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAA-AAP 96
Query: 497 SVPAEPTPTASPVQTSQPCAST 518
+ P A+P + T
Sbjct: 97 AAPPAAAAAAAPAAAAVEDEVT 118
Score = 49.9 bits (120), Expect = 2e-06
Identities = 25/109 (22%), Positives = 38/109 (34%), Gaps = 3/109 (2%)
Query: 343 KDSWDNIWKKISQTIEPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPV 402
+S D W++ P A + + + ++ P A P +P
Sbjct: 22 PNSVDPSWREFFADYGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPA 81
Query: 403 PAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAAST 451
P A AP + P AAA+P AA V TP+ AA+
Sbjct: 82 APPKPAAAAAAA---AAPAAPPAAAAAAAPAAAAVEDEVTPLRGAAAAV 127
Score = 49.1 bits (118), Expect = 6e-06
Identities = 23/93 (24%), Positives = 33/93 (35%), Gaps = 1/93 (1%)
Query: 378 KESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPV 437
T AA+ +P AP+ A P PA + P + AA
Sbjct: 35 DYGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAA-AAPAAPPKPAAAAAAA 93
Query: 438 PSPTTPVESPAASTPVEAPAAPVDTPVTPVASA 470
+P P + AA+ P A TP+ A+A
Sbjct: 94 AAPAAPPAAAAAAAPAAAAVEDEVTPLRGAAAA 126
Score = 38.7 bits (91), Expect = 0.008
Identities = 26/108 (24%), Positives = 36/108 (33%), Gaps = 5/108 (4%)
Query: 354 SQTIEPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPA---PSTPPV 410
+ + AA S + K ++P P A + P P + A P+ PP
Sbjct: 42 AAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPA 101
Query: 411 ATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEA-PA 457
A A T AA + +E P A T V A PA
Sbjct: 102 AAAAAAPAAAAVEDEVTPLRGAAAAVAKNMDASLEVPTA-TSVRAVPA 148
>gnl|CDD|236776 PRK10856, PRK10856, cytoskeletal protein RodZ; Provisional.
Length = 331
Score = 56.2 bits (136), Expect = 1e-08
Identities = 26/104 (25%), Positives = 40/104 (38%)
Query: 368 SQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTET 427
Q+++E ++ S P + P P +PV T T PAP P +
Sbjct: 148 DQSSAELSQNSGQSVPLDTSTTTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQN 207
Query: 428 AAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAP 471
A +P A V + TP + A+ AP V+ A+ P
Sbjct: 208 AVVAPSQANVDTAATPAPAAPATPDGAAPLPTDQAGVSTPAADP 251
Score = 51.2 bits (123), Expect = 6e-07
Identities = 23/89 (25%), Positives = 32/89 (35%)
Query: 401 PVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPV 460
VP ++ T PA T T + +P A P+P + A P +A
Sbjct: 161 SVPLDTSTTTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQANVDTA 220
Query: 461 DTPVTPVASAPPTPAETPGAPEPVPSPAA 489
TP + P A P V +PAA
Sbjct: 221 ATPAPAAPATPDGAAPLPTDQAGVSTPAA 249
Score = 50.8 bits (122), Expect = 8e-07
Identities = 19/95 (20%), Positives = 27/95 (28%), Gaps = 1/95 (1%)
Query: 395 EPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVE 454
+ VP+ P T ++T A + AP P + V+
Sbjct: 160 QSVPLDTSTTTDPATTPAPA-APVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQANVD 218
Query: 455 APAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAA 489
A P A P P + G P P A
Sbjct: 219 TAATPAPAAPATPDGAAPLPTDQAGVSTPAADPNA 253
Score = 49.6 bits (119), Expect = 2e-06
Identities = 29/96 (30%), Positives = 34/96 (35%), Gaps = 7/96 (7%)
Query: 403 PAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDT 462
P T TTPAP + T S V + P P + V A VDT
Sbjct: 161 SVPLDTSTTTDPATTPAPAAPVDTTPTNSQ-TPAVATAPAPAVDPQQNAVVAPSQANVDT 219
Query: 463 PVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSV 498
TP +AP TP P P A V TP+
Sbjct: 220 AATPAPAAPATPDGAA------PLPTDQAGVSTPAA 249
Score = 45.4 bits (108), Expect = 4e-05
Identities = 26/100 (26%), Positives = 34/100 (34%), Gaps = 6/100 (6%)
Query: 364 AAEPSQTTSES---TEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTP--PVATPTETTP 418
+AE SQ + +S + P T P P S PA +T P P +
Sbjct: 151 SAELSQNSGQSVPLDTSTTTDPATTPAPAAPVDTTPTN-SQTPAVATAPAPAVDPQQNAV 209
Query: 419 APVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAA 458
S AA+P A +P P V PAA
Sbjct: 210 VAPSQANVDTAATPAPAAPATPDGAAPLPTDQAGVSTPAA 249
Score = 45.0 bits (107), Expect = 5e-05
Identities = 23/95 (24%), Positives = 31/95 (32%), Gaps = 1/95 (1%)
Query: 413 PTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPP 472
P+ T T T A+ A P TTP S + APA VD V +
Sbjct: 156 QNSGQSVPLDTSTTTDPATTPAPAAPVDTTPTNSQTPAVAT-APAPAVDPQQNAVVAPSQ 214
Query: 473 TPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTAS 507
+T P P P+ A + A+
Sbjct: 215 ANVDTAATPAPAAPATPDGAAPLPTDQAGVSTPAA 249
Score = 44.6 bits (106), Expect = 6e-05
Identities = 25/97 (25%), Positives = 37/97 (38%), Gaps = 3/97 (3%)
Query: 365 AEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPP-VATPTETTPAPVST 423
+ P T++ + +P + P S P V+ PAP+ P + A V T
Sbjct: 161 SVPLDTSTTTDPATTPAPAAPVDTTPTNSQTP-AVATAPAPAVDPQQNAVVAPSQANVDT 219
Query: 424 PTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPV 460
T A + A P + P + STP P A V
Sbjct: 220 AA-TPAPAAPATPDGAAPLPTDQAGVSTPAADPNALV 255
Score = 40.4 bits (95), Expect = 0.001
Identities = 20/75 (26%), Positives = 25/75 (33%), Gaps = 2/75 (2%)
Query: 445 ESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAP--APVETPSVPAEP 502
+ APAAPVDT T + A P + AP A V+T + PA
Sbjct: 167 STTTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQANVDTAATPAPA 226
Query: 503 TPTASPVQTSQPCAS 517
P P
Sbjct: 227 APATPDGAAPLPTDQ 241
Score = 40.4 bits (95), Expect = 0.002
Identities = 22/97 (22%), Positives = 35/97 (36%), Gaps = 6/97 (6%)
Query: 422 STPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAP 481
S P +T+ + A P+P PV++ ++ A A V P +A P++
Sbjct: 161 SVPLDTSTTTD-PATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQAN--- 216
Query: 482 EPVPSPAAPAPVETPSVPAEPTPTASPVQTSQPCAST 518
V + A PAP + S P A
Sbjct: 217 --VDTAATPAPAAPATPDGAAPLPTDQAGVSTPAADP 251
Score = 40.4 bits (95), Expect = 0.002
Identities = 25/91 (27%), Positives = 32/91 (35%), Gaps = 7/91 (7%)
Query: 360 SKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVP-VSPVPAPSTPPVATPTETTP 418
+ PA P+ T + P V A + P + V APS V T P
Sbjct: 169 TTDPATTPAPAAPVDTT---PTNSQTPAVATAPAPAVDPQQNAVVAPSQANVDTAATPAP 225
Query: 419 APVSTPTETAAASPVAAPVPSPTTPVESPAA 449
A +TP A A V +TP P A
Sbjct: 226 AAPATPDGAAPLPTDQAGV---STPAADPNA 253
Score = 35.0 bits (81), Expect = 0.070
Identities = 20/75 (26%), Positives = 30/75 (40%), Gaps = 2/75 (2%)
Query: 445 ESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPA-APAPVETPSVPAEPT 503
+S A + + P+DT T + P PA P P S A A P+V +
Sbjct: 149 QSSAELSQNSGQSVPLDTSTTTDPATTPAPA-APVDTTPTNSQTPAVATAPAPAVDPQQN 207
Query: 504 PTASPVQTSQPCAST 518
+P Q + A+T
Sbjct: 208 AVVAPSQANVDTAAT 222
Score = 33.1 bits (76), Expect = 0.37
Identities = 12/61 (19%), Positives = 22/61 (36%)
Query: 359 PSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTP 418
S+ PA + + ++ P+ V AA+ P + + P +TP
Sbjct: 188 NSQTPAVATAPAPAVDPQQNAVVAPSQANVDTAATPAPAAPATPDGAAPLPTDQAGVSTP 247
Query: 419 A 419
A
Sbjct: 248 A 248
Score = 28.5 bits (64), Expect = 9.3
Identities = 20/86 (23%), Positives = 31/86 (36%), Gaps = 8/86 (9%)
Query: 354 SQTIEPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAA---SVEPVPVSPVPAPSTPPV 410
P+ + + T S++ + P V + A S V + PAP+ P
Sbjct: 171 DPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQANVDTAATPAPAAP-- 228
Query: 411 ATPTETTPAPVSTPTETAAASPVAAP 436
ATP P P ++P A P
Sbjct: 229 ATPDGAAPLPTDQ---AGVSTPAADP 251
>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 614
Score = 56.3 bits (136), Expect = 3e-08
Identities = 31/145 (21%), Positives = 36/145 (24%), Gaps = 20/145 (13%)
Query: 361 KPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAP 420
P Q + + P AAS P S PS P AT TP
Sbjct: 369 ASGGRGPKQHIKPVF--TQPAAAPQPSAAAAASPSPSQSSAAAQPSAPQSATQPAGTPPT 426
Query: 421 VSTPTETAAASPVAAPVPSPTT-PVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPG 479
VS P A PV P+T P A E + P
Sbjct: 427 VSVD------PPAAVPVNPPSTAPQAVRPAQFKEEKKIPVSK-----------VSSLGPS 469
Query: 480 APEPVPSPAAPAPVETPSVPAEPTP 504
P+ A A P
Sbjct: 470 TLRPIQEKAEQATGNIKEAPTGTQK 494
Score = 47.5 bits (113), Expect = 1e-05
Identities = 21/83 (25%), Positives = 26/83 (31%), Gaps = 1/83 (1%)
Query: 424 PTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEP 483
+ P AAP P SP+ S A T A PPT + P A P
Sbjct: 378 HIKPVFTQPAAAPQP-SAAAAASPSPSQSSAAAQPSAPQSATQPAGTPPTVSVDPPAAVP 436
Query: 484 VPSPAAPAPVETPSVPAEPTPTA 506
V P+ P+ E
Sbjct: 437 VNPPSTAPQAVRPAQFKEEKKIP 459
Score = 44.0 bits (104), Expect = 2e-04
Identities = 25/115 (21%), Positives = 40/115 (34%), Gaps = 10/115 (8%)
Query: 353 ISQTIEPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVS-----PVPAPST 407
+Q +P AA + ++ ++ P+ P+ + P VS VP
Sbjct: 383 FTQPAAAPQPSAAA--AASPSPSQSSAAAQPSAPQSATQPAGTPPTVSVDPPAAVPVN-- 438
Query: 408 PPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDT 462
PP P PA + S V++ PS P++ A AP T
Sbjct: 439 PPSTAPQAVRPAQFK-EEKKIPVSKVSSLGPSTLRPIQEKAEQATGNIKEAPTGT 492
Score = 33.2 bits (76), Expect = 0.33
Identities = 12/61 (19%), Positives = 17/61 (27%), Gaps = 4/61 (6%)
Query: 456 PAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQTSQPC 515
PAA AS P+ + PS A + P + V + P
Sbjct: 386 PAAAPQPSAAAAASPSPSQSSAA----AQPSAPQSATQPAGTPPTVSVDPPAAVPVNPPS 441
Query: 516 A 516
Sbjct: 442 T 442
>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional.
Length = 1352
Score = 55.9 bits (135), Expect = 4e-08
Identities = 36/160 (22%), Positives = 55/160 (34%), Gaps = 5/160 (3%)
Query: 359 PSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTP 418
+PP P +E+ + S PT A + SP P + P P T P
Sbjct: 64 RFEPPTGPPPGPGTEAPANESRSTPTWSLSTLAPASPAREGSPTPPGPSSP-DPPPPTPP 122
Query: 419 APVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTP----VASAPPTP 474
P+ S + PV SP P + + A D + S+P
Sbjct: 123 PASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEET 182
Query: 475 AETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQTSQP 514
A P +P P P+ P +P P +P ++ + P
Sbjct: 183 ARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAP 222
Score = 54.8 bits (132), Expect = 9e-08
Identities = 29/146 (19%), Positives = 42/146 (28%), Gaps = 2/146 (1%)
Query: 358 EPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETT 417
S +T PT P P P P PS P +
Sbjct: 81 ANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPPPPTPPPASPPPSPAPDLSEMLRP 140
Query: 418 PAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPT--PA 475
P + + A+P + S A+ P+ +P P +P A PP+ PA
Sbjct: 141 VGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPSSPPAEPPPSTPPA 200
Query: 476 ETPGAPEPVPSPAAPAPVETPSVPAE 501
P SP + + P
Sbjct: 201 AASPRPPRRSSPISASASSPAPAPGR 226
Score = 47.1 bits (112), Expect = 2e-05
Identities = 23/144 (15%), Positives = 44/144 (30%), Gaps = 3/144 (2%)
Query: 374 STEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPV 433
++ E + TV A P P P P T A + +TP + A+ +
Sbjct: 44 VSDSAELAAVTVVAGAAACDRFEPPTGPPPGPGTEAPANESRSTPTWSLSTLAPASPARE 103
Query: 434 AAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPV---ASAPPTPAETPGAPEPVPSPAAP 490
+P P + + P + P +P ++ + +P P A
Sbjct: 104 GSPTPPGPSSPDPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVA 163
Query: 491 APVETPSVPAEPTPTASPVQTSQP 514
+ + A P + +
Sbjct: 164 SDAASSRQAALPLSSPEETARAPS 187
Score = 46.7 bits (111), Expect = 3e-05
Identities = 30/147 (20%), Positives = 43/147 (29%), Gaps = 7/147 (4%)
Query: 364 AAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVST 423
A + E P T + S +S + S +PT P+
Sbjct: 57 AGAAACDRFEPPTGPPPGPGTEAPANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDP 116
Query: 424 PTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPP--TPAETPGAP 481
P P A+P PSP + P P + A A + A
Sbjct: 117 P---PPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAA 173
Query: 482 EPVPSPAAPAPVETPSVPAEPTPTASP 508
P+ SP PS P P ++P
Sbjct: 174 LPLSSP--EETARAPSSPPAEPPPSTP 198
Score = 45.2 bits (107), Expect = 9e-05
Identities = 39/175 (22%), Positives = 62/175 (35%), Gaps = 16/175 (9%)
Query: 356 TIEPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPP------ 409
P+ PPA+ P + +E P + + V + +
Sbjct: 116 PPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALP 175
Query: 410 VATPTETTPAPVSTPTE--TAAASPVAAPVPSPTTPVESPAASTPVEAPA--APVDTPVT 465
+++P ET AP S P E + A+P P + S +AS+P AP A D +
Sbjct: 176 LSSPEETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGAS 235
Query: 466 PVASAPPTPAETPGAPE---PVPSPA---APAPVETPSVPAEPTPTASPVQTSQP 514
S+ + PE P+P PA P + S P+ P +S
Sbjct: 236 SSDSSSSESSGCGWGPENECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSS 290
Score = 44.4 bits (105), Expect = 1e-04
Identities = 25/153 (16%), Positives = 41/153 (26%), Gaps = 9/153 (5%)
Query: 362 PPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPV 421
PP + P P++ SP P P+ P A
Sbjct: 108 PPGPSSPDPPPPTPPPASPPPSPAPDLSEMLRPVG---SPGPPPAASPPAAGASPAAVA- 163
Query: 422 STPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAP 481
S + A+ + SP A P P A + + A
Sbjct: 164 SDAASSRQAALPLSSPEETARAPSSPPAEPPPSTPPAA-----ASPRPPRRSSPISASAS 218
Query: 482 EPVPSPAAPAPVETPSVPAEPTPTASPVQTSQP 514
P P+P A + + ++ + + S P
Sbjct: 219 SPAPAPGRSAADDAGASSSDSSSSESSGCGWGP 251
Score = 43.6 bits (103), Expect = 2e-04
Identities = 29/161 (18%), Positives = 50/161 (31%), Gaps = 9/161 (5%)
Query: 360 SKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPA 419
A+ ++SES+ P +PA P + P
Sbjct: 230 DDAGASSSDSSSSESSGCGWGPENECPLPRPAPITLP------TRIWEASGWNGPSSRPG 283
Query: 420 PVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPG 479
P S+ + SP +P + P S ++ + + + T +S A
Sbjct: 284 PASSSSSPRERSPSPSPSSPGSGPAPSSPRASSSSSSSRESSSSSTSSSSESSRGAAVSP 343
Query: 480 APEPVPSPA---APAPVETPSVPAEPTPTASPVQTSQPCAS 517
P P SP+ P P + S P P+ +P +
Sbjct: 344 GPSPSRSPSPSRPPPPADPSSPRKRPRPSRAPSSPAASAGR 384
Score = 42.9 bits (101), Expect = 5e-04
Identities = 37/158 (23%), Positives = 55/158 (34%), Gaps = 7/158 (4%)
Query: 358 EPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATP---T 414
P PPAA P + + + P +S E +P P+ PP +TP
Sbjct: 143 SPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPSSPPAEPPPSTPPAAA 202
Query: 415 ETTPAPVSTPTETAAASPVAAPVPSPTTPVE----SPAASTPVEAPAAPVDTPVTPVASA 470
P S+P +A+SP AP S ++S P + P +
Sbjct: 203 SPRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGCGWGPENECPLPRPAP 262
Query: 471 PPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASP 508
P A + P P + S P E +P+ SP
Sbjct: 263 ITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSP 300
Score = 40.2 bits (94), Expect = 0.003
Identities = 24/124 (19%), Positives = 36/124 (29%), Gaps = 5/124 (4%)
Query: 397 VPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAP 456
+ + VA P P + + + + ST A
Sbjct: 43 LVSDSAELAAVTVVAG---AAACDRFEPPTGPPPGPGTEAPANESRSTPTWSLSTLAPAS 99
Query: 457 AAPV--DTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQTSQP 514
A TP P + PP P P +P P P+P + P P + P + P
Sbjct: 100 PAREGSPTPPGPSSPDPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASP 159
Query: 515 CAST 518
A
Sbjct: 160 AAVA 163
Score = 39.8 bits (93), Expect = 0.004
Identities = 34/181 (18%), Positives = 56/181 (30%), Gaps = 19/181 (10%)
Query: 357 IEPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTET 416
A+ S SSP P A + S+ P
Sbjct: 195 PSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGCGWGPENE 254
Query: 417 TP----APVSTPTETAAASP--VAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTP---- 466
P AP++ PT AS + P P + SP +P +P++P P
Sbjct: 255 CPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRA 314
Query: 467 ---------VASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQTSQPCAS 517
+S+ + + V +P+ +PS P P +SP + +P +
Sbjct: 315 SSSSSSSRESSSSSTSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRA 374
Query: 518 T 518
Sbjct: 375 P 375
Score = 39.4 bits (92), Expect = 0.005
Identities = 27/124 (21%), Positives = 36/124 (29%), Gaps = 5/124 (4%)
Query: 399 VSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAA 458
+ T P TE A + P S +T + A P
Sbjct: 51 AAVTVVAGAAACDRFEPPTGPPPGPGTEAPANESRSTPTWSLSTLAPASPAREGSPTPPG 110
Query: 459 PVDTPVTPVASAPPTPAETPG-----APEPVPSPAAPAPVETPSVPAEPTPTASPVQTSQ 513
P P P +P +P PV SP P P+ A P AS +S+
Sbjct: 111 PSSPDPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSR 170
Query: 514 PCAS 517
A
Sbjct: 171 QAAL 174
Score = 39.0 bits (91), Expect = 0.007
Identities = 31/189 (16%), Positives = 58/189 (30%), Gaps = 15/189 (7%)
Query: 344 DSWDNIWKKISQTIEPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVP 403
+S W ++ P P P++ S SS P P ++ E P
Sbjct: 243 ESSGCGWGPENECPLPRPAPITLPTRIWEASGWNGPSSRPG-PASSSSSPRERSPSPSPS 301
Query: 404 APSTPPVATPT----ETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAP 459
+P + P + ++ + S+ + T+++S + P S + S P A
Sbjct: 302 SPGSGPAPSSPRASSSSSSSRESSSSSTSSSSESSRGAAVSPGPSPSRSPSPSRPPPPAD 361
Query: 460 VDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVE----------TPSVPAEPTPTASPV 509
+P + + A P A A P+ P+P +
Sbjct: 362 PSSPRKRPRPSRAPSSPAASAGRPTRRRARAAVAGRARRRDATGRFPAGRPRPSPLDAGA 421
Query: 510 QTSQPCAST 518
+ A
Sbjct: 422 ASGAFYARY 430
Score = 38.6 bits (90), Expect = 0.008
Identities = 25/128 (19%), Positives = 36/128 (28%), Gaps = 9/128 (7%)
Query: 390 PAASVEPVPVSP------VPAPSTPPVATPT---ETTPAPVSTPTETAAASPVAAPVPSP 440
P A+ + +A T P P +
Sbjct: 24 PPATPGDAADDLLSGSQGQLVSDSAELAAVTVVAGAAACDRFEPPTGPPPGPGTEAPANE 83
Query: 441 TTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPA 500
+ + + ST A A +P P S+P P TP P PSPA V +
Sbjct: 84 SRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPPPPTPPPASPPPSPAPDLSEMLRPVGS 143
Query: 501 EPTPTASP 508
P A+
Sbjct: 144 PGPPPAAS 151
Score = 36.3 bits (84), Expect = 0.049
Identities = 24/160 (15%), Positives = 40/160 (25%), Gaps = 15/160 (9%)
Query: 369 QTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETA 428
+ + + + E + A P + + A T ++
Sbjct: 761 PSLVPAKLAEALALLEPAEPQRGAGSSPPVRAEAAFRRPGRLRRSGPAADAASRTASKRK 820
Query: 429 AASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASA-------------PPTPA 475
+ S + P P A+ + + P A+ PP P
Sbjct: 821 SRSHTPDGGSESSGPARPPGAAARPPPARSSESSKSKPAAAGGRARGKNGRRRPRPPEPR 880
Query: 476 ETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQTSQPC 515
PGA P AA A + P P P
Sbjct: 881 ARPGAAAP--PKAAAAAPPAGAPAPRPRPAPRVKLGPMPP 918
Score = 36.3 bits (84), Expect = 0.052
Identities = 30/154 (19%), Positives = 42/154 (27%), Gaps = 9/154 (5%)
Query: 359 PSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTP 418
P + S SS +S +P P +P+ + P
Sbjct: 297 SPSPSSPGSGPAPSSPRASSSSSSSRESSSSSTSSSSESSRGAAVSPGPSPSRSPSPSRP 356
Query: 419 APVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPV----TPVASAPPTP 474
P + P+ + SP S T A AA T A
Sbjct: 357 PPPADPSSPRKRPRPSRAPSSPAA---SAGRPTRRRARAAVAGRARRRDATGRFPAGRPR 413
Query: 475 AETPGAPEPVPSPAAPAPVETPSVPAEPTPTASP 508
A + A P+ TPS EP P + P
Sbjct: 414 PSPLDAGAASGAFYARYPLLTPS--GEPWPGSPP 445
Score = 32.8 bits (75), Expect = 0.60
Identities = 23/147 (15%), Positives = 32/147 (21%), Gaps = 4/147 (2%)
Query: 350 WKKISQTIEPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPP 409
+ + S P AE + + + S P
Sbjct: 777 PAEPQRGAGSSPPVRAEAAFRRPGRLRRSGPAADAASRTASKRKSRSHTPDGGSESSGPA 836
Query: 410 VATPTETTPAPV---STPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTP 466
P P + AA+ A + P A A P P
Sbjct: 837 RPPGAAARPPPARSSESSKSKPAAAGGRARGKNGRRRPRPPEPRARPGAAAPPKAAAAAP 896
Query: 467 VASAPPTPAETPGAPEPVPSPAA-PAP 492
A AP + P P P P
Sbjct: 897 PAGAPAPRPRPAPRVKLGPMPPGGPDP 923
Score = 32.5 bits (74), Expect = 0.64
Identities = 24/129 (18%), Positives = 41/129 (31%), Gaps = 3/129 (2%)
Query: 360 SKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPST-PPVATPTETTP 418
S ++ S ++S + + + P + + P P + +P P + +
Sbjct: 320 SSRESSSSSTSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRAPSSPA 379
Query: 419 APVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAET- 477
A PT A + VA PA A + TP+
Sbjct: 380 ASAGRPTRRRARAAVAGRARRRDATGRFPAGRPRPSPLDAGAASGAFYARYPLLTPSGEP 439
Query: 478 -PGAPEPVP 485
PG+P P P
Sbjct: 440 WPGSPPPPP 448
>gnl|CDD|218191 pfam04652, DUF605, Vta1 like. Vta1 (VPS20-associated protein 1) is
a positive regulator of Vps4. Vps4 is an ATPase that is
required in the multivesicular body (MVB) sorting
pathway to dissociate the endosomal sorting complex
required for transport (ESCRT). Vta1 promotes correct
assembly of Vps4 and stimulates its ATPase activity
through its conserved Vta1/SBP1/LIP5 region.
Length = 315
Score = 54.3 bits (131), Expect = 5e-08
Identities = 28/139 (20%), Positives = 47/139 (33%), Gaps = 8/139 (5%)
Query: 376 EKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAA 435
E ++ +P + + + S P + P S+P
Sbjct: 144 EGEDPNPGPPLDEEDEDADVATTNSDNSFPGEDADPASASPSDPPSSSPGV--------P 195
Query: 436 PVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVET 495
PSP SP+ S+ AP++ P +P P+ PG P P P P +
Sbjct: 196 SFPSPPEDPSSPSDSSLPPAPSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLS 255
Query: 496 PSVPAEPTPTASPVQTSQP 514
+ P P+ +A+P
Sbjct: 256 TAKPTPPSASATPAPIGGI 274
Score = 50.1 bits (120), Expect = 1e-06
Identities = 27/129 (20%), Positives = 37/129 (28%), Gaps = 1/129 (0%)
Query: 362 PPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPV 421
PP E + +T ++S P +AS P S PS P +
Sbjct: 152 PPLDEEDEDADVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPSSPSDSS 211
Query: 422 STPTETAAASPVAAPVPSPTT-PVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGA 480
P ++ S P P T P P + P P V T + P A
Sbjct: 212 LPPAPSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAKPTPPSASATPAPI 271
Query: 481 PEPVPSPAA 489
A
Sbjct: 272 GGITLDDDA 280
Score = 36.2 bits (84), Expect = 0.033
Identities = 14/72 (19%), Positives = 19/72 (26%)
Query: 359 PSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTP 418
P P + + SPP P P V+ VP P+ P +
Sbjct: 213 PPAPSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAKPTPPSASATPAPIG 272
Query: 419 APVSTPTETAAA 430
A A
Sbjct: 273 GITLDDDAIAKA 284
Score = 35.4 bits (82), Expect = 0.060
Identities = 20/86 (23%), Positives = 29/86 (33%), Gaps = 2/86 (2%)
Query: 435 APVPSP--TTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAP 492
P P P E +T + P + AS P+ +PG P P P+
Sbjct: 147 DPNPGPPLDEEDEDADVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPSS 206
Query: 493 VETPSVPAEPTPTASPVQTSQPCAST 518
S+P P+ S P + T
Sbjct: 207 PSDSSLPPAPSSFQSDTPPPSPESPT 232
>gnl|CDD|235904 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated.
Length = 484
Score = 54.2 bits (131), Expect = 9e-08
Identities = 24/117 (20%), Positives = 33/117 (28%), Gaps = 9/117 (7%)
Query: 385 VPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPV 444
P A + P + PA + P A E P V + V P
Sbjct: 52 APPAAAAPAAAQPPPAAAPAAVSRPAAPAAEPAPWLVEHA--KRLTAQREQLVARAAAPA 109
Query: 445 ESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAE 501
A + A A + +A A VP+ AA A +V A
Sbjct: 110 APEAQAPAAPAERAAAENAARRLARAAAAAPRP-----RVPADAAAAV--ADAVKAR 159
Score = 48.4 bits (116), Expect = 6e-06
Identities = 23/115 (20%), Positives = 29/115 (25%), Gaps = 7/115 (6%)
Query: 392 ASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAAST 451
A++ P + A PP A P + A + T E A
Sbjct: 49 AALAPPAAAAPAAAQPPPAAAPAAVSRPAAPAA---EPAPWLVEHAKRLTAQREQLVAR- 104
Query: 452 PVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTA 506
A A P A A AE + AAP P A
Sbjct: 105 ---AAAPAAPEAQAPAAPAERAAAENAARRLARAAAAAPRPRVPADAAAAVADAV 156
Score = 36.1 bits (84), Expect = 0.040
Identities = 24/104 (23%), Positives = 30/104 (28%), Gaps = 18/104 (17%)
Query: 428 AAASPVAAPVPSPTTP---VESPAASTPVEAP---------AAPVDTPVTPVASAPPTPA 475
AA+ AA P P V PAA AP A + V A+ A
Sbjct: 54 PAAAAPAAAQPPPAAAPAAVSRPAAPAAEPAPWLVEHAKRLTAQREQLVARAAAPAAPEA 113
Query: 476 ETPGAP------EPVPSPAAPAPVETPSVPAEPTPTASPVQTSQ 513
+ P AP E A A P A+ +
Sbjct: 114 QAPAAPAERAAAENAARRLARAAAAAPRPRVPADAAAAVADAVK 157
Score = 35.7 bits (83), Expect = 0.063
Identities = 20/112 (17%), Positives = 22/112 (19%), Gaps = 22/112 (19%)
Query: 428 AAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPP--------------- 472
A S +AA P + P APAA AP
Sbjct: 43 LADSDLAALAPPAAAAPAAAQPP-PAAAPAAVSRPAAPAAEPAPWLVEHAKRLTAQREQL 101
Query: 473 ------TPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQTSQPCAST 518
A AP AA A V A
Sbjct: 102 VARAAAPAAPEAQAPAAPAERAAAENAARRLARAAAAAPRPRVPADAAAAVA 153
Score = 33.8 bits (78), Expect = 0.22
Identities = 23/113 (20%), Positives = 36/113 (31%), Gaps = 5/113 (4%)
Query: 354 SQTIEPSKPPAAEPSQTTSESTEKKESSPPTV-PEVKPAASVEPVPVSPVPAPSTPPVAT 412
+ PPAA P+ + + E +P V + A E + + A
Sbjct: 57 AAPAAAQPPPAAAPAAVSRPAAPAAEPAPWLVEHAKRLTAQREQLVARAAAPAAPEAQAP 116
Query: 413 PTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVT 465
A A AA P P V + AA+ +A A ++ V
Sbjct: 117 AAPAERAAAENAARRLA--RAAAAAPRP--RVPADAAAAVADAVKARIERIVN 165
>gnl|CDD|237863 PRK14949, PRK14949, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 944
Score = 53.2 bits (128), Expect = 3e-07
Identities = 30/164 (18%), Positives = 45/164 (27%), Gaps = 23/164 (14%)
Query: 351 KKISQTIEPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPV 410
KK S +P PP+ P + S+ SSP A+ S P
Sbjct: 637 KKSSADRKPKTPPSRAPPASLSKPA----SSPD--ASQTSASFDLDPDFELATHQSVPEA 690
Query: 411 ATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASA 470
A + + PAP + P P + A P A + V
Sbjct: 691 ALASGSAPAPPP-VPDPYDRPPWEEA------PEVASANDGPNNAAEGNLSESV------ 737
Query: 471 PPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQTSQP 514
+ + A + + P T + QTS
Sbjct: 738 ----EDASNSELQAVEQQATHQPQVQAEAQSPASTTALTQTSSE 777
Score = 45.5 bits (108), Expect = 7e-05
Identities = 23/141 (16%), Positives = 39/141 (27%), Gaps = 16/141 (11%)
Query: 354 SQTIEPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPST------ 407
+ SKP ++ + TS S + + P A+ +P P P
Sbjct: 652 APPASLSKPASSPDASQTSASFDLDPDFELATHQSVPEAA-LASGSAPAPPPVPDPYDRP 710
Query: 408 ----PPVATPTETTPA-----PVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAA 458
P P +S E A+ S + A T + A + + A
Sbjct: 711 PWEEAPEVASANDGPNNAAEGNLSESVEDASNSELQAVEQQATHQPQVQAEAQSPASTTA 770
Query: 459 PVDTPVTPVASAPPTPAETPG 479
T + + G
Sbjct: 771 LTQTSSEVQDTELNLVLLSSG 791
Score = 35.5 bits (82), Expect = 0.089
Identities = 15/150 (10%), Positives = 33/150 (22%), Gaps = 5/150 (3%)
Query: 363 PAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPV--PVSPVPAPSTPPVATPTETTPAP 420
P + + + + ++ P PA + + E +
Sbjct: 377 PEGQTPSALAAAVQAPHANEPQFVNAAPAEKKTALTEQTTAQQQVQAANAEAVAEADASA 436
Query: 421 VSTPTETAAASPVAAPVPSPT---TPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAET 477
T A + + + + S A S EA ++ T ++
Sbjct: 437 EPADTVEQALDDESELLAALNAEQAVILSQAQSQGFEASSSLDADNSAVPEQIDSTAEQS 496
Query: 478 PGAPEPVPSPAAPAPVETPSVPAEPTPTAS 507
P + S
Sbjct: 497 VVNPSVTDTQVDDTSASNNSAADNTVDDNY 526
Score = 35.1 bits (81), Expect = 0.10
Identities = 21/91 (23%), Positives = 24/91 (26%), Gaps = 7/91 (7%)
Query: 397 VPVSPV-------PAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAA 449
VP PV PA + P A V P AAP T E A
Sbjct: 358 VPEKPVKRWQVDDPAEISLPEGQTPSALAAAVQAPHANEPQFVNAAPAEKKTALTEQTTA 417
Query: 450 STPVEAPAAPVDTPVTPVASAPPTPAETPGA 480
V+A A A T +
Sbjct: 418 QQQVQAANAEAVAEADASAEPADTVEQALDD 448
Score = 29.3 bits (66), Expect = 5.7
Identities = 14/70 (20%), Positives = 18/70 (25%)
Query: 444 VESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPT 503
+ P TP AA PAE A + AE
Sbjct: 374 ISLPEGQTPSALAAAVQAPHANEPQFVNAAPAEKKTALTEQTTAQQQVQAANAEAVAEAD 433
Query: 504 PTASPVQTSQ 513
+A P T +
Sbjct: 434 ASAEPADTVE 443
Score = 28.9 bits (65), Expect = 7.9
Identities = 23/87 (26%), Positives = 29/87 (33%), Gaps = 9/87 (10%)
Query: 432 PVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPA 491
P AP S + P SP AS + D + S P + AP P P P
Sbjct: 649 PSRAPPASLSKPASSPDASQTSASFDLDPDFELATHQSVPEAALASGSAPAPPP---VPD 705
Query: 492 PVETPSVPAEPTPTASPVQTSQPCAST 518
P + P P E +P S
Sbjct: 706 PYDRP--PWE----EAPEVASANDGPN 726
>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional.
Length = 333
Score = 52.0 bits (125), Expect = 3e-07
Identities = 28/128 (21%), Positives = 38/128 (29%), Gaps = 4/128 (3%)
Query: 385 VPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPV 444
V V A + + P+P P + P + A P P P
Sbjct: 68 VHRVNHAPANAQEHEAARPSPQHQ--YQPPYASAQPRQPVQQPPEAQVPPQHAPRPAQPA 125
Query: 445 ESPAASTPV-EAPAAPVDTPVTPVASAPPTPAE-TPGAPEPVPSPAAPAPVETPSVPAEP 502
P P P+ PV+P + P P P + PA P P AEP
Sbjct: 126 PQPVQQPAYQPQPEQPLQQPVSPQVAPAPQPVHSAPQPAQQAFQPAEPVAAPQPEPVAEP 185
Query: 503 TPTASPVQ 510
P +
Sbjct: 186 APVMDKPK 193
Score = 48.1 bits (115), Expect = 5e-06
Identities = 31/138 (22%), Positives = 40/138 (28%), Gaps = 11/138 (7%)
Query: 359 PSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTP-PVATPTETT 417
A + + + P +P V+ P + VP P P +
Sbjct: 70 RVNHAPANAQEHEAARPSPQHQYQPPYASAQPRQPVQQPPEAQVPPQHAPRPAQPAPQPV 129
Query: 418 PAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAET 477
P P P+ PV P P S P PA P PVA+ P P
Sbjct: 130 QQPAYQPQPEQ---PLQQPVSPQVAPAPQPVHSAP--QPAQQAFQPAEPVAAPQPEPVA- 183
Query: 478 PGAPEPVPSPAAPAPVET 495
EP P P E
Sbjct: 184 ----EPAPVMDKPKRKEA 197
Score = 47.3 bits (113), Expect = 1e-05
Identities = 27/100 (27%), Positives = 33/100 (33%), Gaps = 9/100 (9%)
Query: 424 PTETAAASPV---AAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPP------TP 474
P+ P A P P E+ PA P PV A P P
Sbjct: 86 PSPQHQYQPPYASAQPRQPVQQPPEAQVPPQHAPRPAQPAPQPVQQPAYQPQPEQPLQQP 145
Query: 475 AETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQTSQP 514
AP P P +AP P + PAEP P ++P
Sbjct: 146 VSPQVAPAPQPVHSAPQPAQQAFQPAEPVAAPQPEPVAEP 185
Score = 44.3 bits (105), Expect = 8e-05
Identities = 26/127 (20%), Positives = 33/127 (25%), Gaps = 6/127 (4%)
Query: 379 ESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVP 438
++ +P+ + P P P P P + A PV P
Sbjct: 75 PANAQEHEAARPSPQHQYQPPYASAQPRQPVQQPPEAQVPPQHAPRPAQPAPQPVQQP-- 132
Query: 439 SPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAP--EPVPSPAAPAPVETP 496
P PV AP PV A P A P P P P P A
Sbjct: 133 -AYQPQPEQPLQQPVSPQVAPAPQPVHS-APQPAQQAFQPAEPVAAPQPEPVAEPAPVMD 190
Query: 497 SVPAEPT 503
+
Sbjct: 191 KPKRKEA 197
>gnl|CDD|178748 PLN03209, PLN03209, translocon at the inner envelope of chloroplast
subunit 62; Provisional.
Length = 576
Score = 52.2 bits (125), Expect = 4e-07
Identities = 44/177 (24%), Positives = 67/177 (37%), Gaps = 22/177 (12%)
Query: 353 ISQTIEPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVAT 412
I++T P P ++ S+ KES P+ P V P SP P PP
Sbjct: 306 IAETTAPLTPMEELLAKIPSQRVPPKESDAADGPKPVPTKPVTPEAPSP-PIEEEPP--Q 362
Query: 413 PTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPP 472
P P P+S T P +P+P+P + SPA+S V+A A P + V P +
Sbjct: 363 PKAVVPRPLSPYTAYEDLKPPTSPIPTPPS--SSPASSKSVDAVAKPAEPDVVPSPGSAS 420
Query: 473 TPAETPGAPEP---------------VPSPAAPAPVETPSVPAEPTPTASPVQTSQP 514
E A + P +P+P T P+ +++ + P
Sbjct: 421 NVPEVEPAQVEAKKTRPLSPYARYEDLKPPTSPSP--TAPTGVSPSVSSTSSVPAVP 475
Score = 49.9 bits (119), Expect = 2e-06
Identities = 44/170 (25%), Positives = 64/170 (37%), Gaps = 9/170 (5%)
Query: 354 SQTIEPSKPPAAE-PSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPA-----PST 407
SQ + P + AA+ P ++ + SPP E +V P P+SP A P T
Sbjct: 325 SQRVPPKESDAADGPKPVPTKPVTPEAPSPPIEEEPPQPKAVVPRPLSPYTAYEDLKPPT 384
Query: 408 PPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAAST-PVEAPAAPVDTPVTP 466
P+ TP ++ S + A VPSP + P VEA +P
Sbjct: 385 SPIPTPP-SSSPASSKSVDAVAKPAEPDVVPSPGSASNVPEVEPAQVEAKKTRPLSPYAR 443
Query: 467 VASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQTSQPCA 516
P + +P AP V + P+VP TA+ + P A
Sbjct: 444 YEDLKPPTSPSPTAPTGVSPSVSSTSSV-PAVPDTAPATAATDAAAPPPA 492
Score = 49.2 bits (117), Expect = 4e-06
Identities = 39/151 (25%), Positives = 54/151 (35%), Gaps = 4/151 (2%)
Query: 359 PSKPPAAEPSQTT---SESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTE 415
P PA ++ T S ++ PPT P V P S P+ P A T
Sbjct: 423 PEVEPAQVEAKKTRPLSPYARYEDLKPPTSPSPTAPTGVSPSVSSTSSVPAVPDTAPATA 482
Query: 416 TTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPA 475
T A P SP A SPAA AP++ + ++ P A
Sbjct: 483 ATDAAAPPPANMRPLSPYAVYDDLKPPTSPSPAAPVGKVAPSSTNEVVKVGNSAPPTALA 542
Query: 476 ETPGAPEPVPSPAAPAPV-ETPSVPAEPTPT 505
+ +P P P +P + E P PTP+
Sbjct: 543 DEQHHAQPKPRPLSPYTMYEDLKPPTSPTPS 573
Score = 46.8 bits (111), Expect = 2e-05
Identities = 51/184 (27%), Positives = 63/184 (34%), Gaps = 28/184 (15%)
Query: 358 EPSKPPAAEP---SQTTSESTEKKESSP-PTVPEVKPAASVE----PVPVSPVPAPSTPP 409
EP +P A P S T+ K +SP PT P PA+S P P PS
Sbjct: 359 EPPQPKAVVPRPLSPYTAYEDLKPPTSPIPTPPSSSPASSKSVDAVAKPAEPDVVPSPGS 418
Query: 410 VATPTETTPAPVSTPTETAAA--------SPVAAPVPSPTTPVESPAASTPVEAPAAPVD 461
+ E PA V + P +P P+ T V +ST PA P
Sbjct: 419 ASNVPEVEPAQVEAKKTRPLSPYARYEDLKPPTSPSPTAPTGVSPSVSSTSS-VPAVPDT 477
Query: 462 TPVTPVAS--APPTPAETPGAPEPV---------PSPAAPAPVETPSVPAEPTPTASPVQ 510
P T APP P +P V PSPAAP PS E +
Sbjct: 478 APATAATDAAAPPPANMRPLSPYAVYDDLKPPTSPSPAAPVGKVAPSSTNEVVKVGNSAP 537
Query: 511 TSQP 514
+
Sbjct: 538 PTAL 541
Score = 46.5 bits (110), Expect = 3e-05
Identities = 41/161 (25%), Positives = 64/161 (39%), Gaps = 8/161 (4%)
Query: 362 PPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPV---ATPTETTP 418
PP++ P+ + S K + P VP A++V V + V A T P+ A + P
Sbjct: 390 PPSSSPASSKSVDAVAKPAEPDVVPSPGSASNVPEVEPAQVEAKKTRPLSPYARYEDLKP 449
Query: 419 APVSTPTETAAASPVAAPVPSPTTPVES--PAASTPVEAPAAPVDTPVTPVA---SAPPT 473
+PT SP + S ++ A+T AP P++P A P
Sbjct: 450 PTSPSPTAPTGVSPSVSSTSSVPAVPDTAPATAATDAAAPPPANMRPLSPYAVYDDLKPP 509
Query: 474 PAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQTSQP 514
+ +P AP +P++ V A PT A +QP
Sbjct: 510 TSPSPAAPVGKVAPSSTNEVVKVGNSAPPTALADEQHHAQP 550
Score = 33.4 bits (76), Expect = 0.36
Identities = 41/125 (32%), Positives = 53/125 (42%), Gaps = 17/125 (13%)
Query: 399 VSPVPAPSTPPVATPTE----TTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPV- 453
V V A +T P+ TP E P+ P E+ AA P P PT PV A S P+
Sbjct: 302 VVEVIAETTAPL-TPMEELLAKIPSQRVPPKESDAAD---GPKPVPTKPVTPEAPSPPIE 357
Query: 454 EAPAAPVDTPVTPVASAPPTPAETPGAP-EPVPSPA-----APAPVETPSVPAEPTPTAS 507
E P P P++ P T E P P+P+P + V+ + PAEP S
Sbjct: 358 EEPPQPKAVVPRPLS--PYTAYEDLKPPTSPIPTPPSSSPASSKSVDAVAKPAEPDVVPS 415
Query: 508 PVQTS 512
P S
Sbjct: 416 PGSAS 420
Score = 33.0 bits (75), Expect = 0.43
Identities = 22/71 (30%), Positives = 29/71 (40%), Gaps = 3/71 (4%)
Query: 444 VESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPT 503
VE A +T AP P++ + + S P E+ A P P P P E PS P E
Sbjct: 303 VEVIAETT---APLTPMEELLAKIPSQRVPPKESDAADGPKPVPTKPVTPEAPSPPIEEE 359
Query: 504 PTASPVQTSQP 514
P +P
Sbjct: 360 PPQPKAVVPRP 370
>gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional.
Length = 991
Score = 51.2 bits (122), Expect = 1e-06
Identities = 42/158 (26%), Positives = 53/158 (33%), Gaps = 10/158 (6%)
Query: 359 PSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTP 418
P +PP E T + T + P P P + +P+ P PP PT P
Sbjct: 651 PHQPPQVEI--TPYKPTWTQIGHIPYQP--SPTGANTMLPIQWAPGTMQPPPRAPTPMRP 706
Query: 419 APVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETP 478
P + P A P AA + A P AP P + PP A
Sbjct: 707 -PAAPP--GRAQRPAAATGRARPPAAAPGRARPPAAAPGRARPPAAAPGRARPPAAAPGR 763
Query: 479 GAPEPVPSPAAPAPVETPSVPAEPT--PTASPVQTSQP 514
A P +P AP P P P P P +P P
Sbjct: 764 -ARPPAAAPGAPTPQPPPQAPPAPQQRPRGAPTPQPPP 800
Score = 42.4 bits (99), Expect = 6e-04
Identities = 40/148 (27%), Positives = 47/148 (31%), Gaps = 21/148 (14%)
Query: 360 SKPPAAEPSQTTSESTEKKESSPPTVPEV---KPAASVEPV-PVSPVPAPSTPPVATPTE 415
P P PP P +PAA+ P + P + PP A P
Sbjct: 684 MLPIQWAPGTMQPPPRAPTPMRPPAAPPGRAQRPAAATGRARPPAAAPGRARPPAAAPG- 742
Query: 416 TTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPA 475
A A P AAP + P +P A TP P APP P
Sbjct: 743 --RARPPAAAPGRARPPAAAPGRARP-PAAAPGAPTPQPPP------------QAPPAPQ 787
Query: 476 ETP-GAPEPVPSPAAPAPVETPSVPAEP 502
+ P GAP P P P A A P
Sbjct: 788 QRPRGAPTPQPPPQAGPTSMQLMPRAAP 815
Score = 35.4 bits (81), Expect = 0.089
Identities = 42/228 (18%), Positives = 77/228 (33%), Gaps = 15/228 (6%)
Query: 305 ARALAQVPIGTPISAEQLAYEDHIHRQHWEEGHIDYLGKDSWDNIWKKISQTIEPSKPPA 364
A P+ P + ++ +D L KD D + ++ + PS P
Sbjct: 473 APLEPWQPLPHPQVTPVILHQPPAQGVQAHGSMLDLLEKDDEDMEQRVMATLLPPSPPQP 532
Query: 365 ----AEPSQTTSE---STEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTET- 416
P T + +++ S+ P ++ PA + P+ + P+ +P+T +A+ +
Sbjct: 533 RAGRRAPCVYTEDLDIESDEPASTEPVHDQLLPAPGLGPLQIQPLTSPTTSQLASSAPSY 592
Query: 417 --TPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPV-----EAPAAPVDTPVTPVAS 469
TP PV P++T + +P + P + P P+ + V P
Sbjct: 593 AQTPWPVPHPSQTPEPPTTQSHIPETSAPRQWPMPLRPIPMRPLRMQPITFNVLVFPTPH 652
Query: 470 APPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQTSQPCAS 517
PP TP P P +P P +
Sbjct: 653 QPPQVEITPYKPTWTQIGHIPYQPSPTGANTMLPIQWAPGTMQPPPRA 700
Score = 29.6 bits (66), Expect = 4.5
Identities = 35/160 (21%), Positives = 52/160 (32%), Gaps = 11/160 (6%)
Query: 361 KPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAP 420
+PPAA P + + +P P+ PA P P P PP A PT P
Sbjct: 755 RPPAAAPGRARPPAAAPGAPTPQPPPQAPPAPQQRP---RGAPTPQPPPQAGPTSMQLMP 811
Query: 421 VSTPTETAAASPVAAPVPSPTTPVESPAASTP--VEAPAAPVDTPVTPVASAPPTPAETP 478
+ P + + + + P+ P +E AA TP +P +
Sbjct: 812 RAAPGQQGPTKQILRQLLTGGVKRGRPSLKKPAALERQAAAGPTP------SPGSGTSDK 865
Query: 479 GAPEPVPSPAAPAPVETPSVPAEPTPTASPVQTSQPCAST 518
PV P P++ A+ T P T
Sbjct: 866 IVQAPVFYPPVLQPIQVMRQLGSVRAAAASTVTQAPTEYT 905
>gnl|CDD|185616 PTZ00436, PTZ00436, 60S ribosomal protein L19-like protein;
Provisional.
Length = 357
Score = 49.9 bits (118), Expect = 2e-06
Identities = 45/188 (23%), Positives = 69/188 (36%), Gaps = 5/188 (2%)
Query: 319 AEQLA---YEDHIHRQHWEEGHIDYLGKDSWDNIWKKISQTIEPSKPPAAEPSQTTSEST 375
AEQLA +D HR + + KD + + + AA+ + S
Sbjct: 156 AEQLAAKRLKDEQHRHKARKQELRKREKDRERARREDAAAAAAAKQKAAAKKAAAPSGKK 215
Query: 376 EKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAA 435
K ++P A+ P + PA + A + P + AA AA
Sbjct: 216 SAKAAAPAKAAAAPAKAAAPPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAAAPPAKAA 275
Query: 436 PVPSPTTPVESPAASTPVEAPAAPVDTPVTP--VASAPPTPAETPGAPEPVPSPAAPAPV 493
P+ + AA+ P +A AAP P A+AP A P P+ AA P
Sbjct: 276 APPAKAAAPPAKAAAPPAKAAAAPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAATPPA 335
Query: 494 ETPSVPAE 501
+ + PA+
Sbjct: 336 KAAAPPAK 343
Score = 45.7 bits (107), Expect = 3e-05
Identities = 39/141 (27%), Positives = 57/141 (40%), Gaps = 8/141 (5%)
Query: 361 KPPAAEPSQTTSESTEKKESSPPTVPEVKPA-ASVEPVPVSPVPAPSTPPVATPTETTPA 419
K A + + + K ++PP PA A+ P + PA + P A
Sbjct: 214 KKSAKAAAPAKAAAAPAKAAAPPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAAAPPAK 273
Query: 420 PVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPV-ASAPPTPAETP 478
+ P + AA AA P+ + AA+ P +A AAP P A+APP A TP
Sbjct: 274 AAAPPAKAAAPPAKAAAPPAKAAAAPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAATP 333
Query: 479 GAPEPVPSPAAPAPVETPSVP 499
P+ AA P + + P
Sbjct: 334 ------PAKAAAPPAKAAAAP 348
Score = 42.6 bits (99), Expect = 3e-04
Identities = 34/115 (29%), Positives = 49/115 (42%), Gaps = 7/115 (6%)
Query: 411 ATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPV-AS 469
A P+ A + P + AAA AA P+ + AA+ P +A A P P A+
Sbjct: 209 AAPSGKKSAKAAAPAKAAAAPAKAAAPPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAA 268
Query: 470 APPTPAETPGAPEPV-PSPAAPAPVETPSVPAEPT-----PTASPVQTSQPCAST 518
APP A P A P+ AA P + + PA+ A+P + + P A
Sbjct: 269 APPAKAAAPPAKAAAPPAKAAAPPAKAAAAPAKAAAAPAKAAAAPAKAAAPPAKA 323
Score = 38.0 bits (87), Expect = 0.009
Identities = 28/110 (25%), Positives = 43/110 (39%), Gaps = 1/110 (0%)
Query: 360 SKPPAAEPSQTTSESTEKKESSPPTVPEVKPA-ASVEPVPVSPVPAPSTPPVATPTETTP 418
+ P A + + + K ++PP PA A+ P + PA + P A
Sbjct: 241 AAPAKAAAAPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAAPA 300
Query: 419 APVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVA 468
+ P + AAA AA P+ + AA+ P +A A P PV
Sbjct: 301 KAAAAPAKAAAAPAKAAAPPAKAAAPPAKAATPPAKAAAPPAKAAAAPVG 350
Score = 33.4 bits (75), Expect = 0.30
Identities = 30/100 (30%), Positives = 43/100 (43%), Gaps = 9/100 (9%)
Query: 419 APVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTP--VASAPPTPAE 476
A + + AAA AAP + +S A+ P +A AAP P A+AP A
Sbjct: 194 AAAAAAKQKAAAKKAAAP-----SGKKSAKAAAPAKAAAAPAKAAAPPAKAAAAPAKAAA 248
Query: 477 TPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQTSQPCA 516
P P+ AA P + + PA+ A P + + P A
Sbjct: 249 APAKAAAPPAKAAAPPAKAAAPPAK--AAAPPAKAAAPPA 286
Score = 31.8 bits (71), Expect = 0.85
Identities = 23/100 (23%), Positives = 36/100 (36%), Gaps = 1/100 (1%)
Query: 360 SKPPAAEPSQTTSESTEKKESSPPTVPEVKPA-ASVEPVPVSPVPAPSTPPVATPTETTP 418
+ P A + + K ++PP PA A+ P + PA + A
Sbjct: 255 APPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAAPAKAAAAPAKAAAAPA 314
Query: 419 APVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAA 458
+ P + AA AA P+ + AA+ PV A
Sbjct: 315 KAAAPPAKAAAPPAKAATPPAKAAAPPAKAAAAPVGKKAG 354
>gnl|CDD|236333 PRK08691, PRK08691, DNA polymerase III subunits gamma and tau;
Validated.
Length = 709
Score = 49.3 bits (117), Expect = 4e-06
Identities = 38/152 (25%), Positives = 50/152 (32%), Gaps = 9/152 (5%)
Query: 363 PAAEPSQTTSESTEKKE-SSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPV 421
P A S + E E SP K A+ +P P TP T +
Sbjct: 360 PLAAASCDANAVIENTELQSPSAQTAEKETAAKKPQPRPEAETAQTPV------QTASAA 413
Query: 422 STPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAP 481
+ P+E A PV+ + P E A A AS TP E +
Sbjct: 414 AMPSEGKTAGPVSNQENNDVPPWEDAPDEAQTAAGTAQTSAKSIQTASEAETPPENQVSK 473
Query: 482 EPVPSPAAPAPV-ETPS-VPAEPTPTASPVQT 511
AP+ E PS P + TP V+T
Sbjct: 474 NKAADNETDAPLSEVPSENPIQATPNDEAVET 505
Score = 38.9 bits (90), Expect = 0.006
Identities = 31/158 (19%), Positives = 51/158 (32%), Gaps = 17/158 (10%)
Query: 350 WKKISQTIEPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPP 409
W+ + + A +++ ++E + V + K A + P+S VP+ +
Sbjct: 436 WEDAPDEAQTAAGTAQTSAKSIQTASEAETPPENQVSKNKAADNETDAPLSEVPSEN--- 492
Query: 410 VATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVAS 469
P + TP + TET A A P P E P
Sbjct: 493 ---PIQATPNDEAVETETFAHEAPAEPFYGYGFPDNDCPPEDGAEIPPPD---------W 540
Query: 470 APPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTAS 507
PA+T G A + + P+ P P S
Sbjct: 541 EHAAPADTAGGGA--DEEAEAGGIGGNNTPSAPPPEFS 576
Score = 37.8 bits (87), Expect = 0.016
Identities = 26/115 (22%), Positives = 37/115 (32%), Gaps = 10/115 (8%)
Query: 400 SPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAP 459
+P+ A S A T + +P+ A AA P P E+ A TPV+ +A
Sbjct: 359 APLAAASCDANAVIENT---ELQSPSAQTAEKETAAKKPQPRP--EAETAQTPVQTASAA 413
Query: 460 VDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQTSQP 514
A P AP +T + A T S S+
Sbjct: 414 AMPSEGKTAGPVSNQENNDVPPW----EDAPDEAQTAAGTA-QTSAKSIQTASEA 463
Score = 33.9 bits (77), Expect = 0.21
Identities = 33/130 (25%), Positives = 46/130 (35%), Gaps = 6/130 (4%)
Query: 352 KISQTIEPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSP-VPAPSTPPV 410
K + +P P AE +QT T + P P ++ E V P AP
Sbjct: 387 KETAAKKPQPRPEAETAQT-PVQTASAAAMPSEGKTAGPVSNQENNDVPPWEDAPDEAQT 445
Query: 411 ATPTETTPAP-VSTPTETAAASP-VAAPVPSPTTPVESPAASTPVEAP--AAPVDTPVTP 466
A T T A + T +E + + ++P + P E P A P D V
Sbjct: 446 AAGTAQTSAKSIQTASEAETPPENQVSKNKAADNETDAPLSEVPSENPIQATPNDEAVET 505
Query: 467 VASAPPTPAE 476
A PAE
Sbjct: 506 ETFAHEAPAE 515
>gnl|CDD|227665 COG5373, COG5373, Predicted membrane protein [Function unknown].
Length = 931
Score = 48.7 bits (116), Expect = 6e-06
Identities = 32/92 (34%), Positives = 38/92 (41%), Gaps = 9/92 (9%)
Query: 400 SPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAP 459
S V + PVA E AP E A A+P+ A S +P P APA
Sbjct: 37 SLVAEGAAGPVAKAAEQMAAP-----EAAEAAPLPAAAESIASPEVPPP---VPPAPAQE 88
Query: 460 VDTPVTPVASAPPTPAETPGAPEPV-PSPAAP 490
+ P SA P P+ P EPV PS AA
Sbjct: 89 GEAPAAEQPSAVPAPSAAPAPAEPVEPSLAAN 120
Score = 43.3 bits (102), Expect = 3e-04
Identities = 22/87 (25%), Positives = 32/87 (36%), Gaps = 6/87 (6%)
Query: 430 ASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETP----GAPEPVP 485
+ + V + AA AP A P+ A + +P P +
Sbjct: 32 LRELRSLVAEGAAGPVAKAAEQM-AAPEAAEAAPLPAAAESIASPEVPPPVPPAPAQEGE 90
Query: 486 SPAAPAPVETPSVPAEPTPTASPVQTS 512
+PAA P P+ A P P A PV+ S
Sbjct: 91 APAAEQPSAVPAPSAAPAP-AEPVEPS 116
Score = 37.1 bits (86), Expect = 0.024
Identities = 22/104 (21%), Positives = 30/104 (28%), Gaps = 25/104 (24%)
Query: 378 KESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPV 437
+ AA P+P + +A+P P
Sbjct: 46 PVAKAAEQMAAPEAAEAAPLP------AAAESIASPEVPPP-----------------VP 82
Query: 438 PSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAP 481
P+P E+PAA A AP P P P+ A P A
Sbjct: 83 PAPAQEGEAPAAE-QPSAVPAPSAAP-APAEPVEPSLAANPFAA 124
Score = 31.3 bits (71), Expect = 1.3
Identities = 20/97 (20%), Positives = 27/97 (27%), Gaps = 10/97 (10%)
Query: 354 SQTIEPSKPP-AAEPSQTTSESTEKKESSPPTVPEVK-PAASVEPVPVSPVPAPSTPPVA 411
S E + P A Q + + P + P PAP+ A
Sbjct: 37 SLVAEGAAGPVAKAAEQMAAPEAAEAAPLPAAAESIASPEVPPP-----VPPAPAQEGEA 91
Query: 412 TPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPA 448
E A + A A PV PS + A
Sbjct: 92 PAAEQPSAVPAPSAAPAPAEPV---EPSLAANPFAAA 125
>gnl|CDD|237019 PRK11907, PRK11907, bifunctional 2',3'-cyclic nucleotide
2'-phosphodiesterase/3'-nucleotidase precursor protein;
Reviewed.
Length = 814
Score = 48.7 bits (116), Expect = 7e-06
Identities = 21/98 (21%), Positives = 33/98 (33%), Gaps = 8/98 (8%)
Query: 406 STPPVATPTETTPAPVSTPTETAAASPVAAPV--PSPTTPVESPAASTPVEAPAAPVDTP 463
S P +A E +T TE +PV + + T AA+T EAP +
Sbjct: 21 SNPKLAQAEEIVTTTPATSTEAEQTTPVESDATEEADNTET-PVAATTAAEAP-----SS 74
Query: 464 VTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAE 501
++ PT T + A + V +
Sbjct: 75 SETAETSDPTSEATDTTTSEARTVTPAATETSKPVEGQ 112
Score = 43.7 bits (103), Expect = 2e-04
Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 8/94 (8%)
Query: 422 STPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAA-PVDTPVTPVASAP----PTPAE 476
++ + A A + P+ +T E +TPVE+ A D TPVA+ P+ +E
Sbjct: 20 ASNPKLAQAEEIVTTTPATSTEAEQ---TTPVESDATEEADNTETPVAATTAAEAPSSSE 76
Query: 477 TPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQ 510
T +P E +V T T+ PV+
Sbjct: 77 TAETSDPTSEATDTTTSEARTVTPAATETSKPVE 110
Score = 42.9 bits (101), Expect = 3e-04
Identities = 22/98 (22%), Positives = 33/98 (33%), Gaps = 14/98 (14%)
Query: 364 AAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVST 423
AE TT+ +T + T P A E + P TT A +
Sbjct: 27 QAEEIVTTTPATSTEAEQ--TTPVESDAT--EEADNTETP---------VAATTAAEAPS 73
Query: 424 PTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVD 461
+ETA S + TT E+ + + PV+
Sbjct: 74 SSETAETSDPT-SEATDTTTSEARTVTPAATETSKPVE 110
Score = 38.3 bits (89), Expect = 0.011
Identities = 22/102 (21%), Positives = 32/102 (31%), Gaps = 22/102 (21%)
Query: 380 SSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTE----TTPAPVSTPTETAAASPVAA 435
+S P + + + V P + A T PV + T PV+ T A
Sbjct: 20 ASNPKLAQAEEI--VTTTPATSTEAEQTTPVESDATEEADNTETPVAATTAAEA------ 71
Query: 436 PVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAET 477
PS + E+ T T + TPA T
Sbjct: 72 --PSSSETAETS--------DPTSEATDTTTSEARTVTPAAT 103
Score = 37.9 bits (88), Expect = 0.014
Identities = 30/94 (31%), Positives = 39/94 (41%), Gaps = 10/94 (10%)
Query: 427 TAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTP-AETPGAPEPVP 485
TA+ +A TT PA ST E PV++ T A TP A T A P
Sbjct: 19 TASNPKLAQAEEIVTTT---PATSTEAEQ-TTPVESDATEEADNTETPVAATTAAEAPSS 74
Query: 486 SPAA----PAPVETPSVPAE-PTPTASPVQTSQP 514
S A P T + +E T T + +TS+P
Sbjct: 75 SETAETSDPTSEATDTTTSEARTVTPAATETSKP 108
Score = 36.0 bits (83), Expect = 0.046
Identities = 19/80 (23%), Positives = 29/80 (36%), Gaps = 1/80 (1%)
Query: 355 QTIEPSKPPAAEPSQTTSESTEKKESSPPT-VPEVKPAASVEPVPVSPVPAPSTPPVATP 413
+ + + + E QTT ++ E + T P A+ P AT
Sbjct: 30 EIVTTTPATSTEAEQTTPVESDATEEADNTETPVAATTAAEAPSSSETAETSDPTSEATD 89
Query: 414 TETTPAPVSTPTETAAASPV 433
T T+ A TP T + PV
Sbjct: 90 TTTSEARTVTPAATETSKPV 109
>gnl|CDD|236940 PRK11633, PRK11633, cell division protein DedD; Provisional.
Length = 226
Score = 46.5 bits (111), Expect = 1e-05
Identities = 30/114 (26%), Positives = 39/114 (34%), Gaps = 9/114 (7%)
Query: 397 VPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAP 456
+P+ P P P P T P + P E AA + A +P+ V P
Sbjct: 41 IPLVPKPGDRDEPDMMPAATQALP-TQPPEGAAEAVRAGDAAAPSL------DPATVAPP 93
Query: 457 AAPVDTPVTPVASAPPTPAETPGAPEPVPSPAA-PAPVETPSVPAEPTPTASPV 509
PV+ PV P P E P P+P P P P A+P
Sbjct: 94 NTPVEPEPAPVEPPKPKPVEKP-KPKPKPQQKVEAPPAPKPEPKPVVEEKAAPT 146
Score = 43.5 bits (103), Expect = 9e-05
Identities = 24/89 (26%), Positives = 28/89 (31%), Gaps = 1/89 (1%)
Query: 383 PTVPEVKPAASVEPVPVSPVPAPST-PPVATPTETTPAPVSTPTETAAASPVAAPVPSPT 441
+P P + E V APS P P T P P E PV P P P
Sbjct: 61 QALPTQPPEGAAEAVRAGDAAAPSLDPATVAPPNTPVEPEPAPVEPPKPKPVEKPKPKPK 120
Query: 442 TPVESPAASTPVEAPAAPVDTPVTPVASA 470
+ A P P V+ P A
Sbjct: 121 PQQKVEAPPAPKPEPKPVVEEKAAPTGKA 149
Score = 43.1 bits (102), Expect = 1e-04
Identities = 29/117 (24%), Positives = 35/117 (29%), Gaps = 13/117 (11%)
Query: 383 PTVPEVKPAASVEPVPVSPV--PAPSTPP----VATPTETTPAPVSTPTETAAASPVAAP 436
P VP KP EP + P+ PP A AP P A + P
Sbjct: 42 PLVP--KPGDRDEPDMMPAATQALPTQPPEGAAEAVRAGDAAAPSLDPATVAPPNTPVEP 99
Query: 437 VPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPV 493
P+P P + P P P P P P E +P A V
Sbjct: 100 EPAPVEPPKPKPVEKPKPKPKPQQKVEAPP----APKPEPKP-VVEEKAAPTGKAYV 151
Score = 40.0 bits (94), Expect = 0.001
Identities = 34/98 (34%), Positives = 40/98 (40%), Gaps = 7/98 (7%)
Query: 358 EPSKPPAAE---PSQTTSESTEKKESSPPTVPEVKPAA-SVEPVPVSPVPAPSTPPVATP 413
EP PAA P+Q + E + P + PA + PV P PAP PP P
Sbjct: 52 EPDMMPAATQALPTQPPEGAAEAVRAGDAAAPSLDPATVAPPNTPVEPEPAPVEPPKPKP 111
Query: 414 TETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAAST 451
E P P P + A P P P P VE AA T
Sbjct: 112 VEK-PKPKPKPQQKVEAPPAPKPEPKP--VVEEKAAPT 146
Score = 38.4 bits (90), Expect = 0.004
Identities = 22/94 (23%), Positives = 31/94 (32%), Gaps = 7/94 (7%)
Query: 426 ETAAASPVAAPVPSPTTPVESPAASTPV-EAPAAPVDTPVTPVASAPPTPAETPGA---P 481
E +P+ P E A + +A A +D + P P P P
Sbjct: 52 EPDMMPAATQALPT--QPPEGAAEAVRAGDAAAPSLDPATVAPPNTPVEPEPAPVEPPKP 109
Query: 482 EPVPSP-AAPAPVETPSVPAEPTPTASPVQTSQP 514
+PV P P P + P P P PV +
Sbjct: 110 KPVEKPKPKPKPQQKVEAPPAPKPEPKPVVEEKA 143
>gnl|CDD|218439 pfam05109, Herpes_BLLF1, Herpes virus major outer envelope
glycoprotein (BLLF1). This family consists of the BLLF1
viral late glycoprotein, also termed gp350/220. It is
the most abundantly expressed glycoprotein in the viral
envelope of the Herpesviruses and is the major antigen
responsible for stimulating the production of
neutralising antibodies in vivo.
Length = 830
Score = 47.5 bits (112), Expect = 1e-05
Identities = 37/161 (22%), Positives = 54/161 (33%), Gaps = 13/161 (8%)
Query: 365 AEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTP 424
EP +TT+ T T P V A P S P +T + + ++
Sbjct: 441 VEPHKTTAVPTTPSLPPASTGPTVSTAD-----PTSGTPTGTTSSTLPEDTSPTSRTTSA 495
Query: 425 TETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAP--- 481
T A + A P+ T+P + TP P+ VT A++PPT +
Sbjct: 496 TPNATSPTPAVTTPNATSPTTQKTSDTPNATSPTPIVIGVTTTATSPPTGTTSVPNATSP 555
Query: 482 -----EPVPSPAAPAPVETPSVPAEPTPTASPVQTSQPCAS 517
PV + P PSV T S P +
Sbjct: 556 QVTEESPVNNTNTPVVTSAPSVLTSAVTTGQHGTGSSPTSQ 596
Score = 41.7 bits (97), Expect = 8e-04
Identities = 30/137 (21%), Positives = 44/137 (32%), Gaps = 2/137 (1%)
Query: 377 KKESSPPTVPEVKPAASVEPVPVSPVPA-PSTPPVATPTETTPAPVSTPTETAAASPVAA 435
K + +V V VEP + VP PS PP +T + A ++ T T S
Sbjct: 424 KAPDTTKSVIFVYTLVHVEPHKTTAVPTTPSLPPASTGPTVSTADPTSGTPTGTTSSTLP 483
Query: 436 PVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVET 495
SPT+ S + PA T + + +P P+
Sbjct: 484 EDTSPTSRTTSATPNATSPTPAVTTPN-ATSPTTQKTSDTPNATSPTPIVIGVTTTATSP 542
Query: 496 PSVPAEPTPTASPVQTS 512
P+ SP T
Sbjct: 543 PTGTTSVPNATSPQVTE 559
Score = 40.5 bits (94), Expect = 0.002
Identities = 34/167 (20%), Positives = 59/167 (35%), Gaps = 11/167 (6%)
Query: 354 SQTIEPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPV--A 411
T+ + P + P+ TT ST +++SP + + P P P ++P
Sbjct: 461 GPTVSTADPTSGTPTGTT-SSTLPEDTSPTSRTTSATPNATSPTPAVTTPNATSPTTQKT 519
Query: 412 TPTETTPAP---VSTPTETAAASPVAAPVP----SPTTPVESPAASTPVEAPAAPVDTPV 464
+ T +P V T TA + P SP ESP +T +
Sbjct: 520 SDTPNATSPTPIVIGVTTTATSPPTGTTSVPNATSPQVTEESPVNNTNTPVVTSAPSVLT 579
Query: 465 TPVASAPPTPAETPGAPEP-VPSPAAPAPVETPSVPAEPTPTASPVQ 510
+ V + +P + +P +PS + P + +A P
Sbjct: 580 SAVTTGQHGTGSSPTSQQPGIPSSSHSTPRSNSTSTTPLLTSAHPTG 626
Score = 36.7 bits (84), Expect = 0.035
Identities = 28/158 (17%), Positives = 44/158 (27%), Gaps = 2/158 (1%)
Query: 360 SKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPA 419
+ + T T +SP T + P P+ + + PT TT
Sbjct: 492 TTSATPNATSPTPAVTTPNATSPTTQKTSDTPNATSPTPIVIGVTTTAT--SPPTGTTSV 549
Query: 420 PVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPG 479
P +T + SPV T S S +P + P + TP
Sbjct: 550 PNATSPQVTEESPVNNTNTPVVTSAPSVLTSAVTTGQHGTGSSPTSQQPGIPSSSHSTPR 609
Query: 480 APEPVPSPAAPAPVETPSVPAEPTPTASPVQTSQPCAS 517
+ +P + T + P T S
Sbjct: 610 SNSTSTTPLLTSAHPTGGENITEETPSVPSTTHVSTLS 647
Score = 35.5 bits (81), Expect = 0.070
Identities = 35/155 (22%), Positives = 53/155 (34%), Gaps = 2/155 (1%)
Query: 353 ISQTIEPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVAT 412
I T + PP S + S + E SP S V S V ++
Sbjct: 533 IGVTTTATSPPTGTTSVPNATSPQVTEESPVNNTNTPVVTSAPSVLTSAVTTGQHGTGSS 592
Query: 413 PTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPP 472
PT P S+ T ++ + P T+ + + E P+ P T V+ ++ P
Sbjct: 593 PTSQQPGIPSSSHSTPRSNSTST-TPLLTSAHPTGGENITEETPSVPSTTHVSTLSPGPG 651
Query: 473 TPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTAS 507
P T P S + P E P P A+
Sbjct: 652 -PGTTSQVSGPGNSSTSRYPGEVHVTEGMPNPNAT 685
Score = 28.6 bits (63), Expect = 9.6
Identities = 28/129 (21%), Positives = 41/129 (31%), Gaps = 3/129 (2%)
Query: 365 AEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVP-APSTPPVATPTETTPAPVST 423
TTS+ + SS P P P + P APS A PT T+ +
Sbjct: 649 GPGPGTTSQVSGPGNSSTSRYPGEVHVTEGMPNPNATSPSAPSGQKTAVPTVTSTGGKAN 708
Query: 424 P--TETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAP 481
ET+ ++ +A+ P + + P + P T A
Sbjct: 709 STTKETSGSTLMASTSPHTNEGAFRTTPYNATTYLPPSTSSKLRPRWTFTSPPVTTKQAT 768
Query: 482 EPVPSPAAP 490
PVP P
Sbjct: 769 VPVPPTQHP 777
>gnl|CDD|236768 PRK10819, PRK10819, transport protein TonB; Provisional.
Length = 246
Score = 46.2 bits (110), Expect = 1e-05
Identities = 36/129 (27%), Positives = 44/129 (34%), Gaps = 9/129 (6%)
Query: 377 KKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAP 436
+ P +V V PA P V P P P P E P P+ P + A PV P
Sbjct: 42 PAPAQPISVTMVAPADLEPPQAVQPPPEPVVEP-----EPEPEPIPEPPKEA---PVVIP 93
Query: 437 VPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPA-PVET 495
P P + PV+ V PV P +P E P S A A
Sbjct: 94 KPEPKPKPKPKPKPKPVKKVEEQPKREVKPVEPRPASPFENTAPARPTSSTATAAASKPV 153
Query: 496 PSVPAEPTP 504
SV + P
Sbjct: 154 TSVSSGPRA 162
Score = 37.7 bits (88), Expect = 0.009
Identities = 23/67 (34%), Positives = 28/67 (41%), Gaps = 2/67 (2%)
Query: 444 VESPAASTPVE-APAAPVDTPVTPVASAPPTPAETPGA-PEPVPSPAAPAPVETPSVPAE 501
+E PA + P+ AP D PP P P PEP+P P APV P +
Sbjct: 39 IELPAPAQPISVTMVAPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIPKPEPK 98
Query: 502 PTPTASP 508
P P P
Sbjct: 99 PKPKPKP 105
Score = 37.0 bits (86), Expect = 0.017
Identities = 30/118 (25%), Positives = 40/118 (33%), Gaps = 10/118 (8%)
Query: 357 IEPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTET 416
+ P+ + Q E + E P +PE A PV + P P P P P
Sbjct: 53 VAPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEA---PVVI-PKPEPKPKPKPKP--- 105
Query: 417 TPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTP 474
P PV E V P P +P E+ A + P + PV S P
Sbjct: 106 KPKPVKK-VEEQPKREVKPVEPRPASPFENTAPARPT--SSTATAAASKPVTSVSSGP 160
>gnl|CDD|234368 TIGR03835, termin_org_DnaJ, terminal organelle assembly protein
TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ
homolog and probable assembly protein of the Mycoplasma
terminal organelle. The terminal organelle is involved
in both cytadherence and gliding motility [Cellular
processes, Chemotaxis and motility].
Length = 871
Score = 47.5 bits (112), Expect = 1e-05
Identities = 29/172 (16%), Positives = 50/172 (29%), Gaps = 10/172 (5%)
Query: 334 EEGHIDYLGKDSWDNIWKKISQTIEPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAAS 393
+ G+ D G+ W + + + + + S+ + + S PT+ P
Sbjct: 212 DYGYFDENGEWIWKGYFDEDGNWVWTRELEPQDDSEDDYVIPDAEIISSPTLEVTAPKEV 271
Query: 394 VEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAP---VPSPTTPVESPAAS 450
+P+ PV T ET PT+T P +AP V + P +
Sbjct: 272 EQPLQPEPVD------EETVAETKAEEEPQPTQTVETKPTSAPESTVEENLPEINQPTQA 325
Query: 451 TPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEP 502
+ TPV P P + + T
Sbjct: 326 VQPTS-ETISTTPVEPTDQLKPKEVDQIQEELKKTKEIEVEELPTKKNDLVE 376
Score = 32.5 bits (73), Expect = 0.68
Identities = 32/128 (25%), Positives = 44/128 (34%), Gaps = 19/128 (14%)
Query: 376 EKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAA 435
E + V P A + P V AP V P + P T ET A
Sbjct: 239 ELEPQDDSEDDYVIPDAEIISSPTLEVTAPKE--VEQPLQPEPVDEETVAETKAE----- 291
Query: 436 PVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVET 495
P PT VE + P AP + V+ + P + A +P + PVE
Sbjct: 292 EEPQPTQTVE----TKPTSAPESTVEENL-------PEINQPTQAVQPTSETISTTPVE- 339
Query: 496 PSVPAEPT 503
P+ +P
Sbjct: 340 PTDQLKPK 347
>gnl|CDD|237081 PRK12372, PRK12372, ribonuclease III; Reviewed.
Length = 413
Score = 46.4 bits (110), Expect = 2e-05
Identities = 29/137 (21%), Positives = 40/137 (29%), Gaps = 6/137 (4%)
Query: 376 EKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASP--- 432
K+ ++ A + +P P+ P+A + E AA
Sbjct: 265 RKERAAAREARAAAAAPAATAAAAAPAEEPAVAPMAAIRAAHVETAADKGERAAKPAAAD 324
Query: 433 VAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAP 492
AA P+ AA P EA D P A + A+ PGA AA P
Sbjct: 325 KAADKPADRPDAAEKAAEKPAEAAPRAADKPAGQAADPASSSADKPGA---SADAAARTP 381
Query: 493 VETPSVPAEPTPTASPV 509
A T
Sbjct: 382 ARARDAAAPDADTPPGG 398
Score = 34.5 bits (79), Expect = 0.13
Identities = 27/133 (20%), Positives = 38/133 (28%), Gaps = 11/133 (8%)
Query: 386 PEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVE 445
PE K A+ + +T A P E P P A+ V +
Sbjct: 263 PERKERAAAREARAAAAAPAATAAAAAPAE---EPAVAPMAAIRAAHVETAADKGERAAK 319
Query: 446 SPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPT 505
AA + PA D A AE P P + P+ + P
Sbjct: 320 PAAADKAADKPADRPD--------AAEKAAEKPAEAAPRAADKPAGQAADPASSSADKPG 371
Query: 506 ASPVQTSQPCAST 518
AS ++ A
Sbjct: 372 ASADAAARTPARA 384
Score = 33.7 bits (77), Expect = 0.23
Identities = 29/142 (20%), Positives = 42/142 (29%), Gaps = 13/142 (9%)
Query: 359 PSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVP-------VSPVPAPSTPPVA 411
++ AA P+ T + + +E + + ++ AA VE + A
Sbjct: 273 EARAAAAAPAATAAAAAPAEEPAVAPMAAIR-AAHVETAADKGERAAKPAAADKAADKPA 331
Query: 412 TPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAP 471
+ P E AA P P S A A A A
Sbjct: 332 DRPDAAEKAAEKPAE-AAPRAADKPAGQAADPASSSADKP--GASADAAARTPARARDAA 388
Query: 472 PTPAETPGAPEPVPSPAAPAPV 493
A+TP P AA A V
Sbjct: 389 APDADTP--PGGASLAAAQARV 408
>gnl|CDD|223066 PHA03379, PHA03379, EBNA-3A; Provisional.
Length = 935
Score = 47.0 bits (111), Expect = 2e-05
Identities = 41/144 (28%), Positives = 54/144 (37%), Gaps = 26/144 (18%)
Query: 361 KPPAAEPSQTTSESTEKK-ESSPPTVPEVKPAASVEPVPV------SPVPAPSTPPV--- 410
+PP +P +S E VPE P +EP P+ +P P PP
Sbjct: 417 RPPVEKPRPEVPQSLETATSHGSAQVPEPPPVHDLEPGPLHDQHSMAPCPVAQLPPGPLQ 476
Query: 411 -ATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVAS 469
P + P V P APVP+P P+ P ++ + P VA
Sbjct: 477 DLEPGDQLPGVVQDG------RPACAPVPAPAGPIVRPWEASLSQVPG---------VAF 521
Query: 470 APPTPAETPGAPEPVPSPAAPAPV 493
AP P P P PVP+ A PV
Sbjct: 522 APVMPQPMPVEPVPVPTVALERPV 545
Score = 35.0 bits (80), Expect = 0.12
Identities = 31/126 (24%), Positives = 40/126 (31%), Gaps = 9/126 (7%)
Query: 389 KPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPA 448
K + P PV P P V ET A + PV P P S A
Sbjct: 407 KASEPTYGTPRPPVEKPR-PEVPQSLET--ATSHGSAQVPEPPPVHDLEPGPLHDQHSMA 463
Query: 449 ASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASP 508
+ P P+ + P P + A PVP+PA P P E + + P
Sbjct: 464 PCPVAQLPPGPLQ-DLEPGDQLPGVVQDGRPACAPVPAPAGPI-----VRPWEASLSQVP 517
Query: 509 VQTSQP 514
P
Sbjct: 518 GVAFAP 523
Score = 29.6 bits (66), Expect = 5.0
Identities = 31/161 (19%), Positives = 42/161 (26%), Gaps = 10/161 (6%)
Query: 357 IEPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTET 416
+EP P + + P P P P P
Sbjct: 531 VEPVPVPTVALERPVCPAPPLIAMQGPGETSGIVRVRERWRPAPWTPNPPRSPSQMSVRD 590
Query: 417 TPAPVSTP----TETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPP 472
A + + P SP P+E P P +P + V V A
Sbjct: 591 RLARLRAEAQPYQASVEVQPPQLTQVSPQQPMEYPLEPEQQMFPGSPF-SQVADVMRAGG 649
Query: 473 TPAETPGA-----PEPVPSPAAPAPVETPSVPAEPTPTASP 508
PA P +P+ A AP+ P P P P
Sbjct: 650 VPAMQPQYFDLPLQQPISQGAPLAPLRASMGPVPPVPATQP 690
>gnl|CDD|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase;
Provisional.
Length = 418
Score = 45.8 bits (109), Expect = 3e-05
Identities = 21/74 (28%), Positives = 24/74 (32%)
Query: 441 TTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPA 500
T AA A A TP P A+AP P P + P P P
Sbjct: 120 TGGAPPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPAPAAKPPP 179
Query: 501 EPTPTASPVQTSQP 514
P A P +T P
Sbjct: 180 TPVARADPRETRVP 193
Score = 45.4 bits (108), Expect = 5e-05
Identities = 24/89 (26%), Positives = 28/89 (31%), Gaps = 5/89 (5%)
Query: 426 ETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVP 485
E V AP+ T PAA A AA TP P P A
Sbjct: 104 EEGDTVEVGAPLSEIDTGGAPPAA--APAAAAAAKAEKTTPEKPKAAAPTPEPPAA---S 158
Query: 486 SPAAPAPVETPSVPAEPTPTASPVQTSQP 514
P PA + P P +PV + P
Sbjct: 159 KPTPPAAAKPPEPAPAAKPPPTPVARADP 187
Score = 41.2 bits (97), Expect = 0.001
Identities = 27/90 (30%), Positives = 32/90 (35%), Gaps = 9/90 (10%)
Query: 384 TVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTP 443
TV P + ++ P AP+ A P P AA P+P
Sbjct: 108 TVEVGAPLSEIDTGGAPPAAAPAAA--AAAKAEKTTPEKPKAAAPTPEPPAASKPTP--- 162
Query: 444 VESPAASTPVEAPAAPVDTPVTPVASAPPT 473
AA P APAA P TPVA A P
Sbjct: 163 --PAAAKPPEPAPAAK--PPPTPVARADPR 188
Score = 40.4 bits (95), Expect = 0.002
Identities = 18/63 (28%), Positives = 23/63 (36%), Gaps = 4/63 (6%)
Query: 358 EPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVAT----P 413
P+ AA+ +TT E + +P KP P P PA PP P
Sbjct: 128 APAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPAPAAKPPPTPVARADP 187
Query: 414 TET 416
ET
Sbjct: 188 RET 190
Score = 39.3 bits (92), Expect = 0.004
Identities = 26/76 (34%), Positives = 29/76 (38%), Gaps = 6/76 (7%)
Query: 424 PTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEP 483
P A A+ AA T AA TP E PAA P A P E A +P
Sbjct: 124 PPAAAPAAAAAAKAEKTTPEKPKAAAPTP-EPPAAS-----KPTPPAAAKPPEPAPAAKP 177
Query: 484 VPSPAAPAPVETPSVP 499
P+P A A VP
Sbjct: 178 PPTPVARADPRETRVP 193
Score = 38.1 bits (89), Expect = 0.009
Identities = 20/58 (34%), Positives = 20/58 (34%), Gaps = 2/58 (3%)
Query: 382 PPTVPEVKPAASVE-PVPVSPVPAPSTPP-VATPTETTPAPVSTPTETAAASPVAAPV 437
P P AA E P P A TP A T PA P AA P PV
Sbjct: 125 PAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPAPAAKPPPTPV 182
Score = 37.4 bits (87), Expect = 0.015
Identities = 26/111 (23%), Positives = 34/111 (30%), Gaps = 15/111 (13%)
Query: 328 IHRQHWEEGHIDYLGKDSWDNIWKKISQTIEPSKPPAAEPSQTTSESTEKKESSPPTVPE 387
I + EEG +G + I P A + +E T ++
Sbjct: 98 ITKIFAEEGDTVEVGAPLSE-----IDTGGAPPAAAPAAAAAAKAEKTTPEKPKAAAPTP 152
Query: 388 VKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVP 438
PAAS P P + P PA PT A A P VP
Sbjct: 153 EPPAAS------KPTPPAAAKPPEPA----PAAKPPPTPVARADPRETRVP 193
Score = 35.0 bits (81), Expect = 0.094
Identities = 15/71 (21%), Positives = 19/71 (26%), Gaps = 3/71 (4%)
Query: 416 TTPAPVSTPTETAAASPVAAPVPS--PTTPVESPAASTPVEAPAAPVDTPVTPVASAPPT 473
T AP + AAA+ P + P A P P +A P
Sbjct: 120 TGGAPPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAA-KPPEPAPAAKPP 178
Query: 474 PAETPGAPEPV 484
P A
Sbjct: 179 PTPVARADPRE 189
Score = 33.9 bits (78), Expect = 0.19
Identities = 15/68 (22%), Positives = 22/68 (32%), Gaps = 1/68 (1%)
Query: 388 VKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAAS-PVAAPVPSPTTPVES 446
P A+ + +TP TP P + T A+ P P+ P
Sbjct: 122 GAPPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPAPAAKPPPTP 181
Query: 447 PAASTPVE 454
A + P E
Sbjct: 182 VARADPRE 189
>gnl|CDD|183756 PRK12799, motB, flagellar motor protein MotB; Reviewed.
Length = 421
Score = 45.9 bits (108), Expect = 3e-05
Identities = 27/125 (21%), Positives = 44/125 (35%), Gaps = 5/125 (4%)
Query: 389 KPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPA 448
P A+ P S V S ++ +PA + + T +A+ A + ++ P+
Sbjct: 299 VPVAA--VTPSSAVTQSSAITPSSAAIPSPAVIPSSVTTQSATTTQASAVALSSAGVLPS 356
Query: 449 ASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASP 508
T A P PV T + + + A P T S+PA P
Sbjct: 357 DVTLPGTVALPAAEPVNMQPQPMSTTETQQSSTGNI-TSTANGP--TTSLPAAPASNIPV 413
Query: 509 VQTSQ 513
TS+
Sbjct: 414 SPTSR 418
Score = 41.6 bits (97), Expect = 7e-04
Identities = 32/130 (24%), Positives = 44/130 (33%), Gaps = 8/130 (6%)
Query: 369 QTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETA 428
Q + T + P+ + +A P PA V T + T
Sbjct: 292 QIDTHGTVPVAAVTPSSAVTQSSAITPSSAAIPSPAVIPSSVTTQSAT---TTQASAVAL 348
Query: 429 AASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPS-P 487
+++ V + V PAA PV P+ T T +S T T A P S P
Sbjct: 349 SSAGVLPSDVTLPGTVALPAAE-PVNMQPQPMSTTETQQSS---TGNITSTANGPTTSLP 404
Query: 488 AAPAPVETPS 497
AAPA S
Sbjct: 405 AAPASNIPVS 414
Score = 38.5 bits (89), Expect = 0.007
Identities = 25/110 (22%), Positives = 40/110 (36%), Gaps = 1/110 (0%)
Query: 407 TPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTP 466
T PVA T ++ S+ ++A+ + +P P++ A +T A A +
Sbjct: 298 TVPVAAVTPSSAVTQSSAITPSSAA-IPSPAVIPSSVTTQSATTTQASAVALSSAGVLPS 356
Query: 467 VASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQTSQPCA 516
+ P T A P + S T TA+ TS P A
Sbjct: 357 DVTLPGTVALPAAEPVNMQPQPMSTTETQQSSTGNITSTANGPTTSLPAA 406
Score = 36.6 bits (84), Expect = 0.025
Identities = 26/150 (17%), Positives = 44/150 (29%), Gaps = 3/150 (2%)
Query: 325 EDHIHRQHWEEGHIDYLGKDSWDNIWKKISQTIEPSKPPAAEPSQTTSESTEKKESSPPT 384
+ I ++ + +D I + + P +A + + SP
Sbjct: 269 QHDIEHENLDNRALDIEKATGLKQIDTHGTVPVAAVTPSSAVTQSSAITPSSAAIPSPAV 328
Query: 385 VPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPV 444
+P S S V S V T P V+ P + P+ + T
Sbjct: 329 IPSSVTTQSATTTQASAVALSSAG-VLPSDVTLPGTVALPA-AEPVNMQPQPMSTTETQQ 386
Query: 445 ESPAASTPVEAPAAPVDTPVTPVASAPPTP 474
S T A P P ++ P +P
Sbjct: 387 SSTGNITST-ANGPTTSLPAAPASNIPVSP 415
Score = 33.9 bits (77), Expect = 0.20
Identities = 20/86 (23%), Positives = 35/86 (40%), Gaps = 2/86 (2%)
Query: 359 PSKPPAAEPSQ--TTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTET 416
+A +Q + S+ S T+P + EPV + P P +T + T
Sbjct: 332 SVTTQSATTTQASAVALSSAGVLPSDVTLPGTVALPAAEPVNMQPQPMSTTETQQSSTGN 391
Query: 417 TPAPVSTPTETAAASPVAAPVPSPTT 442
+ + PT + A+P + SPT+
Sbjct: 392 ITSTANGPTTSLPAAPASNIPVSPTS 417
Score = 31.6 bits (71), Expect = 1.0
Identities = 20/84 (23%), Positives = 28/84 (33%), Gaps = 6/84 (7%)
Query: 441 TTPVESPAASTPVEAPAA-PVDTPVTPVASAPPTPAETPGA-PEPVPSPAAPAPVETPSV 498
T PV + S+ V +A + P + P+ T A + A + PS
Sbjct: 298 TVPVAAVTPSSAVTQSSAITPSSAAIPSPAVIPSSVTTQSATTTQASAVALSSAGVLPSD 357
Query: 499 PAEPT----PTASPVQTSQPCAST 518
P P A PV ST
Sbjct: 358 VTLPGTVALPAAEPVNMQPQPMST 381
>gnl|CDD|217310 pfam02993, MCPVI, Minor capsid protein VI. This minor capsid
protein may act as a link between the external capsid
and the internal DNA-protein core. The C-terminal 11
residues may function as a protease cofactor leading to
enzyme activation.
Length = 238
Score = 44.8 bits (106), Expect = 4e-05
Identities = 30/128 (23%), Positives = 40/128 (31%), Gaps = 22/128 (17%)
Query: 351 KKISQTIEPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPV 410
K + + +E EP+ E+ + P + +P VE V V P P +
Sbjct: 100 KDLEKLLEK-VLGEEEPA-----PQEETVADPIQALQPRPRPDVEEVLVPAAPEPPSYEE 153
Query: 411 ATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASA 470
+PV PV S V PA TPV P P PV
Sbjct: 154 TIKP--------------GPAPVEEPVDSMAIAV--PAIDTPVTLELPPAPQPPPPVVPQ 197
Query: 471 PPTPAETP 478
P T
Sbjct: 198 PSTMVVHR 205
Score = 44.0 bits (104), Expect = 8e-05
Identities = 21/97 (21%), Positives = 25/97 (25%), Gaps = 1/97 (1%)
Query: 418 PAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAET 477
P E A P+ A P P VE E P+ P P +
Sbjct: 111 GEEEPAPQEETVADPIQALQPRPRPDVEEVLVPAAPEPPSYEETIKPGPAPVEEPVDSMA 170
Query: 478 PGAPEP-VPSPAAPAPVETPSVPAEPTPTASPVQTSQ 513
P P P P P P P+ V
Sbjct: 171 IAVPAIDTPVTLELPPAPQPPPPVVPQPSTMVVHRRS 207
Score = 37.9 bits (88), Expect = 0.008
Identities = 29/108 (26%), Positives = 36/108 (33%), Gaps = 8/108 (7%)
Query: 403 PAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDT 462
A ET P+ P V P P E P+ ++ APV+
Sbjct: 108 KVLGEEEPAPQEETVADPIQA--LQPRPRPDVEEVLVPAAP-EPPSYEETIKPGPAPVEE 164
Query: 463 PVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQ 510
PV +A A P TP E P+P P P P VP T
Sbjct: 165 PVDSMAIAVPAID-TPVTLELPPAP-QPPP---PVVPQPSTMVVHRRS 207
Score = 35.5 bits (82), Expect = 0.039
Identities = 30/107 (28%), Positives = 34/107 (31%), Gaps = 9/107 (8%)
Query: 395 EPVPVSPVPAPSTPPVATPTET-TPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPV 453
E V PAP VA P + P P E + P T PV
Sbjct: 107 EKVLGEEEPAPQEETVADPIQALQPRPRPDVEEVLVPAAPEPPSYEETIKPGPAPVEEPV 166
Query: 454 EAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPA 500
++ A V TPV P PA P P P P P T V
Sbjct: 167 DSMAIAVPAIDTPVTLELP-PAPQP------PPPVVPQP-STMVVHR 205
Score = 34.0 bits (78), Expect = 0.13
Identities = 25/87 (28%), Positives = 29/87 (33%), Gaps = 6/87 (6%)
Query: 437 VPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAET--PGAP---EPVPSPAAPA 491
V P + P V+ + P A PP+ ET PG EPV S A
Sbjct: 115 PAPQEETVADPIQALQP-RPRPDVEEVLVPAAPEPPSYEETIKPGPAPVEEPVDSMAIAV 173
Query: 492 PVETPSVPAEPTPTASPVQTSQPCAST 518
P V E P P P ST
Sbjct: 174 PAIDTPVTLELPPAPQPPPPVVPQPST 200
Score = 32.1 bits (73), Expect = 0.60
Identities = 18/84 (21%), Positives = 21/84 (25%), Gaps = 6/84 (7%)
Query: 436 PVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAP-APVE 494
P E+ A P P P P E P E + AP
Sbjct: 111 GEEEPAPQEETVAD---PIQALQPRPRPDVEEVLVPAAP-EPPSYEETIKPGPAPVEEPV 166
Query: 495 TPSVPAEPTPTASPVQTSQPCAST 518
A P +PV P A
Sbjct: 167 DSMAIAVPAI-DTPVTLELPPAPQ 189
Score = 29.4 bits (66), Expect = 3.9
Identities = 19/88 (21%), Positives = 24/88 (27%), Gaps = 8/88 (9%)
Query: 354 SQTIEPSKPPAAEPSQTTSESTEKKESSPPTVPEVKP-AASVEPVPVSPVPAPSTPPVAT 412
Q ++P P E + P +KP A VE S A P + T
Sbjct: 126 IQALQPRPRPDVEEVLVPAAP-----EPPSYEETIKPGPAPVEEPVDSMAIA--VPAIDT 178
Query: 413 PTETTPAPVSTPTETAAASPVAAPVPSP 440
P P P P V
Sbjct: 179 PVTLELPPAPQPPPPVVPQPSTMVVHRR 206
>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional.
Length = 1355
Score = 45.8 bits (108), Expect = 5e-05
Identities = 38/161 (23%), Positives = 47/161 (29%), Gaps = 13/161 (8%)
Query: 364 AAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTP-PVATPTET--TPAP 420
A +Q+ + E +PP V V + V PVP P T PV P
Sbjct: 326 ATTATQSWAAPVEPVTQTPP-VASVDVPPAQPTVAWQPVPGPQTGEPVIAPAPEGYPQQS 384
Query: 421 VSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAET--- 477
P+ PV P P +PAA P + P P P PA
Sbjct: 385 QYAQPAVQYNEPLQQPVQ-PQQPYYAPAAEQPAQQPYY-APAPEQPAQQPYYAPAPEQPV 442
Query: 478 ---PGAPEPVPSPAAPAPVETPSVP-AEPTPTASPVQTSQP 514
E S AP +P Q QP
Sbjct: 443 AGNAWQAEEQQSTFAPQSTYQTEQTYQQPAAQEPLYQQPQP 483
Score = 44.3 bits (104), Expect = 2e-04
Identities = 30/179 (16%), Positives = 40/179 (22%), Gaps = 17/179 (9%)
Query: 354 SQTIEPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATP 413
+Q P +P Q P P PA PAP P
Sbjct: 387 AQPAVQYNEPLQQPVQPQQPYYAPAAEQPAQQPYYAPAPEQPAQQPYYAPAPEQPVAGNA 446
Query: 414 TETTPA-PVSTPTETAA-ASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAP 471
+ P T P + PV P + P
Sbjct: 447 WQAEEQQSTFAPQSTYQTEQTYQQPAAQEPLYQQPQPVEQQPVVEPEPVVEETKP--ARP 504
Query: 472 P----TPAETPGAPE---------PVPSPAAPAPVETPSVPAEPTPTASPVQTSQPCAS 517
P E A E P+P P S+ A PV+ + +
Sbjct: 505 PLYYFEEVEEKRAREREQLAAWYQPIPEPVKEPEPIKSSLKAPSVAAVPPVEAAAAVSP 563
Score = 43.9 bits (103), Expect = 2e-04
Identities = 46/208 (22%), Positives = 70/208 (33%), Gaps = 10/208 (4%)
Query: 319 AEQLAYEDHIHRQHWEEGHIDYLGKDSWDNIWKKISQTIEPSKPPAAEPSQTTSESTEKK 378
A+Q Y + + + + N W+ Q + + QT + ++
Sbjct: 416 AQQPYYAPAPEQPAQQPYYAPAPEQPVAGNAWQAEEQQSTFAPQSTYQTEQTYQQPAAQE 475
Query: 379 ESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAA-ASPVAAPV 437
V+ VEP PV P+ PP+ E + AA P+ PV
Sbjct: 476 PLYQQP-QPVEQQPVVEPEPVVEETKPARPPLYYFEEVEEKRAREREQLAAWYQPIPEPV 534
Query: 438 PSP-----TTPVESPAASTPVEAPA--APVDTPVTPVASAPPTPAETPGAPEPVPSPAAP 490
P + S AA PVEA A +P+ + V A A + + P
Sbjct: 535 KEPEPIKSSLKAPSVAAVPPVEAAAAVSPLASGVKKATLATGAAATVAAPVFSLANSGGP 594
Query: 491 AP-VETPSVPAEPTPTASPVQTSQPCAS 517
P V+ P P P V T + AS
Sbjct: 595 RPQVKEGIGPQLPRPKRIRVPTRRELAS 622
Score = 37.8 bits (87), Expect = 0.017
Identities = 29/82 (35%), Positives = 38/82 (46%), Gaps = 6/82 (7%)
Query: 439 SPTTPVESPAASTPV-EAPAAPVD--TPVTPVASAPPTPAETPGAPEPVPSPAAPAPVET 495
T PV AA+T ++ AAPV+ T PVAS PA+ A +PVP P PV
Sbjct: 315 PITEPVAVAAAATTATQSWAAPVEPVTQTPPVASVDVPPAQPTVAWQPVPGPQTGEPVIA 374
Query: 496 P---SVPAEPTPTASPVQTSQP 514
P P + VQ ++P
Sbjct: 375 PAPEGYPQQSQYAQPAVQYNEP 396
Score = 34.7 bits (79), Expect = 0.13
Identities = 28/111 (25%), Positives = 40/111 (36%), Gaps = 8/111 (7%)
Query: 404 APSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTP 463
AP T PVA A +T + A+PV +P + P A PV P
Sbjct: 314 APITEPVAV------AAAATTATQSWAAPVEPVTQTPPVASVDVPPAQPTVA-WQPVPGP 366
Query: 464 VTPVASAPPTPAETPGAPEPV-PSPAAPAPVETPSVPAEPTPTASPVQTSQ 513
T P P P + P+ P++ P P +P + Q +Q
Sbjct: 367 QTGEPVIAPAPEGYPQQSQYAQPAVQYNEPLQQPVQPQQPYYAPAAEQPAQ 417
Score = 34.3 bits (78), Expect = 0.17
Identities = 37/143 (25%), Positives = 45/143 (31%), Gaps = 15/143 (10%)
Query: 380 SSPPTVPEVKP----AASVEPVPVSPVPAPSTPPVATPTE-TTPAPVSTPTETAAASPVA 434
++ P E P A EPV V+ +T A P E T P + A P
Sbjct: 299 ATQPEYDEYDPLLNGAPITEPVAVAAAATTATQSWAAPVEPVTQTPPVASVDVPPAQPTV 358
Query: 435 A--PVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAP-EPVPSPAAPA 491
A PVP P T PV APA + A E P +P APA
Sbjct: 359 AWQPVPGPQTG-------EPVIAPAPEGYPQQSQYAQPAVQYNEPLQQPVQPQQPYYAPA 411
Query: 492 PVETPSVPAEPTPTASPVQTSQP 514
+ P P Q
Sbjct: 412 AEQPAQQPYYAPAPEQPAQQPYY 434
Score = 33.5 bits (76), Expect = 0.32
Identities = 29/118 (24%), Positives = 45/118 (38%), Gaps = 10/118 (8%)
Query: 355 QTIEPSKPPA--AEPSQTTSESTEKKESSPPTVPEVKPAASVEPV-PVSPVPAPSTPPVA 411
Q +P P +P Q + + ++ P P+ + +PV P P P
Sbjct: 767 QPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAP 826
Query: 412 TPTETTP-APVSTPTETAAASPV------AAPVPSPTTPVESPAASTPVEAPAAPVDT 462
P P PV+ + P+ + P+ PTTP+ S TP + PVDT
Sbjct: 827 QPQYQQPQQPVAPQPQDTLLHPLLMRNGDSRPLHKPTTPLPSLDLLTPPPSEVEPVDT 884
Score = 32.4 bits (73), Expect = 0.83
Identities = 32/144 (22%), Positives = 49/144 (34%), Gaps = 13/144 (9%)
Query: 359 PSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSP-VPAPSTPPVATPTETT 417
P P +P Q + + ++ P P+ + +PV P P P P
Sbjct: 747 PIVEPVQQPQQPVAPQQQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQ 806
Query: 418 P-APVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAE 476
P PV+ + AP P P + P A P + P+ + + P
Sbjct: 807 PQQPVAPQPQYQQPQQPVAPQPQYQQP-QQPVAPQPQDTLLHPL-----LMRNGDSRPLH 860
Query: 477 TPGAPEP-----VPSPAAPAPVET 495
P P P P P+ PV+T
Sbjct: 861 KPTTPLPSLDLLTPPPSEVEPVDT 884
Score = 32.0 bits (72), Expect = 0.88
Identities = 26/126 (20%), Positives = 32/126 (25%), Gaps = 9/126 (7%)
Query: 383 PTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTT 442
P P P P PV P + A P P
Sbjct: 740 PHEPLFTPIVEPVQQPQQPVAPQQQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVA 799
Query: 443 PVESPAASTPVEAPAAPVDTPVTPVASAPP-TPAETPGAPEPVPSPAAP--------APV 493
P AP P PVA P + P AP+P + P P+
Sbjct: 800 PQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQDTLLHPLLMRNGDSRPL 859
Query: 494 ETPSVP 499
P+ P
Sbjct: 860 HKPTTP 865
Score = 29.3 bits (65), Expect = 6.7
Identities = 21/107 (19%), Positives = 27/107 (25%), Gaps = 14/107 (13%)
Query: 415 ETTPAPVSTPTETAAASPVAAPVPSPTT-----PVESPAASTPVEAPAAPVDTPVTPVAS 469
+ P+ TP P P PV + P AP P
Sbjct: 738 DGPHEPLFTPIVEPVQQPQQPVAPQQQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQP 797
Query: 470 APPTP---------AETPGAPEPVPSPAAPAPVETPSVPAEPTPTAS 507
P P A P +P A + P P P P +
Sbjct: 798 VAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQDT 844
>gnl|CDD|200219 TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogenase, E2 component,
dihydrolipoamide succinyltransferase. This model
represents an Actinobacterial clade of E2 enzyme, a
component of the 2-oxoglutarate dehydrogenase complex
involved in the TCA cycle. These proteins have multiple
domains including the catalytic domain (pfam00198), one
or two biotin domains (pfam00364) and an E3-component
binding domain (pfam02817).
Length = 579
Score = 45.8 bits (108), Expect = 5e-05
Identities = 44/187 (23%), Positives = 58/187 (31%), Gaps = 36/187 (19%)
Query: 366 EPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPT 425
EP + SE P PE A + P P + PAP+ P E T +
Sbjct: 78 EPGEAGSEPAPAA-PEPEAAPE-PEAPAPAPTPAAEAPAPAAPQAGGSGEATEVKMPELG 135
Query: 426 ETAAASPVAA---------PVPSPT---------TPVESPAASTPVEAPAAPVDT----- 462
E+ V + V P T + SP A T +E A DT
Sbjct: 136 ESVTEGTVTSWLKAVGDTVEVDEPLLEVSTDKVDTEIPSPVAGTLLEIRAPEDDTVEVGT 195
Query: 463 -----------PVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQT 511
P P P P+E P P P+ AP P PA +
Sbjct: 196 VLAIIGDANAAPAEPAEEEAPAPSEAGSEPAPDPAARAPHAAPDPPAPAPAPAKTAAPAA 255
Query: 512 SQPCAST 518
+ P +S
Sbjct: 256 AAPVSSG 262
Score = 38.8 bits (90), Expect = 0.006
Identities = 31/132 (23%), Positives = 42/132 (31%), Gaps = 2/132 (1%)
Query: 381 SPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSP 440
+ P E + P +P PA P A + AAA+PV++ P
Sbjct: 208 AEPAEEEAPAPSEAGSEP-APDPAARAPHAAPDPPAPAPAPAKTAAPAAAAPVSSGDSGP 266
Query: 441 -TTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVP 499
TP+ A + T V A A E + AAPA P+ P
Sbjct: 267 YVTPLVRKLAKDKGVDLSTVKGTGVGGRIRKQDVLAAAKAAEEARAAAAAPAAAAAPAAP 326
Query: 500 AEPTPTASPVQT 511
A A P
Sbjct: 327 AAAAKPAEPDTA 338
Score = 33.4 bits (76), Expect = 0.30
Identities = 22/77 (28%), Positives = 28/77 (36%), Gaps = 9/77 (11%)
Query: 428 AAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSP 487
A A+P P E+ + P A AP +AP PA P + P
Sbjct: 203 ANAAPAEPAEEEAPAPSEAGSEPAPDPAARAP--------HAAPDPPAPAPAPAKTAA-P 253
Query: 488 AAPAPVETPSVPAEPTP 504
AA APV + TP
Sbjct: 254 AAAAPVSSGDSGPYVTP 270
Score = 32.7 bits (74), Expect = 0.60
Identities = 26/132 (19%), Positives = 35/132 (26%), Gaps = 19/132 (14%)
Query: 358 EPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPS-------TPPV 410
E P A + ++P A P + P S TP V
Sbjct: 214 EAPAPSEAGSEPAPDPAARAPHAAPDPPAPAPAPAKTAA-PAAAAPVSSGDSGPYVTPLV 272
Query: 411 ATPTETTPAPVSTPTETAAA-----SPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVT 465
+ +ST T V A + + AA APAAP
Sbjct: 273 RKLAKDKGVDLSTVKGTGVGGRIRKQDVLAAAKAAEEARAAAAAPAAAAAPAAPA----- 327
Query: 466 PVASAPPTPAET 477
A+ P P
Sbjct: 328 -AAAKPAEPDTA 338
Score = 32.3 bits (73), Expect = 0.78
Identities = 34/149 (22%), Positives = 44/149 (29%), Gaps = 11/149 (7%)
Query: 352 KISQTIEPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVA 411
I PA E + SE+ E +P AA P P + P
Sbjct: 199 IIGDANAAPAEPAEEEAPAPSEA--GSEPAPDPAARAPHAAPDPPAPAPAPAKTAAP--- 253
Query: 412 TPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAP 471
APVS+ +P+ + S T V D V A A
Sbjct: 254 ----AAAAPVSSGDSGPYVTPLVRKLAKDKGVDLSTVKGTGVGGRIRKQD--VLAAAKAA 307
Query: 472 PTPAETPGAPEPVPSPAAPAPVETPSVPA 500
AP +PAAPA P+ P
Sbjct: 308 EEARAAAAAPAAAAAPAAPAAAAKPAEPD 336
>gnl|CDD|185628 PTZ00449, PTZ00449, 104 kDa microneme/rhoptry antigen; Provisional.
Length = 943
Score = 45.5 bits (107), Expect = 6e-05
Identities = 37/157 (23%), Positives = 51/157 (32%), Gaps = 12/157 (7%)
Query: 358 EPSKPPAAEPSQTTSESTEK---KESSPPTVPEVKPAASVEPVPVSPVPA----PSTPPV 410
E S P P E E KES P V P PA PS P
Sbjct: 515 EASGLPPKAPGDKEGEEGEHEDSKESDEPKEGGKPGETKEGEVGKKPGPAKEHKPSKIPT 574
Query: 411 ATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTP--VEAPAAPV--DTPVTP 466
+ P P + P S P + P ++ P +P ++P +P
Sbjct: 575 LSKKPEFPKDPKHPKDPEEPKKPKRPR-SAQRPTRPKSPKLPELLDIPKSPKRPESPKSP 633
Query: 467 VASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPT 503
PP +P PE +P P ++P P +P
Sbjct: 634 KRPPPPQRPSSPERPEGPKIIKSPKPPKSPKPPFDPK 670
Score = 37.4 bits (86), Expect = 0.022
Identities = 43/170 (25%), Positives = 61/170 (35%), Gaps = 10/170 (5%)
Query: 351 KKISQTIEPSK----PPAAEPSQTTSESTEKKESS--PPTVPEVKPAASVEPVPVSPVPA 404
++I + I+ SK P E S E E E+S PP P K E
Sbjct: 483 QEIKKLIKKSKKKLAPIEEEDSDKHDEPPEGPEASGLPPKAPGDKEGEEGEHEDSKESDE 542
Query: 405 PSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPV 464
P P ET V A + +P+ + E P + P P P
Sbjct: 543 PKEG--GKPGETKEGEV-GKKPGPAKEHKPSKIPTLSKKPEFPKDPKHPKDPEEP-KKPK 598
Query: 465 TPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQTSQP 514
P ++ PT ++P PE + P +P E+P P P P P +P
Sbjct: 599 RPRSAQRPTRPKSPKLPELLDIPKSPKRPESPKSPKRPPPPQRPSSPERP 648
Score = 35.1 bits (80), Expect = 0.11
Identities = 31/170 (18%), Positives = 51/170 (30%), Gaps = 6/170 (3%)
Query: 351 KKISQTIEPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSP-VPAPSTPP 409
K +P +P + ++ T K P + ++ + P SP P P P
Sbjct: 583 KDPKHPKDPEEPKKPKRPRSAQRPTRPKSPKLPELLDIPKSPKRPESPKSPKRPPPPQRP 642
Query: 410 VATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVAS 469
+ P + +P + P P + A+ + V + +
Sbjct: 643 SSPERPEGPKIIKSPKPPKSPKPPFDPKFKEKFYDDYLDAAAKSKETKTTVVLDESFESI 702
Query: 470 APPTPAETPGAPEPVPSPAAPAPVETPSVPAEP-----TPTASPVQTSQP 514
T ETPG P P P P P EP ++ P
Sbjct: 703 LKETLPETPGTPFTTPRPLPPKLPRDEEFPFEPIGDPDAEQPDDIEFFTP 752
>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger. [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 1096
Score = 45.4 bits (107), Expect = 7e-05
Identities = 33/120 (27%), Positives = 49/120 (40%), Gaps = 7/120 (5%)
Query: 401 PVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAAST---PVEAPA 457
PA S V T +P T TAA + P+ + P A++T + P+
Sbjct: 316 HTPATSEGQVTISIMTGSSPAETKASTAAWK-IRNPLSRTSAPAVRIASATFRGLEKNPS 374
Query: 458 APVDTPVTP-VASAPPTPAETPGAPEPVP-SPAAPAPVETPSV-PAEPTPTASPVQTSQP 514
TP TP V + T +P P P P+P T ++ P P+P+ S + QP
Sbjct: 375 TAPSTPATPRVRAVLTTQVHHCVVVKPAPAVPTTPSPSLTTALFPEAPSPSPSALPPGQP 434
Score = 32.7 bits (74), Expect = 0.58
Identities = 20/74 (27%), Positives = 29/74 (39%), Gaps = 12/74 (16%)
Query: 363 PAAEPSQTTSESTEKKESSPPTVP-----------EVKPAASVEPVPVSPV-PAPSTPPV 410
PA + T EK S+ P+ P +V V+P P P P+PS
Sbjct: 357 PAVRIASATFRGLEKNPSTAPSTPATPRVRAVLTTQVHHCVVVKPAPAVPTTPSPSLTTA 416
Query: 411 ATPTETTPAPVSTP 424
P +P+P + P
Sbjct: 417 LFPEAPSPSPSALP 430
Score = 32.7 bits (74), Expect = 0.63
Identities = 32/128 (25%), Positives = 43/128 (33%), Gaps = 12/128 (9%)
Query: 366 EPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPT 425
E + TSE + P A++ +P+ S P V + T P+
Sbjct: 315 EHTPATSEGQVTISIMTGSSPAETKASTAAWKIRNPLSRTSAPAVRIASATFRGLEKNPS 374
Query: 426 ETAAASPVAAPV-PSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPP-TPAETPGAPEP 483
TA ++P V TT V P P P +P T A P AP P
Sbjct: 375 -TAPSTPATPRVRAVLTTQVHHCVVVKP---------APAVPTTPSPSLTTALFPEAPSP 424
Query: 484 VPSPAAPA 491
PS P
Sbjct: 425 SPSALPPG 432
>gnl|CDD|237182 PRK12727, PRK12727, flagellar biosynthesis regulator FlhF;
Provisional.
Length = 559
Score = 44.6 bits (105), Expect = 9e-05
Identities = 32/138 (23%), Positives = 41/138 (29%), Gaps = 5/138 (3%)
Query: 382 PPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAP----VSTPTETAAASPVAAPV 437
P +VP PAA+ P PA A T P + P + A APV
Sbjct: 117 PVSVPRQAPAAAPVRAASIPSPAAQALAHAAAVRTAPRQEHALSAVPEQLFADFLTTAPV 176
Query: 438 PSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPS 497
P AA PV A AA + + + P P
Sbjct: 177 PRAPVQAPVVAAPAPVPAIAAALAAHAAYAQDDDEQLDDDGFDLDDALPQILPPAALPPI 236
Query: 498 VPAEPTP-TASPVQTSQP 514
V A P + V + P
Sbjct: 237 VVAPAAPAALAAVAAAAP 254
Score = 44.2 bits (104), Expect = 1e-04
Identities = 33/145 (22%), Positives = 45/145 (31%), Gaps = 21/145 (14%)
Query: 390 PAASVEPVPVSPVPAPSTPPVATPTETTP-APVSTPTETA---------------AASPV 433
PA + P P P PV P + + A +S A + P
Sbjct: 63 PATAAAPAPAPQAPTKPAAPVHAPLKLSANANMSQRQRVASAAEDMIAAMALRQPVSVPR 122
Query: 434 AAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTP----AETPG-APEPVPSPA 488
AP +P P+ + A AA V T + P A+ AP P
Sbjct: 123 QAPAAAPVRAASIPSPAAQALAHAAAVRTAPRQEHALSAVPEQLFADFLTTAPVPRAPVQ 182
Query: 489 APAPVETPSVPAEPTPTASPVQTSQ 513
AP VPA A+ +Q
Sbjct: 183 APVVAAPAPVPAIAAALAAHAAYAQ 207
Score = 43.4 bits (102), Expect = 2e-04
Identities = 34/146 (23%), Positives = 47/146 (32%), Gaps = 10/146 (6%)
Query: 359 PSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTP 418
P + PAA P + S + P + AA+V P + P T
Sbjct: 121 PRQAPAAAPVRAASIPS-------PAAQALAHAAAVRTAPRQEHALSAVPEQLFADFLTT 173
Query: 419 APVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETP 478
APV A APVP+ + A + + +D + A P
Sbjct: 174 APVPRAPVQAPVVAAPAPVPAIAAAL--AAHAAYAQDDDEQLDDDGFDLDDALPQILPPA 231
Query: 479 GAPEPVPSPAAPAPVETPSVPAEPTP 504
P V +PAAP A P P
Sbjct: 232 ALPPIVVAPAAP-AALAAVAAAAPAP 256
Score = 36.9 bits (85), Expect = 0.029
Identities = 30/162 (18%), Positives = 49/162 (30%), Gaps = 7/162 (4%)
Query: 356 TIEPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTE 415
T + A + ++++ + + A +PV V P AP+ PV +
Sbjct: 77 TKPAAPVHAPLKLSANANMSQRQRVASAAEDMIAAMALRQPVSV-PRQAPAAAPVRAASI 135
Query: 416 TTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPA 475
+PA + A + P E A AP VA+ P PA
Sbjct: 136 PSPAAQALAHAAAVRTAPRQEHALSAVP-EQLFADFLTTAPVPRAPVQAPVVAAPAPVPA 194
Query: 476 ETPGAPEPVPSPAAPA-PVETPSVPAEPTPTASPVQTSQPCA 516
+ + AA A + + Q P A
Sbjct: 195 ----IAAALAAHAAYAQDDDEQLDDDGFDLDDALPQILPPAA 232
Score = 33.0 bits (75), Expect = 0.38
Identities = 20/106 (18%), Positives = 32/106 (30%), Gaps = 1/106 (0%)
Query: 411 ATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASA 470
++T + A + AAPV +P + S +A D
Sbjct: 57 TARSDTPATAAAPAPAPQAPTKPAAPVHAPLKLSANANMSQRQRVASAAEDMIAAMALRQ 116
Query: 471 PPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQTSQPCA 516
P + A PV + + P+P A +P Q A
Sbjct: 117 PVSVPRQAPAAAPVRAASIPSPAAQALAHA-AAVRTAPRQEHALSA 161
>gnl|CDD|223880 COG0810, TonB, Periplasmic protein TonB, links inner and outer
membranes [Cell envelope biogenesis, outer membrane].
Length = 244
Score = 43.6 bits (103), Expect = 1e-04
Identities = 32/120 (26%), Positives = 46/120 (38%), Gaps = 2/120 (1%)
Query: 358 EPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPS-TPPVATPTET 416
E +P P + TE + PT P+ K E P P P P P +
Sbjct: 54 EEPQPEPEPPEEQPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPKPKPKPKPKPKPKVKP 113
Query: 417 TPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAE 476
P P P++TAA +P AAP P + A+ A+ + + AP PA+
Sbjct: 114 QPKPKKPPSKTAAKAP-AAPNQPARPPSAASASGAATGPSASYLSGLRRAIRRAPRYPAQ 172
Score = 40.5 bits (95), Expect = 9e-04
Identities = 30/126 (23%), Positives = 40/126 (31%), Gaps = 12/126 (9%)
Query: 356 TIEPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTE 415
+ P++ E E P P +P EP P P P +
Sbjct: 41 VFLLAAKVLEAPTEEPQPEPEPPEEQPK--PPTEPETPPEPTPPKPKEKPKPEKKPKKPK 98
Query: 416 TTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPA 475
P P P P P P P + P + T +APAAP P A++ A
Sbjct: 99 PKPKPKPKPK------PKVKPQPKP----KKPPSKTAAKAPAAPNQPARPPSAASASGAA 148
Query: 476 ETPGAP 481
P A
Sbjct: 149 TGPSAS 154
Score = 35.1 bits (81), Expect = 0.054
Identities = 24/120 (20%), Positives = 30/120 (25%), Gaps = 3/120 (2%)
Query: 389 KPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPA 448
V P P P P P P P+P P E P
Sbjct: 32 VGIELVPLAVFLLAAKVLEAPTEEPQPEPEPPEEQPKPPTE--PETPPEPTPPKPKEKPK 89
Query: 449 ASTPVEAPAAPVDTPVTPVASAPPTPAE-TPGAPEPVPSPAAPAPVETPSVPAEPTPTAS 507
+ P P P P P + +PAAP P A + A+
Sbjct: 90 PEKKPKKPKPKPKPKPKPKPKVKPQPKPKKPPSKTAAKAPAAPNQPARPPSAASASGAAT 149
Score = 34.4 bits (79), Expect = 0.095
Identities = 27/129 (20%), Positives = 36/129 (27%), Gaps = 6/129 (4%)
Query: 391 AASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAAS 450
+ V + VP + +A P P P+ P
Sbjct: 26 LHQEDFVGIELVPL-AVFLLAAKVLEAPTEEPQPEP--EPPEEQPKPPTEPETPPEPTPP 82
Query: 451 TPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPA-APAPVETPSVPAEPTPTASPV 509
P E P P P P P P P +P P P P+ + A P P
Sbjct: 83 KPKEKP-KPEKKPKKPKPKPKPKPKPKP-KVKPQPKPKKPPSKTAAKAPAAPNQPARPPS 140
Query: 510 QTSQPCAST 518
S A+T
Sbjct: 141 AASASGAAT 149
Score = 33.2 bits (76), Expect = 0.21
Identities = 19/119 (15%), Positives = 29/119 (24%), Gaps = 1/119 (0%)
Query: 397 VPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAP 456
V + P E P T +P P P + +
Sbjct: 41 VFLLAAKVLEAPTEEPQPEPEPPEEQPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPKPK 100
Query: 457 AAPVDTPVTPVASAP-PTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQTSQP 514
P P V P P + A + +P PA + + + S S
Sbjct: 101 PKPKPKPKPKVKPQPKPKKPPSKTAAKAPAAPNQPARPPSAASASGAATGPSASYLSGL 159
Score = 29.4 bits (66), Expect = 4.3
Identities = 16/92 (17%), Positives = 21/92 (22%), Gaps = 4/92 (4%)
Query: 420 PVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPG 479
+ V V V P P P + P P P P
Sbjct: 24 VFLHQEDFVGIELVPLAVFLLAAKVLEAPTEEPQPEPEPPEEQPKPPTEPETPPE---PT 80
Query: 480 APEPVPSPAAPAPVETP-SVPAEPTPTASPVQ 510
P+P P + P P V+
Sbjct: 81 PPKPKEKPKPEKKPKKPKPKPKPKPKPKPKVK 112
>gnl|CDD|218621 pfam05518, Totivirus_coat, Totivirus coat protein.
Length = 753
Score = 44.4 bits (105), Expect = 1e-04
Identities = 32/138 (23%), Positives = 41/138 (29%), Gaps = 11/138 (7%)
Query: 382 PPTVPEVKPAASVEPVPVSPVPAPSTPPV---ATPTETTPAPVSTPTETAAASPVAAPVP 438
TV E+ + PV + +P P P P PV P TA S VA P
Sbjct: 624 RATVGEM-IISGFPPVFKTALPRPDYNRGGEAGGPGVPGPVPVGMPAHTARPSRVARGDP 682
Query: 439 SPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSV 498
T + + P P PP P A P P ++ T
Sbjct: 683 VRPTAHHAALRAPQAPRPGGPPGGGG----GLPPPPDLPAAAG-PAPCGSSLIASPTA-- 735
Query: 499 PAEPTPTASPVQTSQPCA 516
P EP P +
Sbjct: 736 PPEPEPPGAEQADGAENQ 753
Score = 35.5 bits (82), Expect = 0.063
Identities = 21/140 (15%), Positives = 34/140 (24%), Gaps = 22/140 (15%)
Query: 362 PPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPV 421
PP + + + E+ P VP PV P T
Sbjct: 636 PPVFKTALPRPDYNRGGEAGGPGVPGPV-------------------PVGMPAHTARPSR 676
Query: 422 STPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAP 481
+ + A + +P P P P + A P + +P
Sbjct: 677 VARGDPVRPTAHHAALRAPQAPRPGGPPGGGGGLPPPP---DLPAAAGPAPCGSSLIASP 733
Query: 482 EPVPSPAAPAPVETPSVPAE 501
P P P + +
Sbjct: 734 TAPPEPEPPGAEQADGAENQ 753
>gnl|CDD|223033 PHA03291, PHA03291, envelope glycoprotein I; Provisional.
Length = 401
Score = 43.8 bits (103), Expect = 2e-04
Identities = 31/126 (24%), Positives = 43/126 (34%), Gaps = 8/126 (6%)
Query: 390 PAASVEPVPVSPVPAPSTPPVATPTETT-------PAPVSTPTETAAASPVAAPVPSPTT 442
AS+ P+ ++ PA T E + P+S P A V A
Sbjct: 154 TNASLFPLGLAAFPAEGTLAAPPLGEGSADGSCDPALPLSAPRLGPADVFVPATPRPTPR 213
Query: 443 PVESPAASTPVEAPAAPVDTPVTPVASAPPTP-AETPGAPEPVPSPAAPAPVETPSVPAE 501
SP + +P T + ++ P A T E P+P P E P A
Sbjct: 214 TTASPETTPTPSTTTSPPSTTIPAPSTTIAAPQAGTTPEAEGTPAPPTPGGGEAPPANAT 273
Query: 502 PTPTAS 507
P P AS
Sbjct: 274 PAPEAS 279
Score = 42.6 bits (100), Expect = 4e-04
Identities = 31/114 (27%), Positives = 42/114 (36%), Gaps = 1/114 (0%)
Query: 357 IEPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTET 416
AA P S + P + P + PA P P P + P TPT +
Sbjct: 166 FPAEGTLAAPPLGEGSADGSCDPALPLSAPRLGPADVFVPATPRPTPRTTASPETTPTPS 225
Query: 417 TPAPVSTPTETAAASPVAAPVPSPTT-PVESPAASTPVEAPAAPVDTPVTPVAS 469
T + T A ++ +AAP T +PA TP A P + P AS
Sbjct: 226 TTTSPPSTTIPAPSTTIAAPQAGTTPEAEGTPAPPTPGGGEAPPANATPAPEAS 279
Score = 38.4 bits (89), Expect = 0.007
Identities = 20/90 (22%), Positives = 31/90 (34%), Gaps = 8/90 (8%)
Query: 435 APVPSPTTPVESPAASTPVEAPAAPVDTPVTP--------VASAPPTPAETPGAPEPVPS 486
A P+ T P + P P V + P T +PE P+
Sbjct: 164 AAFPAEGTLAAPPLGEGSADGSCDPALPLSAPRLGPADVFVPATPRPTPRTTASPETTPT 223
Query: 487 PAAPAPVETPSVPAEPTPTASPVQTSQPCA 516
P+ + ++PA T A+P + P A
Sbjct: 224 PSTTTSPPSTTIPAPSTTIAAPQAGTTPEA 253
>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family. Atrophin-1 is the
protein product of the dentatorubral-pallidoluysian
atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive
neurodegenerative disorder. It is caused by the
expansion of a CAG repeat in the DRPLA gene on
chromosome 12p. This results in an extended
polyglutamine region in atrophin-1, that is thought to
confer toxicity to the protein, possibly through
altering its interactions with other proteins. The
expansion of a CAG repeat is also the underlying defect
in six other neurodegenerative disorders, including
Huntington's disease. One interaction of expanded
polyglutamine repeats that is thought to be pathogenic
is that with the short glutamine repeat in the
transcriptional coactivator CREB binding protein, CBP.
This interaction draws CBP away from its usual nuclear
location to the expanded polyglutamine repeat protein
aggregates that are characteristic of the polyglutamine
neurodegenerative disorders. This interferes with
CBP-mediated transcription and causes cytotoxicity.
Length = 979
Score = 44.3 bits (104), Expect = 2e-04
Identities = 40/184 (21%), Positives = 61/184 (33%), Gaps = 16/184 (8%)
Query: 351 KKISQTIEPSKPPAAEPSQTTSES---TEKKESSPPTVPEVKPAASVEPVPVSPVPAPST 407
K I Q S P P S+S +++ P P ++ P +P P PS
Sbjct: 141 KDIDQDNRSSSPSIPSPQDNESDSDSSAQQQLLQPQGPPSIQVPPGAALAPSAPPPTPSA 200
Query: 408 PPV-----ATPTETTPAPVSTPTETAAASPVAAP--VPSPTTPVESPAASTPVEAPAAPV 460
V + P P + ++P P +PSP P++ AS P AP
Sbjct: 201 QAVPPQGSPIAAQPAPQPQQPSPLSLISAPSLHPQRLPSPHPPLQPQTASQQSPQPPAPS 260
Query: 461 DTPVTPVASAPPTPAETPGAPEPVP------SPAAPAPVETPSVPAEPTPTASPVQTSQP 514
P P PV +P P + VP P P+ + + P
Sbjct: 261 SRHPQSSHHGPGPPMPHALQQGPVFLQHPSSNPPQPFGLAQSQVPPLPLPSQAQPHSHTP 320
Query: 515 CAST 518
+ +
Sbjct: 321 PSQS 324
Score = 38.5 bits (89), Expect = 0.009
Identities = 31/142 (21%), Positives = 40/142 (28%), Gaps = 2/142 (1%)
Query: 363 PAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVS 422
PA +P Q + S S P P P P P + P
Sbjct: 214 PAPQPQQPSPLSLISAPSLHPQRLPSPHPPLQPQTASQQSPQPPAPSSRHPQSSHHGPGP 273
Query: 423 TPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPE 482
PV PS P P + P P+ + P + PP+ +
Sbjct: 274 PMPHALQQGPVFLQHPSSNPP--QPFGLAQSQVPPLPLPSQAQPHSHTPPSQSALQPQQP 331
Query: 483 PVPSPAAPAPVETPSVPAEPTP 504
P P PAP P TP
Sbjct: 332 PREQPLPPAPSMPHIKPPPTTP 353
Score = 37.4 bits (86), Expect = 0.019
Identities = 39/158 (24%), Positives = 52/158 (32%), Gaps = 8/158 (5%)
Query: 362 PPAAEPSQTTSESTEKKESSPPT--VPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPA 419
PPA +P + PP +P+ +P SV P + S PP A+ +
Sbjct: 384 PPALKPLSSLPTHHPPSAHPPPLQLMPQSQPLQSVPAQPPVLTQSQSLPPKASTHPHSGL 443
Query: 420 PVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAA------PVDTPVTPVASAPPT 473
P A P + P S STP P A P + A P
Sbjct: 444 HSGPPQSPFAQHPFTSGGLPAIGPPPSLPTSTPAAPPRASSGSQPPGSALPSSGGCAGPG 503
Query: 474 PAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQT 511
P P + P A P P P P+P + V T
Sbjct: 504 PPLPPIQIKEEPLDEAEEPESPPPPPRSPSPEPTVVNT 541
Score = 31.6 bits (71), Expect = 1.2
Identities = 38/149 (25%), Positives = 48/149 (32%), Gaps = 12/149 (8%)
Query: 360 SKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPA 419
PP PSQ S T P +P P+P + P P TTP
Sbjct: 303 QVPPLPLPSQAQPHSH--------TPPSQSALQPQQPPREQPLPPAPSMPHIKPPPTTPI 354
Query: 420 PVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPG 479
P + P P P P P P P + + T P A P P +
Sbjct: 355 PQLPNQSHKHPPHLQGPSPFPQMPSNLPPP--PALKPLSSLPTHHPPS--AHPPPLQLMP 410
Query: 480 APEPVPSPAAPAPVETPSVPAEPTPTASP 508
+P+ S A PV T S P + P
Sbjct: 411 QSQPLQSVPAQPPVLTQSQSLPPKASTHP 439
Score = 31.2 bits (70), Expect = 1.8
Identities = 28/172 (16%), Positives = 48/172 (27%), Gaps = 12/172 (6%)
Query: 359 PSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVS-PVPAPSTPPVATPTETT 417
P +PP +P K +P++ + P + P P P P P
Sbjct: 328 PQQPPREQPLPPAPSMPHIKPPPTTPIPQLPNQSHKHPPHLQGPSPFPQMPSNLPPPPAL 387
Query: 418 PAPVSTPTETAAASP------VAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAP 471
S PT ++ + P + P + P + P P + + S P
Sbjct: 388 KPLSSLPTHHPPSAHPPPLQLMPQSQPLQSVPAQPPVLTQSQSLPPKASTHPHSGLHSGP 447
Query: 472 PTPAE-----TPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQTSQPCAST 518
P T G + P + + P + + P
Sbjct: 448 PQSPFAQHPFTSGGLPAIGPPPSLPTSTPAAPPRASSGSQPPGSALPSSGGC 499
>gnl|CDD|233045 TIGR00601, rad23, UV excision repair protein Rad23. All proteins
in this family for which functions are known are
components of a multiprotein complex used for targeting
nucleotide excision repair to specific parts of the
genome. In humans, Rad23 complexes with the XPC protein.
This family is based on the phylogenomic analysis of JA
Eisen (1999, Ph.D. Thesis, Stanford University) [DNA
metabolism, DNA replication, recombination, and repair].
Length = 378
Score = 43.0 bits (101), Expect = 3e-04
Identities = 18/77 (23%), Positives = 30/77 (38%), Gaps = 9/77 (11%)
Query: 416 TTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPA 475
+ P + AA+P +AP P+P+ P + APA+ V +P + A
Sbjct: 75 SKPKTGTGKVAPPAATPTSAPTPTPSPPASPASG--MSAAPASAV-EEKSPSEESATATA 131
Query: 476 ETPGAPEPVPSPAAPAP 492
PS + P+
Sbjct: 132 PES------PSTSVPSS 142
Score = 41.4 bits (97), Expect = 8e-04
Identities = 18/78 (23%), Positives = 28/78 (35%), Gaps = 1/78 (1%)
Query: 360 SKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPA 419
SKP +T +P P PA+ + P S V +P + T T P
Sbjct: 75 SKPKTGTGKVAPPAATPTSAPTPTPSPPASPASGMSAAPASAVE-EKSPSEESATATAPE 133
Query: 420 PVSTPTETAAASPVAAPV 437
ST ++ + + V
Sbjct: 134 SPSTSVPSSGSDAASTLV 151
Score = 38.3 bits (89), Expect = 0.008
Identities = 15/70 (21%), Positives = 24/70 (34%), Gaps = 2/70 (2%)
Query: 406 STPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVT 465
+ P TP TPT + ASP + +P + V S E+ A +
Sbjct: 79 TGTGKVAPPAATPTSAPTPTPSPPASPASGMSAAPASAV--EEKSPSEESATATAPESPS 136
Query: 466 PVASAPPTPA 475
+ + A
Sbjct: 137 TSVPSSGSDA 146
Score = 38.3 bits (89), Expect = 0.009
Identities = 17/82 (20%), Positives = 30/82 (36%), Gaps = 8/82 (9%)
Query: 370 TTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAA 429
+ ++ K + P P P + P P SP S P + +P+E +A
Sbjct: 75 SKPKTGTGKVAPPAATPTSAPTPTPSP-PASPASGMSAAPASA------VEEKSPSEESA 127
Query: 430 ASPVAAPVPSPTTPVESPAAST 451
+ PS + P A++
Sbjct: 128 TATAPES-PSTSVPSSGSDAAS 148
Score = 37.2 bits (86), Expect = 0.019
Identities = 17/72 (23%), Positives = 27/72 (37%), Gaps = 5/72 (6%)
Query: 445 ESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTP 504
+ + V PAA + TP S P +P A +PA+ ++PS +
Sbjct: 76 KPKTGTGKVAPPAATPTSAPTPTPSPPASP-----ASGMSAAPASAVEEKSPSEESATAT 130
Query: 505 TASPVQTSQPCA 516
TS P +
Sbjct: 131 APESPSTSVPSS 142
Score = 36.4 bits (84), Expect = 0.028
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
Query: 402 VPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVD 461
V P+ P + PT T P S + +AA A +P E A +T E+P+ V
Sbjct: 84 VAPPAATPTSAPTPTPSPPASPASGMSAAPASAVE---EKSPSEESATATAPESPSTSVP 140
Query: 462 TPVTPVASA 470
+ + AS
Sbjct: 141 SSGSDAAST 149
Score = 33.3 bits (76), Expect = 0.28
Identities = 16/68 (23%), Positives = 23/68 (33%), Gaps = 1/68 (1%)
Query: 446 SPAASTPVEAP-AAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTP 504
+ + P P +AP TP P + A A A E A P P+ P
Sbjct: 81 TGKVAPPAATPTSAPTPTPSPPASPASGMSAAPASAVEEKSPSEESATATAPESPSTSVP 140
Query: 505 TASPVQTS 512
++ S
Sbjct: 141 SSGSDAAS 148
Score = 32.6 bits (74), Expect = 0.54
Identities = 16/67 (23%), Positives = 22/67 (32%), Gaps = 2/67 (2%)
Query: 392 ASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAAST 451
V P +P AP TP + P + P + + T ESP+ S
Sbjct: 82 GKVAPPAATPTSAP-TPTPSPPASPASGMSAAPASAVEEK-SPSEESATATAPESPSTSV 139
Query: 452 PVEAPAA 458
P A
Sbjct: 140 PSSGSDA 146
Score = 30.6 bits (69), Expect = 1.8
Identities = 21/86 (24%), Positives = 30/86 (34%), Gaps = 10/86 (11%)
Query: 428 AAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSP 487
VA P +PT +A TP +P A SA P A +P +
Sbjct: 79 TGTGKVAPPAATPT------SAPTPTPSPPA----SPASGMSAAPASAVEEKSPSEESAT 128
Query: 488 AAPAPVETPSVPAEPTPTASPVQTSQ 513
A + SVP+ + AS +
Sbjct: 129 ATAPESPSTSVPSSGSDAASTLVVGS 154
Score = 30.2 bits (68), Expect = 2.3
Identities = 17/58 (29%), Positives = 20/58 (34%)
Query: 460 VDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQTSQPCAS 517
V P T P A AP P PSP A + PA SP + S +
Sbjct: 74 VSKPKTGTGKVAPPAATPTSAPTPTPSPPASPASGMSAAPASAVEEKSPSEESATATA 131
>gnl|CDD|184918 PRK14954, PRK14954, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 620
Score = 43.4 bits (102), Expect = 3e-04
Identities = 26/75 (34%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
Query: 446 SPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGA-PEPVPSPA-APAPVETPSVPAEPT 503
SPA S V+ A D P P P E PGA P +PSPA AP P + P V
Sbjct: 383 SPAGSPDVKKKAPEPDLP-QPDRHPGPAKPEAPGARPAELPSPASAPTPEQQPPVARSAP 441
Query: 504 PTASPVQTSQPCAST 518
SP ++ ++
Sbjct: 442 LPPSPQASAPRNVAS 456
Score = 42.6 bits (100), Expect = 4e-04
Identities = 19/85 (22%), Positives = 26/85 (30%), Gaps = 10/85 (11%)
Query: 415 ETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVT-PVASAPPT 473
P+P +P A P P P AP P P ++ PT
Sbjct: 379 GVAPSPAGSPDVKKKAPEPDLP---------QPDRHPGPAKPEAPGARPAELPSPASAPT 429
Query: 474 PAETPGAPEPVPSPAAPAPVETPSV 498
P + P P P +P +V
Sbjct: 430 PEQQPPVARSAPLPPSPQASAPRNV 454
Score = 41.9 bits (98), Expect = 8e-04
Identities = 28/138 (20%), Positives = 36/138 (26%), Gaps = 28/138 (20%)
Query: 388 VKPAASVEPVPVSPVP----APSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTP 443
V+ V P P AP PA P A P P P+
Sbjct: 374 VRNDGGVAPSPAGSPDVKKKAPEPDLPQPDRHPGPAKPEAPG----ARPAELPSPA---- 425
Query: 444 VESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEP------------VPSPAAPA 491
+A TP + P P+ P A G P + +
Sbjct: 426 ----SAPTPEQQPPVARSAPLPPSPQASAPRNVASGKPGVDLGSWQGKFMNFTRNGSRKQ 481
Query: 492 PVETPSVPAEPTPTASPV 509
PV+ S A T V
Sbjct: 482 PVQASSSDAAQTGVFEGV 499
Score = 32.6 bits (74), Expect = 0.54
Identities = 23/135 (17%), Positives = 35/135 (25%), Gaps = 25/135 (18%)
Query: 352 KISQTIEPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVA 411
++ + + A P+ + + E P A E P PS
Sbjct: 369 RLIELVRNDGGVAPSPAGSPDVKKKAPEPDLPQPDRHPGPAKPEAPGARPAELPSPASAP 428
Query: 412 TPTETTPAPVSTPTETAAASPVAAPVPS-------------------------PTTPVES 446
TP + P S P + + V S P S
Sbjct: 429 TPEQQPPVARSAPLPPSPQASAPRNVASGKPGVDLGSWQGKFMNFTRNGSRKQPVQASSS 488
Query: 447 PAASTPVEAPAAPVD 461
AA T V A ++
Sbjct: 489 DAAQTGVFEGVAELE 503
Score = 30.3 bits (68), Expect = 2.7
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Query: 472 PTPAETPGAPEPVPSPAAPAPVETPSVPAEPT-PTASPVQTSQPCAST 518
P+PA +P + P P P P P PA+P P A P + P ++
Sbjct: 382 PSPAGSPDVKKKAPEPDLPQPDRHPG-PAKPEAPGARPAELPSPASAP 428
>gnl|CDD|237082 PRK12373, PRK12373, NADH dehydrogenase subunit E; Provisional.
Length = 400
Score = 42.9 bits (101), Expect = 3e-04
Identities = 30/156 (19%), Positives = 40/156 (25%), Gaps = 19/156 (12%)
Query: 359 PSKPPAAEPSQTTSES----TEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPT 414
P P + + SE T E + + AS + T
Sbjct: 175 PVVKPGPQIGRYASEPAGGLTSLTEEAGKA----RYNASKALAE--DIGDTVKRIDGTEV 228
Query: 415 ETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTP 474
A P A P + A TP AP A + P
Sbjct: 229 PLLAPWQGDA---APVPPSEAARPKSADAETNAALKTPATAPKA----AAKNAKAPEAQP 281
Query: 475 AETPGAPEPVPSPAAP--APVETPSVPAEPTPTASP 508
A EP P AA A P++ +P P
Sbjct: 282 VSGTAAAEPAPKEAAKAAAAAAKPALEDKPRPLGIA 317
Score = 35.9 bits (83), Expect = 0.039
Identities = 20/106 (18%), Positives = 29/106 (27%), Gaps = 12/106 (11%)
Query: 387 EVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVES 446
EV A + P+ + P + ET A +P AP ++
Sbjct: 227 EVPLLAPWQGDAAPVPPSEAARPKSADAETNAA---------LKTPATAPKA-AAKNAKA 276
Query: 447 PAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEP--VPSPAAP 490
P A AA A+A P P + P
Sbjct: 277 PEAQPVSGTAAAEPAPKEAAKAAAAAAKPALEDKPRPLGIARPGGA 322
Score = 34.8 bits (80), Expect = 0.12
Identities = 22/104 (21%), Positives = 28/104 (26%), Gaps = 16/104 (15%)
Query: 426 ETAAASPVAAPVPSPT-TPVESPAASTPVEAPAAPVDT---PVTPVASAPP--TPAETPG 479
A A + V T V A AP P + + TPA P
Sbjct: 209 SKALAEDIGDTVKRIDGTEVPLLAPWQGDAAPVPPSEAARPKSADAETNAALKTPATAPK 268
Query: 480 AP---------EPVPSPAAPAPVETPSVPAEPTPTASPVQTSQP 514
A +PV AA P + A P +P
Sbjct: 269 AAAKNAKAPEAQPVSGTAAAEPAPKEAAKAAAAAAK-PALEDKP 311
Score = 32.5 bits (74), Expect = 0.56
Identities = 13/81 (16%), Positives = 23/81 (28%), Gaps = 6/81 (7%)
Query: 358 EPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETT 417
E ++P +A+ + T A +PV + P+ A
Sbjct: 245 EAARPKSADAETNAALKTPATAPKAAAKN--AKAPEAQPVSGTAAAEPAPKEAAKAA--- 299
Query: 418 PAPVSTPTETAAASPVAAPVP 438
A + P P+ P
Sbjct: 300 -AAAAKPALEDKPRPLGIARP 319
Score = 32.1 bits (73), Expect = 0.79
Identities = 25/102 (24%), Positives = 34/102 (33%), Gaps = 4/102 (3%)
Query: 351 KKISQTIEPSKPPAAEPSQTT--SESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTP 408
K+I T P P + SE+ K + T +K A+ AP
Sbjct: 221 KRIDGTEVPLLAPWQGDAAPVPPSEAARPKSADAETNAALKTPATAPKAAAKNAKAPEAQ 280
Query: 409 PVATPTETTPAP-VSTPTETAAASPVAAPVPSPTTPVESPAA 449
PV+ PAP + AAA P P P + P
Sbjct: 281 PVSGTAAAEPAPKEAAKAAAAAAKPALEDKPRPLG-IARPGG 321
>gnl|CDD|184923 PRK14959, PRK14959, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 624
Score = 43.1 bits (101), Expect = 3e-04
Identities = 26/91 (28%), Positives = 30/91 (32%), Gaps = 10/91 (10%)
Query: 422 STPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAP 481
+ PT AP T +PA P AP+ P P APP P + P
Sbjct: 396 TIPTPGTQGPQGTAPAAGMTPSSAAPATPAPSAAPS-----PRVPWDDAPPAPPRSGIPP 450
Query: 482 EPVPSPAAPAPVETPSVPAEPTPTASPVQTS 512
P AP E VP P AS
Sbjct: 451 RP-----APRMPEASPVPGAPDSVASASDAP 476
Score = 42.7 bits (100), Expect = 4e-04
Identities = 36/115 (31%), Positives = 46/115 (40%), Gaps = 7/115 (6%)
Query: 390 PAASVEPVPVSPVPAPSTPP-VATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPA 448
P+ S P S A P P T PA TP+ A A+P + PSP P + A
Sbjct: 381 PSGSAAEGPASGGAATIPTPGTQGPQGTAPAAGMTPSSAAPATPAPSAAPSPRVPWDD-A 439
Query: 449 ASTPVEAPAAPVDTP----VTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVP 499
P + P P +PV AP + A AP + P+ A TPS P
Sbjct: 440 PPAPPRSGIPPRPAPRMPEASPVPGAPDSVASASDAPPTLGDPSDTAE-HTPSGP 493
>gnl|CDD|237011 PRK11892, PRK11892, pyruvate dehydrogenase subunit beta;
Provisional.
Length = 464
Score = 43.0 bits (102), Expect = 3e-04
Identities = 15/56 (26%), Positives = 21/56 (37%)
Query: 445 ESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPA 500
E +AS APAA + A+A A+ P+ A P +PA
Sbjct: 80 EGESASDAGAAPAAAAEAAAAAPAAAAAAAAKKAAPAPAAPAAPAAEVAADPDIPA 135
Score = 36.4 bits (85), Expect = 0.029
Identities = 15/62 (24%), Positives = 20/62 (32%), Gaps = 4/62 (6%)
Query: 454 EAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAP----VETPSVPAEPTPTASPV 509
E+ + P +A PA A +PA AP E + P P T
Sbjct: 82 ESASDAGAAPAAAAEAAAAAPAAAAAAAAKKAAPAPAAPAAPAAEVAADPDIPAGTEMVT 141
Query: 510 QT 511
T
Sbjct: 142 MT 143
Score = 36.0 bits (84), Expect = 0.042
Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Query: 426 ETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPV-DTPVTPVASAPPTPAETP 478
A A+P AA + P + AA+ APA P VA+ P PA T
Sbjct: 85 SDAGAAPAAAAEAAAAAPAAAAAAAAKKAAPAPAAPAAPAAEVAADPDIPAGTE 138
Score = 35.7 bits (83), Expect = 0.052
Identities = 16/70 (22%), Positives = 21/70 (30%), Gaps = 5/70 (7%)
Query: 387 EVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVES 446
E A P + A + A A P A A+P A P P +
Sbjct: 82 ESASDAGAAPAAAAEAAAAAPAAAAAAAAKKAA----PAPAAPAAPAAEVAADPDIPAGT 137
Query: 447 PAASTPV-EA 455
+ V EA
Sbjct: 138 EMVTMTVREA 147
Score = 34.9 bits (81), Expect = 0.11
Identities = 19/68 (27%), Positives = 25/68 (36%), Gaps = 11/68 (16%)
Query: 428 AAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSP 487
+A+ AAP + +PAA+ A A P +AP PA E P
Sbjct: 83 SASDAGAAPAAAAEAAAAAPAAAAAAAAKKAA------PAPAAPAAPA-----AEVAADP 131
Query: 488 AAPAPVET 495
PA E
Sbjct: 132 DIPAGTEM 139
Score = 31.8 bits (73), Expect = 0.96
Identities = 9/48 (18%), Positives = 15/48 (31%)
Query: 467 VASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQTSQP 514
+ A PA A P+ AA A + + + + P
Sbjct: 84 ASDAGAAPAAAAEAAAAAPAAAAAAAAKKAAPAPAAPAAPAAEVAADP 131
Score = 31.0 bits (71), Expect = 1.6
Identities = 14/57 (24%), Positives = 20/57 (35%), Gaps = 3/57 (5%)
Query: 407 TPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTP 463
+ A P A + P AAA+ AA +P + A+ P P T
Sbjct: 85 SDAGAAPAAAAEAAAAAP---AAAAAAAAKKAAPAPAAPAAPAAEVAADPDIPAGTE 138
Score = 30.7 bits (70), Expect = 1.8
Identities = 11/55 (20%), Positives = 20/55 (36%)
Query: 460 VDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQTSQP 514
V+TP+ + + ++ AP AA AP + A+ A +
Sbjct: 70 VNTPIAVLLEEGESASDAGAAPAAAAEAAAAAPAAAAAAAAKKAAPAPAAPAAPA 124
>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP). This family
contains bacterial fibronectin-attachment proteins
(FAP). Family members are rich in alanine and proline,
are approximately 300 long, and seem to be restricted to
mycobacteria. These proteins contain a
fibronectin-binding motif that allows mycobacteria to
bind to fibronectin in the extracellular matrix.
Length = 297
Score = 42.2 bits (99), Expect = 4e-04
Identities = 31/90 (34%), Positives = 38/90 (42%), Gaps = 3/90 (3%)
Query: 405 PSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVE-SPAASTPVEAPAAPVDTP 463
+T +A + ++ P TA A P P P T +PAA P PAAP
Sbjct: 15 WTTLAIAAVAGASAVAIALPA-TANADPAPPPPPPSTAAAAPAPAAPPPPPPPAAPPAPQ 73
Query: 464 VTPVASAPPTPAETPGAPEPVP-SPAAPAP 492
+APP P P AP P P P AP P
Sbjct: 74 PDDPNAAPPPPPADPNAPPPPPVDPNAPPP 103
Score = 41.8 bits (98), Expect = 5e-04
Identities = 24/75 (32%), Positives = 27/75 (36%)
Query: 409 PVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVA 468
P + P P T AA +P A P P P +P P AP P P P
Sbjct: 34 PATANADPAPPPPPPSTAAAAPAPAAPPPPPPPAAPPAPQPDDPNAAPPPPPADPNAPPP 93
Query: 469 SAPPTPAETPGAPEP 483
A P APEP
Sbjct: 94 PPVDPNAPPPPAPEP 108
Score = 40.6 bits (95), Expect = 0.001
Identities = 31/99 (31%), Positives = 37/99 (37%), Gaps = 2/99 (2%)
Query: 412 TPTETTPAPVSTPTETAAASP-VAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASA 470
T A V+ + A A P A P+P P S AA+ P A P P P A
Sbjct: 14 LWTTLAIAAVAGASAVAIALPATANADPAPPPPPPSTAAAAPAPAAPPPPPPPAAPPAPQ 73
Query: 471 PPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPV 509
P P P P P A P P P+ P P P +
Sbjct: 74 PDDPNAAP-PPPPADPNAPPPPPVDPNAPPPPAPEPGRI 111
Score = 38.7 bits (90), Expect = 0.006
Identities = 18/81 (22%), Positives = 25/81 (30%)
Query: 392 ASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAAST 451
A +P + P+ PP T + P + AP P P +
Sbjct: 28 AVAIALPATANADPAPPPPPPSTAAAAPAPAAPPPPPPPAAPPAPQPDDPNAAPPPPPAD 87
Query: 452 PVEAPAAPVDTPVTPVASAPP 472
P P PVD P + P
Sbjct: 88 PNAPPPPPVDPNAPPPPAPEP 108
Score = 38.0 bits (88), Expect = 0.009
Identities = 25/90 (27%), Positives = 28/90 (31%), Gaps = 5/90 (5%)
Query: 427 TAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPS 486
A A A + P T PA P + AA P P PP P P P
Sbjct: 21 AAVAGASAVAIALPATANADPAPPPPPPSTAAAAPAPAAPPPPPPPAA-----PPAPQPD 75
Query: 487 PAAPAPVETPSVPAEPTPTASPVQTSQPCA 516
AP P+ P P P P A
Sbjct: 76 DPNAAPPPPPADPNAPPPPPVDPNAPPPPA 105
Score = 34.5 bits (79), Expect = 0.099
Identities = 21/74 (28%), Positives = 29/74 (39%)
Query: 374 STEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPV 433
+T + +PP P AA+ P P P P+ PP P + AP P + A P
Sbjct: 35 ATANADPAPPPPPPSTAAAAPAPAAPPPPPPPAAPPAPQPDDPNAAPPPPPADPNAPPPP 94
Query: 434 AAPVPSPTTPVESP 447
+P P P
Sbjct: 95 PVDPNAPPPPAPEP 108
>gnl|CDD|225805 COG3266, DamX, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 292
Score = 42.2 bits (99), Expect = 4e-04
Identities = 30/154 (19%), Positives = 50/154 (32%), Gaps = 5/154 (3%)
Query: 366 EPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTP- 424
E + +S + ++ + P + + P T + A
Sbjct: 40 EAPASAEKSIDLNGATQANAQQPAPGPTSAENTSQDLSLPPISSTPTQGQEPLAQDGQQR 99
Query: 425 TETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPV 484
E AA P + + + A ++ + A V PV +A AE P PV
Sbjct: 100 VEVQGDLNNAAVQPQNLSQLNNVAVTSTLPTEPATV----APVRNASVPTAERPAITRPV 155
Query: 485 PSPAAPAPVETPSVPAEPTPTASPVQTSQPCAST 518
+ A P P T T + VQT+ P +
Sbjct: 156 RAQAVSEPAVEPKAAKTATATEAKVQTASPAQTP 189
Score = 37.6 bits (87), Expect = 0.010
Identities = 27/100 (27%), Positives = 37/100 (37%), Gaps = 6/100 (6%)
Query: 390 PAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAA 449
A+V+P +S + + T T T P A+ A P+ T PV + A
Sbjct: 107 NNAAVQPQNLSQLNNVA----VTSTLPTEPATVAPVRNASVP--TAERPAITRPVRAQAV 160
Query: 450 STPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAA 489
S P P A T +PA+TP P AA
Sbjct: 161 SEPAVEPKAAKTATATEAKVQTASPAQTPATPPAGKGAAA 200
>gnl|CDD|233365 TIGR01347, sucB, 2-oxoglutarate dehydrogenase complex
dihydrolipoamide succinyltransferase (E2 component).
This model describes the TCA cycle 2-oxoglutarate system
E2 component, dihydrolipoamide succinyltransferase. It
is closely related to the pyruvate dehydrogenase E2
component, dihydrolipoamide acetyltransferase. The seed
for this model includes mitochondrial and Gram-negative
bacterial forms. Mycobacterial candidates are highly
derived, differ in having and extra copy of the
lipoyl-binding domain at the N-terminus. They score
below the trusted cutoff, but above the noise cutoff and
above all examples of dihydrolipoamide acetyltransferase
[Energy metabolism, TCA cycle].
Length = 403
Score = 42.0 bits (99), Expect = 5e-04
Identities = 20/101 (19%), Positives = 28/101 (27%), Gaps = 4/101 (3%)
Query: 406 STPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAP----VD 461
+ A P ++ TP +AAA+P AA +P A +A V
Sbjct: 78 NDATAAPPAKSGEEKEETPAASAAAAPTAAANRPSLSPAARRLAKEHGIDLSAVPGTGVT 137
Query: 462 TPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEP 502
VT T A + A T
Sbjct: 138 GRVTKEDIIKKTEAPASAQQPAPAAAAKAPANFTRPEERVK 178
Score = 33.6 bits (77), Expect = 0.25
Identities = 21/88 (23%), Positives = 28/88 (31%), Gaps = 7/88 (7%)
Query: 426 ETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVAS-----APPTPAETPGA 480
E + A P S E+PAAS AA ++P A + PG
Sbjct: 75 EEGNDATAAPPAKSGEEKEETPAASAAAAPTAAANRPSLSPAARRLAKEHGIDLSAVPGT 134
Query: 481 --PEPVPSPAAPAPVETPSVPAEPTPTA 506
V E P+ +P P A
Sbjct: 135 GVTGRVTKEDIIKKTEAPASAQQPAPAA 162
Score = 31.2 bits (71), Expect = 1.1
Identities = 27/121 (22%), Positives = 32/121 (26%), Gaps = 17/121 (14%)
Query: 365 AEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTP 424
E + T+ K E PAAS P + PS P A
Sbjct: 75 EEGNDATAAPPAK----SGEEKEETPAASAAAAPTAAANRPSLSPAARRLAKEHGI---- 126
Query: 425 TETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPV 484
A P T V EAPA+ A+A PA E V
Sbjct: 127 ------DLSAVPGTGVTGRVTKEDIIKKTEAPASA---QQPAPAAAAKAPANFTRPEERV 177
Query: 485 P 485
Sbjct: 178 K 178
>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 620
Score = 42.3 bits (100), Expect = 5e-04
Identities = 13/78 (16%), Positives = 18/78 (23%), Gaps = 2/78 (2%)
Query: 435 APVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVE 494
A + + P + + TP P SP P P E
Sbjct: 363 AFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAAT--TPSPPPAKASPPIPVPAE 420
Query: 495 TPSVPAEPTPTASPVQTS 512
P A+ S
Sbjct: 421 PTEPSPTPPANAANAPPS 438
Score = 41.9 bits (99), Expect = 7e-04
Identities = 15/77 (19%), Positives = 18/77 (23%)
Query: 376 EKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAA 435
S P P + P TTP+P P
Sbjct: 362 SAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAEP 421
Query: 436 PVPSPTTPVESPAASTP 452
PSPT P + A
Sbjct: 422 TEPSPTPPANAANAPPS 438
Score = 41.9 bits (99), Expect = 8e-04
Identities = 12/76 (15%), Positives = 19/76 (25%)
Query: 428 AAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSP 487
A S +A + P + T +PP +P P P
Sbjct: 363 AFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAEPT 422
Query: 488 AAPAPVETPSVPAEPT 503
+ A P+
Sbjct: 423 EPSPTPPANAANAPPS 438
Score = 41.5 bits (98), Expect = 0.001
Identities = 15/80 (18%), Positives = 24/80 (30%), Gaps = 5/80 (6%)
Query: 408 PPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPV 467
++ + TP + P +P T +P +P PV
Sbjct: 363 AFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQA-----ATTPSPPPAKASPPIPV 417
Query: 468 ASAPPTPAETPGAPEPVPSP 487
+ P P+ TP A P
Sbjct: 418 PAEPTEPSPTPPANAANAPP 437
Score = 41.1 bits (97), Expect = 0.001
Identities = 20/79 (25%), Positives = 28/79 (35%)
Query: 430 ASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAA 489
++ A P P P A TP P TP P + AP +P+ ++
Sbjct: 516 SASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSS 575
Query: 490 PAPVETPSVPAEPTPTASP 508
P P PT +SP
Sbjct: 576 PPPPIPEEPTPSPTKDSSP 594
Score = 41.1 bits (97), Expect = 0.001
Identities = 25/80 (31%), Positives = 31/80 (38%), Gaps = 2/80 (2%)
Query: 418 PAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAET 477
P+ + A+A P P+P+ P S P AA TP P A A P
Sbjct: 361 PSAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAAT--TPSPPPAKASPPIPVP 418
Query: 478 PGAPEPVPSPAAPAPVETPS 497
EP P+P A A PS
Sbjct: 419 AEPTEPSPTPPANAANAPPS 438
Score = 40.7 bits (96), Expect = 0.002
Identities = 18/79 (22%), Positives = 24/79 (30%), Gaps = 4/79 (5%)
Query: 429 AASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPA 488
+ A P+ TP +P+ P+AP S PP A P
Sbjct: 365 ISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPP----IPVPAE 420
Query: 489 APAPVETPSVPAEPTPTAS 507
P TP A P +
Sbjct: 421 PTEPSPTPPANAANAPPSL 439
Score = 39.9 bits (94), Expect = 0.003
Identities = 18/86 (20%), Positives = 28/86 (32%), Gaps = 1/86 (1%)
Query: 410 VATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVAS 469
+ + + A P + + P P P P +P + P P A + P
Sbjct: 512 SQSGSASNTAKTPPPPQKSPPPPAPTP-PLPQPTATAPPPTPPPPPPTATQASSNAPAQI 570
Query: 470 APPTPAETPGAPEPVPSPAAPAPVET 495
+ P EP PSP + E
Sbjct: 571 PADSSPPPPIPEEPTPSPTKDSSPEE 596
Score = 38.4 bits (90), Expect = 0.009
Identities = 16/78 (20%), Positives = 21/78 (26%), Gaps = 2/78 (2%)
Query: 404 APSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTP 463
A + P P P+ A +AP SP +P PV
Sbjct: 363 AFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPP--PAKASPPIPVPAE 420
Query: 464 VTPVASAPPTPAETPGAP 481
T + PP A
Sbjct: 421 PTEPSPTPPANAANAPPS 438
Score = 38.4 bits (90), Expect = 0.010
Identities = 13/61 (21%), Positives = 16/61 (26%)
Query: 454 EAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQTSQ 513
A + + P P P AP +P TPS P PV
Sbjct: 362 SAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAEP 421
Query: 514 P 514
Sbjct: 422 T 422
Score = 37.6 bits (88), Expect = 0.016
Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 1/74 (1%)
Query: 354 SQTIEPSKPPAAEPSQTTSESTEKKESSPPTVPEVKP-AASVEPVPVSPVPAPSTPPVAT 412
++T P + P+ T + PPT P P A + +PA S+PP
Sbjct: 521 AKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSSPPPPI 580
Query: 413 PTETTPAPVSTPTE 426
P E TP+P +
Sbjct: 581 PEEPTPSPTKDSSP 594
Score = 36.9 bits (86), Expect = 0.027
Identities = 16/76 (21%), Positives = 23/76 (30%)
Query: 443 PVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEP 502
S A+ A P P P A P+ +T A P A A P
Sbjct: 363 AFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAEPT 422
Query: 503 TPTASPVQTSQPCAST 518
P+ +P + +
Sbjct: 423 EPSPTPPANAANAPPS 438
Score = 36.1 bits (84), Expect = 0.041
Identities = 20/71 (28%), Positives = 27/71 (38%), Gaps = 3/71 (4%)
Query: 444 VESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPT 503
+S +AS + P P +P P AP P P A P P+P P P T + P
Sbjct: 512 SQSGSASNTAKTPPPPQKSPPPP---APTPPLPQPTATAPPPTPPPPPPTATQASSNAPA 568
Query: 504 PTASPVQTSQP 514
+ P
Sbjct: 569 QIPADSSPPPP 579
Score = 35.7 bits (83), Expect = 0.053
Identities = 16/82 (19%), Positives = 21/82 (25%)
Query: 364 AAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVST 423
+ S + + T P P P P P PP AT +
Sbjct: 512 SQSGSASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIP 571
Query: 424 PTETAAASPVAAPVPSPTTPVE 445
+ P PSPT
Sbjct: 572 ADSSPPPPIPEEPTPSPTKDSS 593
Score = 34.9 bits (81), Expect = 0.096
Identities = 18/76 (23%), Positives = 22/76 (28%), Gaps = 2/76 (2%)
Query: 405 PSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAA--STPVEAPAAPVDT 462
S A P T A P PT P P A ++ P D+
Sbjct: 515 GSASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADS 574
Query: 463 PVTPVASAPPTPAETP 478
P PTP+ T
Sbjct: 575 SPPPPIPEEPTPSPTK 590
Score = 34.6 bits (80), Expect = 0.12
Identities = 11/72 (15%), Positives = 21/72 (29%)
Query: 354 SQTIEPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATP 413
+ + + S+P T + P+P P+ P +P
Sbjct: 367 EIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAEPTEPSP 426
Query: 414 TETTPAPVSTPT 425
T A + P+
Sbjct: 427 TPPANAANAPPS 438
Score = 34.6 bits (80), Expect = 0.13
Identities = 12/71 (16%), Positives = 20/71 (28%), Gaps = 5/71 (7%)
Query: 352 KISQTIEPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVA 411
+ T P+ P P Q ++ T++ ++P P P P P
Sbjct: 374 PANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKAS-----PPIPVPAEPTEPSPTP 428
Query: 412 TPTETTPAPVS 422
P
Sbjct: 429 PANAANAPPSL 439
Score = 29.5 bits (67), Expect = 5.1
Identities = 14/49 (28%), Positives = 19/49 (38%)
Query: 469 SAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQTSQPCAS 517
SA T P + P PA P+ P+ A P P T+ +S
Sbjct: 516 SASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASS 564
>gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit.
Transcription initiation factor IIA (TFIIA) is a
heterotrimer, the three subunits being known as alpha,
beta, and gamma, in order of molecular weight. The N and
C-terminal domains of the gamma subunit are represented
in pfam02268 and pfam02751, respectively. This family
represents the precursor that yields both the alpha and
beta subunits. The TFIIA heterotrimer is an essential
general transcription initiation factor for the
expression of genes transcribed by RNA polymerase II.
Together with TFIID, TFIIA binds to the promoter region;
this is the first step in the formation of a
pre-initiation complex (PIC). Binding of the rest of the
transcription machinery follows this step. After
initiation, the PIC does not completely dissociate from
the promoter. Some components, including TFIIA, remain
attached and re-initiate a subsequent round of
transcription.
Length = 332
Score = 41.7 bits (98), Expect = 6e-04
Identities = 25/130 (19%), Positives = 36/130 (27%), Gaps = 1/130 (0%)
Query: 386 PEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTET-AAASPVAAPVPSPTTPV 444
P + V +P P T + +TPT + AA P +P+
Sbjct: 51 PSPQAPPPVAQLPQPLPQPPPTQALQALPAGDQQQHNTPTGSPAANPPATFALPAGPAGP 110
Query: 445 ESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTP 504
+ PV P S PA+ + APA + PS
Sbjct: 111 TIQTEPGQLYPVQVPVMVTQNPANSPLDQPAQQRALQQLQQRYGAPASGQLPSQQQSAQK 170
Query: 505 TASPVQTSQP 514
QP
Sbjct: 171 NDESQLQQQP 180
Score = 32.8 bits (75), Expect = 0.37
Identities = 14/59 (23%), Positives = 18/59 (30%)
Query: 460 VDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQTSQPCAST 518
+ P P APP A+ P P A + TPT SP +
Sbjct: 45 AEFPWDPSPQAPPPVAQLPQPLPQPPPTQALQALPAGDQQQHNTPTGSPAANPPATFAL 103
>gnl|CDD|130706 TIGR01645, half-pint, poly-U binding splicing factor, half-pint
family. The proteins represented by this model contain
three RNA recognition motifs (rrm: pfam00076) and have
been characterized as poly-pyrimidine tract binding
proteins associated with RNA splicing factors. In the
case of PUF60 (GP|6176532), in complex with p54, and in
the presence of U2AF, facilitates association of U2
snRNP with pre-mRNA.
Length = 612
Score = 42.4 bits (99), Expect = 6e-04
Identities = 31/113 (27%), Positives = 43/113 (38%), Gaps = 6/113 (5%)
Query: 407 TPPVATPTETTPAPVSTPTETAAASPVA---APVPSPTTPVESPAASTPVEAPAA-PVDT 462
TPP A T + + AAA+ A A V P A +P ++ P D
Sbjct: 283 TPPDALLQPATVSAIPAAAAVAAAAATAKIMAAEAVAGAAVLGPRAQSPATPSSSLPTDI 342
Query: 463 PVTPVASAPPT-PAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQTSQP 514
V S+ E P P+ P+ P P+E P+ P P A P + P
Sbjct: 343 GNKAVVSSAKKEAEEVPPLPQAAPAVVKPGPMEIPT-PVPPPGLAIPSLVAPP 394
Score = 39.3 bits (91), Expect = 0.004
Identities = 38/137 (27%), Positives = 47/137 (34%), Gaps = 31/137 (22%)
Query: 382 PPTVPEVKPAASV------------EPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAA 429
P TV + AA+V E V + V P ATP+ + P + ++
Sbjct: 291 PATVSAIPAAAAVAAAAATAKIMAAEAVAGAAVLGPRAQSPATPSSSLPTDIGNKAVVSS 350
Query: 430 ASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEP--VPSP 487
A A VP P APA P+ PTP PG P V P
Sbjct: 351 AKKEAEEVPP-----------LPQAAPAVVKPGPMEI-----PTPVPPPGLAIPSLVAPP 394
Query: 488 AAPAPVE-TPSVPAEPT 503
AP E PS A P
Sbjct: 395 GLVAPTEINPSFLASPR 411
>gnl|CDD|218435 pfam05104, Rib_recp_KP_reg, Ribosome receptor lysine/proline rich
region. This highly conserved region is found towards
the C-terminus of the transmembrane domain. The function
is unclear.
Length = 151
Score = 40.0 bits (93), Expect = 7e-04
Identities = 33/123 (26%), Positives = 44/123 (35%), Gaps = 4/123 (3%)
Query: 352 KISQTIEPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVA 411
K+S+ SK +P+ E +E + V K V V+PVP PV
Sbjct: 32 KVSEKKGKSKKKEEKPNGKIPEHEPNQEVTEVEVIIEKEPVP--AVAVAPVPVAVVAPVV 89
Query: 412 TPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAAST-PVEAPAAPVDTPVTPVASA 470
P PV E A+ + P PSP + A P A A V + A
Sbjct: 90 APKPKKSQPVM-SQEKTASPQKSVPAPSPKEKKKKKVAKVEPAPAKAVAVPVLASKSAPV 148
Query: 471 PPT 473
P T
Sbjct: 149 PAT 151
Score = 38.0 bits (88), Expect = 0.003
Identities = 30/121 (24%), Positives = 39/121 (32%), Gaps = 10/121 (8%)
Query: 375 TEKKESSPP-TVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPV 433
++KKE P +PE +P V V V P P PV+ A P
Sbjct: 40 SKKKEEKPNGKIPEHEPNQEVTEVEVIIEKEP-----VPAVAVAPVPVAVVAPVVAPKPK 94
Query: 434 AAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPV 493
+ SP S P +P V V AP P + S +AP P
Sbjct: 95 KSQPVMSQEKTASPQKSVPAPSPKEKKKKKVAKVEPAPAKAVAVP----VLASKSAPVPA 150
Query: 494 E 494
Sbjct: 151 T 151
Score = 32.3 bits (73), Expect = 0.26
Identities = 21/102 (20%), Positives = 25/102 (24%), Gaps = 8/102 (7%)
Query: 415 ETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTP 474
E P T E V PV A PV AP P
Sbjct: 53 EHEPNQEVTEVEVIIEKEPVPAVAVAPVPVAVVA---PVVAP-----KPKKSQPVMSQEK 104
Query: 475 AETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQTSQPCA 516
+P P PSP + V P + + A
Sbjct: 105 TASPQKSVPAPSPKEKKKKKVAKVEPAPAKAVAVPVLASKSA 146
>gnl|CDD|223061 PHA03369, PHA03369, capsid maturational protease; Provisional.
Length = 663
Score = 41.5 bits (97), Expect = 9e-04
Identities = 38/174 (21%), Positives = 55/174 (31%), Gaps = 19/174 (10%)
Query: 351 KKISQTIEPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPV 410
KK+ + E S E + SE + ES AA++EP + AP+T
Sbjct: 486 KKLKEEQE-SLAKELEATAHKSEIKKIAESEFKNAGAKTAAANIEPNCSADAAAPATKRA 544
Query: 411 ATPT--------------ETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAP 456
T +P + T+ AA S T + A T +
Sbjct: 545 RPETKTELEAVVRFPYQIRNMESPAFVHSFTSTTLAAAAGQGSDTAEALAGAIETLLTQA 604
Query: 457 AAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQ 510
+A P + P + P P P AP P A T+ P Q
Sbjct: 605 SAQPAGLSLPAPAVPVNAS----TPASTPPPLAPQEPPQPGTSAPSLETSLPQQ 654
Score = 37.7 bits (87), Expect = 0.015
Identities = 26/122 (21%), Positives = 34/122 (27%), Gaps = 2/122 (1%)
Query: 392 ASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAAST 451
A E + + + APS A A T T A P P + +
Sbjct: 343 AHNEILKTASLTAPSRVLAAAAKVAVIAAPQTHTGPADRQRPQRPDGIPYSVPARSPMTA 402
Query: 452 PVEAPAAPVDT-PVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQ 510
P D V+P P + P PVP P P P A P +
Sbjct: 403 YPPVPQFCGDPGLVSPYNPQSPGTSYGPEPVGPVP-PQPTNPYVMPISMANMVYPGHPQE 461
Query: 511 TS 512
Sbjct: 462 HG 463
Score = 36.1 bits (83), Expect = 0.049
Identities = 20/96 (20%), Positives = 30/96 (31%), Gaps = 7/96 (7%)
Query: 354 SQTIEP-SKPPAAEPSQT-TSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVA 411
S+ + +K QT T + ++ P +P PA S P +
Sbjct: 357 SRVLAAAAKVAVIAAPQTHTGPADRQRPQRPDGIPYSVPARSPMTAYPPVPQFCGDPGLV 416
Query: 412 TPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESP 447
+P P + PV P PT P P
Sbjct: 417 SPYNPQS-----PGTSYGPEPVGPVPPQPTNPYVMP 447
Score = 33.8 bits (77), Expect = 0.25
Identities = 26/128 (20%), Positives = 31/128 (24%), Gaps = 15/128 (11%)
Query: 372 SESTEKKESSPPTVPEVKPAASVEPVPVSP----VPAPSTPPVATPTETT--PAPVSTPT 425
K S + AA V V +P PA P PA
Sbjct: 344 HNEILKTASLTAPSRVLAAAAKV-AVIAAPQTHTGPADRQRPQRPDGIPYSVPARSPMTA 402
Query: 426 ETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVP 485
P +SP S E PV PV P P P + +
Sbjct: 403 YPPVPQFCGDPGLVSPYNPQSPGTSYGPE--------PVGPVPPQPTNPYVMPISMANMV 454
Query: 486 SPAAPAPV 493
P P
Sbjct: 455 YPGHPQEH 462
Score = 30.0 bits (67), Expect = 4.0
Identities = 17/82 (20%), Positives = 23/82 (28%), Gaps = 4/82 (4%)
Query: 435 APVPSPTTPVESPAASTPVEAPAAPVDTPVT-PVASAPPTPAETPGAPEP-VPSPAAPAP 492
A + +P+ + AA V A P P + A P P P
Sbjct: 351 ASLTAPSRVLA-AAAKVAVIAAPQTHTGPADRQRPQRPDGIPYSVPARSPMTAYPPVPQF 409
Query: 493 VETPSVPAEPTPTASPVQTSQP 514
P P SP + P
Sbjct: 410 CGDP-GLVSPYNPQSPGTSYGP 430
>gnl|CDD|166942 PRK00404, tatB, sec-independent translocase; Provisional.
Length = 141
Score = 39.4 bits (92), Expect = 0.001
Identities = 21/70 (30%), Positives = 27/70 (38%), Gaps = 3/70 (4%)
Query: 430 ASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAA 489
A + AP+ P P P ++PA V TP A P PA P P +P
Sbjct: 75 ARKILAPLTPPAPP--EPVTPPTAQSPAPAVPTPPPTSTPAVP-PAPAAAVPAPAAAPPP 131
Query: 490 PAPVETPSVP 499
P + P P
Sbjct: 132 SDPPQPPRAP 141
Score = 37.1 bits (86), Expect = 0.005
Identities = 17/60 (28%), Positives = 22/60 (36%)
Query: 388 VKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESP 447
+ P A EPV +P+ P +TPA P A A P P P +P
Sbjct: 82 LTPPAPPEPVTPPTAQSPAPAVPTPPPTSTPAVPPAPAAAVPAPAAAPPPSDPPQPPRAP 141
Score = 36.0 bits (83), Expect = 0.013
Identities = 26/78 (33%), Positives = 30/78 (38%), Gaps = 16/78 (20%)
Query: 404 APSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTP 463
AP TPP A P TP +P P +TP PA + V APAA
Sbjct: 80 APLTPP-APPEPVTPPTAQSPAPAVPTPP------PTSTPAVPPAPAAAVPAPAA----- 127
Query: 464 VTPVASAPPTPAETPGAP 481
A P P + P AP
Sbjct: 128 ----APPPSDPPQPPRAP 141
Score = 36.0 bits (83), Expect = 0.014
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Query: 400 SPVPAPSTP-PVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVE--SPAASTPVEAP 456
+P+ P+ P PV PT +PAP + PT ++P P P+ P +P S P + P
Sbjct: 80 APLTPPAPPEPVTPPTAQSPAP-AVPTPPPTSTPAVPPAPAAAVPAPAAAPPPSDPPQPP 138
Query: 457 AAP 459
AP
Sbjct: 139 RAP 141
Score = 33.3 bits (76), Expect = 0.12
Identities = 21/61 (34%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
Query: 454 EAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQTSQ 513
E A + P+TP APP P P A P P+ P P TP+VP P +
Sbjct: 72 EQEARKILAPLTP--PAPPEPVTPPTAQSPAPAVPTPPPTSTPAVPPAPAAAVPAPAAAP 129
Query: 514 P 514
P
Sbjct: 130 P 130
Score = 32.5 bits (74), Expect = 0.18
Identities = 20/66 (30%), Positives = 23/66 (34%), Gaps = 5/66 (7%)
Query: 451 TPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQ 510
P+ PA P PVTP + P PA P P A P +VPA
Sbjct: 80 APLTPPAPP--EPVTPPTAQSPAPAVPTPPPTSTP---AVPPAPAAAVPAPAAAPPPSDP 134
Query: 511 TSQPCA 516
P A
Sbjct: 135 PQPPRA 140
Score = 29.8 bits (67), Expect = 1.6
Identities = 15/53 (28%), Positives = 19/53 (35%), Gaps = 1/53 (1%)
Query: 378 KESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAA 430
+ +PPT PA P +P P P A P P S P + A
Sbjct: 89 EPVTPPTAQSPAPAVPTPPPTSTPAVPP-APAAAVPAPAAAPPPSDPPQPPRA 140
>gnl|CDD|217469 pfam03276, Gag_spuma, Spumavirus gag protein.
Length = 582
Score = 41.4 bits (97), Expect = 0.001
Identities = 22/87 (25%), Positives = 31/87 (35%), Gaps = 2/87 (2%)
Query: 429 AASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTP-VASAPPTPAETPGAPEPVPSP 487
P A P P++ P S+ + A+ P V+ P P +P P P
Sbjct: 180 GNIPGAIQPPPPSSLPGLPPGSSSLAPSASSTPGNRLPRVSFNPFLPGPSPAQP-SAPPA 238
Query: 488 AAPAPVETPSVPAEPTPTASPVQTSQP 514
+ PAP P + P P Q P
Sbjct: 239 SIPAPPIPPVIQYVAPPPVPPPQPIIP 265
Score = 41.4 bits (97), Expect = 0.001
Identities = 21/88 (23%), Positives = 33/88 (37%), Gaps = 5/88 (5%)
Query: 396 PVPVSPVPAPSTPPVATPTETTP-APVSTPTETAAASPVA-APVPSPTTPVESPAASTPV 453
+P + P P + P ++ AP ++ T V+ P +P + A P
Sbjct: 181 NIPGAIQPPPPSSLPGLPPGSSSLAPSASSTPGNRLPRVSFNPFLPGPSPAQPSA---PP 237
Query: 454 EAPAAPVDTPVTPVASAPPTPAETPGAP 481
+ AP PV + PP P P P
Sbjct: 238 ASIPAPPIPPVIQYVAPPPVPPPQPIIP 265
Score = 33.4 bits (76), Expect = 0.34
Identities = 33/113 (29%), Positives = 42/113 (37%), Gaps = 6/113 (5%)
Query: 359 PSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTP 418
PP + S+ S+ T P S P P PA + P A+ P
Sbjct: 186 IQPPPPSSLPGLPPGSSSLAPSASSTPGNRLPRVSFNPFLPGPSPAQPSAPPASI----P 241
Query: 419 APVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAP 471
AP P A P P P P P++ A T E PA P D P+ +AP
Sbjct: 242 APPIPPVIQYVAPP-PVPPPQPIIPIQHIRAVTG-ETPANPRDIPLWLGRNAP 292
Score = 29.9 bits (67), Expect = 3.6
Identities = 25/92 (27%), Positives = 28/92 (30%), Gaps = 11/92 (11%)
Query: 409 PVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVA 468
P P P S+ S AP S T P S P P +P P
Sbjct: 179 GGNIPGAIQPPPPSSLPGLPPGSSSLAPSASSTPGNRLPRVSFN---PFLPGPSPAQP-- 233
Query: 469 SAPPTPAETPGAPEPVPSPAAPAPVETPSVPA 500
SAPP P P + A P VP
Sbjct: 234 SAPPASIPAPPIPPVIQYVAP------PPVPP 259
>gnl|CDD|224343 COG1426, COG1426, Predicted transcriptional regulator contains
Xre-like HTH domain [Function unknown].
Length = 284
Score = 40.9 bits (96), Expect = 0.001
Identities = 23/131 (17%), Positives = 34/131 (25%), Gaps = 16/131 (12%)
Query: 369 QTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETA 428
Q E +V V V ++ + T+ +P S T
Sbjct: 126 QAWLAQEEPPTLPDQSVASVSQ-------NSQDVSLATSSTTPSEGTTSASPSSATTSFT 178
Query: 429 AASPVAAPVPSPTTPVE----SPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPV 484
APV +PT PAA + A T T G+
Sbjct: 179 PTVTAIAPVVAPTAKPVTVPKQPAADLAASSTAPAAKEMATGQ-----EAVPTAGSGVTT 233
Query: 485 PSPAAPAPVET 495
+ + A V
Sbjct: 234 VAGKSAALVIN 244
Score = 31.3 bits (71), Expect = 1.1
Identities = 24/117 (20%), Positives = 38/117 (32%), Gaps = 8/117 (6%)
Query: 405 PSTPPVATPTETTP--APVSTPTETAAASPVA-APVPSPTTPVESPAASTPVEAPAAPVD 461
PT A VS ++ + + + P T+ SP+++T P
Sbjct: 127 AWLAQEEPPTLPDQSVASVSQNSQDVSLATSSTTPSEGTTSA--SPSSATTSFTPTVTAI 184
Query: 462 TPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQTSQPCAST 518
PV + P T + P A S A A + E PTA + +
Sbjct: 185 APVVAPTAKPVTVPKQPAADLAASSTAPAAKE--MATGQEAVPTA-GSGVTTVAGKS 238
>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1. Members
of this family are necessary for accurate chromosome
transmission during cell division.
Length = 804
Score = 41.3 bits (97), Expect = 0.001
Identities = 37/169 (21%), Positives = 52/169 (30%), Gaps = 17/169 (10%)
Query: 358 EPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAA--------SVEPVPVSPVPAPSTPP 409
+P P +P + + K E PP PE +P S+E V P
Sbjct: 112 DPEYIPDLQPDPSLWGTAPKPEPQPPQAPESQPQPQTPAQKMLSLEEVEAQLQQRQQAPQ 171
Query: 410 VATPTETTPAPVSTPTETAAASPVAAPVPS--PTTPVESPAASTPVEAPAAPVDTPVTPV 467
+ P + P + A P P P P P + AP +
Sbjct: 172 LPQPPQQVLPQGMPPRQAAFPQQGPPEQPPGYPQPPQGHPEQVQPQQFLPAP-----SQA 226
Query: 468 ASAPPTPAETPGAPEPVPSPAAPAPVET--PSVPAEPTPTASPVQTSQP 514
+ PP P + P P P+ P P + P P P P Q
Sbjct: 227 PAQPPLPPQLPQQPPPLQQPQFPGLSQQMPPPPPQPPQQQQQPPQPQAQ 275
Score = 36.3 bits (84), Expect = 0.038
Identities = 32/181 (17%), Positives = 48/181 (26%), Gaps = 13/181 (7%)
Query: 346 WDNIWKK--ISQTIEPSKPPAAEPSQT-----TSESTEKKESSPPTVPEVKPAASVEPVP 398
W K S+P P+Q E+ ++ P +P+ + +P
Sbjct: 126 WGTAPKPEPQPPQAPESQPQPQTPAQKMLSLEEVEAQLQQRQQAPQLPQPPQQVLPQGMP 185
Query: 399 VSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAA 458
P P P P P + + AP +P P P
Sbjct: 186 PRQAAFPQQGPPEQPPGYPQPPQGHPEQVQPQQFLPAPSQAPAQPPLPPQLPQQPPPLQQ 245
Query: 459 PVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPT-----PTASPVQTSQ 513
P ++ PP P +P A P P P+ P P Q
Sbjct: 246 PQFPGLSQQM-PPPPPQPPQQQQQPPQPQAQPPPQNQPTPHPGLPQGQNAPLPPPQQPQL 304
Query: 514 P 514
Sbjct: 305 L 305
Score = 35.9 bits (83), Expect = 0.061
Identities = 32/167 (19%), Positives = 44/167 (26%), Gaps = 19/167 (11%)
Query: 355 QTIEPSKPPAAEPSQTTSESTEKKESSPP---TVPEVKPAASVEPVPVSPVPAPSTPPVA 411
Q + + + ST S T PE P +P P P P
Sbjct: 79 QNAPGAPSVGPDSDLSQKTSTFSPCQSGYEASTDPEYIPDLQPDPSLWGTAPKPEPQPPQ 138
Query: 412 TPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAP 471
P E+ P P + + + V A + A + P V P P
Sbjct: 139 AP-ESQPQPQTPAQKMLSLEEVEAQLQQR------QQAPQLPQPPQ-----QVLPQGMPP 186
Query: 472 PTPAETPGAPEPVPSPAAPAPVETPSVPAEPT----PTASPVQTSQP 514
A P P P P P+ +P Q P
Sbjct: 187 RQAAFPQQGPPEQPPGYPQPPQGHPEQVQPQQFLPAPSQAPAQPPLP 233
Score = 34.7 bits (80), Expect = 0.15
Identities = 26/159 (16%), Positives = 37/159 (23%), Gaps = 8/159 (5%)
Query: 354 SQTIEPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATP 413
+ K P Q+ E+ + + P+ P P + P
Sbjct: 89 PDSDLSQKTSTFSPCQSGYEA--STDPEYIPDLQPDPSLWGTAPKPEPQPPQAPESQPQP 146
Query: 414 TETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPP- 472
+S E A P P P P P P PP
Sbjct: 147 QTPAQKMLS-LEEVEAQLQQRQQAPQLPQP---PQQVLPQGMPPRQAAFPQQGPPEQPPG 202
Query: 473 -TPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQ 510
+ P PAP + P+ P P
Sbjct: 203 YPQPPQGHPEQVQPQQFLPAPSQAPAQPPLPPQLPQQPP 241
>gnl|CDD|236733 PRK10672, PRK10672, rare lipoprotein A; Provisional.
Length = 361
Score = 40.8 bits (96), Expect = 0.001
Identities = 21/81 (25%), Positives = 33/81 (40%), Gaps = 1/81 (1%)
Query: 390 PAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAA 449
P+ P P V S + + + T APV++ A + +A V + P + +
Sbjct: 207 PSVQPAPAPQGDVLPVSNSTLKS-EDPTGAPVTSSGFLGAPTTLAPGVLEGSEPTPTAPS 265
Query: 450 STPVEAPAAPVDTPVTPVASA 470
S P APAA +SA
Sbjct: 266 SAPATAPAAAAPQAAATSSSA 286
Score = 37.7 bits (88), Expect = 0.011
Identities = 23/88 (26%), Positives = 31/88 (35%), Gaps = 11/88 (12%)
Query: 430 ASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAP------EP 483
+P P P+P V + ST D PV S+ A T AP EP
Sbjct: 205 GTPSVQPAPAPQGDVLPVSNSTL-----KSEDPTGAPVTSSGFLGAPTTLAPGVLEGSEP 259
Query: 484 VPSPAAPAPVETPSVPAEPTPTASPVQT 511
P+ + AP P+ A S +
Sbjct: 260 TPTAPSSAPATAPAAAAPQAAATSSSAS 287
Score = 35.0 bits (81), Expect = 0.088
Identities = 22/85 (25%), Positives = 31/85 (36%), Gaps = 7/85 (8%)
Query: 440 PTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPV------PSPAAPAPV 493
P P S TP PA V PV+++ + GAP P+ AP +
Sbjct: 195 PARPDLSGGMGTPSVQPAPAPQGDVLPVSNSTLKSEDPTGAPVTSSGFLGAPTTLAPGVL 254
Query: 494 ETPSVPAEPTPTASPVQTSQPCAST 518
E S P P+++P A
Sbjct: 255 EG-SEPTPTAPSSAPATAPAAAAPQ 278
Score = 31.6 bits (72), Expect = 1.1
Identities = 17/84 (20%), Positives = 27/84 (32%), Gaps = 6/84 (7%)
Query: 380 SSPPTVPEVKPAASVEPV---PVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAP 436
+P P P V PV + P ++ P ++ + AP
Sbjct: 205 GTPSVQPAPAPQGDVLPVSNSTLKSEDPTGAPVTSSGFLGAPTTLAPGVLEGSEPTPTAP 264
Query: 437 VPSPTTPVESPAASTPVEAPAAPV 460
+P T PAA+ P A +
Sbjct: 265 SSAPATA---PAAAAPQAAATSSS 285
Score = 31.2 bits (71), Expect = 1.3
Identities = 24/103 (23%), Positives = 36/103 (34%), Gaps = 10/103 (9%)
Query: 405 PSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPV 464
P+ P ++ T P+ P PV+ P +P S+ AP
Sbjct: 195 PARPDLSGGMGT-PSVQPAPAPQGDVLPVSNSTLKSEDPTGAPVTSSGF--LGAPTTLAP 251
Query: 465 TPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTAS 507
+ + PTP AP P+ A PA A + +AS
Sbjct: 252 GVLEGSEPTPT----APSSAPATA-PAAA--APQAAATSSSAS 287
Score = 30.0 bits (68), Expect = 3.1
Identities = 20/93 (21%), Positives = 32/93 (34%), Gaps = 5/93 (5%)
Query: 348 NIWKKISQTIEPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASV-EPVPVSPVPAPS 406
++ + P S ST K S PT V + + P ++P
Sbjct: 199 DLSGGMGTPSVQPAPAPQGDVLPVSNSTLK--SEDPTGAPVTSSGFLGAPTTLAPGVLEG 256
Query: 407 TPPVATPTETTPAPVSTPTETAAASPVAAPVPS 439
+ P TPT + AP + P A + + S
Sbjct: 257 SEP--TPTAPSSAPATAPAAAAPQAAATSSSAS 287
>gnl|CDD|184927 PRK14963, PRK14963, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 504
Score = 40.6 bits (95), Expect = 0.002
Identities = 22/88 (25%), Positives = 29/88 (32%), Gaps = 2/88 (2%)
Query: 414 TETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPT 473
A P+E AA AP P+ T + +AP T + P
Sbjct: 336 LHALLALGGAPSEGVAAVAPPAPAPADLTQRLNRLEKEVRSLRSAPT-AAATAAGAPLPD 394
Query: 474 PAETP-GAPEPVPSPAAPAPVETPSVPA 500
P G P P P+ +A AP A
Sbjct: 395 FDPRPRGPPAPEPARSAEAPPLVAPAAA 422
Score = 37.9 bits (88), Expect = 0.011
Identities = 22/87 (25%), Positives = 29/87 (33%), Gaps = 3/87 (3%)
Query: 434 AAPVPSPTTPVESPAASTP--VEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAA-P 490
PS +P A P + ++ V + SAP A GAP P P
Sbjct: 342 LGGAPSEGVAAVAPPAPAPADLTQRLNRLEKEVRSLRSAPTAAATAAGAPLPDFDPRPRG 401
Query: 491 APVETPSVPAEPTPTASPVQTSQPCAS 517
P P+ AE P +P A
Sbjct: 402 PPAPEPARSAEAPPLVAPAAAPAGLAL 428
Score = 35.6 bits (82), Expect = 0.056
Identities = 16/80 (20%), Positives = 23/80 (28%), Gaps = 3/80 (3%)
Query: 385 VPEVKPAASVEPVPVSPVPAPSTPPVAT-PTETTPAPVSTPTETAAASPVAAPVPSPTTP 443
V V P A P ++ V + + T A + P P+P
Sbjct: 350 VAAVAPPAPA-PADLTQRLNRLEKEVRSLRSAPTAAATAAGAPLPDFDPRPRGPPAPEPA 408
Query: 444 VESPAASTPVEAPAAPVDTP 463
+ A V AAP
Sbjct: 409 RSAEAPP-LVAPAAAPAGLA 427
Score = 34.8 bits (80), Expect = 0.099
Identities = 24/97 (24%), Positives = 30/97 (30%), Gaps = 16/97 (16%)
Query: 397 VPVSPVPAPSTPPVATPTET-TPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEA 455
P V A + P A T + + ++P AA T A
Sbjct: 345 APSEGVAAVAPPAPAPADLTQRLNRLEKEVRSLRSAPTAAA--------------TAAGA 390
Query: 456 PAAPVD-TPVTPVASAPPTPAETPGAPEPVPSPAAPA 491
P D P P A P AE P P +PA A
Sbjct: 391 PLPDFDPRPRGPPAPEPARSAEAPPLVAPAAAPAGLA 427
Score = 32.1 bits (73), Expect = 0.81
Identities = 13/71 (18%), Positives = 19/71 (26%)
Query: 362 PPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPV 421
E S T ++ +P+ P P P A + P VA +
Sbjct: 369 RLEKEVRSLRSAPTAAATAAGAPLPDFDPRPRGPPAPEPARSAEAPPLVAPAAAPAGLAL 428
Query: 422 STPTETAAASP 432
AA
Sbjct: 429 RWRDVLAALKM 439
Score = 31.7 bits (72), Expect = 0.89
Identities = 20/84 (23%), Positives = 25/84 (29%), Gaps = 3/84 (3%)
Query: 391 AASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPT---TPVESP 447
A E V PAP+ + V + A+ AA P P P P
Sbjct: 344 GAPSEGVAAVAPPAPAPADLTQRLNRLEKEVRSLRSAPTAAATAAGAPLPDFDPRPRGPP 403
Query: 448 AASTPVEAPAAPVDTPVTPVASAP 471
A A A P+ P A
Sbjct: 404 APEPARSAEAPPLVAPAAAPAGLA 427
Score = 31.7 bits (72), Expect = 0.90
Identities = 17/88 (19%), Positives = 27/88 (30%), Gaps = 13/88 (14%)
Query: 362 PPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPV 421
A P+ ++ T++ V + +A + P P + P P
Sbjct: 351 AAVAPPAPAPADLTQRLNRLEKEVRSL-RSAPTAAATAAGAPLP---------DFDPRPR 400
Query: 422 STPTETAAASPVAAPVPSPTTPVESPAA 449
P A S A P P +PA
Sbjct: 401 GPPAPEPARS---AEAPPLVAPAAAPAG 425
Score = 29.8 bits (67), Expect = 4.4
Identities = 19/80 (23%), Positives = 28/80 (35%), Gaps = 3/80 (3%)
Query: 354 SQTIEPSKPPAAEPSQTTSE--STEKKESSPPTVPEVKPAASVEPVP-VSPVPAPSTPPV 410
S+ + PPA P+ T EK+ S + P A+ P+P P P P
Sbjct: 347 SEGVAAVAPPAPAPADLTQRLNRLEKEVRSLRSAPTAAATAAGAPLPDFDPRPRGPPAPE 406
Query: 411 ATPTETTPAPVSTPTETAAA 430
+ P V+ A
Sbjct: 407 PARSAEAPPLVAPAAAPAGL 426
>gnl|CDD|234022 TIGR02813, omega_3_PfaA, polyketide-type polyunsaturated fatty acid
synthase PfaA. Members of the seed for this alignment
are involved in omega-3 polyunsaturated fatty acid
biosynthesis, such as the protein PfaA from the
eicosapentaenoic acid biosynthesis operon in
Photobacterium profundum strain SS9. PfaA is encoded
together with PfaB, PfaC, and PfaD, and the functions of
the individual polypeptides have not yet been described.
More distant homologs of PfaA, also included with the
reach of this model, appear to be involved in
polyketide-like biosynthetic mechanisms of
polyunsaturated fatty acid biosynthesis, an alternative
to the more familiar iterated mechanism of chain
extension and desaturation, and in most cases are encoded
near genes for homologs of PfaB, PfaC, and/or PfaD.
Length = 2582
Score = 41.1 bits (96), Expect = 0.002
Identities = 19/99 (19%), Positives = 34/99 (34%), Gaps = 6/99 (6%)
Query: 426 ETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVD--TPVTPVASAPPTPAETP---GA 480
+T + +P+ + ++S PV V PV P +PP + P A
Sbjct: 1111 QTDSNIVKLSPLATQAPVIKSVVTQAPVVQVTISVAPAAPVLPAVVSPPVVSAAPAQSVA 1170
Query: 481 PEPVPSPAAPAPVETPSV-PAEPTPTASPVQTSQPCAST 518
+P A P+ P + P+ + Q +
Sbjct: 1171 TAVAMAPVAEVPIAVPVQQSVDYMPSVAQAAAPQASVND 1209
Score = 39.6 bits (92), Expect = 0.004
Identities = 30/106 (28%), Positives = 36/106 (33%), Gaps = 11/106 (10%)
Query: 410 VATPTETTPAPV-STPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVA 468
V T APV + A V +P PV S PV + AP + T VA
Sbjct: 1117 VKLSPLATQAPVIKSVVTQAPVVQVTIS-VAPAAPVLPAVVSPPVVSA-APAQSVATAVA 1174
Query: 469 SAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQTSQP 514
AP P+ P + PSV P AS V S
Sbjct: 1175 MAPVAEV-------PIAVPVQQSVDYMPSVAQAAAPQAS-VNDSAI 1212
Score = 39.2 bits (91), Expect = 0.006
Identities = 23/79 (29%), Positives = 32/79 (40%), Gaps = 6/79 (7%)
Query: 386 PEVKPAASVEP-VPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPV 444
P V+ SV P PV +PA +PPV + + A P+A PV +
Sbjct: 1137 PVVQVTISVAPAAPV--LPAVVSPPVVSAAPAQSVATAVAMAPVAEVPIAVPVQQSVDYM 1194
Query: 445 ESPAASTPVEAPAAPVDTP 463
S A + AP A V+
Sbjct: 1195 PSVAQA---AAPQASVNDS 1210
Score = 37.7 bits (87), Expect = 0.020
Identities = 28/110 (25%), Positives = 36/110 (32%), Gaps = 6/110 (5%)
Query: 406 STPPVATPTETTPAPVSTPT-ETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPV 464
+T + T APV T A A+PV V SP +PA S A PV
Sbjct: 1123 ATQAPVIKSVVTQAPVVQVTISVAPAAPVLPAVVSPPVVSAAPAQSVATAVAMA----PV 1178
Query: 465 TPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQTSQP 514
V A P P + A A V + + +T P
Sbjct: 1179 AEVPIAVPVQQSVDYMPSVAQAAAPQASVNDSA-IQQVMMEVVAEKTGYP 1227
Score = 36.5 bits (84), Expect = 0.042
Identities = 28/107 (26%), Positives = 37/107 (34%), Gaps = 8/107 (7%)
Query: 380 SSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPS 439
+ P + V A V V +S PA PV + P + P ++ A + APV
Sbjct: 1124 TQAPVIKSVVTQAPVVQVTISVAPAA---PVLPAVVSPPVVSAAPAQSVATAVAMAPVAE 1180
Query: 440 P--TTPVESPAASTPVEAPAAPVDTPVTPVASAPP---TPAETPGAP 481
PV+ P A AA V A AE G P
Sbjct: 1181 VPIAVPVQQSVDYMPSVAQAAAPQASVNDSAIQQVMMEVVAEKTGYP 1227
Score = 32.7 bits (74), Expect = 0.56
Identities = 30/139 (21%), Positives = 45/139 (32%), Gaps = 7/139 (5%)
Query: 327 HIHRQHWEEGHIDYLGKDSWDNIWKKISQTIEPSKPPAAEPSQTTSESTEKKESSPPTVP 386
H H+ + H YL + NI K ++ P + T + + S P P
Sbjct: 1094 HQHQAETLKVHEQYLNLQTDSNIVKLSPLA---TQAPVIKSVVTQAPVVQVTISVAPAAP 1150
Query: 387 EVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPT-ETAAASPVAAPVPSPTTPVE 445
+ V P VS PA S P++ P ++ P A +P V
Sbjct: 1151 VLPAV--VSPPVVSAAPAQSVATAVAMAPVAEVPIAVPVQQSVDYMPSVAQAAAPQASVN 1208
Query: 446 SPAASTP-VEAPAAPVDTP 463
A +E A P
Sbjct: 1209 DSAIQQVMMEVVAEKTGYP 1227
>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 576
Score = 40.5 bits (95), Expect = 0.002
Identities = 27/81 (33%), Positives = 31/81 (38%), Gaps = 14/81 (17%)
Query: 406 STPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVT 465
PP A TPA + P P AAP P P PAA+ P APA P
Sbjct: 382 PAPPSAAWGAPTPAAPAAPP------PAAAPPVPPAAP-ARPAAARPAPAPAPPA----- 429
Query: 466 PVASAPPTPAETPGAPEPVPS 486
A+APP + P A
Sbjct: 430 --AAAPPARSADPAAAASAGD 448
Score = 39.3 bits (92), Expect = 0.004
Identities = 21/67 (31%), Positives = 25/67 (37%), Gaps = 3/67 (4%)
Query: 392 ASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAAST 451
A P P P+ P P P P + P AAA P AP P +P A +
Sbjct: 381 APAPPSAAWGAPTPAAPAAPPPAAAPPVPPAAPARPAAARPAPAPAPP---AAAAPPARS 437
Query: 452 PVEAPAA 458
A AA
Sbjct: 438 ADPAAAA 444
Score = 39.3 bits (92), Expect = 0.004
Identities = 19/67 (28%), Positives = 23/67 (34%), Gaps = 2/67 (2%)
Query: 437 VPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETP 496
P+P + AP PV P A A PA AP P P AA P +
Sbjct: 381 APAPPSAAWGAPTPAAPAAPPPAAAPPVPPAAPAR--PAAARPAPAPAPPAAAAPPARSA 438
Query: 497 SVPAEPT 503
A +
Sbjct: 439 DPAAAAS 445
Score = 39.0 bits (91), Expect = 0.006
Identities = 21/63 (33%), Positives = 25/63 (39%), Gaps = 6/63 (9%)
Query: 453 VEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPA-----APAPVETPSVPAEPTPTAS 507
AP + TP A A P PA P P P+ APAP P+ A P +A
Sbjct: 381 APAPPSAAWGAPTPAAPAAPPPAAAPPVPPAAPARPAAARPAPAPAP-PAAAAPPARSAD 439
Query: 508 PVQ 510
P
Sbjct: 440 PAA 442
Score = 38.6 bits (90), Expect = 0.008
Identities = 22/65 (33%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
Query: 446 SPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAP---EPVPSPAAPAPVETPSVPAEP 502
+PA + P P A+APP P P P P P+PA PA P+ A+P
Sbjct: 381 APAPPSAAWGAPTPAAPAAPPPAAAPPVPPAAPARPAAARPAPAPAPPAAAAPPARSADP 440
Query: 503 TPTAS 507
AS
Sbjct: 441 AAAAS 445
Score = 37.0 bits (86), Expect = 0.021
Identities = 22/75 (29%), Positives = 25/75 (33%), Gaps = 11/75 (14%)
Query: 417 TPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAE 476
PAP S + AAP P+ PV A + P A AP P P
Sbjct: 381 APAPPSAAWGAPTPAAPAAPPPAAAPPVPPAAPARPAAARPAP-----------APAPPA 429
Query: 477 TPGAPEPVPSPAAPA 491
P PAA A
Sbjct: 430 AAAPPARSADPAAAA 444
Score = 35.9 bits (83), Expect = 0.050
Identities = 20/76 (26%), Positives = 25/76 (32%), Gaps = 12/76 (15%)
Query: 455 APAAPVD------------TPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEP 502
AP APV P P A+ P AP P +P P A P
Sbjct: 362 APGAPVSELLDRLEALERGAPAPPSAAWGAPTPAAPAAPPPAAAPPVPPAAPARPAAARP 421
Query: 503 TPTASPVQTSQPCAST 518
P +P + P A +
Sbjct: 422 APAPAPPAAAAPPARS 437
Score = 32.8 bits (75), Expect = 0.48
Identities = 14/70 (20%), Positives = 22/70 (31%), Gaps = 1/70 (1%)
Query: 368 SQTTSESTEKKESSPPTVPEVKPAASVEPV-PVSPVPAPSTPPVATPTETTPAPVSTPTE 426
+ + + P P P A+ PV P +P + P P A +
Sbjct: 379 RGAPAPPSAAWGAPTPAAPAAPPPAAAPPVPPAAPARPAAARPAPAPAPPAAAAPPARSA 438
Query: 427 TAAASPVAAP 436
AA+ A
Sbjct: 439 DPAAAASAGD 448
Score = 32.8 bits (75), Expect = 0.52
Identities = 17/65 (26%), Positives = 23/65 (35%), Gaps = 3/65 (4%)
Query: 364 AAEPSQTTSESTEKKESSPPT---VPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAP 420
A P + + P P V PAA P P PAP+ P A P + P
Sbjct: 381 APAPPSAAWGAPTPAAPAAPPPAAAPPVPPAAPARPAAARPAPAPAPPAAAAPPARSADP 440
Query: 421 VSTPT 425
+ +
Sbjct: 441 AAAAS 445
Score = 32.0 bits (73), Expect = 0.82
Identities = 21/64 (32%), Positives = 23/64 (35%), Gaps = 2/64 (3%)
Query: 397 VPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAA-PVPSPTTPVESPAASTPVEA 455
P P A P A P PA A A P AA P P+P P + A
Sbjct: 381 APAPPSAAWGAPTPAAPAAPPPAAAPPVPPAAPARPAAARPAPAPAPP-AAAAPPARSAD 439
Query: 456 PAAP 459
PAA
Sbjct: 440 PAAA 443
Score = 31.6 bits (72), Expect = 1.00
Identities = 16/70 (22%), Positives = 18/70 (25%), Gaps = 11/70 (15%)
Query: 380 SSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPS 439
PAA P PP A P AP A +P +
Sbjct: 384 PPSAAWGAPTPAAPAAP-----------PPAAAPPVPPAAPARPAAARPAPAPAPPAAAA 432
Query: 440 PTTPVESPAA 449
P PAA
Sbjct: 433 PPARSADPAA 442
Score = 31.6 bits (72), Expect = 1.3
Identities = 18/73 (24%), Positives = 22/73 (30%), Gaps = 6/73 (8%)
Query: 380 SSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPS 439
+ P P P AP PP A P P AAA+P A
Sbjct: 381 APAPPSAAWGAPTPAAPAAPPPAAAPPVPPAAPARPAAARPAPAPAPPAAAAPPAR---- 436
Query: 440 PTTPVESPAASTP 452
+ + AAS
Sbjct: 437 --SADPAAAASAG 447
Score = 30.9 bits (70), Expect = 2.0
Identities = 11/70 (15%), Positives = 21/70 (30%), Gaps = 1/70 (1%)
Query: 351 KKISQTIEPSKPPAAEPSQTTSESTEKKESSPP-TVPEVKPAASVEPVPVSPVPAPSTPP 409
+ + + A + + ++PP A+ P P PA + PP
Sbjct: 375 EALERGAPAPPSAAWGAPTPAAPAAPPPAAAPPVPPAAPARPAAARPAPAPAPPAAAAPP 434
Query: 410 VATPTETTPA 419
+ A
Sbjct: 435 ARSADPAAAA 444
>gnl|CDD|236792 PRK10905, PRK10905, cell division protein DamX; Validated.
Length = 328
Score = 40.3 bits (94), Expect = 0.002
Identities = 20/88 (22%), Positives = 29/88 (32%)
Query: 364 AAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVST 423
T+ K+ P P+ +PV +P PVA+
Sbjct: 146 QTAERPATTRPARKQAVIEPKKPQATAKTEPKPVAQTPKRTEPAAPVASTKAPAATSTPA 205
Query: 424 PTETAAASPVAAPVPSPTTPVESPAAST 451
P ETA +PV P+ TT + T
Sbjct: 206 PKETATTAPVQTASPAQTTATPAAGGKT 233
Score = 38.8 bits (90), Expect = 0.005
Identities = 26/114 (22%), Positives = 39/114 (34%), Gaps = 9/114 (7%)
Query: 395 EPVPVSPVPAPSTPPVATPTETTP-APVSTPTETAAASPVAAPVPSPTTPVESPAASTPV 453
EP V+PV + T+T + P A P + T + A +
Sbjct: 126 EPATVAPVRNGNASRQTAKTQTAERPATTRPARKQAVIEPKKPQATAKTEPKPVAQTPKR 185
Query: 454 EAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTAS 507
PAAPV + P A++ P P ET + AP +P+
Sbjct: 186 TEPAAPVASTKAPAATSTPAPKET--------ATTAPVQTASPAQTTATPAAGG 231
Score = 37.6 bits (87), Expect = 0.012
Identities = 32/121 (26%), Positives = 43/121 (35%), Gaps = 8/121 (6%)
Query: 359 PSKPPAAEP-----SQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATP 413
P++P P + + T+ E T P K A P + P TP
Sbjct: 124 PTEPATVAPVRNGNASRQTAKTQTAERPATTRPARKQAVIEPKKPQATAKTEPKPVAQTP 183
Query: 414 TETTPAPVSTPTETAAASPVAAPVPSPTT---PVESPAASTPVEAPAAPVDTPVTPVASA 470
T PA T+ AA+ AP + TT SPA +T A V + SA
Sbjct: 184 KRTEPAAPVASTKAPAATSTPAPKETATTAPVQTASPAQTTATPAAGGKTAGNVGSLKSA 243
Query: 471 P 471
P
Sbjct: 244 P 244
Score = 36.1 bits (83), Expect = 0.034
Identities = 34/109 (31%), Positives = 42/109 (38%), Gaps = 5/109 (4%)
Query: 413 PTE-TTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAP 471
PTE T APV + + TT A + P A T PVA P
Sbjct: 124 PTEPATVAPVRNGNASRQTAKTQTAERPATTRPARKQAVIEPKKPQATAKTEPKPVAQTP 183
Query: 472 P-TPAETPGAPEPVPSP-AAPAPVETPSVPAEPTPTASPVQTSQPCAST 518
T P A P+ + PAP ET + P TASP QT+ A+
Sbjct: 184 KRTEPAAPVASTKAPAATSTPAPKETAT--TAPVQTASPAQTTATPAAG 230
>gnl|CDD|237782 PRK14666, uvrC, excinuclease ABC subunit C; Provisional.
Length = 694
Score = 40.6 bits (95), Expect = 0.002
Identities = 22/90 (24%), Positives = 31/90 (34%), Gaps = 7/90 (7%)
Query: 420 PVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPG 479
P + E +P A + P P + PV PVA+A P A P
Sbjct: 317 PDTEGREGDDLAPTAVCTDAGLLPDTPLLPDAPEGSSD-----PVVPVAAATPVDASLPD 371
Query: 480 APEPVPSPAAPAPV-ETPSVPAEPTPTASP 508
+P + A V A+PT A+
Sbjct: 372 V-RTGTAPTSLANVSHADPAVAQPTQAATL 400
Score = 37.9 bits (88), Expect = 0.014
Identities = 25/112 (22%), Positives = 32/112 (28%), Gaps = 1/112 (0%)
Query: 366 EPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPV-PAPSTPPVATPTETTPAPVSTP 424
E + P P + A PV PV A T AP S
Sbjct: 323 EGDDLAPTAVCTDAGLLPDTPLLPDAPEGSSDPVVPVAAATPVDASLPDVRTGTAPTSLA 382
Query: 425 TETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAE 476
+ A VA P + T +P +T + D PV PP
Sbjct: 383 NVSHADPAVAQPTQAATLAGAAPKGATHLMLEETLADLRGGPVRIVPPRNPA 434
Score = 37.6 bits (87), Expect = 0.016
Identities = 24/108 (22%), Positives = 32/108 (29%), Gaps = 5/108 (4%)
Query: 405 PSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPV 464
P P AP + T+ P +P P S PV A A PVD
Sbjct: 314 PWLPDTEGREGDDLAPTAVCTDAGLL-PDTPLLPD--APEGSSDPVVPV-AAATPVD-AS 368
Query: 465 TPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQTS 512
P P P+ A P T + A T ++ +
Sbjct: 369 LPDVRTGTAPTSLANVSHADPAVAQPTQAATLAGAAPKGATHLMLEET 416
Score = 31.4 bits (71), Expect = 1.4
Identities = 26/112 (23%), Positives = 35/112 (31%), Gaps = 24/112 (21%)
Query: 382 PPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPT 441
P T + V P TP + E + PV PV
Sbjct: 317 PDTEGREGDDLAPTAVCTDAGLLPDTPLLPDAPEGSSDPVV---------PV-------- 359
Query: 442 TPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAET-PGAPEPVPSPAAPAP 492
AA+TPV+A V T P + A + A+ P + A AP
Sbjct: 360 ------AAATPVDASLPDVRTGTAPTSLANVSHADPAVAQPTQAATLAGAAP 405
>gnl|CDD|215130 PLN02217, PLN02217, probable pectinesterase/pectinesterase
inhibitor.
Length = 670
Score = 40.5 bits (94), Expect = 0.002
Identities = 34/97 (35%), Positives = 47/97 (48%), Gaps = 8/97 (8%)
Query: 422 STPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAP 481
STPT +AA+S SP+T V +P+ S P +P TP V+ + PA G+P
Sbjct: 571 STPTGSAASSNTTFSSDSPSTVV-APSTSPPAGHLGSPPATPSKIVSPSTSPPASHLGSP 629
Query: 482 EPVPSPAAPAPVETPSVPAEPTPTASPVQTSQPCAST 518
P+ E+ A T TASP ++S AST
Sbjct: 630 -----STTPSSPESSIKVAS-TETASP-ESSIKVAST 659
Score = 39.3 bits (91), Expect = 0.004
Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
Query: 400 SPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAP 459
S + T + +P+ V P+ + A + +P +P+ + SP+ S P +P
Sbjct: 571 STPTGSAASSNTTFSSDSPSTVVAPSTSPPAGHLGSPPATPSK-IVSPSTSPPASHLGSP 629
Query: 460 VDTPVTPVASAPPTPAETPGAPE 482
TP +P +S ET +PE
Sbjct: 630 STTPSSPESSIKVASTET-ASPE 651
Score = 38.1 bits (88), Expect = 0.012
Identities = 24/96 (25%), Positives = 40/96 (41%), Gaps = 1/96 (1%)
Query: 414 TETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPT 473
T +TP + + T +S + V +P+T + +P P+ V +P AS +
Sbjct: 569 TNSTPTGSAASSNTTFSSDSPSTVVAPSTSPPAGHLGSPPATPSKIVSPSTSPPASHLGS 628
Query: 474 PAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPV 509
P+ TP +PE A +P + T S V
Sbjct: 629 PSTTPSSPES-SIKVASTETASPESSIKVASTESSV 663
Score = 36.2 bits (83), Expect = 0.041
Identities = 28/103 (27%), Positives = 43/103 (41%), Gaps = 7/103 (6%)
Query: 364 AAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVST 423
A P T S T SS T P+ V P P +PP TP+ + +
Sbjct: 563 AGNPGSTNSTPTGSAASSNTTFSSDSPSTVVAPSTSPPAGHLGSPP------ATPSKIVS 616
Query: 424 PTETAAASPVAAPVPSPTTPVES-PAASTPVEAPAAPVDTPVT 465
P+ + AS + +P +P++P S AST +P + + T
Sbjct: 617 PSTSPPASHLGSPSTTPSSPESSIKVASTETASPESSIKVAST 659
>gnl|CDD|237605 PRK14086, dnaA, chromosomal replication initiation protein;
Provisional.
Length = 617
Score = 40.2 bits (94), Expect = 0.002
Identities = 22/126 (17%), Positives = 28/126 (22%), Gaps = 16/126 (12%)
Query: 386 PEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVE 445
++ A +V+P P P P T P P P
Sbjct: 80 RPIRIAITVDPSAGEPAPPPPHAR-RTSEPELPRP---GRRPYEGYGGPRADDRPPGLPR 135
Query: 446 SPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVP---SPAAPAPVETPSVPAEP 502
T PA P P P P A + P + PA
Sbjct: 136 QDQLPTAR--PAYPAYQQ-------RPEPGAWPRAADDYGWQQQRLGFPPRAPYASPASY 186
Query: 503 TPTASP 508
P
Sbjct: 187 APEQER 192
Score = 38.7 bits (90), Expect = 0.007
Identities = 33/180 (18%), Positives = 47/180 (26%), Gaps = 22/180 (12%)
Query: 352 KISQTIEPS--KPPAAEPSQTTSESTEKKESSPPTVPEV-KPAASVEPVPVSPVPAPSTP 408
+I+ T++PS +P P + E P A P + T
Sbjct: 83 RIAITVDPSAGEPAPPPPHARRTSEPELPRPGRRPYEGYGGPRADDRPPGLPRQDQLPTA 142
Query: 409 PVATPTETTPA-PVSTPTETAAASPVAAPV-PSPTTPVESPAASTPVEAPAAPVDTPVTP 466
A P P + P + P P SPA+ P + P
Sbjct: 143 RPAYPAYQQRPEPGAWPRAADDYGWQQQRLGFPPRAPYASPASYAPEQERDREPYDAGRP 202
Query: 467 VASAPPTPAETPGA----------PEPVPSPAA-------PAPVETPSVPAEPTPTASPV 509
+ P P P P A P P E P P ++P
Sbjct: 203 EYDQRRRDYDHPRPDWDRPRRDRTDRPEPPPGAGHVHRGGPGPPERDDAPVVPIRPSAPG 262
Score = 35.6 bits (82), Expect = 0.063
Identities = 31/178 (17%), Positives = 42/178 (23%), Gaps = 33/178 (18%)
Query: 359 PSKPPAAEPSQTTSESTEKKESSP--PTVPEVKPAASVEPVPVSPVPAPSTPPVATPTE- 415
P + ++ P +P +PA P P +
Sbjct: 111 PRPGRRPYEGYGGPRADDRPPGLPRQDQLPTARPAYPAYQQRPEPGAWPRAADDYGWQQQ 170
Query: 416 ----TTPAPVSTPTETAAASPVAAPVPSPTTPVESPA------------------ASTPV 453
AP ++P A P P
Sbjct: 171 RLGFPPRAPYASPASYAPEQERDREPYDAGRPEYDQRRRDYDHPRPDWDRPRRDRTDRPE 230
Query: 454 EAPAA---PVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASP 508
P A P P P P AP P+ + APAP P EPT +P
Sbjct: 231 PPPGAGHVHRGGPGPPERDDAPVVPIRPSAPGPLAAQPAPAP-----GPGEPTARLNP 283
>gnl|CDD|236652 PRK10118, PRK10118, flagellar hook-length control protein;
Provisional.
Length = 408
Score = 39.8 bits (93), Expect = 0.003
Identities = 21/120 (17%), Positives = 35/120 (29%), Gaps = 5/120 (4%)
Query: 400 SPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTT--PVESPAASTPVEAPA 457
+ P P ++ +A + + +
Sbjct: 154 DNTTPVADAPSTVLPAEKPTLLTKDMPSAPQDETHTLSSDEHEKGLTSAQLTTAQPDDAP 213
Query: 458 APVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQTSQPCAS 517
P+TP+A+ AE P PV + A+P +P PTA+ S P S
Sbjct: 214 GTPAQPLTPLAAEAQAKAEVISTPSPVTAAASPTIT---PHQTQPLPTAAAPVLSAPLGS 270
Score = 34.5 bits (79), Expect = 0.14
Identities = 26/116 (22%), Positives = 39/116 (33%), Gaps = 5/116 (4%)
Query: 356 TIEPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTE 415
T P P++ + T+ S+P + E S + P A T
Sbjct: 157 TPVADAPSTVLPAEKPTLLTKDMPSAPQDETHTLSSDEHEKGLTSAQLTTAQPDDAPGTP 216
Query: 416 TTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAP 471
P A A ++ P +PV + A+ T P+ T PV SAP
Sbjct: 217 AQPLTPLAAEAQAKAEVISTP-----SPVTAAASPTITPHQTQPLPTAAAPVLSAP 267
>gnl|CDD|165527 PHA03269, PHA03269, envelope glycoprotein C; Provisional.
Length = 566
Score = 40.1 bits (93), Expect = 0.003
Identities = 30/113 (26%), Positives = 42/113 (37%), Gaps = 11/113 (9%)
Query: 410 VATPTETTPAPVSTPT-ETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVA 468
+ + P T+AA+ P P+P A+ P A A P
Sbjct: 15 INLIIANLNTNIPIPELHTSAATQKPDPAPAPH----QAASRAPDPAVAPTSAASRKPDL 70
Query: 469 SAPPTPAETPGAPEPVPSP-----AAPAPVETPSVPAEPTPTASPVQTSQPCA 516
+ PTPA + +P P+P AP P P + A P P A+ TS A
Sbjct: 71 AQAPTPAASE-KFDPAPAPHQAASRAPDPAVAPQLAAAPKPDAAEAFTSAAQA 122
Score = 38.2 bits (88), Expect = 0.010
Identities = 31/140 (22%), Positives = 42/140 (30%), Gaps = 14/140 (10%)
Query: 379 ESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATP---TETTPAPVSTPTETAAASPVAA 435
+ +P + S P PAP P T A P A +P A+
Sbjct: 20 ANLNTNIPIPELHTSAATQKPDPAPAPHQAASRAPDPAVAPTSAASRKPDLAQAPTPAAS 79
Query: 436 PVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVET 495
P A+ P A A + P A+ T A A AP +
Sbjct: 80 EKFDPAPAPHQAASRAPDPAVAPQLAAAPKPDAAEAFTSAAQ----------AHEAPADA 129
Query: 496 PSVPAEPTPT-ASPVQTSQP 514
+ A P A+ Q S P
Sbjct: 130 GTSAASKKPDPAAHTQHSPP 149
Score = 36.6 bits (84), Expect = 0.027
Identities = 31/124 (25%), Positives = 43/124 (34%), Gaps = 18/124 (14%)
Query: 363 PAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVS---PVPAPSTPPVATPTETTPA 419
PA P Q S + + +P + KP + P P + PAP+ A+ P
Sbjct: 42 PAPAPHQAASRAPDPA-VAPTSAASRKPDLAQAPTPAASEKFDPAPAPHQAAS---RAPD 97
Query: 420 PVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPG 479
P P AAP P S A + AP D + + P A T
Sbjct: 98 PAVAPQLA------AAPKPDAAEAFTSAAQAHE-----APADAGTSAASKKPDPAAHTQH 146
Query: 480 APEP 483
+P P
Sbjct: 147 SPPP 150
Score = 28.9 bits (64), Expect = 7.2
Identities = 19/92 (20%), Positives = 27/92 (29%), Gaps = 11/92 (11%)
Query: 354 SQTIEPSKPPAAEPS---QTTSESTEKKESSPPTVPEVKPAASVEPVPV-------SPVP 403
S+ +P+ P + S T P AAS P P +P P
Sbjct: 51 SRAPDPAVAPTSAASRKPDLAQAPTPAASEKFDPAPAPHQAASRAPDPAVAPQLAAAPKP 110
Query: 404 APSTPPVATPTETTPAPVSTPTETAAASPVAA 435
+ + AP T A+ P A
Sbjct: 111 DAAEAFTSAAQA-HEAPADAGTSAASKKPDPA 141
>gnl|CDD|237000 PRK11855, PRK11855, dihydrolipoamide acetyltransferase; Reviewed.
Length = 547
Score = 39.8 bits (94), Expect = 0.003
Identities = 30/168 (17%), Positives = 42/168 (25%), Gaps = 61/168 (36%)
Query: 403 PAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTP------------------- 443
A + P A A + AA + AA
Sbjct: 81 AAAAAAPAAAAAPAAAAAAAPAPAAAAPAAAAAAAGGGVVEVKVPDIGEITEVEVIEWLV 140
Query: 444 --------------VESPAASTPVEAPAA--------------PVDTPV--------TPV 467
VE+ A+ + +P A V + + P
Sbjct: 141 KVGDTVEEDQSLITVETDKATMEIPSPVAGVVKEIKVKVGDKVSVGSLLVVIEVAAAAPA 200
Query: 468 ASAPPTPAETPGAPEPVPSPA-APAPVETPSVPAEPTPT-----ASPV 509
A+A P A A P+PA A A + PA ASP
Sbjct: 201 AAAAPAAAAPAAAAAAAPAPAPAAAAAPAAAAPAAAAAPGKAPHASPA 248
Score = 38.7 bits (91), Expect = 0.008
Identities = 23/73 (31%), Positives = 29/73 (39%), Gaps = 16/73 (21%)
Query: 426 ETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVP 485
E AAA+P AA P+ P AA+ APA +A PA A P
Sbjct: 193 EVAAAAPAAAAAPAAAAP---AAAAAAAPAPA----------PAAAAAPAAAAPAAAAAP 239
Query: 486 SPAAPAPVETPSV 498
A A +P+V
Sbjct: 240 GKAPHA---SPAV 249
Score = 35.6 bits (83), Expect = 0.070
Identities = 16/67 (23%), Positives = 20/67 (29%), Gaps = 2/67 (2%)
Query: 384 TVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTE--TAAASPVAAPVPSPT 441
V +E +P A + A AP P AA+ AA
Sbjct: 182 KVSVGSLLVVIEVAAAAPAAAAAPAAAAPAAAAAAAPAPAPAAAAAPAAAAPAAAAAPGK 241
Query: 442 TPVESPA 448
P SPA
Sbjct: 242 APHASPA 248
Score = 34.8 bits (81), Expect = 0.11
Identities = 26/114 (22%), Positives = 31/114 (27%), Gaps = 21/114 (18%)
Query: 401 PVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPA--- 457
PA + P A A P AAA+P AA + P ++P AS V A
Sbjct: 197 AAPAAAAAPAAAAPAAAAAAAPAPAPAAAAAPAAAAPAAAAAPGKAPHASPAVRRLAREL 256
Query: 458 ------------------APVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPV 493
V V SA A A P P
Sbjct: 257 GVDLSQVKGTGKKGRITKEDVQAFVKGAMSAAAAAAAAAAAAGGGGLGLLPWPK 310
Score = 33.3 bits (77), Expect = 0.32
Identities = 9/44 (20%), Positives = 11/44 (25%)
Query: 467 VASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQ 510
A A A A P + AA + A V
Sbjct: 77 AAGAAAAAAAPAAAAAPAAAAAAAPAPAAAAPAAAAAAAGGGVV 120
Score = 32.5 bits (75), Expect = 0.55
Identities = 25/160 (15%), Positives = 36/160 (22%), Gaps = 57/160 (35%)
Query: 411 ATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVE---------------- 454
A PA + P AAA+P A + V+
Sbjct: 80 AAAAAAAPAAAAAPAAAAAAAPAPAAAAPAAAAAAAGGGVVEVKVPDIGEITEVEVIEWL 139
Query: 455 --------------------------APAA--------------PVDTPVTPVASAPPTP 474
+P A V + + + A P
Sbjct: 140 VKVGDTVEEDQSLITVETDKATMEIPSPVAGVVKEIKVKVGDKVSVGSLLVVIEVAAAAP 199
Query: 475 AETPGAPEPVPSP-AAPAPVETPSVPAEPTPTASPVQTSQ 513
A P+ AA AP P+ A P A +
Sbjct: 200 AAAAAPAAAAPAAAAAAAPAPAPAAAAAPAAAAPAAAAAP 239
Score = 30.9 bits (71), Expect = 1.6
Identities = 14/55 (25%), Positives = 20/55 (36%), Gaps = 1/55 (1%)
Query: 379 ESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPV 433
++ P AA+ PAP+ A P PA + P + ASP
Sbjct: 195 AAAAPAAAAAPAAAAPAAAAA-AAPAPAPAAAAAPAAAAPAAAAAPGKAPHASPA 248
Score = 29.8 bits (68), Expect = 3.6
Identities = 16/51 (31%), Positives = 21/51 (41%), Gaps = 4/51 (7%)
Query: 444 VESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVE 494
+E+ A+ APAA P A+A PA AP + A VE
Sbjct: 75 IEAAGAAAAAAAPAAAA----APAAAAAAAPAPAAAAPAAAAAAAGGGVVE 121
>gnl|CDD|177464 PHA02682, PHA02682, ORF080 virion core protein; Provisional.
Length = 280
Score = 39.1 bits (90), Expect = 0.003
Identities = 30/81 (37%), Positives = 35/81 (43%), Gaps = 4/81 (4%)
Query: 438 PSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPS 497
PSP +PA A AP T P + PP A T P P+PA PAP PS
Sbjct: 84 PSPACAAPAPACPACAPAAPAPAVTCPAPAPACPPATAPTCPPPAVCPAPARPAPACPPS 143
Query: 498 V----PAEPTPTASPVQTSQP 514
PA P PT P ++P
Sbjct: 144 TRQCPPAPPLPTPKPAPAAKP 164
Score = 37.9 bits (87), Expect = 0.010
Identities = 41/163 (25%), Positives = 56/163 (34%), Gaps = 12/163 (7%)
Query: 359 PSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTP 418
P+ P + + KE+ +K ++ P P +P A P P
Sbjct: 37 PAAPCPPDADVDPLDKYSVKEAGRYYQSRLKANSACMQRPSGQSPLAPSPACAAPAPACP 96
Query: 419 APVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETP 478
A A P AP P A+ P P A P P + PP+ + P
Sbjct: 97 ACAPAAPAPAVTCPAPAPA--------CPPATAPTCPPPAVCPAPARPAPACPPSTRQCP 148
Query: 479 GA---PEPVPSPAAPAPVETPSVPAEPTPTAS-PVQTSQPCAS 517
A P P P+PAA +P P AS P + P AS
Sbjct: 149 PAPPLPTPKPAPAAKPIFLHNQLPPPDYPAASCPTIETAPAAS 191
Score = 35.6 bits (81), Expect = 0.045
Identities = 38/127 (29%), Positives = 47/127 (37%), Gaps = 6/127 (4%)
Query: 389 KPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPA 448
+P+ P AP+ A P AP T A A P P +PT P +
Sbjct: 75 RPSGQSPLAPSPACAAPAP---ACPACAPAAPAPAVTCPAPA-PACPPATAPTCPPPAVC 130
Query: 449 ASTPVEAPAAPVDTPVTPVASAPPTPAETPGA-PEPVPSPAAPAPVETPSVPA-EPTPTA 506
+ APA P T P A PTP P A P + + P S P E P A
Sbjct: 131 PAPARPAPACPPSTRQCPPAPPLPTPKPAPAAKPIFLHNQLPPPDYPAASCPTIETAPAA 190
Query: 507 SPVQTSQ 513
SPV +
Sbjct: 191 SPVLEPR 197
Score = 34.5 bits (78), Expect = 0.12
Identities = 39/117 (33%), Positives = 44/117 (37%), Gaps = 10/117 (8%)
Query: 383 PTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTT 442
P P PAA P P PAP+ PP PT PA P A A P P+T
Sbjct: 93 PACPACAPAA-PAPAVTCPAPAPACPPATAPTCPPPAVCPAPARPAPACP-------PST 144
Query: 443 PVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVP 499
PA P PA P P+ PP P +PAA PV P +P
Sbjct: 145 RQCPPAPPLPTPKPA-PAAKPIFLHNQLPPPDYPAASCPTIETAPAAS-PVLEPRIP 199
Score = 28.7 bits (63), Expect = 7.2
Identities = 29/126 (23%), Positives = 39/126 (30%), Gaps = 2/126 (1%)
Query: 361 KPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAP 420
+P P + + P P A P P P P+T P P PAP
Sbjct: 75 RPSGQSPLAPSPACAAPAPACPACAPAAPAPAVTCPAPAPACP-PATAPTCPPPAVCPAP 133
Query: 421 VSTPTETAAASPVAAPVPSPTTPVESPAASTPV-EAPAAPVDTPVTPVASAPPTPAETPG 479
++ P P TP +PAA P D P + PA +P
Sbjct: 134 ARPAPACPPSTRQCPPAPPLPTPKPAPAAKPIFLHNQLPPPDYPAASCPTIETAPAASPV 193
Query: 480 APEPVP 485
+P
Sbjct: 194 LEPRIP 199
>gnl|CDD|225689 COG3147, DedD, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 226
Score = 38.7 bits (90), Expect = 0.003
Identities = 31/118 (26%), Positives = 41/118 (34%), Gaps = 9/118 (7%)
Query: 394 VEPVPVSPVPA---PSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAAS 450
V +P+ P P + + P P E A A + + P A
Sbjct: 38 VAAIPLPPKPQGDRDEPRVLPAVVQVVALPT-QPPEGVAQEIQDAGDAAAASVDPQPVAQ 96
Query: 451 TPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASP 508
PVE+ A V PVA+ P P + P P PA P P P AEP +
Sbjct: 97 PPVESTPAGV-----PVAAQTPKPVKPPKQPPAGAVPAKPTPKPEPKPVAEPAAAPTG 149
Score = 36.8 bits (85), Expect = 0.017
Identities = 28/113 (24%), Positives = 37/113 (32%), Gaps = 6/113 (5%)
Query: 397 VPVSPVPAPSTPPVATP-TETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEA 455
V+ +P P P PA V A P P ++ A+
Sbjct: 36 DEVAAIPLPPKPQGDRDEPRVLPAVVQV-----VALPTQPPEGVAQEIQDAGDAAAASVD 90
Query: 456 PAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASP 508
P PV + P A+TP +P P A A P+ EP P A P
Sbjct: 91 PQPVAQPPVESTPAGVPVAAQTPKPVKPPKQPPAGAVPAKPTPKPEPKPVAEP 143
Score = 36.8 bits (85), Expect = 0.018
Identities = 31/115 (26%), Positives = 34/115 (29%), Gaps = 19/115 (16%)
Query: 396 PVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEA 455
V V +P VA A AA V P + P STP
Sbjct: 60 VVQVVALPTQPPEGVA------------QEIQDAGDAAAASVD-PQPVAQPPVESTPAGV 106
Query: 456 PAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQ 510
P A TP PP P P PV P+ A PT A VQ
Sbjct: 107 PVA----AQTPKPVKPPKQPPAGAVPAKPTPKPEPKPVAEPA--AAPTGQAFVVQ 155
Score = 34.5 bits (79), Expect = 0.085
Identities = 18/88 (20%), Positives = 27/88 (30%)
Query: 354 SQTIEPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATP 413
Q + P +Q ++ + +S P +P P V P
Sbjct: 61 VQVVALPTQPPEGVAQEIQDAGDAAAASVDPQPVAQPPVESTPAGVPVAAQTPKPVKPPK 120
Query: 414 TETTPAPVSTPTETAAASPVAAPVPSPT 441
A + PT PVA P +PT
Sbjct: 121 QPPAGAVPAKPTPKPEPKPVAEPAAAPT 148
Score = 29.9 bits (67), Expect = 2.7
Identities = 23/78 (29%), Positives = 26/78 (33%), Gaps = 12/78 (15%)
Query: 391 AASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAAS 450
AASV+P PV+ P STP TP PV P P V +
Sbjct: 86 AASVDPQPVAQPPVESTPAGVPVAAQTPKPVKPPK------------QPPAGAVPAKPTP 133
Query: 451 TPVEAPAAPVDTPVTPVA 468
P P A T A
Sbjct: 134 KPEPKPVAEPAAAPTGQA 151
Score = 28.3 bits (63), Expect = 8.6
Identities = 22/110 (20%), Positives = 30/110 (27%), Gaps = 3/110 (2%)
Query: 362 PPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPV 421
P Q + + V + + V P
Sbjct: 41 IPLPPKPQGDRDEPRVLPAVVQVVALPTQPPEGVAQEIQDAGDAAAASVDPQPVAQPPVE 100
Query: 422 STPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAP 471
STP A+ PV P P PA + P + P PV A+AP
Sbjct: 101 STPAGVPVAAQTPKPVKPPKQP---PAGAVPAKPTPKPEPKPVAEPAAAP 147
>gnl|CDD|222010 pfam13254, DUF4045, Domain of unknown function (DUF4045). This
presumed domain is functionally uncharacterized. This
domain family is found in bacteria and eukaryotes, and
is typically between 384 and 430 amino acids in length.
Length = 414
Score = 39.1 bits (91), Expect = 0.005
Identities = 27/132 (20%), Positives = 38/132 (28%)
Query: 383 PTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTT 442
P P S P P +T P T + +AP P T
Sbjct: 203 PVGLMRTPPPGSHSKSPSKSGIPDLPSSRDSEKTKPEKPQQETSSMDTEKSSAPKPRETL 262
Query: 443 PVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEP 502
+SP + P++ + +P + A PSP A +P S P
Sbjct: 263 DPKSPEKAPPIDTTEEELKSPEASPKESEEASARKRSPSLLSPSPKAESPKPLASPGKSP 322
Query: 503 TPTASPVQTSQP 514
SP Q
Sbjct: 323 RDPLSPRPKPQS 334
Score = 36.8 bits (85), Expect = 0.027
Identities = 30/121 (24%), Positives = 40/121 (33%), Gaps = 4/121 (3%)
Query: 359 PSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTP 418
PSK + + K E + S P P P +P A P +TT
Sbjct: 219 PSKSGIPDLPSSRDSEKTKPEKPQQETSSMDTEKSSAPKPRE-TLDPKSPEKAPPIDTTE 277
Query: 419 APVSTPTETAAASPVA-APVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAET 477
+ +P + S A A SP+ SP A +P P A S P P
Sbjct: 278 EELKSPEASPKESEEASARKRSPSLLSPSPKAESPK--PLASPGKSPRDPLSPRPKPQSP 335
Query: 478 P 478
P
Sbjct: 336 P 336
Score = 36.8 bits (85), Expect = 0.028
Identities = 18/108 (16%), Positives = 34/108 (31%), Gaps = 4/108 (3%)
Query: 358 EPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVP----APSTPPVATP 413
+ K +P Q TS +K S+P + P + + P+ +P P +
Sbjct: 232 DSEKTKPEKPQQETSSMDTEKSSAPKPRETLDPKSPEKAPPIDTTEEELKSPEASPKESE 291
Query: 414 TETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVD 461
+ + + + P+ SP P + P D
Sbjct: 292 EASARKRSPSLLSPSPKAESPKPLASPGKSPRDPLSPRPKPQSPPVND 339
Score = 31.4 bits (71), Expect = 1.1
Identities = 25/128 (19%), Positives = 39/128 (30%), Gaps = 12/128 (9%)
Query: 403 PAPSTPPVATPTETTPAP---VSTPTETAAASPVAAPVPSPTTP--VESPAASTPVEAPA 457
TP P +P+++ ++ T P + +S E +
Sbjct: 195 TNSFKEVTPVGLMRTPPPGSHSKSPSKSGIPDLPSSRDSEKTKPEKPQQETSSMDTEKSS 254
Query: 458 APVDTPVTPVASAPPTP-----AETPGAPEPVP--SPAAPAPVETPSVPAEPTPTASPVQ 510
AP S P E +PE P S A A +PS+ + SP
Sbjct: 255 APKPRETLDPKSPEKAPPIDTTEEELKSPEASPKESEEASARKRSPSLLSPSPKAESPKP 314
Query: 511 TSQPCAST 518
+ P S
Sbjct: 315 LASPGKSP 322
>gnl|CDD|218881 pfam06070, Herpes_UL32, Herpesvirus large structural phosphoprotein
UL32. The large phosphorylated protein (UL32-like) of
herpes viruses is the polypeptide most frequently
reactive in immuno-blotting analyses with antisera when
compared with other viral proteins.
Length = 777
Score = 39.1 bits (91), Expect = 0.005
Identities = 26/176 (14%), Positives = 42/176 (23%), Gaps = 23/176 (13%)
Query: 357 IEPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTET 416
P A + T T+ VKP S P++ + P
Sbjct: 573 FVIGTDPFAFAN--TVRLTDNMRGGNGVGSSVKPKGSASSKPLTGPGSDLKPATLNGKTP 630
Query: 417 TPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAA--PVDTPVTPVASAPPTP 474
+ + V A+S V P + +E T
Sbjct: 631 SSSLVGAARNAGASSKVKIPSGLGGFTSPISLLESALEDVLTSATSTPVKKNDPYLWDTN 690
Query: 475 AETPGA-------------------PEPVPSPAAPAPVETPSVPAEPTPTASPVQT 511
E G PV P P P + ++ + +P S +
Sbjct: 691 GEKAGGGTESASTTDVFQNFAGLNKKTPVGGPFQPKPPLSRALDSASSPGGSGGKP 746
Score = 31.8 bits (72), Expect = 1.1
Identities = 26/136 (19%), Positives = 37/136 (27%), Gaps = 9/136 (6%)
Query: 363 PAAEPSQTTSESTEKKESSPPTVPEVK-PAASVEPVPVSPVPAPSTPPVATPTETTPAPV 421
PA +T S S + +VK P+ + + V T +TP
Sbjct: 622 PATLNGKTPSSSLVGAARNAGASSKVKIPSGLGGFTSPISLLESALEDVLTSATSTPVKK 681
Query: 422 STP--TETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPG 479
+ P +T + TT V A + P P PP
Sbjct: 682 NDPYLWDTNGEKAGGGTESASTTDVFQNFAGLNKKTPVG------GPFQPKPPLSRALDS 735
Query: 480 APEPVPSPAAPAPVET 495
A P S P
Sbjct: 736 ASSPGGSGGKPGLDGV 751
Score = 29.9 bits (67), Expect = 4.4
Identities = 19/148 (12%), Positives = 37/148 (25%), Gaps = 7/148 (4%)
Query: 367 PSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTE 426
P ++ +S + A S P P T P A
Sbjct: 538 PPKSPPKSRRTLIVALSLASP-STAGSPRPKPSLGKFVIGTDPFAFANTVRLTDNMRGGN 596
Query: 427 TAAA------SPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGA 480
+ S + P+ P + ++ + + + +S P+ G
Sbjct: 597 GVGSSVKPKGSASSKPLTGPGSDLKPATLNGKTPSSSLVGAARNAGASSKVKIPSGLGGF 656
Query: 481 PEPVPSPAAPAPVETPSVPAEPTPTASP 508
P+ + S + P P
Sbjct: 657 TSPISLLESALEDVLTSATSTPVKKNDP 684
>gnl|CDD|140276 PTZ00249, PTZ00249, variable surface protein Vir28; Provisional.
Length = 516
Score = 38.9 bits (90), Expect = 0.005
Identities = 38/176 (21%), Positives = 57/176 (32%), Gaps = 6/176 (3%)
Query: 343 KDSWDNIWKKISQTIEPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPV 402
K+++D+ KI E K A + S + + P VE P +PV
Sbjct: 205 KNTFDSFILKIDPPREEQKAVTAHAHRRISGEARPPKHISFSSPHAHGRPPVETRPPNPV 264
Query: 403 PAPSTPPV--ATPTETTPAP-VSTPTETA-AASPVAAPVPSPTTPVESPAASTPVEAPAA 458
S+P P ET P V+ P+ A +PV P P+ + S A +A
Sbjct: 265 SV-SSPQAHGRHPGETHTPPLVTVPSSKAHDRNPVQTPTPTSVSGYSSQAKGLEKQAGGE 323
Query: 459 PVDTPVTPVASAP-PTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQTSQ 513
T P P P P P + + + P + Q
Sbjct: 324 SERTSSVPSEQFPLPLPVLLPLGQSGPLESSESEETDEYAGPKGLPEPELELVELQ 379
>gnl|CDD|237802 PRK14723, flhF, flagellar biosynthesis regulator FlhF; Provisional.
Length = 767
Score = 39.0 bits (91), Expect = 0.005
Identities = 20/61 (32%), Positives = 25/61 (40%), Gaps = 9/61 (14%)
Query: 442 TPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAA-PAPVETPSVPA 500
+ + AAS AP AP P VA AP A + +PAA PAP +
Sbjct: 46 EDLGAVAASAQAYAPPAPAPLPAALVAPAP--------AAASIAAPAAVPAPGAIGDLRG 97
Query: 501 E 501
E
Sbjct: 98 E 98
Score = 33.2 bits (76), Expect = 0.37
Identities = 13/52 (25%), Positives = 16/52 (30%), Gaps = 1/52 (1%)
Query: 458 APVDTPV-TPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASP 508
A +D + ASA P APA + A P P A
Sbjct: 42 AMLDEDLGAVAASAQAYAPPAPAPLPAALVAPAPAAASIAAPAAVPAPGAIG 93
Score = 33.2 bits (76), Expect = 0.41
Identities = 13/52 (25%), Positives = 16/52 (30%)
Query: 419 APVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASA 470
A + AAS A P+P + A P A A P A
Sbjct: 42 AMLDEDLGAVAASAQAYAPPAPAPLPAALVAPAPAAASIAAPAAVPAPGAIG 93
Score = 31.7 bits (72), Expect = 1.2
Identities = 12/52 (23%), Positives = 18/52 (34%), Gaps = 5/52 (9%)
Query: 404 APSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEA 455
++ P PAP P A +P AA + +P P A +
Sbjct: 51 VAASAQAYAP----PAPAPLPAALVAPAPAAASIAAPAAVPA-PGAIGDLRG 97
Score = 29.0 bits (65), Expect = 8.5
Identities = 10/48 (20%), Positives = 11/48 (22%)
Query: 381 SPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETA 428
A P P A P A + PA V P
Sbjct: 46 EDLGAVAASAQAYAPPAPAPLPAALVAPAPAAASIAAPAAVPAPGAIG 93
>gnl|CDD|220271 pfam09507, CDC27, DNA polymerase subunit Cdc27. This protein forms
the C subunit of DNA polymerase delta. It carries the
essential residues for binding to the Pol1 subunit of
polymerase alpha, from residues 293-332, which are
characterized by the motif D--G--VT, referred to as the
DPIM motif. The first 160 residues of the protein form
the minimal domain for binding to the B subunit, Cdc1,
of polymerase delta, the final 10 C-terminal residues,
362-372, being the DNA sliding clamp, PCNA, binding
motif.
Length = 427
Score = 38.7 bits (90), Expect = 0.006
Identities = 25/167 (14%), Positives = 41/167 (24%), Gaps = 16/167 (9%)
Query: 351 KKISQTIEPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPV 410
+ + PP A + + T P KP S+ V A T
Sbjct: 133 PNVKRRTGVGLPPVAPAASPALKPTA-----NGKRPSSKPPKSIMSPEVKVKSAKKTQDT 187
Query: 411 ATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASA 470
+ T T T + A+ + + E A S
Sbjct: 188 SKETTTEKTEGKTSVKAASLKRNPPKKSNIMSSFFKKKTKEKKEKKEASE--------ST 239
Query: 471 PPTPAETPGAPEPV---PSPAAPAPVETPSVPAEPTPTASPVQTSQP 514
+E V A P ++ EP P+ + +
Sbjct: 240 VKEESEEESGKRDVILEDESAEPTGLDEDEDEDEPKPSGERSDSEEE 286
>gnl|CDD|225711 COG3170, FimV, Tfp pilus assembly protein FimV [Cell motility and
secretion / Intracellular trafficking and secretion].
Length = 755
Score = 38.7 bits (90), Expect = 0.006
Identities = 36/155 (23%), Positives = 51/155 (32%), Gaps = 16/155 (10%)
Query: 359 PSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTP 418
KP A P++ E P V E++ + A P
Sbjct: 280 VGKPVAKAPAKVAKE--RALAELPARVAELQAQLNKAQ--------HELAQKAAPLAAAQ 329
Query: 419 APVSTPTETAAASPVAAP-VPSPTTPVE--SPAASTPVEAPAAPVDTPVTPVASAPPTPA 475
A + P ETA A AP V + ++P + S + P +AP + A
Sbjct: 330 AALDAPAETATAPSAPAPQVSAESSPAQPGSYLLAAPGDAPLGELAQA--QSARERLAEE 387
Query: 476 ETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQ 510
P A EP A A VE P E ++ P
Sbjct: 388 SVPAA-EPRSRLAPVAAVEQPFAEVESPLSSLPAP 421
Score = 36.4 bits (84), Expect = 0.034
Identities = 26/147 (17%), Positives = 42/147 (28%), Gaps = 5/147 (3%)
Query: 362 PPAAEPSQT-TSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAP 420
P AA+ + E+ + ++ A PV+ PA VA P
Sbjct: 246 PSAAQILRESPQEALAEVKAQTAAFAGEPSKADRVGKPVAKAPAK----VAKERALAELP 301
Query: 421 VSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGA 480
A + + P+ + A+ A A + P SA +PA+
Sbjct: 302 ARVAELQAQLNKAQHELAQKAAPLAAAQAALDAPAETATAPSAPAPQVSAESSPAQPGSY 361
Query: 481 PEPVPSPAAPAPVETPSVPAEPTPTAS 507
P A + E S
Sbjct: 362 LLAAPGDAPLGELAQAQSARERLAEES 388
Score = 30.7 bits (69), Expect = 2.1
Identities = 22/123 (17%), Positives = 33/123 (26%), Gaps = 14/123 (11%)
Query: 364 AAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVST 423
A + +++ E A S P V A S+P P S
Sbjct: 314 AQHELAQKAAPLAAAQAALDAPAETATAPSA---PAPQVSAESSP---------AQPGSY 361
Query: 424 PTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEP 483
+P+ + + S P A PV P E+P + P
Sbjct: 362 LLAAPGDAPLGELAQAQSARERLAEESVP-AAEPRSRLAPV-AAVEQPFAEVESPLSSLP 419
Query: 484 VPS 486
P
Sbjct: 420 APL 422
>gnl|CDD|177555 PHA03193, PHA03193, tegument protein VP11/12; Provisional.
Length = 594
Score = 38.9 bits (90), Expect = 0.006
Identities = 17/82 (20%), Positives = 26/82 (31%), Gaps = 1/82 (1%)
Query: 379 ESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVP 438
E T + + A + P + E A + AA A V
Sbjct: 488 ELPNDTTASTSNEMKGDAECPAAQDAAAILPASFQIENGGAADGSGLAIPAAMCDATAVE 547
Query: 439 SPTTPVESPAASTPVEAPAAPV 460
SP+T E+P + A + P
Sbjct: 548 SPSTVAETPPERL-LAAESGPR 568
Score = 29.3 bits (65), Expect = 5.5
Identities = 21/78 (26%), Positives = 29/78 (37%), Gaps = 1/78 (1%)
Query: 428 AAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSP 487
A A A +P+ TT S E PAA + P + G+ +P+
Sbjct: 480 AQALLSADELPNDTTASTSNEMKGDAECPAAQDAAAILPASFQIENGGAADGSGLAIPAA 539
Query: 488 AA-PAPVETPSVPAEPTP 504
VE+PS AE P
Sbjct: 540 MCDATAVESPSTVAETPP 557
>gnl|CDD|227315 COG4982, COG4982, 3-oxoacyl-[acyl-carrier protein].
Length = 866
Score = 38.7 bits (90), Expect = 0.007
Identities = 23/61 (37%), Positives = 25/61 (40%), Gaps = 6/61 (9%)
Query: 447 PAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTA 506
P A+ E PA TP P ASAP P A P P AA AP P + A
Sbjct: 2 PFATDAKEEPAKEEATPPAPAASAP-----APAAAAPAPV-AAAAPAAAGPRPDDEPFKA 55
Query: 507 S 507
S
Sbjct: 56 S 56
Score = 36.4 bits (84), Expect = 0.038
Identities = 13/44 (29%), Positives = 16/44 (36%), Gaps = 1/44 (2%)
Query: 474 PAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQTSQPCAS 517
P T EP A P S PA +PV + P A+
Sbjct: 2 PFATDAKEEPAKE-EATPPAPAASAPAPAAAAPAPVAAAAPAAA 44
Score = 36.4 bits (84), Expect = 0.046
Identities = 21/72 (29%), Positives = 23/72 (31%), Gaps = 9/72 (12%)
Query: 387 EVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVES 446
A EP P P PAPV AAA+P AA P E
Sbjct: 2 PFATDAKEEPAKEEATPPAPAASAPAPAAAAPAPV------AAAAPAAA---GPRPDDEP 52
Query: 447 PAASTPVEAPAA 458
AS + A A
Sbjct: 53 FKASDALHALVA 64
Score = 35.2 bits (81), Expect = 0.092
Identities = 15/55 (27%), Positives = 19/55 (34%), Gaps = 2/55 (3%)
Query: 429 AASPVAAPVPSPTTP-VESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPE 482
A P TP + +A P A APV P A+ P E A +
Sbjct: 4 ATDAKEEPAKEEATPPAPAASAPAPAAAAPAPV-AAAAPAAAGPRPDDEPFKASD 57
Score = 31.8 bits (72), Expect = 1.1
Identities = 17/66 (25%), Positives = 20/66 (30%), Gaps = 19/66 (28%)
Query: 401 PVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPV 460
PA P + PAP A+ APV AA+ P A P
Sbjct: 9 EEPAKEEATPPAPAASAPAP---------AAAAPAPV----------AAAAPAAAGPRPD 49
Query: 461 DTPVTP 466
D P
Sbjct: 50 DEPFKA 55
Score = 31.4 bits (71), Expect = 1.6
Identities = 17/58 (29%), Positives = 20/58 (34%), Gaps = 3/58 (5%)
Query: 437 VPSPTTPVESPAAST---PVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPA 491
P T E PA P A +AP P A PA P+ P A+ A
Sbjct: 1 DPFATDAKEEPAKEEATPPAPAASAPAPAAAAPAPVAAAAPAAAGPRPDDEPFKASDA 58
>gnl|CDD|237015 PRK11901, PRK11901, hypothetical protein; Reviewed.
Length = 327
Score = 38.1 bits (89), Expect = 0.008
Identities = 31/153 (20%), Positives = 46/153 (30%), Gaps = 24/153 (15%)
Query: 368 SQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPT-- 425
S ++S S+ + S + +P S PP++ PT T AP TP
Sbjct: 82 SGSSSLSSGNQSSPSAANNTSDGHDASGVKNTAPPQDISAPPIS-PTPTQAAPPQTPNGQ 140
Query: 426 --------------------ETAAASPVAAPVPSPTTP-VESPAASTPVEAPAAPVDTPV 464
A+ + PT P +P+ V A A TP
Sbjct: 141 QRIELPGNISDALSQQQGQVNAASQNAQGNTSTLPTAPATVAPSKGAKVPATAETHPTPP 200
Query: 465 TPVASAPPTPAETPGAPEPVPSPAAPAPVETPS 497
A+ P A VP + P +
Sbjct: 201 QKPATKKPAVNHHKTATVAVPPATSGKPKSGAA 233
Score = 37.4 bits (87), Expect = 0.015
Identities = 33/181 (18%), Positives = 53/181 (29%), Gaps = 26/181 (14%)
Query: 359 PSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTP-PVATPTETT 417
P++ + + S S ++ ++ S S A P + +
Sbjct: 61 PTEHESQQSSNNAGAEKNIDLSGSSSLSSGNQSSPSAANNTSDGHDASGVKNTAPPQDIS 120
Query: 418 PAPVS-TPTETAAASPVAAPVPSPTTPVESP---------------AASTPVEAPAAPVD 461
P+S TPT+ A P+ +E P AAS + + +
Sbjct: 121 APPISPTPTQAAPPQT-----PNGQQRIELPGNISDALSQQQGQVNAASQNAQGNTSTLP 175
Query: 462 TPVTPVAS--APPTPAETPGAPEPVPSPAA--PAPVETPSVPAEPTPTASPVQTSQPCAS 517
T VA PA P P PA PA + P S S ++
Sbjct: 176 TAPATVAPSKGAKVPATAETHPTPPQKPATKKPAVNHHKTATVAVPPATSGKPKSGAASA 235
Query: 518 T 518
Sbjct: 236 R 236
Score = 34.7 bits (80), Expect = 0.11
Identities = 18/73 (24%), Positives = 24/73 (32%), Gaps = 2/73 (2%)
Query: 380 SSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPS 439
S+ PT P + VP + P+ P P PA T T A P + P
Sbjct: 172 STLPTAPATVAPSKGAKVPATAETHPTPPQK--PATKKPAVNHHKTATVAVPPATSGKPK 229
Query: 440 PTTPVESPAASTP 452
+S P
Sbjct: 230 SGAASARALSSAP 242
Score = 32.3 bits (74), Expect = 0.47
Identities = 12/70 (17%), Positives = 22/70 (31%), Gaps = 1/70 (1%)
Query: 405 PSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAA-PVDTP 463
P+ P P++ P + T A P+ + A P +
Sbjct: 175 PTAPATVAPSKGAKVPATAETHPTPPQKPATKKPAVNHHKTATVAVPPATSGKPKSGAAS 234
Query: 464 VTPVASAPPT 473
++SAP +
Sbjct: 235 ARALSSAPAS 244
>gnl|CDD|184285 PRK13733, PRK13733, conjugal transfer protein TraV; Provisional.
Length = 171
Score = 37.1 bits (86), Expect = 0.008
Identities = 16/78 (20%), Positives = 20/78 (25%), Gaps = 6/78 (7%)
Query: 395 EPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVE 454
+ P A T P T T + + P P P
Sbjct: 51 QSSDAKPAAASLPRLAEGNFRTMPVQTVTATTPSGSRPAVTATPEQKLLAPRPLF----- 105
Query: 455 APAAPVDTPVTPVASAPP 472
AA V PV+S P
Sbjct: 106 -TAAREVKTVVPVSSVTP 122
Score = 30.9 bits (70), Expect = 0.92
Identities = 17/75 (22%), Positives = 21/75 (28%), Gaps = 6/75 (8%)
Query: 387 EVKPAA-SVEPVPVSPVPAPSTPPVATPTETTPAPVSTPT-----ETAAASPVAAPVPSP 440
+ KPAA S+ + V T + P T T AA
Sbjct: 54 DAKPAAASLPRLAEGNFRTMPVQTVTATTPSGSRPAVTATPEQKLLAPRPLFTAAREVKT 113
Query: 441 TTPVESPAASTPVEA 455
PV S TP
Sbjct: 114 VVPVSSVTPVTPPRP 128
Score = 29.7 bits (67), Expect = 2.1
Identities = 20/86 (23%), Positives = 31/86 (36%), Gaps = 5/86 (5%)
Query: 426 ETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVP 485
+++ A P AA +P E + PV TP + TP + AP P+
Sbjct: 51 QSSDAKPAAASLPRL---AEGNFRTMPV--QTVTATTPSGSRPAVTATPEQKLLAPRPLF 105
Query: 486 SPAAPAPVETPSVPAEPTPTASPVQT 511
+ A P P P++T
Sbjct: 106 TAAREVKTVVPVSSVTPVTPPRPLRT 131
>gnl|CDD|236712 PRK10547, PRK10547, chemotaxis protein CheA; Provisional.
Length = 670
Score = 38.6 bits (90), Expect = 0.009
Identities = 11/53 (20%), Positives = 16/53 (30%)
Query: 451 TPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPT 503
T V AP + V +P +PA E + +E T
Sbjct: 226 TAVAAPQEKAEETTEVVEVSPKISVPPVLKLAAEQAPAGRVEREKTARSSEST 278
Score = 32.8 bits (75), Expect = 0.51
Identities = 15/64 (23%), Positives = 18/64 (28%), Gaps = 7/64 (10%)
Query: 366 EPSQ----TTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPV 421
E Q T + ++K V EV P VP A P A
Sbjct: 218 EADQITFETAVAAPQEKAEETTEVVEVSPKI---SVPPVLKLAAEQAPAGRVEREKTARS 274
Query: 422 STPT 425
S T
Sbjct: 275 SEST 278
Score = 32.4 bits (74), Expect = 0.73
Identities = 10/46 (21%), Positives = 14/46 (30%), Gaps = 2/46 (4%)
Query: 465 TPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQ 510
+AP AE V + PV + AE P +
Sbjct: 225 ETAVAAPQEKAEETTEVVEVSPKISVPPV--LKLAAEQAPAGRVER 268
Score = 31.6 bits (72), Expect = 1.1
Identities = 9/62 (14%), Positives = 18/62 (29%), Gaps = 1/62 (1%)
Query: 357 IEPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVE-PVPVSPVPAPSTPPVATPTE 415
IE + E E+ P++ ++ +P A +E
Sbjct: 217 IEADQITFETAVAAPQEKAEETTEVVEVSPKISVPPVLKLAAEQAPAGRVEREKTARSSE 276
Query: 416 TT 417
+T
Sbjct: 277 ST 278
Score = 31.6 bits (72), Expect = 1.2
Identities = 12/66 (18%), Positives = 18/66 (27%), Gaps = 8/66 (12%)
Query: 394 VEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPV 453
+E ++ A + P T VS PV ++PA
Sbjct: 217 IEADQITFETAVAAPQEKAEETTEVVEVSPK-------ISVPPVL-KLAAEQAPAGRVER 268
Query: 454 EAPAAP 459
E A
Sbjct: 269 EKTARS 274
Score = 31.2 bits (71), Expect = 1.4
Identities = 8/52 (15%), Positives = 9/52 (17%), Gaps = 2/52 (3%)
Query: 440 PTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPA 491
A E V PV A P A +
Sbjct: 226 TAVAAPQEKAEETTEVVEVSPKISVPPVLKLAAEQA--PAGRVEREKTARSS 275
Score = 31.2 bits (71), Expect = 1.5
Identities = 8/54 (14%), Positives = 11/54 (20%)
Query: 438 PSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPA 491
T + AA V ++ P AP A
Sbjct: 219 ADQITFETAVAAPQEKAEETTEVVEVSPKISVPPVLKLAAEQAPAGRVEREKTA 272
Score = 30.9 bits (70), Expect = 2.2
Identities = 9/52 (17%), Positives = 12/52 (23%)
Query: 425 TETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAE 476
AA A + V + PV AA +E
Sbjct: 225 ETAVAAPQEKAEETTEVVEVSPKISVPPVLKLAAEQAPAGRVEREKTARSSE 276
Score = 30.5 bits (69), Expect = 2.6
Identities = 10/62 (16%), Positives = 16/62 (25%), Gaps = 1/62 (1%)
Query: 421 VSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGA 480
V + + VAAP E S + P + +T +
Sbjct: 216 VIEADQITFETAVAAPQEKAEETTEVVEVSPKISVPPVLK-LAAEQAPAGRVEREKTARS 274
Query: 481 PE 482
E
Sbjct: 275 SE 276
Score = 29.7 bits (67), Expect = 4.0
Identities = 8/66 (12%), Positives = 12/66 (18%), Gaps = 5/66 (7%)
Query: 389 KPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPA 448
+ A + V+ P A ES +
Sbjct: 225 ETAVAAPQEKAEETTE--VVEVSPKISVPPVL---KLAAEQAPAGRVEREKTARSSESTS 279
Query: 449 ASTPVE 454
VE
Sbjct: 280 IRVAVE 285
>gnl|CDD|177577 PHA03292, PHA03292, envelope glycoprotein I; Provisional.
Length = 413
Score = 38.4 bits (89), Expect = 0.009
Identities = 29/138 (21%), Positives = 45/138 (32%), Gaps = 24/138 (17%)
Query: 395 EPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASP----VAAPVPSPTTPVESPAAS 450
+P P + P P+ VATPT V+T T + + S A P+PT +
Sbjct: 174 DPEPTTARPEPAAGYVATPTPRYLNAVTTSTYSRSMSSQPAGAATATPTPTLDTGLTTVA 233
Query: 451 TPVEA--------------PAAPVDTPVTPV----ASAPPTPAETPGAPEPVPSPAAPAP 492
P E P+ V T + + T + P P+
Sbjct: 234 PPNETVVTGETALLCHWFQPSTRVPTLYLHLLGTTGNLTEDVLLTEDSEILRTPPPDPSS 293
Query: 493 VETPSV--PAEPTPTASP 508
+P + T + SP
Sbjct: 294 SRSPGAGDDFKQTNSTSP 311
>gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421). This
family represents a conserved region approximately 350
residues long within a number of plant proteins of
unknown function.
Length = 357
Score = 38.0 bits (88), Expect = 0.009
Identities = 25/130 (19%), Positives = 37/130 (28%), Gaps = 1/130 (0%)
Query: 382 PPTVPEVKPAASVEPVPVSPVPAPSTPPVATPT-ETTPAPVSTPTETAAASPVAAPVPSP 440
P + P + P S P TP E P S P A P A P
Sbjct: 85 DQQQQSQAPPSHQYPSQLPPQQVQSVPQQPTPQQEPYYPPPSQPQPPPAQQPQAQQPQPP 144
Query: 441 TTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPA 500
+ +P + P + P ++ + +P S P+ +
Sbjct: 145 PQVPQQQQYQSPPQQPQYQQNPPPQAQSAPQVSGLYPEESPYQPQSYPPNEPLPSSMAMQ 204
Query: 501 EPTPTASPVQ 510
P A P Q
Sbjct: 205 PPYSGAPPSQ 214
Score = 34.5 bits (79), Expect = 0.12
Identities = 25/158 (15%), Positives = 43/158 (27%), Gaps = 2/158 (1%)
Query: 358 EPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETT 417
+ S A + K+ P A V+ P+ P + +
Sbjct: 28 QLSHEEAQSSEAHSFHVDSTKQPPAPEQVAKHELADAPLQQVNAALPPAPAPQSPQPDQQ 87
Query: 418 PAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPV-ASAPPTPAE 476
+ P+ + V S +P P+ P P A P P +
Sbjct: 88 QQSQAPPSHQYPSQLPPQQVQSVP-QQPTPQQEPYYPPPSQPQPPPAQQPQAQQPQPPPQ 146
Query: 477 TPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQTSQP 514
P + P P + P A+ P S + +
Sbjct: 147 VPQQQQYQSPPQQPQYQQNPPPQAQSAPQVSGLYPEES 184
>gnl|CDD|223044 PHA03325, PHA03325, nuclear-egress-membrane-like protein;
Provisional.
Length = 418
Score = 37.9 bits (88), Expect = 0.010
Identities = 29/171 (16%), Positives = 53/171 (30%), Gaps = 13/171 (7%)
Query: 351 KKISQTIEPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPV 410
++ I A + + S K+ S ++ AA + + P
Sbjct: 248 YRLLFQIGQLTSSAFMLNSSLPTSAPKRRSRRA--GAMRAAAGETADLADDDGSEHSDPE 305
Query: 411 ATPTETTPAPVSTP----------TETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPV 460
P P PV P A + A P T S +S+ +
Sbjct: 306 PLPASLPPPPVRRPRVKHPEAGKEEPDGARNAEAKEPAQPATSTSSKGSSSAQNKDSGS- 364
Query: 461 DTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQT 511
P + +A+A + P+ + + +PSV + P P + P+
Sbjct: 365 TGPGSSLAAASSFLEDDDFGSPPLDLTTSLRHMPSPSVTSAPEPPSIPLTY 415
Score = 37.2 bits (86), Expect = 0.017
Identities = 28/132 (21%), Positives = 41/132 (31%), Gaps = 3/132 (2%)
Query: 364 AAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPP--VATPTETTPAPV 421
AA + ++ + S P +P P V V A P PA
Sbjct: 286 AAGETADLADDDGSEHSDPEPLPASLPPPPVRRPRVKHPEAGKEEPDGARNAEAKEPAQP 345
Query: 422 STPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETP-GA 480
+T T + +S T P S AA++ P+ S P+ + A
Sbjct: 346 ATSTSSKGSSSAQNKDSGSTGPGSSLAAASSFLEDDDFGSPPLDLTTSLRHMPSPSVTSA 405
Query: 481 PEPVPSPAAPAP 492
PEP P
Sbjct: 406 PEPPSIPLTYLS 417
>gnl|CDD|197736 smart00456, WW, Domain with 2 conserved Trp (W) residues. Also
known as the WWP or rsp5 domain. Binds proline-rich
polypeptides.
Length = 33
Score = 33.3 bits (77), Expect = 0.012
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 272 PLPPGWEQARTAEGQVYYL 290
PLPPGWE+ + +G+ YY
Sbjct: 1 PLPPGWEERKDPDGRPYYY 19
>gnl|CDD|221143 pfam11593, Med3, Mediator complex subunit 3 fungal. Mediator is a
large complex of up to 33 proteins that is conserved
from plants to fungi to humans - the number and
representation of individual subunits varying with
species. It is arranged into four different sections, a
core, a head, a tail and a kinase-activity part, and the
number of subunits within each of these is what varies
with species. Overall, Mediator regulates the
transcriptional activity of RNA polymerase II but it
would appear that each of the four different sections
has a slightly different function. Mediator subunit
Hrs1/Med3 is a physical target for Cyc8-Tup1, a yeast
transcriptional co-repressor.
Length = 381
Score = 37.7 bits (87), Expect = 0.012
Identities = 24/132 (18%), Positives = 34/132 (25%), Gaps = 15/132 (11%)
Query: 391 AASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESP--A 448
+ + + + TT + +TP AA P+ TT V S
Sbjct: 117 GTYNQLGNAGASASITKTSNGSDAATTSSTANTPAAAKVLKANAASAPNTTTGVGSAATT 176
Query: 449 ASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPA-------------PVET 495
A+ P T P A + S A A P T
Sbjct: 177 AAISATTATTPTTTQKKPRKPRQTKKTGPAAAAKAQASAQAQAQASAYNQMGSLGVPQNT 236
Query: 496 PSVPAEPTPTAS 507
+ P PT
Sbjct: 237 SMLAQIPNPTPL 248
Score = 33.8 bits (77), Expect = 0.20
Identities = 20/101 (19%), Positives = 30/101 (29%), Gaps = 6/101 (5%)
Query: 420 PVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAP---AAPVDTPVTPVASAPPTPAE 476
+ T + A A+ + S AA+T A AA V A T
Sbjct: 115 TLGTYNQLGNAGASASITKTSN---GSDAATTSSTANTPAAAKVLKANAASAPNTTTGVG 171
Query: 477 TPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQTSQPCAS 517
+ + + A P T P +P T + A
Sbjct: 172 SAATTAAISATTATTPTTTQKKPRKPRQTKKTGPAAAAKAQ 212
Score = 33.1 bits (75), Expect = 0.37
Identities = 24/104 (23%), Positives = 35/104 (33%), Gaps = 6/104 (5%)
Query: 417 TPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAP---PT 473
++ + T ++ A S T +PAA+ ++A AA T V SA
Sbjct: 122 LGNAGASASITKTSNGSDAATTSSTAN--TPAAAKVLKANAASAPNTTTGVGSAATTAAI 179
Query: 474 PAETPGAPEPVPS-PAAPAPVETPSVPAEPTPTASPVQTSQPCA 516
A T P P P + A AS +Q A
Sbjct: 180 SATTATTPTTTQKKPRKPRQTKKTGPAAAAKAQASAQAQAQASA 223
>gnl|CDD|218597 pfam05466, BASP1, Brain acid soluble protein 1 (BASP1 protein).
This family consists of several brain acid soluble
protein 1 (BASP1) or neuronal axonal membrane protein
NAP-22. The BASP1 is a neuron enriched Ca(2+)-dependent
calmodulin-binding protein of unknown function.
Length = 233
Score = 37.1 bits (85), Expect = 0.013
Identities = 38/145 (26%), Positives = 55/145 (37%), Gaps = 7/145 (4%)
Query: 363 PAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVS 422
P AEP +T + K E + PE +PAA+ P P S PA
Sbjct: 87 PKAEPEKTEGAAEAKAEPPKASDPEQEPAAAPGPAAGGEAPKASEASSQPAESAAPAKEE 146
Query: 423 TPTE---TAAASPVAAPVPSPTTPVESPAA-STPVEAPAAPVDTPVTPVASAPPTPAETP 478
++ A + A T +PA+ S P + AAP + TP A+ P+ T
Sbjct: 147 EKSKEEGEAKKTEAPAAAAQETKSDAAPASDSKPSSSEAAP-SSKETPAATEAPSS--TA 203
Query: 479 GAPEPVPSPAAPAPVETPSVPAEPT 503
A P P E P+ ++ T
Sbjct: 204 KASAPAAPAEEVKPSEAPAANSDQT 228
Score = 31.7 bits (71), Expect = 0.71
Identities = 35/158 (22%), Positives = 51/158 (32%), Gaps = 12/158 (7%)
Query: 359 PSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTP 418
E + E+ KE +P PE A+ P P A P
Sbjct: 64 QDTANKTEEKEGEKEAAAAKEEAPKAEPEKTEGAAEAKAEPPKASDPEQEPAAAP----- 118
Query: 419 APVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETP 478
P + A+ + P S E + EA P A+A T ++
Sbjct: 119 GPAAGGEAPKASEASSQPAESAAPAKEEEKSKEEGEAKKTE-----APAAAAQETKSDAA 173
Query: 479 GAPEPVPSPAAPAP--VETPSVPAEPTPTASPVQTSQP 514
A + PS + AP ETP+ P+ TA + P
Sbjct: 174 PASDSKPSSSEAAPSSKETPAATEAPSSTAKASAPAAP 211
Score = 31.7 bits (71), Expect = 0.80
Identities = 34/125 (27%), Positives = 46/125 (36%), Gaps = 14/125 (11%)
Query: 355 QTIEPSKPPAAEPSQTTSESTEKKE-----SSPPTVPEVKPAASVEPVPVSPVPAPSTPP 409
+ +P + PAA P K + P + S E AP+
Sbjct: 106 KASDPEQEPAAAPGPAAGGEAPKASEASSQPAESAAPAKEEEKSKEEGEAKKTEAPAAAA 165
Query: 410 VATPTETTPAPVSTPTETAAA-----SPVAAPVPSPTTPVESPAAS----TPVEAPAAPV 460
T ++ PA S P+ + AA +P A PS T +PAA P EAPAA
Sbjct: 166 QETKSDAAPASDSKPSSSEAAPSSKETPAATEAPSSTAKASAPAAPAEEVKPSEAPAANS 225
Query: 461 DTPVT 465
D V
Sbjct: 226 DQTVA 230
>gnl|CDD|222843 PHA02030, PHA02030, hypothetical protein.
Length = 336
Score = 37.3 bits (86), Expect = 0.016
Identities = 22/86 (25%), Positives = 26/86 (30%), Gaps = 4/86 (4%)
Query: 396 PVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPS-PTTPVESPAASTPVE 454
+ A S P + P AAA+ VA PS P P + P
Sbjct: 254 IIKPKSKAAGSNLPAVPNVAADAGSAAAPAVPAAAAAVAQAAPSVPQVPNVAVLPDVPQV 313
Query: 455 APAAPVDTPVTPVASAPPTPAETPGA 480
AP A P P A P P
Sbjct: 314 APVAA---PAAPEVPAVPVVPAAPQV 336
Score = 36.9 bits (85), Expect = 0.022
Identities = 29/98 (29%), Positives = 32/98 (32%), Gaps = 17/98 (17%)
Query: 405 PSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPV 464
P PA + + A S A VP+ V A AAP V
Sbjct: 254 IIKPKSKAAGSNLPAVPNVAAD--AGSAAAPAVPAAAAAV----------AQAAPSVPQV 301
Query: 465 TPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEP 502
VA P P P A PAAP P VPA P
Sbjct: 302 PNVAVLPDVPQVAPVAA-----PAAPEVPAVPVVPAAP 334
Score = 36.5 bits (84), Expect = 0.027
Identities = 21/80 (26%), Positives = 26/80 (32%), Gaps = 2/80 (2%)
Query: 431 SPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAP--EPVPSPA 488
+ P A+ A A V VA A P+ + P VP A
Sbjct: 255 IKPKSKAAGSNLPAVPNVAADAGSAAAPAVPAAAAAVAQAAPSVPQVPNVAVLPDVPQVA 314
Query: 489 APAPVETPSVPAEPTPTASP 508
A P VPA P A+P
Sbjct: 315 PVAAPAAPEVPAVPVVPAAP 334
Score = 35.0 bits (80), Expect = 0.083
Identities = 17/78 (21%), Positives = 26/78 (33%), Gaps = 4/78 (5%)
Query: 443 PVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEP 502
++ + + PA P A+AP PA A +P+ P +P P
Sbjct: 254 IIKPKSKAAGSNLPAVPNVAADAGSAAAPAVPA--AAAAVAQAAPSVPQVPNVAVLPDVP 311
Query: 503 --TPTASPVQTSQPCAST 518
P A+P P
Sbjct: 312 QVAPVAAPAAPEVPAVPV 329
Score = 32.3 bits (73), Expect = 0.65
Identities = 25/95 (26%), Positives = 30/95 (31%), Gaps = 9/95 (9%)
Query: 365 AEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTP 424
++ S+ P VP V A P P A + A P P
Sbjct: 249 GGEDLIIKPKSKAAGSNLPAVPNVAADAGSAAAPAVPAAAAAVAQAAPSVPQVPNVAVLP 308
Query: 425 TETAAASPVAAPVPSPTTPVESPAASTPVEAPAAP 459
P APV +P P E PA PAAP
Sbjct: 309 -----DVPQVAPVAAPAAP-EVPAVPV---VPAAP 334
Score = 32.3 bits (73), Expect = 0.66
Identities = 23/83 (27%), Positives = 28/83 (33%), Gaps = 4/83 (4%)
Query: 379 ESSPPTVPEVKPAASVEP-VPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPV 437
P+ K A S P VP A S A P + P+ + P
Sbjct: 250 GEDLIIKPKSKAAGSNLPAVPNVAADAGSAAAPAVPAAAAAVAQAAPSVPQVPNVAVLPD 309
Query: 438 PSPTTPVESPAASTPVEAPAAPV 460
PV +PAA E PA PV
Sbjct: 310 VPQVAPVAAPAA---PEVPAVPV 329
>gnl|CDD|220840 pfam10667, DUF2486, Protein of unknown function (DUF2486). This
family is made up of members from various Burkholderia
spp. The function is unknown.
Length = 245
Score = 36.8 bits (85), Expect = 0.017
Identities = 40/157 (25%), Positives = 54/157 (34%), Gaps = 20/157 (12%)
Query: 375 TEKKESSPPTVPEV-KPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPV 433
T+ +SS PT+ +V P V S A A P T V + A+A+PV
Sbjct: 2 TQANDSSIPTLTDVLVPGHPVPARSSSADAAGPHDDAAEPV-LTDQIVPGAEQAASAAPV 60
Query: 434 AA--------------PVPSPTTPVESPAASTPVEAPAAPVDTPVTPV--ASAPPTPAET 477
A PVP+P P + T APA P P A+A P +
Sbjct: 61 HAAREATADPEFVAVEPVPTPHVPAVALPGDTD--APAEPGAAPHVVAERAAAMQAPLPS 118
Query: 478 PGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQTSQP 514
A + +P A A A + S P
Sbjct: 119 ALAADDPQAPPAGATAADAGDAAPDATPPAAGDASPP 155
Score = 36.8 bits (85), Expect = 0.017
Identities = 39/143 (27%), Positives = 51/143 (35%), Gaps = 12/143 (8%)
Query: 364 AAEPSQTTSESTEKKESSPPTVPEVKPAASVEP--VPVSPVPAPSTPPVATPTETTPAPV 421
AAEP T ++++ A+ +P V V PVP P P VA P T AP
Sbjct: 38 AAEPVLTDQIVPGAEQAASAAPVHAAREATADPEFVAVEPVPTPHVPAVALPG-DTDAPA 96
Query: 422 STPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAP 481
AA VA + P+ S A+ +AP A T + P TP P
Sbjct: 97 E---PGAAPHVVAERAAAMQAPLPSALAADDPQAPPAGA----TAADAGDAAPDATP--P 147
Query: 482 EPVPSPAAPAPVETPSVPAEPTP 504
+ A S A T
Sbjct: 148 AAGDASPPAAAQAAASAAAALTD 170
Score = 31.0 bits (70), Expect = 1.1
Identities = 24/120 (20%), Positives = 31/120 (25%), Gaps = 3/120 (2%)
Query: 354 SQTIEPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATP 413
Q + AA + E + P VP V P P AP
Sbjct: 52 EQAASAAPVHAAREATADPEFVAVEPVPTPHVPAVALPGD-TDAPAEPGAAPHVVAERAA 110
Query: 414 TETTPAPVSTPTETAAASP--VAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAP 471
P P + + A P A P +P A+ PAA A
Sbjct: 111 AMQAPLPSALAADDPQAPPAGATAADAGDAAPDATPPAAGDASPPAAAQAAASAAAALTD 170
>gnl|CDD|183854 PRK13042, PRK13042, superantigen-like protein; Reviewed.
Length = 291
Score = 36.9 bits (85), Expect = 0.018
Identities = 25/83 (30%), Positives = 35/83 (42%), Gaps = 12/83 (14%)
Query: 391 AASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAAS 450
AA+ + V AP + P +T E AP S P T P P ++P A+
Sbjct: 27 AANATTPSSTKVEAPQSTPPSTKVE---APQSKPNATTP------PSTKVEAPQQTPNAT 77
Query: 451 TPVEAPAAPVDTPVTPVASAPPT 473
TP + V+TP +P PT
Sbjct: 78 TP---SSTKVETPQSPTTKQVPT 97
Score = 36.1 bits (83), Expect = 0.030
Identities = 28/98 (28%), Positives = 40/98 (40%), Gaps = 19/98 (19%)
Query: 416 TTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPA 475
TT +T A +P +T VE+P ++ P AP P A+ PP+
Sbjct: 17 TTGVITTTTQAANATTP-------SSTKVEAPQSTPPSTKVEAPQS---KPNATTPPSTK 66
Query: 476 ETPGAPEPVPSPAAPAP--VETPSVPAEPTPTASPVQT 511
AP+ P+ P+ VETP +PT V T
Sbjct: 67 VE--APQQTPNATTPSSTKVETPQ-----SPTTKQVPT 97
Score = 36.1 bits (83), Expect = 0.031
Identities = 27/94 (28%), Positives = 38/94 (40%), Gaps = 12/94 (12%)
Query: 411 ATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASA 470
T T A +TP+ T +P + P+T VE+P + P P T V +
Sbjct: 20 VITTTTQAANATTPSSTKVEAPQS---TPPSTKVEAPQSKPNATTP------PSTKVEAP 70
Query: 471 PPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTP 504
TP T + V +P +P T VP E P
Sbjct: 71 QQTPNATTPSSTKVETPQSPT---TKQVPTEINP 101
Score = 35.0 bits (80), Expect = 0.068
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 8/74 (10%)
Query: 441 TTPVESPAASTPVEAPAAPVDTPV-TPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVP 499
TT ++ A+TP + V+ P TP ++ P P A P PS AP +TP+
Sbjct: 22 TTTTQAANATTP---SSTKVEAPQSTPPSTKVEAPQSKPNATTP-PSTKVEAPQQTPNAT 77
Query: 500 AEPTPTASPVQTSQ 513
TP+++ V+T Q
Sbjct: 78 ---TPSSTKVETPQ 88
Score = 32.7 bits (74), Expect = 0.44
Identities = 26/71 (36%), Positives = 32/71 (45%), Gaps = 11/71 (15%)
Query: 404 APSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTP 463
A +T P +T E AP STP T +P P+ TTP ST VEAP
Sbjct: 28 ANATTPSSTKVE---APQSTPPSTKVEAP--QSKPNATTP-----PSTKVEAPQ-QTPNA 76
Query: 464 VTPVASAPPTP 474
TP ++ TP
Sbjct: 77 TTPSSTKVETP 87
Score = 31.5 bits (71), Expect = 0.89
Identities = 27/84 (32%), Positives = 36/84 (42%), Gaps = 13/84 (15%)
Query: 364 AAEPSQTTSESTEKKESSPPTV----PEVKPAASVEPVPVSPVPAPSTPPVATPTETTPA 419
AA + +S E +S+PP+ P+ KP A+ P P TP TTP+
Sbjct: 27 AANATTPSSTKVEAPQSTPPSTKVEAPQSKPNATTPPSTKVEAPQQ------TPNATTPS 80
Query: 420 PVSTPTETAAASPVAAPVPSPTTP 443
ST ET SP VP+ P
Sbjct: 81 --STKVET-PQSPTTKQVPTEINP 101
>gnl|CDD|139494 PRK13335, PRK13335, superantigen-like protein; Reviewed.
Length = 356
Score = 37.0 bits (85), Expect = 0.018
Identities = 22/108 (20%), Positives = 36/108 (33%), Gaps = 17/108 (15%)
Query: 354 SQTIEPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPS-TPPVAT 412
+Q + + + + + EK +S + + +S PAP T
Sbjct: 63 TQAANTRQERTPKLEKAPNTNEEKTSASKIEKISQPKQEEQKSLNISATPAPKQEQSQTT 122
Query: 413 PTETTPAP-VSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAP 459
TTP V+TP P+T P ST + P +P
Sbjct: 123 TESTTPKTKVTTP---------------PSTNTPQPMQSTKSDTPQSP 155
Score = 35.9 bits (82), Expect = 0.047
Identities = 24/101 (23%), Positives = 39/101 (38%), Gaps = 7/101 (6%)
Query: 368 SQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVAT-PTETTPAPVSTPTE 426
S TT + ++E +P E P + E S + S P + A + E
Sbjct: 60 SATTQAANTRQERTPK--LEKAPNTNEEKTSASKIEKISQPKQEEQKSLNISATPAPKQE 117
Query: 427 TAAASPVAA-PVPSPTTPVESPAASTPVEAPAAPVDTPVTP 466
+ + + P TTP P+ +TP + DTP +P
Sbjct: 118 QSQTTTESTTPKTKVTTP---PSTNTPQPMQSTKSDTPQSP 155
Score = 30.1 bits (67), Expect = 2.6
Identities = 25/131 (19%), Positives = 37/131 (28%), Gaps = 1/131 (0%)
Query: 370 TTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVA-TPTETTPAPVSTPTETA 428
T S EK +S+ A + + ++ +T A T E TP P
Sbjct: 25 TQSVKAEKIQSTKVDKVPTLKAERLAMINITAGANSATTQAANTRQERTPKLEKAPNTNE 84
Query: 429 AASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPA 488
+ + E + PA + T S P T P P
Sbjct: 85 EKTSASKIEKISQPKQEEQKSLNISATPAPKQEQSQTTTESTTPKTKVTTPPSTNTPQPM 144
Query: 489 APAPVETPSVP 499
+TP P
Sbjct: 145 QSTKSDTPQSP 155
Score = 28.6 bits (63), Expect = 9.9
Identities = 29/131 (22%), Positives = 43/131 (32%), Gaps = 7/131 (5%)
Query: 391 AASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVP--SPTTPVESPA 448
A ++ V VP +A T A S T+ A P +P T E +
Sbjct: 30 AEKIQSTKVDKVPTLKAERLAMINITAGA-NSATTQAANTRQERTPKLEKAPNTNEEKTS 88
Query: 449 ASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAP-VETPSVPAEPTPTAS 507
AS + + + SA P P + + P V TP P P S
Sbjct: 89 ASKIEKISQPKQEEQKSLNISATPAPKQE--QSQTTTESTTPKTKVTTPPSTNTPQPMQS 146
Query: 508 PVQTSQPCAST 518
++ P + T
Sbjct: 147 -TKSDTPQSPT 156
>gnl|CDD|220603 pfam10152, DUF2360, Predicted coiled-coil domain-containing protein
(DUF2360). This is the conserved 140 amino acid region
of a family of proteins conserved from nematodes to
humans. One C. elegans member is annotated as a
Daf-16-dependent longevity protein 1 but this could not
be confirmed. The function is unknown.
Length = 147
Score = 35.8 bits (83), Expect = 0.018
Identities = 13/68 (19%), Positives = 20/68 (29%), Gaps = 1/68 (1%)
Query: 376 EKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAA 435
E K +S P + E + P P S + PP +P +
Sbjct: 41 EAKLASIPGL-EDVTVQTTPPPPASAITNGGPPPPPPARAEAASPPPPEAPAEPPAEPEP 99
Query: 436 PVPSPTTP 443
P+ T
Sbjct: 100 EAPAENTV 107
Score = 33.5 bits (77), Expect = 0.11
Identities = 16/57 (28%), Positives = 19/57 (33%)
Query: 451 TPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTAS 507
T P P PP +P P +PA P P PAE T T +
Sbjct: 54 TVQTTPPPPASAITNGGPPPPPPARAEAASPPPPEAPAEPPAEPEPEAPAENTVTVA 110
Score = 30.8 bits (70), Expect = 0.84
Identities = 14/57 (24%), Positives = 18/57 (31%)
Query: 392 ASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPA 448
AS+ + V PP + T P P AA+ P P E A
Sbjct: 45 ASIPGLEDVTVQTTPPPPASAITNGGPPPPPPARAEAASPPPPEAPAEPPAEPEPEA 101
Score = 30.8 bits (70), Expect = 0.89
Identities = 8/54 (14%), Positives = 13/54 (24%)
Query: 426 ETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPG 479
+ + P + T P EA + P + P A
Sbjct: 52 DVTVQTTPPPPASAITNGGPPPPPPARAEAASPPPPEAPAEPPAEPEPEAPAEN 105
Score = 30.4 bits (69), Expect = 1.2
Identities = 18/64 (28%), Positives = 19/64 (29%), Gaps = 9/64 (14%)
Query: 412 TPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAP 471
T T P P S T P P P + AAS P A P A A
Sbjct: 54 TVQTTPPPPASAITNGG---------PPPPPPARAEAASPPPPEAPAEPPAEPEPEAPAE 104
Query: 472 PTPA 475
T
Sbjct: 105 NTVT 108
Score = 29.3 bits (66), Expect = 2.4
Identities = 16/47 (34%), Positives = 18/47 (38%), Gaps = 3/47 (6%)
Query: 465 TPVASAPPTPAETPGA---PEPVPSPAAPAPVETPSVPAEPTPTASP 508
V + PP PA P P P+ A A P PAEP P
Sbjct: 53 VTVQTTPPPPASAITNGGPPPPPPARAEAASPPPPEAPAEPPAEPEP 99
>gnl|CDD|237868 PRK14960, PRK14960, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 702
Score = 37.3 bits (86), Expect = 0.018
Identities = 23/84 (27%), Positives = 33/84 (39%)
Query: 357 IEPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTET 416
+ P++ +EP Q ++ S T E+ P ++V+PV V PA P E
Sbjct: 361 LAPNEILVSEPVQQNGQAEVGLNSQAQTAQEITPVSAVQPVEVISQPAMVEPEPEPEPEP 420
Query: 417 TPAPVSTPTETAAASPVAAPVPSP 440
P P P P P P P
Sbjct: 421 EPEPEPEPEPEPEPEPEPEPEPQP 444
Score = 31.2 bits (70), Expect = 1.5
Identities = 19/63 (30%), Positives = 22/63 (34%), Gaps = 6/63 (9%)
Query: 456 PAAPVDTPVTPVASAPPT-----PAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQ 510
A +TPV++ P PA PEP P P P P P EP P P
Sbjct: 384 SQAQTAQEITPVSAVQPVEVISQPAMVEPEPEPEPEP-EPEPEPEPEPEPEPEPEPEPEP 442
Query: 511 TSQ 513
Sbjct: 443 QPN 445
>gnl|CDD|226435 COG3921, COG3921, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 300
Score = 36.7 bits (85), Expect = 0.019
Identities = 28/127 (22%), Positives = 36/127 (28%), Gaps = 11/127 (8%)
Query: 390 PAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAA 449
+ VP P A P E A PVA P + +
Sbjct: 8 RPTQAAKADAATVPEQDVMPGAEPVSGQANEQKRIAEEAHPQPVARPSSTDDPVTPTE-- 65
Query: 450 STPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAP-APVETPSVPAEPTPTASP 508
PV P+ PV G P +P+PA P P+ P P+ PT
Sbjct: 66 GKPVRPKGLPILALAGPVGE--------LGQPMDLPAPANPGDPLALPEPPSPPTKPEEM 117
Query: 509 VQTSQPC 515
C
Sbjct: 118 PAAEVAC 124
Score = 33.6 bits (77), Expect = 0.18
Identities = 20/93 (21%), Positives = 29/93 (31%), Gaps = 2/93 (2%)
Query: 385 VPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPV 444
+P +P + PVA P+ T T + + + PV
Sbjct: 26 MPGAEPVSGQANEQKRIAEEAHPQPVARPSSTDDPVTPTEGKPVRPKGLPILALAG--PV 83
Query: 445 ESPAASTPVEAPAAPVDTPVTPVASAPPTPAET 477
+ APA P D P +PPT E
Sbjct: 84 GELGQPMDLPAPANPGDPLALPEPPSPPTKPEE 116
>gnl|CDD|234977 PRK01741, PRK01741, cell division protein ZipA; Provisional.
Length = 332
Score = 37.0 bits (86), Expect = 0.020
Identities = 26/167 (15%), Positives = 49/167 (29%), Gaps = 18/167 (10%)
Query: 348 NIWKKISQTIEPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPST 407
N T+ P P TE+ ES + + SV+ + ++ +P
Sbjct: 52 NEEADQPNTLNPQSYVETTPPPFQQPQTEESESENEVQIQQEVEQSVDEIKIT-LPNQEP 110
Query: 408 PPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPV 467
+ P + P + + P ++ AS +E +P P+ +
Sbjct: 111 AYYMQNHRSEPIQPTQP-QYQS-------------PTQTNVASMTIEETQSPNV-PIEGI 155
Query: 468 ASAPPTPAETPGAPEPVPSPAAPAPVETP--SVPAEPTPTASPVQTS 512
S+ A VE + + A P T+
Sbjct: 156 NSSSEQLRVELAELAAEIYSDASHRVELAKNFMEPQAETEAQPEATT 202
>gnl|CDD|216257 pfam01034, Syndecan, Syndecan domain. Syndecans are transmembrane
heparin sulfate proteoglycans which are implicated in
the binding of extracellular matrix components and
growth factors.
Length = 207
Score = 36.3 bits (84), Expect = 0.023
Identities = 19/80 (23%), Positives = 28/80 (35%), Gaps = 2/80 (2%)
Query: 403 PAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDT 462
PS + P T+ P T ++SP + T+ SP ST V +P +T
Sbjct: 60 ATPSDDEDSEPVTTSATP--PKLTTTSSSPSNDTTTASTSTKTSPTVSTTVTTTTSPSET 117
Query: 463 PVTPVASAPPTPAETPGAPE 482
+ T T G
Sbjct: 118 DTEEATTTVSTETPTEGGSS 137
Score = 28.9 bits (65), Expect = 5.1
Identities = 17/77 (22%), Positives = 29/77 (37%), Gaps = 3/77 (3%)
Query: 366 EPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETT--PAPVST 423
+ T+ +T K ++ + P + SP + + +P+ET A +
Sbjct: 67 DSEPVTTSATPPKLTTTSSSPSNDTTTASTSTKTSPTVSTTVTTTTSPSETDTEEATTTV 126
Query: 424 PTETAAAS-PVAAPVPS 439
TET AA PS
Sbjct: 127 STETPTEGGSSAATDPS 143
Score = 28.9 bits (65), Expect = 5.7
Identities = 19/78 (24%), Positives = 27/78 (34%), Gaps = 2/78 (2%)
Query: 395 EPVPVSPVPAPSTPPVATP-TETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPV 453
EPV S P T ++P +TT A ST T ++ V SP+ A +T
Sbjct: 69 EPVTTSATPPKLTTTSSSPSNDTTTASTSTKTSPTVSTTVTT-TTSPSETDTEEATTTVS 127
Query: 454 EAPAAPVDTPVTPVASAP 471
+ S
Sbjct: 128 TETPTEGGSSAATDPSKN 145
>gnl|CDD|237284 PRK13108, PRK13108, prolipoprotein diacylglyceryl transferase;
Reviewed.
Length = 460
Score = 36.9 bits (85), Expect = 0.023
Identities = 28/161 (17%), Positives = 40/161 (24%), Gaps = 20/161 (12%)
Query: 358 EPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETT 417
E + AE + S V P EP V VA T+
Sbjct: 294 EALEREPAELAAAAVASAAS---------AVGPVGPGEPNQPDDVAEAVKAEVAEVTDEV 344
Query: 418 PAPVSTPTETAAASPVAAPVPSPTTPVESPAA-STPVEAPAAPVDTPVTPVASAPPTPAE 476
A A + +E +APAA +
Sbjct: 345 AAESVVQVADRDGESTPAVEETSEADIEREQPGDLAGQAPAAH--------QVDAEAASA 396
Query: 477 TPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQTSQPCAS 517
P P + S A P VP + P P + + +
Sbjct: 397 APEEPAALASEAHDE--TEPEVPEKAAPIPDPAKPDELAVA 435
Score = 34.6 bits (79), Expect = 0.14
Identities = 23/134 (17%), Positives = 35/134 (26%), Gaps = 8/134 (5%)
Query: 362 PPA--AEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPA 419
P EP+Q + K EV + V+ P+ +
Sbjct: 316 GPVGPGEPNQPDDVAEAVKAEVAEVTDEVAAESVVQVADRDGESTPAVEETSEADIEREQ 375
Query: 420 PVSTPTETAAA--SPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAET 477
P + AA A +P P + + P P P + P +
Sbjct: 376 PGDLAGQAPAAHQVDAEAASAAPEEPAALASEAHDETEPEVPEKAAPIPDPAKP----DE 431
Query: 478 PGAPEPVPSPAAPA 491
P PA P
Sbjct: 432 LAVAGPGDDPAEPD 445
>gnl|CDD|221121 pfam11489, DUF3210, Protein of unknown function (DUF3210). This is
a family of proteins conserved in yeasts. The function
is not known. The Schizosaccharomyces pombe member is
SPBC18E5.07 and the Saccharomyces cerevisiae member is
AIM21.
Length = 671
Score = 37.2 bits (86), Expect = 0.024
Identities = 34/167 (20%), Positives = 50/167 (29%), Gaps = 12/167 (7%)
Query: 344 DSWDNIWKKISQTIEPSKP--PAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSP 401
D W++ + T S P P S+T + T + S P S +
Sbjct: 414 DVWEDSPSSLQDTATVSTPSNPPPRASETPEQETSRSSSEVSLDPHQSELKSEKKKARPE 473
Query: 402 VPAPSTPPVATPTET-----TPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAP 456
V P + TP E ++SP P+ P + S + P
Sbjct: 474 VSKQRFPSRDVWEDAPESQELVTTEETPEEVKSSSPGVTKPAIPSRPKKGKPTSEKRKPP 533
Query: 457 AAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPT 503
P P + + P + E S P P VPA P
Sbjct: 534 PVP-KKPKPQIPARPAKLQKQQAGEEANSSAFKP----KPRVPARPG 575
>gnl|CDD|221173 pfam11702, DUF3295, Protein of unknown function (DUF3295). This
family is conserved in fungi but the function is not
known.
Length = 509
Score = 36.8 bits (85), Expect = 0.024
Identities = 32/132 (24%), Positives = 54/132 (40%), Gaps = 9/132 (6%)
Query: 385 VPEVKPAASVEPV-PVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTP 443
V +K +EP+ P AP TPP + PT P+ ST T T + A + +T
Sbjct: 67 VLSIKEKKDLEPLALPMPNLAPITPPSSEPTPAPPSSESTATRTPDPN-QQALESTESTS 125
Query: 444 VESPAASTPVEAPAAPVDTPVTPVASAP--PTPAETPG-APEPVP----SPAAPAPVETP 496
S + ++ +++ T +S+ P+ + G +P + S A +P
Sbjct: 126 TTSADCNDSEQSSTPNLNSSDTSTSSSGALPSTSVVRGFSPSHISSSYRSTAQLNKAPSP 185
Query: 497 SVPAEPTPTASP 508
+ AEPT
Sbjct: 186 TKSAEPTAAPQA 197
>gnl|CDD|219406 pfam07420, DUF1509, Protein of unknown function (DUF1509). This
family consists of several uncharacterized viral
proteins from the Marek's disease-like viruses. Members
of this family are typically around 400 residues in
length. The function of this family is unknown.
Length = 377
Score = 36.6 bits (84), Expect = 0.025
Identities = 32/155 (20%), Positives = 50/155 (32%), Gaps = 2/155 (1%)
Query: 362 PPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPV 421
P AE + P+ A V P + + P P +
Sbjct: 125 PCFAEVPVFPRPYQSSGDDDGPSTSRGSGVARVRPTVIQHRVDKTRPSDYENHRPRPFAM 184
Query: 422 STPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGA- 480
+ P+ A P P ++ + TP + +D PV P+P T
Sbjct: 185 ANPSWVDEPDAAAQRPPQPGPSGQNRSPRTPTLSNVRVLDAPVATNRGEAPSPPRTDTLD 244
Query: 481 PEPVPSPAAPAPVETPS-VPAEPTPTASPVQTSQP 514
P+P + + A TPS P+ P P +QP
Sbjct: 245 PDPAIAGPSRAVNRTPSPRPSSPPPEIDEEYNAQP 279
>gnl|CDD|235665 PRK05996, motB, flagellar motor protein MotB; Validated.
Length = 423
Score = 36.6 bits (85), Expect = 0.026
Identities = 14/97 (14%), Positives = 20/97 (20%)
Query: 421 VSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGA 480
V T P A + + A +T +A P P A
Sbjct: 190 VEVTTAGDLLPPGQAREQAQGAKSATAAPATVPQAAPLPQAQPKKAATEEELIADAKKAA 249
Query: 481 PEPVPSPAAPAPVETPSVPAEPTPTASPVQTSQPCAS 517
+ AA A P +
Sbjct: 250 TGEPAANAAKAAKPEPMPDDQQKEAEQLQAAIAQAIG 286
Score = 35.1 bits (81), Expect = 0.094
Identities = 15/80 (18%), Positives = 21/80 (26%)
Query: 410 VATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVAS 469
V T P E A + A P+ + P +A A+
Sbjct: 190 VEVTTAGDLLPPGQAREQAQGAKSATAAPATVPQAAPLPQAQPKKAATEEELIADAKKAA 249
Query: 470 APPTPAETPGAPEPVPSPAA 489
A A +P P P
Sbjct: 250 TGEPAANAAKAAKPEPMPDD 269
Score = 31.6 bits (72), Expect = 1.1
Identities = 20/109 (18%), Positives = 31/109 (28%), Gaps = 11/109 (10%)
Query: 350 WKKISQTIEPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPP 409
W K + ++ ++ + ++P TVP+ P P
Sbjct: 186 WSKQVEVTTAGDLLPPGQAREQAQGAKSATAAPATVPQAAPL-----------PQAQPKK 234
Query: 410 VATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAA 458
AT E T AA+ A P P + A A A
Sbjct: 235 AATEEELIADAKKAATGEPAANAAKAAKPEPMPDDQQKEAEQLQAAIAQ 283
Score = 29.3 bits (66), Expect = 5.9
Identities = 14/87 (16%), Positives = 20/87 (22%), Gaps = 2/87 (2%)
Query: 397 VPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAP 456
V V+ PP + A +T P P +
Sbjct: 190 VEVTTAGDL-LPPGQAREQAQGAKSATAAPATVPQAAPLPQAQPKKA-ATEEELIADAKK 247
Query: 457 AAPVDTPVTPVASAPPTPAETPGAPEP 483
AA + +A P P E
Sbjct: 248 AATGEPAANAAKAAKPEPMPDDQQKEA 274
>gnl|CDD|235899 PRK06975, PRK06975, bifunctional uroporphyrinogen-III
synthetase/uroporphyrin-III C-methyltransferase;
Reviewed.
Length = 656
Score = 37.0 bits (86), Expect = 0.028
Identities = 17/55 (30%), Positives = 20/55 (36%)
Query: 426 ETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGA 480
+ AA AAP PS T + T A AA P + PP P G
Sbjct: 267 DAAAQPATAAPAPSRMTDTNDSKSVTSQPAAAAAAPAPPPNPPATPPEPPARRGR 321
Score = 35.5 bits (82), Expect = 0.067
Identities = 13/64 (20%), Positives = 16/64 (25%), Gaps = 2/64 (3%)
Query: 428 AAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSP 487
A A P + P S T + PP P TP P
Sbjct: 264 TWADAAAQPATAA--PAPSRMTDTNDSKSVTSQPAAAAAAPAPPPNPPATPPEPPARRGR 321
Query: 488 AAPA 491
+ A
Sbjct: 322 GSAA 325
Score = 35.5 bits (82), Expect = 0.070
Identities = 13/53 (24%), Positives = 16/53 (30%), Gaps = 5/53 (9%)
Query: 460 VDTPVTPVASAP----PTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASP 508
D P +AP T + P+ AA AP P P P
Sbjct: 266 ADAAAQPATAAPAPSRMTDTNDSKSVTSQPAAAAAAPAP-PPNPPATPPEPPA 317
Score = 35.5 bits (82), Expect = 0.079
Identities = 14/55 (25%), Positives = 20/55 (36%), Gaps = 1/55 (1%)
Query: 448 AASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEP 502
A + A AAP + +T + + P A P+P P P PA
Sbjct: 266 ADAAAQPATAAPAPSRMTD-TNDSKSVTSQPAAAAAAPAPPPNPPATPPEPPARR 319
Score = 33.9 bits (78), Expect = 0.23
Identities = 7/50 (14%), Positives = 10/50 (20%)
Query: 465 TPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQTSQP 514
A PA + P + PA P +
Sbjct: 268 AAAQPATAAPAPSRMTDTNDSKSVTSQPAAAAAAPAPPPNPPATPPEPPA 317
Score = 33.2 bits (76), Expect = 0.40
Identities = 14/54 (25%), Positives = 16/54 (29%), Gaps = 1/54 (1%)
Query: 398 PVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAAST 451
P A P T T + + S P AAA P P T P
Sbjct: 269 AAQPATAAPAPSRMTDTNDSKSVTSQPAAAAAAPA-PPPNPPATPPEPPARRGR 321
Score = 32.4 bits (74), Expect = 0.70
Identities = 14/53 (26%), Positives = 18/53 (33%), Gaps = 1/53 (1%)
Query: 408 PPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPA-ASTPVEAPAAP 459
A P PAP + S + P + P P +TP E PA
Sbjct: 267 DAAAQPATAAPAPSRMTDTNDSKSVTSQPAAAAAAPAPPPNPPATPPEPPARR 319
Score = 31.6 bits (72), Expect = 1.2
Identities = 11/53 (20%), Positives = 16/53 (30%), Gaps = 3/53 (5%)
Query: 391 AASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTP 443
A+ +P +P P+ T + A A P P P P
Sbjct: 267 DAAAQPATAAPAPSRMTDTND---SKSVTSQPAAAAAAPAPPPNPPATPPEPP 316
Score = 28.9 bits (65), Expect = 7.1
Identities = 11/41 (26%), Positives = 15/41 (36%)
Query: 380 SSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAP 420
S T + + +P + PAP P ATP E
Sbjct: 279 PSRMTDTNDSKSVTSQPAAAAAAPAPPPNPPATPPEPPARR 319
>gnl|CDD|135173 PRK04654, PRK04654, sec-independent translocase; Provisional.
Length = 214
Score = 35.9 bits (82), Expect = 0.029
Identities = 37/115 (32%), Positives = 44/115 (38%), Gaps = 10/115 (8%)
Query: 406 STPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAP------ 459
S PVATP E A +S + AA+ TPV +PA P AP
Sbjct: 104 SATPVATPLELAHADLSASAQVDAAAGAEPGAGQAHTPVPAPAPVIAQAQPIAPAPHQTL 163
Query: 460 VDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQTSQP 514
V P + AP A P AP P AP T + P PT +Q QP
Sbjct: 164 VPAPHDTIVPAPHA-AHLPSAPAT-PVSVAPVDAGTSASPTPSEPT--KIQEKQP 214
Score = 31.7 bits (71), Expect = 0.71
Identities = 30/90 (33%), Positives = 36/90 (40%), Gaps = 5/90 (5%)
Query: 398 PVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSP-TTPVESPAASTPVEAP 456
P P PAPV + A +P VP+P T V +P A+ AP
Sbjct: 128 AAGAEPGAGQAHTPVPA---PAPVIAQAQPIAPAPHQTLVPAPHDTIVPAPHAAHLPSAP 184
Query: 457 AAPVDT-PVTPVASAPPTPAETPGAPEPVP 485
A PV PV SA PTP+E E P
Sbjct: 185 ATPVSVAPVDAGTSASPTPSEPTKIQEKQP 214
Score = 30.9 bits (69), Expect = 1.2
Identities = 31/107 (28%), Positives = 41/107 (38%), Gaps = 11/107 (10%)
Query: 416 TTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPA-APVDTPVTPVASAPPTP 474
T+ PV+TP E A A A+ V++ A + P A PV P +A A P
Sbjct: 103 TSATPVATPLELAHADLSASA------QVDAAAGAEPGAGQAHTPVPAPAPVIAQAQPIA 156
Query: 475 AETPGAPEPVPSPA---APAPVETPSVPAEPTPTASPVQTSQPCAST 518
P P AP PS PA P + +PV + T
Sbjct: 157 PAPHQTLVPAPHDTIVPAPHAAHLPSAPATPV-SVAPVDAGTSASPT 202
Score = 28.2 bits (62), Expect = 8.7
Identities = 31/112 (27%), Positives = 39/112 (34%), Gaps = 13/112 (11%)
Query: 364 AAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVST 423
+A P T E S+ V A +PVPAP+ P +A PAP T
Sbjct: 104 SATPVATPLELAHADLSASAQVDAAAGAEPGAGQAHTPVPAPA-PVIAQAQPIAPAPHQT 162
Query: 424 ----------PTETAAASPVAAPVPSPTTPVE--SPAASTPVEAPAAPVDTP 463
P AA P A P PV+ + A+ TP E P
Sbjct: 163 LVPAPHDTIVPAPHAAHLPSAPATPVSVAPVDAGTSASPTPSEPTKIQEKQP 214
>gnl|CDD|219916 pfam08580, KAR9, Yeast cortical protein KAR9. The KAR9 protein in
Saccharomyces cerevisiae is a cytoskeletal protein
required for karyogamy, correct positioning of the
mitotic spindle and for orientation of cytoplasmic
microtubules. KAR9 localises at the shmoo tip in mating
cells and at the tip of the growing bud in anaphase.
Length = 626
Score = 36.8 bits (85), Expect = 0.031
Identities = 28/201 (13%), Positives = 43/201 (21%), Gaps = 21/201 (10%)
Query: 325 EDHIHRQHWEEGHIDYLGKDSWDNIWKKISQTIEPSKPPAAEPSQTTSESTEKKESSPPT 384
DH+ R S PS + S S
Sbjct: 361 VDHVLRDSQSSKIQQIRDSIS------VSGSDYSNPGSSIDTPSSSPSSSVIMTPPDSG- 413
Query: 385 VPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPV 444
P ++ P S + P S ++ S T+P
Sbjct: 414 -PGSNVSSRRVGTPGSKSDRVGAVLLR---RMNIKPTLASIPDEKPSNISVFEDSETSPN 469
Query: 445 ESPAA--STPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAE- 501
S P + P P + T + P+ + + TPS PA
Sbjct: 470 SSTLLRDPPPKKCGEESGHLPNNPFFNKLK---LTLSSIPPLSPRQSIITLPTPSRPASR 526
Query: 502 ----PTPTASPVQTSQPCAST 518
S +
Sbjct: 527 ISSLSLRLGSYSGSIVSPPPY 547
>gnl|CDD|224359 COG1442, RfaJ, Lipopolysaccharide biosynthesis proteins,
LPS:glycosyltransferases [Cell envelope biogenesis,
outer membrane].
Length = 325
Score = 36.1 bits (84), Expect = 0.031
Identities = 37/156 (23%), Positives = 56/156 (35%), Gaps = 21/156 (13%)
Query: 12 LATNDSYALGALVVANSLKRVNTVHDLAI-LITPGVTLAMK---NELLKVFNFVKEVDVF 67
A + +Y + A V SL N ++ G+ K NE + F K V
Sbjct: 7 FAFDKNYLIPAGVSIYSLLEHNRKIFYKFHILVDGLNEEDKKKLNETAEPF---KSFIVL 63
Query: 68 DSRDETNLRLLSRPDLGITFTKIHAWRL------TQYSKCVFLDADVLIVQNCDELFDRE 121
+ D L P F+K+ R QY K ++LD DV+ + ELF +
Sbjct: 64 EVIDIE--PFLDYPPFTKRFSKMVLVRYFLADLFPQYDKMLYLDVDVIFCGDLSELFFID 121
Query: 122 E----LSAAPDAGWPDCFNSGVFVFKPS--ESTYNA 151
L+A D + + K S +NA
Sbjct: 122 LEEYYLAAVRDVFSHYMKEGALRLEKGDLEGSYFNA 157
>gnl|CDD|178806 PRK00030, minC, septum formation inhibitor; Provisional.
Length = 292
Score = 36.2 bits (83), Expect = 0.032
Identities = 28/96 (29%), Positives = 34/96 (35%), Gaps = 6/96 (6%)
Query: 418 PAPVSTPTETAAASPVAAPVPSPTTPVES-PAASTPVEAPAAPVDTPVTPVASAPPTPAE 476
P +STP A AP TPV S P A+ A A P D A
Sbjct: 97 PVELSTPVARAPQVIDTAPPNDVATPVPSVPEATAEAAAKAGPQDDE----ADGEQADEA 152
Query: 477 TPGAPEPVPSPAAPAPVET-PSVPAEPTPTASPVQT 511
PE VP+ AA E P +++ V T
Sbjct: 153 PAHNPESVPTRAARETTEANRPTATPPQSSSALVIT 188
Score = 35.1 bits (80), Expect = 0.082
Identities = 26/105 (24%), Positives = 35/105 (33%), Gaps = 8/105 (7%)
Query: 413 PTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPP 472
P E + P A P P P+ P A+ A A P D A
Sbjct: 97 PVELSTPVARAPQVIDTAPPNDVATPVPSVP----EATAEAAAKAGPQDDE----ADGEQ 148
Query: 473 TPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQTSQPCAS 517
PE VP+ AA E A P ++S + ++P S
Sbjct: 149 ADEAPAHNPESVPTRAARETTEANRPTATPPQSSSALVITKPLRS 193
Score = 32.0 bits (72), Expect = 0.71
Identities = 27/105 (25%), Positives = 38/105 (36%), Gaps = 6/105 (5%)
Query: 410 VATPTETTPAPVSTPTETAAASPVAAPVPS-PTTPVESPAASTPVEAPAAPVDTPVTPVA 468
V T A +TA + VA PVPS P E+ A + P + A P
Sbjct: 96 VPVELSTPVARAPQVIDTAPPNDVATPVPSVPEATAEAAAKAGPQDDEADGEQADEAPAH 155
Query: 469 SAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQTSQ 513
+ P T A E + A P TP + P+++ Q
Sbjct: 156 NPESVP--TRAARE---TTEANRPTATPPQSSSALVITKPLRSGQ 195
Score = 29.7 bits (66), Expect = 3.8
Identities = 20/96 (20%), Positives = 29/96 (30%), Gaps = 2/96 (2%)
Query: 357 IEPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATP--T 414
+E S P A P + + P+VPE A+ + P A
Sbjct: 98 VELSTPVARAPQVIDTAPPNDVATPVPSVPEATAEAAAKAGPQDDEADGEQADEAPAHNP 157
Query: 415 ETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAAS 450
E+ P + T A P S + P S
Sbjct: 158 ESVPTRAARETTEANRPTATPPQSSSALVITKPLRS 193
Score = 29.3 bits (65), Expect = 5.2
Identities = 25/102 (24%), Positives = 36/102 (35%), Gaps = 6/102 (5%)
Query: 391 AASVEPVPVSPVPAPSTPPVAT-PTETTPAPV-STPTETAAASPVAAPVPSPTTPVESPA 448
A + PV +S A + + T P PV S P TA A+ A P ++
Sbjct: 92 DAGLVPVELSTPVARAPQVIDTAPPNDVATPVPSVPEATAEAAAKAGPQDDEADGEQADE 151
Query: 449 AST----PVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPS 486
A V AA T + PP + +P+ S
Sbjct: 152 APAHNPESVPTRAARETTEANRPTATPPQSSSALVITKPLRS 193
Score = 28.5 bits (63), Expect = 9.6
Identities = 13/81 (16%), Positives = 23/81 (28%), Gaps = 6/81 (7%)
Query: 384 TVPEVKPAASVEPVPVSPV--PAPSTPPVATPTETTPAPVSTPTET----AAASPVAAPV 437
+ P + ++ P + V P PS P P + A + V
Sbjct: 101 STPVARAPQVIDTAPPNDVATPVPSVPEATAEAAAKAGPQDDEADGEQADEAPAHNPESV 160
Query: 438 PSPTTPVESPAASTPVEAPAA 458
P+ + A P +
Sbjct: 161 PTRAARETTEANRPTATPPQS 181
>gnl|CDD|222997 PHA03132, PHA03132, thymidine kinase; Provisional.
Length = 580
Score = 36.7 bits (85), Expect = 0.034
Identities = 31/164 (18%), Positives = 44/164 (26%), Gaps = 16/164 (9%)
Query: 333 WEEGHIDYLGKDSWDNIWKKISQTIEPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAA 392
W D + S D + + P +TSE+T + + E
Sbjct: 12 WNYDSSDESPEGSRDE-------NFDAERDDFLTPLGSTSEATSEDDDDLYPPRETGSGG 64
Query: 393 SVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVP-SPTTPVESPAAST 451
V + VP P P T + P S P PVP SP
Sbjct: 65 GVATSTIYTVPRPPRGPEQTLDKPDSLPASREL-----PPGPTPVPPGGFRGASSPRLGA 119
Query: 452 PVEAPA--APVDTPVTPV-ASAPPTPAETPGAPEPVPSPAAPAP 492
+P V+ PV + +E E P
Sbjct: 120 DSTSPRFLYQVNFPVILAPIGESNSSSEELSEEEEHSRPPPSES 163
>gnl|CDD|178165 PLN02550, PLN02550, threonine dehydratase.
Length = 591
Score = 36.4 bits (84), Expect = 0.034
Identities = 15/57 (26%), Positives = 20/57 (35%), Gaps = 4/57 (7%)
Query: 432 PVAAPVPSPTTPVESPAASTP-VEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSP 487
P+ +P+ S S + P P A + ET AP P PSP
Sbjct: 2 SSVGL-PTAGSPLRSHIGSPSKPVVGSTPFSRSRIPAAVD--SADETSMAPPPPPSP 55
Score = 32.6 bits (74), Expect = 0.52
Identities = 15/65 (23%), Positives = 21/65 (32%), Gaps = 8/65 (12%)
Query: 412 TPTETTPAPVSTPTETAAASPVAAPVPS-PTTPVESPAASTPVEAPAAPVDTPVTPVASA 470
+ P S P + SP V S P + PAA + +T + P
Sbjct: 1 MSSVGLPTAGS-PLRSHIGSPSKPVVGSTPFSRSRIPAAV------DSADETSMAPPPPP 53
Query: 471 PPTPA 475
P P
Sbjct: 54 SPLPL 58
>gnl|CDD|221179 pfam11711, Tim54, Inner membrane protein import complex subunit
Tim54. Mitochondrial function depends on the import of
hundreds of different proteins synthesised in the
cytosol. Protein import is a multi-step pathway which
includes the binding of precursor proteins to surface
receptors, translocation of the precursor across one or
both mitochondrial membranes, and folding and assembly
of the imported protein inside the mitochondrion. Most
precursor proteins carry amino-terminal targeting
signals, called pre-sequences, and are imported into
mitochondria via import complexes located in both the
outer and the inner membrane (IM). The IM complex, TIM,
is made up of at least two proteins which mediate
translocation of proteins into the matrix by removing
their signal peptide and another pair of proteins, Tim54
and Tim22, that insert the polytopic proteins, that
carry internal targetting information, into the inner
membrane.
Length = 377
Score = 36.3 bits (84), Expect = 0.035
Identities = 28/103 (27%), Positives = 32/103 (31%), Gaps = 15/103 (14%)
Query: 398 PVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPA 457
P P P T E TP AA SP + T E +AP
Sbjct: 198 PEPPEPTVDEAAPETEVEATP---------AAESPAEPAEETAETTPEETE-----DAPE 243
Query: 458 APVDTPVTPVASAP-PTPAETPGAPEPVPSPAAPAPVETPSVP 499
+ PV P P +P E P AP P P P P
Sbjct: 244 EENNKPVKPPVPKPYISPDEYPSAPLPPELPQLLQPSLVIPFP 286
Score = 34.3 bits (79), Expect = 0.16
Identities = 30/89 (33%), Positives = 35/89 (39%), Gaps = 13/89 (14%)
Query: 432 PVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPE--------- 482
P+ P P P V+ A T VEA A +A TP ET APE
Sbjct: 194 PLDPPEP-PEPTVDEAAPETEVEATPAAESPAEPAEETAETTPEETEDAPEEENNKPVKP 252
Query: 483 PVPSPAAPAPVETPS--VPAEPTPTASPV 509
PVP P +P E PS +P E P
Sbjct: 253 PVPKPY-ISPDEYPSAPLPPELPQLLQPS 280
Score = 33.2 bits (76), Expect = 0.35
Identities = 17/88 (19%), Positives = 30/88 (34%), Gaps = 2/88 (2%)
Query: 357 IEPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTET 416
++P +PP + E+ + + + P + E P AP
Sbjct: 195 LDPPEPPEPTVDEAAPETEVEATPAAES-PAEPAEETAETTPEETEDAPEEENNKPVKPP 253
Query: 417 TPAPVSTPTETAAASPVAAPVPSPTTPV 444
P P +P E +A P+ +P P
Sbjct: 254 VPKPYISPDEYPSA-PLPPELPQLLQPS 280
Score = 30.1 bits (68), Expect = 3.3
Identities = 19/86 (22%), Positives = 28/86 (32%), Gaps = 6/86 (6%)
Query: 358 EPSKPPAAEPSQTTSES---TEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPT 414
+ + T + E E + T PE + + E PV P P +P
Sbjct: 204 TVDEAAPETEVEATPAAESPAEPAEETAETTPE-ETEDAPEEENNKPVKPPVPKPYISPD 262
Query: 415 ETTPAPVSTPTETAAASPVAAPVPSP 440
E AP+ P P +P P
Sbjct: 263 EYPSAPLP-PELPQLLQPS-LVIPFP 286
>gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106). This
family of proteins are found in large numbers in the
Trichomonas vaginalis proteome. The function of this
protein is unknown.
Length = 422
Score = 36.2 bits (83), Expect = 0.035
Identities = 26/104 (25%), Positives = 34/104 (32%), Gaps = 5/104 (4%)
Query: 396 PVPVSPVPAPSTPPVATPTETTPAP--VSTPTETAAASPVAAPVPSPTTPVESPAASTPV 453
P + + A T P PAP T T + AP P+ V++PA V
Sbjct: 159 PAGGTYILASGTYIPPNPPREAPAPGLPKTFTSSHGHRHRHAPKPTQQPTVQNPAQQPTV 218
Query: 454 EAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPS 497
+ PA P P PA+ P P P S
Sbjct: 219 QNPAQQ---PQQQPQQQPVQPAQQPTPQNPAQQPPQTEQGHKRS 259
Score = 33.1 bits (75), Expect = 0.40
Identities = 22/82 (26%), Positives = 27/82 (32%), Gaps = 9/82 (10%)
Query: 440 PTTPVESPAASTPVEAPA--------APVDTPVTPVASAPPTPAETPGAPEPVPSPAAPA 491
P P E+PA P + AP T V + P A +P P
Sbjct: 174 PNPPREAPAPGLPKTFTSSHGHRHRHAPKPTQQPTVQNPAQQPTVQNPAQQPQQQPQQQ- 232
Query: 492 PVETPSVPAEPTPTASPVQTSQ 513
PV+ P P P QT Q
Sbjct: 233 PVQPAQQPTPQNPAQQPPQTEQ 254
Score = 30.8 bits (69), Expect = 2.0
Identities = 26/113 (23%), Positives = 32/113 (28%), Gaps = 18/113 (15%)
Query: 402 VPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVD 461
+PA T +A+ T P P P AP P S AP P
Sbjct: 158 IPAGGTYILASGTYIPPNP-----------PREAPAPGLPKTFTSSHGHRHRHAPK-PTQ 205
Query: 462 TPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQTSQP 514
P PA+ P P P + +PTP Q Q
Sbjct: 206 QP------TVQNPAQQPTVQNPAQQPQQQPQQQPVQPAQQPTPQNPAQQPPQT 252
Score = 29.3 bits (65), Expect = 5.8
Identities = 22/76 (28%), Positives = 30/76 (39%), Gaps = 8/76 (10%)
Query: 447 PAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSP------AAPAPVETPSV-- 498
PA T + A + T + PP A PG P+ S AP P + P+V
Sbjct: 152 PAGGTYIPAGGTYILASGTYIPPNPPREAPAPGLPKTFTSSHGHRHRHAPKPTQQPTVQN 211
Query: 499 PAEPTPTASPVQTSQP 514
PA+ +P Q Q
Sbjct: 212 PAQQPTVQNPAQQPQQ 227
>gnl|CDD|234383 TIGR03895, protease_PatA, cyanobactin maturation protease,
PatA/PatG family. This model describes a protease
domain associated with the maturation of various members
of the cyanobactin family of ribosomally produced,
heavily modified bioactive metabolites. Members include
the PatA protein and C-terminal domain of the PatG
protein of Prochloron didemni, TenA and a region of TenG
from Nostoc spongiaeforme var. tenue, etc.
Length = 602
Score = 36.6 bits (85), Expect = 0.035
Identities = 22/95 (23%), Positives = 29/95 (30%), Gaps = 1/95 (1%)
Query: 386 PEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVE 445
+ + E V + + P + PVAAP T
Sbjct: 230 TMSEGLVTSEQDGVEEASGCGVQGTIESSTSVIPPGRAAEPAPVSIPVAAPGEGATPAAA 289
Query: 446 SPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGA 480
S V A TPV P AS TP++ P A
Sbjct: 290 QIELSAGVLPNAISPATPVRP-ASNGVTPSQAPSA 323
Score = 32.8 bits (75), Expect = 0.46
Identities = 17/89 (19%), Positives = 28/89 (31%), Gaps = 6/89 (6%)
Query: 363 PAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVS 422
+E S + + + V P + PAP + PVA P E +
Sbjct: 236 VTSEQDGVEEASGCGVQGTIESSTSVIPPGR------AAEPAPVSIPVAAPGEGATPAAA 289
Query: 423 TPTETAAASPVAAPVPSPTTPVESPAAST 451
+A P A +P P + +
Sbjct: 290 QIELSAGVLPNAISPATPVRPASNGVTPS 318
Score = 31.6 bits (72), Expect = 1.0
Identities = 19/92 (20%), Positives = 28/92 (30%), Gaps = 7/92 (7%)
Query: 404 APSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPT-TPVESPAAST-PVEAPAA--- 458
+ + +++ V P + PV P A+ PAA
Sbjct: 232 SEGLVTSEQDGVEEASGCGVQGTIESSTSVIPPGRAAEPAPVSIPVAAPGEGATPAAAQI 291
Query: 459 PVDTPVTPVASAPPTPAETPGAPEPVPSPAAP 490
+ V P A +P TP A V AP
Sbjct: 292 ELSAGVLPNAISPATPVR--PASNGVTPSQAP 321
Score = 30.1 bits (68), Expect = 3.4
Identities = 22/102 (21%), Positives = 33/102 (32%), Gaps = 7/102 (6%)
Query: 414 TETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPT 473
T + S AS ++ P AP + P A P
Sbjct: 230 TMSEGLVTSEQDGVEEASGCGVQGTIESSTSVIPPGRAAEPAPVSIPVAA--PGEGATPA 287
Query: 474 PAETPGAPEPVPSPAAPAPVETPSVPAEP--TPTASPVQTSQ 513
A+ + +P+ +PA TP PA TP+ +P Q
Sbjct: 288 AAQIELSAGVLPNAISPA---TPVRPASNGVTPSQAPSAEPQ 326
Score = 28.9 bits (65), Expect = 8.0
Identities = 13/75 (17%), Positives = 17/75 (22%), Gaps = 1/75 (1%)
Query: 445 ESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPA-APAPVETPSVPAEPT 503
+ A+ T +S P P PV P AP TP+
Sbjct: 234 GLVTSEQDGVEEASGCGVQGTIESSTSVIPPGRAAEPAPVSIPVAAPGEGATPAAAQIEL 293
Query: 504 PTASPVQTSQPCAST 518
P
Sbjct: 294 SAGVLPNAISPATPV 308
>gnl|CDD|215533 PLN02983, PLN02983, biotin carboxyl carrier protein of acetyl-CoA
carboxylase.
Length = 274
Score = 36.0 bits (83), Expect = 0.037
Identities = 15/51 (29%), Positives = 21/51 (41%)
Query: 447 PAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPS 497
P PV P + P + PA + A P P+PA+P P + P
Sbjct: 144 PPPPAPVVMMQPPPPHAMPPASPPAAQPAPSAPASSPPPTPASPPPAKAPK 194
Score = 34.4 bits (79), Expect = 0.12
Identities = 29/81 (35%), Positives = 33/81 (40%), Gaps = 10/81 (12%)
Query: 424 PTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEP 483
P A + P P P PAA AP+AP +P AS PP A P P
Sbjct: 144 PPPPAPVVMMQPPPPHAMPPASPPAAQP---APSAPASSPPPTPASPPPAKAPKSSHP-P 199
Query: 484 VPSPAA------PAPVETPSV 498
+ SP A PAP E P V
Sbjct: 200 LKSPMAGTFYRSPAPGEPPFV 220
Score = 33.3 bits (76), Expect = 0.23
Identities = 29/83 (34%), Positives = 40/83 (48%), Gaps = 8/83 (9%)
Query: 377 KKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETT--PAPVSTPTETAAASPVA 434
KKE+ +P+ P A V V + P P + PP + P AP S+P T A+ P A
Sbjct: 137 KKEA----LPQPPPPAPV--VMMQPPPPHAMPPASPPAAQPAPSAPASSPPPTPASPPPA 190
Query: 435 APVPSPTTPVESPAASTPVEAPA 457
S P++SP A T +PA
Sbjct: 191 KAPKSSHPPLKSPMAGTFYRSPA 213
Score = 31.0 bits (70), Expect = 1.5
Identities = 20/61 (32%), Positives = 23/61 (37%), Gaps = 7/61 (11%)
Query: 452 PVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQT 511
P P APV V PP P P A P PA AP +P P +P +
Sbjct: 142 PQPPPPAPV------VMMQPPPPHAMPPASPPAAQPAPSAPASSPP-PTPASPPPAKAPK 194
Query: 512 S 512
S
Sbjct: 195 S 195
>gnl|CDD|235826 PRK06549, PRK06549, acetyl-CoA carboxylase biotin carboxyl carrier
protein subunit; Validated.
Length = 130
Score = 34.4 bits (79), Expect = 0.038
Identities = 11/46 (23%), Positives = 17/46 (36%), Gaps = 1/46 (2%)
Query: 442 TPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSP 487
P ++ A + P P V + P PA + +PSP
Sbjct: 23 APAQAAAPAQPASTPVPVPTEASPQVEAQAPQPA-AAAGADAMPSP 67
Score = 32.1 bits (73), Expect = 0.22
Identities = 11/43 (25%), Positives = 12/43 (27%)
Query: 462 TPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTP 504
A TP P P AP P A P+P
Sbjct: 25 AQAAAPAQPASTPVPVPTEASPQVEAQAPQPAAAAGADAMPSP 67
Score = 32.1 bits (73), Expect = 0.22
Identities = 16/54 (29%), Positives = 20/54 (37%), Gaps = 3/54 (5%)
Query: 426 ETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPG 479
E A + AAP +TPV P + A P A A P+ PG
Sbjct: 20 EIGAPAQAAAPAQPASTPV--PVPTEASPQVEAQAPQPAAA-AGADAMPSPMPG 70
Score = 31.7 bits (72), Expect = 0.29
Identities = 14/49 (28%), Positives = 16/49 (32%), Gaps = 2/49 (4%)
Query: 460 VDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASP 508
+ P A A P P E P A AP P+ A SP
Sbjct: 21 IGAPAQAAAPAQPASTPVPVPTEASPQVEAQAPQ--PAAAAGADAMPSP 67
Score = 31.7 bits (72), Expect = 0.35
Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 3/52 (5%)
Query: 396 PVPVSPVPAPSTPPVATPTETTPAPVS---TPTETAAASPVAAPVPSPTTPV 444
P + P++ PV PTE +P + P A A + +P+P V
Sbjct: 24 PAQAAAPAQPASTPVPVPTEASPQVEAQAPQPAAAAGADAMPSPMPGTILKV 75
Score = 30.9 bits (70), Expect = 0.68
Identities = 11/48 (22%), Positives = 14/48 (29%), Gaps = 4/48 (8%)
Query: 465 TPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQTS 512
P +A P A PVP P +P P + S
Sbjct: 23 APAQAAAPAQP----ASTPVPVPTEASPQVEAQAPQPAAAAGADAMPS 66
Score = 29.4 bits (66), Expect = 2.3
Identities = 11/47 (23%), Positives = 14/47 (29%)
Query: 453 VEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVP 499
+ APA P +P P PAA A + P
Sbjct: 21 IGAPAQAAAPAQPASTPVPVPTEASPQVEAQAPQPAAAAGADAMPSP 67
Score = 29.0 bits (65), Expect = 3.2
Identities = 11/47 (23%), Positives = 18/47 (38%)
Query: 406 STPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTP 452
+ A P + PV PTE + AP P+ ++ + P
Sbjct: 23 APAQAAAPAQPASTPVPVPTEASPQVEAQAPQPAAAAGADAMPSPMP 69
Score = 28.6 bits (64), Expect = 3.5
Identities = 18/60 (30%), Positives = 19/60 (31%), Gaps = 9/60 (15%)
Query: 426 ETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVP 485
E A AA P ASTPV P V A P A P P+P
Sbjct: 19 EEIGAPAQAAAPAQP--------ASTPVPVPTEAS-PQVEAQAPQPAAAAGADAMPSPMP 69
Score = 28.2 bits (63), Expect = 4.4
Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 476 ETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQTSQPCAS 517
E GAP +PA PA P VP E +P Q QP A+
Sbjct: 19 EEIGAPAQAAAPAQPASTPVP-VPTEASPQVEA-QAPQPAAA 58
>gnl|CDD|226406 COG3889, COG3889, Predicted solute binding protein [General
function prediction only].
Length = 872
Score = 36.4 bits (84), Expect = 0.040
Identities = 27/128 (21%), Positives = 41/128 (32%), Gaps = 20/128 (15%)
Query: 387 EVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVES 446
EV PA E P + P T ++T A P + P+ T S
Sbjct: 734 EVFPAG--ENWGFIPTTKRVKVRIMDPASGTGTSITTSGTFTAEVPQS---PTKTETTLS 788
Query: 447 PAA--STPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTP 504
+A +T + V T + T + +P +P+ + T
Sbjct: 789 YSAYSNTSILIETTSVVITKTVTQTQTTTSSPSP------------TQTTSPTQTSTSTT 836
Query: 505 TA-SPVQT 511
T SP QT
Sbjct: 837 TTTSPSQT 844
Score = 33.7 bits (77), Expect = 0.28
Identities = 18/116 (15%), Positives = 34/116 (29%), Gaps = 6/116 (5%)
Query: 342 GKDSWDNIWKKISQTIEPSKPPAAEPSQTTSEST---EKKESSPPTVPEVKPAASVEPVP 398
++W I + P + + T+ T E +S T + +A
Sbjct: 738 AGENWGFIPTTKRVKVRIMDPASGTGTSITTSGTFTAEVPQSPTKTETTLSYSAYSNTSI 797
Query: 399 VSPVPAPSTPPVATPTETT---PAPVSTPTETAAASPVAAPVPSPTTPVESPAAST 451
+ + T T+TT P+P T + T ++ T
Sbjct: 798 LIETTSVVITKTVTQTQTTTSSPSPTQTTSPTQTSTSTTTTTSPSQTTTGGGICGP 853
Score = 33.3 bits (76), Expect = 0.37
Identities = 15/75 (20%), Positives = 25/75 (33%)
Query: 359 PSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTP 418
P+K S ++ E++ + + SP S +T T TT
Sbjct: 780 PTKTETTLSYSAYSNTSILIETTSVVITKTVTQTQTTTSSPSPTQTTSPTQTSTSTTTTT 839
Query: 419 APVSTPTETAAASPV 433
+P T T P+
Sbjct: 840 SPSQTTTGGGICGPI 854
>gnl|CDD|236999 PRK11854, aceF, pyruvate dehydrogenase dihydrolipoyltransacetylase;
Validated.
Length = 633
Score = 36.1 bits (84), Expect = 0.045
Identities = 34/154 (22%), Positives = 39/154 (25%), Gaps = 48/154 (31%)
Query: 404 APSTPPVATPTETTPAPVSTPTETAAASPVAAP---------------------VPSPTT 442
A P A AP + P A V P
Sbjct: 180 AGEAPAAAPAAAEAAAPAAAPAAAAGVKDVNVPDIGGDEVEVTEVMVKVGDKVEAEQSLI 239
Query: 443 PVESPAASTPVEAPAA------------PVDT----PVTPVASAPPTPAETP-GAPEPVP 485
VE AS V AP A V T V A P A A P P
Sbjct: 240 TVEGDKASMEVPAPFAGTVKEIKVNVGDKVKTGSLIMRFEVEGAAPAAAPAKQEAAAPAP 299
Query: 486 -SPAAPAPVETPSVPAEPT---------PTASPV 509
+ A AP P+ AE A+P+
Sbjct: 300 AAAKAEAPAAAPAAKAEGKSEFAENDAYVHATPL 333
>gnl|CDD|237001 PRK11856, PRK11856, branched-chain alpha-keto acid dehydrogenase
subunit E2; Reviewed.
Length = 411
Score = 35.9 bits (84), Expect = 0.045
Identities = 19/119 (15%), Positives = 27/119 (22%), Gaps = 32/119 (26%)
Query: 409 PVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVA 468
+A E A + E A +P P P+ + A+ A A +P
Sbjct: 72 VIAVIEEEGEAEAAAAAEAAPEAPAPEPAPAAAAAAAAAPAAAAAPAAPAAAAAKASPAV 131
Query: 469 --------------------------------SAPPTPAETPGAPEPVPSPAAPAPVET 495
+A A A P AA E
Sbjct: 132 RKLARELGVDLSTVKGSGPGGRITKEDVEAAAAAAAPAAAAAAAAAAAPPAAAAEGEER 190
Score = 34.4 bits (80), Expect = 0.13
Identities = 15/48 (31%), Positives = 18/48 (37%)
Query: 462 TPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPV 509
+AP PA P + AAPA P+ PA ASP
Sbjct: 83 EAAAAAEAAPEAPAPEPAPAAAAAAAAAPAAAAAPAAPAAAAAKASPA 130
Score = 33.2 bits (77), Expect = 0.32
Identities = 25/110 (22%), Positives = 28/110 (25%), Gaps = 29/110 (26%)
Query: 404 APSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVE-----SPAA--------- 449
A PAP P AAA+ A +P P SPA
Sbjct: 81 EAEAAAAAEAAPEAPAPEPAPAAAAAAAAAPAAAAAPAAPAAAAAKASPAVRKLARELGV 140
Query: 450 -------STP--------VEAPAAPVDTPVTPVASAPPTPAETPGAPEPV 484
S P VEA AA A+A P E
Sbjct: 141 DLSTVKGSGPGGRITKEDVEAAAAAAAPAAAAAAAAAAAPPAAAAEGEER 190
Score = 32.5 bits (75), Expect = 0.57
Identities = 22/120 (18%), Positives = 31/120 (25%), Gaps = 28/120 (23%)
Query: 376 EKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVA- 434
E + ++ PA P + A A A ASP
Sbjct: 81 EAEAAAAAEAAPEAPAPEPAPAAAAAAAAAPAAAAAPAAPAAAAAK--------ASPAVR 132
Query: 435 ----------APVPSPTTP--------VESPAASTPVEAPAAPVDTPVTPVASAPPTPAE 476
+ V + P VE+ AA+ A AA P A+A
Sbjct: 133 KLARELGVDLSTV-KGSGPGGRITKEDVEAAAAAAAPAAAAAAAAAAAPPAAAAEGEERV 191
Score = 29.8 bits (68), Expect = 3.6
Identities = 15/76 (19%), Positives = 23/76 (30%), Gaps = 5/76 (6%)
Query: 444 VESPAASTPVE--APA---APVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSV 498
+ SP A T + PV + + + A P PAP +
Sbjct: 48 IPSPVAGTVAKLLVEEGDVVPVGSVIAVIEEEGEAEAAAAAEAAPEAPAPEPAPAAAAAA 107
Query: 499 PAEPTPTASPVQTSQP 514
A P A+P +
Sbjct: 108 AAAPAAAAAPAAPAAA 123
>gnl|CDD|221459 pfam12200, DUF3597, Domain of unknown function (DUF3597). This
family of proteins is found in bacteria, eukaryotes and
viruses. Proteins in this family are typically between
126 and 281 amino acids in length. The function of this
domain is unknown. The structure of this domain has been
found to contain five helices with a long flexible loop
between helices one and two.
Length = 124
Score = 34.2 bits (79), Expect = 0.047
Identities = 13/36 (36%), Positives = 16/36 (44%)
Query: 426 ETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVD 461
E AAA+P A P+ + AA AA VD
Sbjct: 12 EAAAAAPAPAAAPATAPAAAAAAAPAATPPAAASVD 47
Score = 30.8 bits (70), Expect = 0.64
Identities = 7/36 (19%), Positives = 9/36 (25%)
Query: 468 ASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPT 503
A+ P A + A P SV
Sbjct: 16 AAPAPAAAPATAPAAAAAAAPAATPPAAASVDVAAV 51
Score = 30.8 bits (70), Expect = 0.70
Identities = 11/35 (31%), Positives = 14/35 (40%)
Query: 401 PVPAPSTPPVATPTETTPAPVSTPTETAAASPVAA 435
PAP+ P P A + AA+ VAA
Sbjct: 16 AAPAPAAAPATAPAAAAAAAPAATPPAAASVDVAA 50
Score = 29.6 bits (67), Expect = 1.4
Identities = 9/35 (25%), Positives = 11/35 (31%)
Query: 411 ATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVE 445
A PA AAA+ A P V+
Sbjct: 13 AAAAAPAPAAAPATAPAAAAAAAPAATPPAAASVD 47
Score = 28.8 bits (65), Expect = 3.3
Identities = 11/38 (28%), Positives = 11/38 (28%)
Query: 457 AAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVE 494
A P A A A AP P AA V
Sbjct: 12 EAAAAAPAPAAAPATAPAAAAAAAPAATPPAAASVDVA 49
Score = 28.1 bits (63), Expect = 5.7
Identities = 10/37 (27%), Positives = 13/37 (35%)
Query: 419 APVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEA 455
A + A A+ AA + AAS V A
Sbjct: 14 AAAAPAPAAAPATAPAAAAAAAPAATPPAAASVDVAA 50
Score = 28.1 bits (63), Expect = 5.9
Identities = 8/32 (25%), Positives = 10/32 (31%)
Query: 474 PAETPGAPEPVPSPAAPAPVETPSVPAEPTPT 505
A A P +PAA A + P
Sbjct: 15 AAAPAPAAAPATAPAAAAAAAPAATPPAAASV 46
>gnl|CDD|238122 cd00201, WW, Two conserved tryptophans domain; also known as the
WWP or rsp5 domain; around 40 amino acids; functions as
an interaction module in a diverse set of signalling
proteins; binds specific proline-rich sequences but at
low affinities compared to other peptide recognition
proteins such as antibodies and receptors; WW domains
have a single groove formed by a conserved Trp and Tyr
which recognizes a pair of residues of the sequence
X-Pro; variable loops and neighboring domains confer
specificity in this domain; there are five distinct
groups based on binding: 1) PPXY motifs 2) the PPLP
motif; 3) PGM motifs; 4) PSP or PTP motifs; 5) PR
motifs.
Length = 31
Score = 31.7 bits (73), Expect = 0.048
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 274 PPGWEQARTAEGQVYY 289
PPGWE+ +G+VYY
Sbjct: 1 PPGWEERWDPDGRVYY 16
>gnl|CDD|237191 PRK12757, PRK12757, cell division protein FtsN; Provisional.
Length = 256
Score = 35.4 bits (82), Expect = 0.049
Identities = 28/86 (32%), Positives = 31/86 (36%), Gaps = 9/86 (10%)
Query: 395 EPVPVSPVPAPS-TPPVATPTETTPAPVST---PTETAAASPVAAPVPSPTTPVESPAAS 450
+P +S VP TP V T P TA PV P T PV+ P
Sbjct: 98 QPTQLSEVPYNEQTPQVPRSTVQIQQQAQQQQPPATTAQPQPVTPP-RQTTAPVQ-PQTP 155
Query: 451 TPVEAPAAPVDTPVTPVASAPPTPAE 476
PV A PVT AP AE
Sbjct: 156 APVRTQPAA---PVTQAVEAPKVEAE 178
Score = 32.7 bits (75), Expect = 0.33
Identities = 19/68 (27%), Positives = 24/68 (35%), Gaps = 1/68 (1%)
Query: 383 PTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTT 442
TV + A +P + P P TPP T P P T A+PV V +P
Sbjct: 117 STVQIQQQAQQQQPPATTAQPQPVTPPRQTTAPVQPQT-PAPVRTQPAAPVTQAVEAPKV 175
Query: 443 PVESPAAS 450
E
Sbjct: 176 EAEKEKEQ 183
Score = 30.4 bits (69), Expect = 2.1
Identities = 23/118 (19%), Positives = 33/118 (27%), Gaps = 24/118 (20%)
Query: 421 VSTPTETAAASPVAAPV--------------------PSPTTPV----ESPAASTPVEAP 456
V TPTE +A V +P P+ + V ++P
Sbjct: 62 VPTPTEPSAGGEVNSPTQLTDEQRQLLEQMQADMRQQPTQLSEVPYNEQTPQVPRSTVQI 121
Query: 457 AAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQTSQP 514
P +A P P P P PAPV T +P ++
Sbjct: 122 QQQAQQQQPPATTAQPQPVTPPRQTTAPVQPQTPAPVRTQPAAPVTQAVEAPKVEAEK 179
Score = 29.2 bits (66), Expect = 4.3
Identities = 9/62 (14%), Positives = 16/62 (25%)
Query: 394 VEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPV 453
V+ + P T P + P + +PV +P T
Sbjct: 119 VQIQQQAQQQQPPATTAQPQPVTPPRQTTAPVQPQTPAPVRTQPAAPVTQAVEAPKVEAE 178
Query: 454 EA 455
+
Sbjct: 179 KE 180
Score = 28.1 bits (63), Expect = 9.7
Identities = 15/74 (20%), Positives = 20/74 (27%), Gaps = 11/74 (14%)
Query: 353 ISQTIEPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVAT 412
Q + P A +Q P P + A V+P +PV PV
Sbjct: 120 QIQQQAQQQQPPATTAQ-----------PQPVTPPRQTTAPVQPQTPAPVRTQPAAPVTQ 168
Query: 413 PTETTPAPVSTPTE 426
E E
Sbjct: 169 AVEAPKVEAEKEKE 182
>gnl|CDD|217495 pfam03326, Herpes_TAF50, Herpesvirus transcription activation
factor (transactivator). This family includes EBV BRLF1
and similar ORF 50 proteins from other herpesviruses.
Length = 500
Score = 35.5 bits (82), Expect = 0.058
Identities = 37/198 (18%), Positives = 52/198 (26%), Gaps = 35/198 (17%)
Query: 354 SQTIEPSKPPAAEPSQTTSESTEKKESSPPTVPE--------------VKPAASVEPVPV 399
Q+ P +A P Q+ S S S+ E A E +
Sbjct: 225 PQSPLKPSPSSARPQQSESFSDVWPASTQSPREETSAEPLAPASPSSRRPSTAQEEQIAC 284
Query: 400 SPVPAPSTPPV--ATPTETTPAPVSTPTETAAASPVAAPV------------PSPTTPVE 445
S A V P + P P + P
Sbjct: 285 SSPQAEPEQGVQSYVPQSSDSRPSCFPAPSTTQPTFLPPNTNKKAKRDRRPQMVTPKQEG 344
Query: 446 SPAASTPVEAPAAPVDTPVT-PVAS--APPTPAETPG--APEPVPSPAAPAPVETPSVPA 500
A S V P P S +PP+ + A P + PA + P+V
Sbjct: 345 GAAVSQN--HDGGTVRAPRGRPSGSGQSPPSNSPLLSSLADTPSGAAHQPASLLPPAVVQ 402
Query: 501 EPTPTASPVQTSQPCAST 518
+ AS Q P +S
Sbjct: 403 QQLEDASDKQPPTPGSSL 420
Score = 33.6 bits (77), Expect = 0.28
Identities = 34/159 (21%), Positives = 48/159 (30%), Gaps = 13/159 (8%)
Query: 359 PSKPPAAEPSQTT-SESTEKKESSPPTVPEVKPAASVEPVPVSPVPAP--STPPVATPTE 415
P AEP Q S + +S P P P + A P + TP +
Sbjct: 283 ACSSPQAEPEQGVQSYVPQSSDSRPSCFPAPSTTQPTFLPPNTNKKAKRDRRPQMVTPKQ 342
Query: 416 TTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPA 475
A VS + V AP P+ +SP +++P ++ DTP
Sbjct: 343 EGGAAVSQNHD---GGTVRAPRGRPSGSGQSPPSNSP--LLSSLADTPSGAAHQPASLLP 397
Query: 476 ETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQTSQP 514
P V A + P P Q P
Sbjct: 398 -----PAVVQQQLEDASDKQPPTPGSSLVPQPDEQELGP 431
Score = 30.5 bits (69), Expect = 2.6
Identities = 22/124 (17%), Positives = 35/124 (28%), Gaps = 3/124 (2%)
Query: 395 EPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVE 454
+P S P + + + P ST + S SP++ S A +
Sbjct: 224 QPQSPLKPSPSSARPQQSESFSDVWPASTQSPREETSAEPLAPASPSSRRPSTAQEEQIA 283
Query: 455 APAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQTSQP 514
+ P V S P + P P+P+ P P + Q P
Sbjct: 284 CSSPQ-AEPEQGVQSYVPQ--SSDSRPSCFPAPSTTQPTFLPPNTNKKAKRDRRPQMVTP 340
Query: 515 CAST 518
Sbjct: 341 KQEG 344
>gnl|CDD|235571 PRK05704, PRK05704, dihydrolipoamide succinyltransferase;
Validated.
Length = 407
Score = 35.2 bits (82), Expect = 0.066
Identities = 23/96 (23%), Positives = 28/96 (29%), Gaps = 9/96 (9%)
Query: 402 VPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEA---PAA 458
+ A AP AA A P+ AA ++A
Sbjct: 81 AAGAAAAAAAAAAAAAAAPAQAQAAAAAEQSNDALSPA----ARKLAAENGLDASAVKGT 136
Query: 459 PVDTPVTP--VASAPPTPAETPGAPEPVPSPAAPAP 492
VT V +A A P AP AAPAP
Sbjct: 137 GKGGRVTKEDVLAALAAAAAAPAAPAAAAPAAAPAP 172
Score = 32.1 bits (74), Expect = 0.62
Identities = 13/45 (28%), Positives = 14/45 (31%), Gaps = 3/45 (6%)
Query: 445 ESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAA 489
E AA A AA P + AE SPAA
Sbjct: 78 EGAAAGAAAAAAAAAAAAAAAPAQAQAAAAAEQSNDA---LSPAA 119
Score = 29.8 bits (68), Expect = 4.1
Identities = 15/99 (15%), Positives = 31/99 (31%), Gaps = 7/99 (7%)
Query: 368 SQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTP--- 424
+ + + ++ P AA+ +P+ +A + V
Sbjct: 81 AAGAAAAAAAAAAAAAAAPAQAQAAAAAEQSNDA-LSPAARKLAAENGLDASAVKGTGKG 139
Query: 425 ---TETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPV 460
T+ + +AA +P P + A+ P A P
Sbjct: 140 GRVTKEDVLAALAAAAAAPAAPAAAAPAAAPAPLGARPE 178
Score = 29.0 bits (66), Expect = 7.0
Identities = 11/40 (27%), Positives = 13/40 (32%), Gaps = 1/40 (2%)
Query: 467 VASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTA 506
A A A A P+ A A S A +P A
Sbjct: 81 AAGAAAAAAAAAAAAAAAPAQAQAAAAAEQSNDA-LSPAA 119
Score = 28.6 bits (65), Expect = 7.5
Identities = 8/36 (22%), Positives = 12/36 (33%)
Query: 473 TPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASP 508
A A + AAPA + + + SP
Sbjct: 82 AGAAAAAAAAAAAAAAAPAQAQAAAAAEQSNDALSP 117
Score = 28.6 bits (65), Expect = 8.8
Identities = 19/98 (19%), Positives = 30/98 (30%), Gaps = 20/98 (20%)
Query: 368 SQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPA---------------PSTPPVAT 412
+ + + ++ + + AA+ E + PA T
Sbjct: 82 AGAAAAAAAAAAAAAAAPAQAQAAAAAEQSNDALSPAARKLAAENGLDASAVKGTGKGGR 141
Query: 413 PT-----ETTPAPVSTPTETAAASPVAAPVPSPTTPVE 445
T A + P AAA+P AAP P P E
Sbjct: 142 VTKEDVLAALAAAAAAPAAPAAAAPAAAPAPLGARPEE 179
>gnl|CDD|177328 PHA01929, PHA01929, putative scaffolding protein.
Length = 306
Score = 35.0 bits (80), Expect = 0.067
Identities = 24/90 (26%), Positives = 27/90 (30%), Gaps = 16/90 (17%)
Query: 420 PVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPG 479
P A P AAP P P P PV P P P
Sbjct: 9 PPGLAGLVANVPPAAAPTPQP--------------NPVIQPQAPVQPGQPGAPQQLAIP- 53
Query: 480 APEPVPSPAAP-APVETPSVPAEPTPTASP 508
+P P P + P PA+P P A P
Sbjct: 54 TQQPQPVPTSAMTPHVVQQAPAQPAPAAPP 83
Score = 33.5 bits (76), Expect = 0.24
Identities = 20/103 (19%), Positives = 25/103 (24%), Gaps = 5/103 (4%)
Query: 405 PSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPV 464
P + AP P P + P P + + V
Sbjct: 10 PGLAGLVANVPPAAAPTPQPNPVIQPQAPVQPGQPGAPQQLAIPTQQPQPVPTSAMTPHV 69
Query: 465 TPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTAS 507
A A P PA P A P +E P PA
Sbjct: 70 VQQAPAQPAPAAP-----PAAGAALPEALEVPPPPAFTPNGEI 107
Score = 28.9 bits (64), Expect = 7.3
Identities = 21/48 (43%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Query: 467 VASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQTSQP 514
VA+ PP A TP P PV P AP P P P A P Q QP
Sbjct: 16 VANVPPAAAPTP-QPNPVIQPQAPV---QPGQPGAPQQLAIPTQQPQP 59
>gnl|CDD|163521 TIGR03809, TIGR03809, TIGR03809 family protein. This protein
family contains proteins with a median length of about
175, including a strongly conserved N-terminal region of
about 55 amino acids, a conserved extreme C-terminal
region of about 15 amino acids, and highly variable
sequence in between the two. Members are found
invariably with a member of family TIGR03808.
Length = 168
Score = 34.0 bits (78), Expect = 0.072
Identities = 23/84 (27%), Positives = 27/84 (32%), Gaps = 3/84 (3%)
Query: 432 PVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVT--PVASAPPTPAETPGAPEPVPSPAA 489
P AP + VE + P PA+ V A+A P A A S A
Sbjct: 78 PPRAPFYAADETVEPRRFAPPAALPASA-PAIVALPEEAAAEPRAAPDVPAEPNDASDAD 136
Query: 490 PAPVETPSVPAEPTPTASPVQTSQ 513
A V P V E Q Q
Sbjct: 137 VAEVAEPDVVPEWQHALDLDQLQQ 160
Score = 31.7 bits (72), Expect = 0.56
Identities = 17/84 (20%), Positives = 23/84 (27%)
Query: 381 SPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSP 440
S + P + V P A + PA V+ P E AA A VP+
Sbjct: 69 SWLGRNKKLPPRAPFYAADETVEPRRFAPPAALPASAPAIVALPEEAAAEPRAAPDVPAE 128
Query: 441 TTPVESPAASTPVEAPAAPVDTPV 464
+ E P
Sbjct: 129 PNDASDADVAEVAEPDVVPEWQHA 152
Score = 29.4 bits (66), Expect = 3.0
Identities = 24/88 (27%), Positives = 26/88 (29%), Gaps = 6/88 (6%)
Query: 425 TETAAASPVAAPVPSPTTPVESPAASTPVEAPAAP--VDTPVTPVASAPPTPAETPGAPE 482
T A+ A P P S P AP P A AP
Sbjct: 50 TWRGLATREATPDNRPVDL--SWLGRNKKLPPRAPFYAADETVEPRRFAPPAALPASAPA 107
Query: 483 PVPSP--AAPAPVETPSVPAEPTPTASP 508
V P AA P P VPAEP +
Sbjct: 108 IVALPEEAAAEPRAAPDVPAEPNDASDA 135
>gnl|CDD|220749 pfam10428, SOG2, RAM signalling pathway protein. SOG2 proteins in
Saccharomyces cerevisiae are involved in cell separation
and cytokinesis.
Length = 419
Score = 35.1 bits (81), Expect = 0.074
Identities = 23/134 (17%), Positives = 42/134 (31%), Gaps = 8/134 (5%)
Query: 348 NIWKKISQTIEPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEP--VPVSPVPAP 405
N W + ++ K A S ++ + S V P P P S
Sbjct: 143 NAWSSLGPPLQHRKRDAVTASPSSMIARNTPISDRLRPRSVTPTRGRRPSSSPRSLSNPT 202
Query: 406 STPPVATPTETTPAP-----VSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPV 460
+ + TT P ++ + T ++S + + S TP S + +
Sbjct: 203 TLESPSNLQVTTDVPPPYSNGTSRSSTMSSSANLSIISSLATP-RSGESFRSTPTSGSSS 261
Query: 461 DTPVTPVASAPPTP 474
PV+ + A
Sbjct: 262 INPVSGLDEAEEDR 275
Score = 30.5 bits (69), Expect = 2.1
Identities = 23/127 (18%), Positives = 34/127 (26%), Gaps = 12/127 (9%)
Query: 382 PPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTP--------APVSTPTETAAASP- 432
P + K A P TP +P S T SP
Sbjct: 149 GPPLQHRKRDAVTASPSSMIARNTPISDRLRPRSVTPTRGRRPSSSPRSLSNPTTLESPS 208
Query: 433 ---VAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAA 489
V VP P + S +++ A + + + TP + T G+ P
Sbjct: 209 NLQVTTDVPPPYSNGTSRSSTMSSSANLSIISSLATPRSGESFRSTPTSGSSSINPVSGL 268
Query: 490 PAPVETP 496
E
Sbjct: 269 DEAEEDR 275
>gnl|CDD|235709 PRK06132, PRK06132, hypothetical protein; Provisional.
Length = 359
Score = 35.0 bits (81), Expect = 0.075
Identities = 16/70 (22%), Positives = 23/70 (32%), Gaps = 7/70 (10%)
Query: 406 STPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVT 465
T + + E P V+ P + AP +P S AA+ A AP
Sbjct: 164 GTTVIISDGEVAPVEVAHPL-------LLAPKAAPAPAPASDAAANGRPAAPAPAPAEAA 216
Query: 466 PVASAPPTPA 475
+ PT
Sbjct: 217 WADADAPTGP 226
Score = 31.6 bits (72), Expect = 1.1
Identities = 20/63 (31%), Positives = 26/63 (41%), Gaps = 5/63 (7%)
Query: 441 TTPVESPAASTPVEAP----AAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETP 496
TT + S PVE AP P P ++ P AP P P+ AA A + P
Sbjct: 165 TTVIISDGEVAPVEVAHPLLLAPKAAP-APAPASDAAANGRPAAPAPAPAEAAWADADAP 223
Query: 497 SVP 499
+ P
Sbjct: 224 TGP 226
>gnl|CDD|223029 PHA03264, PHA03264, envelope glycoprotein D; Provisional.
Length = 416
Score = 35.4 bits (81), Expect = 0.077
Identities = 27/100 (27%), Positives = 33/100 (33%), Gaps = 6/100 (6%)
Query: 422 STPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAP 481
S E A +P P E+ PVE A +T P G
Sbjct: 261 SKGYEPPPAPSGGSPAPPGDDRPEAKPEPGPVEDGAPGRETGGEGEGPEPAGRDGAAGG- 319
Query: 482 EPVPSPAAPAPVET-----PSVPAEPTPTASPVQTSQPCA 516
EP P P PAP PS+ A P +P + P A
Sbjct: 320 EPKPGPPRPAPDADRPEGWPSLEAITFPPPTPATPAVPRA 359
Score = 33.4 bits (76), Expect = 0.25
Identities = 29/116 (25%), Positives = 33/116 (28%), Gaps = 11/116 (9%)
Query: 388 VKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASP-----VAAPVPSPTT 442
V P E P PAPS A P + P P +P P P
Sbjct: 253 VVPPYFEESKGYEPPPAPSGGSPAPPGDDRPEAKPEPGPVEDGAPGRETGGEGEGPEPAG 312
Query: 443 PVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSV 498
+ A P P P P A P P P+PA PA V
Sbjct: 313 R-DGAAGGEPKPGPPRP-----APDADRPEGWPSLEAITFPPPTPATPAVPRARPV 362
Score = 33.1 bits (75), Expect = 0.39
Identities = 24/103 (23%), Positives = 30/103 (29%), Gaps = 7/103 (6%)
Query: 362 PPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPV 421
PPA ++ E+ P P A E P P+ A E P P
Sbjct: 267 PPAPSGGSPAPPGDDRPEAKPEPGPVEDGAPGRETGGEGEGPEPAGRDGAAGGEPKPGP- 325
Query: 422 STPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPV 464
A P P+ + TP PA P PV
Sbjct: 326 -----PRPAPDADRPEGWPSLEAITFPPPTPA-TPAVPRARPV 362
>gnl|CDD|226414 COG3898, COG3898, Uncharacterized membrane-bound protein [Function
unknown].
Length = 531
Score = 35.2 bits (81), Expect = 0.083
Identities = 21/105 (20%), Positives = 32/105 (30%), Gaps = 13/105 (12%)
Query: 387 EVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVES 446
E + A + P+P +P + P PV+ ET + PV +
Sbjct: 435 EDRDEAIMAPLPEAPAKSAIEEPADELE-----PVAEAAETEGKGTDRSARAVKPIPVIA 489
Query: 447 PAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPA 491
PAA PA+ PP + PG +
Sbjct: 490 PAAY-----PASAKTAEPAGFFGRPP---DDPGVRRDGAAEKRAT 526
Score = 34.4 bits (79), Expect = 0.16
Identities = 29/100 (29%), Positives = 36/100 (36%), Gaps = 15/100 (15%)
Query: 419 APVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPV-------TPVASAP 471
APVS T A AP P+E + P AP + + PVA A
Sbjct: 409 APVSPVTGRLDAFEWKAPTGQLAHPIEDRDEAIMAPLPEAPAKSAIEEPADELEPVAEAA 468
Query: 472 PT------PAETPGAPEPVPSPAA-PAPVETPSVPAEPTP 504
T + P PV +PAA PA +T PA
Sbjct: 469 ETEGKGTDRSARAVKPIPVIAPAAYPASAKTA-EPAGFFG 507
Score = 31.7 bits (72), Expect = 0.89
Identities = 20/102 (19%), Positives = 31/102 (30%), Gaps = 8/102 (7%)
Query: 365 AEPSQTTSESTEKKES--SPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETT----- 417
A Q ++ E+ +P K A + PV A + T+ +
Sbjct: 425 APTGQLAHPIEDRDEAIMAPLPEAPAKSAIEEPADELEPV-AEAAETEGKGTDRSARAVK 483
Query: 418 PAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAP 459
P PV P A++ A P P + P A
Sbjct: 484 PIPVIAPAAYPASAKTAEPAGFFGRPPDDPGVRRDGAAEKRA 525
>gnl|CDD|177614 PHA03377, PHA03377, EBNA-3C; Provisional.
Length = 1000
Score = 35.4 bits (81), Expect = 0.086
Identities = 33/172 (19%), Positives = 44/172 (25%), Gaps = 28/172 (16%)
Query: 360 SKPPAAEPSQTTSESTEKKESSP---PTVPEVKPAASVEPVPVSPVPAPSTPP------- 409
S P PS S E +P TV +P S V + P P PS
Sbjct: 448 STPERPGPSDQPSVPVEPAHLTPVEHTTVILHQPPQSPPTVAIKPAPPPSRRRRGACVVY 507
Query: 410 ------------------VATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAAST 451
V P + + A P + P AS
Sbjct: 508 DDDIIEVIDVETTEEEESVTQPAKPHRKVQDGFQRSGRRQKRATPPKVSPSDRGPPKASP 567
Query: 452 PVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPT 503
PV AP + + ++ P A P P P P+
Sbjct: 568 PVMAPPSTGPRVMATPSTGPRDMAPPSTGPRQQAKCKDGPPASGPHEKQPPS 619
Score = 33.5 bits (76), Expect = 0.36
Identities = 33/183 (18%), Positives = 46/183 (25%), Gaps = 26/183 (14%)
Query: 358 EPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETT 417
+P P P + T K S E + P P P P TP E T
Sbjct: 415 KPRTLPWPTPKTHPVKRTLVKTSGRSDEAEQAQSTPERPGPSDQPSVPVEPAHLTPVEHT 474
Query: 418 PAPVSTPTETAAASPVAAPVPSPTTP----------------VESPAASTPVEAPAAPVD 461
+ P ++ + P VE+ V PA P
Sbjct: 475 TVILHQPPQSPPTVAIKPAPPPSRRRRGACVVYDDDIIEVIDVETTEEEESVTQPAKPHR 534
Query: 462 TPVT--------PVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQTSQ 513
+ PP + + P P P P TP+ P +
Sbjct: 535 KVQDGFQRSGRRQKRATPPKVSPSDRGPPKASPPVMAPPSTGP--RVMATPSTGPRDMAP 592
Query: 514 PCA 516
P
Sbjct: 593 PST 595
Score = 31.9 bits (72), Expect = 1.1
Identities = 35/130 (26%), Positives = 49/130 (37%), Gaps = 12/130 (9%)
Query: 390 PAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAA 449
P++ +P S P PS P + A + P+E + S + SPT P+ S
Sbjct: 666 PSSRRQPATQSTPPRPSWLPSVFVLPSVDAGRAQPSEESHLSSM-----SPTQPI-SHEE 719
Query: 450 STPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAP-VETPSVPAEP-----T 503
E P P+D + P + PP+ E + AP P P P P
Sbjct: 720 QPRYEDPDDPLDLSLHPDQAPPPSHQAPYSGHEEPQAQQAPYPGYWEPRPPQAPYLGYQE 779
Query: 504 PTASPVQTSQ 513
P A VQ S
Sbjct: 780 PQAQGVQVSS 789
>gnl|CDD|114270 pfam05539, Pneumo_att_G, Pneumovirinae attachment membrane
glycoprotein G.
Length = 408
Score = 35.0 bits (80), Expect = 0.093
Identities = 31/116 (26%), Positives = 42/116 (36%), Gaps = 7/116 (6%)
Query: 368 SQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPT-----ETTPAPVS 422
S T T+ +S P+ +P S SP PST T E T +
Sbjct: 214 SSTEPVGTQGTTTSSNPEPQTEPPPSQRGPSGSPQHPPSTTSQDQSTTGDGQEHTQRRKT 273
Query: 423 TPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETP 478
P + SP + P PTT + TP P A + +P S+PP P
Sbjct: 274 PPATSNRRSPHSTATPPPTTKRQETGRPTP--RPTATTQSGSSPPHSSPPGVQANP 327
Score = 31.9 bits (72), Expect = 0.74
Identities = 34/160 (21%), Positives = 52/160 (32%), Gaps = 15/160 (9%)
Query: 362 PPAAEPSQTTSESTEKKESSPPT--VPEVKPAASVEPVPVSPVPAPSTPPVAT------- 412
A S+TTS TE + P+ P+ +PA + ST PV T
Sbjct: 169 KTAVTTSKTTSWPTEVSHPTYPSQVTPQSQPATQGHQTATANQRLSSTEPVGTQGTTTSS 228
Query: 413 --PTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASA 470
+T P P + P + +T + + + P A + +
Sbjct: 229 NPEPQTEPPPSQRGPSGSPQHPPSTTSQDQSTTGDGQEHTQRRKTPPATSNRRSPHSTAT 288
Query: 471 PPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQ 510
PP + P P P A T S + P + VQ
Sbjct: 289 PPPTTKRQETGRPTPRPTA----TTQSGSSPPHSSPPGVQ 324
>gnl|CDD|220401 pfam09786, CytochromB561_N, Cytochrome B561, N terminal. Members
of this family are found in the N terminal region of
cytochrome B561, as well as in various other putative
uncharacterized proteins.
Length = 559
Score = 35.1 bits (81), Expect = 0.096
Identities = 24/106 (22%), Positives = 42/106 (39%), Gaps = 4/106 (3%)
Query: 388 VKPAASVEPVPVSPVPAPSTPPVATPTETTPAPV---STPTETAAASPVAAPVPSPTTPV 444
VK S V +P +TP T+ V S+ +++ + S + SP++ +
Sbjct: 103 VKAKDSQFTVVSQAKKSPPASKTSTPMNTSEPLVPGHSSFSDSPSRSASPSRKFSPSSTI 162
Query: 445 ESPAASTPVEAPAAPVDTPVTPVASAPPTPAET-PGAPEPVPSPAA 489
+ TP PA+P + +P S+ P + SP A
Sbjct: 163 QQSPQLTPSNKPASPSSSYQSPSYSSSLGPVNSSGNRSNLRSSPWA 208
>gnl|CDD|219419 pfam07462, MSP1_C, Merozoite surface protein 1 (MSP1) C-terminus.
This family represents the C-terminal region of
merozoite surface protein 1 (MSP1) which are found in a
number of Plasmodium species. MSP-1 is a 200-kDa protein
expressed on the surface of the P. vivax merozoite.
MSP-1 of Plasmodium species is synthesised as a
high-molecular-weight precursor and then processed into
several fragments. At the time of red cell invasion by
the merozoite, only the 19-kDa C-terminal fragment
(MSP-119), which contains two epidermal growth
factor-like domains, remains on the surface. Antibodies
against MSP-119 inhibit merozoite entry into red cells,
and immunisation with MSP-119 protects monkeys from
challenging infections. Hence, MSP-119 is considered a
promising vaccine candidate.
Length = 574
Score = 34.9 bits (80), Expect = 0.098
Identities = 10/46 (21%), Positives = 15/46 (32%)
Query: 463 PVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASP 508
P A T TP + PSP + P + + T +
Sbjct: 259 PKGTTQEAKVTTVVTPPQADAAPSPLSVRPAGSSGSASGSTQIPTS 304
Score = 34.9 bits (80), Expect = 0.12
Identities = 17/83 (20%), Positives = 28/83 (33%), Gaps = 5/83 (6%)
Query: 380 SSPPTVPEVKPA--ASVEPVP-VSPVPAPSTPPVATPTETTPAPVS-TPTETAAASPVAA 435
++P PEV A E +P + A T V TP + AP + ++ +
Sbjct: 239 TNPENNPEVNEALEQYKELLPKGTTQEAKVTT-VVTPPQADAAPSPLSVRPAGSSGSASG 297
Query: 436 PVPSPTTPVESPAASTPVEAPAA 458
PT+ + E
Sbjct: 298 STQIPTSGSVLGPGAAATELQQV 320
Score = 32.6 bits (74), Expect = 0.57
Identities = 13/59 (22%), Positives = 17/59 (28%), Gaps = 4/59 (6%)
Query: 458 APVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQTSQPCA 516
A V T VTP A +P + P S + A T + T
Sbjct: 266 AKVTTVVTP---PQADAAPSPLSVRPAGSSGS-ASGSTQIPTSGSVLGPGAAATELQQV 320
Score = 31.1 bits (70), Expect = 1.6
Identities = 10/50 (20%), Positives = 14/50 (28%), Gaps = 1/50 (2%)
Query: 427 TAAASPVAAPVPSPTTPVESPAASTPVEAP-AAPVDTPVTPVASAPPTPA 475
T A P SP + P + +A T + S A
Sbjct: 263 TQEAKVTTVVTPPQADAAPSPLSVRPAGSSGSASGSTQIPTSGSVLGPGA 312
Score = 31.1 bits (70), Expect = 1.7
Identities = 16/62 (25%), Positives = 20/62 (32%), Gaps = 1/62 (1%)
Query: 441 TTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAP-EPVPSPAAPAPVETPSVP 499
T + TP +A AAP V P S+ T V P A A V
Sbjct: 263 TQEAKVTTVVTPPQADAAPSPLSVRPAGSSGSASGSTQIPTSGSVLGPGAAATELQQVVQ 322
Query: 500 AE 501
+
Sbjct: 323 LQ 324
Score = 30.7 bits (69), Expect = 2.2
Identities = 15/85 (17%), Positives = 18/85 (21%), Gaps = 12/85 (14%)
Query: 409 PVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAA-------STPVEAPAAPVD 461
P T E V TP AAP P P S + T
Sbjct: 259 PKGTTQEAKVTTVVTPP-----QADAAPSPLSVRPAGSSGSASGSTQIPTSGSVLGPGAA 313
Query: 462 TPVTPVASAPPTPAETPGAPEPVPS 486
E + +P
Sbjct: 314 ATELQQVVQLQNYDEEDDSLVVLPI 338
Score = 29.9 bits (67), Expect = 4.1
Identities = 13/64 (20%), Positives = 19/64 (29%), Gaps = 5/64 (7%)
Query: 367 PSQTTSESTEKKESSPPTVP-----EVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPV 421
+ E E E +P E K V P P+P + A + +
Sbjct: 240 NPENNPEVNEALEQYKELLPKGTTQEAKVTTVVTPPQADAAPSPLSVRPAGSSGSASGST 299
Query: 422 STPT 425
PT
Sbjct: 300 QIPT 303
>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho;
Provisional.
Length = 672
Score = 34.9 bits (81), Expect = 0.099
Identities = 19/86 (22%), Positives = 26/86 (30%), Gaps = 5/86 (5%)
Query: 425 TETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPV 484
AAA+ AAP + + AA+ E PAA A A PA A
Sbjct: 62 GAAAAAATPAAPAAAARRAARAAAAARQAEQPAAE-----AAAAKAEAAPAARAAAAAAA 116
Query: 485 PSPAAPAPVETPSVPAEPTPTASPVQ 510
+ +AP +
Sbjct: 117 EAASAPEAAQARERRERGEAARRGAA 142
>gnl|CDD|235895 PRK06945, flgK, flagellar hook-associated protein FlgK; Validated.
Length = 651
Score = 35.0 bits (81), Expect = 0.11
Identities = 21/84 (25%), Positives = 31/84 (36%), Gaps = 2/84 (2%)
Query: 411 ATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASA 470
A+P + +T T + V++ P P+ + P T VT VA
Sbjct: 437 ASPVRASAGSTNTGTGAISQGSVSSGYPLPSGTTTLTYDAATGTLSGFPAGTTVT-VAGT 495
Query: 471 PPTPAETPGAPEPVP-SPAAPAPV 493
PPT A PVP + A +
Sbjct: 496 PPTSVTITPATTPVPYTSGAGISL 519
>gnl|CDD|130689 TIGR01628, PABP-1234, polyadenylate binding protein, human types 1,
2, 3, 4 family. These eukaryotic proteins recognize the
poly-A of mRNA and consists of four tandem RNA
recognition domains at the N-terminus (rrm: pfam00076)
followed by a PABP-specific domain (pfam00658) at the
C-terminus. The protein is involved in the transport of
mRNA's from the nucleus to the cytoplasm. There are four
paralogs in Homo sapiens which are expressed in testis
(GP:11610605_PABP3 ), platelets (SP:Q13310_PABP4 ),
broadly expressed (SP:P11940_PABP1) and of unknown
tissue range (SP:Q15097_PABP2).
Length = 562
Score = 34.8 bits (80), Expect = 0.11
Identities = 22/124 (17%), Positives = 35/124 (28%), Gaps = 7/124 (5%)
Query: 396 PVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEA 455
+ P+ +P + P P P + +P+P P + A
Sbjct: 381 RMRQLPMGSPMGGAMGQPPYYGQGPQQQFNGQPLGWPRMSMMPTPMGPGGPLRPNGL--A 438
Query: 456 PAAPVDTPVTPVASAPPTPA-----ETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQ 510
P V P +A P P S P P T S + A +
Sbjct: 439 PMNAVRAPSRNAQNAAQKPPMQPVMYPPNYQSLPLSQDLPQPQSTASQGGQNKKLAQVLA 498
Query: 511 TSQP 514
++ P
Sbjct: 499 SATP 502
>gnl|CDD|236658 PRK10153, PRK10153, DNA-binding transcriptional activator CadC;
Provisional.
Length = 517
Score = 34.6 bits (80), Expect = 0.11
Identities = 13/52 (25%), Positives = 18/52 (34%)
Query: 461 DTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQTS 512
+ +S PP P P EP S A P + +P S T+
Sbjct: 111 EGEEILASSPPPIPEAVPATAEPSESANAQFPAPPLTRAVCQSPAKSKRFTT 162
Score = 32.3 bits (74), Expect = 0.57
Identities = 19/77 (24%), Positives = 26/77 (33%), Gaps = 15/77 (19%)
Query: 384 TVPE--VKPAASV-----EPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAP 436
TVP+ K A V E +P P A P P+ A A A P
Sbjct: 92 TVPKRGYKLVAPVIWYSEEEGEEILASSPPPIPEAVPATAEPSES------ANAQFPAPP 145
Query: 437 VPS--PTTPVESPAAST 451
+ +P +S +T
Sbjct: 146 LTRAVCQSPAKSKRFTT 162
Score = 30.4 bits (69), Expect = 2.3
Identities = 10/48 (20%), Positives = 14/48 (29%), Gaps = 2/48 (4%)
Query: 454 EAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAE 501
E +P + P T + A PA P PA+
Sbjct: 111 EGEEILASSPPPIPEAVPATAEPSESA--NAQFPAPPLTRAVCQSPAK 156
Score = 29.6 bits (67), Expect = 4.3
Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 3/56 (5%)
Query: 371 TSESTEKK-ESSPPTVPEVKPAASVEPVPVSPVPAPSTPP-VATPTETTPAPVSTP 424
+ E E+ SSPP +PE PA + EP + P+ P A + T
Sbjct: 108 SEEEGEEILASSPPPIPEAVPATA-EPSESANAQFPAPPLTRAVCQSPAKSKRFTT 162
Score = 29.2 bits (66), Expect = 6.0
Identities = 8/61 (13%), Positives = 16/61 (26%), Gaps = 3/61 (4%)
Query: 397 VPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAP 456
PV + + P + A P+P P+ +P ++
Sbjct: 102 APVIWYSEEEGEEILASSPPPIPEA-VPATAEPSESANAQFPAP--PLTRAVCQSPAKSK 158
Query: 457 A 457
Sbjct: 159 R 159
>gnl|CDD|183558 PRK12495, PRK12495, hypothetical protein; Provisional.
Length = 226
Score = 34.1 bits (78), Expect = 0.11
Identities = 21/102 (20%), Positives = 32/102 (31%), Gaps = 3/102 (2%)
Query: 362 PPAAEPSQTTSESTEKKESSPPTVPEV--KPAASVEPVPVSPVPAPSTPPVATPTETTPA 419
A PS S+++ ++ P E + A + A + PP P
Sbjct: 82 AEATAPSDAGSQASPDDDAQPAAEAEAADQSAPPEASSTSATDEAATDPPATAAARDGPT 141
Query: 420 PVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVD 461
P + A +P P E P STP A +
Sbjct: 142 P-DPTAQPATPDERRSPRQRPPVSGEPPTPSTPDAHVAGTLQ 182
Score = 33.3 bits (76), Expect = 0.20
Identities = 22/95 (23%), Positives = 29/95 (30%), Gaps = 3/95 (3%)
Query: 425 TETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPT-PAETPGAPEP 483
T + A A+P E+ AA A+ P T A P+P
Sbjct: 85 TAPSDAGSQASPDDDAQPAAEAEAADQSAPPEASSTSATDEAATDPPATAAARDGPTPDP 144
Query: 484 VPSPAAPAPVETPSVPAEPTPTASPVQTSQPCAST 518
PA P +P P + P S P A
Sbjct: 145 TAQPATPDERRSPRQ--RPPVSGEPPTPSTPDAHV 177
Score = 33.3 bits (76), Expect = 0.21
Identities = 25/110 (22%), Positives = 33/110 (30%), Gaps = 1/110 (0%)
Query: 403 PAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDT 462
+ P A + E AA A P S T+ + A P A A T
Sbjct: 82 AEATAPSDAGSQASPDDDAQPAAEAEAADQSAPPEASSTSATDEAATDPPATAAARDGPT 141
Query: 463 PVTPVASAPPTPAETPGAPEPVPS-PAAPAPVETPSVPAEPTPTASPVQT 511
P A P +P PV P P+ + S V+T
Sbjct: 142 PDPTAQPATPDERRSPRQRPPVSGEPPTPSTPDAHVAGTLQAARESLVET 191
Score = 31.0 bits (70), Expect = 1.1
Identities = 21/96 (21%), Positives = 26/96 (27%), Gaps = 6/96 (6%)
Query: 407 TPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTP 466
P++ AA AA +P P AS+ A D P T
Sbjct: 81 GAEATAPSDAGSQASPDDDAQPAAEAEAADQSAP------PEASSTSATDEAATDPPATA 134
Query: 467 VASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEP 502
A PTP T P + P P
Sbjct: 135 AARDGPTPDPTAQPATPDERRSPRQRPPVSGEPPTP 170
Score = 29.1 bits (65), Expect = 5.3
Identities = 23/102 (22%), Positives = 27/102 (26%)
Query: 413 PTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPP 472
PT P A A PS SP A A D P AS+
Sbjct: 62 PTCQQPVTEDGAAGDDAGDGAEATAPSDAGSQASPDDDAQPAAEAEAADQSAPPEASSTS 121
Query: 473 TPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQTSQP 514
E P + + + PA P SP Q
Sbjct: 122 ATDEAATDPPATAAARDGPTPDPTAQPATPDERRSPRQRPPV 163
>gnl|CDD|233366 TIGR01348, PDHac_trf_long, pyruvate dehydrogenase complex
dihydrolipoamide acetyltransferase, long form. This
model describes a subset of pyruvate dehydrogenase
complex dihydrolipoamide acetyltransferase specifically
close by both phylogenetic and per cent identity (UPGMA)
trees. Members of this set include two or three copies
of the lipoyl-binding domain. E. coli AceF is a member
of this model, while mitochondrial and some other
bacterial forms belong to a separate model [Energy
metabolism, Pyruvate dehydrogenase].
Length = 546
Score = 34.9 bits (80), Expect = 0.12
Identities = 17/61 (27%), Positives = 21/61 (34%), Gaps = 3/61 (4%)
Query: 448 AASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTAS 507
A STP AP P A +P P A APAP + + A+
Sbjct: 192 AGSTP---ATAPAPASAQPAAQSPAATQPEPAAAPAAAKAQAPAPQQAGTQNPAKVDHAA 248
Query: 508 P 508
P
Sbjct: 249 P 249
Score = 33.7 bits (77), Expect = 0.22
Identities = 33/149 (22%), Positives = 41/149 (27%), Gaps = 30/149 (20%)
Query: 392 ASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPV-------------P 438
P P + PAP+ A P + V T V
Sbjct: 87 KEAAPAPTAGAPAPAAQAQAAPAAGQSSGVQEVTVPDIGDIEKVTVIEVLVKVGDTVSAD 146
Query: 439 SPTTPVESPAASTPVEAPAAPV---------------DTPVT--PVASAPPTPAETPGAP 481
+ES AS V APA+ V D +T S P T A
Sbjct: 147 QSLITLESDKASMEVPAPASGVVKSVKVKVGDSVPTGDLILTLSVAGSTPATAPAPASAQ 206
Query: 482 EPVPSPAAPAPVETPSVPAEPTPTASPVQ 510
SPAA P + A +P Q
Sbjct: 207 PAAQSPAATQPEPAAAPAAAKAQAPAPQQ 235
Score = 31.0 bits (70), Expect = 1.8
Identities = 20/72 (27%), Positives = 26/72 (36%), Gaps = 17/72 (23%)
Query: 426 ETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETP---GAPE 482
A ++P AP P+ P A+T E AAP A+ P A
Sbjct: 190 SVAGSTPATAPAPASAQPAAQSPAATQPEPAAAPA-----------AAKAQAPAPQQAGT 238
Query: 483 PVPS---PAAPA 491
P+ AAPA
Sbjct: 239 QNPAKVDHAAPA 250
>gnl|CDD|152960 pfam12526, DUF3729, Protein of unknown function (DUF3729). This
family of proteins is found in viruses. Proteins in this
family are typically between 145 and 1707 amino acids in
length. The family is found in association with
pfam01443, pfam01661, pfam05417, pfam01660, pfam00978.
There is a single completely conserved residue L that
may be functionally important.
Length = 115
Score = 32.7 bits (75), Expect = 0.12
Identities = 21/79 (26%), Positives = 24/79 (30%), Gaps = 9/79 (11%)
Query: 431 SPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAP 490
SP + P PV P P PV+ V PP P+P P P
Sbjct: 30 SPPESAHPDDPPPVGDPRP------PVVDTPPPVSAVWVLPPPSEPAAPPPDPEPPVPGP 83
Query: 491 APVETPSVPAEPTPTASPV 509
A P P P A
Sbjct: 84 AG---PPSPLAPPAPARKP 99
Score = 31.2 bits (71), Expect = 0.43
Identities = 22/80 (27%), Positives = 24/80 (30%), Gaps = 3/80 (3%)
Query: 380 SSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPS 439
SS + PE PV P TPP + P P A PVP
Sbjct: 26 SSCFSPPESAHPDDPPPVGDPRPPVVDTPPPVSAVWVLPPP---SEPAAPPPDPEPPVPG 82
Query: 440 PTTPVESPAASTPVEAPAAP 459
P P A P P P
Sbjct: 83 PAGPPSPLAPPAPARKPPLP 102
Score = 30.4 bits (69), Expect = 0.72
Identities = 22/81 (27%), Positives = 25/81 (30%), Gaps = 3/81 (3%)
Query: 405 PSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPV 464
S P A P + P P PV+A P + P P
Sbjct: 29 FSPPESAHPDDPPPVGDPRPPVVDTPPPVSAVWVLPPPSEPAAPPPDPEPPVPGPAG--- 85
Query: 465 TPVASAPPTPAETPGAPEPVP 485
P APP PA P P P P
Sbjct: 86 PPSPLAPPAPARKPPLPPPRP 106
Score = 28.9 bits (65), Expect = 2.5
Identities = 21/60 (35%), Positives = 23/60 (38%), Gaps = 2/60 (3%)
Query: 455 APAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQTSQP 514
PV P PV PP + P P PAAP P P VP P SP+ P
Sbjct: 38 DDPPPVGDPRPPVVDTPPPVSAVWVLP-PPSEPAAPPPDPEPPVP-GPAGPPSPLAPPAP 95
>gnl|CDD|227952 COG5665, NOT5, CCR4-NOT transcriptional regulation complex, NOT5
subunit [Transcription].
Length = 548
Score = 34.6 bits (79), Expect = 0.13
Identities = 23/124 (18%), Positives = 45/124 (36%), Gaps = 15/124 (12%)
Query: 346 WDNIWKKISQTIEPSKPPAAEPSQTTSESTEKK-ESSPPTVPEVKPAASVEPVPVSPVPA 404
+D I++ + I+PS P + ++++ SS K A V +S
Sbjct: 189 YDTIYEDMGCEIQPSSSNNEAPKEGNNQTSLSSIRSSKKQERSPKKKAPQRDVSIS---- 244
Query: 405 PSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPV 464
+ P++ E+A+ S + P P T ++ + + TP
Sbjct: 245 ----------DRATTPIAPGVESASQSISSTPTPVSTDTPLHTVKDDSIKFDNSTLGTPT 294
Query: 465 TPVA 468
T V+
Sbjct: 295 THVS 298
>gnl|CDD|235540 PRK05641, PRK05641, putative acetyl-CoA carboxylase biotin carboxyl
carrier protein subunit; Validated.
Length = 153
Score = 33.3 bits (76), Expect = 0.13
Identities = 16/46 (34%), Positives = 18/46 (39%)
Query: 442 TPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSP 487
TP APA V + TPVA A P PA V +P
Sbjct: 45 LSAVQEQVPTPAPAPAPAVPSAPTPVAPAAPAPAPASAGENVVTAP 90
Score = 32.9 bits (75), Expect = 0.19
Identities = 13/46 (28%), Positives = 16/46 (34%), Gaps = 1/46 (2%)
Query: 406 STPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAAST 451
V T PAP P +A +PVA P+P T
Sbjct: 44 DLSAVQEQVPT-PAPAPAPAVPSAPTPVAPAAPAPAPASAGENVVT 88
Score = 32.5 bits (74), Expect = 0.22
Identities = 16/57 (28%), Positives = 20/57 (35%), Gaps = 1/57 (1%)
Query: 453 VEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPV 509
VEA +D P PA P P P+P APA A +P+
Sbjct: 36 VEAKGLGIDLSAVQEQVPTPAPAPAPAVP-SAPTPVAPAAPAPAPASAGENVVTAPM 91
Score = 32.1 bits (73), Expect = 0.32
Identities = 16/51 (31%), Positives = 21/51 (41%), Gaps = 3/51 (5%)
Query: 397 VPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESP 447
+ +S V P P PA S PT A A+P AP + V +P
Sbjct: 43 IDLSAVQEQVPTPAPAPA---PAVPSAPTPVAPAAPAPAPASAGENVVTAP 90
Score = 29.8 bits (67), Expect = 1.6
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Query: 391 AASVEPVPV-SPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVP 438
+A E VP +P PAP+ P PT PA + +A + V AP+P
Sbjct: 46 SAVQEQVPTPAPAPAPAVPS--APTPVAPAAPAPAPASAGENVVTAPMP 92
Score = 29.8 bits (67), Expect = 2.0
Identities = 14/53 (26%), Positives = 19/53 (35%), Gaps = 2/53 (3%)
Query: 441 TTPVESPAASTPVEAPAAPVDTPV-TPVASAPPTPAETPGAPEPVPSPAAPAP 492
T VE+ + A V TP P + P P P P+PA+
Sbjct: 33 TYEVEAKGLGIDLSAVQEQVPTPAPAPAPAVPSAPTPVA-PAAPAPAPASAGE 84
Score = 29.8 bits (67), Expect = 2.1
Identities = 11/36 (30%), Positives = 14/36 (38%)
Query: 481 PEPVPSPAAPAPVETPSVPAEPTPTASPVQTSQPCA 516
PAP P+VP+ PTP A P +
Sbjct: 46 SAVQEQVPTPAPAPAPAVPSAPTPVAPAAPAPAPAS 81
Score = 27.9 bits (62), Expect = 7.1
Identities = 12/44 (27%), Positives = 16/44 (36%), Gaps = 4/44 (9%)
Query: 416 TTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAP 459
+ PT A +P P+P +PAA P A A
Sbjct: 45 LSAVQEQVPTPAPAPAPAVPSAPTPV----APAAPAPAPASAGE 84
Score = 27.9 bits (62), Expect = 8.5
Identities = 14/47 (29%), Positives = 17/47 (36%), Gaps = 1/47 (2%)
Query: 429 AASPVAAPVPSPTTPVESPAASTPVEAPA-APVDTPVTPVASAPPTP 474
+A P P+P P+A TPV A AP P P
Sbjct: 46 SAVQEQVPTPAPAPAPAVPSAPTPVAPAAPAPAPASAGENVVTAPMP 92
>gnl|CDD|220684 pfam10310, DUF2413, Protein of unknown function (DUF2413). This is
a family of proteins conserved in fungi. The function is
not known.
Length = 436
Score = 34.4 bits (79), Expect = 0.15
Identities = 17/115 (14%), Positives = 28/115 (24%), Gaps = 7/115 (6%)
Query: 401 PVPAPSTPPVATPTETTPAPVSTPT-----ETAAASPVAAPVPSPTTPVESPAASTPVEA 455
P T + + + S A P P P +
Sbjct: 9 PDEKAPTKKPKKGDASKDSTEDDEDILEFLDELEQSEKAKP-PKKPKEASRPGTPRNPKK 67
Query: 456 PAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQ 510
+ P ++ P P ++ P + AP EP T P+
Sbjct: 68 SSKPTESSAASSEEKPAKPRKS-AESTRSSHPKSKAPSTESEEEEEPEETPDPIA 121
Score = 31.3 bits (71), Expect = 1.2
Identities = 26/116 (22%), Positives = 42/116 (36%), Gaps = 4/116 (3%)
Query: 357 IEPSKPPAAEPSQTTSESTEKKESSPPTVPE-VKPAASVEPVPVSPVPAPSTPPVATPTE 415
E + + + +STE E + E + + P P TP
Sbjct: 10 DEKAPTKKPKKGDASKDSTEDDEDILEFLDELEQSEKAKPPKKPKEASRPGTPRNPK-KS 68
Query: 416 TTPAPVSTP-TETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASA 470
+ P S +E A P + + ++ +S A ST E P +TP P+AS
Sbjct: 69 SKPTESSAASSEEKPAKPRKSAESTRSSHPKSKAPSTESEEEEEPEETP-DPIASI 123
>gnl|CDD|215899 pfam00397, WW, WW domain. The WW domain is a protein module with
two highly conserved tryptophans that binds proline-rich
peptide motifs in vitro.
Length = 30
Score = 30.2 bits (69), Expect = 0.15
Identities = 9/17 (52%), Positives = 12/17 (70%)
Query: 273 LPPGWEQARTAEGQVYY 289
LPPGWE+ +G+ YY
Sbjct: 1 LPPGWEERTDTDGRPYY 17
>gnl|CDD|233367 TIGR01349, PDHac_trf_mito, pyruvate dehydrogenase complex
dihydrolipoamide acetyltransferase, long form. This
model represents one of several closely related clades
of the dihydrolipoamide acetyltransferase subunit of the
pyruvate dehydrogenase complex. It includes sequences
from mitochondria and from alpha and beta branches of
the proteobacteria, as well as from some other bacteria.
Sequences from Gram-positive bacteria are not included.
The non-enzymatic homolog protein X, which serves as an
E3 component binding protein, falls within the clade
phylogenetically but is rejected by its low score
[Energy metabolism, Pyruvate dehydrogenase].
Length = 436
Score = 34.0 bits (78), Expect = 0.16
Identities = 31/147 (21%), Positives = 48/147 (32%), Gaps = 18/147 (12%)
Query: 376 EKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAA 435
E+KE K +S P P AP+ PP + P P P + +
Sbjct: 76 EEKEDVADAFKNYKLESSASPAPKPSEIAPTAPP------SAPKPSPAPQKQSPEP---- 125
Query: 436 PVPSPTTPVESP---AASTPVEAPAAPVDTPVTPVASAPP----TPAETPGAPEPVPSPA 488
P+P + ES AS + A ++ VA + P + P+ A
Sbjct: 126 SSPAPLSDKESGDRIFASPLAKKLAKEKGIDLSAVAGSGPNGRIVKKDIESFVPQSPASA 185
Query: 489 -APAPVETPSVPAEPTPTASPVQTSQP 514
A TP+ P ++ P
Sbjct: 186 NQQAAATTPATYPAAAPVSTGSYEDVP 212
Score = 29.0 bits (65), Expect = 6.7
Identities = 17/67 (25%), Positives = 25/67 (37%), Gaps = 3/67 (4%)
Query: 443 PVESPAAST---PVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVP 499
PV P A + A + + AS P P+E P +PAP + P
Sbjct: 66 PVNKPIAVLVEEKEDVADAFKNYKLESSASPAPKPSEIAPTAPPSAPKPSPAPQKQSPEP 125
Query: 500 AEPTPTA 506
+ P P +
Sbjct: 126 SSPAPLS 132
>gnl|CDD|236382 PRK09111, PRK09111, DNA polymerase III subunits gamma and tau;
Validated.
Length = 598
Score = 34.1 bits (79), Expect = 0.17
Identities = 14/70 (20%), Positives = 17/70 (24%)
Query: 419 APVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETP 478
P AP AA+ P A V A+A P
Sbjct: 391 PPSPGGGGGGPPGGGGAPGAPAAAAAPGAAAAAPAAGGPAAALAAVPDAAAAAAAPPAPA 450
Query: 479 GAPEPVPSPA 488
AP+P
Sbjct: 451 AAPQPAVRLN 460
Score = 33.7 bits (78), Expect = 0.22
Identities = 11/63 (17%), Positives = 17/63 (26%)
Query: 400 SPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAP 459
P P A P + + A VP +P A PA
Sbjct: 399 GGPPGGGGAPGAPAAAAAPGAAAAAPAAGGPAAALAAVPDAAAAAAAPPAPAAAPQPAVR 458
Query: 460 VDT 462
+++
Sbjct: 459 LNS 461
Score = 32.6 bits (75), Expect = 0.51
Identities = 18/72 (25%), Positives = 22/72 (30%), Gaps = 1/72 (1%)
Query: 398 PVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPA 457
P SP PP PA + P AAA P + V AA+
Sbjct: 391 PPSPGGGGGGPPGGGGAPGAPAAAAAPGAAAAAPAAGGPAAAL-AAVPDAAAAAAAPPAP 449
Query: 458 APVDTPVTPVAS 469
A P + S
Sbjct: 450 AAAPQPAVRLNS 461
Score = 31.8 bits (73), Expect = 1.0
Identities = 14/64 (21%), Positives = 19/64 (29%), Gaps = 3/64 (4%)
Query: 434 AAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPV 493
P + AA+ A A P +A+ P A P AAP P
Sbjct: 400 GPPGGGGAPGAPAAAAAPGAAAAAPAAGGPAAALAAVPDAAAAAAAPP---APAAAPQPA 456
Query: 494 ETPS 497
+
Sbjct: 457 VRLN 460
Score = 31.4 bits (72), Expect = 1.1
Identities = 17/86 (19%), Positives = 21/86 (24%), Gaps = 11/86 (12%)
Query: 434 AAPVPSP----------TTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEP 483
AA +P+P P A +A PA A
Sbjct: 374 AADLPTPDEALRRLQEGPPSPGGGGGGPPGGGGAPGAPAAAAAPGAAAAAPAAGGPAAAL 433
Query: 484 VPSPAAPAPVET-PSVPAEPTPTASP 508
P A A P+ A P P
Sbjct: 434 AAVPDAAAAAAAPPAPAAAPQPAVRL 459
Score = 31.0 bits (71), Expect = 1.5
Identities = 14/81 (17%), Positives = 22/81 (27%), Gaps = 7/81 (8%)
Query: 415 ETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTP 474
+ P A P + AA+ A A P +A+ P
Sbjct: 388 QEGPPSPGGGGGGPPGGGGAPGAP-------AAAAAPGAAAAAPAAGGPAAALAAVPDAA 440
Query: 475 AETPGAPEPVPSPAAPAPVET 495
A P P +P + +
Sbjct: 441 AAAAAPPAPAAAPQPAVRLNS 461
Score = 28.7 bits (65), Expect = 8.9
Identities = 13/67 (19%), Positives = 18/67 (26%)
Query: 409 PVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVA 468
P + P A A+ A + PAA+ AA A
Sbjct: 391 PPSPGGGGGGPPGGGGAPGAPAAAAAPGAAAAAPAAGGPAAALAAVPDAAAAAAAPPAPA 450
Query: 469 SAPPTPA 475
+AP
Sbjct: 451 AAPQPAV 457
>gnl|CDD|132858 cd07219, Pat_PNPLA1, Patatin-like phospholipase domain containing
protein 1. Members of this family share a patatin
domain, initially discovered in potato tubers. Some
members of PNPLA1 subfamily do not have the lipase
consensus sequence Gly-X-Ser-X-Gly which is essential
for hydrolase activity. This family includes PNPLA1
from Homo sapiens and Gallus gallus. Currently, there is
no literature available on the physiological role,
structure, or enzymatic activity of PNPLA1. It is
expressed in various human tissues in low mRNA levels.
Length = 382
Score = 34.1 bits (78), Expect = 0.17
Identities = 15/56 (26%), Positives = 23/56 (41%)
Query: 443 PVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSV 498
P SP + P V++PV+ AS + PG+ + + PA PS
Sbjct: 322 PPLSPPLAAPESTAEWVVESPVSSPASPLESSPSLPGSLTDLSPASLPAVHSLPSS 377
Score = 34.1 bits (78), Expect = 0.19
Identities = 19/58 (32%), Positives = 24/58 (41%), Gaps = 2/58 (3%)
Query: 358 EPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPV--PAPSTPPVATP 413
P PP A P T E SSP + E P+ +SP PA + P +TP
Sbjct: 322 PPLSPPLAAPESTAEWVVESPVSSPASPLESSPSLPGSLTDLSPASLPAVHSLPSSTP 379
Score = 32.2 bits (73), Expect = 0.73
Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 1/60 (1%)
Query: 362 PPAAEPSQTTSESTEKKESSPPTVPEVKPAAS-VEPVPVSPVPAPSTPPVATPTETTPAP 420
PP + P + E SP + P +S P ++ + S P V + +TP
Sbjct: 322 PPLSPPLAAPESTAEWVVESPVSSPASPLESSPSLPGSLTDLSPASLPAVHSLPSSTPGL 381
Score = 30.2 bits (68), Expect = 2.3
Identities = 19/91 (20%), Positives = 34/91 (37%), Gaps = 2/91 (2%)
Query: 362 PPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPV 421
P ++PS +++ ++ P K P P+ P P +T +PV
Sbjct: 286 PQRSQPSLQDGQASLEESWQPHLARAPKGDGRGLHDP--PLSPPLAAPESTAEWVVESPV 343
Query: 422 STPTETAAASPVAAPVPSPTTPVESPAASTP 452
S+P +SP + +P PA +
Sbjct: 344 SSPASPLESSPSLPGSLTDLSPASLPAVHSL 374
>gnl|CDD|172376 PRK13855, PRK13855, type IV secretion system protein VirB10;
Provisional.
Length = 376
Score = 34.1 bits (78), Expect = 0.19
Identities = 14/54 (25%), Positives = 21/54 (38%)
Query: 456 PAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPV 509
P+ + T P AP P A + P AP ++ EP P +P+
Sbjct: 62 PSTMIATNTKPFHPAPIDVPPDPPAAQEAVQPTAPPSAQSEPERNEPRPEETPI 115
Score = 30.6 bits (69), Expect = 2.1
Identities = 18/63 (28%), Positives = 24/63 (38%), Gaps = 1/63 (1%)
Query: 376 EKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAA 435
KKE+ P P A + +P +P+ P PP A AP S +E P
Sbjct: 53 SKKENEPAP-PSTMIATNTKPFHPAPIDVPPDPPAAQEAVQPTAPPSAQSEPERNEPRPE 111
Query: 436 PVP 438
P
Sbjct: 112 ETP 114
Score = 29.1 bits (65), Expect = 6.3
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 7/63 (11%)
Query: 403 PAPSTPPVATPTET-TPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVD 461
PAP + +AT T+ PAP+ P + AA P +P + P + P P +
Sbjct: 59 PAPPSTMIATNTKPFHPAPIDVPPDPPAAQEAVQP-TAPPSAQSEPERNEP-----RPEE 112
Query: 462 TPV 464
TP+
Sbjct: 113 TPI 115
>gnl|CDD|225629 COG3087, FtsN, Cell division protein [Cell division and chromosome
partitioning].
Length = 264
Score = 33.7 bits (77), Expect = 0.21
Identities = 23/131 (17%), Positives = 31/131 (23%), Gaps = 12/131 (9%)
Query: 358 EPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASV---------EPVPVSPVPAPSTP 408
E A + + ++ + P + P P
Sbjct: 62 EVWSYIKALEDRQIGVPQPTEPAAVKDAERLTPEQRQLLEQMEVDQKAQPTQLGEQPEQA 121
Query: 409 PVATPTETTPAPVSTPTETAAASPV-AAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPV 467
+ T + T PV P P PV A PVE AP P
Sbjct: 122 RIEEQPRTQSQKAQSQATTVQTQPVKPKPRPEKPQPVAPAPAPEPVEK--APKAEAAPPP 179
Query: 468 ASAPPTPAETP 478
AET
Sbjct: 180 KPKAEDAAETR 190
Score = 32.1 bits (73), Expect = 0.58
Identities = 26/121 (21%), Positives = 31/121 (25%), Gaps = 12/121 (9%)
Query: 398 PVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAP------VPSPTTPVESPAAST 451
S + A + P T PA V PT E P +
Sbjct: 63 VWSYIKALEDRQIGVPQPTEPAAVKDAERLTPEQRQLLEQMEVDQKAQPTQLGEQPEQAR 122
Query: 452 PVEAPA--APVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPV 509
E P + P P P P APAP P V P A+P
Sbjct: 123 IEEQPRTQSQKAQSQATTVQTQPV---KPKPRPEKPQPVAPAPAPEP-VEKAPKAEAAPP 178
Query: 510 Q 510
Sbjct: 179 P 179
Score = 31.3 bits (71), Expect = 1.0
Identities = 24/118 (20%), Positives = 27/118 (22%), Gaps = 20/118 (16%)
Query: 398 PVSPVPAPSTPP-VATPTETTPA-------------PVSTPTETAAASPVAAPVPSPTTP 443
VP P+ P V TP T P +
Sbjct: 73 RQIGVPQPTEPAAVKDAERLTPEQRQLLEQMEVDQKAQPTQLGEQPEQARIEEQPRTQSQ 132
Query: 444 VESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAE 501
A+T P P P P P APEPV P AE
Sbjct: 133 KAQSQATTVQTQPVKPKPRP------EKPQPVAPAPAPEPVEKAPKAEAAPPPKPKAE 184
>gnl|CDD|236782 PRK10871, nlpD, lipoprotein NlpD; Provisional.
Length = 319
Score = 33.7 bits (77), Expect = 0.21
Identities = 21/89 (23%), Positives = 28/89 (31%), Gaps = 5/89 (5%)
Query: 374 STEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPV 433
+ E P +V P S + P + P T +PV
Sbjct: 121 QADAAEQGVVIKPAQNSTVAVASQPTITYSESS----GEQSANKMLPNNKPAATTVTAPV 176
Query: 434 AAPVPSPTTPVESPAA-STPVEAPAAPVD 461
AP S T P S + STP+ P D
Sbjct: 177 TAPTASTTEPTASSTSTSTPISTWRWPTD 205
Score = 32.5 bits (74), Expect = 0.50
Identities = 25/66 (37%), Positives = 40/66 (60%), Gaps = 5/66 (7%)
Query: 364 AAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVST 423
A++P+ T SES+ ++S+ +P KPAA+ PV+ A +T P A+ T T+ P+ST
Sbjct: 142 ASQPTITYSESS-GEQSANKMLPNNKPAATTVTAPVTAPTASTTEPTASSTSTS-TPIST 199
Query: 424 ---PTE 426
PT+
Sbjct: 200 WRWPTD 205
>gnl|CDD|226455 COG3946, VirJ, Type IV secretory pathway, VirJ component
[Intracellular trafficking and secretion].
Length = 456
Score = 34.0 bits (78), Expect = 0.22
Identities = 27/110 (24%), Positives = 36/110 (32%), Gaps = 10/110 (9%)
Query: 399 VSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAA 458
VS P P V TP A + A +P+P + +P + V A
Sbjct: 151 VSLDPTPG--VVLTPACCEKAEADKDQDGTLTPSADAALPAPAPLISTPGSPQNVALEAR 208
Query: 459 PVDTPVTPVASAPPTPAETPG------APEPVPSPAAPAPVETPSVPAEP 502
+ V A AP A A P PA + VPA+P
Sbjct: 209 DRNAAV--AALAPDLSATEIAKLAVQRAVPIPPPPAGVEALPVVEVPAKP 256
Score = 29.0 bits (65), Expect = 6.9
Identities = 22/100 (22%), Positives = 31/100 (31%), Gaps = 14/100 (14%)
Query: 419 APVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPA-ET 477
+P +T + P V +P ++ A TP A P P T
Sbjct: 142 SPDATLAGAVSLDPTPGVVLTPACCEKAEADKDQDGTL-----TPSADAALPAPAPLIST 196
Query: 478 PGAPEPVPSPA----APAPVETPSVPAEPTPTASPVQTSQ 513
PG+P+ V A A P + A T Q
Sbjct: 197 PGSPQNVALEARDRNAAVAALAPDLSA----TEIAKLAVQ 232
>gnl|CDD|235777 PRK06302, PRK06302, acetyl-CoA carboxylase biotin carboxyl carrier
protein subunit; Validated.
Length = 155
Score = 32.5 bits (75), Expect = 0.23
Identities = 18/58 (31%), Positives = 21/58 (36%), Gaps = 12/58 (20%)
Query: 447 PAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVP------SP------AAPAP 492
P A +A AAPV A+A PA P A SP AP+P
Sbjct: 39 PVAPVAQQAAAAPVAAAPAAAAAAAAAPAAAPAAAAAEAEGHVVTSPMVGTFYRAPSP 96
Score = 31.7 bits (73), Expect = 0.39
Identities = 13/48 (27%), Positives = 16/48 (33%), Gaps = 6/48 (12%)
Query: 416 TTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTP 463
+ AAA AAP + AA+ P APAA
Sbjct: 36 AAAPVAPVAQQAAAAPVAAAPAAAA------AAAAAPAAAPAAAAAEA 77
Score = 31.7 bits (73), Expect = 0.47
Identities = 14/47 (29%), Positives = 18/47 (38%)
Query: 401 PVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESP 447
PV + A P PA + AA+P AA + V SP
Sbjct: 39 PVAPVAQQAAAAPVAAAPAAAAAAAAAPAAAPAAAAAEAEGHVVTSP 85
Score = 31.3 bits (72), Expect = 0.64
Identities = 10/43 (23%), Positives = 14/43 (32%)
Query: 417 TPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAP 459
A P AA+ A P+ + A+ P A A
Sbjct: 35 AAAAPVAPVAQQAAAAPVAAAPAAAAAAAAAPAAAPAAAAAEA 77
Score = 30.2 bits (69), Expect = 1.5
Identities = 9/43 (20%), Positives = 12/43 (27%)
Query: 470 APPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQTS 512
A A P AAPA + P A+ +
Sbjct: 36 AAAPVAPVAQQAAAAPVAAAPAAAAAAAAAPAAAPAAAAAEAE 78
Score = 29.8 bits (68), Expect = 1.8
Identities = 15/64 (23%), Positives = 18/64 (28%), Gaps = 3/64 (4%)
Query: 383 PTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASP---VAAPVPS 439
P A PV+ PA + A P A + SP PS
Sbjct: 36 AAAPVAPVAQQAAAAPVAAAPAAAAAAAAAPAAAPAAAAAEAEGHVVTSPMVGTFYRAPS 95
Query: 440 PTTP 443
P P
Sbjct: 96 PDAP 99
Score = 29.8 bits (68), Expect = 1.9
Identities = 14/53 (26%), Positives = 19/53 (35%), Gaps = 2/53 (3%)
Query: 404 APSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAP 456
A + P + APV AAA+ AAP +P V +P
Sbjct: 35 AAAAPVAPVAQQAAAAPV-AAAPAAAAAAAAAPAAAPAAAAAEAEGHV-VTSP 85
Score = 29.0 bits (66), Expect = 3.4
Identities = 16/65 (24%), Positives = 22/65 (33%), Gaps = 9/65 (13%)
Query: 381 SPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAP------VSTP---TETAAAS 431
+ V V A+ PV +P A + A V++P T A S
Sbjct: 36 AAAPVAPVAQQAAAAPVAAAPAAAAAAAAAPAAAPAAAAAEAEGHVVTSPMVGTFYRAPS 95
Query: 432 PVAAP 436
P A P
Sbjct: 96 PDAPP 100
Score = 28.6 bits (65), Expect = 4.3
Identities = 13/44 (29%), Positives = 15/44 (34%), Gaps = 1/44 (2%)
Query: 455 APAAPVDTPVTPVASAPPTPAETPGAPE-PVPSPAAPAPVETPS 497
A AAPV A+AP A A P+ A A
Sbjct: 35 AAAAPVAPVAQQAAAAPVAAAPAAAAAAAAAPAAAPAAAAAEAE 78
Score = 28.2 bits (64), Expect = 5.6
Identities = 10/42 (23%), Positives = 15/42 (35%), Gaps = 2/42 (4%)
Query: 472 PTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQTSQ 513
P A + +P A AP + A P A+P +
Sbjct: 36 AAAPVAPVAQQAAAAPVAAAPA--AAAAAAAAPAAAPAAAAA 75
Score = 27.8 bits (63), Expect = 7.5
Identities = 13/41 (31%), Positives = 15/41 (36%), Gaps = 1/41 (2%)
Query: 462 TPVTPVASAPPTPAETPGAPEPVPSPAA-PAPVETPSVPAE 501
PVA A P A P + AA AP P+ A
Sbjct: 35 AAAAPVAPVAQQAAAAPVAAAPAAAAAAAAAPAAAPAAAAA 75
>gnl|CDD|225603 COG3061, OapA, Cell envelope opacity-associated protein A [Cell
envelope biogenesis, outer membrane].
Length = 242
Score = 33.4 bits (76), Expect = 0.24
Identities = 35/159 (22%), Positives = 48/159 (30%), Gaps = 18/159 (11%)
Query: 359 PSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTP 418
P++ A + + E+ P P A V P P + V P PP+
Sbjct: 12 PAQNQMAVEQMIEEQDAPQAETMPGNFEAKPPLAEVWPAPDNNVFMPPLPPMHRRGIIVA 71
Query: 419 A---PVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPA 475
+A PV V +P EAP + TPA
Sbjct: 72 PIMLVAQAHLPSAMEKPVLPVVTREGVVDLTPKVLEKTEAPLKAQEV----------TPA 121
Query: 476 ETPGAPEPVPSPAAPAPV-ETPSVPAEPTPTASPVQTSQ 513
+TP P PV P P+ T A P + S
Sbjct: 122 KTPDQPAPV----EPEPIQAKQEKKVPRTVDAQPFKPSS 156
>gnl|CDD|237592 PRK14040, PRK14040, oxaloacetate decarboxylase; Provisional.
Length = 593
Score = 33.8 bits (78), Expect = 0.25
Identities = 22/81 (27%), Positives = 30/81 (37%), Gaps = 14/81 (17%)
Query: 390 PAASVEPVPVSPVPAPSTPPVATPTET------------TPAPVSTPTETAAASPVAAPV 437
PAA EPVP + P+ +ET + ++ A+P AAP
Sbjct: 454 PAA-FEPVPQAEAAQPAAKAEPAGSETYTVEVEGKAYVVKVSEGGDISQITPAAPAAAPA 512
Query: 438 PSPTTPVESPAASTPVEAPAA 458
+ AA PV AP A
Sbjct: 513 A-AAAAAPAAAAGEPVTAPLA 532
Score = 31.4 bits (72), Expect = 1.1
Identities = 17/76 (22%), Positives = 19/76 (25%), Gaps = 26/76 (34%)
Query: 438 PSPTTPVESPAASTPVEAPA------------------------APVDTPVTPVASAPPT 473
P P PAA P P A+A
Sbjct: 459 PVPQAEAAQPAAKAEPAGSETYTVEVEGKAYVVKVSEGGDISQITPAAPAAAPAAAAAAA 518
Query: 474 PAETPGAPEPVPSPAA 489
PA G EPV +P A
Sbjct: 519 PAAAAG--EPVTAPLA 532
>gnl|CDD|237866 PRK14952, PRK14952, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 584
Score = 33.7 bits (77), Expect = 0.25
Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Query: 463 PVTPVASAP-PTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQT 511
P + +AP PA + APEP PA PA P A+ V++
Sbjct: 388 PANLLHNAPQAAPAPSAAAPEPKHQPAPEPRPVLAPTPASGEPNAAAVRS 437
Score = 32.2 bits (73), Expect = 0.82
Identities = 33/157 (21%), Positives = 47/157 (29%), Gaps = 38/157 (24%)
Query: 392 ASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAAS-PVAAPVPSPTTPV----ES 446
A++ PAPS + P P T A+ P AA V S + V
Sbjct: 389 ANLLHNAPQAAPAPSAAAPEPKHQPAPEPRPVLAPTPASGEPNAAAVRSMWSTVRDKVRQ 448
Query: 447 PAASTPVEAPAAPV-----DTPVTPVASAPPTPAET------------------------ 477
+ +T V A V +T V SAP +
Sbjct: 449 RSRTTEVMLAGATVRALEGNTLVLTHESAPLARRLSEQRNADVLAEALKDALGVNWRVRC 508
Query: 478 -PGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQTSQ 513
G P A+PA + PA+P ++Q
Sbjct: 509 ETGKPAA---AASPAGGGANAPPAKPVKPPPSCLSAQ 542
Score = 31.8 bits (72), Expect = 1.0
Identities = 18/75 (24%), Positives = 24/75 (32%), Gaps = 7/75 (9%)
Query: 409 PVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVA 468
P A+ E+ ET + +P+ AA P A P P
Sbjct: 363 PSASDAESALLQRVERIETR----LDMSIPANLLHNAPQAAPAPSAAAPEP---KHQPAP 415
Query: 469 SAPPTPAETPGAPEP 483
P A TP + EP
Sbjct: 416 EPRPVLAPTPASGEP 430
Score = 30.2 bits (68), Expect = 3.0
Identities = 12/44 (27%), Positives = 14/44 (31%), Gaps = 1/44 (2%)
Query: 447 PAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAP 490
PA AAP + P P P P P P+ P
Sbjct: 388 PANLLHNAPQAAPAPSAAAPEPKHQPAPEPRP-VLAPTPASGEP 430
Score = 29.5 bits (66), Expect = 5.7
Identities = 14/49 (28%), Positives = 16/49 (32%), Gaps = 6/49 (12%)
Query: 469 SAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQTSQPCAS 517
S P P PS AAP P +P P PV P +
Sbjct: 386 SIPANLLHNAPQAAPAPSAAAPEP------KHQPAPEPRPVLAPTPASG 428
Score = 29.5 bits (66), Expect = 5.8
Identities = 12/43 (27%), Positives = 14/43 (32%)
Query: 401 PVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTP 443
P P A P + AP PV AP P+ P
Sbjct: 388 PANLLHNAPQAAPAPSAAAPEPKHQPAPEPRPVLAPTPASGEP 430
>gnl|CDD|215187 PLN02328, PLN02328, lysine-specific histone demethylase 1 homolog.
Length = 808
Score = 33.8 bits (77), Expect = 0.25
Identities = 20/94 (21%), Positives = 34/94 (36%), Gaps = 4/94 (4%)
Query: 343 KDSWDNIWKKISQTIEPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPV 402
+D DN+ +S+ P + PSQ+ ++SP T P ++P P+ P
Sbjct: 9 EDPADNVNDVVSEASSPETDLSLSPSQSEQNIENDGQNSPET---QSPLTELQPSPLPP- 64
Query: 403 PAPSTPPVATPTETTPAPVSTPTETAAASPVAAP 436
PV+ + P + P P
Sbjct: 65 NTTLDAPVSDSQGDESSSEQQPQNPNSTEPAPPP 98
Score = 30.7 bits (69), Expect = 2.0
Identities = 24/116 (20%), Positives = 43/116 (37%), Gaps = 19/116 (16%)
Query: 372 SESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAAS 431
T++ E V +V AS +S P+ S + + +P S TE +
Sbjct: 2 ETETKEPEDPADNVNDVVSEASSPETDLSLSPSQSEQNIENDGQNSPETQSPLTELQPS- 60
Query: 432 PVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSP 487
P+P P T +++P + + + S+ + P + EP P P
Sbjct: 61 ----PLP-PNTTLDAPVSDSQGDE-------------SSSEQQPQNPNSTEPAPPP 98
>gnl|CDD|234730 PRK00339, minC, septum formation inhibitor; Reviewed.
Length = 249
Score = 33.2 bits (76), Expect = 0.26
Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 6/58 (10%)
Query: 455 APAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQTS 512
A A D PV P + A P EP P+ A P P + P P EP + V T+
Sbjct: 97 AAAIAADLPVLPPSGARERPL------EPSPAEAEPEPAKAPEKPPEPAVRPTRVITT 148
>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3. This
protein, which interacts with both microtubules and
TRAF3 (tumour necrosis factor receptor-associated factor
3), is conserved from worms to humans. The N-terminal
region is the microtubule binding domain and is
well-conserved; the C-terminal 100 residues, also
well-conserved, constitute the coiled-coil region which
binds to TRAF3. The central region of the protein is
rich in lysine and glutamic acid and carries KKE motifs
which may also be necessary for tubulin-binding, but
this region is the least well-conserved.
Length = 506
Score = 33.3 bits (76), Expect = 0.29
Identities = 22/150 (14%), Positives = 33/150 (22%), Gaps = 8/150 (5%)
Query: 343 KDSWDNIWKKISQTIEPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPV 402
K S D K++ + +P++ + K+E +VK E
Sbjct: 70 KLSSDEAVKRVEKGGSKGPAAKTKPAKEPKNESGKEE--EKEKEQVK-----EEKKKKKE 122
Query: 403 PAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDT 462
P P E P E P + P P
Sbjct: 123 KPKEEPKDRKPKEEAKEK-RPPKEKEKEKEKKVEEPRDREEEKKRERVRAKSRPKKPPKK 181
Query: 463 PVTPVASAPPTPAETPGAPEPVPSPAAPAP 492
PP + A P
Sbjct: 182 KPPNKKKEPPEEEKQRQAAREAVKGKPEEP 211
Score = 29.5 bits (66), Expect = 5.7
Identities = 17/118 (14%), Positives = 28/118 (23%), Gaps = 9/118 (7%)
Query: 351 KKISQTIEPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPV 410
KK + P + Q E+ + K P E + +
Sbjct: 180 KKKPPNKKKEPPEEEKQRQAAREAVKGKPEEPDVNEEREKEEDDGKDRETTTSPMEEDES 239
Query: 411 A---------TPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAP 459
+ + P P + P T + P+A PA P
Sbjct: 240 RQSSEISRRSSSSLKKPDPSPSMASPETRESSKRTETRPRTSLRPPSARPASARPAPP 297
>gnl|CDD|234797 PRK00575, tatA, twin arginine translocase protein A; Provisional.
Length = 92
Score = 31.2 bits (71), Expect = 0.29
Identities = 12/44 (27%), Positives = 16/44 (36%)
Query: 445 ESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPA 488
++ A ++ A A TPV S PA G PA
Sbjct: 49 DNKAEASAAAAQAPYQVATPTPVQSQRVDPAAASGQDSTEARPA 92
>gnl|CDD|165563 PHA03308, PHA03308, transcriptional regulator ICP4; Provisional.
Length = 1463
Score = 33.6 bits (76), Expect = 0.30
Identities = 38/138 (27%), Positives = 46/138 (33%), Gaps = 15/138 (10%)
Query: 372 SESTEKKESSPPTVPEVKPAASVEPVPVSPV-PAPSTPPVATPTETTPAPVSTPTETAAA 430
+E + +ES P P EP+ VSP P P PP ET +E A
Sbjct: 749 AEPSAAQESPANPWPRAPPCDEQEPLSVSPYGPEPDRPP-DDDFETRKGLKRKSSEDHAD 807
Query: 431 SPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAP 490
T ++ S P P D P+ PP P G P P
Sbjct: 808 PIPEGNATKKTCGLQGLPDSLPPAVPETDRDNPLL-----PPCPITPEGPPCP------- 855
Query: 491 APVETPSVPAEPTPTASP 508
P E P P EP SP
Sbjct: 856 -PREEPQQPQEPQEPQSP 872
>gnl|CDD|225987 COG3456, COG3456, Predicted component of the type VI protein
secretion system, contains a FHA domain [Intracellular
trafficking, secretion, and vesicular transport;
Signal transduction mechanisms].
Length = 430
Score = 33.2 bits (76), Expect = 0.30
Identities = 28/108 (25%), Positives = 36/108 (33%), Gaps = 12/108 (11%)
Query: 392 ASVEPVPVSPVPAPSTP-----PVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVES 446
A +EP P P P + P PV P A A PS + E+
Sbjct: 134 ADIEPEPRLP-PGLTDPLQLADPVPNGFSADPLSALQSESLIAQPDPAGGAPSISRNSEA 192
Query: 447 PAASTPVEAP---AAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPA 491
P + P D V P+A++PP P E P S A
Sbjct: 193 PLSDPASAGGIDTPFPDDLDVPPIAASPPGPQE---GPTISASQPAQR 237
Score = 31.7 bits (72), Expect = 1.1
Identities = 26/133 (19%), Positives = 39/133 (29%), Gaps = 15/133 (11%)
Query: 391 AASVEPVPVSPVPAPST--PPVATPTETTPAPVSTPTET---AAASPVAAPVPSPTTPVE 445
+P SP A S+ + P P P T A PV +
Sbjct: 109 PDESDPDTGSPQSAVSSTDMDDDFLADIEPEPRLPPGLTDPLQLADPVPNGFSADPLSAL 168
Query: 446 SPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEP--- 502
+ PA + P P + + +P P ++ P + A P
Sbjct: 169 QSESLIAQPDPAGGAPSISRNS----EAPLSDPASAGGIDTPF-PDDLDVPPIAASPPGP 223
Query: 503 --TPTASPVQTSQ 513
PT S Q +Q
Sbjct: 224 QEGPTISASQPAQ 236
Score = 29.4 bits (66), Expect = 4.5
Identities = 16/123 (13%), Positives = 28/123 (22%), Gaps = 7/123 (5%)
Query: 400 SPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAP 459
P T + +T A P P T P++ +
Sbjct: 109 PDESDPDTGSPQSAVSSTDMDDDFL---ADIEPEPRLPPGLTDPLQLADPVPNGFSADPL 165
Query: 460 VDTPVTPVASAPPTPAETPGAPEPVPS----PAAPAPVETPSVPAEPTPTASPVQTSQPC 515
+ + P P + PA+ ++TP P +
Sbjct: 166 SALQSESLIAQPDPAGGAPSISRNSEAPLSDPASAGGIDTPFPDDLDVPPIAASPPGPQE 225
Query: 516 AST 518
T
Sbjct: 226 GPT 228
>gnl|CDD|234994 PRK01973, PRK01973, septum formation inhibitor; Reviewed.
Length = 271
Score = 33.2 bits (76), Expect = 0.30
Identities = 14/56 (25%), Positives = 18/56 (32%)
Query: 418 PAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPT 473
E AAA+ AA + + AA AP P VA+ T
Sbjct: 108 APAAKAADEAAAAAAEAAAPAAAAAAEAAAAAPAAAAAPEPPPAPAPEAVAAQSQT 163
Score = 30.5 bits (69), Expect = 2.0
Identities = 15/72 (20%), Positives = 21/72 (29%), Gaps = 1/72 (1%)
Query: 379 ESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVP 438
E+ P K A + A PA + P A +P A
Sbjct: 102 EARDRRAPAAKAADEAAAAAAEAAAPAAAAA-AEAAAAAPAAAAAPEPPPAPAPEAVAAQ 160
Query: 439 SPTTPVESPAAS 450
S T ++ P S
Sbjct: 161 SQTLVIDRPLRS 172
Score = 30.1 bits (68), Expect = 2.9
Identities = 16/54 (29%), Positives = 19/54 (35%)
Query: 438 PSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPA 491
P+ E+ AA+ APAA A A E P AP P A
Sbjct: 109 PAAKAADEAAAAAAEAAAPAAAAAAEAAAAAPAAAAAPEPPPAPAPEAVAAQSQ 162
Score = 29.7 bits (67), Expect = 3.1
Identities = 15/57 (26%), Positives = 21/57 (36%), Gaps = 2/57 (3%)
Query: 419 APVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPA 475
AP + + AAA+ A P+ E+ AA A AAP P +
Sbjct: 108 APAAKAADEAAAAAAEAAAPAAAAAAEAAAA--APAAAAAPEPPPAPAPEAVAAQSQ 162
Score = 29.3 bits (66), Expect = 4.5
Identities = 15/57 (26%), Positives = 19/57 (33%), Gaps = 5/57 (8%)
Query: 455 APAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQT 511
A A + +A P A + AAPA P P P P A Q+
Sbjct: 110 AAKAADEAAAAAAEAAAPAAAA-----AAEAAAAAPAAAAAPEPPPAPAPEAVAAQS 161
Score = 28.9 bits (65), Expect = 6.0
Identities = 12/55 (21%), Positives = 14/55 (25%)
Query: 446 SPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPA 500
A + A AA A+A A A P P PA
Sbjct: 109 PAAKAADEAAAAAAEAAAPAAAAAAEAAAAAPAAAAAPEPPPAPAPEAVAAQSQT 163
>gnl|CDD|218658 pfam05616, Neisseria_TspB, Neisseria meningitidis TspB protein.
This family consists of several Neisseria meningitidis
TspB virulence factor proteins.
Length = 502
Score = 33.4 bits (76), Expect = 0.31
Identities = 24/70 (34%), Positives = 25/70 (35%), Gaps = 12/70 (17%)
Query: 460 VDTPVTPVASAPPTPAETPGA-PEPVPSPAA-----PAPVETPSVPAEPTPT------AS 507
VD V P P AE P A P P SPA P P E P P P A+
Sbjct: 309 VDVQVIPRPDLTPGSAEAPEAQPLPEVSPAENPANNPNPRENPGTRPNPEPDPDLNPDAN 368
Query: 508 PVQTSQPCAS 517
P QP
Sbjct: 369 PDTDGQPGTR 378
Score = 31.9 bits (72), Expect = 0.82
Identities = 36/132 (27%), Positives = 50/132 (37%), Gaps = 16/132 (12%)
Query: 375 TEKKESSPPTVPEVKPAASVEPVPVSPVPA---PSTPPVATPTETTPAPVSTPTETAAAS 431
+EK E +P T + P PV V S + P P TP +A +
Sbjct: 269 SEKVEVAPGTKVNMGPVTDRNGNPVQVVATFGRDSQGNTTVDVQVIPRPDLTPG--SAEA 326
Query: 432 PVAAPVPSPTTPVESPAAS-TPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAP 490
P A P+P +P E+PA + P E P P + P P P A
Sbjct: 327 PEAQPLPEV-SPAENPANNPNPRENPG---TRP-----NPEPDPDLNPDANPDTDGQPGT 377
Query: 491 APVETPSVPAEP 502
P ++P+VP P
Sbjct: 378 RP-DSPAVPDRP 388
>gnl|CDD|171499 PRK12438, PRK12438, hypothetical protein; Provisional.
Length = 991
Score = 33.7 bits (77), Expect = 0.32
Identities = 12/50 (24%), Positives = 17/50 (34%)
Query: 384 TVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPV 433
T P A++ P P P + PP T P AA + +
Sbjct: 904 TAPGGDAASAPPPGAGPPAPPQAVPPPRTTQPPAAPPRGPDVPPAAVAEL 953
Score = 31.8 bits (72), Expect = 1.0
Identities = 16/76 (21%), Positives = 22/76 (28%), Gaps = 7/76 (9%)
Query: 399 VSPVPAPSTPPVATPTETTPAPVSTPTETAAASPV----AAPVPSPTTPVESPAASTPVE 454
+ V P T VAT A + A P P + P P
Sbjct: 891 LDQVFGPGTGRVATAPGGDAA---SAPPPGAGPPAPPQAVPPPRTTQPPAAPPRGPDVPP 947
Query: 455 APAAPVDTPVTPVASA 470
A A + + + SA
Sbjct: 948 AAVAELRETLADLRSA 963
Score = 31.8 bits (72), Expect = 1.1
Identities = 15/75 (20%), Positives = 17/75 (22%), Gaps = 4/75 (5%)
Query: 438 PSPTTPVESPAASTPVEAPAAPVDTPVTPVASA----PPTPAETPGAPEPVPSPAAPAPV 493
P V A T EA VA+A + P P P
Sbjct: 873 PRTEGGVRVGYAPTLAEALDQVFGPGTGRVATAPGGDAASAPPPGAGPPAPPQAVPPPRT 932
Query: 494 ETPSVPAEPTPTASP 508
P P P
Sbjct: 933 TQPPAAPPRGPDVPP 947
>gnl|CDD|233787 TIGR02223, ftsN, cell division protein FtsN. FtsN is a poorly
conserved protein active in cell division in a number of
Proteobacteria. The N-terminal 30 residue region tends
to by Lys/Arg-rich, and is followed by a
membrane-spanning region. This is followed by an acidic
low-complexity region of variable length and a
well-conserved C-terminal domain of two tandem regions
matched by pfam05036 (Sporulation related repeat), found
in several cell division and sporulation proteins. The
role of FtsN as a suppressor for other cell division
mutations is poorly understood; it may involve cell wall
hydrolysis [Cellular processes, Cell division].
Length = 298
Score = 33.1 bits (75), Expect = 0.34
Identities = 25/169 (14%), Positives = 47/169 (27%), Gaps = 10/169 (5%)
Query: 359 PSKPPAAEPSQTTSESTEKKESSPPTVPE----VKPAASVEPVPVSPVPAPSTPPVATPT 414
+ P + +E+ E PP E ++ + E + P + V
Sbjct: 53 QANEPETLQPKNQTENGETAADLPPKPEERWSYIEELEAREVLINDPEEPSNGGGVEESA 112
Query: 415 ETTPAPVSTPTETAA--ASPVAAPVPSPTTPVESPAASTPVEA----PAAPVDTPVTPVA 468
+ T + A + +P+ + A A + TPV
Sbjct: 113 QLTAEQRQLLEQMQADMRAAEKVLATAPSEQTVAVEARKQTAEKKPQKARTAEAQKTPVE 172
Query: 469 SAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQTSQPCAS 517
+ + P A ++ S P E P A ++P
Sbjct: 173 TEKIASKVKEAKQKQKALPKQTAETQSNSKPIETAPKADKADKTKPKPK 221
>gnl|CDD|215641 PLN03237, PLN03237, DNA topoisomerase 2; Provisional.
Length = 1465
Score = 33.3 bits (76), Expect = 0.34
Identities = 25/165 (15%), Positives = 46/165 (27%), Gaps = 24/165 (14%)
Query: 358 EPSKPPAAEPSQTTSESTEKKESSPPTVPEVK-----------PAASV-EPVPVSPVPAP 405
E KP ++ + + K++ + ++K PA S V VPA
Sbjct: 1236 EVVKPKGRAGAKKKAPAAAKEKEEEDEILDLKDRLAAYNLDSAPAQSAKMEETVKAVPAR 1295
Query: 406 STPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVT 465
P + + + + + A+ +A P
Sbjct: 1296 RAAARKKPLASVSVISDSDDDDDDFAVEVSLAERLKKKGGRKPAAANKKAAKPPAAAKKR 1355
Query: 466 PVASAPPT---------PAETPGAP---EPVPSPAAPAPVETPSV 498
A+ PAE G + A+P ++ SV
Sbjct: 1356 GPATVQSGQKLLTEMLKPAEAIGISPEKKVRKMRASPFNKKSGSV 1400
>gnl|CDD|215412 PLN02769, PLN02769, Probable galacturonosyltransferase.
Length = 629
Score = 33.1 bits (76), Expect = 0.34
Identities = 19/94 (20%), Positives = 35/94 (37%), Gaps = 1/94 (1%)
Query: 324 YEDHIHRQHWEEGHIDYLGKDSWDNIWKKISQTIEPSKPPAAEPSQTTSESTEKKESSPP 383
+ Q ++G + K +Q E E T+S+ ++ SS
Sbjct: 48 STGRVAVQPVSSPEFSHVGSARENGTKKTQNQVSEGVDEILKESGLTSSKPSDIVISSRS 107
Query: 384 TVPEVKPAASVEPVPVSPVPAPSTPPVATPTETT 417
+ +V P + P+PV P + P T ++T
Sbjct: 108 KLKKVFPDPKLNPLPVKP-HSVPVPSSDTKNKST 140
>gnl|CDD|223582 COG0508, AceF, Pyruvate/2-oxoglutarate dehydrogenase complex,
dihydrolipoamide acyltransferase (E2) component, and
related enzymes [Energy production and conversion].
Length = 404
Score = 33.1 bits (76), Expect = 0.34
Identities = 23/99 (23%), Positives = 32/99 (32%), Gaps = 12/99 (12%)
Query: 410 VATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAP--VDTP---- 463
+ PA P E AAA+P +AP + + AS V A +D
Sbjct: 76 IEEEGADAPAAAEAPPEPAAAAPASAPATAASAAAGRVLASPAVRRLAREAGIDLSKVKG 135
Query: 464 ------VTPVASAPPTPAETPGAPEPVPSPAAPAPVETP 496
+T + A P P+ AAPA
Sbjct: 136 TGPGGRITKKDVEAAVAEKAAAAAAPAPAAAAPASAAGE 174
Score = 32.4 bits (74), Expect = 0.63
Identities = 19/76 (25%), Positives = 25/76 (32%), Gaps = 17/76 (22%)
Query: 441 TTPVESPAAST------------PVEAPAAPVDT-----PVTPVASAPPTPAETPGAPEP 483
T V +P A PV A A ++ P A P A AP
Sbjct: 45 TMEVPAPDAGVLAKILVEEGDTVPVGAVIARIEEEGADAPAAAEAPPEPAAAAPASAPAT 104
Query: 484 VPSPAAPAPVETPSVP 499
S AA + +P+V
Sbjct: 105 AASAAAGRVLASPAVR 120
>gnl|CDD|216078 pfam00716, Peptidase_S21, Assemblin (Peptidase family S21).
Length = 326
Score = 32.4 bits (74), Expect = 0.47
Identities = 20/116 (17%), Positives = 30/116 (25%), Gaps = 5/116 (4%)
Query: 382 PPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPT 441
EV + VSP APS + + + ++ A SP
Sbjct: 216 AACHDEVVASKGGNDRGVSPGTAPSFDATPSVSPSGQPLSPAAPPGTSSVAGTALSASPA 275
Query: 442 TPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPS 497
V P + + A P + P P + PA P
Sbjct: 276 ALFGDM-----VYVPLDAYNQLLAGQAFNQPPDPQGPAPPAELAPPAPAPPPPANP 326
Score = 31.6 bits (72), Expect = 0.98
Identities = 20/100 (20%), Positives = 28/100 (28%), Gaps = 11/100 (11%)
Query: 360 SKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPP---VATPTET 416
S A T S S S P P P + + +P+ V P +
Sbjct: 234 SPGTAPSFDATPSVS----PSGQPLSPAA-PPGTSSVAGTALSASPAALFGDMVYVPLDA 288
Query: 417 TPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAP 456
A P P+P + PA + P A
Sbjct: 289 Y---NQLLAGQAFNQPPDPQGPAPPAELAPPAPAPPPPAN 325
>gnl|CDD|236154 PRK08119, PRK08119, flagellar motor switch protein; Validated.
Length = 382
Score = 32.5 bits (75), Expect = 0.48
Identities = 14/62 (22%), Positives = 19/62 (30%), Gaps = 1/62 (1%)
Query: 438 PSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVP-SPAAPAPVETP 496
E+ A+ A A P APP E +PV PA + P
Sbjct: 231 EEEVEEEEAQASPAAEPATAQAAPAPKQEQQQAPPQRQEPEKEAQPVNVQPAQFQSFDPP 290
Query: 497 SV 498
+
Sbjct: 291 PL 292
Score = 32.1 bits (74), Expect = 0.60
Identities = 13/45 (28%), Positives = 18/45 (40%)
Query: 358 EPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPV 402
E PAAEP+ + K+E +P +PV V P
Sbjct: 238 EAQASPAAEPATAQAAPAPKQEQQQAPPQRQEPEKEAQPVNVQPA 282
>gnl|CDD|213844 TIGR03657, IsdB, heme uptake protein IsdB. Isd proteins are
iron-regulated surface proteins found in Bacillus,
Staphylococcus and Listeria species and are responsible
for heme scavenging from hemoproteins. The IsdB protein
is only observed in Staphylococcus and consists of an
N-terminal hydrophobic signal sequence, a pair of tandem
NEAT (NEAr Transporter, pfam05031) domains which confers
the ability to bind heme and a C-terminal sortase
processing signal which targets the protein to the cell
wall. IsdB is believed to make a direct contact with
methemoglobin facilitating transfer of heme to IsdB. The
heme is then transferred to other cell wall-bound NEAT
domain proteins such as IsdA and IsdC.
Length = 644
Score = 33.0 bits (74), Expect = 0.49
Identities = 31/117 (26%), Positives = 49/117 (41%), Gaps = 4/117 (3%)
Query: 343 KDSWDNIWKKISQTIEPSKP--PAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVS 400
K+ DN KK + PSKP P E +S + P+V + A+S +
Sbjct: 464 KEQQDNSAKKETTPATPSKPTTPPVEKESQKQDSQKDDNKQSPSVEKENDASSESGKDKT 523
Query: 401 PVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPA 457
P P+ V + + TTP V + T+ A P A + V++ A S+ + A
Sbjct: 524 PATKPAKGEVES-SSTTPTKVVSTTQN-VAKPTTASSETTKDVVQTSAGSSEAKDSA 578
>gnl|CDD|132997 cd00761, Glyco_tranf_GTA_type, Glycosyltransferase family A (GT-A)
includes diverse families of glycosyl transferases with
a common GT-A type structural fold.
Glycosyltransferases (GTs) are enzymes that synthesize
oligosaccharides, polysaccharides, and glycoconjugates
by transferring the sugar moiety from an activated
nucleotide-sugar donor to an acceptor molecule, which
may be a growing oligosaccharide, a lipid, or a protein.
Based on the stereochemistry of the donor and acceptor
molecules, GTs are classified as either retaining or
inverting enzymes. To date, all GT structures adopt one
of two possible folds, termed GT-A fold and GT-B fold.
This hierarchy includes diverse families of glycosyl
transferases with a common GT-A type structural fold,
which has two tightly associated beta/alpha/beta domains
that tend to form a continuous central sheet of at least
eight beta-strands. The majority of the proteins in this
superfamily are Glycosyltransferase family 2 (GT-2)
proteins. But it also includes families GT-43, GT-6,
GT-8, GT13 and GT-7; which are evolutionarily related to
GT-2 and share structure similarities.
Length = 156
Score = 31.7 bits (72), Expect = 0.50
Identities = 17/79 (21%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
Query: 67 FDSRDETNLRLLSRPDLGITFTKIHAWRLTQYSKCVFLDADVLIVQNCDELFDREELSAA 126
+ +D +R+++ + G+ + + + +FLDAD L++ + E E L A
Sbjct: 47 YAKKDPRVIRVINEENQGLAAARNAGLKAARGEYILFLDADDLLLPDWLERLVAELL-AD 105
Query: 127 PDAGWPDCFNSGVFVFKPS 145
P+A G +F+
Sbjct: 106 PEAD--AVGGPGNLLFRRE 122
>gnl|CDD|183147 PRK11465, PRK11465, putative mechanosensitive channel protein;
Provisional.
Length = 741
Score = 32.8 bits (75), Expect = 0.51
Identities = 26/84 (30%), Positives = 32/84 (38%), Gaps = 2/84 (2%)
Query: 416 TTPAP-VSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTP 474
PA VS P T S + P+P +E A+ A DT + T
Sbjct: 13 GAPAHAVSIPGVTTTTSTDSTTEPAPEPDIEQKKAAYAALADVLDNDTSRKELIDQLRTA 72
Query: 475 AETPGAPEPVPSPAAPAPVETPSV 498
A TP EPVP P VE +V
Sbjct: 73 AATP-PAEPVPKIVPPTLVEEKTV 95
>gnl|CDD|182059 PRK09752, PRK09752, adhesin; Provisional.
Length = 1250
Score = 32.7 bits (74), Expect = 0.51
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 5/39 (12%)
Query: 471 PPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPV 509
PP+P + P+P P P P P P+ EPTP PV
Sbjct: 920 PPSPPD----PDPTPDPD-PTPDPDPTPDPEPTPAYQPV 953
Score = 28.9 bits (64), Expect = 8.4
Identities = 17/64 (26%), Positives = 24/64 (37%), Gaps = 18/64 (28%)
Query: 347 DNIWKKISQTIEPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPS 406
+N W SQ + P PP +P+ P+ P +P P P P P+
Sbjct: 908 NNDWYLRSQEVTPPSPPDPDPT-----------------PDPDPTPDPDPTP-DPEPTPA 949
Query: 407 TPPV 410
PV
Sbjct: 950 YQPV 953
>gnl|CDD|227398 COG5066, SCS2, VAMP-associated protein involved in inositol
metabolism [Intracellular trafficking and secretion].
Length = 242
Score = 32.2 bits (73), Expect = 0.53
Identities = 17/125 (13%), Positives = 24/125 (19%), Gaps = 2/125 (1%)
Query: 378 KESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPV 437
SS + K +S + P
Sbjct: 104 TSSSKKPIWTRKIRCVYSEEEISKNVHECSEDRGAAVLLVEMPTLLNILYLEVRFFVNQK 163
Query: 438 PSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPS 497
P P P V+ P T T + + P+ AA P E
Sbjct: 164 EVPAEPETQPPVQ--VKKEEVPPVTQKTVPHENEKQTSVSTPKPQNQIKEAATVPAENEP 221
Query: 498 VPAEP 502
Sbjct: 222 SSMPI 226
Score = 28.8 bits (64), Expect = 7.2
Identities = 21/120 (17%), Positives = 32/120 (26%), Gaps = 5/120 (4%)
Query: 377 KKESSPPTVPEVKPAASVEPVPVSPVPAP---STPPVATPTETTPAPVSTPTETAAASPV 433
S V + V V P + + V ET V
Sbjct: 118 CVYSEEEISKNVHECSEDRGAAVLLVEMPTLLNILYLEVRFFVNQKEVPAEPETQPPVQV 177
Query: 434 AAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPV 493
P T P + + + P P + A PAE + P+ P A + +
Sbjct: 178 KKEEVPPVTQKTVPHENEKQTSVSTP--KPQNQIKEAATVPAENEPSSMPIFVPVALSIL 235
>gnl|CDD|223041 PHA03321, PHA03321, tegument protein VP11/12; Provisional.
Length = 694
Score = 32.6 bits (74), Expect = 0.54
Identities = 30/144 (20%), Positives = 43/144 (29%), Gaps = 16/144 (11%)
Query: 358 EPSKPPAAEPSQTTSES----TEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATP 413
+P PP A P T + + ++ + P + A P +P P P+ P
Sbjct: 441 DPPPPPRARPGSTPACARRARAQRARDAGPEYVDPLGALRRLPAGAAPPPEPAAAP---- 496
Query: 414 TETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEA-PAAPVDTPVTPVASAPP 472
+T P P + T P P A P D + P
Sbjct: 497 ------SPATYYTRMGGGPPRLPPRNRATETLRPDWGPPAAAPPEQMEDPYLEPDDDRFD 550
Query: 473 TPAETPGAPEPVPSPAAPAPVETP 496
A P APAP + P
Sbjct: 551 RRDGAAAAATSHP-REAPAPDDDP 573
Score = 29.9 bits (67), Expect = 3.5
Identities = 25/101 (24%), Positives = 29/101 (28%), Gaps = 3/101 (2%)
Query: 404 APSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAP--VD 461
P PP A P T PA A V PA + P PAA
Sbjct: 441 DPPPPPRARPGST-PACARRARAQRARDAGPEYVDPLGALRRLPAGAAPPPEPAAAPSPA 499
Query: 462 TPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEP 502
T T + PP A E + P P +P
Sbjct: 500 TYYTRMGGGPPRLPPRNRATETLRPDWGPPAAAPPEQMEDP 540
Score = 29.2 bits (65), Expect = 7.1
Identities = 20/80 (25%), Positives = 26/80 (32%), Gaps = 5/80 (6%)
Query: 427 TAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPS 486
++ P AP P P + P PA A P + GA +P+
Sbjct: 425 LSSRQPPGAPAPRRDNDPPPPPRARPGSTPACARRARAQRARDAGPEYVDPLGALRRLPA 484
Query: 487 PAAPAPVETPSVPAEPTPTA 506
AAP P PA A
Sbjct: 485 GAAPPP-----EPAAAPSPA 499
>gnl|CDD|99910 cd05568, PTS_IIB_bgl_like, PTS_IIB_bgl_like: the PTS
(phosphotransferase system) IIB domain of a family of
sensory systems composed of a membrane-bound
sugar-sensor (similar to BglF) and a transcription
antiterminator (similar to BglG) which regulate
expression of genes involved in sugar utilization. The
domain architecture of the IIB-containing protein
includes a region N-terminal to the IIB domain which is
homologous to the BglG transcription antiterminator
with an RNA-binding domain followed by two homologous
domains, PRD1 and PRD2 (PTS Regulation Domains).
C-terminal to the IIB domain is a domain similar to the
PTS IIA domain. In this system, the BglG-like region
and the IIB and IIA-like domains are all expressed
together as a single multidomain protein. The IIB
domain fold includes a central four-stranded parallel
open twisted beta-sheet flanked by alpha-helices on
both sides. The seven major PTS systems with this IIB
fold include this sensory system with similarity to the
bacterial bgl system, chitobiose/lichenan, ascorbate,
lactose, galactitol, mannitol, and fructose systems.
Length = 85
Score = 30.2 bits (69), Expect = 0.56
Identities = 14/55 (25%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 39 AILITP---GVTLAMKNELLKVFNFVKEVDVFDSRDETNLRLLSRPDLGITFTKI 90
A+++ P G + +K++L K+F ++ +DV R+ + L DL I+ +
Sbjct: 3 ALVVCPSGIGTSRLLKSKLKKLFPEIEIIDVISLRELEEVDLDD-YDLIISTVPL 56
>gnl|CDD|165468 PHA03201, PHA03201, uracil DNA glycosylase; Provisional.
Length = 318
Score = 32.2 bits (73), Expect = 0.56
Identities = 29/95 (30%), Positives = 33/95 (34%), Gaps = 13/95 (13%)
Query: 398 PVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPA--ASTPVEA 455
S P+P P P TP + ASP P P E P A+ P
Sbjct: 4 ARSRSPSPPRRP--------SPPRPTPPRSPDASPEETPPSPPGPGAEPPPGRAAGPAAP 55
Query: 456 PAAPVDTP--VTPVASAPPTPA-ETPGAPEPVPSP 487
P P VT +SAPP P AP P P
Sbjct: 56 RRRPRGCPAGVTFSSSAPPRPPLGLDDAPAATPPP 90
Score = 29.9 bits (67), Expect = 3.5
Identities = 22/74 (29%), Positives = 28/74 (37%), Gaps = 1/74 (1%)
Query: 429 AASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPA 488
A S +P P+ P +P S P +P +P P A PP A P AP P
Sbjct: 4 ARSRSPSPPRRPSPPRPTPPRS-PDASPEETPPSPPGPGAEPPPGRAAGPAAPRRRPRGC 62
Query: 489 APAPVETPSVPAEP 502
+ S P P
Sbjct: 63 PAGVTFSSSAPPRP 76
>gnl|CDD|234938 PRK01297, PRK01297, ATP-dependent RNA helicase RhlB; Provisional.
Length = 475
Score = 32.6 bits (74), Expect = 0.56
Identities = 15/58 (25%), Positives = 20/58 (34%)
Query: 449 ASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTA 506
A P AP +P P P + PA AP A + P +P P +
Sbjct: 14 AEQPAPAPPSPAAAPAPPPPAKTAAPATKAAAPAAAAPRAEKPKKDKPRRERKPKPAS 71
Score = 32.6 bits (74), Expect = 0.59
Identities = 17/63 (26%), Positives = 21/63 (33%), Gaps = 2/63 (3%)
Query: 454 EAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEP--TPTASPVQT 511
EA P A APP PA+T +PAA AP +P P
Sbjct: 13 EAEQPAPAPPSPAAAPAPPPPAKTAAPATKAAAPAAAAPRAEKPKKDKPRRERKPKPASL 72
Query: 512 SQP 514
+
Sbjct: 73 WKL 75
Score = 32.2 bits (73), Expect = 0.62
Identities = 20/66 (30%), Positives = 26/66 (39%), Gaps = 3/66 (4%)
Query: 431 SPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAP--EPVPSPA 488
P P+P +P +PA P AAP P A+AP P E P PA
Sbjct: 12 GEAEQPAPAPPSPAAAPAPPPPA-KTAAPATKAAAPAAAAPRAEKPKKDKPRRERKPKPA 70
Query: 489 APAPVE 494
+ +E
Sbjct: 71 SLWKLE 76
Score = 29.9 bits (67), Expect = 3.5
Identities = 17/61 (27%), Positives = 23/61 (37%), Gaps = 3/61 (4%)
Query: 415 ETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTP 474
E + P+ AA +P P P+ T + AA+ AP A P P P
Sbjct: 13 EAEQPAPAPPSPAAAPAP---PPPAKTAAPATKAAAPAAAAPRAEKPKKDKPRRERKPKP 69
Query: 475 A 475
A
Sbjct: 70 A 70
Score = 29.1 bits (65), Expect = 6.7
Identities = 21/63 (33%), Positives = 23/63 (36%), Gaps = 8/63 (12%)
Query: 401 PVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTP-VEAPAAP 459
P PAP +P A P PA + P AAA AAP E P P E P
Sbjct: 17 PAPAPPSPA-AAPAPPPPAKTAAPATKAAAPAAAAPRA------EKPKKDKPRRERKPKP 69
Query: 460 VDT 462
Sbjct: 70 ASL 72
Score = 29.1 bits (65), Expect = 6.8
Identities = 12/66 (18%), Positives = 17/66 (25%), Gaps = 7/66 (10%)
Query: 359 PSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATP-TETT 417
++ PA P + + A P + P P P E
Sbjct: 13 EAEQPAPAPPSPAAAPAPPPPAKTAAPATKAAA------PAAAAPRAEKPKKDKPRRERK 66
Query: 418 PAPVST 423
P P S
Sbjct: 67 PKPASL 72
Score = 28.7 bits (64), Expect = 8.2
Identities = 14/67 (20%), Positives = 18/67 (26%), Gaps = 5/67 (7%)
Query: 377 KKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAP 436
K E+ P PAA+ P P P + A P P
Sbjct: 11 KGEAEQPAPAPPSPAAA--PAPPPPAKTAAPATKAAAPAAAAPRAEKP---KKDKPRRER 65
Query: 437 VPSPTTP 443
P P +
Sbjct: 66 KPKPASL 72
Score = 28.7 bits (64), Expect = 8.7
Identities = 13/60 (21%), Positives = 19/60 (31%), Gaps = 1/60 (1%)
Query: 443 PVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEP 502
P +P + AP P T +A P A P A +P P+ +
Sbjct: 17 PAPAPPSPAAAPAPPPPAKTAAPATKAAAP-AAAAPRAEKPKKDKPRRERKPKPASLWKL 75
>gnl|CDD|218637 pfam05558, DREPP, DREPP plasma membrane polypeptide. This family
contains several plant plasma membrane proteins termed
DREPPs as they are developmentally regulated plasma
membrane polypeptides.
Length = 201
Score = 31.9 bits (72), Expect = 0.57
Identities = 27/135 (20%), Positives = 37/135 (27%), Gaps = 8/135 (5%)
Query: 355 QTIEPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPA----ASVEPVPVSPVPAPSTPPV 410
+T+ K + +T+ +E P K + V P VS V
Sbjct: 67 KTLVKEKKVSGLKKNSTAVQKFLEELVKIEFPGSKAVSEASSKVGPALVSGPVFFVFEKV 126
Query: 411 AT--PTETTPAPVSTPTETAAASPVAA--PVPSPTTPVESPAASTPVEAPAAPVDTPVTP 466
+T E P + ET V V E + AP
Sbjct: 127 STFIVEEKKPEEEAPAAETEKKPAVKEKEIVVEEEKKEEEAVPVAAAPSTKAPETKVEET 186
Query: 467 VASAPPTPAETPGAP 481
A AP PA P
Sbjct: 187 PAKAPAAPAAEPQKA 201
>gnl|CDD|226348 COG3827, COG3827, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 231
Score = 32.1 bits (73), Expect = 0.58
Identities = 33/173 (19%), Positives = 52/173 (30%), Gaps = 19/173 (10%)
Query: 347 DNIWKKISQTIEPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPS 406
+ I I + IE S + S+ E E++ P P + V A
Sbjct: 2 EEILASIRRIIEDS-----DFSRQLDEDPASGEAAFAAEPVAPPDRKPQAV------AAR 50
Query: 407 TPPVATPTETTPAPVSTPTET-------AAASPVAAPVPSPTTPVESPAASTPVEAPAAP 459
+P V +P PT AA + AAP P+ ++P A
Sbjct: 51 SPAVDARM-NEQSPSQAPTLAEVAARVRAAIARDAAPGPAAVAQAQNPDEKKNEPASIED 109
Query: 460 VDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQTS 512
+ ++ V + P + S P E + E T S
Sbjct: 110 IVKEISGVIAPKARPPKNAAGENAPASEDRPESTEAVTQSEEATAIKSAPAAI 162
>gnl|CDD|117486 pfam08919, F_actin_bind, F-actin binding. The F-actin binding
domain forms a compact bundle of four antiparallel
alpha-helices, which are arranged in a left-handed
topology. Binding of F-actin to the F-actin binding
domain may result in cytoplasmic retention and
subcellular distribution of the protein, as well as
possible inhibition of protein function.
Length = 179
Score = 31.6 bits (71), Expect = 0.64
Identities = 18/57 (31%), Positives = 25/57 (43%)
Query: 378 KESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVA 434
K+ PP VP+ + A P SPVP PST P + P S ++ V+
Sbjct: 4 KKPVPPAVPKPQSTAKPVGTPPSPVPLPSTSPSPSKMANGTQPSSAAFIPLISTRVS 60
Score = 31.2 bits (70), Expect = 0.82
Identities = 18/69 (26%), Positives = 26/69 (37%), Gaps = 1/69 (1%)
Query: 418 PAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAET 477
P P + P + A PV P P SP+ S + P P+ S + +T
Sbjct: 6 PVPPAVPKPQSTAKPVGTPPSPVPLPSTSPSPS-KMANGTQPSSAAFIPLISTRVSLRKT 64
Query: 478 PGAPEPVPS 486
PE + S
Sbjct: 65 RQPPERIAS 73
>gnl|CDD|234504 TIGR04216, halo_surf_glyco, major cell surface glycoprotein.
Members of this family are the S-layer-forming
halobacterial major cell surface glycoprotein. The
highest scores below model cutoffs are fragmentary
paralogs to actual members of the family. Modifications
include at N-linked and O-linked glycosylation, a
C-terminal diphytanylglyceryl modification, and probable
cleavage of the PGF-CTERM tail.
Length = 782
Score = 32.5 bits (74), Expect = 0.64
Identities = 13/57 (22%), Positives = 17/57 (29%), Gaps = 7/57 (12%)
Query: 462 TPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQTSQPCAST 518
V V T P +P T + P E T TA P T++
Sbjct: 703 VNVEVVEETERPDTTTSEDPTTTTTP-------TTTGPEETTETAEPTTTTEEPTEE 752
Score = 32.2 bits (73), Expect = 0.88
Identities = 15/60 (25%), Positives = 20/60 (33%), Gaps = 2/60 (3%)
Query: 397 VPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAP 456
V V V P T + P +TPT T P+ TT + +T P
Sbjct: 703 VNVEVVEETERPDTTTSED--PTTTTTPTTTGPEETTETAEPTTTTEEPTEETTTGSSTP 760
>gnl|CDD|234229 TIGR03490, Mycoplas_LppA, mycoides cluster lipoprotein, LppA/P72
family. Members of this protein family occur in
Mycoplasma mycoides, Mycoplasma hyopneumoniae, and
related Mycoplasmas in small paralogous families that
may also include truncated forms and/or pseudogenes.
Members are predicted lipoproteins with a conserved
signal peptidase II processing and lipid attachment
site. Note that the name for certain characterized
members, p72, reflects an anomalous apparent molecular
weight, given a theoretical MW of about 61 kDa.
Length = 541
Score = 32.5 bits (74), Expect = 0.65
Identities = 13/76 (17%), Positives = 28/76 (36%), Gaps = 2/76 (2%)
Query: 354 SQTIEPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAP--STPPVA 411
S + +P K P +P++ T + +K ++ P+ + + +P P +
Sbjct: 29 SNSKQPEKKPEIKPNENTPKIPKKPDNKEPSENNNNKSNNENKDEENPSSTNPEKKPDPS 88
Query: 412 TPTETTPAPVSTPTET 427
E P P +
Sbjct: 89 KNKEEIEKPKDEPKKP 104
>gnl|CDD|148271 pfam06566, Chon_Sulph_att, Chondroitin sulphate attachment domain.
This family represents the chondroitin sulphate
attachment domain of vertebrate neural transmembrane
proteoglycans that contain EGF modules. Evidence has
been accumulated to support the idea that neural
proteoglycans are involved in various cellular events
including mitogenesis, differentiation, axonal outgrowth
and synaptogenesis. This domain contains several
potential sites of chondroitin sulphate attachment, as
well as potential sites of N-linked glycosylation.
Length = 253
Score = 31.9 bits (72), Expect = 0.68
Identities = 18/87 (20%), Positives = 28/87 (32%)
Query: 413 PTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPP 472
++ PA + TP E S + +P T P+ + P +PV
Sbjct: 95 DSQGLPATLPTPDEALGNSNPSLALPEATEASNPPSPGPGDKPSLLPELPKESPVEVWLN 154
Query: 473 TPAETPGAPEPVPSPAAPAPVETPSVP 499
TP P P+ A +E
Sbjct: 155 LGGSTPDPAAPEPTSPAQGTLEPQPAS 181
Score = 29.6 bits (66), Expect = 4.1
Identities = 33/138 (23%), Positives = 41/138 (29%), Gaps = 20/138 (14%)
Query: 394 VEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAAS--------PVAAPVPSPTTPVE 445
P V AP P V + TPT AS A S P
Sbjct: 43 TSPEEVGSEEAPVGPGVGPEEGLEASAAVTPTAWLEASSPGLGGVTAEAGSGDSQGLPAT 102
Query: 446 SPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVE---------TP 496
P + + P AS PP+P PG +P P P +
Sbjct: 103 LPTPDEALGNSNPSLALPEATEASNPPSP--GPGD-KPSLLPELPKESPVEVWLNLGGST 159
Query: 497 SVPAEPTPTASPVQTSQP 514
PA P PT+ T +P
Sbjct: 160 PDPAAPEPTSPAQGTLEP 177
>gnl|CDD|215182 PLN02321, PLN02321, 2-isopropylmalate synthase.
Length = 632
Score = 32.2 bits (73), Expect = 0.71
Identities = 17/77 (22%), Positives = 31/77 (40%), Gaps = 2/77 (2%)
Query: 403 PAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDT 462
P S+ A+P ++ A PT ++A+S + SP+ ++ +A +
Sbjct: 5 PNLSSATAASPAKSLSAFTPAPTRSSASSARFPAFLARPAAARSPSLASRAS--SALAAS 62
Query: 463 PVTPVASAPPTPAETPG 479
P P + P P P
Sbjct: 63 PSRPQVARRPRPEYIPN 79
>gnl|CDD|236555 PRK09537, pylS, pyrolysyl-tRNA synthetase; Reviewed.
Length = 417
Score = 32.1 bits (73), Expect = 0.73
Identities = 13/56 (23%), Positives = 19/56 (33%)
Query: 374 STEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAA 429
+ KK+ + P P PVP + S P + P T P T +
Sbjct: 100 APTKKKKAMPKSVVRAPKPLENPVPAQAESSGSKPVPSIPVSTPEVKAPAPALTPS 155
Score = 31.3 bits (71), Expect = 1.2
Identities = 17/77 (22%), Positives = 26/77 (33%), Gaps = 1/77 (1%)
Query: 340 YLGKDSWDNIWKKISQTIEPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPV 399
+L K D K+ P+K A P + P E + V +PV
Sbjct: 82 FLTKTFEDKTQVKVKVVSAPTKKKKAMPKSVVRAPKPLENPVPAQA-ESSGSKPVPSIPV 140
Query: 400 SPVPAPSTPPVATPTET 416
S + P TP++
Sbjct: 141 STPEVKAPAPALTPSQK 157
Score = 30.6 bits (69), Expect = 2.2
Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 5/61 (8%)
Query: 371 TSESTEKKESSPPTVP-EVKPAASVEPVPVSPV---PAPSTPPVATPTETTPAPVSTPTE 426
S T+KK++ P +V KP + P P PS P + PAP TP++
Sbjct: 98 VSAPTKKKKAMPKSVVRAPKPLENPVPAQAESSGSKPVPSIPVSTPEVK-APAPALTPSQ 156
Query: 427 T 427
Sbjct: 157 K 157
Score = 29.0 bits (65), Expect = 5.9
Identities = 20/91 (21%), Positives = 30/91 (32%), Gaps = 4/91 (4%)
Query: 414 TETTPAPVSTPTETAAASP-VAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPP 472
T+ VS PT+ A P P P A + P PV+ P
Sbjct: 91 TQVKVKVVSAPTKKKKAMPKSVVRAPKPLENPVPAQAESSGSKPV--PSIPVSTPEVKAP 148
Query: 473 TPAETPGAPEPVPSPAAPAPVETPSVPAEPT 503
PA TP + + + +P + +P
Sbjct: 149 APALTPSQKDRLETLLSPKD-KISLNSEKPK 178
>gnl|CDD|177618 PHA03381, PHA03381, tegument protein VP22; Provisional.
Length = 290
Score = 31.9 bits (72), Expect = 0.76
Identities = 30/158 (18%), Positives = 45/158 (28%), Gaps = 15/158 (9%)
Query: 363 PAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVS 422
P A P++ + E + + A A + +E
Sbjct: 28 PDASPARVSFEEPADRARRGAGQARGRSQAERRFHHYDEARADYPYYTGSSSEDERPADP 87
Query: 423 TPTETAAASPVAAPVPSPTTPVESPAAS------TPVEAPAAPVDTPVTPVASAPPTPAE 476
P+ A P A P P PA S +P P + +
Sbjct: 88 RPSRRPHAQPEA-SGPGPARGARGPAGSRGRGRRAESPSPRDPPNPKGASAPRGRKSACA 146
Query: 477 TPGAPEPVPSPAAPAPVETPSV--------PAEPTPTA 506
A P+PAAP +TP+ A +PTA
Sbjct: 147 DSAALLDAPAPAAPKRQKTPAGLARKLHFSTAPTSPTA 184
Score = 31.9 bits (72), Expect = 0.79
Identities = 28/105 (26%), Positives = 33/105 (31%), Gaps = 5/105 (4%)
Query: 400 SPVPAPSTPPVATPTETTPAPVSTPTETAAASPVA--APVPSPTTPVESPAASTPVEAPA 457
P PS P A P + P P A + A PSP P AS P +
Sbjct: 84 PADPRPSRRPHAQPEASGPGPARGARGPAGSRGRGRRAESPSPRDPPNPKGASAPRGRKS 143
Query: 458 APVDTPVTPVASAPPTP---AETPGAPEPVPSPAAPAPVETPSVP 499
A D+ A AP P G + AP P P
Sbjct: 144 ACADSAALLDAPAPAAPKRQKTPAGLARKLHFSTAPTSPTAPWTP 188
>gnl|CDD|218107 pfam04484, DUF566, Family of unknown function (DUF566). Family of
related proteins that is plant specific.
Length = 313
Score = 31.8 bits (72), Expect = 0.80
Identities = 15/114 (13%), Positives = 38/114 (33%), Gaps = 2/114 (1%)
Query: 405 PSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPV 464
++ P ++ + + + ++ + AP P++ +S+ P
Sbjct: 13 DASSPRSSSRRRLSSSFLSTSASSRPRRLNAPASPPSSSPARNTSSSSSFGL--SKQRPS 70
Query: 465 TPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQTSQPCAST 518
+ + +P P + + + T S +P+ S TS +S
Sbjct: 71 SLSRGRLSSRFVSPSRGSPSAAASLNGSLATASTSGSSSPSRSRRTTSSDLSSG 124
>gnl|CDD|133051 cd06429, GT8_like_1, GT8_like_1 represents a subfamily of GT8 with
unknown function. A subfamily of glycosyltransferase
family 8 with unknown function: Glycosyltransferase
family 8 comprises enzymes with a number of known
activities; lipopolysaccharide galactosyltransferase
lipopolysaccharide glucosyltransferase 1, glycogenin
glucosyltransferase and inositol
1-alpha-galactosyltransferase. It is classified as a
retaining glycosyltransferase, based on the relative
anomeric stereochemistry of the substrate and product in
the reaction catalyzed.
Length = 257
Score = 31.6 bits (72), Expect = 0.84
Identities = 31/148 (20%), Positives = 49/148 (33%), Gaps = 26/148 (17%)
Query: 20 LGALVVANSLKRVNTVHDLAI--LITPGVTL-AMK-----NELLKVFNFVKEVDVF---D 68
L A VV NS N + ++T AM+ N L V D F
Sbjct: 11 LAAAVVINSSISNNKDPSNLVFHIVTDNQNYGAMRSWFDLNPLKIATVKVLNFDDFKLLG 70
Query: 69 SRDETNLRLLSRPD--LGITFTKIHAWRLTQYS------------KCVFLDADVLIVQNC 114
+L L + K L ++ K ++LD DV++ ++
Sbjct: 71 KVKVDSLMQLESEADTSNLKQRKPEYISLLNFARFYLPELFPKLEKVIYLDDDVVVQKDL 130
Query: 115 DELFDREELSAAPDAGWPDCFNSGVFVF 142
EL++ +L +N GV V
Sbjct: 131 TELWN-TDLGGGVAGAVETSWNPGVNVV 157
>gnl|CDD|219047 pfam06473, FGF-BP1, FGF binding protein 1 (FGF-BP1). This family
consists of several mammalian FGF binding protein 1.
Fibroblast growth factors (FGFs) play important roles
during fetal and embryonic development. Fibroblast
growth factor-binding protein (FGF-BP) 1 is a secreted
protein that can bind fibroblast growth factors (FGFs) 1
and 2.
Length = 229
Score = 31.3 bits (71), Expect = 0.87
Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
Query: 351 KKISQTIEPSKPPAAEP-SQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPP 409
K+++ T+E S+ P EP S + SE + KE S ++K ++ P P
Sbjct: 133 KQVTSTLEGSEGPRQEPRSPSPSEHDKGKEKSSEE-KKLKKDSNSGVTKTKATKLPECKP 191
Query: 410 VATPTE 415
E
Sbjct: 192 TQAGVE 197
>gnl|CDD|226266 COG3743, COG3743, Uncharacterized conserved protein [Function
unknown].
Length = 133
Score = 30.6 bits (69), Expect = 0.89
Identities = 18/66 (27%), Positives = 21/66 (31%), Gaps = 12/66 (18%)
Query: 426 ETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVP 485
TA A A T VE+ + A APV P E P
Sbjct: 13 ATAKAGADAPAAAEAATTVEAAPDAKAAAAVKAPVSAP------------EAAADPAGAD 60
Query: 486 SPAAPA 491
+PAAP
Sbjct: 61 APAAPK 66
Score = 29.8 bits (67), Expect = 1.8
Identities = 24/73 (32%), Positives = 32/73 (43%), Gaps = 7/73 (9%)
Query: 389 KPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPA 448
+P A P + A + P A TT + + AAA V APV +P E+ A
Sbjct: 2 RPMAKAAPEKAATAKAGADAPAAAEAATT-VEAAPDAKAAAA--VKAPVSAP----EAAA 54
Query: 449 ASTPVEAPAAPVD 461
+APAAP D
Sbjct: 55 DPAGADAPAAPKD 67
>gnl|CDD|221509 pfam12287, Caprin-1_C, Cytoplasmic
activation/proliferation-associated protein-1 C term.
This family of proteins is found in eukaryotes. Proteins
in this family are typically between 343 and 708 amino
acids in length. This family is the C terminal region of
caprin-1. Caprin-1 is a protein involved in regulating
cellular proliferation. In mutated phenotypes, the G1
phase of the cell cycle is greatly lengthened, impairing
normal proliferation. The C terminal region of caprin-1
contains RGG motifs which are characteristic of RNA
binding domains. It is possible that caprin-1 functions
through an RNA binding mechanism.
Length = 319
Score = 31.5 bits (71), Expect = 0.96
Identities = 22/120 (18%), Positives = 40/120 (33%)
Query: 388 VKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESP 447
+KPA S++ + P S ++ P+ P T + + P
Sbjct: 29 MKPAQSMDLPQMVCPPVHSESRLSQPSAVPVQPEPTQVPMVSPTSEGYTSSPPLYQPSHT 88
Query: 448 AASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTAS 507
A P P P+ ++ + PT + P A +P P+ + + P S
Sbjct: 89 AEPRPQTDPIDPIQASMSLNSEQTPTSSSLPAASQPQVFQTGSKPLHSSGINVNAAPFQS 148
Score = 29.2 bits (65), Expect = 5.6
Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 2/84 (2%)
Query: 433 VAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAP 492
V PV S + + A E P+ +P + ++ P + EP P P
Sbjct: 41 VCPPVHSESRLSQPSAVPVQPEPTQVPMVSPTSEGYTSSPPLYQPSHTAEPRPQTDPIDP 100
Query: 493 VETP-SVPAEPTPTASPV-QTSQP 514
++ S+ +E TPT+S + SQP
Sbjct: 101 IQASMSLNSEQTPTSSSLPAASQP 124
>gnl|CDD|237940 PRK15313, PRK15313, autotransport protein MisL; Provisional.
Length = 955
Score = 32.1 bits (72), Expect = 0.98
Identities = 27/102 (26%), Positives = 38/102 (37%), Gaps = 26/102 (25%)
Query: 353 ISQTIEPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPV-PAPSTPPVA 411
++ IEP +P +P P +P+ V+P PV PV P P P
Sbjct: 554 LTSYIEPDEPIIPDPVD-------------PVIPDPVIPDPVDPDPVDPVIPDPVIPDPV 600
Query: 412 TPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPV 453
P P PV PV +P PT P + + P+
Sbjct: 601 DPDPVDPEPV---------DPV---IPDPTIPDIGQSDTPPI 630
Score = 30.2 bits (67), Expect = 3.4
Identities = 21/63 (33%), Positives = 25/63 (39%), Gaps = 6/63 (9%)
Query: 453 VEAPAAPVDTPVTPVASAPPTPAETPGAPEPV----PSPAAPAPVETPSVPAEPTPTASP 508
+E + PV PV P P P P+PV P P P PV+ V EP P
Sbjct: 558 IEPDEPIIPDPVDPVIPDPVIP--DPVDPDPVDPVIPDPVIPDPVDPDPVDPEPVDPVIP 615
Query: 509 VQT 511
T
Sbjct: 616 DPT 618
>gnl|CDD|216860 pfam02063, MARCKS, MARCKS family.
Length = 296
Score = 31.3 bits (70), Expect = 1.0
Identities = 23/103 (22%), Positives = 34/103 (33%), Gaps = 1/103 (0%)
Query: 358 EPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETT 417
E + P E +E +E + PE A E P P + E
Sbjct: 191 EEAAAPGEEAGAAGAEGEAGEEPAADAEPEQPEAKPEEAAPEKPQAEEAKAAEEQKAEEK 250
Query: 418 PAPVSTPTETAAASPVAAPVPSPT-TPVESPAASTPVEAPAAP 459
PA + + A +P A +P P P + +P AP
Sbjct: 251 PAEEAGASSAAQEAPAAEQEAAPAEEPAAPPQEACSESSPEAP 293
Score = 28.6 bits (63), Expect = 8.5
Identities = 24/95 (25%), Positives = 27/95 (28%), Gaps = 3/95 (3%)
Query: 426 ETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVP 485
E AA A + E PAA E P A + A A E P
Sbjct: 192 EAAAPGEEAGAAGAEGEAGEEPAADAEPEQPEAKPEEAAPEKPQAEEAKAAEEQKAEEKP 251
Query: 486 SPAAPAPVETPSVPA---EPTPTASPVQTSQPCAS 517
+ A A PA E P P Q S
Sbjct: 252 AEEAGASSAAQEAPAAEQEAAPAEEPAAPPQEACS 286
>gnl|CDD|221745 pfam12737, Mating_C, C-terminal domain of homeodomain 1. Mating in
fungi is controlled by the loci that determine the
mating type of an individual, and only individuals with
differing mating types can mate. Basidiomycete fungi
have evolved a unique mating system, termed tetrapolar
or bifactorial incompatibility, in which mating type is
determined by two unlinked loci; compatibility at both
loci is required for mating to occur. The multi-allelic
tetrapolar mating system is considered to be a novel
innovation that could have only evolved once, and is
thus unique to the mushroom fungi. This domain is
C-terminal to the homeodomain transcription factor
region.
Length = 418
Score = 31.7 bits (72), Expect = 1.0
Identities = 38/146 (26%), Positives = 51/146 (34%), Gaps = 25/146 (17%)
Query: 386 PEVKPAASVEPVPVSPVPAPSTPPVATPTETTP----APVSTPTETAAA-------SPVA 434
PE PA S E +SP P+ + T + + E A S
Sbjct: 74 PERSPALSSER-LLSPSPSVLDLSPVLASPQTGKRRRSSSPSDDEDEAERPSKRPRSDSI 132
Query: 435 APVPSPTTPVE----SPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGA---------P 481
+ SP P E SPAAST E A TP S P TP +T +
Sbjct: 133 SSSSSPAKPPEACLPSPAASTQDELSEASAAPLPTPSLSPPHTPTDTAPSGKRKRRLSDG 192
Query: 482 EPVPSPAAPAPVETPSVPAEPTPTAS 507
+P+P P P ++P P +
Sbjct: 193 FQLPAPKRPQTSSRPQTVSDPLPLHA 218
>gnl|CDD|227709 COG5422, ROM1, RhoGEF, Guanine nucleotide exchange factor for
Rho/Rac/Cdc42-like GTPases [Signal transduction
mechanisms].
Length = 1175
Score = 31.8 bits (72), Expect = 1.0
Identities = 15/98 (15%), Positives = 31/98 (31%)
Query: 163 DDATRQLQKPLNMRNLPKSFFQPPSTGSRSPSVSSISHSRENSADSAFGTSTITSTSSSV 222
+T P+ + S P+ SR S S S + + + + TS+
Sbjct: 151 SSSTHGTHPPIVFTDNNGSHAGAPNARSRKEIPSLGSQSMQLPSPHFRQKFSSSDTSNGF 210
Query: 223 SGGGLQIAHPRAHSSPASLQQTYASAQQQHQQHLKQRS 260
S ++ + +S S + + + S
Sbjct: 211 SYPSIRKNSRHSSNSMPSFPHSSTAVLLKRHSGSSGAS 248
>gnl|CDD|215039 PLN00041, PLN00041, photosystem I reaction center subunit II;
Provisional.
Length = 196
Score = 31.1 bits (70), Expect = 1.1
Identities = 19/66 (28%), Positives = 26/66 (39%), Gaps = 2/66 (3%)
Query: 356 TIEPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTE 415
T S + S+ST K +S V+ AA+ E P TPP P
Sbjct: 5 TPASSGRKLVPWASFLSKSTSKAPASLSATRAVRAAAAAEEAAAKEAPVGFTPPTLNP-- 62
Query: 416 TTPAPV 421
TP+P+
Sbjct: 63 NTPSPI 68
Score = 28.0 bits (62), Expect = 9.5
Identities = 12/68 (17%), Positives = 22/68 (32%), Gaps = 1/68 (1%)
Query: 418 PAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAE- 476
+ + P A+ + T+ + ++T AA + A TP
Sbjct: 1 TTITTPASSGRKLVPWASFLSKSTSKAPASLSATRAVRAAAAAEEAAAKEAPVGFTPPTL 60
Query: 477 TPGAPEPV 484
P P P+
Sbjct: 61 NPNTPSPI 68
>gnl|CDD|227507 COG5180, PBP1, Protein interacting with poly(A)-binding protein
[RNA processing and modification].
Length = 654
Score = 31.6 bits (71), Expect = 1.1
Identities = 27/162 (16%), Positives = 45/162 (27%), Gaps = 23/162 (14%)
Query: 340 YLGKDSWDNIWKKISQTIEPSKPPAAEPSQTTSESTEKKESS------------------ 381
Y +W N ++ +T P + A + +QT + +
Sbjct: 465 YFTAPTWLNTIEESYKTFFPDEDTAIQEAQTRFQQRQLNSMGNAVPGMNPAMGMNMGGMM 524
Query: 382 --PPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPS 439
P P P + + P P P+P P + + S
Sbjct: 525 GFPMGGPSASPNPMMNGFAAGSMGM-YMPFQPQPMFYHPSPQMMPVMGSNGAEEGGGNIS 583
Query: 440 PTTPVESPAA--STPVEAPAAPVDTPVTPVASAPPTPAETPG 479
P P AA P+ A P P + + P+ G
Sbjct: 584 PHVPAGFMAAGPGAPMGAFGYPGGIPFQGMMGSGPSGMPANG 625
>gnl|CDD|152115 pfam11679, DUF3275, Protein of unknown function (DUF3275). This
family of proteins with unknown function appear to be
restricted to Proteobacteria.
Length = 211
Score = 31.0 bits (70), Expect = 1.1
Identities = 18/66 (27%), Positives = 24/66 (36%), Gaps = 3/66 (4%)
Query: 413 PTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPP 472
P T P E+ A+ AAPV S P SP + P A+ + P
Sbjct: 90 PRRTEPQEPDPLDESPAS---AAPVASAPAPAPSPQSPKPASRRASRDMRRIAPFGMNAS 146
Query: 473 TPAETP 478
PA+
Sbjct: 147 APAQEA 152
Score = 29.4 bits (66), Expect = 3.6
Identities = 18/60 (30%), Positives = 23/60 (38%), Gaps = 1/60 (1%)
Query: 398 PVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPA 457
P P P +P A P + PAP +P AS A+ P AS P + A
Sbjct: 95 PQEPDPLDESPASAAPVASAPAPAPSPQSPKPASRRASRDMRRIAPFGM-NASAPAQEAA 153
Score = 29.1 bits (65), Expect = 5.0
Identities = 13/49 (26%), Positives = 20/49 (40%), Gaps = 4/49 (8%)
Query: 444 VESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAP 492
++ + P D P+ +P + A AP P PSP +P P
Sbjct: 82 IDKLSRDEPRRTEPQEPD----PLDESPASAAPVASAPAPAPSPQSPKP 126
>gnl|CDD|219355 pfam07267, Nucleo_P87, Nucleopolyhedrovirus capsid protein P87.
This family consists of several Nucleopolyhedrovirus
capsid protein P87 sequences. P87 is expressed late in
infection and concentrated in infected cell nuclei.
Length = 606
Score = 31.8 bits (72), Expect = 1.1
Identities = 20/81 (24%), Positives = 29/81 (35%), Gaps = 4/81 (4%)
Query: 435 APVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVE 494
P +P TP + PA + TP+T + TP +TP P P+
Sbjct: 266 TPAQTPMPERSWQ---TPAQTPARRISTPMTEEIKSWQTPLQTPAMYSSDYQAPKPEPIY 322
Query: 495 TPSVPA-EPTPTASPVQTSQP 514
T E P+ +S P
Sbjct: 323 TWEELLRERFPSDLFAISSLP 343
>gnl|CDD|184256 PRK13700, PRK13700, conjugal transfer protein TraD; Provisional.
Length = 732
Score = 31.9 bits (72), Expect = 1.1
Identities = 11/54 (20%), Positives = 14/54 (25%), Gaps = 1/54 (1%)
Query: 383 PTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAP 436
P VPEV V P P P + + + V P
Sbjct: 605 PDVPEVASGEDVTQAEQPQQPQQPQQPQQPQQPQQPVSPVI-NDKKSDAGVNVP 657
Score = 30.7 bits (69), Expect = 2.1
Identities = 11/40 (27%), Positives = 13/40 (32%), Gaps = 1/40 (2%)
Query: 477 TPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQTSQPCA 516
P PE E P P +P P Q QP +
Sbjct: 604 EPDVPEVASGEDV-TQAEQPQQPQQPQQPQQPQQPQQPVS 642
Score = 29.9 bits (67), Expect = 3.6
Identities = 9/45 (20%), Positives = 11/45 (24%), Gaps = 4/45 (8%)
Query: 462 TPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTA 506
P P E E P P + P P +P
Sbjct: 604 EPDVPE----VASGEDVTQAEQPQQPQQPQQPQQPQQPQQPVSPV 644
>gnl|CDD|146273 pfam03546, Treacle, Treacher Collins syndrome protein Treacle.
Length = 519
Score = 31.4 bits (70), Expect = 1.1
Identities = 37/150 (24%), Positives = 54/150 (36%), Gaps = 5/150 (3%)
Query: 365 AEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTP 424
E S ++ ES ++E + P + + + + V ++ P P APV
Sbjct: 302 DEDSSSSEESESEEEGTAPATARGQAKSVGKGLQVK----AASVPTKGPLGQGTAPVPPG 357
Query: 425 TETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPV-TPVASAPPTPAETPGAPEP 483
A + V A V + E + S A A V T V TP A A P P P A
Sbjct: 358 KTGPAVAQVKAEVQEDSESSEEESDSEEAAATPAQVKTSVKTPQAKANPAPTRAPPAKGA 417
Query: 484 VPSPAAPAPVETPSVPAEPTPTASPVQTSQ 513
+P + P PV+T Q
Sbjct: 418 ASAPGKVVAAAAQAKQRSPAKVKPPVRTLQ 447
Score = 30.6 bits (68), Expect = 2.1
Identities = 30/148 (20%), Positives = 47/148 (31%), Gaps = 3/148 (2%)
Query: 363 PAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPV-PAPSTPPVATPTETTPAPV 421
PAA ++ + + SS + E + A+ P P +P + P + +P
Sbjct: 10 PAATQAKAEKPEEDSESSSEDSDSEEEMPAAKNPPQAKPSGKSPQVKAASAPAKESPQKG 69
Query: 422 STPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAP 481
+ P A P AA + + E P A T T A A P + P
Sbjct: 70 APPVTPGKAGPAAAQAGEEEAKSSEEESDSEGETPTAA--TLTTSPAQAKPLGKNSQVRP 127
Query: 482 EPVPSPAAPAPVETPSVPAEPTPTASPV 509
+P P + A V
Sbjct: 128 ASTVTPGPSGKGANLPCPQKAGSAAVQV 155
>gnl|CDD|215397 PLN02744, PLN02744, dihydrolipoyllysine-residue acetyltransferase
component of pyruvate dehydrogenase complex.
Length = 539
Score = 31.4 bits (71), Expect = 1.2
Identities = 9/43 (20%), Positives = 17/43 (39%)
Query: 389 KPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAAS 431
KP++S P P+P P + +P ++ +A
Sbjct: 201 KPSSSAAPAAPKAKPSPPPPKEEEVEKPASSPEPKASKPSAPP 243
Score = 29.4 bits (66), Expect = 5.5
Identities = 12/44 (27%), Positives = 14/44 (31%), Gaps = 8/44 (18%)
Query: 462 TPVTPVASAPPTPAETPGAP--------EPVPSPAAPAPVETPS 497
P + A A P +P P P P A P PS
Sbjct: 201 KPSSSAAPAAPKAKPSPPPPKEEEVEKPASSPEPKASKPSAPPS 244
>gnl|CDD|179538 PRK03100, PRK03100, sec-independent translocase; Provisional.
Length = 136
Score = 30.0 bits (68), Expect = 1.2
Identities = 8/33 (24%), Positives = 10/33 (30%), Gaps = 1/33 (3%)
Query: 472 PTPAETPGAPEPVPSPAAPAPVETPSVPAEPTP 504
T P P + AP + P E P
Sbjct: 99 QTGNGRPTPSSPDAAGPAPPDATPLA-PGERPP 130
>gnl|CDD|224300 COG1382, GimC, Prefoldin, chaperonin cofactor [Posttranslational
modification, protein turnover, chaperones].
Length = 119
Score = 30.0 bits (68), Expect = 1.2
Identities = 17/67 (25%), Positives = 23/67 (34%), Gaps = 17/67 (25%)
Query: 238 PASLQQTYASAQQQHQQ---------HLKQRSYDITTVLDELGPLPPGWEQARTAEGQVY 288
P +Q A QQ QQ L+ + +I L+EL L + VY
Sbjct: 5 PPEVQAQLAQLQQLQQQLQKVILQKQQLEAQLKEIEKALEELEKLDE--------DAPVY 56
Query: 289 YLKGVLF 295
G L
Sbjct: 57 KKVGNLL 63
>gnl|CDD|218397 pfam05044, Prox1, Homeobox prospero-like protein (PROX1). The
homeobox gene Prox1 is expressed in a subpopulation of
endothelial cells that, after budding from veins, gives
rise to the mammalian lymphatic system. Prox1 has been
found to be an early specific marker for the developing
liver and pancreas in the mammalian foregut endoderm.
This family contains an atypical homeobox domain.
Length = 908
Score = 31.6 bits (71), Expect = 1.3
Identities = 31/155 (20%), Positives = 39/155 (25%), Gaps = 23/155 (14%)
Query: 362 PPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPV 421
P + ++ E+ E+ V K V T T TP V
Sbjct: 556 PFCMPQTPQPQDAPEQTEALSLVVTPKKKRHKV-----------------TDTRITPRTV 598
Query: 422 STPTETAAASPVAAPVPSPTTPVESPAASTPVEAPA--APVDTPVTPVASAPPTPAETPG 479
S A AA S +AS P P P+T P
Sbjct: 599 SRILALRDAVGPAAGTHHQPLHPSSLSASMGFHPPPFRHPFPLPLTVAIPNPSLHQSEVF 658
Query: 480 APEPVPSPAAPAPVETPSVPAEPTPTASPVQTSQP 514
P SP AP +P SP
Sbjct: 659 MGYPFQSPHLGAPSGSPP----GKDRDSPDLPRPT 689
>gnl|CDD|225766 COG3225, GldG, ABC-type uncharacterized transport system involved
in gliding motility, auxiliary component [Cell motility
and secretion].
Length = 538
Score = 31.3 bits (71), Expect = 1.3
Identities = 16/93 (17%), Positives = 28/93 (30%), Gaps = 6/93 (6%)
Query: 401 PVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPV 460
+ PS+ ++ P++ + + P PV T + A P P
Sbjct: 350 TLAWPSSLELSKGASVEFLPLNP--SSDLSGPFDLPVAL-TRTISLNANLVPSGKPE--E 404
Query: 461 DTPVTPVASAPPTPAETPGAPEPVPSPAAPAPV 493
P AP +P + S +P
Sbjct: 405 LAAKIP-GPAPSAFIASPENDQEGKSDRENSPA 436
Score = 29.0 bits (65), Expect = 7.7
Identities = 30/122 (24%), Positives = 42/122 (34%), Gaps = 10/122 (8%)
Query: 349 IWKKISQTIEPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTP 408
IW I P P P Q ES S E+ ASVE +P++P S P
Sbjct: 325 IWLLI--PKSPLVRPVDMPLQAGIESLTLAWPS---SLELSKGASVEFLPLNPSSDLSGP 379
Query: 409 ---PVATPTETTPAPVST-PTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPV 464
PVA T T + P+ P P+P+ + SP ++ +
Sbjct: 380 FDLPVAL-TRTISLNANLVPSGKPEELAAKIPGPAPSAFIASPENDQEGKSDRENSPAIL 438
Query: 465 TP 466
Sbjct: 439 VA 440
>gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex
non-fungal. The approx. 70 residue Med15 domain of the
ARC-Mediator co-activator is a three-helix bundle with
marked similarity to the KIX domain. The sterol
regulatory element binding protein (SREBP) family of
transcription activators use the ARC105 subunit to
activate target genes in the regulation of cholesterol
and fatty acid homeostasis. In addition, Med15 is a
critical transducer of gene activation signals that
control early metazoan development.
Length = 768
Score = 31.5 bits (71), Expect = 1.3
Identities = 27/100 (27%), Positives = 41/100 (41%), Gaps = 10/100 (10%)
Query: 380 SSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPS 439
SSP VP+V+ S+ P VP+P P P + + +P P P PS
Sbjct: 412 SSPSPVPQVQTNQSMPQPPQPSVPSPGGPGSQPPQSVSGGMIPSP-------PALMPSPS 464
Query: 440 PTTPVESPAASTP---VEAPAAPVDTPVTPVASAPPTPAE 476
P + T + +P P++TP ++P P E
Sbjct: 465 PQMSQSPASQRTIQQDMVSPGGPLNTPGQSSVNSPANPQE 504
>gnl|CDD|222783 PHA00350, PHA00350, putative assembly protein.
Length = 399
Score = 31.4 bits (71), Expect = 1.3
Identities = 12/52 (23%), Positives = 19/52 (36%), Gaps = 7/52 (13%)
Query: 349 IWKKISQTIEPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVS 400
+ + + K PA +QT S P +PA + +P PV
Sbjct: 244 FYALSGKVSDSVKTPAEHQAQTPS-------GVPTVSGPARPAQTGKPAPVL 288
Score = 29.4 bits (66), Expect = 4.3
Identities = 7/46 (15%), Positives = 15/46 (32%)
Query: 472 PTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQTSQPCAS 517
+ + A +P+ V P+ PA+ A + +
Sbjct: 251 VSDSVKTPAEHQAQTPSGVPTVSGPARPAQTGKPAPVLGPLGDGCT 296
>gnl|CDD|215036 PLN00034, PLN00034, mitogen-activated protein kinase kinase;
Provisional.
Length = 353
Score = 31.3 bits (71), Expect = 1.3
Identities = 19/77 (24%), Positives = 29/77 (37%), Gaps = 9/77 (11%)
Query: 389 KPAASVEPVPVSPVPAPSTP--PVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVES 446
KP VP+ +T P P T P P P+ +A P+P P S
Sbjct: 2 KPIQPPPGVPLPSTARHTTKSRPRRRPDLTLPLPQRDPS-------LAVPLPLPPPSSSS 54
Query: 447 PAASTPVEAPAAPVDTP 463
++S+ + +AP
Sbjct: 55 SSSSSSSASGSAPSAAK 71
>gnl|CDD|165564 PHA03309, PHA03309, transcriptional regulator ICP4; Provisional.
Length = 2033
Score = 31.7 bits (71), Expect = 1.3
Identities = 42/177 (23%), Positives = 58/177 (32%), Gaps = 26/177 (14%)
Query: 364 AAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAP-----------STPPVAT 412
A S ++S S+ SSP + P S+ P P P AP P A
Sbjct: 1813 AGRSSSSSSSSSSSSSSSPSSRPSRSATPSLSPSPSPPRRAPVDRSRSGRRRERDRPSAN 1872
Query: 413 PTETTP-------------APVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAP 459
P P AP P P+ +P++ P+ S P ++
Sbjct: 1873 PFRWAPRQRSRADHSPDGTAPGDAPLNLEDGPGRGRPIWTPSSATTLPSRSGPEDSVDET 1932
Query: 460 VDTPVTPVASAPPTPAETPGAPEPVPS--PAAPAPVETPSVPAEPTPTASPVQTSQP 514
P A P+P ET A + S P P S PA + A + QP
Sbjct: 1933 ETEDSAPPARLAPSPLETSRAEDSEDSEYPEYSNPRLGKSPPALKSREARRPSSKQP 1989
>gnl|CDD|218549 pfam05308, Mito_fiss_reg, Mitochondrial fission regulator. In
eukaryotes, this family of proteins induces
mitochondrial fission.
Length = 248
Score = 30.9 bits (70), Expect = 1.3
Identities = 10/74 (13%), Positives = 22/74 (29%)
Query: 431 SPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAP 490
+ +A V + + + + T P++ P P P P P P
Sbjct: 136 AQIAKIVAAQEQSNSTTSDLLSSDESVPSSSTTSFPISPPTEEPVLEVPPPPPPPPPPPP 195
Query: 491 APVETPSVPAEPTP 504
++ + +
Sbjct: 196 PSLQQSTSAIDLIK 209
>gnl|CDD|217539 pfam03407, Nucleotid_trans, Nucleotide-diphospho-sugar transferase.
Proteins in this family have been been predicted to be
nucleotide-diphospho-sugar transferases.
Length = 208
Score = 30.8 bits (70), Expect = 1.3
Identities = 12/59 (20%), Positives = 21/59 (35%), Gaps = 13/59 (22%)
Query: 102 VFLDADVLIVQNCDELF-----------DREELSAAPDAGWPDCFNSGVFVFKPSESTY 149
+F D DV+ ++N L D + + A N G F +P+ +
Sbjct: 70 IFSDVDVVWLRNPFPLLYLPDADIIISSDNYDGTTADGLKNW--LNGGFFYVRPTNRSI 126
>gnl|CDD|221480 pfam12238, MSA-2c, Merozoite surface antigen 2c. This family of
proteins is found in eukaryotes. Proteins in this family
are typically between 263 and 318 amino acids in length.
There is a conserved SFT sequence motif. MSA-2 is a
plasma membrane glycoprotein which can be found in
Babesia bovis species.
Length = 201
Score = 30.5 bits (69), Expect = 1.4
Identities = 19/60 (31%), Positives = 22/60 (36%), Gaps = 11/60 (18%)
Query: 438 PSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPS 497
+P S + T P+ D TP SAPPTP PE P ETP
Sbjct: 139 AEYYSPKHSSSQGTSTTRPS---DGSATPNTSAPPTPGNPAAQPEK--------PAETPK 187
Score = 28.6 bits (64), Expect = 6.8
Identities = 13/56 (23%), Positives = 18/56 (32%), Gaps = 1/56 (1%)
Query: 393 SVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPA 448
V P + T T +TP +A +P P P P E+P
Sbjct: 133 LVVKAPAEYYSPKHSSSQGTSTTRPSDGSATPNTSAPPTP-GNPAAQPEKPAETPK 187
>gnl|CDD|190502 pfam03014, SP2, Structural protein 2. This family represents
structural protein 2 of the hepatitis E virus. The high
basic amino acid content of this protein has lead to the
suggestion of a role in viral genomic RNA encapsidation.
Length = 619
Score = 31.2 bits (70), Expect = 1.5
Identities = 27/82 (32%), Positives = 35/82 (42%), Gaps = 6/82 (7%)
Query: 430 ASPVAAPVPSPTTPVESPAASTPVEAPAAP-VDTPVTPVASAPPTPAETP-GAPEPVPSP 487
+ P A P PT P AA ++ A P P+ SA ++ P GAP +P
Sbjct: 8 SQPFALPYIHPTNPF---AADVFSQSGAGGRRRQPRRPLGSAWRDQSQRPEGAPRRRSTP 64
Query: 488 AAPAPVETPSVPAEPTPTASPV 509
A AP+ T VPA T V
Sbjct: 65 AGAAPL-TAVVPAADTRPVPDV 85
>gnl|CDD|184900 PRK14907, rplD, 50S ribosomal protein L4; Provisional.
Length = 295
Score = 31.1 bits (70), Expect = 1.5
Identities = 16/81 (19%), Positives = 24/81 (29%), Gaps = 11/81 (13%)
Query: 354 SQTIEPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATP 413
+T E KP A + + + + KK + + K AA V
Sbjct: 10 KKTTEEKKPAAKKATTSKETAKTKKTAKTTSTKAAKKAAKV-----------KKTKSVKT 58
Query: 414 TETTPAPVSTPTETAAASPVA 434
T TE+ VA
Sbjct: 59 TTKKVTVKFEKTESVKKESVA 79
>gnl|CDD|219094 pfam06583, Neogenin_C, Neogenin C-terminus. This family represents
the C-terminus of eukaryotic neogenin precursor
proteins, which contains several potential
phosphorylation sites. Neogenin is a member of the N-CAM
family of cell adhesion molecules (and therefore
contains multiple copies of pfam00047 and pfam00041) and
is closely related to the DCC tumour suppressor gene
product - these proteins may play an integral role in
regulating differentiation programmes and/or cell
migration events within many adult and embryonic
tissues.
Length = 295
Score = 31.1 bits (70), Expect = 1.5
Identities = 22/99 (22%), Positives = 34/99 (34%), Gaps = 3/99 (3%)
Query: 400 SPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAP 459
TP P P + +S A PS + P + P+++ A P
Sbjct: 139 RLYQHGDRAESVESVRQTPEPPYLPAAQSESSNAAEEAPSRSIPTAHVRPTHPLKSFAVP 198
Query: 460 VDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSV 498
P + P P+ TP + P+ V+T SV
Sbjct: 199 A-LPASMSTIEPKLPS-TPLLTQQGPTLPKH-SVKTASV 234
>gnl|CDD|237512 PRK13800, PRK13800, putative oxidoreductase/HEAT repeat-containing
protein; Provisional.
Length = 897
Score = 31.4 bits (71), Expect = 1.5
Identities = 16/62 (25%), Positives = 20/62 (32%)
Query: 433 VAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAP 492
+ PV PV PV+ PV P AP AP P P +P
Sbjct: 553 LKRPVAPYFVPVPELDDLPPVDRTVVPVGQPPLHGGRAPAEGVSRAAAPATAPEPPSPRI 612
Query: 493 VE 494
+
Sbjct: 613 LA 614
>gnl|CDD|104071 PRK09629, PRK09629, bifunctional thiosulfate
sulfurtransferase/phosphatidylserine decarboxylase;
Provisional.
Length = 610
Score = 31.2 bits (70), Expect = 1.5
Identities = 20/58 (34%), Positives = 24/58 (41%), Gaps = 10/58 (17%)
Query: 456 PAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQTSQ 513
P PV+ P A P E +P +PA PAP ET EP P + SQ
Sbjct: 265 PDTPVEVPTVAAA-----PIEAVEVAQPA-APAQPAPAET----VEPVRATEPSKGSQ 312
Score = 31.2 bits (70), Expect = 1.7
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
Query: 471 PPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTP--TASPVQTSQP 514
P TP E P +P V P+ PA+P P T PV+ ++P
Sbjct: 265 PDTPVEVP---TVAAAPIEAVEVAQPAAPAQPAPAETVEPVRATEP 307
Score = 28.5 bits (63), Expect = 8.9
Identities = 19/45 (42%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Query: 440 PTTPVESP-AASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEP 483
P TPVE P A+ P+EA V P P AP E A EP
Sbjct: 265 PDTPVEVPTVAAAPIEA--VEVAQPAAPAQPAPAETVEPVRATEP 307
>gnl|CDD|220956 pfam11051, Mannosyl_trans3, Mannosyltransferase putative. This
family is conserved in fungi. Several members are
annotated as being alpha-1,3-mannosyltransferase but
this could not be confirmed.
Length = 263
Score = 30.6 bits (70), Expect = 1.6
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 102 VFLDADVLIVQNCDELFDREE 122
+ LDAD + + N D LF+ E
Sbjct: 94 LLLDADNVPLVNPDYLFESEP 114
>gnl|CDD|236851 PRK11114, PRK11114, cellulose synthase regulator protein;
Provisional.
Length = 756
Score = 31.1 bits (71), Expect = 1.7
Identities = 15/65 (23%), Positives = 22/65 (33%), Gaps = 2/65 (3%)
Query: 407 TPPVATPTETTPAPVSTPTETAAASPVAAPV--PSPTTPVESPAASTPVEAPAAPVDTPV 464
+ + P AA+P P+ + +PAA+ PV A AAP
Sbjct: 2 KRKLTWLCALALGMSAFPAFATAAAPATQPLANAAGQVMPAAPAAAAPVVAQAAPSRDVT 61
Query: 465 TPVAS 469
A
Sbjct: 62 LTFAQ 66
Score = 29.1 bits (66), Expect = 6.6
Identities = 12/56 (21%), Positives = 19/56 (33%), Gaps = 1/56 (1%)
Query: 389 KPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPV 444
+ + + + P+ A P T P + AA AAPV + P
Sbjct: 3 RKLTWLCALALGMSAFPAFATAAAPA-TQPLANAAGQVMPAAPAAAAPVVAQAAPS 57
>gnl|CDD|233044 TIGR00600, rad2, DNA excision repair protein (rad2). All proteins
in this family for which functions are known are flap
endonucleases that generate the 3' incision next to DNA
damage as part of nucleotide excision repair. This
family is related to many other flap endonuclease
families including the fen1 family. This family is based
on the phylogenomic analysis of JA Eisen (1999, Ph.D.
Thesis, Stanford University) [DNA metabolism, DNA
replication, recombination, and repair].
Length = 1034
Score = 31.0 bits (70), Expect = 1.7
Identities = 28/165 (16%), Positives = 51/165 (30%), Gaps = 17/165 (10%)
Query: 357 IEPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTET 416
S E +T + E S VP+ + + SP+P+ T +E
Sbjct: 456 QLSSVNSKPEAVASTKIAREVTSSGHEAVPKAVQSLLLGATNDSPIPSEFTIL-DRKSEL 514
Query: 417 TPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVD-----TPVTPV--AS 469
+ P ++ + P E + + +P+ S
Sbjct: 515 SIERTVKPV-SSEFGLPSQREDKLAIPTEGTQNLQGISDHPEQFEFQNELSPLETKNNES 573
Query: 470 APPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQTSQP 514
+ AET G+P P + +VP+E +T+ P
Sbjct: 574 NLSSDAETEGSPNPEMPSWSSV-----TVPSE---ALDNYETTNP 610
>gnl|CDD|224346 COG1429, CobN, Cobalamin biosynthesis protein CobN and related
Mg-chelatases [Coenzyme metabolism].
Length = 1388
Score = 31.2 bits (71), Expect = 1.8
Identities = 18/105 (17%), Positives = 30/105 (28%), Gaps = 7/105 (6%)
Query: 380 SSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPS 439
S P VPE+ AA+ + AP++ P VST + ++A+ + S
Sbjct: 1270 VSVPGVPELVEAATYAATRYA-AFAPASATPGAPESVGTTAVSTASSASSATVTGSDAGS 1328
Query: 440 PTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPV 484
P A V + +
Sbjct: 1329 GADSTG------PSLGAAGSVTGAGEGYEMTKEAVSGSESTGMSF 1367
Score = 29.3 bits (66), Expect = 6.2
Identities = 16/75 (21%), Positives = 22/75 (29%), Gaps = 9/75 (12%)
Query: 357 IEPSKPPAAEPSQTTSESTEKKESSPPTVPEVKP--AASVEPVPVSPVPAPS-------T 407
+ P A E TT+ ST SS A S P + T
Sbjct: 1294 PASATPGAPESVGTTAVSTASSASSATVTGSDAGSGADSTGPSLGAAGSVTGAGEGYEMT 1353
Query: 408 PPVATPTETTPAPVS 422
+ +E+T S
Sbjct: 1354 KEAVSGSESTGMSFS 1368
>gnl|CDD|215145 PLN02258, PLN02258, 9-cis-epoxycarotenoid dioxygenase NCED.
Length = 590
Score = 30.8 bits (70), Expect = 2.0
Identities = 30/117 (25%), Positives = 45/117 (38%), Gaps = 11/117 (9%)
Query: 406 STPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVES--PAASTPVEAPAAPVDTP 463
S+ T + A S+ + ++ +SP ++ P P S TP P + +P
Sbjct: 1 SSSSNPTSRSQSHAS-SSSSSSSQSSPPSSTSPRPRRRKPSASSLLHTPSILPLPKLSSP 59
Query: 464 VTPVASAPPTPAETPGAPEPVPSPAAPA--PVETPSVP----AEPTP-TASP-VQTS 512
P + PP P+ AA A VE+ V P P TA P VQ +
Sbjct: 60 SPPSVTLPPAATTQTPQLNPLQRAAAAALDAVESALVSHLERQHPLPKTADPAVQIA 116
>gnl|CDD|184281 PRK13729, PRK13729, conjugal transfer pilus assembly protein TraB;
Provisional.
Length = 475
Score = 30.6 bits (69), Expect = 2.1
Identities = 13/45 (28%), Positives = 14/45 (31%), Gaps = 1/45 (2%)
Query: 468 ASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQTS 512
A T EPVP A P TP + P Q S
Sbjct: 120 VKALGANPVTAT-GEPVPQMPASPPGPEGEPQPGNTPVSFPPQGS 163
Score = 29.0 bits (65), Expect = 6.7
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 453 VEAPAAPVDTPV-TPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTP 504
V+A A T PV P +P G P+P +P + P + +VP PT
Sbjct: 120 VKALGANPVTATGEPVPQMPASPPGPEGEPQPGNTPVSFPPQGSVAVPP-PTA 171
Score = 28.6 bits (64), Expect = 8.4
Identities = 19/75 (25%), Positives = 23/75 (30%)
Query: 369 QTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETA 428
EK + E A PV + P P P E P P +TP
Sbjct: 100 GDDQRRIEKLGQDNAALAEQVKALGANPVTATGEPVPQMPASPPGPEGEPQPGNTPVSFP 159
Query: 429 AASPVAAPVPSPTTP 443
VA P P+ P
Sbjct: 160 PQGSVAVPPPTAFYP 174
Score = 28.6 bits (64), Expect = 9.7
Identities = 18/83 (21%), Positives = 24/83 (28%), Gaps = 9/83 (10%)
Query: 433 VAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAP 492
V A +P T P P P + + P P VP P A P
Sbjct: 120 VKALGANPVTATGEPVPQMPASPPGPEGEPQPGNTPVSFP-----PQGSVAVPPPTAFYP 174
Query: 493 ----VETPSVPAEPTPTASPVQT 511
P V + P + +Q
Sbjct: 175 GNGVTPPPQVTYQSVPVPNRIQR 197
>gnl|CDD|225499 COG2948, VirB10, Type IV secretory pathway, VirB10 components
[Intracellular trafficking and secretion].
Length = 360
Score = 30.5 bits (69), Expect = 2.3
Identities = 21/100 (21%), Positives = 26/100 (26%), Gaps = 7/100 (7%)
Query: 384 TVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTP 443
P +P P+P PV + A AA S +
Sbjct: 64 RGTPPLPPLPDDPPLPPPLPVDLGAPVLPDQQVEEAKDQPRRLRAA----ELAATSG-SR 118
Query: 444 VESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEP 483
VES A V A A + A P A E
Sbjct: 119 VESDRAVGRVRAALA--NAAPAAAAPPPAGQPSGQSAKED 156
Score = 28.2 bits (63), Expect = 10.0
Identities = 8/68 (11%), Positives = 13/68 (19%)
Query: 439 SPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSV 498
+ +T + P+ P+ PP P P P
Sbjct: 44 IALQGEKKRINNTQPPSNVERGTPPLPPLPDDPPLPPPLPVDLGAPVLPDQQVEEAKDQP 103
Query: 499 PAEPTPTA 506
Sbjct: 104 RRLRAAEL 111
>gnl|CDD|235307 PRK04537, PRK04537, ATP-dependent RNA helicase RhlB; Provisional.
Length = 572
Score = 30.7 bits (69), Expect = 2.4
Identities = 27/93 (29%), Positives = 36/93 (38%), Gaps = 13/93 (13%)
Query: 382 PPTVPEVK-PAASVEPVPVSPVPAPSTPP----VATPTETTPAPV-----STPTETAAAS 431
P P V+ A + +PV A + VA E P P E A
Sbjct: 465 PRRKPRVEGEADAAAAGAETPVVAAAAAQAPGVVAADGERAPRKRRRRRNGRPVE--GAE 522
Query: 432 PVAAPVPSPTTPVESP-AASTPVEAPAAPVDTP 463
PV+ PVP+P P + +TPV A A +P
Sbjct: 523 PVSTPVPAPAAPRKPTQVVATPVRAAAKSSGSP 555
>gnl|CDD|216399 pfam01265, Cyto_heme_lyase, Cytochrome c/c1 heme lyase.
Length = 239
Score = 30.0 bits (68), Expect = 2.4
Identities = 21/80 (26%), Positives = 27/80 (33%)
Query: 422 STPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAP 481
S+PTE A AS + P P A AP + PV P
Sbjct: 6 SSPTEPAEASSASPPPKCPVDHKTRSAWLKQAPAPPSSAPPSSCPVDHKSDLSDLNPLNN 65
Query: 482 EPVPSPAAPAPVETPSVPAE 501
P P +PAP + + E
Sbjct: 66 MPPPPNQSPAPDQPVDLSTE 85
Score = 28.8 bits (65), Expect = 5.4
Identities = 13/72 (18%), Positives = 19/72 (26%)
Query: 434 AAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPV 493
++P SP PV+ P + P+ P + S P
Sbjct: 6 SSPTEPAEASSASPPPKCPVDHKTRSAWLKQAPAPPSSAPPSSCPVDHKSDLSDLNPLNN 65
Query: 494 ETPSVPAEPTPT 505
P P P
Sbjct: 66 MPPPPNQSPAPD 77
Score = 28.5 bits (64), Expect = 6.9
Identities = 16/77 (20%), Positives = 24/77 (31%), Gaps = 3/77 (3%)
Query: 439 SPTTPVESPAASTPVEAPAAPVDTPVTPVA-SAPPTPAETPGAPE-PV-PSPAAPAPVET 495
++P E AS+ P PVD P P + PV
Sbjct: 4 FWSSPTEPAEASSASPPPKCPVDHKTRSAWLKQAPAPPSSAPPSSCPVDHKSDLSDLNPL 63
Query: 496 PSVPAEPTPTASPVQTS 512
++P P + +P Q
Sbjct: 64 NNMPPPPNQSPAPDQPV 80
>gnl|CDD|240420 PTZ00441, PTZ00441, sporozoite surface protein 2 (SSP2);
Provisional.
Length = 576
Score = 30.3 bits (68), Expect = 2.6
Identities = 33/132 (25%), Positives = 40/132 (30%), Gaps = 7/132 (5%)
Query: 357 IEPSKPPAAEPSQTTSESTEKKESSPP-TVPEVKPAASVEPVPVSPVPAPSTPPVATPTE 415
+EP P P T E + + VP V P PVP P+ P E
Sbjct: 284 VEPEPLPVPAPVPPTPEDDNPRPTDDEFAVPNFNEGLDVPDNPQDPVPPPNEGKDGNPNE 343
Query: 416 ---TTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTP--VEAPAAPVDTPVTPVASA 470
P P E+ P VP + S P P P P P S
Sbjct: 344 ENLFPPGDDEVPDESNVP-PNPPNVPGGSNSEFSSDVENPPNPPNPDIPEQEPNIPEDSN 402
Query: 471 PPTPAETPGAPE 482
P + P PE
Sbjct: 403 KEVPEDVPMEPE 414
Score = 29.5 bits (66), Expect = 4.4
Identities = 30/126 (23%), Positives = 38/126 (30%), Gaps = 23/126 (18%)
Query: 394 VEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASP-----VAAPVPSPTTPVESPA 448
VEP P+ PVPAP P TP + P P T E A + V P P
Sbjct: 284 VEPEPL-PVPAPVPP---TPEDDNPRP--TDDEFAVPNFNEGLDVPDNPQDPVPPPNEGK 337
Query: 449 ASTPVE-------APAAPVDTPVTPVASAPPTPA-----ETPGAPEPVPSPAAPAPVETP 496
P E P ++ V P P + P P+P P
Sbjct: 338 DGNPNEENLFPPGDDEVPDESNVPPNPPNVPGGSNSEFSSDVENPPNPPNPDIPEQEPNI 397
Query: 497 SVPAEP 502
+
Sbjct: 398 PEDSNK 403
>gnl|CDD|218440 pfam05110, AF-4, AF-4 proto-oncoprotein. This family consists of
AF4 (Proto-oncogene AF4) and FMR2 (Fragile X E mental
retardation syndrome) nuclear proteins. These proteins
have been linked to human diseases such as acute
lymphoblastic leukaemia and mental retardation. The
family also contains a Drosophila AF4 protein homologue
Lilliputian which contains an AT-hook domain.
Lilliputian represents a novel pair-rule gene that acts
in cytoskeleton regulation, segmentation and
morphogenesis in Drosophila.
Length = 1154
Score = 30.7 bits (69), Expect = 2.6
Identities = 25/166 (15%), Positives = 40/166 (24%), Gaps = 13/166 (7%)
Query: 357 IEPSKPPAAEPSQTTSESTE--KKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPT 414
+ P K AE + + +KE + S EP P S P
Sbjct: 454 VNPHKVSPAESVSSNPPIKQPMEKEGKVKSSGSQYHPESKEPPPKS-SSKEKRRPRTAQK 512
Query: 415 ETTPAPVSTPTETAAASPVA-------APVPSPTTPVESPAASTPVEAPAAPVDTPVTPV 467
+ + +P P E+ + +
Sbjct: 513 GPESGRGKQKSPAQSEAPPQRRTVGKKQPKKPEKASAGDERTGLRPESEPGTLPYGSSVQ 572
Query: 468 ASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQTSQ 513
A T G+ +P P P + AE SP +
Sbjct: 573 TPPDRPKAATKGSRKPSPR---KEPKSSVPPAAEKRKYKSPSKIVP 615
Score = 29.5 bits (66), Expect = 5.3
Identities = 35/158 (22%), Positives = 54/158 (34%), Gaps = 15/158 (9%)
Query: 368 SQTTSESTEKKESSPPTV--PEVKPAAS-----------VEPVPVSPVPAPSTPPVATPT 414
S++ S S++ +E+ PP PE +P ++ V P VSP + S+ P
Sbjct: 415 SESESSSSDSEENEPPRTASPEPEPPSTNKWQLDNWLNKVNPHKVSPAESVSSNPPIKQP 474
Query: 415 ETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTP 474
V + P S + P T + P + +P S P
Sbjct: 475 MEKEGKVKSSGSQYHPESKEPPPKSSSKEKRRP--RTAQKGPESGRGKQKSPAQSEAPPQ 532
Query: 475 AETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQTS 512
T G +P A A E + E P P +S
Sbjct: 533 RRTVGKKQPKKPEKASAGDERTGLRPESEPGTLPYGSS 570
>gnl|CDD|233927 TIGR02557, HpaP, type III secretion protein HpaP. This family of
genes is always found in type III secretion operons,
althought its function in the processes of secretion and
virulence is unclear. Hpa stands for Hrp-associated
gene, where Hrp stands for hypersensitivity response and
virulence.
Length = 201
Score = 29.9 bits (67), Expect = 2.6
Identities = 19/81 (23%), Positives = 26/81 (32%), Gaps = 4/81 (4%)
Query: 403 PAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDT 462
PAP+ P T P++ A + P P P P + P A
Sbjct: 10 PAPADPARPARRRT---PLAQLRRRDALAYAPPPRPEPPPPCDE-DRPEPRADTRASDPP 65
Query: 463 PVTPVASAPPTPAETPGAPEP 483
P P + P P + P A
Sbjct: 66 PEAPTDADPAQPPDDPDASAH 86
Score = 29.1 bits (65), Expect = 4.3
Identities = 19/100 (19%), Positives = 27/100 (27%), Gaps = 4/100 (4%)
Query: 363 PAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVS 422
A P+ ++ +P + A + P P P P P T A
Sbjct: 6 RLARPAPADPARPARR-RTPLAQLRRRDALAYAPPPRPEPPPPCDEDRPEPRADTRASDP 64
Query: 423 TPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDT 462
P A P P + A+ A A V
Sbjct: 65 PPEAPTDADP---AQPPDDPDASAHTAAIASGAAGARVVR 101
>gnl|CDD|218108 pfam04487, CITED, CITED. CITED, CBP/p300-interacting
transactivator with ED-rich tail, are characterized by a
conserved 32-amino acid sequence at the C-terminus.
CITED proteins do not bind DNA directly and are thought
to function as transcriptional co-activators.
Length = 206
Score = 29.9 bits (67), Expect = 2.6
Identities = 16/116 (13%), Positives = 25/116 (21%), Gaps = 4/116 (3%)
Query: 391 AASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAAS 450
+ P P P+ + PS
Sbjct: 37 DLRALMGTLLHYPGGGMDASGRPRSAMSGPMGGGHPHQSMPAYMMFNPSSKPQPFMLVPG 96
Query: 451 TPVEAPA--APVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTP 504
+ A ++T A AP G + P P + +PA P
Sbjct: 97 PQLMASMQLQKLNTQYQGHAGAPAGHPGGGGPQQFRPGAGQPPGM--QHMPAPALP 150
>gnl|CDD|234012 TIGR02784, addA_alphas, double-strand break repair helicase AddA,
alphaproteobacterial type. AddAB, also called RexAB,
substitutes for RecBCD in several bacterial lineages.
These DNA recombination proteins act before synapse and
are particularly important for DNA repair of
double-stranded breaks by homologous recombination. The
term AddAB is used broadly, with AddA homologous between
the alphaproteobacteria (as modeled here) and the
Firmicutes, while the partner AddB proteins show no
strong homology across the two groups of species [DNA
metabolism, DNA replication, recombination, and repair].
Length = 1135
Score = 30.4 bits (69), Expect = 2.6
Identities = 16/84 (19%), Positives = 20/84 (23%), Gaps = 2/84 (2%)
Query: 425 TETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEP- 483
A P PV+ T A P P EP
Sbjct: 886 AAAGIAWQEPHPAQGKAEWRLRFTRRDWDP-VGLPVEAAQTDTLEALPDWLRAPAPAEPA 944
Query: 484 VPSPAAPAPVETPSVPAEPTPTAS 507
+P P AP+ + A P
Sbjct: 945 LPRPLAPSGLGGAIDSALPGEAVR 968
>gnl|CDD|233777 TIGR02205, septum_zipA, cell division protein ZipA. This model
represents the full length of bacterial cell division
protein ZipA. The N-terminal hydrophobic stretch is an
uncleaved signal-anchor sequence. This is followed by an
unconserved, variable length, low complexity region, and
then a conserved C-terminal region of about 140 amino
acids (see pfam04354) that interacts with the
tubulin-like cell division protein FtsZ [Cellular
processes, Cell division].
Length = 284
Score = 29.9 bits (67), Expect = 2.7
Identities = 17/87 (19%), Positives = 25/87 (28%), Gaps = 6/87 (6%)
Query: 375 TEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVA 434
E+ S + + SV+ S P+ P A + A + P A
Sbjct: 75 REQHLPSISELVAYQRDKSVDDEEASIPMQPTQQQYDMPQPNNVAQQTVEPRVAKSLPEA 134
Query: 435 APVPSPTTPVESPAASTPVEAPAAPVD 461
+P V V AP D
Sbjct: 135 SPQEE---EVGKNL---EVTAPPKQKD 155
>gnl|CDD|165513 PHA03255, PHA03255, BDLF3; Provisional.
Length = 234
Score = 29.9 bits (66), Expect = 2.8
Identities = 27/132 (20%), Positives = 38/132 (28%), Gaps = 2/132 (1%)
Query: 354 SQTIEPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPA--ASVEPVPVSPVPAPSTPPVA 411
T + P+A T +T S+P T + +V + P P+T +
Sbjct: 39 GTTAVTTPSPSASGPSTNQSTTLTTTSAPITTTAILSTNTTTVTSTGTTVTPVPTTSNAS 98
Query: 412 TPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAP 471
T TT T T A + + V S T S S A P
Sbjct: 99 TINVTTKVTAQNITATEAGTGTSTGVTSNVTTRSSSTTSATTRITNATTLAPTLSSKGTS 158
Query: 472 PTPAETPGAPEP 483
T P
Sbjct: 159 NATKTTAELPTV 170
>gnl|CDD|132268 TIGR03224, benzo_boxA, benzoyl-CoA oxygenase/reductase, BoxA
protein. Members of this protein family are BoxA, the A
component of the BoxAB benzoyl-CoA oxygenase/reductase.
This oxygen-requiring enzyme acts in an aerobic pathway
of benzoate catabolism via coenzyme A ligation. BoxA is
a homodimeric iron-sulphur-flavoprotein and acts as an
NADPH-dependent reductase for BoxB [Energy metabolism,
Other].
Length = 411
Score = 30.2 bits (68), Expect = 2.8
Identities = 15/65 (23%), Positives = 19/65 (29%), Gaps = 1/65 (1%)
Query: 420 PVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPG 479
P AAA P AA P + S+ V+ A SA G
Sbjct: 80 PEEVTLPEAAAEPAAAAGQDDEEPSR-GSKSSGVQEVEAAQHGSTRAPWSAAHPYVNLYG 138
Query: 480 APEPV 484
P+
Sbjct: 139 VKAPI 143
>gnl|CDD|182338 PRK10255, PRK10255, PTS system N-acetyl glucosamine specific
transporter subunits IIABC; Provisional.
Length = 648
Score = 30.2 bits (68), Expect = 3.0
Identities = 22/80 (27%), Positives = 30/80 (37%), Gaps = 12/80 (15%)
Query: 386 PEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVS--------TPTETAAASPVA--- 434
P +A P +PV P P A +P++ P E A+ V
Sbjct: 470 PVAAASAEATPATAAPVAKPQAVPNAVSIAELVSPITGDVVALDQVPDEAFASKAVGDGV 529
Query: 435 APVPSPTTPVESPAASTPVE 454
A P+ V SPAA T V+
Sbjct: 530 AVKPTDKI-VVSPAAGTIVK 548
>gnl|CDD|113514 pfam04747, DUF612, Protein of unknown function, DUF612. This
family includes several uncharacterized proteins from
Caenorhabditis elegans.
Length = 517
Score = 30.0 bits (66), Expect = 3.3
Identities = 37/144 (25%), Positives = 51/144 (35%), Gaps = 16/144 (11%)
Query: 353 ISQTIEPSKPPAAEPSQTTSESTEK-KESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVA 411
+ Q +E K EP Q + +K K++ + E PAAS PV PV + P
Sbjct: 234 VEQVVEQPKVVTEEPHQQAAPQEKKNKKNKRKSESENVPAAS--ETPVEPVVETTPPASE 291
Query: 412 TPTETTPAPVSTPTETAAASPVAAPVPSPTTPV-------------ESPAASTPVEAPAA 458
+ + +E PV A P P + P E PAA
Sbjct: 292 NQKKNKKDKKKSESEKVVEEPVQAEAPKSKKPTADDNMDFLDFVTAKEEPKDEPAETPAA 351
Query: 459 PVDTPVTPVASAPPTPAETPGAPE 482
PV+ V V + TP A E
Sbjct: 352 PVEEVVENVVENVVEKSTTPPATE 375
>gnl|CDD|114603 pfam05887, Trypan_PARP, Procyclic acidic repetitive protein (PARP).
This family consists of several Trypanosoma brucei
procyclic acidic repetitive protein (PARP) like
sequences. The procyclic acidic repetitive protein
(parp) genes of Trypanosoma brucei encode a small family
of abundant surface proteins whose expression is
restricted to the procyclic form of the parasite. They
are found at two unlinked loci, parpA and parpB;
transcription of both loci is developmentally regulated.
Length = 145
Score = 29.2 bits (64), Expect = 3.3
Identities = 26/83 (31%), Positives = 32/83 (38%), Gaps = 6/83 (7%)
Query: 358 EPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPV-----SPVPAPSTPPVAT 412
EP + EP + E E +E PE + EP P P P P P
Sbjct: 63 EPEEEEEPEPEEEGEEEPEPEEEGEEE-PEPEETGEEEPEPEPEPEPEPEPEPEPEPEPE 121
Query: 413 PTETTPAPVSTPTETAAASPVAA 435
P T V+ P AAA+ VAA
Sbjct: 122 PGAATLKSVALPFAIAAAALVAA 144
>gnl|CDD|225657 COG3115, ZipA, Cell division protein [Cell division and chromosome
partitioning].
Length = 324
Score = 29.8 bits (67), Expect = 3.3
Identities = 23/134 (17%), Positives = 29/134 (21%), Gaps = 3/134 (2%)
Query: 366 EPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPT 425
+ E P + E P P + P
Sbjct: 49 DDPYDEVADDEGVGEVRVVRKNEAPQFTQEHEAARQSPQHQYQPEYASAQIKIPVPQPPQ 108
Query: 426 ETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVP 485
+ + P+ A PV AP PV A P P PE
Sbjct: 109 ISDPPAHPQPTQPALDQEQPPEEARQPVLPQEAPAPQPVHSAAPQPAVQTVQPAVPEQQV 168
Query: 486 SP---AAPAPVETP 496
P PAP
Sbjct: 169 QPEEVVEPAPEVKR 182
Score = 29.8 bits (67), Expect = 3.8
Identities = 14/81 (17%), Positives = 17/81 (20%), Gaps = 1/81 (1%)
Query: 435 APVPSPTTPVESPAASTPV-EAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPV 493
P T E+ S P PV P P+ P
Sbjct: 70 NEAPQFTQEHEAARQSPQHQYQPEYASAQIKIPVPQPPQISDPPAHPQPTQPALDQEQPP 129
Query: 494 ETPSVPAEPTPTASPVQTSQP 514
E P P +P
Sbjct: 130 EEARQPVLPQEAPAPQPVHSA 150
Score = 28.3 bits (63), Expect = 9.6
Identities = 7/63 (11%), Positives = 14/63 (22%)
Query: 355 QTIEPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPT 414
+P + + + + S+ P +V V P P
Sbjct: 124 DQEQPPEEARQPVLPQEAPAPQPVHSAAPQPAVQTVQPAVPEQQVQPEEVVEPAPEVKRP 183
Query: 415 ETT 417
Sbjct: 184 PRK 186
>gnl|CDD|217503 pfam03344, Daxx, Daxx Family. The Daxx protein (also known as the
Fas-binding protein) is thought to play a role in
apoptosis, but precise role played by Daxx remains to be
determined. Daxx forms a complex with Axin.
Length = 715
Score = 30.3 bits (68), Expect = 3.4
Identities = 39/176 (22%), Positives = 53/176 (30%), Gaps = 17/176 (9%)
Query: 354 SQTIEPSKPPAAEPSQTTSESTEK--KESSPPT--VPEVKPAASVEPVPVSPVPAPSTPP 409
S EP +P + + ES E+ E SP + A VE S P PP
Sbjct: 531 SPQEEPLQPESMDAESVGEESDEELLAEESPLSSHTELEGVATPVETKISSSRKLPP-PP 589
Query: 410 VATPTETTPAPVSTPTETAAASPVAAPVPSPTTPV--------ESPAASTPVEAPAAPVD 461
V+T E A V++ T SP P P E + +
Sbjct: 590 VSTSLENDSATVTSTTRNGNVSPHT---PQDEQPPSGRKRKRKEEVESEPLGNQYLRHHN 646
Query: 462 TPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQTSQPCAS 517
AP P T +P S P + TP P + A+
Sbjct: 647 GSEKDGLPAPMDPV-TSCSPVADSSTRVDTPSHELVTSSPQTPGDPPKKNKVNVAT 701
>gnl|CDD|191251 pfam05283, MGC-24, Multi-glycosylated core protein 24 (MGC-24).
This family consists of several MGC-24 (or Cd164
antigen) proteins from eukaryotic organisms.
MGC-24/CD164 is a sialomucin expressed in many normal
and cancerous tissues. In humans, soluble and
transmembrane forms of MGC-24 are produced by
alternative splicing.
Length = 187
Score = 29.2 bits (65), Expect = 3.4
Identities = 16/78 (20%), Positives = 26/78 (33%), Gaps = 3/78 (3%)
Query: 365 AEPSQTTSESTEKKES-SPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVST 423
EP +S++ K + A+ PVP + P+ P T + S
Sbjct: 83 EEPGYCSSQAEVVKSGCQIYNTTDSCSVATTTPVPTNSTAKPTITPSPTTSHHHVT--SE 140
Query: 424 PTETAAASPVAAPVPSPT 441
P +P + P T
Sbjct: 141 PKTNTTVTPTSQPDRKST 158
>gnl|CDD|237803 PRK14724, PRK14724, DNA topoisomerase III; Provisional.
Length = 987
Score = 30.3 bits (68), Expect = 3.5
Identities = 19/81 (23%), Positives = 29/81 (35%), Gaps = 2/81 (2%)
Query: 438 PSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPS 497
P T ++ AAS A A+A A+T A P AA P+
Sbjct: 856 PRKTAAAKAGAASAAFGGTVAVKAAKPAKKAAAKKVAAKT--AAAKTPRKAAKKKAAPPA 913
Query: 498 VPAEPTPTASPVQTSQPCAST 518
+P+ + V ++P A
Sbjct: 914 AGLKPSAALAAVIGAEPVARP 934
Score = 28.8 bits (64), Expect = 8.7
Identities = 17/81 (20%), Positives = 23/81 (28%)
Query: 418 PAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAET 477
P + AA++ V AA+ V A A TP PA
Sbjct: 856 PRKTAAAKAGAASAAFGGTVAVKAAKPAKKAAAKKVAAKTAAAKTPRKAAKKKAAPPAAG 915
Query: 478 PGAPEPVPSPAAPAPVETPSV 498
+ + PV P V
Sbjct: 916 LKPSAALAAVIGAEPVARPEV 936
>gnl|CDD|211344 cd02867, PseudoU_synth_TruB_4, Pseudouridine synthase homolog 4.
This group consists of Eukaryotic TruB proteins similar
to Saccharomyces cerevisiae Pus4. S. cerevisiae Pus4,
makes psi55 in the T loop of both cytoplasmic and
mitochondrial tRNAs. Psi55 is almost universally
conserved. Pseudouridine synthases catalyze the
isomerization of specific uridines in an RNA molecule to
pseudouridines (5-ribosyluracil, psi).
Length = 312
Score = 29.7 bits (67), Expect = 3.6
Identities = 17/104 (16%), Positives = 26/104 (25%), Gaps = 18/104 (17%)
Query: 358 EPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETT 417
+ E S + K+ + V E+ A +PV T
Sbjct: 194 VEEEGKQYERSV--VKMLGKELKTFAEVTELTATAEGDPVEE-----------VEATHEE 240
Query: 418 PAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVD 461
S E A + S + +PAA V
Sbjct: 241 SKRKSEVEEEANEKSLGPEARSLESDA-----GRGSFSPAAMVR 279
>gnl|CDD|218735 pfam05760, IER, Immediate early response protein (IER). This
family consists of several eukaryotic immediate early
response (IER) 2 and 5 proteins. The role of IER5 is
unclear although it play an important role in mediating
the cellular response to mitogenic signals. Again,
little is known about the function of IER2 although it
is thought to play a role in mediating the cellular
responses to a variety of extracellular signals.
Length = 272
Score = 29.5 bits (66), Expect = 3.6
Identities = 25/125 (20%), Positives = 38/125 (30%), Gaps = 16/125 (12%)
Query: 359 PSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTP-PVATPTETT 417
++ P P + P P + P + EP + +P P P
Sbjct: 60 QAEQPMVPPPEQQ-----------PGAPRLHPPSGAEPPLPARAASPEEEQPAPEPAFYR 108
Query: 418 PAPVSTP---TETAAASPVAAPVPSPTTPVES-PAASTPVEAPAAPVDTPVTPVASAPPT 473
P+ E A+ + S TT ++ T VE+P D P P
Sbjct: 109 PSVSEGFPASGERPDATSTGSGQCSQTTVLDLDTHVVTTVESPYLHQDCPCQAEDGQPAP 168
Query: 474 PAETP 478
PA
Sbjct: 169 PAVCK 173
Score = 28.7 bits (64), Expect = 7.2
Identities = 19/100 (19%), Positives = 24/100 (24%), Gaps = 1/100 (1%)
Query: 418 PAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAET 477
P+ P E +P P PS P A++P E AP P S +
Sbjct: 62 EQPMVPPPEQQPGAPRLHP-PSGAEPPLPARAASPEEEQPAPEPAFYRPSVSEGFPASGE 120
Query: 478 PGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQTSQPCAS 517
S T SP
Sbjct: 121 RPDATSTGSGQCSQTTVLDLDTHVVTTVESPYLHQDCPCQ 160
Score = 28.7 bits (64), Expect = 7.5
Identities = 20/76 (26%), Positives = 27/76 (35%)
Query: 443 PVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEP 502
E P P + P AP P + P A +P +P P PA P + PA
Sbjct: 60 QAEQPMVPPPEQQPGAPRLHPPSGAEPPLPARAASPEEEQPAPEPAFYRPSVSEGFPASG 119
Query: 503 TPTASPVQTSQPCAST 518
+ S C+ T
Sbjct: 120 ERPDATSTGSGQCSQT 135
>gnl|CDD|113398 pfam04625, DEC-1_N, DEC-1 protein, N-terminal region. The
defective chorion-1 gene (dec-1) in Drosophila encodes
follicle cell proteins necessary for proper eggshell
assembly. Multiple products of the dec-1 gene are formed
by alternative RNA splicing and proteolytic processing.
Cleavage products include S80 (80 kDa) which is
incorporated into the eggshell, and further proteolysis
of S80 gives S60 (60 kDa).
Length = 407
Score = 29.8 bits (66), Expect = 3.8
Identities = 21/76 (27%), Positives = 26/76 (34%), Gaps = 18/76 (23%)
Query: 408 PPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPV 467
P V + PA S P AA+PV AP P+P A
Sbjct: 84 PQVGSFLAQLPAMPSMPGLLGAAAPVPAPAPAP-----------------AAAPPAAPAP 126
Query: 468 ASAPPTPAETPGAPEP 483
A+ P A P A +P
Sbjct: 127 AADTP-AAPIPDAVQP 141
>gnl|CDD|218421 pfam05086, Dicty_REP, Dictyostelium (Slime Mold) REP protein. This
family consists of REP proteins from Dictyostelium
(Slime molds). REP protein is likely involved in
transcription regulation and control of DNA replication,
specifically amplification of plasmid at low copy
numbers. The formation of homomultimers may be required
for their regulatory activity.
Length = 910
Score = 30.2 bits (68), Expect = 3.8
Identities = 15/72 (20%), Positives = 26/72 (36%), Gaps = 6/72 (8%)
Query: 356 TIEPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTE 415
+PSK P + TT+ +T P T + S++ +S AP T +
Sbjct: 245 NSQPSKRPNNTTTTTTTTTT--TTFQPRT----RKRKSIDDHKLSLNQAPEKFKNNTKPD 298
Query: 416 TTPAPVSTPTET 427
P + +
Sbjct: 299 DDPQSDFSDKGS 310
>gnl|CDD|224471 COG1554, ATH1, Trehalose and maltose hydrolases (possible
phosphorylases) [Carbohydrate transport and metabolism].
Length = 772
Score = 30.0 bits (68), Expect = 3.8
Identities = 10/48 (20%), Positives = 17/48 (35%)
Query: 80 RPDLGITFTKIHAWRLTQYSKCVFLDADVLIVQNCDELFDREELSAAP 127
R L +T +I W D ++ ++ D D EE+
Sbjct: 528 REKLNVTTEEIEKWADIAKKMYYPEDEELGVIAQFDGFLDLEEIDLDA 575
>gnl|CDD|223010 PHA03215, PHA03215, nuclear protein UL24; Provisional.
Length = 262
Score = 29.5 bits (66), Expect = 3.9
Identities = 12/38 (31%), Positives = 13/38 (34%)
Query: 468 ASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPT 505
A P + G P PA PA E P PT
Sbjct: 204 ARRPRSRRRPRGGAAGPPVPAEPAAPERPPADPTPTSA 241
Score = 29.5 bits (66), Expect = 4.3
Identities = 15/56 (26%), Positives = 18/56 (32%), Gaps = 3/56 (5%)
Query: 441 TTPVESPA--ASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVE 494
P+E A A+ PP PAE P APE P+ P
Sbjct: 188 AVPLEPRTTRRGRRRGARRPRSRRRPRGGAAGPPVPAE-PAAPERPPADPTPTSAR 242
>gnl|CDD|218712 pfam05710, Coiled, Coiled coil. This region is found in a group of
Dictyostelium discoideum proteins. It is likely to form
a coiled-coil. Some of the proteins are regulated by
cyclic AMP and are expressed late in development.
Length = 90
Score = 27.9 bits (62), Expect = 3.9
Identities = 14/35 (40%), Positives = 26/35 (74%), Gaps = 2/35 (5%)
Query: 194 SVSSISHSRENSADS--AFGTSTITSTSSSVSGGG 226
S+SSI +S+ +S S +FG+S+++ S+S++ GG
Sbjct: 6 SISSIGNSKSSSKSSISSFGSSSLSMGSNSIACGG 40
>gnl|CDD|191179 pfam05053, Menin, Menin. MEN1, the gene responsible for multiple
endocrine neoplasia type 1, is a tumour suppressor gene
that encodes a protein called Menin which may be an
atypical GTPase stimulated by nm23.
Length = 618
Score = 30.0 bits (67), Expect = 3.9
Identities = 21/112 (18%), Positives = 32/112 (28%), Gaps = 15/112 (13%)
Query: 357 IEPSKPPAAEPSQTTSESTE------KKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPV 410
P K E+ E ++ES +P+ P P +PA +
Sbjct: 458 KLPEKEAKESKEAAGEEAREGRRRGPRRESKSQ-----EPSGGESPNP--ELPANNNNSN 510
Query: 411 ATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDT 462
+ A T + T V P +S P + PV T
Sbjct: 511 SNNNNNNGADRKEAAATTGNA--TTTSNGSGTSVPLPVSSEPPQHKEGPVIT 560
>gnl|CDD|226676 COG4223, COG4223, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 422
Score = 29.6 bits (66), Expect = 4.1
Identities = 22/112 (19%), Positives = 26/112 (23%), Gaps = 5/112 (4%)
Query: 403 PAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDT 462
P A P A + T+ AAA A PV A
Sbjct: 6 EPVRIKPGAVPI--VAAKAAEQTDPAAAEEAADADQPKAEPVH---ADQTDLEADGVGQA 60
Query: 463 PVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQTSQP 514
A A E P P+ A A + P T P
Sbjct: 61 GTEESAEAKAVEPEMPYPGSDAPADRTAASDANAEDAAAARSASKPTATRGP 112
Score = 28.8 bits (64), Expect = 7.8
Identities = 25/115 (21%), Positives = 36/115 (31%), Gaps = 4/115 (3%)
Query: 364 AAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVST 423
+E + + + PAA+ E + P
Sbjct: 2 KSEREPVRIKPGAVPIVAAKAAEQTDPAAA-EEAADADQPKAEPVHADQTDLEADGVGQA 60
Query: 424 PT-ETAAASPVAAPVPSP--TTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPA 475
T E+A A V +P P P + AAS AA + P A+ PTPA
Sbjct: 61 GTEESAEAKAVEPEMPYPGSDAPADRTAASDANAEDAAAARSASKPTATRGPTPA 115
>gnl|CDD|225369 COG2812, DnaX, DNA polymerase III, gamma/tau subunits [DNA
replication, recombination, and repair].
Length = 515
Score = 29.7 bits (67), Expect = 4.2
Identities = 22/113 (19%), Positives = 33/113 (29%), Gaps = 8/113 (7%)
Query: 376 EKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAA 435
E +S P ++ A +E V P ++ AP + A A
Sbjct: 359 EAAPASDAASPLLQRAPRLEQELVLKANVSLAAA---PAQSPQAPALSKNPELKAREQLA 415
Query: 436 PVP--SPTTPVESPAASTPVEAPAAPVDTPVT---PVASAPPTPAETPGAPEP 483
S P S + PV + + VT A A P +P
Sbjct: 416 TKIKKSEPAPESSEPSLAPVRSFWGELLDEVTAQKLKAEAKVLKDSDPVLAKP 468
>gnl|CDD|234336 TIGR03734, PRTRC_parB, PRTRC system ParB family protein. A novel
genetic system characterized by six major proteins,
included a ParB homolog and a ThiF homolog, is
designated PRTRC, or ParB-Related,ThiF-Related Cassette.
It is often found on plasmids. This protein family the
member related to ParB, and is designated PRTRC system
ParB family protein.
Length = 554
Score = 29.7 bits (67), Expect = 4.4
Identities = 15/49 (30%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Query: 448 AASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETP 496
AA+ + PAAP P TP P T GA +P + A +
Sbjct: 327 AAAAAAQKPAAPAAGPGTPAKEKSPAETATSGAAKPA-AKKAVPSSQPS 374
Score = 29.3 bits (66), Expect = 5.2
Identities = 16/52 (30%), Positives = 20/52 (38%), Gaps = 2/52 (3%)
Query: 444 VESPAASTPVEAPAAPVDTPVT--PVASAPPTPAETPGAPEPVPSPAAPAPV 493
+ AA+ APAA TP A + A P A + VPS V
Sbjct: 326 RAAAAAAQKPAAPAAGPGTPAKEKSPAETATSGAAKPAAKKAVPSSQPSNRV 377
>gnl|CDD|173181 PRK14718, PRK14718, ribonuclease III; Provisional.
Length = 467
Score = 29.8 bits (66), Expect = 4.4
Identities = 28/151 (18%), Positives = 49/151 (32%), Gaps = 17/151 (11%)
Query: 364 AAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVST 423
AA+ +++ E K + K A + VP + + +P +T
Sbjct: 295 AAQLRADDAKAGETKAGEARASADAKAGAHTHAAAMPAVPEQAD-------DAARSPATT 347
Query: 424 PTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPE- 482
P A+ V + P AS P E PAA D P + P + P+
Sbjct: 348 PVAVIRAAHVEHGLDK-----GEPRASKPAEKPAAATDKPPEKASDKPSPEKTSEKTPDK 402
Query: 483 ----PVPSPAAPAPVETPSVPAEPTPTASPV 509
+ + P + A+ A+ +
Sbjct: 403 SHEKQLDKSSEPVAEKALDKTADKPDAAARL 433
>gnl|CDD|234351 TIGR03773, anch_rpt_wall, putative ABC transporter-associated
repeat protein. Members of this protein family occur in
genomes that contain a three-gene ABC transporter operon
associated with the presence of domain TIGR03769. That
domain occurs as a single-copy insert in the
substrate-binding protein, and occurs in two or more
copies in members of this protein family. Members of
this family typically are encoded adjacent to the said
transporter operon and may serve as a substrate
receptor.
Length = 513
Score = 29.5 bits (66), Expect = 4.6
Identities = 20/86 (23%), Positives = 27/86 (31%), Gaps = 1/86 (1%)
Query: 434 AAPVPSPTTPVESPAASTPV-EAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAP 492
A P PAA P+ + PA+ V A +P A AP
Sbjct: 179 ATGAGKPQNDANGPAADKPLFDDPASGVQALGDESAFSPGQQATVQIGKSVRLPADAPLG 238
Query: 493 VETPSVPAEPTPTASPVQTSQPCAST 518
V V A P+ +S + T
Sbjct: 239 VAAVVVKAAPSTGSSDAEGGLTIIET 264
>gnl|CDD|226417 COG3901, NosR, Regulator of nitric oxide reductase transcription
[Transcription].
Length = 482
Score = 29.5 bits (66), Expect = 4.7
Identities = 12/58 (20%), Positives = 17/58 (29%), Gaps = 2/58 (3%)
Query: 453 VEAPAAPVDTPVTPVASAPPTP-AETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPV 509
V+ D + P A G P P+P P E + AE +
Sbjct: 367 VQRVDGARDKAFVSFDLSYWLPDAYLQGGRPPAPAPRRPWRAEEAT-AAEFVAELVAL 423
>gnl|CDD|216513 pfam01456, Mucin, Mucin-like glycoprotein. This family of
trypanosomal proteins resemble vertebrate mucins. The
protein consists of three regions. The N and C terminii
are conserved between all members of the family, whereas
the central region is not well conserved and contains a
large number of threonine residues which can be
glycosylated. Indirect evidence suggested that these
genes might encode the core protein of parasite mucins,
glycoproteins that were proposed to be involved in the
interaction with, and invasion of, mammalian host cells.
This family contains an N-terminal signal peptide.
Length = 143
Score = 28.7 bits (63), Expect = 4.7
Identities = 22/89 (24%), Positives = 30/89 (33%), Gaps = 3/89 (3%)
Query: 412 TPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAP 471
T T TTP +T T T + + TT + +T EAP+ T P
Sbjct: 48 TTTTTTPPTTTTTTTTTTTTITTTTTKTTTTTTTTTTTTTTTEAPSKNTTTSEAP---TT 104
Query: 472 PTPAETPGAPEPVPSPAAPAPVETPSVPA 500
E S + A V P + A
Sbjct: 105 TDTRAPSSIREIDGSLGSSAWVCAPLLLA 133
>gnl|CDD|233186 TIGR00920, 2A060605, 3-hydroxy-3-methylglutaryl-coenzyme A
reductase. [Transport and binding proteins,
Carbohydrates, organic alcohols, and acids].
Length = 889
Score = 29.9 bits (67), Expect = 4.8
Identities = 23/112 (20%), Positives = 32/112 (28%), Gaps = 6/112 (5%)
Query: 368 SQTTSESTEK-KESSPPTVPEVKPAASVEPVPV-SPVPAPSTPPVATPTETTPAPVSTPT 425
SQ +EST K P P +E + T V+ E A
Sbjct: 337 SQGETESTVSLKNGDPVVNPVSTDKKQLEYCCRRELTVSADTIVVSI-LEEALASKFVFF 395
Query: 426 ETAAASPVAAPVPSP---TTPVESPAASTPVEAPAAPVDTPVTPVASAPPTP 474
E P S + PV + T + +AP + A P
Sbjct: 396 EVIKPLPTETGSDSWVEASFPVGHKYSGTEQPSCSAPKEPEEELPAEPRPID 447
>gnl|CDD|219241 pfam06958, Pyocin_S, S-type Pyocin. This family represents a
conserved region approximately 180 residues long within
bacterial S-type pyocins. Pyocins are polypeptide toxins
produced by, and active against, bacteria. S-type
pyocins cause cell death by DNA breakdown due to
endonuclease activity.
Length = 139
Score = 28.5 bits (64), Expect = 4.9
Identities = 22/89 (24%), Positives = 26/89 (29%), Gaps = 4/89 (4%)
Query: 397 VPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAP 456
V P PV V T A P+ + S+P P
Sbjct: 32 VKTGGGGVPDRVPVRQAVLDAETGVYEFTLDAVPGRTILWTPASPPGDIPSSTSSPAPPP 91
Query: 457 AAPVDT--PVTPVASAPPTPAETPGAPEP 483
PV T P+TPV TP P E
Sbjct: 92 DTPVITGTPITPVVDPVITP--YPAPDEK 118
>gnl|CDD|213540 TIGR00562, proto_IX_ox, protoporphyrinogen oxidase. This enzyme
oxidizes protoporphyrinogen IX to protoporphyrin IX, a
precursor of heme and chlorophyll. Bacillus subtilis
HemY also has coproporphyrinogen III to coproporphyrin
III oxidase activity in a heterologous expression
system, although the role for this activity in vivo is
unclear. This protein is a flavoprotein and has a
beta-alpha-beta dinucleotide binding motif near the
amino end [Biosynthesis of cofactors, prosthetic groups,
and carriers, Heme, porphyrin, and cobalamin].
Length = 462
Score = 29.4 bits (66), Expect = 4.9
Identities = 11/62 (17%), Positives = 17/62 (27%), Gaps = 4/62 (6%)
Query: 349 IWKKISQTIEPSKPPAAEPSQTTSESTEKKESSPPTVPE--VKPAASVEPVPVSPVPAPS 406
+ ++ + K A P E S T + + PVP P
Sbjct: 54 LIERGPDSFLERKKSA--PDLVKDLGLEHVLVSDATGQRYVLVNRGKLMPVPTKIAPFVK 111
Query: 407 TP 408
T
Sbjct: 112 TG 113
>gnl|CDD|233273 TIGR01108, oadA, oxaloacetate decarboxylase alpha subunit. This
model describes the bacterial oxaloacetate decarboxylase
alpha subunit and its equivalents in archaea. The
oxaloacetate decarboxylase Na+ pump is the paradigm of
the family of Na+ transport decarboxylases that present
in bacteria and archaea. It a multi subunit enzyme
consisting of a peripheral alpha-subunit and integral
membrane subunits beta and gamma. The energy released by
the decarboxylation reaction of oxaloacetate is coupled
to Na+ ion pumping across the membrane [Transport and
binding proteins, Cations and iron carrying compounds,
Energy metabolism, Other].
Length = 582
Score = 29.4 bits (66), Expect = 4.9
Identities = 17/85 (20%), Positives = 23/85 (27%), Gaps = 6/85 (7%)
Query: 411 ATPTETTPAPVSTPTETAAASPVAAPVPSPTTPV-ESPAASTPVEAPAAPVD-----TPV 464
P P P E A V + + +P T
Sbjct: 441 HNPAAFEPKPEEKVIEQEHAQVVGKYEETHASGSYTVEVEGKAFVVKVSPGGDVSQITAS 500
Query: 465 TPVASAPPTPAETPGAPEPVPSPAA 489
P ++ T A GA PV +P A
Sbjct: 501 APANTSGGTVAAKAGAGTPVTAPIA 525
>gnl|CDD|234184 TIGR03362, VI_chp_7, type VI secretion-associated protein, VC_A0119
family. This protein family is one of two related
families in type VI secretion systems that contain an
ImpA-related N-terminal domain (pfam06812) [Protein
fate, Protein and peptide secretion and trafficking,
Cellular processes, Pathogenesis].
Length = 301
Score = 29.3 bits (66), Expect = 5.0
Identities = 13/36 (36%), Positives = 15/36 (41%)
Query: 428 AAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTP 463
A AAP PT P +PA +T AP P
Sbjct: 1 QRAQNEAAPAAVPTAPASAPAPATTAAAPQPPEPPA 36
Score = 28.5 bits (64), Expect = 8.4
Identities = 17/47 (36%), Positives = 19/47 (40%), Gaps = 5/47 (10%)
Query: 466 PVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQTS 512
A PA P AP P+PA A + P P P AS V S
Sbjct: 1 QRAQNEAAPAAVPTAPASAPAPATTA-----AAPQPPEPPASVVDDS 42
>gnl|CDD|240321 PTZ00230, PTZ00230, variable surface protein Vir7; Provisional.
Length = 364
Score = 29.4 bits (66), Expect = 5.0
Identities = 17/92 (18%), Positives = 34/92 (36%), Gaps = 4/92 (4%)
Query: 351 KKISQTIEPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPP- 409
K++ + E + + E+ S PP+ P +++ S
Sbjct: 217 KQLEEGDEGERVQQPTLTAIPGLEGEESLSVPPSDEXS-PGSTLSRGFSDVRVPDSGIEL 275
Query: 410 --VATPTETTPAPVSTPTETAAASPVAAPVPS 439
+A P+ +P +++ + T A S VPS
Sbjct: 276 GSIADPSNDSPTSITSKSITGAVSVAGFLVPS 307
>gnl|CDD|177590 PHA03349, PHA03349, tegument protein UL16; Provisional.
Length = 343
Score = 29.2 bits (66), Expect = 5.1
Identities = 10/43 (23%), Positives = 16/43 (37%)
Query: 378 KESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAP 420
+ S +PE P + EP+P +P P + P
Sbjct: 115 SDVSAAPLPEDLPDPAAEPLPTAPAAHLDLSAFLVPAQPPKDP 157
>gnl|CDD|168631 PRK06630, PRK06630, hypothetical protein; Provisional.
Length = 99
Score = 27.6 bits (61), Expect = 5.2
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Query: 325 EDHIHRQHWEEGHIDYLGKDSWDNIWKKISQTIEPSKPP 363
ED Q++E +IDYLG+ I+K ++ EP+K P
Sbjct: 18 EDEFLNQYYESRNIDYLGRPRRFVIYKNVN---EPTKIP 53
>gnl|CDD|132031 TIGR02986, restrict_Alw26I, type II restriction endonuclease,
Alw26I/Eco31I/Esp3I family. Members of this family are
type II restriction endonucleases of the
Alw26I/Eco31I/Esp3I family. Characterized specificities
of three members are GGTCTC, CGTCTC, and the shared
subsequence GTCTC [DNA metabolism,
Restriction/modification].
Length = 424
Score = 29.4 bits (66), Expect = 5.3
Identities = 14/53 (26%), Positives = 20/53 (37%), Gaps = 5/53 (9%)
Query: 310 QVPIGTPISAEQLAYEDHIHRQHWEEGHIDYLGKDSWDNIW-KKISQTIEPSK 361
QV Y + R+ W E D LG S +N K ++ I P+
Sbjct: 33 QVSSKKTTGF----YTYYQARRAWWEQKADELGIPSIENGRYSKAARLIHPTG 81
>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter. This
model describes the photoreceptor protein (rim protein)
in eukaryotes. It is the member of ABC transporter
superfamily. Rim protein is a membrane glycoprotein which
is localized in the photoreceptor outer segment discs.
Mutation/s in its genetic loci is implicated in the
recessive Stargardt's disease [Transport and binding
proteins, Other].
Length = 2272
Score = 29.6 bits (66), Expect = 5.4
Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 420 PVSTPTETAAASPVAAPVPSPTTPVESPAASTPV--EAPAAPVDT 462
P S PTE A +P A+ SP P P P E P P++T
Sbjct: 1302 PCSGPTEKAGQTPQASHTCSPGQPAAHPEGQPPPEPEDPGVPLNT 1346
>gnl|CDD|114645 pfam05934, MCLC, Mid-1-related chloride channel (MCLC). This
family consists of several mid-1-related chloride
channels. mid-1-related chloride channel (MCLC) proteins
function as a chloride channel when incorporated in the
planar lipid bilayer.
Length = 577
Score = 29.3 bits (65), Expect = 5.4
Identities = 20/114 (17%), Positives = 33/114 (28%), Gaps = 10/114 (8%)
Query: 383 PTVPEVKPAASVEPVPVSPVPAPSTPPV--ATPTET-------TPAPVSTPTETAAASPV 433
P + + + PV P A P +T T +S + A P+
Sbjct: 463 PEILKAFDLDDADAREHPPVVPSHKSPTADADPKDTGGIKGEGTGEELSQ-EDHQIAKPI 521
Query: 434 AAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSP 487
E P A+ + + +P +P P +PV P
Sbjct: 522 KESGNDERGNTEGPEAAEKAQLKSEAAGSPDQGSTYSPARGVAGPRGEDPVSEP 575
>gnl|CDD|237855 PRK14900, valS, valyl-tRNA synthetase; Provisional.
Length = 1052
Score = 29.6 bits (66), Expect = 5.5
Identities = 25/140 (17%), Positives = 42/140 (30%), Gaps = 19/140 (13%)
Query: 365 AEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTP 424
+E + ++ E + PT + PAA +P + V + VA +E
Sbjct: 906 SEANSARRDTMEIQNEQKPT--QDGPAAEAQPAQENTVVESAEKAVAAVSEAA------- 956
Query: 425 TETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPV 484
AA+ VA + +E A + + T A + P
Sbjct: 957 --QQAATAVA-------SGIEKVAEAVRKTVRRSVKKAAATRAAMKKKVAKKAPAKKAAA 1007
Query: 485 PSPAAPAPVETPSVPAEPTP 504
AA A+ P
Sbjct: 1008 KKAAAKKAA-AKKKVAKKAP 1026
>gnl|CDD|185176 PRK15273, PRK15273, putative fimbrial outer membrane usher protein
SteB; Provisional.
Length = 881
Score = 29.4 bits (65), Expect = 5.6
Identities = 22/78 (28%), Positives = 31/78 (39%), Gaps = 6/78 (7%)
Query: 350 WKKISQTIEPSKPPAAEPSQTTSE---STEKKESSPPTVPEVKPAASVEPVPVSPVPAPS 406
W +Q E S PP P + + E PPT P+ +P+
Sbjct: 794 WDGAAQC-EASLPPTFTPELLANALLLPCKMLEGQPPTAPQKSSPLPAQPLIQEHTQTDG 852
Query: 407 TP--PVATPTETTPAPVS 422
P PVAT T+T P P++
Sbjct: 853 QPAAPVATTTQTPPIPLA 870
>gnl|CDD|185282 PRK15384, PRK15384, type III secretion system protein; Provisional.
Length = 336
Score = 28.9 bits (64), Expect = 6.1
Identities = 12/39 (30%), Positives = 23/39 (58%)
Query: 74 NLRLLSRPDLGITFTKIHAWRLTQYSKCVFLDADVLIVQ 112
N+ +L L + K+ + L+ S C++LDAD++I +
Sbjct: 192 NMAMLKAGQLFLEADKVGCYDLSTNSGCIYLDADMIITE 230
>gnl|CDD|148314 pfam06632, XRCC4, DNA double-strand break repair and V(D)J
recombination protein XRCC4. This family consists of
several eukaryotic DNA double-strand break repair and
V(D)J recombination protein XRCC4 sequences. In the
non-homologous end joining pathway of DNA double-strand
break repair, the ligation step is catalyzed by a
complex of XRCC4 and DNA ligase IV. It is thought that
XRCC4 and ligase IV are essential for alignment-based
gap filling, as well as for final ligation of the
breaks.
Length = 331
Score = 29.1 bits (65), Expect = 6.1
Identities = 24/122 (19%), Positives = 40/122 (32%), Gaps = 19/122 (15%)
Query: 348 NIWKKISQTIEPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAA-----SVEPVPVSPV 402
+I +K + K P + ST++++ +PP E PAA S+ P
Sbjct: 207 SIKQKKETSACSDKTPDEDS--KYDGSTDEEQEAPPKPSESMPAAVSKDDSLISSPDITD 264
Query: 403 PAPS------------TPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAAS 450
APS T P E P + + + +E+ S
Sbjct: 265 IAPSRKRRQRMQKNLGTEPKMATQEQQLQEKEKPDPSPPQTTKKTHSSAENMSLETLRNS 324
Query: 451 TP 452
+P
Sbjct: 325 SP 326
>gnl|CDD|192330 pfam09676, TraV, Type IV conjugative transfer system lipoprotein
(TraV). This entry includes TraV, which is a component
of conjugative type IV secretion system. TraV is an
outer membrane lipoprotein that is believed to interact
with the secretin TraK. The alignment contains three
conserved cysteines in the N-terminal half.
Length = 112
Score = 27.8 bits (62), Expect = 6.3
Identities = 13/57 (22%), Positives = 22/57 (38%), Gaps = 2/57 (3%)
Query: 392 ASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPA 448
P ++ A P +A P + V+ AA++ A P P P+ +P
Sbjct: 26 GGELPSRLAKPAAAGLPRLAEPAAGSGPSVTVTP--AASAVPLAARPLPRRPLRTPE 80
>gnl|CDD|223030 PHA03271, PHA03271, envelope glycoprotein C; Provisional.
Length = 490
Score = 29.2 bits (65), Expect = 6.3
Identities = 13/65 (20%), Positives = 24/65 (36%), Gaps = 1/65 (1%)
Query: 367 PSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVP-APSTPPVATPTETTPAPVSTPT 425
+ S S ++PP + + S + P++ VP +P T T T P +
Sbjct: 22 SGRVLSASLNPDLATPPVLAFNPSSISADGGPLAEVPASPPTELSTTVATKTAVPTTGEK 81
Query: 426 ETAAA 430
+
Sbjct: 82 SESHK 86
>gnl|CDD|221562 pfam12406, DUF3664, Surface protein. This family of proteins is
found in eukaryotes. Proteins in this family are
typically between 131 and 312 amino acids in length.
Length = 100
Score = 27.3 bits (60), Expect = 6.5
Identities = 27/94 (28%), Positives = 38/94 (40%), Gaps = 15/94 (15%)
Query: 347 DNIWKKISQTIEPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPS 406
+ + + Q+ EP++ EP Q T TE +E P TV +VE VP P
Sbjct: 21 NQLIDQAEQSQEPTQQEPIEPQQPTQPETEPEELEPETV-------TVE------VPEPV 67
Query: 407 TPPVATPTETTPAPVSTPTETAAASPVAAPVPSP 440
T P E+ T T+ + P PV P
Sbjct: 68 TS--EEPKESDQTEEPTETQDSKQEPTQQPVDEP 99
>gnl|CDD|180536 PRK06347, PRK06347, autolysin; Reviewed.
Length = 592
Score = 29.3 bits (65), Expect = 6.7
Identities = 20/96 (20%), Positives = 33/96 (34%), Gaps = 4/96 (4%)
Query: 400 SPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSP---TTPVESPAASTPVEAP 456
+ + P + + ET PA ++ + A + A +P T P P + E
Sbjct: 39 TSITVPGIEVIVSADETAPADEASKSAEANTTKEAPATATPENTTEPTVEPKQTETKEQT 98
Query: 457 AAPVD-TPVTPVASAPPTPAETPGAPEPVPSPAAPA 491
P + P P T P+ S + PA
Sbjct: 99 KTPEEKQPAAKQVEKAPAEPATVSNPDNATSSSTPA 134
>gnl|CDD|223079 PHA03419, PHA03419, E4 protein; Provisional.
Length = 200
Score = 28.4 bits (63), Expect = 6.7
Identities = 26/114 (22%), Positives = 30/114 (26%), Gaps = 3/114 (2%)
Query: 379 ESSPPTVPEVKPAASVEPVPVSPVPA--PSTPPVATPTETTPAPVSTPTETAAASPVAAP 436
E+ P P P S +P P P P P T P + P
Sbjct: 46 ETGYPFCPPTTPHPSSQPPPCPPSPGHPPQTNDTHEKDLALQPPPGGKKKEKKKKETEKP 105
Query: 437 VPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAP 490
P + P A P D P P E G P P P P
Sbjct: 106 AQGGEKPDQGPEAK-GEGEGHEPEDPPPEDTPPPPGGEGEVEGGPSPGPGPGPL 158
>gnl|CDD|220260 pfam09483, HpaP, Type III secretion protein (HpaP). This entry
represents proteins encoded by genes which are always
found in type III secretion operons, although their
function in the processes of secretion and virulence is
unclear. Hpa stands for Hrp-associated gene, where Hrp
stands for hypersensitivity response and virulence. see
also PMID:18584024.
Length = 185
Score = 28.6 bits (64), Expect = 6.7
Identities = 21/94 (22%), Positives = 25/94 (26%), Gaps = 9/94 (9%)
Query: 408 PPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPV 467
P A P + AA P+P P E P AP
Sbjct: 2 PAGAAPRAARRSFDYARLMRRAARAGPPGTPAPPGPAEDAHPEFPERPRDAPA------- 54
Query: 468 ASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAE 501
P P T G +P P A A + A
Sbjct: 55 --PPAPPRATDGDRDPQPLADALAEAMARAAAAR 86
>gnl|CDD|218970 pfam06278, DUF1032, Protein of unknown function (DUF1032). This
family consists of several conserved eukaryotic proteins
of unknown function.
Length = 565
Score = 29.1 bits (65), Expect = 6.9
Identities = 19/85 (22%), Positives = 24/85 (28%), Gaps = 4/85 (4%)
Query: 400 SPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAP 459
SPVP + PA E A P VE ++P P
Sbjct: 183 SPVPVLQF---SQEEPEGPAANGGYEEEAEGGAEPLPPEDHEVEVEPAEPRERHQSPIEP 239
Query: 460 VD-TPVTPVASAPPTPAETPGAPEP 483
V AP P+ P+P
Sbjct: 240 RRYRLRERVQEAPEPPSRLKETPDP 264
>gnl|CDD|188060 TIGR00531, BCCP, acetyl-CoA carboxylase, biotin carboxyl carrier
protein. This model is designed to identify biotin
carboxyl carrier protein as a peptide of acetyl-CoA
carboxylase. Scoring below the trusted cutoff is a
related protein encoded in a region associated with
polyketide synthesis in the prokaryote Saccharopolyspora
hirsuta, and a reported chloroplast-encoded biotin
carboxyl carrier protein that may be highly derived from
the last common ancestral sequence. Scoring below the
noise cutoff are biotin carboxyl carrier domains of
other enzymes such as pyruvate carboxylase.The gene name
is accB or fabE [Fatty acid and phospholipid metabolism,
Biosynthesis].
Length = 156
Score = 28.3 bits (63), Expect = 7.1
Identities = 21/68 (30%), Positives = 27/68 (39%), Gaps = 5/68 (7%)
Query: 445 ESPAASTPV-EAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVP---A 500
+ AA + AAPV V P A + PA AP P + V +P V
Sbjct: 35 AAAAAKKSAVQQAAAPVPAQV-PAAPSAQAPAPAVCAPAPAKADKKGHFVRSPMVGTFYR 93
Query: 501 EPTPTASP 508
P+P A P
Sbjct: 94 APSPDAKP 101
>gnl|CDD|218745 pfam05783, DLIC, Dynein light intermediate chain (DLIC). This
family consists of several eukaryotic dynein light
intermediate chain proteins. The light intermediate
chains (LICs) of cytoplasmic dynein consist of multiple
isoforms, which undergo post-translational modification
to produce a large number of species. DLIC1 is known to
be involved in assembly, organisation, and function of
centrosomes and mitotic spindles when bound to
pericentrin. DLIC2 is a subunit of cytoplasmic dynein 2
that may play a role in maintaining Golgi organisation
by binding cytoplasmic dynein 2 to its Golgi-associated
cargo.
Length = 490
Score = 29.0 bits (65), Expect = 7.2
Identities = 21/102 (20%), Positives = 38/102 (37%), Gaps = 9/102 (8%)
Query: 418 PAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPA-- 475
PA + E+ A SP +P + + + A+ +P+ + D + P A++ A
Sbjct: 365 PATPTRGVESPARSPGGSPRTTNRSGPRNVASVSPMTSVKKI-DPNMKPGAASEGVLANF 423
Query: 476 ------ETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQT 511
+ G+P +PA T + PV T
Sbjct: 424 FNSLLSKKTGSPGSPGGGGSPAGTGTNTQGTAKKSGQKPVLT 465
>gnl|CDD|118064 pfam09528, Ehrlichia_rpt, Ehrlichia tandem repeat (Ehrlichia_rpt).
This entry represents 77 residues of an 80 amino acid
(240 nucleotide) tandem repeat, found in a variable
number of copies in an immunodominant outer membrane
protein of Ehrlichia chaffeensis, a tick-borne obligate
intracellular pathogen.
Length = 707
Score = 29.2 bits (64), Expect = 7.3
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 375 TEKKESSPPTVPEVKPAASVEPVPVSPVPA 404
T ++E +P + +P A E +P++P+P
Sbjct: 582 TCEEEFTPEIKADSQPVADGEDIPINPMPC 611
>gnl|CDD|215474 PLN02877, PLN02877, alpha-amylase/limit dextrinase.
Length = 970
Score = 29.0 bits (65), Expect = 7.4
Identities = 13/81 (16%), Positives = 21/81 (25%)
Query: 422 STPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAP 481
+P A +P A + + + + P+ T A
Sbjct: 7 PSPAVHLAPAPCVARPRASSAAFVLRSRWLRSRGATSISFVAHRGRNFRVRIPSATSLAM 66
Query: 482 EPVPSPAAPAPVETPSVPAEP 502
PS A+ SVP
Sbjct: 67 ATRPSSASSFFTLELSVPTSL 87
>gnl|CDD|185594 PTZ00395, PTZ00395, Sec24-related protein; Provisional.
Length = 1560
Score = 29.3 bits (65), Expect = 7.6
Identities = 27/142 (19%), Positives = 46/142 (32%), Gaps = 2/142 (1%)
Query: 368 SQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTET 427
+Q+ + + S+P A P + P +TP P P + T
Sbjct: 403 AQSNAGFSNAGYSNPGNSNPGYNNAPNSNTPYNNPPNSNTPYSNPPNSNPPYSNLPYSNT 462
Query: 428 AAASPVAAPVPSPTTPVESPAA-STPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPS 486
++ + P P++ + +A + AA P A+ P A V +
Sbjct: 463 PYSNAPLSNAP-PSSAKDHHSAYHAAYQHRAANQPAANLPTANQPAANNFHGAAGNSVGN 521
Query: 487 PAAPAPVETPSVPAEPTPTASP 508
P A P + TA P
Sbjct: 522 PFASRPFGSAPYGGNAATTADP 543
>gnl|CDD|215964 pfam00513, Late_protein_L2, Late Protein L2.
Length = 466
Score = 28.8 bits (65), Expect = 7.6
Identities = 33/150 (22%), Positives = 49/150 (32%), Gaps = 28/150 (18%)
Query: 396 PVPVSPVPAPSTPPVATPTE---TTPAPVS----TPTETAAASPVAAPVPSPTTPVESPA 448
PV V P PPV + T P+ VS + + A P P+ + +
Sbjct: 74 PVRVVGTGTPVRPPVVVESTVGPTDPSIVSLVEESSIIESGAPIPPIPGDGSGFPITTSS 133
Query: 449 ASTP----VEAPAAPVDTPVT---------PVASAPPTPAETPGAPEPVPSPAAPA---- 491
+TP V V T P PP PAE G
Sbjct: 134 TTTPAILDVTPTTRTVHVSRTQYNNPLFTDPSVLQPPQPAEVSGHVLVSGQTIGTHSYEE 193
Query: 492 -PVETPSVPAEPTP---TASPVQTSQPCAS 517
P++T +V TP +++P+ + A
Sbjct: 194 IPMDTFAVSEGTTPPPISSTPIPGVRRVAR 223
>gnl|CDD|220944 pfam11018, Cuticle_3, Pupal cuticle protein C1. Insect cuticles
are composite structures whose mechanical properties are
optimised for biological function. The major components
are the chitin filament system and the cuticular
proteins, and the cuticle's properties are determined
largely by the interactions between these two sets of
molecules. The proteins can be ordered by species.
Length = 164
Score = 28.0 bits (62), Expect = 7.7
Identities = 21/92 (22%), Positives = 26/92 (28%), Gaps = 1/92 (1%)
Query: 418 PAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPV-TPVASAPPTPAE 476
P T A A+P +P + AA A AA P A A P
Sbjct: 48 YQPAYAKTAYAYAAPAVYAAAAPVYAAHAYAAPAVHYAAAAHYAAPAYAKYAYAAPAVTA 107
Query: 477 TPGAPEPVPSPAAPAPVETPSVPAEPTPTASP 508
P P P+V A P +
Sbjct: 108 KAAYAAPAPVYKTAYAAAAPAVYAHAAPVVAT 139
>gnl|CDD|204405 pfam10146, zf-C4H2, Zinc finger-containing protein. This is a
family of proteins which appears to have a highly
conserved zinc finger domain at the C terminal end,
described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is
predicted to contain a coiled coil. Members are
annotated as being tumour-associated antigen HCA127 in
humans but this could not confirmed.
Length = 215
Score = 28.3 bits (63), Expect = 7.8
Identities = 16/76 (21%), Positives = 21/76 (27%), Gaps = 4/76 (5%)
Query: 389 KPAASVEPVPVSPVPAPSTPPVATPTETTPA----PVSTPTETAAASPVAAPVPSPTTPV 444
+ V PVP+ PA + A A V P + P P
Sbjct: 123 PATSPVPPVPLPDPPAFPSTLPANAAAAAAAQQQRDVPQNLINRHRMPPSFQQPPPMKNC 182
Query: 445 ESPAASTPVEAPAAPV 460
S AP P+
Sbjct: 183 LSCHQQIHRNAPICPL 198
>gnl|CDD|237211 PRK12798, PRK12798, chemotaxis protein; Reviewed.
Length = 421
Score = 28.9 bits (65), Expect = 7.8
Identities = 15/50 (30%), Positives = 18/50 (36%), Gaps = 1/50 (2%)
Query: 428 AAASPVAAPV-PSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAE 476
AA VA V +P T +A E P+A P P P E
Sbjct: 335 EAARSVARQVRRAPATSPAKRSADAASEPPSAVAPAPQAPAQLPLSVPVE 384
>gnl|CDD|225401 COG2845, COG2845, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 354
Score = 28.6 bits (64), Expect = 7.9
Identities = 11/45 (24%), Positives = 17/45 (37%)
Query: 405 PSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAA 449
PP+A + P ++ A P A P+ T +S A
Sbjct: 72 GFPPPIAKVGPSLDMPRASAASEVAPRPGATAEPATTIAAKSRDA 116
>gnl|CDD|148635 pfam07139, DUF1387, Protein of unknown function (DUF1387). This
family represents a conserved region approximately 300
residues long within a number of hypothetical proteins
of unknown function that seem to be restricted to
mammals.
Length = 301
Score = 28.4 bits (63), Expect = 7.9
Identities = 28/145 (19%), Positives = 46/145 (31%), Gaps = 17/145 (11%)
Query: 370 TTSESTEKKESSPPTVPEVKPAASVEPVPVSPV-PAPSTPPV--------ATPTETT--- 417
T + +KK+S P K A+ E P P V A TE+
Sbjct: 4 TGKKKNKKKKSKPKPEAPAKSASKEETTPEEQAAPGDEKDEVNGFHANGSADDTESVDSL 63
Query: 418 ----PAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPT 473
+ E A + A P PS + + +E ++P + +S
Sbjct: 64 SEGLDSASLDAREPEAVTLDAPPSPSSSLTNGLSDLQSKLELQSSPHSSAKPHPSSDQHK 123
Query: 474 PAET-PGAPEPVPSPAAPAPVETPS 497
A+ P +P A + P+
Sbjct: 124 NAKKYVSKPSQPVTPNNSAHHDAPA 148
>gnl|CDD|197891 smart00818, Amelogenin, Amelogenins, cell adhesion proteins, play a
role in the biomineralisation of teeth. They seem to
regulate formation of crystallites during the secretory
stage of tooth enamel development and are thought to
play a major role in the structural organisation and
mineralisation of developing enamel. The extracellular
matrix of the developing enamel comprises two major
classes of protein: the hydrophobic amelogenins and the
acidic enamelins. Circular dichroism studies of porcine
amelogenin have shown that the protein consists of 3
discrete folding units: the N-terminal region appears to
contain beta-strand structures, while the C-terminal
region displays characteristics of a random coil
conformation. Subsequent studies on the bovine protein
have indicated the amelogenin structure to contain a
repetitive beta-turn segment and a "beta-spiral" between
Gln112 and Leu138, which sequester a (Pro, Leu, Gln)
rich region. The beta-spiral offers a probable site for
interactions with Ca2+ ions. Muatations in the human
amelogenin gene (AMGX) cause X-linked hypoplastic
amelogenesis imperfecta, a disease characterised by
defective enamel. A 9bp deletion in exon 2 of AMGX
results in the loss of codons for Ile5, Leu6, Phe7 and
Ala8, and replacement by a new threonine codon,
disrupting the 16-residue (Met1-Ala16) amelogenin signal
peptide.
Length = 165
Score = 28.2 bits (63), Expect = 7.9
Identities = 19/83 (22%), Positives = 25/83 (30%)
Query: 436 PVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVET 495
P TP + + P A P+ P P + P P P P P P
Sbjct: 77 PGQHSMTPTQHHQPNLPQPAQQPFQPQPLQPPQPQQPMQPQPPVHPIPPLPPQPPLPPMF 136
Query: 496 PSVPAEPTPTASPVQTSQPCAST 518
P P P P++ T
Sbjct: 137 PMQPLPPLLPDLPLEAWPATDKT 159
>gnl|CDD|235722 PRK06164, PRK06164, acyl-CoA synthetase; Validated.
Length = 540
Score = 28.9 bits (65), Expect = 8.0
Identities = 18/54 (33%), Positives = 21/54 (38%), Gaps = 6/54 (11%)
Query: 444 VESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPS 497
V+ A +TP AP A V P PA A E P A A + T S
Sbjct: 143 VDDAADATPAPAPGARVQLFAL------PDPAPPAAAGERAADPDAGALLFTTS 190
>gnl|CDD|218332 pfam04929, Herpes_DNAp_acc, Herpes DNA replication accessory
factor. Replicative DNA polymerases are capable of
polymerising tens of thousands of nucleotides without
dissociating from their DNA templates. The high
processivity of these polymerases is dependent upon
accessory proteins that bind to the catalytic subunit of
the polymerase or to the substrate. The Epstein-Barr
virus (EBV) BMRF1 protein is an essential component of
the viral DNA polymerase and is absolutely required for
lytic virus replication. BMRF1 is also a transactivator.
This family is predicted to have a UL42 like structure.
Length = 381
Score = 28.5 bits (64), Expect = 9.0
Identities = 13/65 (20%), Positives = 19/65 (29%), Gaps = 1/65 (1%)
Query: 373 ESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAA-AS 431
+S+ + P S P T TET P + + AA
Sbjct: 290 DSSVEANGVEPEPTGSVSDRPRHLSSDSSPSPPDTSDSDPSTETPPPASLSHSPPAAFER 349
Query: 432 PVAAP 436
P+A
Sbjct: 350 PLALS 354
Score = 28.5 bits (64), Expect = 9.7
Identities = 12/73 (16%), Positives = 22/73 (30%), Gaps = 5/73 (6%)
Query: 406 STPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVT 465
+ P P + ++ + P T P+ TP A + +
Sbjct: 288 NADSSVEANGVEPEPTGSVSDRPRHLSSDSSPSPPDTSDSDPSTETPPPASLSH-----S 342
Query: 466 PVASAPPTPAETP 478
P A+ A +P
Sbjct: 343 PPAAFERPLALSP 355
>gnl|CDD|219865 pfam08493, AflR, Aflatoxin regulatory protein. This domain is
found in the aflatoxin regulatory protein (AflR) which
is involved in the regulation of the biosynthesis of
aflatoxin in the fungal genus Aspergillus. It occurs
together with the fungal Zn(2)-Cys(6) binuclear cluster
domain (pfam00172).
Length = 275
Score = 28.4 bits (63), Expect = 9.1
Identities = 37/162 (22%), Positives = 55/162 (33%), Gaps = 25/162 (15%)
Query: 374 STEKKESSP--PTVPEVKPAASVEP-VPVSPVPAPSTPPVATPTETTPAPVSTPTETAAA 430
T SSP P +S P PV P+ PPVATP TP T++
Sbjct: 3 ETPNTASSPTIPANTTANTTSSSHPQPPVQSGPSSIQPPVATPH--------TPNGTSSP 54
Query: 431 SPVAAPVPSPTTP-----VESPAASTPVEAPAAPVDTPVTPVAS-----APPTPAETPGA 480
SP + P P + SP AS + + + + T +P + A
Sbjct: 55 SPKFSHQSPPAEPELWGSILSPNASNQDQGDLSSLLSVNTDFGQLFASLSPSPLFDGNDA 114
Query: 481 PEPVPSPA----APAPVETPSVPAEPTPTASPVQTSQPCAST 518
+ A V +P T SP +++ +T
Sbjct: 115 DLHAEATGELSVADLEVSSPMQDLFLTSALSPPSSARTSHTT 156
>gnl|CDD|237873 PRK14969, PRK14969, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 527
Score = 28.6 bits (64), Expect = 9.2
Identities = 7/44 (15%), Positives = 9/44 (20%)
Query: 465 TPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASP 508
P P + A P A P+ S
Sbjct: 359 RPSEQDSGAGRAPGAVPGVNRTRAVPTAAPAAPAAATPSDRQSF 402
>gnl|CDD|220596 pfam10138, Tellurium_res, Tellurium resistance protein. Members of
this family confer resistance to the metalloid element
tellurium and its salts.
Length = 98
Score = 27.0 bits (60), Expect = 9.2
Identities = 16/35 (45%), Positives = 17/35 (48%), Gaps = 8/35 (22%)
Query: 478 PGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQTS 512
P AP P P+PA PAP P P A PV S
Sbjct: 1 PAAPVPPPAPAPPAPA--------PPPAAPPVSLS 27
>gnl|CDD|181618 PRK09038, PRK09038, flagellar motor protein MotD; Reviewed.
Length = 281
Score = 28.4 bits (64), Expect = 9.3
Identities = 15/41 (36%), Positives = 18/41 (43%), Gaps = 3/41 (7%)
Query: 457 AAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPS 497
V +TPV SA TP A + AAPA +T S
Sbjct: 243 NLDVRRSLTPVGSANATP---DAALRRAGTQAAPATAKTDS 280
>gnl|CDD|236797 PRK10927, PRK10927, essential cell division protein FtsN;
Provisional.
Length = 319
Score = 28.5 bits (63), Expect = 9.3
Identities = 20/75 (26%), Positives = 25/75 (33%), Gaps = 4/75 (5%)
Query: 407 TPPVATPTETTPAPVSTPTETAAASPVAA-PVPSPTTPVESPAA---STPVEAPAAPVDT 462
+A + TT T T+ A+PV A P S + P TP A
Sbjct: 165 QQRLAQQSRTTEQSWQQQTRTSQAAPVQAQPRQSKPASTQQPYQDLLQTPAHTTAQSKPQ 224
Query: 463 PVTPVASAPPTPAET 477
PV A P T
Sbjct: 225 QAAPVTRAADAPKPT 239
>gnl|CDD|216648 pfam01690, PLRV_ORF5, Potato leaf roll virus readthrough protein.
This family consists mainly of the potato leaf roll
virus readthrough protein. This is generated via a
readthrough of open reading frame 3 a coat protein
allowing transcription of open reading frame 5 to give
an extended coat protein with a large c-terminal
addition or read through domain. The readthrough protein
is thought to play a role in the circulative aphid
transmission of potato leaf roll virus. Also in the
family is open reading frame 6 from beet western yellows
virus and potato leaf roll virus both luteovirus and an
unknown protein from cucurbit aphid-borne yellows virus
a closterovirus.
Length = 460
Score = 28.5 bits (64), Expect = 9.8
Identities = 10/25 (40%), Positives = 11/25 (44%), Gaps = 1/25 (4%)
Query: 468 ASAPPTPAETPGAPEPVPSPAAPAP 492
P P TP P P P+P P P
Sbjct: 3 GEPGPKPGPTPTPPPPAPTP-EPTP 26
>gnl|CDD|236081 PRK07735, PRK07735, NADH dehydrogenase subunit C; Validated.
Length = 430
Score = 28.4 bits (63), Expect = 9.8
Identities = 25/139 (17%), Positives = 35/139 (25%), Gaps = 11/139 (7%)
Query: 364 AAEPSQTTSESTEKKESSPP----TVPEVKPAASVEPVPVSPVPAP---STPPVATPTET 416
AE S+ E+ EK+++ P T+ E K A+ + A T E
Sbjct: 31 GAEISKLEEENREKEKALPKNDDMTIEEAKRRAAAAAKAKAAALAKQKREGTEEVTEEEK 90
Query: 417 TPAPVSTPTE----TAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPP 472
A AA + T E AA A A +
Sbjct: 91 AKAKAKAAAAAKAKAAALAKQKREGTEEVTEEEKAAAKAKAAAAAKAKAAALAKQKREGT 150
Query: 473 TPAETPGAPEPVPSPAAPA 491
A A
Sbjct: 151 EEVTEEEEETDKEKAKAKA 169
>gnl|CDD|234764 PRK00442, tatA, twin arginine translocase protein A; Provisional.
Length = 92
Score = 26.8 bits (59), Expect = 9.9
Identities = 11/38 (28%), Positives = 13/38 (34%), Gaps = 1/38 (2%)
Query: 452 PVEAPAAPVDTPVTPVASAPPTPAET-PGAPEPVPSPA 488
P E PA P +AP T G + V P
Sbjct: 52 PAEQPAPPAQPVPPVQNTAPLNQPHTIDGQAQKVEEPQ 89
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.311 0.126 0.372
Gapped
Lambda K H
0.267 0.0630 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 26,241,910
Number of extensions: 2559371
Number of successful extensions: 14621
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7725
Number of HSP's successfully gapped: 1791
Length of query: 518
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 417
Effective length of database: 6,457,848
Effective search space: 2692922616
Effective search space used: 2692922616
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 61 (27.5 bits)