RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7288
(518 letters)
>1ll2_A Glycogenin-1; protein-substrate complex, beta-alpha-beta
rossman-like NUCL binding fold, DXD motif, non-proline
CIS peptide bond, TRAN; HET: UPG; 1.90A {Oryctolagus
cuniculus} SCOP: c.68.1.14 PDB: 1ll3_A 1ll0_A 1zcv_A
1zcu_A 1zdf_A* 1zcy_A 1zdg_A*
Length = 333
Score = 211 bits (538), Expect = 2e-64
Identities = 124/365 (33%), Positives = 175/365 (47%), Gaps = 42/365 (11%)
Query: 4 VTGTAWVTLATNDSYALGALVVANSLKRVNTVHDLAILITPGVTLAMKNELLKVFNFVKE 63
+T A+VTL TND+YA GALV+ +SLK+ T LA+L TP V+ M+ L VF+ V
Sbjct: 1 MTDQAFVTLTTNDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVFDEVIT 60
Query: 64 VDVFDSRDETNLRLLSRPDLGITFTKIHAWRLTQYSKCVFLDADVLIVQNCDELFDREEL 123
VD+ DS D +L L+ RP+LG+T TK+H W LTQYSKCVF+DAD L++ N D+LF+REEL
Sbjct: 61 VDILDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFEREEL 120
Query: 124 SAAPDAGWPDCFNSGVFVFKPSESTYNALVEFALVNGSFDDATRQLQKPLNMRNLPKSFF 183
SAAPD GWPDCFNSGVFV++PS TYN L+ A GSFD + L
Sbjct: 121 SAAPDPGWPDCFNSGVFVYQPSVETYNQLLHVASEQGSFDGGDQGLLNTFFNSWATTDIR 180
Query: 184 QPPSTGSRSPSVSSISHSRENSADSAFGTSTITSTSSSVSGGGLQIAH---------PRA 234
+ S+S S+ A G ++ H
Sbjct: 181 KHLPFIYNLSSISIYSYLPAFKAF----------------GANAKVVHFLGQTKPWNYTY 224
Query: 235 HSSPASLQQTYASAQQQHQQHLKQ-RSYDITTVLDELGPLPPGWEQARTAEGQVYYLKGV 293
+ S++ H Q L T+V+ L +
Sbjct: 225 DTKTKSVRSEGHDPTMTHPQFLNVWWDIFTTSVVPLLQQFGLVQDTCSYQ---------- 274
Query: 294 LFMYTRLQAGLARALAQVPIGTPISAEQLAYEDHIHRQHWEEGHIDYLGKDSWDNIWKKI 353
++ A++ + +G + Q ++ WE+G DY+G DS+DNI KK+
Sbjct: 275 ------HVEDVSGAVSHLSLGETPATTQPFVSSEERKERWEQGQADYMGADSFDNIKKKL 328
Query: 354 SQTIE 358
++
Sbjct: 329 DTYLQ 333
>3u2u_A Glycogenin-1, GN-1, GN1; structural genomics, structural genomics
consortium, SGC, transferase, glycosyltransferase,
glycogen biosynthesis; HET: GLC UDP; 1.45A {Homo
sapiens} PDB: 3t7n_A* 3t7o_A* 3t7m_A* 3u2v_A* 3u2x_A*
3u2t_A 3rmv_A* 3rmw_A* 3u2w_A* 3qvb_A* 3q4s_A* 1zct_A*
3v8y_A 3v8z_A* 3usr_A 3v90_A 3v91_A* 3usq_A
Length = 263
Score = 168 bits (426), Expect = 8e-49
Identities = 94/156 (60%), Positives = 116/156 (74%)
Query: 8 AWVTLATNDSYALGALVVANSLKRVNTVHDLAILITPGVTLAMKNELLKVFNFVKEVDVF 67
A+VTL TND+YA GALV+ +SLK+ T L +L TP V+ +M+ L VF+ V VDV
Sbjct: 6 AFVTLTTNDAYAKGALVLGSSLKQHRTTRRLVVLATPQVSDSMRKVLETVFDEVIMVDVL 65
Query: 68 DSRDETNLRLLSRPDLGITFTKIHAWRLTQYSKCVFLDADVLIVQNCDELFDREELSAAP 127
DS D +L L+ RP+LG+T TK+H W LTQYSKCVF+DAD L++ N D+LFDREELSAAP
Sbjct: 66 DSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFDREELSAAP 125
Query: 128 DAGWPDCFNSGVFVFKPSESTYNALVEFALVNGSFD 163
D GWPDCFNSGVFV++PS TYN L+ A GSFD
Sbjct: 126 DPGWPDCFNSGVFVYQPSVETYNQLLHLASEQGSFD 161
>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A
{Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A*
1ss9_A*
Length = 311
Score = 62.9 bits (153), Expect = 5e-11
Identities = 30/160 (18%), Positives = 59/160 (36%), Gaps = 30/160 (18%)
Query: 10 VTLATNDSYALGALVVANSLKRVNTVHDLAI-LITPGVTLAMKNELLKVF-NFVKEVDVF 67
+ A +D+YA V A S++ + ++ ++ G++ A + + +
Sbjct: 3 IVFAADDNYAAYLCVAAKSVEAAHPDTEIRFHVLDAGISEANRAAVAANLRGGGGNIRFI 62
Query: 68 DSRDETNLRLLSRPDLGITFTKIHAWRL------TQYSKCVFLDADVLIVQNCDELFDRE 121
D + + I+ T +A RL K ++LD DVL+ + L+D +
Sbjct: 63 DV-NPEDFAGFPLNIRHISIT-TYA-RLKLGEYIADCDKVLYLDIDVLVRDSLTPLWDTD 119
Query: 122 ----ELSAAPDAGW--------------PDC-FNSGVFVF 142
L A+ D + FN+GV +
Sbjct: 120 LGDNWLGASIDLFVERQEGYKQKIGMADGEYYFNAGVLLI 159
>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology,
midwest center for structu genomics, MCSG, putative
glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus
prevotii}
Length = 276
Score = 62.2 bits (151), Expect = 6e-11
Identities = 32/184 (17%), Positives = 63/184 (34%), Gaps = 36/184 (19%)
Query: 10 VTLATNDSYALGALVVANSLKRVNTVHDLAI-LITPGVTLAMKNELLKVF-NFVKEVDVF 67
+ L +++Y V+ S+ N + LI ++ +L + F +
Sbjct: 8 LLLTLDENYIPQMKVLMTSIYINNPGRIFDVYLIHSRISEDKLKDLGEDLKKFSYTLYPI 67
Query: 68 DSRDETNLRLLSRPDLGITFTKIHAWRL-------TQYSKCVFLDADVLIVQNCDELFDR 120
+ D+ L S + + K +RL + ++LD D+L++ D+L
Sbjct: 68 RATDD----LFSFAKVTDRYPKEMYYRLLAGEFLPENLGEILYLDPDMLVINPLDDLLRT 123
Query: 121 E----ELSAAPDAGWPD---------------CFNSGVFVFKPS----ESTYNALVEFAL 157
+ L+AA G D +NSG+ + E + + F
Sbjct: 124 DISDYILAAASHTGKTDMANNVNRIRLGTDTDYYNSGLLLINLKRAREEIDPDEIFSFVE 183
Query: 158 VNGS 161
N
Sbjct: 184 DNHM 187
>3kys_B YAP65, 65 kDa YES-associated protein; immunoglobulin-like fold,
activator, disease mutation, DNA- binding, nucleus,
phosphoprotein, transcription; 2.80A {Homo sapiens} PDB:
3jua_B
Length = 125
Score = 56.9 bits (136), Expect = 3e-10
Identities = 36/115 (31%), Positives = 44/115 (38%), Gaps = 35/115 (30%)
Query: 163 DDATRQLQKPLNMRNLPKSFFQPPSTGSRSPSVSSISHSRENSADSAFGTSTITSTSSSV 222
A P+ +R LP SFF+PP S HSR+ S D+
Sbjct: 30 KTANVPQTVPMRLRKLPDSFFKPPEPKS---------HSRQASTDAGTA----------- 69
Query: 223 SGGGLQIAHPRAHSSPASLQQTYASAQ-------------QQHQQHLKQRSYDIT 264
G L H RAHSSPASLQ S QHL+Q S++I
Sbjct: 70 --GALTPQHVRAHSSPASLQLGAVSPGTLTPTGVVSGPAATPTAQHLRQSSFEIP 122
>3gdb_A Endo-D, putative uncharacterized protein SPR0440;
alpha-beta-barrels, cell WALL, peptidoglycan-anchor,
secreted, hydrolase; HET: PGE; 1.87A {Streptococcus
pneumoniae} PDB: 2xqx_A
Length = 937
Score = 61.9 bits (149), Expect = 3e-10
Identities = 25/133 (18%), Positives = 38/133 (28%), Gaps = 2/133 (1%)
Query: 384 TVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTP 443
+ + VP + + T A E A + + T
Sbjct: 13 QLENLYFQGEETAVPENSGANTELVSGESEHSTNEADKQNEGEHARENKLEKAEGVATAS 72
Query: 444 V-ESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGA-PEPVPSPAAPAPVETPSVPAE 501
SPA++ A + P A AETP A +P A E + E
Sbjct: 73 ETASPASNEAATTETAEAASAAKPEEKASEVVAETPSAEAKPKSDKETEAKPEATNQGDE 132
Query: 502 PTPTASPVQTSQP 514
P A +T +
Sbjct: 133 SKPAAEANKTEKE 145
Score = 51.9 bits (123), Expect = 4e-07
Identities = 12/120 (10%), Positives = 25/120 (20%), Gaps = 3/120 (2%)
Query: 399 VSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAA 458
+ + + + + + + V +
Sbjct: 14 LENLYFQGEETAVPENSGANTELVSGESEHSTNEADKQNEGEHARENKLEKAEGVATASE 73
Query: 459 PVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQTSQPCAST 518
A+ A + PE A+ ETPS A+P +
Sbjct: 74 TASPASNEAATTETAEAASAAKPEE---KASEVVAETPSAEAKPKSDKETEAKPEATNQG 130
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid
cyclase fold, DDXXXXD motif, NDXXSXXXE MOT
methylisoborneol biosynthesis; HET: GST; 1.80A
{Streptomyces coelicolor} PDB: 3v1x_A*
Length = 433
Score = 57.8 bits (139), Expect = 4e-09
Identities = 17/106 (16%), Positives = 24/106 (22%), Gaps = 5/106 (4%)
Query: 403 PAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVD- 461
S P+ T + + + PV P P A P
Sbjct: 9 HHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPPDTVTGD 68
Query: 462 ---TPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTP 504
+ + P T + P P AP P P
Sbjct: 69 SVLQRILRGPTGPGTTSLAPAVR-YGRQPGPEAPASAPPAAGRAVP 113
Score = 47.4 bits (112), Expect = 7e-06
Identities = 22/123 (17%), Positives = 27/123 (21%), Gaps = 6/123 (4%)
Query: 380 SSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPS 439
P + ++ S A PPV P PAP P A P S
Sbjct: 13 GLVPRGSHMVIPSASVTSAASDFLAALHPPVTVP---DPAPPPPPAPAAGNPPDTVTGDS 69
Query: 440 PTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVP 499
+ + P PA P A PV P
Sbjct: 70 VLQRILRGPTGPG---TTSLAPAVRYGRQPGPEAPASAPPAAGRAVPGLYHHPVPEPDPV 126
Query: 500 AEP 502
Sbjct: 127 RVE 129
Score = 46.3 bits (109), Expect = 2e-05
Identities = 22/125 (17%), Positives = 32/125 (25%), Gaps = 2/125 (1%)
Query: 354 SQTIEPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSP-VPAPSTPPVAT 412
S ++ +S P +P P P PA PP
Sbjct: 6 HHHHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPPDTV 65
Query: 413 PTETTPAPV-STPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAP 471
++ + PT S A E+PA++ P A P P
Sbjct: 66 TGDSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAVPGLYHHPVPEPDP 125
Query: 472 PTPAE 476
E
Sbjct: 126 VRVEE 130
Score = 45.9 bits (108), Expect = 2e-05
Identities = 25/139 (17%), Positives = 33/139 (23%), Gaps = 5/139 (3%)
Query: 360 SKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPA 419
S S +V P VP P+ PP P P
Sbjct: 3 SSHHHHHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPP 62
Query: 420 PVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPG 479
+ ++ + P TT S A + P P A+ P
Sbjct: 63 D-TVTGDSVLQRILRGPTGPGTT---SLAPAVRYGRQPGPEAPASAPPAAGRAVPGL-YH 117
Query: 480 APEPVPSPAAPAPVETPSV 498
P P P P V
Sbjct: 118 HPVPEPDPVRVEEVSRRIK 136
Score = 40.9 bits (95), Expect = 8e-04
Identities = 14/104 (13%), Positives = 21/104 (20%), Gaps = 7/104 (6%)
Query: 417 TPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAE 476
+ + + A PV P P P A PP
Sbjct: 8 HHHSSGLVPRGSHMVI-PSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPPDTVT 66
Query: 477 TPGAPEPVPS------PAAPAPVETPSVPAEPTPTASPVQTSQP 514
+ + + AP P AS +
Sbjct: 67 GDSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGR 110
Score = 40.9 bits (95), Expect = 8e-04
Identities = 12/85 (14%), Positives = 20/85 (23%), Gaps = 1/85 (1%)
Query: 430 ASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAA 489
+S S P P + + + + P P P +
Sbjct: 3 SSHHHHHHSSGLVP-RGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNP 61
Query: 490 PAPVETPSVPAEPTPTASPVQTSQP 514
P V SV + T+
Sbjct: 62 PDTVTGDSVLQRILRGPTGPGTTSL 86
Score = 35.1 bits (80), Expect = 0.045
Identities = 12/73 (16%), Positives = 15/73 (20%), Gaps = 4/73 (5%)
Query: 446 SPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPT 505
S V P AS ++ A P P P P P
Sbjct: 4 SHHHHHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPV----TVPDPAPPPPPAPAAG 59
Query: 506 ASPVQTSQPCAST 518
P +
Sbjct: 60 NPPDTVTGDSVLQ 72
Score = 28.2 bits (62), Expect = 8.6
Identities = 7/51 (13%), Positives = 12/51 (23%)
Query: 467 VASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQTSQPCAS 517
+ S+ + G P+ T + PV P
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPP 51
>3l4h_A E3 ubiquitin-protein ligase HECW1; E3 ligase, WW domain,
UBL-conjugation pathway, structural GE structural
genomics consortium, SGC, coiled coil; HET: MSE; 1.80A
{Homo sapiens}
Length = 109
Score = 49.6 bits (118), Expect = 7e-08
Identities = 13/66 (19%), Positives = 25/66 (37%), Gaps = 5/66 (7%)
Query: 230 AHPRAHSSPASLQQTYASAQQ-----QHQQHLKQRSYDITTVLDELGPLPPGWEQARTAE 284
+ R +S L+ ++ + QH + I D LP GWE +
Sbjct: 25 SAYRVFTSSTCLKHMILKVRRDARNFERYQHNRDLVNFINMFADTRLELPRGWEIKTDQQ 84
Query: 285 GQVYYL 290
G+ +++
Sbjct: 85 GKSFFV 90
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription,
mRNA, multiprotein complex; HET: UTP; 2.30A
{Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A
1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A*
1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A*
1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ...
Length = 1733
Score = 53.9 bits (129), Expect = 1e-07
Identities = 38/141 (26%), Positives = 64/141 (45%), Gaps = 9/141 (6%)
Query: 383 PTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTT 442
PT P P S P SP +P++P + + + + + T+ + +P SPT+
Sbjct: 1558 PTSPSYSPT-SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1616
Query: 443 PVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEP 502
P SP ++P +P +P +P +P S P +P+ +P +P P+ A +P P P
Sbjct: 1617 PSYSP--TSPSYSPTSPSYSPTSPSYS-PTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSP 1673
Query: 503 T-----PTASPVQTSQPCAST 518
+ P+ SP S S
Sbjct: 1674 SYSPTSPSYSPTSPSYSPTSP 1694
Score = 51.2 bits (122), Expect = 8e-07
Identities = 38/151 (25%), Positives = 63/151 (41%), Gaps = 7/151 (4%)
Query: 352 KISQTIEPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVA 411
S T P + S T+ + S PT P P S P SP +P++P +
Sbjct: 1583 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSPTSPSYS 1641
Query: 412 TPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAA-----STPVEAPAAPVDTPVTP 466
+ + + + T+ A +P SPT+P SP + ++P +P +P +P +P
Sbjct: 1642 PTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSP 1701
Query: 467 VASAPPTPAETPGAPEPVPSPAAPAPVETPS 497
S P +P +PG+P P E +
Sbjct: 1702 SYS-PTSPGYSPGSPAYSPKQDEQKHNENEN 1731
Score = 49.7 bits (118), Expect = 2e-06
Identities = 42/187 (22%), Positives = 71/187 (37%), Gaps = 26/187 (13%)
Query: 354 SQTIEPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATP 413
S P+ P + S S ++ + P+ P+ S SP +P +
Sbjct: 1539 SPGFSPTSPTYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1598
Query: 414 TETTPAPVSTPTETAAASPV---AAPVPSPTTPVESPA-----ASTPVEAPAAPVDTPVT 465
+ T+P+ T + SP +P SPT+P SP ++P +P +P +P +
Sbjct: 1599 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1658
Query: 466 PVASA------PPTPAETPGAPEPVPSPAAPAPVETPSVPAEPT------------PTAS 507
P S P +P+ +P +P P+ + +P P P+ P S
Sbjct: 1659 PAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPGYSPGSPAYS 1718
Query: 508 PVQTSQP 514
P Q Q
Sbjct: 1719 PKQDEQK 1725
Score = 48.9 bits (116), Expect = 4e-06
Identities = 38/174 (21%), Positives = 65/174 (37%), Gaps = 25/174 (14%)
Query: 358 EPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTP------PVA 411
+ P SP +P++P P
Sbjct: 1501 NDAMAGGFTAYGGADYGEATSPFGAYGEAPTSPGFG----VSSPGFSPTSPTYSPTSPAY 1556
Query: 412 TPTETTPAPVS---TPTETAAASPVAA------PVPSPTTPVESPAASTPVEAPAAPVDT 462
+PT + +P S +PT + SP + P SPT+P SP ++P +P +P +
Sbjct: 1557 SPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTSPSYSPTSPSYSP--TSPSYSPTSPSYS 1613
Query: 463 PVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEP--TPTASPVQTSQP 514
P +P S P +P+ +P +P P+ + +P P P +PT+ + P
Sbjct: 1614 PTSPSYS-PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSP 1666
Score = 48.2 bits (114), Expect = 5e-06
Identities = 36/179 (20%), Positives = 65/179 (36%), Gaps = 15/179 (8%)
Query: 351 KKISQTIEPSKPPAAE----PSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPS 406
+ + + + K E T + ++ V + + + + A
Sbjct: 1448 ESLVKYMPEQKITEIEDGQDGGVTPYSNESGLVNADLDVKDELMFSPLVDSGSNDAMAGG 1507
Query: 407 TPPVATPTETTPAPVSTPTETAAASP---VAAPVPSPTTPVESPAASTPVEAPAAPVDTP 463
A SP V++P SPT+P SP ++P +P +P +P
Sbjct: 1508 FTAYGGADYGEATSPFGAYGEAPTSPGFGVSSPGFSPTSPTYSP--TSPAYSPTSPSYSP 1565
Query: 464 VTPVASAPPTPAETPGAPE-----PVPSPAAPAPVETPSVPAEPTPTASPVQTSQPCAS 517
+P S P +P+ +P +P P SP +P+ T + +P+ SP S S
Sbjct: 1566 TSPSYS-PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1623
Score = 48.2 bits (114), Expect = 7e-06
Identities = 40/182 (21%), Positives = 72/182 (39%), Gaps = 12/182 (6%)
Query: 342 GKDSWDNIWKKISQTIEPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSP 401
G + N ++ ++ P + + A+
Sbjct: 1469 GVTPYSNESGLVNADLDVKDELMFSPLVDSGSNDAMAGGFTAYGGADYGEATSPFGAYGE 1528
Query: 402 VPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVD 461
P V++P + +P +PT + A SP +P SPT+P SP + P +P +P
Sbjct: 1529 APTSPGFGVSSPGFSPTSPTYSPT-SPAYSP-TSPSYSPTSPSYSPTS--PSYSPTSPSY 1584
Query: 462 TPVTPVASAPPTPAETPGAPEPVPSPAAPA-----PVETPSVPAEPTPTASPVQTSQPCA 516
+P +P S P +P+ +P +P SP +P+ P +P+ P+ + S TS +
Sbjct: 1585 SPTSPSYS-PTSPSYSPTSPSY--SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1641
Query: 517 ST 518
T
Sbjct: 1642 PT 1643
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription,
multi-protein complex, DNA- binding, magnesium; 3.65A
{Schizosaccharomyces pombe}
Length = 1752
Score = 52.0 bits (124), Expect = 4e-07
Identities = 51/167 (30%), Positives = 78/167 (46%), Gaps = 23/167 (13%)
Query: 359 PSKPPAAEPSQTTSESTEKKESSP---PTVPEVKPAASVEPVPVSPVPAPSTP------P 409
+ P + S S S SSP PT P P S P SP +P++P P
Sbjct: 1553 LTSPSYSPSSPGYSTSPAYMPSSPSYSPTSPSYSPT-SPSYSPTSPSYSPTSPSYSATSP 1611
Query: 410 VATPTETTPAPVS---TPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTP 466
+PT + +P S +PT + SP +P SPT+P SP ++P +P +P +P +P
Sbjct: 1612 SYSPTSPSYSPTSPSYSPTSPSY-SP-TSPSYSPTSPSYSP--TSPSYSPTSPSYSPTSP 1667
Query: 467 VASAPPTPAETPGAPEPVP-----SPAAPAPVETPSVPAEPTPTASP 508
S P +P+ +P +P P SP +P+ T + +P+ SP
Sbjct: 1668 SYS-PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1713
Score = 51.6 bits (123), Expect = 5e-07
Identities = 36/127 (28%), Positives = 61/127 (48%), Gaps = 9/127 (7%)
Query: 383 PTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTP-TETAAASPVAAPVPSPT 441
PT P P + P SP +P T P +PT + +P S + T+ + +P SPT
Sbjct: 1629 PTSPSYSPTSPSYS-PTSPSYSP-TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1686
Query: 442 TPVESPAA-----STPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETP 496
+P SP + ++P +P +P +P +P S P +P+ +P +P P+ + +P
Sbjct: 1687 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS-PTSPSYSPTSPSYSPTSPSYSPTSPS 1745
Query: 497 SVPAEPT 503
P P+
Sbjct: 1746 YSPTSPS 1752
Score = 46.2 bits (109), Expect = 2e-05
Identities = 33/164 (20%), Positives = 63/164 (38%), Gaps = 13/164 (7%)
Query: 367 PSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTE 426
P + + P V+ + + + P T + +P S
Sbjct: 1507 PLVQGGSEGREGFGDYGLLGAASPYKGVQSPGYTSPFSSAMSPGYGLTSPSYSPSSPGYS 1566
Query: 427 TAAASPVAAPVPSPTTPVESP-----AASTPVEAPAAPVDTPVTPVAS------APPTPA 475
T+ A ++P SPT+P SP + ++P +P +P + +P S +P +P+
Sbjct: 1567 TSPAYMPSSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSATSPSYSPTSPSYSPTSPS 1626
Query: 476 ETPGAPEPVPSPAAPAPVETPSVPAEPT--PTASPVQTSQPCAS 517
+P +P P+ + +P P P+ PT+ + P S
Sbjct: 1627 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1670
Score = 45.1 bits (106), Expect = 5e-05
Identities = 36/147 (24%), Positives = 67/147 (45%), Gaps = 11/147 (7%)
Query: 354 SQTIEPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATP 413
S + P+ P + S + S ++ + P+ P+ S SP +P +
Sbjct: 1617 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1676
Query: 414 TETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPT 473
+ T+P+ T + SP SPT+P SP ++P +P +P +P +P S P +
Sbjct: 1677 SPTSPSYSPTSPSYSPTSPSY----SPTSPSYSP--TSPSYSPTSPSYSPTSPSYS-PTS 1729
Query: 474 PAETPGAPEPVPSPAAPAPVETPSVPA 500
P+ +P +P P+ +P +P+ P+
Sbjct: 1730 PSYSPTSPSYSPT----SPSYSPTSPS 1752
Score = 33.1 bits (75), Expect = 0.27
Identities = 25/117 (21%), Positives = 40/117 (34%), Gaps = 7/117 (5%)
Query: 407 TPPVATPTETTPAPVSTPTETAAASPVAAPVPSP--TTPVESPAASTP--VEAPAAPVDT 462
TP S ++ A SP E + A+P
Sbjct: 1474 GTSQLPEGAGTPYERSPMVDSGFVGSPDAAAFSPLVQGGSEGREGFGDYGLLGAASPYKG 1533
Query: 463 PVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPT-PTASPVQTSQPCAST 518
+P ++P + A +PG PS + +P + S P+ P+ SP TS + T
Sbjct: 1534 VQSPGYTSPFSSAMSPGYGLTSPSYSPSSPGYSTSPAYMPSSPSYSP--TSPSYSPT 1588
>1i5h_W Rnedd4, ubiquitin ligase NEDD4; NEDD4, WW domains, ENAC, PY motif,
liddle syndrome, proline-rich, ligase; NMR {Rattus
norvegicus} SCOP: b.72.1.1 PDB: 1yiu_A 2jo9_A 2joc_A*
Length = 50
Score = 44.9 bits (107), Expect = 9e-07
Identities = 11/22 (50%), Positives = 18/22 (81%)
Query: 268 DELGPLPPGWEQARTAEGQVYY 289
++LGPLPPGWE+ +G+V++
Sbjct: 7 NDLGPLPPGWEERTHTDGRVFF 28
>2kyk_A E3 ubiquitin-protein ligase itchy homolog; LMP2A, PY motif, WW
domain; NMR {Homo sapiens}
Length = 39
Score = 44.0 bits (105), Expect = 1e-06
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 269 ELGPLPPGWEQARTAEGQVYY 289
+GPLPPGWE+ G++YY
Sbjct: 3 AMGPLPPGWERRVDNMGRIYY 23
>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex,
inter-protein beta sheet, protein-protein, metal
transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A
{Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A
Length = 229
Score = 48.6 bits (115), Expect = 1e-06
Identities = 28/140 (20%), Positives = 38/140 (27%)
Query: 363 PAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVS 422
P + P +V V PA P V P P P P P P
Sbjct: 15 PRGSHMSVHQVIELPAPAQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKE 74
Query: 423 TPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPE 482
P P P P P V+ + P + + T +
Sbjct: 75 APVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESRPASPFENTAPARLTSSTATAATSK 134
Query: 483 PVPSPAAPAPVETPSVPAEP 502
PV S A+ + + P P
Sbjct: 135 PVTSVASGPRALSRNQPQYP 154
Score = 45.5 bits (107), Expect = 1e-05
Identities = 23/129 (17%), Positives = 37/129 (28%), Gaps = 1/129 (0%)
Query: 362 PPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVP-VSPVPAPSTPPVATPTETTPAP 420
P A+P T + E P +P EP P P P P V + P P
Sbjct: 29 PAPAQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKP 88
Query: 421 VSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGA 480
P + P P + P + P ++ + ++ +
Sbjct: 89 KPKPVKKVQEQPKRDVKPVESRPASPFENTAPARLTSSTATAATSKPVTSVASGPRALSR 148
Query: 481 PEPVPSPAA 489
+P A
Sbjct: 149 NQPQYPARA 157
Score = 44.7 bits (105), Expect = 2e-05
Identities = 17/141 (12%), Positives = 23/141 (16%)
Query: 374 STEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPV 433
S+ + SV V P PA P +
Sbjct: 2 SSHHHHHHSSGLVPRGSHMSVHQVIELPAPAQPISVTMVTPADLEPPQAVQPPPEPVVEP 61
Query: 434 AAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPV 493
P + P P P P AP
Sbjct: 62 EPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESRPASPFENTAPA 121
Query: 494 ETPSVPAEPTPTASPVQTSQP 514
S A + +
Sbjct: 122 RLTSSTATAATSKPVTSVASG 142
>2l4j_A YES-associated protein 2 (YAP2); WW domain, medaka, transcription;
NMR {Oryzias latipes}
Length = 46
Score = 43.8 bits (104), Expect = 2e-06
Identities = 14/22 (63%), Positives = 16/22 (72%)
Query: 268 DELGPLPPGWEQARTAEGQVYY 289
GPLP GWEQA T EG++YY
Sbjct: 7 PASGPLPEGWEQAITPEGEIYY 28
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 49.5 bits (117), Expect = 3e-06
Identities = 37/215 (17%), Positives = 71/215 (33%), Gaps = 73/215 (33%)
Query: 9 WVTLATNDSYALGALVVANSL--KRVN----TVHDLAILITPGVT--LAMKNELLKVFNF 60
W + +D + + SL K+ ++ + + + + A+ ++ +N
Sbjct: 396 WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNI 455
Query: 61 VKEVDVFDSRDETNLRLLSRPDLGITFTKI--HAWRLTQYSKC-----VFLD-------- 105
K FDS D L D ++ I H + + VFLD
Sbjct: 456 PKT---FDSDDLIPPYL----D-QYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKI 507
Query: 106 -------------ADVL---------IVQNCDELFDREELSAAPDAGWPDCFNSGVFVFK 143
+ L I N D ++R ++A D F+ K
Sbjct: 508 RHDSTAWNASGSILNTLQQLKFYKPYICDN-DPKYERL-VNAILD-----------FLPK 554
Query: 144 PSESTYNA----LVEFALVN---GSFDDATRQLQK 171
E+ + L+ AL+ F++A +Q+Q+
Sbjct: 555 IEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQR 589
Score = 43.3 bits (101), Expect = 2e-04
Identities = 59/387 (15%), Positives = 111/387 (28%), Gaps = 121/387 (31%)
Query: 52 NELLKVF--NFVKEVDVFDSRDETNLRLLSRPDLGITFTKIHA--------WRLTQYSKC 101
++L VF FV D D +D +LS+ ++ A W L +
Sbjct: 19 KDILSVFEDAFVDNFDCKDVQDMPK-SILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEE 77
Query: 102 V---FLDADVLIVQNCDELFDR-EELSAAPDAGWPDCFNSGVFVFKPSESTYNALVEFAL 157
+ F++ +VL N L + P + + + YN FA
Sbjct: 78 MVQKFVE-EVL-RINYKFLMSPIKTEQRQP-SMMTRMYIEQR------DRLYNDNQVFAK 128
Query: 158 VNGSFDDATRQLQKPL-NMRNLP-----------KSFF-----QPPSTGSRSP-SVSSIS 199
N S +L++ L +R K++ + + ++
Sbjct: 129 YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN 188
Query: 200 HSRENSADSAFGTSTITSTSSSVSGGGLQIAHPRAHSSPASLQQTYASAQQQHQQHLKQR 259
NS ++ + + + ++++ S Q + ++ LK +
Sbjct: 189 LKNCNSPETVL--EMLQKLLYQIDPNWTSRS-----DHSSNIKLRIHSIQAELRRLLKSK 241
Query: 260 SY-------D------------------ITT----VLDELGPLPPGWEQARTAEGQVYYL 290
Y +TT V D L T ++
Sbjct: 242 PYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSA------ATTTHISLDHHS 295
Query: 291 KGVLFMYTRLQAGLARAL--------AQVPIGTP--IS--AEQLAYEDHIHRQHWEEGHI 338
+++ L + L +V P +S AE + D +
Sbjct: 296 MT--LTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESI--RDGLAT-------- 343
Query: 339 DYLGKDSWDNIWK-----KISQTIEPS 360
WDN WK K++ IE S
Sbjct: 344 -------WDN-WKHVNCDKLTTIIESS 362
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay,
ribosomal protein,hydrolase; 9.50A {Saccharomyces
cerevisiae}
Length = 611
Score = 48.6 bits (116), Expect = 4e-06
Identities = 19/144 (13%), Positives = 34/144 (23%), Gaps = 2/144 (1%)
Query: 324 YEDHIHRQHWEEGHIDYLGKDSWDNIWKKISQTIEPSKPPAAEPSQTTSESTEKKE-SSP 382
D + H E DYL D ++ + + + + + +
Sbjct: 9 GADDMPDFHDEGEFDDYLNDDEYELMNEVFPTLKAQLQDYQGWDNLSLKLALFDNNFDLE 68
Query: 383 PTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTT 442
T+ E+K + P P+ A + T +S S
Sbjct: 69 STLAELKKTLKKKKTPKKPIAAANGSANVTQKL-ANISISQQRPNDRLPDWLDEEESEGE 127
Query: 443 PVESPAASTPVEAPAAPVDTPVTP 466
A P P
Sbjct: 128 RNGEEANDEKTVQRYYKTTVPTKP 151
>2law_A Yorkie homolog; YAP, SMAD1, CDK, signal transduction, signaling
protein-TRAN complex; NMR {Homo sapiens}
Length = 38
Score = 42.5 bits (101), Expect = 5e-06
Identities = 13/20 (65%), Positives = 17/20 (85%)
Query: 271 GPLPPGWEQARTAEGQVYYL 290
GPLP GWEQA T +G++YY+
Sbjct: 5 GPLPDGWEQAMTQDGEIYYI 24
>2ysd_A Membrane-associated guanylate kinase, WW and PDZ domain-containing
protein 1; MAGI1, WW domain, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1
Length = 57
Score = 42.8 bits (101), Expect = 5e-06
Identities = 13/22 (59%), Positives = 15/22 (68%)
Query: 268 DELGPLPPGWEQARTAEGQVYY 289
D LGPLP WE A T G+VY+
Sbjct: 10 DNLGPLPENWEMAYTENGEVYF 31
>2kpz_A E3 ubiquitin-protein ligase NEDD4; WW domain, HTLV1, NEDD4, human
modular domain, complex, HOST interaction, ligase; NMR
{Homo sapiens} PDB: 2kq0_A 2laj_A*
Length = 49
Score = 42.7 bits (101), Expect = 5e-06
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 268 DELGPLPPGWEQARTAEGQVYY 289
E G LP GWE G+ ++
Sbjct: 8 IEQGFLPKGWEVRHAPNGRPFF 29
>2ysf_A E3 ubiquitin-protein ligase itchy homolog; AIP4, NAPP1, WW domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.22.1.1
Length = 40
Score = 42.2 bits (100), Expect = 6e-06
Identities = 8/22 (36%), Positives = 10/22 (45%)
Query: 268 DELGPLPPGWEQARTAEGQVYY 289
LP GWE T +G Y+
Sbjct: 3 SGSSGLPEGWEMRFTVDGIPYF 24
>1ymz_A CC45; artificial protein, computational design, unknown function;
NMR {Synthetic} SCOP: k.22.1.1
Length = 43
Score = 42.2 bits (100), Expect = 7e-06
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 268 DELGPLPPGWEQARTAEGQVYY 289
PLPPGWE+ EG+VYY
Sbjct: 4 GRSMPLPPGWERRTDVEGKVYY 25
>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane
fusion, viral P glycoprotein B, HSV-1, membrane; HET:
NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A*
3nwd_A*
Length = 703
Score = 47.6 bits (113), Expect = 8e-06
Identities = 17/95 (17%), Positives = 25/95 (26%), Gaps = 2/95 (2%)
Query: 418 PAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAET 477
PA ++P A+ A P TP + P P P PP PA
Sbjct: 2 PAAPTSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPK--KNKKPKNPTPPRPAGD 59
Query: 478 PGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQTS 512
+ + + + P T
Sbjct: 60 NATVAAGHATLREHLRDIKAENTDANFYVCPPPTG 94
Score = 44.9 bits (106), Expect = 5e-05
Identities = 18/93 (19%), Positives = 23/93 (24%), Gaps = 1/93 (1%)
Query: 389 KPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPA 448
PAA P A T PA + PT P +PT P +
Sbjct: 1 DPAAPTSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKP-KNPTPPRPAGD 59
Query: 449 ASTPVEAPAAPVDTPVTPVASAPPTPAETPGAP 481
+T A + A P
Sbjct: 60 NATVAAGHATLREHLRDIKAENTDANFYVCPPP 92
Score = 44.9 bits (106), Expect = 6e-05
Identities = 26/97 (26%), Positives = 33/97 (34%), Gaps = 2/97 (2%)
Query: 398 PVSPVPAPSTPPVATPTETTPAPVSTPTETA-AASPVAAPVPSPTTPVESPAASTPVEAP 456
P +P +P TP VA T+ +TP A A+P P P ++P P
Sbjct: 2 PAAP-TSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDN 60
Query: 457 AAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPV 493
A T AE A V P A V
Sbjct: 61 ATVAAGHATLREHLRDIKAENTDANFYVCPPPTGATV 97
Score = 43.8 bits (103), Expect = 1e-04
Identities = 19/100 (19%), Positives = 25/100 (25%)
Query: 404 APSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTP 463
AP++P T A P A + AAP P + PA T
Sbjct: 4 APTSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDNATV 63
Query: 464 VTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPT 503
A+ + P P V E
Sbjct: 64 AAGHATLREHLRDIKAENTDANFYVCPPPTGATVVQFEQP 103
Score = 43.4 bits (102), Expect = 2e-04
Identities = 16/68 (23%), Positives = 19/68 (27%)
Query: 447 PAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTA 506
PAA T P T A P P AP P P + P+ P A
Sbjct: 2 PAAPTSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDNA 61
Query: 507 SPVQTSQP 514
+
Sbjct: 62 TVAAGHAT 69
Score = 42.6 bits (100), Expect = 3e-04
Identities = 22/81 (27%), Positives = 26/81 (32%), Gaps = 5/81 (6%)
Query: 434 AAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPV 493
AAP SP TP + A PA TP P A PT P + +P P P
Sbjct: 3 AAP-TSPGTPGVAAATQAANGGPA----TPAPPALGAAPTGDPKPKKNKKPKNPTPPRPA 57
Query: 494 ETPSVPAEPTPTASPVQTSQP 514
+ A T
Sbjct: 58 GDNATVAAGHATLREHLRDIK 78
Score = 39.6 bits (92), Expect = 0.002
Identities = 18/98 (18%), Positives = 28/98 (28%), Gaps = 2/98 (2%)
Query: 358 EPSKPPA-AEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPV-PAPSTPPVATPTE 415
+P+ P + P + + P P + A + +P P P TPP
Sbjct: 1 DPAAPTSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDN 60
Query: 416 TTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPV 453
T A A + P +T V
Sbjct: 61 ATVAAGHATLREHLRDIKAENTDANFYVCPPPTGATVV 98
Score = 37.6 bits (87), Expect = 0.010
Identities = 13/50 (26%), Positives = 20/50 (40%)
Query: 469 SAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQTSQPCAST 518
+AP +P A + PA P++ A PT P + +P T
Sbjct: 3 AAPTSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPT 52
Score = 33.8 bits (77), Expect = 0.14
Identities = 15/63 (23%), Positives = 18/63 (28%), Gaps = 4/63 (6%)
Query: 456 PAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQTSQPC 515
PAAP +P TP A T A G P P T + +P
Sbjct: 2 PAAPT-SPGTP-GVAAATQAANGGPATPAPPA--LGAAPTGDPKPKKNKKPKNPTPPRPA 57
Query: 516 AST 518
Sbjct: 58 GDN 60
>1jmq_A YAP65, 65 kDa YES-associated protein; polyproline ligand, YAP65
mutant, structural protein; NMR {Homo sapiens} SCOP:
b.72.1.1 PDB: 1k9q_A* 1k9r_A 1k5r_A* 2lax_A* 2lay_A*
Length = 46
Score = 41.9 bits (99), Expect = 9e-06
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 267 LDELGPLPPGWEQARTAEGQVYYL 290
+ + PLP GWE A+T+ GQ Y+
Sbjct: 3 IPDDVPLPAGWEMAKTSSGQRYFK 26
>2ysg_A Syntaxin-binding protein 4; synip, STXBP4, WW domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.22.1.1
Length = 40
Score = 41.8 bits (99), Expect = 9e-06
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 268 DELGPLPPGWEQARTAEGQVYY 289
LP GWE+A TA+G Y+
Sbjct: 3 SGSSGLPYGWEEAYTADGIKYF 24
>2djy_A SMAD ubiquitination regulatory factor 2; beta sheet, polyproline
type II helix, PPII, ligase/signaling protein complex;
NMR {Homo sapiens} PDB: 2lb1_A
Length = 42
Score = 41.9 bits (99), Expect = 9e-06
Identities = 13/21 (61%), Positives = 16/21 (76%)
Query: 270 LGPLPPGWEQARTAEGQVYYL 290
GPLPPGWE TA G+VY++
Sbjct: 5 SGPLPPGWEIRNTATGRVYFV 25
>2ez5_W Dnedd4, E3 ubiquitin-protein ligase NEDD4; WW domain, PY motif,
binding affinity, signalling protein,ligase; NMR
{Drosophila melanogaster}
Length = 46
Score = 41.5 bits (98), Expect = 1e-05
Identities = 7/22 (31%), Positives = 10/22 (45%)
Query: 268 DELGPLPPGWEQARTAEGQVYY 289
E PLPP W G+ ++
Sbjct: 6 GEEEPLPPRWSMQVAPNGRTFF 27
>1tk7_A CG4244-PB; WW domain, notch, signaling protein; NMR {Drosophila
melanogaster} SCOP: b.72.1.1 b.72.1.1
Length = 88
Score = 42.9 bits (101), Expect = 1e-05
Identities = 11/24 (45%), Positives = 18/24 (75%)
Query: 267 LDELGPLPPGWEQARTAEGQVYYL 290
+D LGPLP GWE+ ++ +VY++
Sbjct: 7 MDALGPLPDGWEKKIQSDNRVYFV 30
Score = 36.4 bits (84), Expect = 0.002
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 259 RSYDITTVLDELGPLPPGWEQARTAEGQVYYL 290
R+ L GPLPPGWE TA G+ +++
Sbjct: 43 RTQGQEVSLINEGPLPPGWEIRYTAAGERFFV 74
>1wr4_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus} PDB:
2lb2_A*
Length = 36
Score = 41.0 bits (97), Expect = 1e-05
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 271 GPLPPGWEQARTAEGQVYY 289
LP GWE+ + A+G+ YY
Sbjct: 3 PGLPSGWEERKDAKGRTYY 21
>1wr3_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus}
Length = 36
Score = 40.5 bits (96), Expect = 2e-05
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 271 GPLPPGWEQARTAEGQVYY 289
PLPPGWE+ G+ YY
Sbjct: 3 PPLPPGWEEKVDNLGRTYY 21
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos
taurus} SCOP: i.9.1.1
Length = 390
Score = 45.6 bits (107), Expect = 3e-05
Identities = 21/151 (13%), Positives = 34/151 (22%), Gaps = 5/151 (3%)
Query: 363 PAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVS 422
P + S T + +S P A + A +
Sbjct: 206 PILKMSTITGPVPREFKSQLQEAPLEWKALLEMQQTKMVLETFGGDGHARGDSVSQGTGL 265
Query: 423 TPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPA-ETPGAP 481
P + +P + + + P P P + PG P
Sbjct: 266 APGSPRKPGTSSIGNVNPGSYGPGSSGTWNPGRPEPGSAGTWNPGRPEPGSAGTWNPGRP 325
Query: 482 EP----VPSPAAPAPVETPSVPAEPTPTASP 508
EP +P P P + S
Sbjct: 326 EPGSAGTWNPGRPEPGSAGTWNPGRPEPGSA 356
Score = 44.5 bits (104), Expect = 5e-05
Identities = 27/177 (15%), Positives = 35/177 (19%), Gaps = 3/177 (1%)
Query: 343 KDSWDNIWKKISQTIEPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPV 402
+K Q E QT V + P
Sbjct: 214 TGPVPREFKSQLQEAPLEWKALLEMQQTKMVLETFGGDGHARGDSVSQGTGLAP-GSPRK 272
Query: 403 PAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDT 462
P S+ P P T A S P P
Sbjct: 273 PGTSSIGNVNPGSYGPGSSGTWNPGRPEPGSAGTWNPGRPEPGSAGTWNP-GRPEPGSAG 331
Query: 463 PVTPVASAPPTPAET-PGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQTSQPCAST 518
P P + PG PEP + S + ++ S P T
Sbjct: 332 TWNPGRPEPGSAGTWNPGRPEPGSAGTWNTGSSGSSSFRPDSSGHGNIRPSSPDWGT 388
>2jmf_A E3 ubiquitin-protein ligase suppressor of deltex; WW domain,
solution, complex, ligase/signaling protein complex; NMR
{Drosophila melanogaster} SCOP: b.72.1.1 PDB: 2op7_A
Length = 53
Score = 40.8 bits (96), Expect = 3e-05
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 267 LDELGPLPPGWEQARTAEGQVYY 289
L GPLPPGWE TA G+ ++
Sbjct: 13 LINEGPLPPGWEIRYTAAGERFF 35
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface
adhesin WALL, peptidoglycan-anchor, cell adhesion; HET:
PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Length = 497
Score = 45.3 bits (105), Expect = 3e-05
Identities = 16/98 (16%), Positives = 23/98 (23%)
Query: 407 TPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTP 466
+ P T + + + P + + + A P T P
Sbjct: 392 SGPNNYVTVGATSATNVMPVSDMPVVPGKDNTDGKKPNIWYSLNGKIRAVNVPKVTKEKP 451
Query: 467 VASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTP 504
PT P P AP P PT
Sbjct: 452 TPPVKPTAPTKPTYETEKPLKPAPVAPNYEKEPTPPTR 489
Score = 43.0 bits (99), Expect = 2e-04
Identities = 15/100 (15%), Positives = 21/100 (21%)
Query: 406 STPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVT 465
V + + P V P + P
Sbjct: 394 PNNYVTVGATSATNVMPVSDMPVVPGKDNTDGKKPNIWYSLNGKIRAVNVPKVTKEKPTP 453
Query: 466 PVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPT 505
PV PT P+P AP + P+ P
Sbjct: 454 PVKPTAPTKPTYETEKPLKPAPVAPNYEKEPTPPTRLEHH 493
Score = 38.0 bits (86), Expect = 0.006
Identities = 19/108 (17%), Positives = 30/108 (27%), Gaps = 4/108 (3%)
Query: 388 VKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESP 447
+K + V V A + PV+ + + + + + P +
Sbjct: 389 IKMSGPNNYVTVGATSATNVMPVSDMPVVPGKDNTDGKKPNIWYSLNGKIRAVNVPKVTK 448
Query: 448 AASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVET 495
TP P A P P P AP P P +E
Sbjct: 449 EKPTPPVKPTA----PTKPTYETEKPLKPAPVAPNYEKEPTPPTRLEH 492
Score = 38.0 bits (86), Expect = 0.007
Identities = 23/102 (22%), Positives = 33/102 (32%), Gaps = 2/102 (1%)
Query: 378 KESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPV 437
K S P V ++ +PVS +P + S + A +
Sbjct: 390 KMSGPNNYVTVGATSATNVMPVSDMPVVPGKDNTDGKKPNI-WYSLNGKIRAVNVPKVTK 448
Query: 438 PSPTTPVESPAASTPVEAPAAPV-DTPVTPVASAPPTPAETP 478
PT PV+ A + P P+ PV P PTP
Sbjct: 449 EKPTPPVKPTAPTKPTYETEKPLKPAPVAPNYEKEPTPPTRL 490
Score = 33.7 bits (75), Expect = 0.13
Identities = 14/79 (17%), Positives = 22/79 (27%), Gaps = 1/79 (1%)
Query: 355 QTIEPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPV-PVSPVPAPSTPPVATP 413
+P+ S + + + + P V + KP V+P P P P P
Sbjct: 416 VVPGKDNTDGKKPNIWYSLNGKIRAVNVPKVTKEKPTPPVKPTAPTKPTYETEKPLKPAP 475
Query: 414 TETTPAPVSTPTETAAASP 432
TP
Sbjct: 476 VAPNYEKEPTPPTRLEHHH 494
Score = 33.3 bits (74), Expect = 0.21
Identities = 24/118 (20%), Positives = 35/118 (29%), Gaps = 9/118 (7%)
Query: 344 DSWDNIWKKIS----QTIEPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPV 399
WD+ S I+ S P TS + S P VP +P
Sbjct: 372 SGWDSSDAPNSWYGAGAIKMSGPNNYVTVGATSATNVMPVSDMPVVPGKDNTDGKKPNIW 431
Query: 400 ----SPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPV 453
+ A + P V T P + PT+ + P+P P + P
Sbjct: 432 YSLNGKIRAVNVPKVTKEKPTPPVKPTAPTKPTYETEKPLK-PAPVAPNYEKEPTPPT 488
Score = 33.3 bits (74), Expect = 0.22
Identities = 16/73 (21%), Positives = 26/73 (35%)
Query: 342 GKDSWDNIWKKISQTIEPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSP 401
GKD+ D I ++ P T + T + + PT P + ++P PV+P
Sbjct: 419 GKDNTDGKKPNIWYSLNGKIRAVNVPKVTKEKPTPPVKPTAPTKPTYETEKPLKPAPVAP 478
Query: 402 VPAPSTPPVATPT 414
P
Sbjct: 479 NYEKEPTPPTRLE 491
Score = 32.9 bits (73), Expect = 0.27
Identities = 20/107 (18%), Positives = 34/107 (31%), Gaps = 5/107 (4%)
Query: 341 LGKDSWDNIWKKISQTIEPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVS 400
K S N + + T + P ++ + + + P +
Sbjct: 388 AIKMSGPNNYVTVGATSATNVMPVSDMPVVPGK--DNTDGKKPNIWYSLNGKIRAVNVPK 445
Query: 401 PVPAPSTPPVA--TPTETTPAPVSTPTETAAASPVAAPVPSPTTPVE 445
TPPV PT+ T P + A +P P+P T +E
Sbjct: 446 VTKEKPTPPVKPTAPTKPTY-ETEKPLKPAPVAPNYEKEPTPPTRLE 491
Score = 32.2 bits (71), Expect = 0.45
Identities = 12/96 (12%), Positives = 19/96 (19%), Gaps = 1/96 (1%)
Query: 366 EPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPT 425
P+ + + P P S PT
Sbjct: 393 GPNNYVTVGATSATNVMPVSDMPVVPGKDNTDGKKPNIWYSLNGKIRAVNVPKVTKEKPT 452
Query: 426 ETAAASPVAAPVPSPTTPV-ESPAASTPVEAPAAPV 460
+ P P+ +P A + P P
Sbjct: 453 PPVKPTAPTKPTYETEKPLKPAPVAPNYEKEPTPPT 488
Score = 30.6 bits (67), Expect = 1.3
Identities = 16/99 (16%), Positives = 26/99 (26%), Gaps = 5/99 (5%)
Query: 421 VSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPT-----PA 475
P A + P+ V + +A+ + PV P
Sbjct: 377 SDAPNSWYGAGAIKMSGPNNYVTVGATSATNVMPVSDMPVVPGKDNTDGKKPNIWYSLNG 436
Query: 476 ETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQTSQP 514
+ P + P P P+ P +PT P
Sbjct: 437 KIRAVNVPKVTKEKPTPPVKPTAPTKPTYETEKPLKPAP 475
>2ysb_A Salvador homolog 1 protein; WW domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus} SCOP: k.22.1.1
Length = 49
Score = 40.4 bits (95), Expect = 4e-05
Identities = 11/22 (50%), Positives = 12/22 (54%)
Query: 268 DELGPLPPGWEQARTAEGQVYY 289
E PLPPGW T G+ YY
Sbjct: 7 GEDLPLPPGWSVDWTMRGRKYY 28
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition,
kinase-INH complex, rubredoxin fold, TPR domain,
transferase; HET: AXX; 2.40A {Mycobacterium
tuberculosis}
Length = 681
Score = 45.2 bits (107), Expect = 4e-05
Identities = 15/109 (13%), Positives = 26/109 (23%)
Query: 391 AASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAAS 450
V P P ST + + + T+ V A + V + +
Sbjct: 328 REVVAQDTGVPRPGLSTIFSPSRSTFGVDLLVAHTDVYLDGQVHAEKLTANEIVTALSVP 387
Query: 451 TPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVP 499
A T ++ T A E+ +P
Sbjct: 388 LVDPTDVAASVLQATVLSQPVQTLDSLRAARHGALDADGVDFSESVELP 436
Score = 43.7 bits (103), Expect = 1e-04
Identities = 13/105 (12%), Positives = 22/105 (20%), Gaps = 3/105 (2%)
Query: 379 ESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVP 438
E +P S P T E A+ + +
Sbjct: 329 EVVAQDTGVPRPGLSTIFSPSRSTFGVDLLVAHTDVYLDGQV---HAEKLTANEIVTALS 385
Query: 439 SPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEP 483
P AAS + + + +A + G
Sbjct: 386 VPLVDPTDVAASVLQATVLSQPVQTLDSLRAARHGALDADGVDFS 430
Score = 31.7 bits (72), Expect = 0.70
Identities = 13/94 (13%), Positives = 22/94 (23%), Gaps = 1/94 (1%)
Query: 359 PSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPV-PAPSTPPVATPTETT 417
P PS++T + + A + + P P
Sbjct: 340 PGLSTIFSPSRSTFGVDLLVAHTDVYLDGQVHAEKLTANEIVTALSVPLVDPTDVAASVL 399
Query: 418 PAPVSTPTETAAASPVAAPVPSPTTPVESPAAST 451
A V + S AA + + S
Sbjct: 400 QATVLSQPVQTLDSLRAARHGALDADGVDFSESV 433
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici
SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens}
PDB: 3cw1_A
Length = 231
Score = 44.3 bits (104), Expect = 4e-05
Identities = 24/131 (18%), Positives = 30/131 (22%), Gaps = 2/131 (1%)
Query: 384 TVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTP 443
E P V A P + A + +A PV P
Sbjct: 80 MTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMP--QAPAGLAGPVRGVGGP 137
Query: 444 VESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPT 503
+ AA +A AP G P P AP P P
Sbjct: 138 SQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRP 197
Query: 504 PTASPVQTSQP 514
P P+
Sbjct: 198 PMGPPMGIPPG 208
Score = 41.9 bits (98), Expect = 2e-04
Identities = 28/140 (20%), Positives = 36/140 (25%), Gaps = 2/140 (1%)
Query: 375 TEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVA 434
T + T P A P A P P PA ++ P
Sbjct: 81 TVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQ 140
Query: 435 APVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVE 494
P V + AA+ AP P PP P P P P+
Sbjct: 141 VMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPPMG 200
Query: 495 TPSVPAEPTPTASPVQTSQP 514
P P +P+ P
Sbjct: 201 PP--MGIPPGRGTPMGMPPP 218
Score = 36.2 bits (83), Expect = 0.016
Identities = 27/150 (18%), Positives = 36/150 (24%), Gaps = 5/150 (3%)
Query: 359 PSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTP 418
S P + T + + + A P V AP +A P
Sbjct: 78 VSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAP--AGLAGPVRGVG 135
Query: 419 APVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETP 478
P VAA + T + P P P + PP P
Sbjct: 136 GPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPP---PPMGRGAPPPGMMGPP 192
Query: 479 GAPEPVPSPAAPAPVETPSVPAEPTPTASP 508
P P P + P P P
Sbjct: 193 PGMRPPMGPPMGIPPGRGTPMGMPPPGMRP 222
Score = 34.2 bits (78), Expect = 0.074
Identities = 23/115 (20%), Positives = 25/115 (21%), Gaps = 3/115 (2%)
Query: 385 VPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPV 444
+P P PV P T V+ A AS AP P
Sbjct: 114 IPAGVPMPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRG 173
Query: 445 ESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVP 499
P P P PP P P P P P
Sbjct: 174 GPPPPMGRGAPPPGM---MGPPPGMRPPMGPPMGIPPGRGTPMGMPPPGMRPPPP 225
>2dmv_A Itchy homolog E3 ubiquitin protein ligase; WW domain, three
stranded antiparallel beta sheet, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 43
Score = 39.9 bits (94), Expect = 4e-05
Identities = 11/22 (50%), Positives = 12/22 (54%)
Query: 268 DELGPLPPGWEQARTAEGQVYY 289
LPPGWEQ G+VYY
Sbjct: 3 SGSSGLPPGWEQRVDQHGRVYY 24
>1wr7_A NEDD4-2; all-beta, ligase; NMR {Mus musculus}
Length = 41
Score = 39.5 bits (93), Expect = 6e-05
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 271 GPLPPGWEQARTAEGQVYY 289
LPPGWE G+ ++
Sbjct: 7 SFLPPGWEMRIAPNGRPFF 25
>2kxq_A E3 ubiquitin-protein ligase smurf2; WW, smurf2, TGF-beta, modular
binding, protein BIN; NMR {Homo sapiens} PDB: 2lb0_A*
2laz_A*
Length = 90
Score = 40.6 bits (95), Expect = 7e-05
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 268 DELGPLPPGWEQARTAEGQVYYL 290
LP G+EQ T +GQVY+L
Sbjct: 5 GSPPDLPEGYEQRTTQQGQVYFL 27
Score = 36.8 bits (85), Expect = 0.002
Identities = 13/20 (65%), Positives = 16/20 (80%)
Query: 271 GPLPPGWEQARTAEGQVYYL 290
GPLPPGWE TA G+VY++
Sbjct: 54 GPLPPGWEIRNTATGRVYFV 73
>1e0m_A Wwprototype; SH3 prototype, protein design, de novo protein; NMR {}
SCOP: k.22.1.1
Length = 37
Score = 38.7 bits (91), Expect = 9e-05
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 271 GPLPPGWEQARTAEGQVYY 289
LPPGW++ +T G+ YY
Sbjct: 2 MGLPPGWDEYKTHNGKTYY 20
>2zaj_A Membrane-associated guanylate kinase, WW and PDZ domain-containing
protein 1; BAI1-associated protein 1 (BAP-1); NMR {Homo
sapiens}
Length = 49
Score = 38.9 bits (91), Expect = 1e-04
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 264 TTVLDELGPLPPGWEQARTAEGQVYY 289
++ LD LP GWE+ +YY
Sbjct: 5 SSGLDSELELPAGWEKIEDPVYGIYY 30
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.9 bits (103), Expect = 1e-04
Identities = 84/523 (16%), Positives = 140/523 (26%), Gaps = 194/523 (37%)
Query: 71 DETNLR--LLSRPDLGITF---TKIH--AWRLT-QYSKCVFLDADVLIVQNCDELFDREE 122
D + R LS L T A +L Q++K + + DE E
Sbjct: 2 DAYSTRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAAD--DEPTTPAE 59
Query: 123 LSAAPDAGWPDCFNSGVFV---FKPSE-STYNALVEFALVNGSFDDA----------TRQ 168
L F +V +PS+ ++ ++ L F++ +
Sbjct: 60 LVGK--------FLG--YVSSLVEPSKVGQFDQVLNLCL--TEFENCYLEGNDIHALAAK 107
Query: 169 L-----QKPLNMRNLPKSFFQPPSTGSRSPSVSSISHSRENSADSAFGTSTITSTSS--S 221
L + + L K++ R ++SA + + +
Sbjct: 108 LLQENDTTLVKTKELIKNYITARIMAKRPFD---------KKSNSALFRAVGEGNAQLVA 158
Query: 222 VSGG-G--------LQIAHPRAHSSPASLQQTYASAQQQ----HQQHLKQ---------- 258
+ GG G L+ L QTY + L +
Sbjct: 159 IFGGQGNTDDYFEELR-----------DLYQTYHVLVGDLIKFSAETLSELIRTTLDAEK 207
Query: 259 ---RSYDITTVLDELGPLPPGWEQARTAEGQVYYLKGVLFMYTRLQAGLARALAQVPIGT 315
+ +I L+ P YL +PI
Sbjct: 208 VFTQGLNILEWLENPSNTPD-----------KDYL------------------LSIPISC 238
Query: 316 P-ISAEQLA-YEDHIHRQHWEEGHI-DYL------GK-----------DSWDNIWKKISQ 355
P I QLA Y + G + YL + DSW++ + + +
Sbjct: 239 PLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRK 298
Query: 356 TIE----------PSKPPAAEPSQTTSESTEKKESSP-P-------TVPEVK-------- 389
I + P + P +S E E P P T +V+
Sbjct: 299 AITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNS 358
Query: 390 --PAASVEPVPVSPVPAP-----STPP------------VATPT--ETTPAPVS--TPTE 426
PA + V +S V S PP P+ + + P S
Sbjct: 359 HLPAG--KQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKF 416
Query: 427 TAAASPVAAPVPSP-----TTPVESPAASTPVEAPAAPVDTPV 464
+ PVA+P S + + V A + PV
Sbjct: 417 SNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPV 459
Score = 29.2 bits (65), Expect = 3.7
Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 7/46 (15%)
Query: 66 VFDSRDETNLRLLS---RPDL--GITFTKIHAW-RLTQYSKCVFLD 105
V+D+ D ++LR+LS + I + W TQ+ LD
Sbjct: 459 VYDTFDGSDLRVLSGSISERIVDCIIRLPVK-WETTTQFKATHILD 503
>2ysh_A GAS-7, growth-arrest-specific protein 7; WW domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.22.1.1
Length = 40
Score = 37.7 bits (88), Expect = 2e-04
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 271 GPLPPGWEQARTAEGQVYY 289
LPPGW+ + +G+ YY
Sbjct: 6 SGLPPGWQSYLSPQGRRYY 24
>2yse_A Membrane-associated guanylate kinase, WW and PDZ domain-containing
protein 1; MAGI-1, WW domain, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 60
Score = 38.4 bits (89), Expect = 2e-04
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 264 TTVLDELGPLPPGWEQARTAEGQVYYL 290
++ LD LP GWE+ +YY+
Sbjct: 5 SSGLDSELELPAGWEKIEDPVYGIYYV 31
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein,
abnormal nuclear; zinc-finger, beta barrel, VWA domain,
gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP:
a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Length = 926
Score = 42.1 bits (98), Expect = 4e-04
Identities = 11/121 (9%), Positives = 20/121 (16%), Gaps = 4/121 (3%)
Query: 398 PVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPA 457
P + + P + + P + TP +
Sbjct: 10 PQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQL 69
Query: 458 APVDTPVTPVASAPPTPAETPGAPE----PVPSPAAPAPVETPSVPAEPTPTASPVQTSQ 513
T + P P P++ P P
Sbjct: 70 HQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAMG 129
Query: 514 P 514
Sbjct: 130 Q 130
Score = 42.1 bits (98), Expect = 4e-04
Identities = 25/157 (15%), Positives = 38/157 (24%), Gaps = 9/157 (5%)
Query: 362 PPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPV 421
+ Q + + + PP P AA + + P + P + TPA
Sbjct: 11 QAQLQYGQNATPLQQPAQFMPPQDP---AAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQE 67
Query: 422 STPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAP 481
+ A+ + P+ P A P PV P A G P
Sbjct: 68 QLHQQIDQATTSMNDMHLHNVPLVDPNAYMQ---PQVPVQMGTPLQQQQQPMAAPAYGQP 124
Query: 482 EPVPSPAA---PAPVETPSVPAEPTPTASPVQTSQPC 515
+ P P P
Sbjct: 125 SAAMGQNMRPMNQLYPIDLLTELPPPITDLTLPPPPL 161
>3k8t_A Ribonucleoside-diphosphate reductase large chain; eukaryotic
ribonucleotide reductase, nucleotide analogs, all enzyme
ATP-binding; HET: DGT 2A5; 2.10A {Saccharomyces
cerevisiae} PDB: 1zyz_A 2cvs_A 2cvt_A* 2cvu_A* 2cvv_A*
1zzd_A* 2cvw_A* 2cvy_A* 2eud_A* 2zlf_A 2zlg_A* 2cvx_A*
3paw_A 3s87_A* 3s8b_A* 3s8c_A* 3s8a_A* 3tb9_A* 3tba_A*
Length = 888
Score = 41.5 bits (97), Expect = 6e-04
Identities = 17/111 (15%), Positives = 37/111 (33%), Gaps = 11/111 (9%)
Query: 363 PAAEPSQTTSESTEKKESS-----------PPTVPEVKPAASVEPVPVSPVPAPSTPPVA 411
A+ Q T + +++ P +P A+ + VP + + P +
Sbjct: 747 AASAAIQFTIDQKIADQATENVADISNLKRPSYMPSSASYAASDFVPAAVTANATIPSLD 806
Query: 412 TPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDT 462
+ +E + PT + + + A + + VE P P +
Sbjct: 807 SSSEASREASPAPTGSHSLTKGMAELNVQESKVEVPEVPAPTKNEEKAAPI 857
>1wmv_A WWOX, WW domain containing oxidoreductase; all-beta, apoptosis; NMR
{Homo sapiens}
Length = 54
Score = 36.7 bits (85), Expect = 6e-04
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 271 GPLPPGWEQARTAEGQVYYL 290
G LP GWEQ GQV+++
Sbjct: 10 GDLPYGWEQETDENGQVFFV 29
>1zy8_K Pyruvate dehydrogenase protein X component, mitochondrial; human,
dihydrolipoamide dehydrogenase, dihydrolipoyl
dehydrogenase; HET: FAD; 2.59A {Homo sapiens}
Length = 229
Score = 39.4 bits (92), Expect = 0.001
Identities = 16/76 (21%), Positives = 21/76 (27%), Gaps = 2/76 (2%)
Query: 433 VAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAP 492
+ S + S + P PP P P P P P P P
Sbjct: 60 IVVEEGSKNIRLGSLIGL--IVEEGEDWKHVEIPKDVGPPPPVSKPSEPRPSPEPQISIP 117
Query: 493 VETPSVPAEPTPTASP 508
V+ +P SP
Sbjct: 118 VKKEHIPGTLRFRLSP 133
Score = 34.0 bits (78), Expect = 0.071
Identities = 19/123 (15%), Positives = 24/123 (19%), Gaps = 20/123 (16%)
Query: 379 ESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVA---- 434
E P P PVS P P + T SP A
Sbjct: 80 EEGEDWKHVEIPKDVGPPPPVSKPSEPRPSPEPQISIPVKKEHIPGTLRFRLSPAARNIL 139
Query: 435 -------APVPSPTTP--------VESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPG 479
+ + T P TP P+P +
Sbjct: 140 EKHSLDASQG-TATGPRGIFTKEDALKLVQLKQTGKITESRPTPAPTATPTAPSPLQATS 198
Query: 480 APE 482
P
Sbjct: 199 GPS 201
Score = 32.5 bits (74), Expect = 0.25
Identities = 16/56 (28%), Positives = 17/56 (30%), Gaps = 5/56 (8%)
Query: 434 AAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAA 489
V P P S P E +P P S P PG SPAA
Sbjct: 85 WKHVEIPKDVGPPPPVSKPSEPRPSP-----EPQISIPVKKEHIPGTLRFRLSPAA 135
>1mv3_A MYC box dependent interacting protein 1; tumor suppressor,
endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP:
b.34.2.1
Length = 213
Score = 38.9 bits (89), Expect = 0.002
Identities = 21/132 (15%), Positives = 31/132 (23%)
Query: 380 SSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPS 439
A +P SP PPV P + TP+ + +
Sbjct: 11 RVNHEPEPAGGATPGATLPKSPSQLRKGPPVPPPPKHTPSKEVKQEQILSLFEDTFVPEI 70
Query: 440 PTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVP 499
T PA ++ V P P +A A + V + A
Sbjct: 71 SVTTPSQPAEASEVAGGTQPAAGAQEPGETAASEAASSSLPAVVVETFPATVNGTVEGGS 130
Query: 500 AEPTPTASPVQT 511
P
Sbjct: 131 GAGRLDLPPGFM 142
Score = 37.8 bits (86), Expect = 0.005
Identities = 11/135 (8%), Positives = 24/135 (17%)
Query: 380 SSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPS 439
++ P + S + P P TP++ + +
Sbjct: 5 AATPEIRVNHEPEPAGGATPGATLPKSPSQLRKGPPVPPPPKHTPSKEVKQEQILSLFED 64
Query: 440 PTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVP 499
P S + + + P A
Sbjct: 65 TFVPEISVTTPSQPAEASEVAGGTQPAAGAQEPGETAASEAASSSLPAVVVETFPATVNG 124
Query: 500 AEPTPTASPVQTSQP 514
+ + P
Sbjct: 125 TVEGGSGAGRLDLPP 139
Score = 36.6 bits (83), Expect = 0.010
Identities = 29/133 (21%), Positives = 40/133 (30%)
Query: 353 ISQTIEPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVAT 412
I EP A P T +S + PP P K S E + V
Sbjct: 10 IRVNHEPEPAGGATPGATLPKSPSQLRKGPPVPPPPKHTPSKEVKQEQILSLFEDTFVPE 69
Query: 413 PTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPP 472
+ TTP+ + +E A + AA P S AAS+ + A
Sbjct: 70 ISVTTPSQPAEASEVAGGTQPAAGAQEPGETAASEAASSSLPAVVVETFPATVNGTVEGG 129
Query: 473 TPAETPGAPEPVP 485
+ A P
Sbjct: 130 SGAGRLDLPPGFM 142
Score = 34.7 bits (78), Expect = 0.045
Identities = 18/104 (17%), Positives = 23/104 (22%)
Query: 415 ETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTP 474
+ +PA P P T P P P TP V
Sbjct: 1 DGSPAATPEIRVNHEPEPAGGATPGATLPKSPSQLRKGPPVPPPPKHTPSKEVKQEQILS 60
Query: 475 AETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQTSQPCAST 518
+ P E V P A + + AS
Sbjct: 61 LFEDTFVPEISVTTPSQPAEASEVAGGTQPAAGAQEPGETAASE 104
Score = 32.7 bits (73), Expect = 0.18
Identities = 25/113 (22%), Positives = 29/113 (25%), Gaps = 5/113 (4%)
Query: 407 TPPVATPT-----ETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVD 461
P ATP E PA +TP T SP P P S V+
Sbjct: 2 GSPAATPEIRVNHEPEPAGGATPGATLPKSPSQLRKGPPVPPPPKHTPSKEVKQEQILSL 61
Query: 462 TPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQTSQP 514
T V T P V PA + AS +
Sbjct: 62 FEDTFVPEISVTTPSQPAEASEVAGGTQPAAGAQEPGETAASEAASSSLPAVV 114
>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus
interaction, metal-binding, nucleus, receptor,
transcription, transcription regulation, zinc-FIN
activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB:
3dzu_A* 3e00_A*
Length = 467
Score = 39.7 bits (92), Expect = 0.002
Identities = 20/121 (16%), Positives = 37/121 (30%), Gaps = 6/121 (4%)
Query: 396 PVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEA 455
P + APS P P +P + +P + S + P + + SP +
Sbjct: 27 PTGRGSMAAPSLHPSLGPGIGSPGQLHSP--ISTLSSPINGMGPPFSVISSPMGPHSMSV 84
Query: 456 PAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQTSQPC 515
P P T + + P ++ P+ P+ + + C
Sbjct: 85 PTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNGVLKVPAHPSGNMASFTK----HIC 140
Query: 516 A 516
A
Sbjct: 141 A 141
Score = 33.9 bits (77), Expect = 0.12
Identities = 14/106 (13%), Positives = 27/106 (25%), Gaps = 2/106 (1%)
Query: 380 SSPPTVPEVKPAASVEPVPVSPVPAPSTPPVAT--PTETTPAPVSTPTETAAASPVAAPV 437
++P P + P SP+ S+P P +P+ + + +P
Sbjct: 34 AAPSLHPSLGPGIGSPGQLHSPISTLSSPINGMGPPFSVISSPMGPHSMSVPTTPTLGFS 93
Query: 438 PSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEP 483
+ E P+ A P+
Sbjct: 94 TGSPQLSSPMNPVSSSEDIKPPLGLNGVLKVPAHPSGNMASFTKHI 139
Score = 29.3 bits (65), Expect = 3.1
Identities = 15/80 (18%), Positives = 26/80 (32%)
Query: 438 PSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPS 497
S T+P + + P P+ +P + +P P +P+ S
Sbjct: 22 SSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSSPINGMGPPFSVISSPMGPHS 81
Query: 498 VPAEPTPTASPVQTSQPCAS 517
+ TPT S +S
Sbjct: 82 MSVPTTPTLGFSTGSPQLSS 101
>2wvr_C DNA replication factor CDT1; DNA replication license, DNA
replication inhibitor, phosphoprotein, UBL conjugation,
DNA-binding, polymorphism; HET: DNA; 3.30A {Homo
sapiens} PDB: 2klo_A*
Length = 546
Score = 38.9 bits (89), Expect = 0.004
Identities = 18/112 (16%), Positives = 22/112 (19%), Gaps = 3/112 (2%)
Query: 403 PAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDT 462
P P TP+P A A + PA
Sbjct: 15 PGPPRIAPPKLACRTPSP---ARPALRAPASATSGSRKRARPPAAPGRDQARPPARRRLR 71
Query: 463 PVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQTSQP 514
S+P TP P P P T S+
Sbjct: 72 LSVDEVSSPSTPEAPDIPACPSPGQKIKKSTPAAGQPPHLTSAQDQDTISEL 123
Score = 37.4 bits (85), Expect = 0.010
Identities = 21/106 (19%), Positives = 33/106 (31%), Gaps = 2/106 (1%)
Query: 411 ATPTETTPAPVSTPTETAAASPVAAP-VPSPTTP-VESPAASTPVEAPAAPVDTPVTPVA 468
T P A P A PSP P + +PA++T A
Sbjct: 2 EQRRVTDFFARRRPGPPRIAPPKLACRTPSPARPALRAPASATSGSRKRARPPAAPGRDQ 61
Query: 469 SAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQTSQP 514
+ PP + + V SP+ P + P+ P+ +
Sbjct: 62 ARPPARRRLRLSVDEVSSPSTPEAPDIPACPSPGQKIKKSTPAAGQ 107
Score = 36.6 bits (83), Expect = 0.019
Identities = 15/107 (14%), Positives = 22/107 (20%), Gaps = 1/107 (0%)
Query: 411 ATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASA 470
A P SP + +P + A D P
Sbjct: 11 ARRRPGPPRIAPPKLACRTPSPARPALRAPASATSGSRKRARPPAAPGR-DQARPPARRR 69
Query: 471 PPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQTSQPCAS 517
+ +P +P PA + TP A
Sbjct: 70 LRLSVDEVSSPSTPEAPDIPACPSPGQKIKKSTPAAGQPPHLTSAQD 116
>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis,
malonyl/palmitoyl transferase, phosphopantetheine,
transferase; HET: GVL FMN; 3.10A {Saccharomyces
cerevisiae} PDB: 2vkz_A* 3hmj_A*
Length = 1887
Score = 39.2 bits (91), Expect = 0.004
Identities = 12/58 (20%), Positives = 15/58 (25%), Gaps = 2/58 (3%)
Query: 434 AAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPA 491
+ E A TP + AP P A PA P A+
Sbjct: 95 SELAAKEEPAKEEAPAPTPAASAPAPA--AAAPAPVAAAAPAAAAAEIADEPVKASLL 150
Score = 35.3 bits (81), Expect = 0.055
Identities = 17/62 (27%), Positives = 23/62 (37%), Gaps = 6/62 (9%)
Query: 442 TPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAE 501
P E A P + A A++ P PA AP +PAA A E P +
Sbjct: 93 DPSELAAKEEPAKEEAPA-----PTPAASAPAPAAAAPAPVAAAAPAAAAA-EIADEPVK 146
Query: 502 PT 503
+
Sbjct: 147 AS 148
Score = 34.9 bits (80), Expect = 0.065
Identities = 18/77 (23%), Positives = 28/77 (36%), Gaps = 10/77 (12%)
Query: 392 ASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAAST 451
+ +P ++ P+ PT PA + AA +PVAA P + AA+
Sbjct: 90 YTPDPSELAAKEEPAKEEAPAPT---PAASAPAPAAAAPAPVAAAAP-------AAAAAE 139
Query: 452 PVEAPAAPVDTPVTPVA 468
+ P VA
Sbjct: 140 IADEPVKASLLLHVLVA 156
Score = 33.8 bits (77), Expect = 0.17
Identities = 11/52 (21%), Positives = 15/52 (28%), Gaps = 1/52 (1%)
Query: 457 AAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASP 508
P + + A P P+PAA AP + A A
Sbjct: 90 YTPDPSELAAKEEPAKEEAPAPTPAASAPAPAAAAPA-PVAAAAPAAAAAEI 140
Score = 30.7 bits (69), Expect = 1.5
Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 3/57 (5%)
Query: 366 EPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVS 422
+PS+ ++ KE +P P A++ P +P P + P A E PV
Sbjct: 93 DPSELAAKEEPAKEEAPAPTP---AASAPAPAAAAPAPVAAAAPAAAAAEIADEPVK 146
>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl
reductase, ketoacyl synthase, ketoacyl reductase; 3.1A
{Thermomyces lanuginosus} PDB: 2uvb_A*
Length = 1878
Score = 38.8 bits (90), Expect = 0.005
Identities = 14/58 (24%), Positives = 20/58 (34%)
Query: 434 AAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPA 491
P P +PAA++ +A A A+AP + G PV A
Sbjct: 90 YDVEPIEDEPEPTPAAASSADAAPAAAPAAPAAPAAAPAPAPASAGPAAPVQDAPVTA 147
Score = 37.2 bits (86), Expect = 0.015
Identities = 13/54 (24%), Positives = 19/54 (35%)
Query: 424 PTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAET 477
+ ++ +P +PAA APA P PV AP T +
Sbjct: 97 DEPEPTPAAASSADAAPAAAPAAPAAPAAAPAPAPASAGPAAPVQDAPVTATDV 150
Score = 36.8 bits (85), Expect = 0.018
Identities = 19/73 (26%), Positives = 23/73 (31%), Gaps = 4/73 (5%)
Query: 434 AAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPV 493
A + P+E TP A +A P A A P A S APV
Sbjct: 85 AKEIYYDVEPIEDEPEPTPAAASSADAAPAAAPAAPAAPAAA----PAPAPASAGPAAPV 140
Query: 494 ETPSVPAEPTPTA 506
+ V A A
Sbjct: 141 QDAPVTATDVIRA 153
Score = 32.2 bits (73), Expect = 0.52
Identities = 13/57 (22%), Positives = 17/57 (29%)
Query: 456 PAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQTS 512
D P A+A A AP +PAA S +PV +
Sbjct: 92 VEPIEDEPEPTPAAASSADAAPAAAPAAPAAPAAAPAPAPASAGPAAPVQDAPVTAT 148
Score = 32.2 bits (73), Expect = 0.56
Identities = 11/52 (21%), Positives = 15/52 (28%), Gaps = 1/52 (1%)
Query: 457 AAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASP 508
P + + +PAAPA P+ PA P A
Sbjct: 90 YDVEPIEDEPEPTPAAASSADAAPAAAPAAPAAPAAAPAPA-PASAGPAAPV 140
Score = 30.3 bits (68), Expect = 2.2
Identities = 16/58 (27%), Positives = 20/58 (34%), Gaps = 3/58 (5%)
Query: 366 EPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVST 423
EP + E T SS P AA P + PAP+ APV+
Sbjct: 93 EPIEDEPEPTPAAASSADAAP---AAAPAAPAAPAAAPAPAPASAGPAAPVQDAPVTA 147
Score = 29.1 bits (65), Expect = 4.4
Identities = 10/51 (19%), Positives = 16/51 (31%)
Query: 354 SQTIEPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPA 404
T + A P+ + + P PAA V+ PV+
Sbjct: 100 EPTPAAASSADAAPAAAPAAPAAPAAAPAPAPASAGPAAPVQDAPVTATDV 150
>1eys_C Photosynthetic reaction center; membrane protein complex, electron
transport; HET: BGL BCL BPH MQ8 HEM CRT LDA PEF; 2.20A
{Thermochromatium tepidum} SCOP: a.138.1.2
Length = 382
Score = 38.3 bits (88), Expect = 0.006
Identities = 16/82 (19%), Positives = 20/82 (24%)
Query: 413 PTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPP 472
P P A A S +PAA+T A + P A
Sbjct: 295 PLYGAQMAKDYPGLYKTAVTQEALPGSAPASEAAPAAATEAAPEAPAQEVPAAEAVPAAA 354
Query: 473 TPAETPGAPEPVPSPAAPAPVE 494
P A P+P
Sbjct: 355 EPGAAEAAGSVEPAPVEEVAPA 376
Score = 36.8 bits (84), Expect = 0.013
Identities = 11/76 (14%), Positives = 17/76 (22%), Gaps = 1/76 (1%)
Query: 379 ESSPPTVPEVKPAASVEPVPVSPVPAPS-TPPVATPTETTPAPVSTPTETAAASPVAAPV 437
+ P ++ + AP+ A P + AA A
Sbjct: 303 KDYPGLYKTAVTQEALPGSAPASEAAPAAATEAAPEAPAQEVPAAEAVPAAAEPGAAEAA 362
Query: 438 PSPTTPVESPAASTPV 453
S A P
Sbjct: 363 GSVEPAPVEEVAPAPA 378
Score = 36.4 bits (83), Expect = 0.018
Identities = 15/76 (19%), Positives = 23/76 (30%), Gaps = 2/76 (2%)
Query: 367 PSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTE 426
P + T++ E PAA+ E P PA P +
Sbjct: 306 PGLYKTAVTQEALPGSAPASEAAPAAATEAAP--EAPAQEVPAAEAVPAAAEPGAAEAAG 363
Query: 427 TAAASPVAAPVPSPTT 442
+ +PV P+P
Sbjct: 364 SVEPAPVEEVAPAPAA 379
Score = 36.0 bits (82), Expect = 0.022
Identities = 22/87 (25%), Positives = 29/87 (33%), Gaps = 3/87 (3%)
Query: 398 PVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPA 457
P+ P T T + + A+P AA +P P + A+ V A A
Sbjct: 295 PLYGAQMAKDYPGLYKTAVTQEALPGSAPASEAAPAAATEAAPEAPAQEVPAAEAVPAAA 354
Query: 458 APVDTPVTPVASAPPTPAETPGAPEPV 484
P S P P E AP P
Sbjct: 355 EPGAA--EAAGSVEPAPVEEV-APAPA 378
Score = 36.0 bits (82), Expect = 0.026
Identities = 19/89 (21%), Positives = 25/89 (28%), Gaps = 2/89 (2%)
Query: 389 KPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPA 448
KP + P + + PA + P A+P A P A
Sbjct: 294 KPLYGAQMAKDYPGLYKTAVTQEALPGSAPASEAAPAAATEAAPEAPAQEVPAAEAVPAA 353
Query: 449 ASTPVEAPAAPVDTPVTPVASAPPTPAET 477
A A V+ PV P PA
Sbjct: 354 AEPGAAEAAGSVEP--APVEEVAPAPAAQ 380
Score = 36.0 bits (82), Expect = 0.028
Identities = 12/76 (15%), Positives = 23/76 (30%), Gaps = 2/76 (2%)
Query: 350 WKKISQTIEPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVS-PVPAPSTP 408
+ + +T + + + E++P + PAA P +
Sbjct: 305 YPGLYKTAVTQEALPGSAPASEAAPAAATEAAPEAPAQEVPAAEAVPAAAEPGAAEAAGS 364
Query: 409 PVATPT-ETTPAPVST 423
P E PAP +
Sbjct: 365 VEPAPVEEVAPAPAAQ 380
Score = 35.2 bits (80), Expect = 0.046
Identities = 21/74 (28%), Positives = 26/74 (35%), Gaps = 2/74 (2%)
Query: 359 PSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPV-SPVPAPSTPPVATP-TET 416
P A + S E++P E P A + VP VPA + P A
Sbjct: 306 PGLYKTAVTQEALPGSAPASEAAPAAATEAAPEAPAQEVPAAEAVPAAAEPGAAEAAGSV 365
Query: 417 TPAPVSTPTETAAA 430
PAPV AA
Sbjct: 366 EPAPVEEVAPAPAA 379
Score = 34.5 bits (78), Expect = 0.072
Identities = 16/83 (19%), Positives = 22/83 (26%)
Query: 360 SKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPA 419
+KP K + +P PA+ P + + E PA
Sbjct: 293 NKPLYGAQMAKDYPGLYKTAVTQEALPGSAPASEAAPAAATEAAPEAPAQEVPAAEAVPA 352
Query: 420 PVSTPTETAAASPVAAPVPSPTT 442
AA S APV
Sbjct: 353 AAEPGAAEAAGSVEPAPVEEVAP 375
Score = 33.7 bits (76), Expect = 0.12
Identities = 17/72 (23%), Positives = 24/72 (33%), Gaps = 2/72 (2%)
Query: 443 PVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEP 502
P A T P + + P A+ P E P P PA E + A
Sbjct: 306 PGLYKTAVTQEALPGSAPASEAAPAAATEAAP-EAPAQEVPAAEAV-PAAAEPGAAEAAG 363
Query: 503 TPTASPVQTSQP 514
+ +PV+ P
Sbjct: 364 SVEPAPVEEVAP 375
Score = 32.9 bits (74), Expect = 0.21
Identities = 17/70 (24%), Positives = 21/70 (30%), Gaps = 1/70 (1%)
Query: 436 PVPSPTTPVESPAASTPVEAPAAP-VDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVE 494
P T + + + AAP T P A A PA P A A
Sbjct: 306 PGLYKTAVTQEALPGSAPASEAAPAAATEAAPEAPAQEVPAAEAVPAAAEPGAAEAAGSV 365
Query: 495 TPSVPAEPTP 504
P+ E P
Sbjct: 366 EPAPVEEVAP 375
Score = 32.9 bits (74), Expect = 0.27
Identities = 13/76 (17%), Positives = 17/76 (22%)
Query: 382 PPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPT 441
+ + + A T AP + E AA V A
Sbjct: 299 AQMAKDYPGLYKTAVTQEALPGSAPASEAAPAAATEAAPEAPAQEVPAAEAVPAAAEPGA 358
Query: 442 TPVESPAASTPVEAPA 457
PVE A
Sbjct: 359 AEAAGSVEPAPVEEVA 374
Score = 32.2 bits (72), Expect = 0.42
Identities = 16/75 (21%), Positives = 23/75 (30%), Gaps = 7/75 (9%)
Query: 440 PTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVP 499
P + + A P +AP PA+ A E VP+ A P
Sbjct: 306 PGLYKTAVTQEALPGSAPASEAAPAAATEAAPEAPAQEVPAAEAVPAAAEPGA------- 358
Query: 500 AEPTPTASPVQTSQP 514
AE + P +
Sbjct: 359 AEAAGSVEPAPVEEV 373
Score = 31.0 bits (69), Expect = 1.0
Identities = 11/72 (15%), Positives = 19/72 (26%), Gaps = 1/72 (1%)
Query: 444 VESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVE-TPSVPAEP 502
V P + + + P + + AP A AP + P+ A P
Sbjct: 292 VNKPLYGAQMAKDYPGLYKTAVTQEALPGSAPASEAAPAAATEAAPEAPAQEVPAAEAVP 351
Query: 503 TPTASPVQTSQP 514
+
Sbjct: 352 AAAEPGAAEAAG 363
>3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum}
Length = 305
Score = 37.4 bits (86), Expect = 0.008
Identities = 16/92 (17%), Positives = 24/92 (26%)
Query: 420 PVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPG 479
P + + + AP +PAA T + +
Sbjct: 211 PEEAKEQEEEEAALVAPDYGAVAEYAAPAADTWGGEWGTDAAAQPAAIPAQAGADWTAAP 270
Query: 480 APEPVPSPAAPAPVETPSVPAEPTPTASPVQT 511
AP A AP + P P A+P
Sbjct: 271 APAAGGWDTAAAPAPGWEQGSAPVPAAAPTPN 302
Score = 32.8 bits (74), Expect = 0.22
Identities = 22/89 (24%), Positives = 27/89 (30%), Gaps = 1/89 (1%)
Query: 387 EVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETA-AASPVAAPVPSPTTPVE 445
E K E V+P A +T T AA P A P
Sbjct: 213 EAKEQEEEEAALVAPDYGAVAEYAAPAADTWGGEWGTDAAAQPAAIPAQAGADWTAAPAP 272
Query: 446 SPAASTPVEAPAAPVDTPVTPVASAPPTP 474
+ APA + PV +A PTP
Sbjct: 273 AAGGWDTAAAPAPGWEQGSAPVPAAAPTP 301
Score = 30.9 bits (69), Expect = 0.92
Identities = 15/82 (18%), Positives = 19/82 (23%), Gaps = 2/82 (2%)
Query: 411 ATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASA 470
A V+ AA + + A + AAP P
Sbjct: 222 AALVAPDYGAVAEYAAPAADTWGGEWGTDAAAQPAAIPAQAGADWTAAP--APAAGGWDT 279
Query: 471 PPTPAETPGAPEPVPSPAAPAP 492
PA AAP P
Sbjct: 280 AAAPAPGWEQGSAPVPAAAPTP 301
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane
protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP:
c.30.1.5 d.142.1.3 PDB: 1px2_A*
Length = 422
Score = 37.5 bits (86), Expect = 0.010
Identities = 14/93 (15%), Positives = 26/93 (27%)
Query: 422 STPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAP 481
+ + P P P P + +TP A A+ ++P P+
Sbjct: 15 MANLPNGYMTDLQRPQPPPPPPSAASPGATPGSAAASAERASTAAPVASPAAPSPGSSGG 74
Query: 482 EPVPSPAAPAPVETPSVPAEPTPTASPVQTSQP 514
S + A +T + A +
Sbjct: 75 GGFFSSLSNAVKQTTAAAAATFSEQVGGGSGGA 107
Score = 36.0 bits (82), Expect = 0.026
Identities = 11/105 (10%), Positives = 23/105 (21%), Gaps = 2/105 (1%)
Query: 372 SESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAAS 431
T+ + PP P + P + ++ + P+P S+ +S
Sbjct: 21 GYMTDLQRPQPPPPPPSAASPGATPGSAAASAERASTAAPVASPAAPSPGSSGGGGFFSS 80
Query: 432 --PVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTP 474
+ S + P
Sbjct: 81 LSNAVKQTTAAAAATFSEQVGGGSGGAGRGGAAARVLLVIDEPHT 125
Score = 35.6 bits (81), Expect = 0.041
Identities = 13/100 (13%), Positives = 25/100 (25%), Gaps = 2/100 (2%)
Query: 390 PAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAA 449
P + + P P + TP + E A+ + A +P+
Sbjct: 19 PNGYMTDLQRPQPPPPPPSAASPGA--TPGSAAASAERASTAAPVASPAAPSPGSSGGGG 76
Query: 450 STPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAA 489
+ A T + + GA +
Sbjct: 77 FFSSLSNAVKQTTAAAAATFSEQVGGGSGGAGRGGAAARV 116
Score = 33.7 bits (76), Expect = 0.15
Identities = 11/64 (17%), Positives = 18/64 (28%)
Query: 450 STPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPV 509
+ P + P PP A +PGA + +A V + P+
Sbjct: 13 NFMANLPNGYMTDLQRPQPPPPPPSAASPGATPGSAAASAERASTAAPVASPAAPSPGSS 72
Query: 510 QTSQ 513
Sbjct: 73 GGGG 76
Score = 31.4 bits (70), Expect = 0.83
Identities = 20/79 (25%), Positives = 30/79 (37%), Gaps = 2/79 (2%)
Query: 440 PTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVP 499
P + P P + TP SA + A PV SPAAP+P +
Sbjct: 19 PNGYMTDLQRPQPPPPPPSAASPGATP-GSAAASAERASTAA-PVASPAAPSPGSSGGGG 76
Query: 500 AEPTPTASPVQTSQPCAST 518
+ + + QT+ A+T
Sbjct: 77 FFSSLSNAVKQTTAAAAAT 95
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor,
chromophore, glycoprotein, lipoprotein, membrane,
palmitate phosphorylation; HET: BOG RET PLM TWT PC1;
2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Length = 448
Score = 36.4 bits (84), Expect = 0.020
Identities = 16/95 (16%), Positives = 21/95 (22%)
Query: 416 TTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPA 475
T +S A + + AA P P
Sbjct: 345 EDDKDAETEIPAGESSDAAPSADAAQMKEMMAMMQKMQQQQAAYPPQGYAPPPQGYPPQG 404
Query: 476 ETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQ 510
P P P P P + P A+P Q
Sbjct: 405 YPPQGYPPQGYPPQGYPPPPQGAPPQGAPPAAPPQ 439
Score = 36.1 bits (83), Expect = 0.028
Identities = 19/114 (16%), Positives = 34/114 (29%), Gaps = 5/114 (4%)
Query: 350 WKKISQTIEPSKPPAAEPSQTTSESTEKKESSPPTVP--EVKPAASVEPVPVSPVPAPST 407
W + + + ++T + E +++P + A ++ + P
Sbjct: 332 WVLTCCQFDDKETEDDKDAETEIPAGESSDAAPSADAAQMKEMMAMMQKMQQQQAAYP-- 389
Query: 408 PPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVD 461
P P P P + P P P +P P AP VD
Sbjct: 390 PQGYAPPPQGYPPQGYPPQGYPPQG-YPPQGYPPPPQGAPPQGAPPAAPPQGVD 442
Score = 34.9 bits (80), Expect = 0.057
Identities = 18/112 (16%), Positives = 25/112 (22%), Gaps = 6/112 (5%)
Query: 405 PSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPV 464
P + A + PS + +
Sbjct: 331 PWVLTCCQFDDKETEDDKDAETEIPAGESSDAAPSADAAQMKEMMAMMQKMQQQQ--AAY 388
Query: 465 TPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQTSQPCA 516
P APP P P P P + P P +P Q + P A
Sbjct: 389 PPQGYAPPPQGYPPQGYPPQGYPPQGYPPQ----GYPPPPQGAPPQGAPPAA 436
Score = 31.8 bits (72), Expect = 0.50
Identities = 17/109 (15%), Positives = 24/109 (22%), Gaps = 4/109 (3%)
Query: 396 PVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEA 455
P ++ T P ++ A ++ A +
Sbjct: 331 PWVLTCCQFDDKETEDDKDAETEIPAGESSDAAPSADAAQMKEMMAMMQKMQQQQAAYPP 390
Query: 456 PAAPVDTPVTPVASAPPTPAETPGAPEP--VPSPAAPAPVETPSVPAEP 502
P PP G P P P P P PA P
Sbjct: 391 QGYAPPPQGYPPQGYPPQGYPPQGYPPQGYPPPPQGAPPQGAP--PAAP 437
Score = 31.0 bits (70), Expect = 1.0
Identities = 17/93 (18%), Positives = 24/93 (25%)
Query: 356 TIEPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTE 415
I + A PS ++ E + P P P
Sbjct: 353 EIPAGESSDAAPSADAAQMKEMMAMMQKMQQQQAAYPPQGYAPPPQGYPPQGYPPQGYPP 412
Query: 416 TTPAPVSTPTETAAASPVAAPVPSPTTPVESPA 448
P P A P AP +P V++ A
Sbjct: 413 QGYPPQGYPPPPQGAPPQGAPPAAPPQGVDNQA 445
Score = 28.0 bits (62), Expect = 9.6
Identities = 15/111 (13%), Positives = 25/111 (22%), Gaps = 11/111 (9%)
Query: 366 EPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPT 425
+ +T + + E + P+A + + P
Sbjct: 340 DDKETEDDKDAETEIPAGESSDAAPSADAAQMKEMMAMMQKMQQ-----QQAAYPPQGYA 394
Query: 426 ETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAE 476
P P P P P AP P + P P +
Sbjct: 395 PPPQGYPPQGYPPQGYPPQGYPPQGYPPPPQGAP------PQGAPPAAPPQ 439
>3olm_A E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {Saccharomyces
cerevisiae}
Length = 429
Score = 36.5 bits (85), Expect = 0.020
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 268 DELGPLPPGWEQARTAEGQVYYL 290
+LGPLP GWE T +VY++
Sbjct: 4 SQLGPLPSGWEMRLTNTARVYFV 26
>1eg3_A Dystrophin; EF-hand like domain, WW domain, structural protein;
2.00A {Homo sapiens} SCOP: a.39.1.7 a.39.1.7 b.72.1.1
PDB: 1eg4_A
Length = 261
Score = 35.8 bits (82), Expect = 0.025
Identities = 5/20 (25%), Positives = 9/20 (45%)
Query: 271 GPLPPGWEQARTAEGQVYYL 290
+ WE+A + YY+
Sbjct: 10 TSVQGPWERAISPNKVPYYI 29
>3tx7_B Nuclear receptor subfamily 5 group A member 2; LRH-1, beta-catenin,
armadillo repeat, nuclear receptor LIGA binding domain,
protein binding; HET: P6L; 2.76A {Homo sapiens}
Length = 352
Score = 35.4 bits (81), Expect = 0.043
Identities = 16/130 (12%), Positives = 35/130 (26%), Gaps = 5/130 (3%)
Query: 390 PAASVEPVPVSPVPAPSTPPVATPTETTP-APVSTPTETAAASPVAAPVPSPTTPVESPA 448
+ ++ +P + + + + ++ P + P SP S T P
Sbjct: 7 MSQVIQAMPSDLTISSAIQNIHSASKGLPLNHAALPPTDYDRSPFVTSPISMTMPPHGSL 66
Query: 449 A----STPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTP 504
+ A + P +S + SPA+ + + EP
Sbjct: 67 QGYQTYGHFPSRAIKSEYPDPYTSSPESIMGYSYMDSYQTSSPASIPHLILELLKCEPDE 126
Query: 505 TASPVQTSQP 514
+
Sbjct: 127 PQVQAKIMAY 136
>2l5f_A PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA, FBP11, protein
binding; NMR {Homo sapiens}
Length = 92
Score = 32.7 bits (74), Expect = 0.048
Identities = 4/22 (18%), Positives = 9/22 (40%)
Query: 268 DELGPLPPGWEQARTAEGQVYY 289
W + ++ +G+ YY
Sbjct: 7 GTASGAKSMWTEHKSPDGRTYY 28
>2dwv_A Salvador homolog 1 protein; WW domain, dimer, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 49
Score = 31.0 bits (70), Expect = 0.070
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 269 ELGPLPPGWEQARTAEGQVYYL 290
E LPPGWE+ ++E YY+
Sbjct: 10 EREGLPPGWERVESSEFGTYYV 31
>2jxw_A WW domain-binding protein 4; WW domain containing protein, FBP21,
WBP4, metal- binding, mRNA processing, mRNA splicing,
nucleus, polymorphism; NMR {Homo sapiens}
Length = 75
Score = 31.9 bits (72), Expect = 0.073
Identities = 7/18 (38%), Positives = 9/18 (50%)
Query: 272 PLPPGWEQARTAEGQVYY 289
P W + T+EG YY
Sbjct: 2 PSKGRWVEGITSEGYHYY 19
>2g5d_A GNA33; hydrolase, beta barrel; 1.95A {Neisseria gonorrhoeae fa
1090} SCOP: b.52.1.4 PDB: 2g6g_A
Length = 422
Score = 34.1 bits (77), Expect = 0.11
Identities = 10/43 (23%), Positives = 12/43 (27%)
Query: 396 PVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVP 438
+ P P T + P P T A V VP
Sbjct: 4 SRSIQTFPQPDTSVINGPDRPAGIPDPAGTTVAGGGAVYTVVP 46
Score = 28.4 bits (62), Expect = 5.9
Identities = 10/44 (22%), Positives = 14/44 (31%)
Query: 456 PAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVP 499
+ + T P S P G P+P + A VP
Sbjct: 3 QSRSIQTFPQPDTSVINGPDRPAGIPDPAGTTVAGGGAVYTVVP 46
Score = 28.4 bits (62), Expect = 6.7
Identities = 11/43 (25%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Query: 411 ATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPV 453
+ +T P P ++ P P P+ TT A T V
Sbjct: 4 SRSIQTFPQPDTSVIN-GPDRPAGIPDPAGTTVAGGGAVYTVV 45
>2zkq_b 40S ribosomal protein SA; protein-RNA complex, 40S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 295
Score = 33.1 bits (75), Expect = 0.16
Identities = 22/101 (21%), Positives = 29/101 (28%), Gaps = 1/101 (0%)
Query: 395 EPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVP-SPTTPVESPAASTPV 453
P V P P E A T+ AP P E S V
Sbjct: 193 HPWEVMPDLYFYRDPEEIEKEEQAAAEKAVTKEEFQGEWTAPAPEFTAAQPEVADWSEGV 252
Query: 454 EAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVE 494
+ P+ P+ T SA P+ + AP + E
Sbjct: 253 QVPSVPIQQFPTEDWSAQPSTEDWSAAPTAQATEWVGTTTE 293
Score = 29.7 bits (66), Expect = 2.4
Identities = 16/119 (13%), Positives = 27/119 (22%), Gaps = 3/119 (2%)
Query: 342 GKDSWDNIWKKISQTIEPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSP 401
G S +W +++ + + + E K + V+
Sbjct: 167 GAHSVGLMWWMLAREVLRMR--GTISREHPWEVMPDLYFYRDPEEIEKEEQAAAEKAVTK 224
Query: 402 VPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVES-PAASTPVEAPAAP 459
P T P P PT + P+ AP A
Sbjct: 225 EEFQGEWTAPAPEFTAAQPEVADWSEGVQVPSVPIQQFPTEDWSAQPSTEDWSAAPTAQ 283
Score = 28.5 bits (63), Expect = 5.9
Identities = 20/85 (23%), Positives = 26/85 (30%)
Query: 358 EPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETT 417
E + ++ E + PE A V PS P PTE
Sbjct: 208 EEIEKEEQAAAEKAVTKEEFQGEWTAPAPEFTAAQPEVADWSEGVQVPSVPIQQFPTEDW 267
Query: 418 PAPVSTPTETAAASPVAAPVPSPTT 442
A ST +AA + A TT
Sbjct: 268 SAQPSTEDWSAAPTAQATEWVGTTT 292
>3oun_A Putative uncharacterized protein TB39.8; peptidoglycan, Ser/Thr
kinase, pseudokinase, FHA domain, REG phosphorylation;
HET: TPO; 2.71A {Mycobacterium tuberculosis}
Length = 157
Score = 32.6 bits (74), Expect = 0.17
Identities = 8/65 (12%), Positives = 16/65 (24%), Gaps = 4/65 (6%)
Query: 448 AASTPVEAPAAPVDTPVTPV----ASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPT 503
+S ++ + + + A P + P PAP
Sbjct: 2 GSSQHHHHHSSGLVPRGSHMPQGGGYAEPAGRDYDYGQSGAPDYGQPAPGGYSGYGQGGY 61
Query: 504 PTASP 508
+A
Sbjct: 62 GSAGT 66
>2vg3_A Undecaprenyl pyrophosphate synthetase; transferase, cell WALL
biogenesis/degradation, cell cycle, P transferase; HET:
GPP; 1.8A {Mycobacterium tuberculosis} PDB: 2vg2_A*
2vg4_A
Length = 284
Score = 32.9 bits (76), Expect = 0.19
Identities = 15/54 (27%), Positives = 18/54 (33%), Gaps = 8/54 (14%)
Query: 454 EAPAAPVDTPVTPVASA--------PPTPAETPGAPEPVPSPAAPAPVETPSVP 499
+ P AP D P P S P P P P S AA + +P
Sbjct: 3 QLPPAPDDYPTFPDTSTWPVVFPELPAAPYGGPCRPPQHTSKAAAPRIPADRLP 56
Score = 29.1 bits (66), Expect = 3.4
Identities = 10/47 (21%), Positives = 13/47 (27%), Gaps = 2/47 (4%)
Query: 469 SAPPTPAETPGAPEPVPSPAA--PAPVETPSVPAEPTPTASPVQTSQ 513
PP P + P P+ P P P P S +
Sbjct: 3 QLPPAPDDYPTFPDTSTWPVVFPELPAAPYGGPCRPPQHTSKAAAPR 49
>1d3c_A Cyclodextrin glycosyltransferase; alpha-amylase, product complex,
oligosaccharide, family 13 glycosyl hydrolase,
transglycosylation; HET: GLC; 1.78A {Bacillus circulans}
SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1cxf_A*
1cxk_A* 1cdg_A* 1cxe_A* 1cxh_A* 1cxi_A* 2cxg_A* 1cgv_A*
2dij_A* 1cgy_A* 1kck_A* 1cgx_A* 1cxl_A* 1cgw_A* 1tcm_A
1kcl_A* 1eo5_A* 1eo7_A* 1dtu_A* 1ot1_A* ...
Length = 686
Score = 33.3 bits (76), Expect = 0.25
Identities = 29/156 (18%), Positives = 41/156 (26%), Gaps = 4/156 (2%)
Query: 349 IWKKISQTIEPS----KPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPA 404
+W+ + T P+ P A+P T + SS TV A S +
Sbjct: 489 VWQYTAATATPTIGHVGPMMAKPGVTITIDGRGFGSSKGTVYFGTTAVSGADITSWEDTQ 548
Query: 405 PSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPV 464
A V+ TA+ V S + A V
Sbjct: 549 IKVKIPAVAGGNYNIKVANAAGTASNVYDNFEVLSGDQVSVRFVVNNATTALGQNVYLTG 608
Query: 465 TPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPA 500
+ PA+ G P SVPA
Sbjct: 609 SVSELGNWDPAKAIGPMYNQVVYQYPNWYYDVSVPA 644
>3ghp_A Cellulosomal scaffoldin adaptor protein B; linker segments, beta
barrel, alpha helix, beta flaps, structural protein;
2.49A {Acetivibrio cellulolyticus}
Length = 227
Score = 32.2 bits (72), Expect = 0.27
Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Query: 410 VATPTETTPAPVSTPTETAAASPVAAPVPSPT---TPVESPAASTPVEAPA 457
V P E AP++T T T + A+ +P+ T TP + + P P
Sbjct: 166 VIQPGEINSAPIATATPTTKPTAFASTMPTVTLTPTPTATTTTTIPTAVPT 216
Score = 31.4 bits (70), Expect = 0.56
Identities = 12/56 (21%), Positives = 22/56 (39%), Gaps = 3/56 (5%)
Query: 394 VEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAA 449
++P ++ P + P PT + PT T +P A + T V + +
Sbjct: 167 IQPGEINSAPIATATPTTKPT---AFASTMPTVTLTPTPTATTTTTIPTAVPTTES 219
Score = 29.1 bits (64), Expect = 2.8
Identities = 15/62 (24%), Positives = 22/62 (35%), Gaps = 4/62 (6%)
Query: 436 PVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVET 495
+ S ++ ++ A A P P T AS PT TP P + P
Sbjct: 159 RIQSGYFVIQPGEINSAPIATATPTTKP-TAFASTMPTVTLTP---TPTATTTTTIPTAV 214
Query: 496 PS 497
P+
Sbjct: 215 PT 216
Score = 27.5 bits (60), Expect = 9.7
Identities = 10/54 (18%), Positives = 17/54 (31%), Gaps = 2/54 (3%)
Query: 388 VKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPT 441
++P + P A+ T TPT T + + VP+
Sbjct: 167 IQPGEINSAPIATATPTTKPTAFASTM-PTVTLTPTPTAT-TTTTIPTAVPTTE 218
>1rh1_A Colicin B; FEPA, cytotoxic bacterial protein, TONB, antibiotic;
2.50A {Escherichia coli} SCOP: b.110.1.1 f.1.1.1
Length = 511
Score = 32.8 bits (73), Expect = 0.30
Identities = 22/166 (13%), Positives = 40/166 (24%), Gaps = 1/166 (0%)
Query: 354 SQTIEPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATP 413
P S + + + V + + S
Sbjct: 80 EGDWSGWSVSVHSPWGNEKVSAARTVLENGLRGGLPEPSRPAAVSFARLEPASGNEQKII 139
Query: 414 TETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVT-PVASAPP 472
+ T+ A+ AA P + + A P+T PV A P
Sbjct: 140 RLMVTQQLEQVTDIPASQLPAAGNNVPVKYRLTDLMQNGTQYMAIIGGIPMTVPVVDAVP 199
Query: 473 TPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQTSQPCAST 518
P + +AP P + +PV+++
Sbjct: 200 VPDRSRPGTNIKDVYSAPVSPNLPDLVLSVGQMNTPVRSNPEIQED 245
Score = 30.1 bits (66), Expect = 1.9
Identities = 17/129 (13%), Positives = 29/129 (22%)
Query: 366 EPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPT 425
EP+ + + + AS P + VP T +
Sbjct: 129 EPASGNEQKIIRLMVTQQLEQVTDIPASQLPAAGNNVPVKYRLTDLMQNGTQYMAIIGGI 188
Query: 426 ETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVP 485
A PVP + P + D ++ P + + V
Sbjct: 189 PMTVPVVDAVPVPDRSRPGTNIKDVYSAPVSPNLPDLVLSVGQMNTPVRSNPEIQEDGVI 248
Query: 486 SPAAPAPVE 494
S
Sbjct: 249 SETGNYVEA 257
>3iyo_A Capsid protein; amino acid sequence, cryoelectron microscopy,
dimerization, image processing, computer-assist
molecular sequence DATA; 10.50A {Hepatitis e virus}
Length = 660
Score = 32.6 bits (73), Expect = 0.36
Identities = 22/110 (20%), Positives = 30/110 (27%), Gaps = 2/110 (1%)
Query: 403 PAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDT 462
P + + + + P A P PT P + P
Sbjct: 21 PPGQPSGRRRGRRSGGSGGGFWGDRVDSQPFAIPYIHPTNPFAPDVTAAAGAGPRVR--Q 78
Query: 463 PVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQTS 512
P P+ SA A+ P A A T PA TP V +
Sbjct: 79 PARPLGSAWRDQAQRPAVASRRRPTTAGAAPLTAVAPAHDTPPVPDVDSR 128
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC
repeat; 2.70A {Saccharomyces cerevisiae}
Length = 963
Score = 32.5 bits (73), Expect = 0.42
Identities = 21/157 (13%), Positives = 38/157 (24%), Gaps = 32/157 (20%)
Query: 351 KKISQTIEPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPV 410
+ ++ + K + E EK++ +K + + V
Sbjct: 820 RAKARAKKTKKEKGPNEEEKKKEHEEKEKERETNKKGIKETKENDEEFYKNKYSSKPYKV 879
Query: 411 ATPTETTPAPVSTPTETAAA--SPVAAPVPS-------------PTTPVESPAASTPVEA 455
T P + PV + P +E+ V A
Sbjct: 880 DNMTRILPQQSRYISFIKDDRFVPVRKFKGNNGVVVLRDREPKEPVALIETVRQMKDVNA 939
Query: 456 PAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAP 492
P PTP + + P+A P
Sbjct: 940 P--------------LPTPFKVDDNVDF---PSALQP 959
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring
E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A
{Saccharomyces cerevisiae}
Length = 371
Score = 31.8 bits (71), Expect = 0.46
Identities = 12/98 (12%), Positives = 21/98 (21%), Gaps = 2/98 (2%)
Query: 417 TPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAE 476
+ P+S T + P SP+ +SP ++ P A + +
Sbjct: 1 SLTPLSAITVRSMEGPPTVQQQSPSVIRQSPTQRRKTSTTSSTSRAPPPTNPDASSSSSS 60
Query: 477 TPGAP-EPVPSPAAPAPVETPSVPAEPTPTASPVQTSQ 513
SP
Sbjct: 61 FAVPTIHFKESPFYK-IQRLIPELVMNVEVTGGRGMCS 97
Score = 30.3 bits (67), Expect = 1.4
Identities = 12/88 (13%), Positives = 27/88 (30%), Gaps = 5/88 (5%)
Query: 392 ASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAAST 451
+ + V + P T +P+ +P + +S AP P+ S ++
Sbjct: 3 TPLSAITVRSMEGPPTVQQQSPSVIRQSPTQRRKTSTTSSTSRAPPPTNPDASSSSSSFA 62
Query: 452 P-----VEAPAAPVDTPVTPVASAPPTP 474
E+P + + +
Sbjct: 63 VPTIHFKESPFYKIQRLIPELVMNVEVT 90
>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein
structure initiative; HET: MSE; 1.47A {Corynebacterium
glutamicum atcc 13032}
Length = 317
Score = 31.5 bits (71), Expect = 0.55
Identities = 12/66 (18%), Positives = 19/66 (28%), Gaps = 1/66 (1%)
Query: 417 TPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAE 476
T S TE +A + P + + + A V+ + TP
Sbjct: 247 TEFFSSNSTEASAITRELLGGGVPAQ-YKDESWVRKFASGAQARHDGVSTLQMPSDTPQH 305
Query: 477 TPGAPE 482
PE
Sbjct: 306 PAETPE 311
>3vf0_A Vinculin, metavinculin; cytoskeletal F-actin binding protein, CEL
adhesion-protein binding complex; HET: EPE; 2.54A {Homo
sapiens}
Length = 283
Score = 31.6 bits (70), Expect = 0.57
Identities = 23/114 (20%), Positives = 32/114 (28%), Gaps = 7/114 (6%)
Query: 391 AASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAAS 450
A P+P VP P PP E P E A + P+ + A
Sbjct: 8 APPKPPLPEGEVPPPRPPPPEEKDEEFP-------EQKAGEVINQPMMMAARQLHDEARK 60
Query: 451 TPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTP 504
+ + + VA A A P + P + PS P
Sbjct: 61 WSSKPGIPAAEVGIGVVAEADAADAAGFPVPPDMEDDYEPELLLMPSNQPVNQP 114
>1o6w_A PRP40, PRE-mRNA processing protein PRP40; WW domain PAIR, nuclear
protein, mRNA splicing, ribonucleoprotein; NMR
{Saccharomyces cerevisiae} SCOP: b.72.1.1 b.72.1.1
Length = 75
Score = 29.1 bits (65), Expect = 0.62
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 272 PLPPGWEQARTAEGQVYY 289
GW+ A+TA+G+VYY
Sbjct: 40 LRENGWKAAKTADGKVYY 57
Score = 27.9 bits (62), Expect = 1.4
Identities = 6/14 (42%), Positives = 11/14 (78%)
Query: 276 GWEQARTAEGQVYY 289
W++A+ A G++YY
Sbjct: 3 IWKEAKDASGRIYY 16
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase,
herbicide, sulfonylurea, thiamin diphosphate, FAD,
inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A
{Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5
c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*
Length = 677
Score = 31.9 bits (73), Expect = 0.65
Identities = 7/71 (9%), Positives = 16/71 (22%)
Query: 364 AAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVST 423
++ S E + P + + APS P+ ++
Sbjct: 8 SSGLVPRGSGMKETAAAKFERQHMDSPDLGTDDDDKAMGSAPSFNVDPLEQPAEPSKLAK 67
Query: 424 PTETAAASPVA 434
+
Sbjct: 68 KLRAEPDMDTS 78
Score = 29.5 bits (67), Expect = 2.8
Identities = 8/70 (11%), Positives = 11/70 (15%), Gaps = 1/70 (1%)
Query: 446 SPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSP-AAPAPVETPSVPAEPTP 504
A + S + A PS P
Sbjct: 10 GLVPRGSGMKETAAAKFERQHMDSPDLGTDDDDKAMGSAPSFNVDPLEQPAEPSKLAKKL 69
Query: 505 TASPVQTSQP 514
A P +
Sbjct: 70 RAEPDMDTSF 79
>1wcz_A Glutamyl endopeptidase; virulence factor, hydrolase; 2.00A
{Staphylococcus aureus} SCOP: b.47.1.1
Length = 268
Score = 31.2 bits (70), Expect = 0.72
Identities = 9/53 (16%), Positives = 12/53 (22%), Gaps = 3/53 (5%)
Query: 456 PAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASP 508
P P P P P P + P+ P P +
Sbjct: 211 EDINFANDDQPNNPDNPDNPNNPDNPNNPDEPNNP---DNPNNPDNPDNGDNN 260
>2o8l_A V8 protease, taphylococcal serine; serine protease, enzyme,
hydrolase; 1.50A {Staphylococcus aureus} SCOP: b.47.1.1
PDB: 1qy6_A
Length = 274
Score = 30.9 bits (69), Expect = 0.82
Identities = 9/44 (20%), Positives = 13/44 (29%)
Query: 461 DTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTP 504
D P P P + P P+ +P P + P
Sbjct: 225 DNPDNPNNPDNPNNPDNPNNPDEPNNPDNPNNPDNPDNGDNNNS 268
Score = 30.2 bits (67), Expect = 1.4
Identities = 11/50 (22%), Positives = 17/50 (34%)
Query: 459 PVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASP 508
D P P P + P P+ +P P + P+ P P +
Sbjct: 217 NDDQPNNPDNPDNPNNPDNPNNPDNPNNPDEPNNPDNPNNPDNPDNGDNN 266
>2wsc_D Photosystem I reaction center subunit II, chloroplastic;
photosynthesis, electron transfer, membrane proteins,
large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A
{Spinacia oleracea} PDB: 2wse_D* 2wsf_D* 2o01_D* 3lw5_D*
Length = 212
Score = 30.6 bits (68), Expect = 0.91
Identities = 19/81 (23%), Positives = 31/81 (38%), Gaps = 3/81 (3%)
Query: 417 TPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAE 476
TPA + + + ++A P+ + TT + P+A T PA+ + T A+ A
Sbjct: 5 TPATLFSRSSLSSAKPIETRL---TTSFKQPSAVTFASKPASRLHTIRAAAAAEGKAAAA 61
Query: 477 TPGAPEPVPSPAAPAPVETPS 497
T TPS
Sbjct: 62 TETKEATKAFTPPELDPNTPS 82
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.3 bits (67), Expect = 0.93
Identities = 5/28 (17%), Positives = 14/28 (50%), Gaps = 5/28 (17%)
Query: 373 ESTEKKESS-----PPTVPEVKPAASVE 395
++ +K ++S + P + A++E
Sbjct: 20 QALKKLQASLKLYADDSAPALAIKATME 47
Score = 27.6 bits (60), Expect = 6.5
Identities = 5/15 (33%), Positives = 8/15 (53%)
Query: 480 APEPVPSPAAPAPVE 494
A + P+ A A +E
Sbjct: 33 ADDSAPALAIKATME 47
Score = 27.2 bits (59), Expect = 9.6
Identities = 5/26 (19%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Query: 351 KKISQTIEPSKPPAAEPSQTTSESTE 376
KK+ +++ +A P+ + E
Sbjct: 23 KKLQASLKLYADDSA-PALAIKATME 47
>2es4_D Lipase chaperone; protein-protein complex, steric chaperone,
triacylglycerol hydrolase, all alpha helix protein, A/B
hydrolase fold; 1.85A {Burkholderia glumae} SCOP:
a.137.15.1
Length = 332
Score = 30.5 bits (68), Expect = 1.1
Identities = 12/58 (20%), Positives = 20/58 (34%)
Query: 427 TAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPV 484
AAP P+P V A+ A + + + A+ P A + P+
Sbjct: 16 IEGRHMPAAPSPAPAGAVAGGPAAGVPAAASGAAEAAMPLPAALPGALAGSHAPRLPL 73
>3m5q_A Manganese peroxidase 1; heme, Mn(II)-binding site, Ca(II)-binding
site, glycosylation, ultrahigh resolution, calcium; HET:
NAG MAN HEM; 0.93A {Phanerochaete chrysosporium} PDB:
1mnp_A* 1yyg_A* 1yzp_A* 1yzr_A* 1yyd_A* 3m8m_A* 1mn1_A*
1mn2_A*
Length = 357
Score = 30.7 bits (69), Expect = 1.1
Identities = 13/64 (20%), Positives = 17/64 (26%), Gaps = 4/64 (6%)
Query: 433 VAAPVPSPTTPVESPAASTP--VEAPAAPVDTPVTPVASAPPT--PAETPGAPEPVPSPA 488
V P P+ P PA++ P +E P A P P
Sbjct: 293 VPVPKPATGQPAMFPASTGPQDLELSCPSERFPTLTTQPGASQSLIAHCPDGSMSCPGVQ 352
Query: 489 APAP 492
P
Sbjct: 353 FNGP 356
Score = 30.7 bits (69), Expect = 1.1
Identities = 15/66 (22%), Positives = 19/66 (28%), Gaps = 1/66 (1%)
Query: 439 SPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSV 498
S PV PA P PA+ + + P P S A P + S
Sbjct: 290 SDVVPVPKPATGQPAMFPASTGPQDLELSCPSERFPT-LTTQPGASQSLIAHCPDGSMSC 348
Query: 499 PAEPTP 504
P
Sbjct: 349 PGVQFN 354
Score = 28.3 bits (63), Expect = 7.1
Identities = 11/67 (16%), Positives = 22/67 (32%), Gaps = 2/67 (2%)
Query: 387 EVKPAASVEPVPVSPVPAPSTPP-VATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVE 445
+V P + PA + P + + P + T+ A+ + A P +
Sbjct: 291 DVVPVPKPATGQPAMFPASTGPQDLELSCPSERFP-TLTTQPGASQSLIAHCPDGSMSCP 349
Query: 446 SPAASTP 452
+ P
Sbjct: 350 GVQFNGP 356
>2j89_A Methionine sulfoxide reductase A; MSRA, poplar, oxidoreductase;
1.7A {Populus trichocarpa}
Length = 261
Score = 30.5 bits (69), Expect = 1.1
Identities = 19/97 (19%), Positives = 28/97 (28%), Gaps = 11/97 (11%)
Query: 406 STPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVT 465
ST +T + +T P+ + SP A S + P P P+ P+
Sbjct: 6 STHLSST-STSTTTPLLLLS-KPFLSPSAKSQLSHSKPFNFPRTLKPISYYKPPMA---- 59
Query: 466 PVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEP 502
G P PS P + P
Sbjct: 60 -----NILSKLGFGTRSPDPSTMDPTIPQGPDDDLPA 91
>2wd6_A Agglutinin receptor; cell adhesion, secreted, V-region, cell WALL,
AG I/II protei surface adhesin, peptidoglycan-anchor;
2.30A {Streptococcus gordonii}
Length = 349
Score = 30.5 bits (68), Expect = 1.2
Identities = 9/45 (20%), Positives = 9/45 (20%)
Query: 464 VTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASP 508
P P P PS EPTP
Sbjct: 304 NAIGVPTKPVAPTAPTQPMYETEKPLEPAPVAPSYENEPTPPVKT 348
Score = 30.5 bits (68), Expect = 1.2
Identities = 13/68 (19%), Positives = 18/68 (26%), Gaps = 5/68 (7%)
Query: 341 LGKDSWDNIWKKISQTIEPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVS 400
+ NIW + I P T + T ++PA
Sbjct: 287 MASSKSGNIWFAFNSNINAIGVPTK-----PVAPTAPTQPMYETEKPLEPAPVAPSYENE 341
Query: 401 PVPAPSTP 408
P P TP
Sbjct: 342 PTPPVKTP 349
Score = 29.0 bits (64), Expect = 3.9
Identities = 10/48 (20%), Positives = 12/48 (25%), Gaps = 3/48 (6%)
Query: 467 VASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQTSQP 514
A PT P AP P P P+ P +
Sbjct: 304 NAIGVPTK---PVAPTAPTQPMYETEKPLEPAPVAPSYENEPTPPVKT 348
Score = 29.0 bits (64), Expect = 3.9
Identities = 10/47 (21%), Positives = 11/47 (23%)
Query: 397 VPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTP 443
+ VP P A A S P P TP
Sbjct: 303 INAIGVPTKPVAPTAPTQPMYETEKPLEPAPVAPSYENEPTPPVKTP 349
Score = 28.6 bits (63), Expect = 4.6
Identities = 12/49 (24%), Positives = 18/49 (36%), Gaps = 1/49 (2%)
Query: 400 SPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVP-SPTTPVESP 447
S + A P P+ + +PVA PT PV++P
Sbjct: 301 SNINAIGVPTKPVAPTAPTQPMYETEKPLEPAPVAPSYENEPTPPVKTP 349
Score = 28.6 bits (63), Expect = 4.8
Identities = 14/55 (25%), Positives = 18/55 (32%), Gaps = 6/55 (10%)
Query: 442 TPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETP 496
+ + + T AP AP P P EP P PV+TP
Sbjct: 301 SNINAIGVPTKPVAPTAPTQPMYETEKPLEPAPVAPSYENEPTP------PVKTP 349
Score = 28.6 bits (63), Expect = 5.8
Identities = 13/51 (25%), Positives = 19/51 (37%), Gaps = 1/51 (1%)
Query: 374 STEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTP 424
++ PT P V P A +P+ + P P + PV TP
Sbjct: 300 NSNINAIGVPTKP-VAPTAPTQPMYETEKPLEPAPVAPSYENEPTPPVKTP 349
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel
beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A
{Aspergillus aculeatus} SCOP: b.80.1.3
Length = 422
Score = 30.5 bits (69), Expect = 1.2
Identities = 15/60 (25%), Positives = 20/60 (33%), Gaps = 1/60 (1%)
Query: 398 PVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPA 457
S +T V A + + A A + A +P PT P TP A A
Sbjct: 363 SSSHTSYTTTSTVTAAPSGYSAT-TMAADLATAFGLTASIPIPTIPTSFYPGLTPYSALA 421
>1lw3_A Myotubularin-related protein 2; protein-phosphate complex,
hydrolase; 2.30A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3
PDB: 1m7r_A
Length = 657
Score = 29.6 bits (65), Expect = 2.7
Identities = 12/74 (16%), Positives = 25/74 (33%)
Query: 131 WPDCFNSGVFVFKPSESTYNALVEFALVNGSFDDATRQLQKPLNMRNLPKSFFQPPSTGS 190
W + KP E +N E +LQ+ ++ R+ S
Sbjct: 579 WVGYYIRWNPRMKPQEPIHNRYKELLAKRAELQKKVEELQREISNRSTSSSERASSPAQC 638
Query: 191 RSPSVSSISHSREN 204
+P + ++ + E+
Sbjct: 639 VTPVQTVVAAALEH 652
>2wjs_A Laminin subunit alpha-2; integrin, secreted, coiled coil,
glycoprotein, laminin EGF-like domain, extracellular
matrix, laminin G-like domain; HET: NAG; 2.80A {Mus
musculus}
Length = 608
Score = 29.3 bits (65), Expect = 3.4
Identities = 16/66 (24%), Positives = 22/66 (33%), Gaps = 4/66 (6%)
Query: 443 PVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEP 502
P A + P + PAE P+PVP+PA P P P++ P
Sbjct: 544 DFAQPIAFKNADIGRCTYQKPRED--ESEAVPAEVIVQPQPVPTPAFPFP--APTMVHGP 599
Query: 503 TPTASP 508
Sbjct: 600 AAAHHH 605
>2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2;
short-chain dehydrogenase/reductase, rossman fold; 1.95A
{Streptomyces fradiae}
Length = 511
Score = 29.0 bits (65), Expect = 4.0
Identities = 5/71 (7%), Positives = 12/71 (16%)
Query: 436 PVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVET 495
+ + + AP + + + + E E
Sbjct: 35 ALTESSPVRPHSIGRCLLVAPPTTDGELLDGLTTVLSERGASVARLEVPIGARRAEVAEL 94
Query: 496 PSVPAEPTPTA 506
E
Sbjct: 95 LKPSMESAGEE 105
>2cp6_A Restin; microtubule binding, cytoskeleton associated protein,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.34.10.1
Length = 172
Score = 28.5 bits (63), Expect = 4.0
Identities = 8/58 (13%), Positives = 20/58 (34%)
Query: 379 ESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAP 436
++P + S +PS +++ + + S P+ T + + P
Sbjct: 112 STTPAKAKANAVRRVMATTSASLKRSPSASSLSSMSSVASSVSSRPSRTGLLTETSGP 169
>2pqh_A Spectrin alpha chain, brain; SH3 domain, chimera, , structural
protein; 1.75A {Gallus gallus}
Length = 80
Score = 27.0 bits (60), Expect = 4.0
Identities = 9/26 (34%), Positives = 11/26 (42%)
Query: 464 VTPVASAPPTPAETPGAPEPVPSPAA 489
V + A E G P PVP +A
Sbjct: 54 VKKLDPAQSASRENLGGPPPVPPYSA 79
>2ysi_A Transcription elongation regulator 1; Ca150, FBP28, WW domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.22.1.1
Length = 40
Score = 25.9 bits (57), Expect = 4.0
Identities = 6/20 (30%), Positives = 10/20 (50%)
Query: 270 LGPLPPGWEQARTAEGQVYY 289
W + +T +G+VYY
Sbjct: 5 SSGTEEIWVENKTPDGKVYY 24
>1q1q_A SULT2B1A, sulfotransferase family, cytosolic, 2B, member 1 isoform
A; pregnenolone, PAP; HET: A3P NHE; 2.91A {Homo sapiens}
SCOP: c.37.1.5
Length = 350
Score = 29.1 bits (65), Expect = 4.1
Identities = 11/46 (23%), Positives = 15/46 (32%), Gaps = 2/46 (4%)
Query: 454 EAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSP--AAPAPVETPS 497
+ +P P + E P PSP A+ P PS
Sbjct: 305 DPEPSPEPEPKPSLEPNTSLEREPRPNSSPSPSPGQASETPHPRPS 350
>1hyn_P BAND 3 anion transport protein; membrane protein; 2.60A {Homo
sapiens} SCOP: d.112.1.2
Length = 379
Score = 29.0 bits (64), Expect = 4.4
Identities = 17/116 (14%), Positives = 34/116 (29%), Gaps = 14/116 (12%)
Query: 200 HSRENSADSAFGTSTITSTSSSVSGGGLQIAHPRAHSSPASLQQTYASAQQQHQQHLKQR 259
HS ++ G T S L H + +Q + + ++
Sbjct: 161 HSHAGELEALGGVKPAVLTRSGDPSQPLLPQHSSLETQLFC-EQGDGGTEGHSPSGILEK 219
Query: 260 SYDITTVLDELGPLPPGWEQARTAEGQVYYLKGVLFMYTRLQAGLARALAQVPIGT 315
+PP E G+ +L+ + + RLQ ++P+
Sbjct: 220 -------------IPPDSEATLVLVGRADFLEQPVLGFVRLQEAAELEAVELPVPI 262
>1jer_A Cucumber stellacyanin; electron transport, copper, glycoprotein,
hydroxylation; 1.60A {Cucumis sativus} SCOP: b.6.1.1
Length = 138
Score = 27.7 bits (61), Expect = 4.7
Identities = 8/32 (25%), Positives = 15/32 (46%)
Query: 417 TPAPVSTPTETAAASPVAAPVPSPTTPVESPA 448
A + ++SP ++ +P P P SP+
Sbjct: 107 VAANATVSMPPPSSSPPSSVMPPPVMPPPSPS 138
>1ywi_A Formin-binding protein 3; WW domain, class II, proline-rich
peptides, protein-protein interactions, structural
protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1ywj_A
1zr7_A 2dyf_A
Length = 41
Score = 25.6 bits (56), Expect = 4.9
Identities = 5/21 (23%), Positives = 11/21 (52%)
Query: 269 ELGPLPPGWEQARTAEGQVYY 289
+G W + ++ +G+ YY
Sbjct: 6 SVGSAKSMWTEHKSPDGRTYY 26
>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation,
staurosporine, transfe; HET: STU; 2.70A {Homo sapiens}
SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C
Length = 400
Score = 28.5 bits (64), Expect = 4.9
Identities = 14/46 (30%), Positives = 17/46 (36%)
Query: 469 SAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQTSQP 514
S +P AP P P P PA P+ P P P P +
Sbjct: 5 SQGQSPPVPFPAPAPPPQPPTPALPHPPAQPPPPPPQQFPQFHVKS 50
>1jk0_A RNR Y2, ribonucleoside-diphosphate reductase small chain 1;
ribonucleotide reductase, oxidoreductase; 2.80A
{Saccharomyces cerevisiae} SCOP: a.25.1.2 PDB: 1smq_A
Length = 419
Score = 28.8 bits (64), Expect = 5.1
Identities = 7/53 (13%), Positives = 15/53 (28%), Gaps = 1/53 (1%)
Query: 407 TPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAP 459
P + P TP++ AA + + + + + E
Sbjct: 10 HSSGLVPR-GSHMPKETPSKAAADALSDLEIKDSKSNLNKELETLREENRVKS 61
>3iu4_H CHP3 FAB heavy chain; antibody, ganglioside, idiotype, immune
system; 1.75A {Mus musculus} PDB: 1ibg_H* 3iy6_B
Length = 263
Score = 28.3 bits (64), Expect = 6.0
Identities = 10/69 (14%), Positives = 18/69 (26%), Gaps = 11/69 (15%)
Query: 437 VPSPTTP-------VESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAA 489
VPS + V ++T V+ P + A+ +
Sbjct: 193 VPSSSLGTQTYICNVNHKPSNTKVDKKVEPAQGGRVS----AGSQAQRSCLDASRLCSPS 248
Query: 490 PAPVETPSV 498
P P +
Sbjct: 249 PGQQGRPRL 257
>2g6z_A Dual specificity protein phosphatase 5; alpha/beta, hydrolase;
2.70A {Homo sapiens}
Length = 211
Score = 28.2 bits (63), Expect = 6.1
Identities = 11/62 (17%), Positives = 17/62 (27%), Gaps = 1/62 (1%)
Query: 376 EKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTET-TPAPVSTPTETAAASPVA 434
PP+ +S+ + P P P P + + SPVA
Sbjct: 147 STPNPQPPSCQGEAAGSSLIGHLQTLSPDMQGAYCTFPASVLAPVPTHSTVSELSRSPVA 206
Query: 435 AP 436
Sbjct: 207 TA 208
>1jbq_A B, cystathionine beta-synthase, serine sulfhydrase; fold type II of
PLP enzymes, lyase; HET: HEM PLP; 2.60A {Homo sapiens}
SCOP: c.79.1.1 PDB: 1m54_A*
Length = 435
Score = 28.5 bits (64), Expect = 6.3
Identities = 16/95 (16%), Positives = 25/95 (26%), Gaps = 1/95 (1%)
Query: 402 VPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVD 461
+P+ + PT + P+ET A P + P + +
Sbjct: 2 IPSETPQAEVGPTSACGVSLGIPSETPQAEVGPTGCPHRSGPHSAKGSLEKGSPEDKEAK 61
Query: 462 TPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETP 496
P+ AP G P SP
Sbjct: 62 EPLWIRPDAPSRCTWQLGRPAS-ESPHHHTAPAKS 95
>3ne0_A Resuscitation promoting factor interacting protei; cell WALL,
peptidoglycan, hydrolase; 1.00A {Mycobacterium
tuberculosis} PDB: 3pbc_A 3s0q_A 2xiv_A*
Length = 214
Score = 28.0 bits (62), Expect = 6.7
Identities = 16/76 (21%), Positives = 20/76 (26%), Gaps = 1/76 (1%)
Query: 432 PVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPA 491
P +PS P + A V +A VT P APA
Sbjct: 11 PTLPMIPSANIPGDPIAVVNQVLGISAT-SAQVTANMGRKFLEQLGILQPTDTGITNAPA 69
Query: 492 PVETPSVPAEPTPTAS 507
+P AS
Sbjct: 70 GSAQGRIPRVYGRQAS 85
>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A
{Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A
Length = 417
Score = 28.4 bits (62), Expect = 6.8
Identities = 10/61 (16%), Positives = 17/61 (27%)
Query: 403 PAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDT 462
P + P + + P P +TP S + P E + +
Sbjct: 4 PIRTKPKSSMQIDNAPTPHNTPASVLNPSYLKNGNPVRAQAQEQDDKIGTINEEDILANQ 63
Query: 463 P 463
P
Sbjct: 64 P 64
>3pki_A NAD-dependent deacetylase sirtuin-6; ADP ribose, structural
genomics, structural genomics consortium, SGC,
hydrolase; HET: AR6; 2.04A {Homo sapiens} PDB: 3pkj_A*
Length = 355
Score = 28.2 bits (63), Expect = 7.0
Identities = 12/80 (15%), Positives = 20/80 (25%)
Query: 340 YLGKDSWDNIWKKISQTIEPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPV 399
+ G + + + P P E + S P +
Sbjct: 276 WDGPRVLERALPPLPRPPTPKLEPKEESPTRINGSIPAGPKQEPCAQHNGSEPASPKRER 335
Query: 400 SPVPAPSTPPVATPTETTPA 419
PAP PP + P+
Sbjct: 336 PTSPAPHRPPKRVKAKAVPS 355
>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody,
immune system; NMR {Homo sapiens}
Length = 512
Score = 28.1 bits (62), Expect = 7.7
Identities = 9/101 (8%), Positives = 20/101 (19%), Gaps = 1/101 (0%)
Query: 398 PVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPA 457
S +P + + + + A P+ T E
Sbjct: 218 TASKSKKEIFRWPESPKAQASSVPTAQPQAEGSLAKATTAPATTRNTGRGGEEKKKEKEK 277
Query: 458 APVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSV 498
P+ + G P+ + +
Sbjct: 278 -EEQEERETKTPECPSHTQPLGVYLLTPAVQDLWLRDKATF 317
>2ysc_A Amyloid beta A4 precursor protein-binding family B member 3;
Fe65-like protein 2, WW domain, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.72.1.1
Length = 39
Score = 25.0 bits (54), Expect = 7.8
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 268 DELGPLPPGWEQARTAEGQVYY 289
G LPPGW + A G Y+
Sbjct: 4 GSSGGLPPGWRKIHDAAGTYYW 25
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.311 0.126 0.372
Gapped
Lambda K H
0.267 0.0487 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,599,243
Number of extensions: 457034
Number of successful extensions: 1980
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1623
Number of HSP's successfully gapped: 334
Length of query: 518
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 420
Effective length of database: 3,965,535
Effective search space: 1665524700
Effective search space used: 1665524700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 59 (27.1 bits)