RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7288
(518 letters)
>d1ll2a_ c.68.1.14 (A:) Glycogenin {Rabbit (Oryctolagus cuniculus)
[TaxId: 9986]}
Length = 263
Score = 163 bits (413), Expect = 2e-47
Identities = 94/160 (58%), Positives = 118/160 (73%)
Query: 4 VTGTAWVTLATNDSYALGALVVANSLKRVNTVHDLAILITPGVTLAMKNELLKVFNFVKE 63
+T A+VTL TND+YA GALV+ +SLK+ T LA+L TP V+ M+ L VF+ V
Sbjct: 1 MTDQAFVTLTTNDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVFDEVIT 60
Query: 64 VDVFDSRDETNLRLLSRPDLGITFTKIHAWRLTQYSKCVFLDADVLIVQNCDELFDREEL 123
VD+ DS D +L L+ RP+LG+T TK+H W LTQYSKCVF+DAD L++ N D+LF+REEL
Sbjct: 61 VDILDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFEREEL 120
Query: 124 SAAPDAGWPDCFNSGVFVFKPSESTYNALVEFALVNGSFD 163
SAAPD GWPDCFNSGVFV++PS TYN L+ A GSFD
Sbjct: 121 SAAPDPGWPDCFNSGVFVYQPSVETYNQLLHVASEQGSFD 160
>d1ga8a_ c.68.1.4 (A:) Galactosyltransferase LgtC {Neisseria
meningitidis [TaxId: 487]}
Length = 282
Score = 83.4 bits (205), Expect = 2e-18
Identities = 29/165 (17%), Positives = 59/165 (35%), Gaps = 24/165 (14%)
Query: 10 VTLATNDSYALGALVVANSLKRVNTVHDLAI-LITPGVTLAMKNEL---LKVFNFVKEVD 65
+ A +D+YA V A S++ + ++ ++ G++ A + + L+
Sbjct: 3 IVFAADDNYAAYLCVAAKSVEAAHPDTEIRFHVLDAGISEANRAAVAANLRGGGGNIRFI 62
Query: 66 VFDSRDETNLRLLSRPDLGITFTKIHAWRL-TQYSKCVFLDADVLIVQNCDELFDRE--- 121
+ D L R T+ ++ K ++LD DVL+ + L+D +
Sbjct: 63 DVNPEDFAGFPLNIRHISITTYARLKLGEYIADCDKVLYLDIDVLVRDSLTPLWDTDLGD 122
Query: 122 -ELSAAPDAGWPDC---------------FNSGVFVFKPSESTYN 150
L A+ D FN+GV + + +
Sbjct: 123 NWLGASIDLFVERQEGYKQKIGMADGEYYFNAGVLLINLKKWRRH 167
>d1tk7a1 b.72.1.1 (A:1-45) Suppressor of deltex (Cg4244-pb) {Fruit
fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 45
Score = 44.3 bits (105), Expect = 4e-07
Identities = 11/23 (47%), Positives = 17/23 (73%)
Query: 267 LDELGPLPPGWEQARTAEGQVYY 289
+D LGPLP GWE+ ++ +VY+
Sbjct: 7 MDALGPLPDGWEKKIQSDNRVYF 29
>d1i5hw_ b.72.1.1 (W:) Ubiquitin ligase NEDD4 WWIII domain {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 50
Score = 42.4 bits (100), Expect = 2e-06
Identities = 11/22 (50%), Positives = 18/22 (81%)
Query: 268 DELGPLPPGWEQARTAEGQVYY 289
++LGPLPPGWE+ +G+V++
Sbjct: 7 NDLGPLPPGWEERTHTDGRVFF 28
>d2jmfa1 b.72.1.1 (A:521-553) Ubiquitin ligase NEDD4 WWIII domain
{fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 33
Score = 40.7 bits (96), Expect = 6e-06
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 271 GPLPPGWEQARTAEGQVYYL 290
GPLPPGWE TA G+ +++
Sbjct: 1 GPLPPGWEIRYTAAGERFFV 20
>d1jmqa_ b.72.1.1 (A:) Yap65 ww domain {Human (Homo sapiens) [TaxId:
9606]}
Length = 46
Score = 37.0 bits (86), Expect = 2e-04
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 267 LDELGPLPPGWEQARTAEGQVYYL 290
+ + PLP GWE A+T+ GQ Y+
Sbjct: 3 IPDDVPLPAGWEMAKTSSGQRYFK 26
>d1pina1 b.72.1.1 (A:6-39) Mitotic rotamase PIN1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 34
Score = 29.2 bits (66), Expect = 0.083
Identities = 10/18 (55%), Positives = 13/18 (72%), Gaps = 1/18 (5%)
Query: 273 LPPGWEQARTAE-GQVYY 289
LPPGWE+ + G+VYY
Sbjct: 2 LPPGWEKRMSRSSGRVYY 19
>d2gqba1 a.282.1.1 (A:1-130) Hypothetical protein RPA2825
{Rhodopseudomonas palustris [TaxId: 1076]}
Length = 130
Score = 31.3 bits (71), Expect = 0.095
Identities = 6/38 (15%), Positives = 11/38 (28%)
Query: 461 DTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSV 498
+P + P G P P A ++ +
Sbjct: 15 SAAASPGGAQAPATTGAAGTAPTAPQPTAAPSIDVAPI 52
Score = 31.3 bits (71), Expect = 0.098
Identities = 9/47 (19%), Positives = 15/47 (31%)
Query: 468 ASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQTSQP 514
A++P +P AP P PS+ P + +
Sbjct: 17 AASPGGAQAPATTGAAGTAPTAPQPTAAPSIDVAPILDKAVKAKGEK 63
Score = 29.7 bits (67), Expect = 0.32
Identities = 9/37 (24%), Positives = 15/37 (40%)
Query: 419 APVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEA 455
+ ++P A + A +PT P + A S V
Sbjct: 15 SAAASPGGAQAPATTGAAGTAPTAPQPTAAPSIDVAP 51
Score = 29.0 bits (65), Expect = 0.58
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 426 ETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVD 461
++AAASP A P+ T A + P A +D
Sbjct: 14 DSAAASPGGAQAPATTGA-AGTAPTAPQPTAAPSID 48
Score = 26.7 bits (59), Expect = 4.1
Identities = 5/31 (16%), Positives = 7/31 (22%)
Query: 386 PEVKPAASVEPVPVSPVPAPSTPPVATPTET 416
P + P T P T +
Sbjct: 16 AAASPGGAQAPATTGAAGTAPTAPQPTAAPS 46
Score = 26.3 bits (58), Expect = 5.8
Identities = 9/36 (25%), Positives = 12/36 (33%)
Query: 395 EPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAA 430
AP+T A T P P + P+ A
Sbjct: 16 AAASPGGAQAPATTGAAGTAPTAPQPTAAPSIDVAP 51
Score = 25.9 bits (57), Expect = 7.6
Identities = 12/53 (22%), Positives = 20/53 (37%), Gaps = 5/53 (9%)
Query: 347 DNIWKKISQTIEPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPV 399
I I + P A+ TT + + PT P+ A S++ P+
Sbjct: 5 GKIMSAIFGDSAAASPGGAQAPATTGAA-----GTAPTAPQPTAAPSIDVAPI 52
>d1q92a_ c.108.1.8 (A:) 5'(3')-deoxyribonucleotidase (dNT-2) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 195
Score = 30.6 bits (68), Expect = 0.29
Identities = 9/37 (24%), Positives = 14/37 (37%), Gaps = 4/37 (10%)
Query: 326 DHIHRQHWEEGHIDYLGKDSWDNIWKKISQTIEPSKP 362
H QH + SW + WK I ++ +P
Sbjct: 163 TACHNQHLQ-LQPPRRRLHSWADDWKAI---LDSKRP 195
>d1o6wa2 b.72.1.1 (A:30-75) Splicing factor prp40 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 46
Score = 26.7 bits (59), Expect = 0.92
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 269 ELGPLPPGWEQARTAEGQVYY 289
EL GW+ A+TA+G+VYY
Sbjct: 8 ELLLRENGWKAAKTADGKVYY 28
>d2rm0w1 b.72.1.1 (W:1-37) Formin binding protein FBP28 domain
{Domestic mouse (Mus musculus) [TaxId: 10090]}
Length = 37
Score = 26.3 bits (58), Expect = 1.1
Identities = 6/18 (33%), Positives = 10/18 (55%)
Query: 272 PLPPGWEQARTAEGQVYY 289
W + +TA+G+ YY
Sbjct: 3 TAVSEWTEYKTADGKTYY 20
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus
[TaxId: 5053]}
Length = 422
Score = 29.3 bits (65), Expect = 1.4
Identities = 13/56 (23%), Positives = 21/56 (37%)
Query: 400 SPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEA 455
S + +T T + + + + A A + A +P PT P TP A
Sbjct: 364 SSHTSYTTTSTVTAAPSGYSATTMAADLATAFGLTASIPIPTIPTSFYPGLTPYSA 419
Score = 27.7 bits (61), Expect = 4.1
Identities = 8/49 (16%), Positives = 16/49 (32%), Gaps = 1/49 (2%)
Query: 464 VTPVASAPPTPAETPGAPEPVPSPAAP-APVETPSVPAEPTPTASPVQT 511
T +A P+ + + A + P++P P +P
Sbjct: 371 TTSTVTAAPSGYSATTMAADLATAFGLTASIPIPTIPTSFYPGLTPYSA 419
>d1llpa_ a.93.1.1 (A:) Fungal peroxidase (ligninase) {White rot
basidiomycete (Phanerochaete chrysosporium) [TaxId:
5306]}
Length = 343
Score = 28.9 bits (64), Expect = 1.5
Identities = 15/57 (26%), Positives = 22/57 (38%), Gaps = 3/57 (5%)
Query: 432 PVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPA 488
P++ P+P P + + A +TP P P PA + A P P A
Sbjct: 290 PLSKPIPGNGPFSFFPPGKSHSDIEQACAETPF-PSLVTLPGPATSV-ARIP-PHKA 343
>d1yyda1 a.93.1.1 (A:1-357) Fungal peroxidase (ligninase)
{Basidomycetos fungus (Phanerochaete chrysosporium)
[TaxId: 5306]}
Length = 357
Score = 28.1 bits (62), Expect = 2.9
Identities = 12/50 (24%), Positives = 15/50 (30%), Gaps = 1/50 (2%)
Query: 443 PVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAP 492
PV PA P PA+ + + P P S A P
Sbjct: 294 PVPKPATGQPAMFPASTGPQDLELSCPSERFPT-LTTQPGASQSLIAHCP 342
>d1usra_ b.68.1.1 (A:) Paramyxovirus hemagglutinin-neuraminidase
head domain {Newcastle disease virus [TaxId: 11176]}
Length = 448
Score = 28.3 bits (63), Expect = 2.9
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 283 AEGQVYYLKGVLFMYTR 299
AEG++ + F+Y R
Sbjct: 277 AEGRILTVGTSHFLYQR 293
>d2e39a1 a.93.1.1 (A:9-344) Fungal peroxidase (ligninase)
{Arthromyces ramosus [TaxId: 5451]}
Length = 336
Score = 27.7 bits (61), Expect = 4.0
Identities = 14/50 (28%), Positives = 17/50 (34%), Gaps = 4/50 (8%)
Query: 393 SVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVA----APVP 438
V P VS AP P T + + S P A + AP P
Sbjct: 287 DVIPSAVSNNAAPVIPGGLTVDDIEVSCPSEPFPEIATASGPLPSLAPAP 336
>d2cp6a1 b.34.10.1 (A:8-167) Restin {Human (Homo sapiens) [TaxId:
9606]}
Length = 160
Score = 26.2 bits (57), Expect = 6.8
Identities = 7/57 (12%), Positives = 19/57 (33%)
Query: 378 KESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVA 434
++P + S +PS +++ + + S P+ T + +
Sbjct: 104 PSTTPAKAKANAVRRVMATTSASLKRSPSASSLSSMSSVASSVSSRPSRTGLLTETS 160
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.311 0.126 0.372
Gapped
Lambda K H
0.267 0.0661 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,824,207
Number of extensions: 85552
Number of successful extensions: 304
Number of sequences better than 10.0: 1
Number of HSP's gapped: 280
Number of HSP's successfully gapped: 51
Length of query: 518
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 429
Effective length of database: 1,185,626
Effective search space: 508633554
Effective search space used: 508633554
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.1 bits)