Query psy7291
Match_columns 158
No_of_seqs 173 out of 1433
Neff 8.2
Searched_HMMs 46136
Date Fri Aug 16 22:57:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7291.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7291hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG3958 Transketolase, C-termi 100.0 3.4E-31 7.3E-36 206.0 15.2 135 1-156 138-272 (312)
2 PLN02683 pyruvate dehydrogenas 100.0 5.3E-31 1.2E-35 214.5 16.6 140 1-155 168-307 (356)
3 CHL00144 odpB pyruvate dehydro 100.0 7.3E-31 1.6E-35 211.7 16.2 136 1-155 145-280 (327)
4 PRK09212 pyruvate dehydrogenas 100.0 2.5E-29 5.5E-34 202.8 16.6 136 1-155 145-280 (327)
5 PRK11892 pyruvate dehydrogenas 100.0 3.2E-29 7E-34 209.6 16.4 137 1-155 283-419 (464)
6 PTZ00182 3-methyl-2-oxobutanat 100.0 3.1E-29 6.8E-34 204.1 15.8 137 1-155 176-312 (355)
7 COG0022 AcoB Pyruvate/2-oxoglu 100.0 1.1E-28 2.5E-33 193.1 14.2 136 1-155 143-279 (324)
8 PLN02225 1-deoxy-D-xylulose-5- 100.0 1.4E-27 3.1E-32 206.2 16.7 136 1-156 510-646 (701)
9 COG1154 Dxs Deoxyxylulose-5-ph 100.0 2.5E-27 5.4E-32 199.2 15.6 136 1-156 445-581 (627)
10 TIGR00204 dxs 1-deoxy-D-xylulo 99.9 1.2E-26 2.6E-31 200.5 16.9 136 1-156 439-575 (617)
11 PLN02234 1-deoxy-D-xylulose-5- 99.9 6.8E-26 1.5E-30 195.2 16.6 136 1-156 486-623 (641)
12 PRK12315 1-deoxy-D-xylulose-5- 99.9 2.3E-25 5E-30 191.5 16.4 133 1-155 406-540 (581)
13 PLN02582 1-deoxy-D-xylulose-5- 99.9 3.5E-25 7.5E-30 192.1 16.7 136 1-155 485-621 (677)
14 PRK12571 1-deoxy-D-xylulose-5- 99.9 1.8E-24 4E-29 187.6 16.4 135 1-156 448-583 (641)
15 KOG0524|consensus 99.9 2E-24 4.4E-29 166.6 14.4 139 1-154 176-314 (359)
16 PRK05444 1-deoxy-D-xylulose-5- 99.9 4.8E-24 1E-28 183.5 15.4 131 1-156 408-539 (580)
17 PF02780 Transketolase_C: Tran 99.9 1.6E-23 3.4E-28 147.3 2.7 90 53-157 1-90 (124)
18 PLN02790 transketolase 99.8 7E-19 1.5E-23 153.3 13.5 126 1-145 481-612 (654)
19 TIGR00232 tktlase_bact transke 99.8 4.7E-19 1E-23 154.3 12.0 123 1-144 484-610 (653)
20 KOG0525|consensus 99.8 2E-19 4.3E-24 137.6 7.1 136 1-154 182-318 (362)
21 PRK05899 transketolase; Review 99.8 1.2E-18 2.6E-23 151.3 7.6 121 1-143 455-580 (624)
22 KOG0523|consensus 99.7 1.8E-17 4E-22 139.5 11.6 129 1-151 450-581 (632)
23 TIGR03186 AKGDH_not_PDH alpha- 99.7 1.3E-17 2.9E-22 147.5 11.1 136 1-154 655-817 (889)
24 PTZ00089 transketolase; Provis 99.7 2.3E-17 5E-22 143.9 10.3 121 1-141 491-616 (661)
25 PRK07119 2-ketoisovalerate fer 99.7 1.6E-16 3.6E-21 129.5 13.9 149 1-152 138-320 (352)
26 PRK12753 transketolase; Review 99.7 1.7E-16 3.7E-21 138.5 12.4 121 1-138 490-615 (663)
27 PRK08659 2-oxoglutarate ferred 99.7 2.2E-15 4.7E-20 123.9 14.8 150 1-152 138-347 (376)
28 TIGR03336 IOR_alpha indolepyru 99.7 1.4E-15 3.1E-20 131.6 13.4 150 1-155 130-304 (595)
29 PRK09627 oorA 2-oxoglutarate-a 99.7 2E-15 4.3E-20 124.0 13.1 80 71-152 269-348 (375)
30 PRK09405 aceE pyruvate dehydro 99.6 2E-15 4.3E-20 133.9 12.4 137 1-154 660-820 (891)
31 PRK12754 transketolase; Review 99.6 6.5E-15 1.4E-19 128.3 12.5 126 1-144 490-620 (663)
32 PRK09622 porA pyruvate flavodo 99.5 3.5E-14 7.6E-19 117.9 10.6 83 69-151 260-342 (407)
33 TIGR03710 OAFO_sf 2-oxoacid:ac 99.5 5.7E-14 1.2E-18 120.8 12.1 79 72-151 459-537 (562)
34 PRK13012 2-oxoacid dehydrogena 99.5 5.7E-14 1.2E-18 125.1 10.5 124 1-152 668-802 (896)
35 PRK09404 sucA 2-oxoglutarate d 99.5 7.8E-13 1.7E-17 118.4 13.3 134 1-152 741-883 (924)
36 PRK08366 vorA 2-ketoisovalerat 99.4 1.6E-12 3.5E-17 107.3 10.5 83 70-152 253-338 (390)
37 COG4231 Indolepyruvate ferredo 99.4 9.1E-12 2E-16 106.2 14.7 150 1-156 142-322 (640)
38 PRK08367 porA pyruvate ferredo 99.4 4.6E-12 1E-16 104.8 10.6 84 70-153 255-341 (394)
39 TIGR00239 2oxo_dh_E1 2-oxoglut 99.3 3E-11 6.5E-16 108.1 14.3 139 1-151 743-888 (929)
40 COG0021 TktA Transketolase [Ca 99.2 4.1E-10 9E-15 96.4 12.0 127 1-146 490-621 (663)
41 PRK13030 2-oxoacid ferredoxin 99.0 1.2E-09 2.5E-14 100.0 10.2 151 1-153 169-354 (1159)
42 PRK09193 indolepyruvate ferred 99.0 3.1E-09 6.8E-14 97.2 11.9 153 1-155 177-364 (1165)
43 PRK13029 2-oxoacid ferredoxin 99.0 9E-09 2E-13 94.2 12.6 153 1-155 180-367 (1186)
44 TIGR02176 pyruv_ox_red pyruvat 98.9 9.8E-09 2.1E-13 94.8 11.0 86 69-154 257-347 (1165)
45 COG0674 PorA Pyruvate:ferredox 98.6 2.4E-07 5.1E-12 76.2 8.8 72 75-146 255-327 (365)
46 PRK05261 putative phosphoketol 98.2 1.6E-05 3.4E-10 70.9 11.7 121 1-134 550-684 (785)
47 PRK12270 kgd alpha-ketoglutara 96.7 0.014 3E-07 53.5 9.3 129 1-143 1044-1178(1228)
48 TIGR00759 aceE pyruvate dehydr 95.9 0.036 7.9E-07 50.3 7.9 104 2-119 655-765 (885)
49 KOG0450|consensus 94.7 0.18 3.8E-06 45.0 7.9 131 2-144 826-963 (1017)
50 KOG0451|consensus 92.4 0.77 1.7E-05 40.2 7.7 129 1-144 731-867 (913)
51 PF09363 XFP_C: XFP C-terminal 91.9 1.5 3.3E-05 33.3 8.1 59 76-134 34-105 (203)
52 COG0567 SucA 2-oxoglutarate de 90.6 1.9 4.1E-05 39.6 8.7 127 1-144 723-857 (906)
53 cd03028 GRX_PICOT_like Glutare 90.5 1.4 3E-05 28.7 6.1 68 76-148 7-82 (90)
54 COG0075 Serine-pyruvate aminot 89.6 4.1 8.9E-05 34.0 9.4 77 76-155 80-161 (383)
55 cd01481 vWA_collagen_alpha3-VI 89.3 1.7 3.8E-05 31.5 6.4 55 79-136 110-164 (165)
56 COG2609 AceE Pyruvate dehydrog 89.1 2.5 5.5E-05 38.0 8.0 100 2-117 658-766 (887)
57 TIGR00365 monothiol glutaredox 88.6 2.1 4.6E-05 28.4 5.9 71 76-148 11-86 (97)
58 cd03033 ArsC_15kD Arsenate Red 87.4 2.2 4.8E-05 29.2 5.5 42 86-128 8-49 (113)
59 cd03027 GRX_DEP Glutaredoxin ( 87.1 2.5 5.5E-05 26.0 5.3 66 78-146 2-68 (73)
60 COG3957 Phosphoketolase [Carbo 86.8 1.3 2.7E-05 39.7 4.9 119 1-133 561-693 (793)
61 PF03960 ArsC: ArsC family; I 85.4 2.3 5.1E-05 28.7 4.8 42 86-128 4-45 (110)
62 PF03358 FMN_red: NADPH-depend 85.3 3.6 7.7E-05 29.0 5.9 66 85-152 14-94 (152)
63 COG0680 HyaD Ni,Fe-hydrogenase 84.4 3.1 6.8E-05 30.4 5.4 58 77-138 2-66 (160)
64 TIGR02189 GlrX-like_plant Glut 84.3 9.3 0.0002 25.3 7.3 66 76-145 7-77 (99)
65 cd03035 ArsC_Yffb Arsenate Red 83.9 3.5 7.6E-05 27.8 5.1 43 86-129 7-49 (105)
66 TIGR01616 nitro_assoc nitrogen 83.8 3.6 7.9E-05 28.8 5.3 41 86-127 9-49 (126)
67 cd01080 NAD_bind_m-THF_DH_Cycl 83.6 5.4 0.00012 29.3 6.4 50 76-133 44-93 (168)
68 PF01855 POR_N: Pyruvate flavo 83.5 0.89 1.9E-05 35.2 2.3 32 1-32 121-156 (230)
69 cd00860 ThrRS_anticodon ThrRS 83.4 9 0.00019 24.1 7.2 60 78-139 3-63 (91)
70 PRK10853 putative reductase; P 81.5 4.6 9.9E-05 27.9 5.0 42 86-128 8-49 (118)
71 cd06062 H2MP_MemB-H2up Endopep 80.8 9.3 0.0002 27.1 6.6 56 79-138 1-63 (146)
72 COG1393 ArsC Arsenate reductas 80.8 4.2 9.1E-05 28.1 4.6 43 86-129 9-51 (117)
73 cd03412 CbiK_N Anaerobic cobal 80.7 11 0.00024 26.2 6.8 74 79-153 3-95 (127)
74 TIGR02194 GlrX_NrdH Glutaredox 80.7 4.8 0.0001 24.7 4.5 59 86-145 7-65 (72)
75 cd03034 ArsC_ArsC Arsenate Red 80.1 6 0.00013 26.9 5.2 43 86-129 7-49 (112)
76 PF01565 FAD_binding_4: FAD bi 80.0 2.2 4.8E-05 29.6 3.1 28 1-28 4-31 (139)
77 PRK03767 NAD(P)H:quinone oxido 79.5 23 0.0005 26.4 9.5 68 84-154 12-95 (200)
78 TIGR00014 arsC arsenate reduct 79.4 6.5 0.00014 26.8 5.2 42 86-128 7-48 (114)
79 PRK10026 arsenate reductase; P 78.4 9 0.0002 27.4 5.8 42 86-128 10-51 (141)
80 cd00858 GlyRS_anticodon GlyRS 78.1 17 0.00037 24.7 7.1 59 76-138 26-88 (121)
81 cd06063 H2MP_Cyano-H2up This g 77.4 7 0.00015 27.8 5.1 56 79-138 1-62 (146)
82 PF03129 HGTP_anticodon: Antic 76.9 12 0.00026 23.9 5.8 56 78-136 1-61 (94)
83 PF10740 DUF2529: Protein of u 76.6 12 0.00026 27.8 6.1 64 76-142 82-151 (172)
84 PRK10264 hydrogenase 1 maturat 76.2 14 0.00031 27.8 6.7 59 76-138 3-68 (195)
85 PRK10466 hybD hydrogenase 2 ma 76.1 19 0.00042 26.1 7.2 57 78-138 2-65 (164)
86 cd00518 H2MP Hydrogenase speci 76.0 14 0.0003 25.9 6.3 54 81-138 2-61 (139)
87 PRK13344 spxA transcriptional 75.8 11 0.00023 26.6 5.6 42 86-128 8-49 (132)
88 PRK11200 grxA glutaredoxin 1; 75.0 18 0.00039 22.8 6.7 65 86-153 9-81 (85)
89 PF14097 SpoVAE: Stage V sporu 74.7 32 0.0007 25.5 9.1 74 78-154 1-80 (180)
90 PF00289 CPSase_L_chain: Carba 74.6 17 0.00037 24.7 6.2 76 77-156 3-100 (110)
91 PRK10638 glutaredoxin 3; Provi 74.0 13 0.00028 23.4 5.2 64 79-145 4-68 (83)
92 TIGR02690 resist_ArsH arsenica 73.8 33 0.00071 26.4 8.2 60 90-151 45-113 (219)
93 TIGR00072 hydrog_prot hydrogen 73.8 19 0.0004 25.5 6.5 55 80-138 1-62 (145)
94 COG0655 WrbA Multimeric flavod 73.8 30 0.00064 25.9 8.0 69 84-153 13-100 (207)
95 cd06070 H2MP_like-2 Putative [ 73.4 15 0.00032 25.9 5.9 53 80-138 1-57 (140)
96 COG0426 FpaA Uncharacterized f 73.3 11 0.00023 31.7 5.7 53 78-133 248-303 (388)
97 COG2089 SpsE Sialic acid synth 73.2 21 0.00046 29.3 7.2 64 76-139 146-216 (347)
98 cd03032 ArsC_Spx Arsenate Redu 72.8 13 0.00029 25.1 5.4 42 86-128 8-49 (115)
99 PRK09622 porA pyruvate flavodo 72.7 4.3 9.3E-05 34.1 3.4 35 1-35 140-181 (407)
100 TIGR02190 GlrX-dom Glutaredoxi 72.4 21 0.00045 22.3 7.0 71 76-151 7-78 (79)
101 KOG2862|consensus 72.3 36 0.00077 28.1 8.3 69 76-147 92-161 (385)
102 PRK12559 transcriptional regul 71.2 18 0.00038 25.4 5.8 41 86-127 8-48 (131)
103 cd06068 H2MP_like-1 Putative [ 71.0 20 0.00043 25.4 6.1 55 81-138 2-62 (144)
104 PF03102 NeuB: NeuB family; I 70.7 41 0.00089 26.2 8.2 73 76-150 112-191 (241)
105 cd03036 ArsC_like Arsenate Red 70.4 13 0.00028 25.1 4.8 41 86-127 7-47 (111)
106 cd02977 ArsC_family Arsenate R 70.4 16 0.00035 24.1 5.3 42 86-128 7-48 (105)
107 cd03418 GRX_GRXb_1_3_like Glut 69.9 17 0.00038 21.9 5.0 60 86-147 8-69 (75)
108 TIGR01617 arsC_related transcr 68.9 12 0.00027 25.4 4.5 44 85-129 6-49 (117)
109 TIGR02181 GRX_bact Glutaredoxi 68.9 14 0.00031 22.8 4.5 60 86-147 7-67 (79)
110 cd00859 HisRS_anticodon HisRS 68.8 24 0.00053 21.7 6.3 55 78-135 3-59 (91)
111 PF00258 Flavodoxin_1: Flavodo 67.7 17 0.00037 25.1 5.2 48 84-136 7-54 (143)
112 PLN02409 serine--glyoxylate am 67.1 52 0.0011 27.2 8.7 77 76-155 84-169 (401)
113 PF03853 YjeF_N: YjeF-related 67.0 31 0.00068 25.0 6.6 41 79-119 29-69 (169)
114 PRK14012 cysteine desulfurase; 66.9 62 0.0013 26.6 9.1 79 77-156 94-175 (404)
115 PRK13403 ketol-acid reductoiso 65.9 36 0.00078 28.0 7.2 56 75-134 15-78 (335)
116 cd00861 ProRS_anticodon_short 65.4 32 0.00069 21.8 7.0 58 78-138 3-65 (94)
117 TIGR02006 IscS cysteine desulf 64.9 58 0.0012 26.8 8.5 78 78-156 93-173 (402)
118 PRK11544 hycI hydrogenase 3 ma 64.7 42 0.00091 24.1 6.8 56 78-137 2-64 (156)
119 cd00738 HGTP_anticodon HGTP an 64.6 33 0.0007 21.5 6.5 58 78-138 3-65 (94)
120 PF07905 PucR: Purine cataboli 63.8 44 0.00096 22.8 7.3 72 78-150 43-121 (123)
121 PRK01655 spxA transcriptional 63.0 23 0.0005 24.7 5.0 43 85-128 7-49 (131)
122 PRK10824 glutaredoxin-4; Provi 63.0 33 0.00073 23.6 5.7 37 76-112 14-54 (115)
123 PRK08366 vorA 2-ketoisovalerat 62.9 11 0.00023 31.7 3.8 36 1-36 133-173 (390)
124 TIGR02853 spore_dpaA dipicolin 62.3 35 0.00076 27.2 6.5 56 75-133 150-215 (287)
125 PF04430 DUF498: Protein of un 62.1 6.5 0.00014 26.6 2.0 36 76-111 53-89 (110)
126 PRK00676 hemA glutamyl-tRNA re 61.5 29 0.00064 28.5 6.0 55 76-133 174-232 (338)
127 PRK08105 flavodoxin; Provision 61.3 44 0.00095 23.8 6.4 57 80-143 4-64 (149)
128 PLN02651 cysteine desulfurase 61.1 80 0.0017 25.5 8.6 62 95-156 105-169 (364)
129 TIGR03569 NeuB_NnaB N-acetylne 61.1 81 0.0018 25.8 8.5 72 77-150 133-213 (329)
130 PF07991 IlvN: Acetohydroxy ac 60.9 14 0.0003 27.2 3.7 30 76-108 4-33 (165)
131 TIGR00130 frhD coenzyme F420-r 60.2 29 0.00064 24.8 5.3 60 77-137 3-70 (153)
132 COG4747 ACT domain-containing 59.6 59 0.0013 22.8 8.1 66 90-157 16-96 (142)
133 cd03029 GRX_hybridPRX5 Glutare 59.6 37 0.00079 20.5 7.0 68 79-151 3-71 (72)
134 COG1104 NifS Cysteine sulfinat 59.1 62 0.0013 27.2 7.6 77 80-156 93-172 (386)
135 PRK05967 cystathionine beta-ly 59.1 82 0.0018 26.4 8.4 54 98-156 124-180 (395)
136 TIGR00142 hycI hydrogenase mat 58.1 36 0.00078 24.1 5.4 54 80-137 2-63 (146)
137 PRK06756 flavodoxin; Provision 57.9 62 0.0013 22.6 8.2 28 84-111 12-39 (148)
138 cd01475 vWA_Matrilin VWA_Matri 57.5 32 0.0007 26.0 5.4 57 79-138 112-170 (224)
139 PRK05939 hypothetical protein; 57.4 75 0.0016 26.4 8.0 54 98-156 106-162 (397)
140 TIGR00387 glcD glycolate oxida 57.3 15 0.00033 30.7 3.8 28 1-28 1-28 (413)
141 COG2241 CobL Precorrin-6B meth 57.2 86 0.0019 24.0 9.4 44 111-157 123-166 (210)
142 PRK06703 flavodoxin; Provision 57.1 57 0.0012 22.9 6.3 33 80-112 4-40 (151)
143 TIGR03235 DNA_S_dndA cysteine 57.1 99 0.0021 24.7 8.5 62 95-156 105-169 (353)
144 PRK11183 D-lactate dehydrogena 56.6 63 0.0014 28.5 7.4 27 1-27 42-68 (564)
145 TIGR03402 FeS_nifS cysteine de 56.4 1E+02 0.0022 24.9 8.5 79 77-156 86-167 (379)
146 COG0543 UbiB 2-polyprenylpheno 56.3 93 0.002 24.1 8.3 62 76-138 107-172 (252)
147 COG1440 CelA Phosphotransferas 55.8 40 0.00086 22.8 4.9 47 76-124 48-95 (102)
148 cd01474 vWA_ATR ATR (Anthrax T 55.0 24 0.00052 25.7 4.2 54 79-135 107-164 (185)
149 COG0695 GrxC Glutaredoxin and 54.5 51 0.0011 20.8 5.2 54 86-139 9-64 (80)
150 PRK11865 pyruvate ferredoxin o 54.2 17 0.00037 29.4 3.4 26 2-27 182-207 (299)
151 PRK06718 precorrin-2 dehydroge 54.1 78 0.0017 23.7 6.9 33 75-110 9-41 (202)
152 PRK10569 NAD(P)H-dependent FMN 54.0 89 0.0019 23.2 7.2 61 90-151 19-89 (191)
153 PRK08306 dipicolinate synthase 54.0 51 0.0011 26.3 6.2 56 75-133 151-216 (296)
154 TIGR03249 KdgD 5-dehydro-4-deo 54.0 50 0.0011 26.2 6.2 75 76-153 73-153 (296)
155 cd01472 vWA_collagen von Wille 54.0 52 0.0011 23.2 5.8 55 78-135 106-162 (164)
156 cd01482 vWA_collagen_alphaI-XI 53.2 61 0.0013 22.9 6.0 55 78-135 106-162 (164)
157 PRK11864 2-ketoisovalerate fer 53.0 18 0.00039 29.2 3.4 26 2-27 178-203 (300)
158 PRK06702 O-acetylhomoserine am 52.5 1.1E+02 0.0025 25.9 8.3 55 98-156 121-178 (432)
159 cd05125 Mth938_2P1-like Mth938 52.2 14 0.00031 25.3 2.4 35 76-110 54-89 (114)
160 PTZ00062 glutaredoxin; Provisi 52.1 65 0.0014 24.4 6.2 64 76-145 112-184 (204)
161 PRK07308 flavodoxin; Validated 51.8 79 0.0017 22.0 7.2 32 82-113 6-41 (146)
162 cd03416 CbiX_SirB_N Sirohydroc 51.8 64 0.0014 20.9 6.7 73 79-151 2-82 (101)
163 COG0278 Glutaredoxin-related p 51.5 16 0.00035 24.7 2.5 76 76-155 14-95 (105)
164 PRK15469 ghrA bifunctional gly 51.4 70 0.0015 25.8 6.7 57 74-134 134-197 (312)
165 PF02254 TrkA_N: TrkA-N domain 51.4 29 0.00064 22.9 3.9 30 79-111 1-30 (116)
166 PRK12436 UDP-N-acetylenolpyruv 51.1 19 0.00041 29.0 3.3 27 1-27 40-66 (305)
167 cd03415 CbiX_CbiC Archaeal sir 50.7 83 0.0018 21.9 6.5 56 79-134 3-64 (125)
168 cd00248 Mth938-like Mth938-lik 50.3 13 0.00028 25.2 2.0 35 77-111 53-88 (109)
169 COG0452 Dfp Phosphopantothenoy 50.1 35 0.00076 28.6 4.8 45 76-120 4-53 (392)
170 cd06067 H2MP_MemB-H2evol Endop 49.9 86 0.0019 21.8 6.4 53 81-137 2-61 (136)
171 cd01452 VWA_26S_proteasome_sub 49.8 1.1E+02 0.0023 22.9 7.0 59 79-138 111-176 (187)
172 COG0503 Apt Adenine/guanine ph 49.7 27 0.00058 25.8 3.7 35 122-156 110-144 (179)
173 PF03033 Glyco_transf_28: Glyc 49.7 40 0.00087 22.8 4.5 33 79-111 1-35 (139)
174 PF01488 Shikimate_DH: Shikima 49.7 37 0.0008 23.6 4.3 31 76-109 12-43 (135)
175 PRK11230 glycolate oxidase sub 49.4 1E+02 0.0022 26.7 7.6 28 1-28 59-86 (499)
176 cd05560 Xcc1710_like Xcc1710_l 49.4 18 0.0004 24.5 2.6 36 76-111 52-88 (109)
177 TIGR00179 murB UDP-N-acetyleno 49.0 22 0.00047 28.4 3.3 27 1-27 16-42 (284)
178 PF02441 Flavoprotein: Flavopr 48.7 26 0.00056 24.1 3.3 31 78-108 2-33 (129)
179 cd05212 NAD_bind_m-THF_DH_Cycl 48.6 79 0.0017 22.4 5.8 35 76-112 28-62 (140)
180 TIGR03567 FMN_reduc_SsuE FMN r 48.5 1E+02 0.0022 22.2 7.2 63 88-151 16-88 (171)
181 PRK09004 FMN-binding protein M 48.5 95 0.0021 21.9 6.8 55 80-143 4-62 (146)
182 PF02826 2-Hacid_dh_C: D-isome 48.4 24 0.00052 25.8 3.3 57 75-134 35-98 (178)
183 PRK08133 O-succinylhomoserine 48.1 1.5E+02 0.0032 24.5 8.3 39 117-155 135-176 (390)
184 PRK08762 molybdopterin biosynt 47.9 1.2E+02 0.0027 24.9 7.8 25 128-156 135-159 (376)
185 PF00975 Thioesterase: Thioest 47.5 52 0.0011 24.2 5.1 30 77-106 66-95 (229)
186 PRK08114 cystathionine beta-ly 47.2 71 0.0015 26.8 6.2 55 96-155 120-177 (395)
187 PRK13905 murB UDP-N-acetylenol 47.1 25 0.00053 28.1 3.4 28 1-28 34-61 (298)
188 COG0062 Uncharacterized conser 46.9 72 0.0016 24.3 5.7 46 79-124 53-98 (203)
189 TIGR02326 transamin_PhnW 2-ami 46.8 1.5E+02 0.0033 23.7 9.3 48 76-126 78-125 (363)
190 PF12500 TRSP: TRSP domain C t 46.6 49 0.0011 24.1 4.6 32 76-107 57-88 (155)
191 TIGR01755 flav_wrbA NAD(P)H:qu 46.4 1.2E+02 0.0026 22.5 8.1 68 84-154 11-94 (197)
192 PRK11869 2-oxoacid ferredoxin 46.3 27 0.00059 27.9 3.5 24 4-27 166-189 (280)
193 PRK05479 ketol-acid reductoiso 46.2 82 0.0018 25.8 6.3 31 76-109 17-47 (330)
194 PRK14175 bifunctional 5,10-met 46.0 87 0.0019 25.1 6.3 50 74-131 156-205 (286)
195 PRK14652 UDP-N-acetylenolpyruv 45.9 26 0.00056 28.2 3.3 27 1-27 39-65 (302)
196 PRK07504 O-succinylhomoserine 45.8 1.7E+02 0.0036 24.3 8.3 41 115-155 137-180 (398)
197 COG0026 PurK Phosphoribosylami 45.7 86 0.0019 26.2 6.3 55 78-136 3-70 (375)
198 cd06064 H2MP_F420-Reduc Endope 45.6 43 0.00093 23.8 4.2 57 81-137 2-65 (150)
199 PLN02948 phosphoribosylaminoim 45.4 1.8E+02 0.0039 25.7 8.7 59 76-138 22-93 (577)
200 cd01480 vWA_collagen_alpha_1-V 45.1 72 0.0016 23.2 5.4 56 77-135 111-170 (186)
201 PRK02948 cysteine desulfurase; 45.0 1.6E+02 0.0036 23.7 8.9 60 96-155 106-168 (381)
202 PLN02757 sirohydrochlorine fer 44.8 99 0.0021 22.3 6.0 68 76-144 13-88 (154)
203 PF13241 NAD_binding_7: Putati 44.6 43 0.00094 22.1 3.8 35 75-112 6-40 (103)
204 CHL00201 syh histidine-tRNA sy 44.2 99 0.0021 26.1 6.7 59 77-138 326-386 (430)
205 PRK13906 murB UDP-N-acetylenol 44.2 29 0.00062 28.0 3.4 27 1-27 40-66 (307)
206 PRK11866 2-oxoacid ferredoxin 43.7 31 0.00068 27.5 3.4 25 3-27 164-188 (279)
207 COG0111 SerA Phosphoglycerate 43.5 70 0.0015 26.0 5.5 57 73-132 139-202 (324)
208 PRK14194 bifunctional 5,10-met 43.5 82 0.0018 25.5 5.8 37 74-112 157-193 (301)
209 PRK03995 hypothetical protein; 43.4 1.5E+02 0.0033 23.5 7.2 80 77-157 180-263 (267)
210 PF00701 DHDPS: Dihydrodipicol 43.3 1.5E+02 0.0032 23.3 7.3 78 76-153 69-153 (289)
211 TIGR01744 XPRTase xanthine pho 43.1 1.4E+02 0.003 22.3 7.8 34 123-156 112-145 (191)
212 PRK05613 O-acetylhomoserine am 43.1 2.1E+02 0.0045 24.3 9.0 56 97-156 128-186 (437)
213 TIGR01325 O_suc_HS_sulf O-succ 43.0 1.9E+02 0.0041 23.8 8.4 39 117-155 128-169 (380)
214 cd01476 VWA_integrin_invertebr 43.0 46 0.00099 23.3 4.0 54 78-132 106-161 (163)
215 PRK06932 glycerate dehydrogena 42.9 76 0.0016 25.6 5.6 57 73-132 144-202 (314)
216 PRK06487 glycerate dehydrogena 42.6 86 0.0019 25.3 5.9 56 74-133 146-203 (317)
217 COG1665 Predicted nucleotidylt 42.5 83 0.0018 25.3 5.5 45 70-123 132-176 (315)
218 PLN02928 oxidoreductase family 42.3 65 0.0014 26.4 5.2 35 74-111 157-191 (347)
219 TIGR01142 purT phosphoribosylg 42.0 1.9E+02 0.0041 23.5 8.1 54 78-135 1-69 (380)
220 TIGR01470 cysG_Nterm siroheme 42.0 1.3E+02 0.0029 22.5 6.6 34 75-111 8-41 (205)
221 PRK10874 cysteine sulfinate de 41.9 1.9E+02 0.0041 23.5 9.4 58 99-156 131-191 (401)
222 PRK05802 hypothetical protein; 41.5 1.8E+02 0.0038 23.5 7.6 37 76-112 172-209 (320)
223 PRK14619 NAD(P)H-dependent gly 41.5 96 0.0021 24.6 6.0 33 76-111 4-36 (308)
224 cd06066 H2MP_NAD-link-bidir En 41.5 90 0.0019 21.8 5.3 54 81-138 2-60 (139)
225 COG0277 GlcD FAD/FMN-containin 41.4 32 0.00069 28.7 3.4 28 1-28 35-62 (459)
226 PRK08134 O-acetylhomoserine am 41.4 2.2E+02 0.0047 24.1 9.0 54 98-156 124-180 (433)
227 PRK10537 voltage-gated potassi 41.0 1.1E+02 0.0025 25.5 6.5 32 76-110 240-271 (393)
228 PRK09590 celB cellobiose phosp 41.0 1E+02 0.0023 20.6 5.3 49 76-126 50-101 (104)
229 PRK12831 putative oxidoreducta 40.8 1.2E+02 0.0027 25.7 6.8 41 75-118 280-320 (464)
230 PRK13243 glyoxylate reductase; 40.8 78 0.0017 25.7 5.4 57 73-133 147-210 (333)
231 PLN02735 carbamoyl-phosphate s 40.7 1.2E+02 0.0026 29.1 7.2 53 77-129 24-98 (1102)
232 PF13439 Glyco_transf_4: Glyco 40.6 44 0.00096 22.9 3.6 36 84-119 11-46 (177)
233 COG4635 HemG Flavodoxin [Energ 40.6 97 0.0021 22.9 5.3 61 85-153 12-72 (175)
234 PF03446 NAD_binding_2: NAD bi 40.4 57 0.0012 23.3 4.2 31 78-111 3-33 (163)
235 cd03041 GST_N_2GST_N GST_N fam 40.4 82 0.0018 19.2 4.5 62 89-154 11-76 (77)
236 PRK08367 porA pyruvate ferredo 40.3 44 0.00095 28.0 4.0 36 1-36 134-176 (394)
237 PF00670 AdoHcyase_NAD: S-aden 40.2 61 0.0013 23.8 4.3 37 76-115 23-59 (162)
238 TIGR03403 nifS_epsilon cystein 40.1 2E+02 0.0043 23.3 8.8 60 97-156 109-171 (382)
239 PRK11790 D-3-phosphoglycerate 40.0 79 0.0017 26.6 5.5 59 72-134 147-209 (409)
240 PRK04148 hypothetical protein; 40.0 70 0.0015 22.7 4.4 33 76-112 17-49 (134)
241 PRK07810 O-succinylhomoserine 39.9 2.2E+02 0.0048 23.7 8.6 51 100-155 132-185 (403)
242 PRK06436 glycerate dehydrogena 39.8 1E+02 0.0022 24.8 5.8 56 74-133 120-179 (303)
243 cd00951 KDGDH 5-dehydro-4-deox 39.7 1E+02 0.0022 24.4 5.8 75 76-153 68-148 (289)
244 PRK07671 cystathionine beta-ly 39.7 2.1E+02 0.0046 23.5 8.1 39 117-155 123-164 (377)
245 cd03031 GRX_GRX_like Glutaredo 39.7 1.4E+02 0.003 21.4 6.5 57 87-145 15-76 (147)
246 PF02662 FlpD: Methyl-viologen 39.7 1.3E+02 0.0027 20.8 6.9 59 79-137 2-62 (124)
247 PRK08535 translation initiatio 39.4 1.7E+02 0.0036 23.6 7.1 29 125-153 186-219 (310)
248 cd03376 TPP_PFOR_porB_like Thi 39.2 41 0.0009 25.9 3.5 24 3-26 172-195 (235)
249 TIGR00442 hisS histidyl-tRNA s 39.2 1.3E+02 0.0028 24.8 6.6 57 77-136 323-381 (397)
250 PRK08305 spoVFB dipicolinate s 39.0 83 0.0018 23.8 4.9 33 76-108 5-39 (196)
251 PRK06719 precorrin-2 dehydroge 38.8 57 0.0012 23.4 4.0 34 75-111 12-45 (157)
252 TIGR01161 purK phosphoribosyla 38.8 2E+02 0.0042 23.2 7.5 54 79-136 2-68 (352)
253 TIGR03566 FMN_reduc_MsuE FMN r 38.8 1.5E+02 0.0032 21.4 7.0 62 90-152 18-92 (174)
254 PRK13903 murB UDP-N-acetylenol 38.7 38 0.00082 28.1 3.3 27 1-27 36-62 (363)
255 PRK13479 2-aminoethylphosphona 38.5 2.1E+02 0.0045 23.0 9.0 24 102-125 103-126 (368)
256 PRK07313 phosphopantothenoylcy 38.5 86 0.0019 23.2 4.9 32 77-108 2-34 (182)
257 PRK03620 5-dehydro-4-deoxygluc 38.3 1.1E+02 0.0023 24.5 5.8 75 76-152 75-154 (303)
258 PRK00170 azoreductase; Reviewe 38.2 1.6E+02 0.0034 21.5 7.4 62 89-151 20-109 (201)
259 PRK09628 oorB 2-oxoglutarate-a 38.1 43 0.00093 26.7 3.4 25 3-27 173-197 (277)
260 cd01450 vWFA_subfamily_ECM Von 38.0 70 0.0015 21.9 4.3 49 77-128 105-155 (161)
261 PRK09739 hypothetical protein; 37.9 1.6E+02 0.0036 21.6 6.9 62 89-151 21-102 (199)
262 PRK14649 UDP-N-acetylenolpyruv 37.6 43 0.00093 26.9 3.4 26 2-27 25-50 (295)
263 PF00266 Aminotran_5: Aminotra 37.5 2.2E+02 0.0047 22.9 9.5 79 76-156 88-170 (371)
264 PRK07812 O-acetylhomoserine am 37.5 2E+02 0.0043 24.4 7.5 42 115-156 142-186 (436)
265 TIGR00518 alaDH alanine dehydr 37.5 1.6E+02 0.0035 24.3 6.9 33 76-111 167-199 (370)
266 PLN02805 D-lactate dehydrogena 37.5 39 0.00084 29.7 3.3 28 1-28 137-164 (555)
267 cd02018 TPP_PFOR Thiamine pyro 37.4 46 0.001 25.7 3.5 25 3-27 174-199 (237)
268 PLN03139 formate dehydrogenase 37.3 1.2E+02 0.0027 25.3 6.2 58 73-133 196-261 (386)
269 KOG2018|consensus 37.2 37 0.0008 28.0 2.9 72 80-156 13-98 (430)
270 COG1504 Uncharacterized conser 37.2 49 0.0011 22.8 3.1 52 76-134 61-116 (121)
271 TIGR00106 uncharacterized prot 37.1 81 0.0017 20.9 4.2 36 78-113 4-43 (97)
272 PRK06019 phosphoribosylaminoim 37.1 1.4E+02 0.0031 24.4 6.5 57 77-137 3-72 (372)
273 TIGR03586 PseI pseudaminic aci 36.9 2.3E+02 0.0051 23.1 8.6 72 77-150 134-212 (327)
274 PF07881 Fucose_iso_N1: L-fuco 36.8 87 0.0019 23.2 4.5 68 88-156 62-130 (171)
275 COG0059 IlvC Ketol-acid reduct 36.8 50 0.0011 27.0 3.6 29 76-107 18-46 (338)
276 PRK05920 aromatic acid decarbo 36.7 94 0.002 23.6 5.0 33 76-108 3-36 (204)
277 PRK11104 hemG protoporphyrinog 36.7 1.4E+02 0.003 21.8 5.8 60 85-153 12-71 (177)
278 PF00899 ThiF: ThiF family; I 36.5 65 0.0014 22.1 3.9 37 76-115 2-39 (135)
279 cd01521 RHOD_PspE2 Member of t 36.4 68 0.0015 21.1 3.8 32 76-107 64-95 (110)
280 PF00070 Pyr_redox: Pyridine n 36.4 75 0.0016 19.5 3.8 31 79-112 2-32 (80)
281 PF01750 HycI: Hydrogenase mat 36.1 76 0.0017 21.7 4.1 42 93-138 2-46 (130)
282 PF05908 DUF867: Protein of un 36.1 55 0.0012 24.7 3.6 45 114-158 77-131 (194)
283 PRK08199 thiamine pyrophosphat 36.0 2.7E+02 0.0059 24.1 8.4 28 5-32 137-169 (557)
284 PRK07586 hypothetical protein; 36.0 2.8E+02 0.006 23.7 9.1 60 76-135 198-270 (514)
285 PRK08249 cystathionine gamma-s 35.9 2.5E+02 0.0053 23.4 7.8 41 115-155 136-179 (398)
286 cd01453 vWA_transcription_fact 35.8 1.4E+02 0.0031 21.8 5.8 56 77-136 108-167 (183)
287 PRK08064 cystathionine beta-ly 35.3 2.6E+02 0.0055 23.1 8.4 50 101-155 116-168 (390)
288 PRK10329 glutaredoxin-like pro 35.3 1.2E+02 0.0025 19.1 5.8 61 86-151 9-73 (81)
289 PRK05568 flavodoxin; Provision 35.3 1.4E+02 0.003 20.4 5.4 33 80-112 4-40 (142)
290 TIGR01316 gltA glutamate synth 35.2 2E+02 0.0043 24.2 7.2 34 76-112 272-305 (449)
291 PF08859 DGC: DGC domain; Int 35.2 1.4E+02 0.0031 20.1 5.4 49 88-138 13-61 (110)
292 PRK06176 cystathionine gamma-s 35.1 2.6E+02 0.0056 23.1 8.1 40 116-155 122-164 (380)
293 TIGR01752 flav_long flavodoxin 35.1 1.7E+02 0.0037 21.0 6.7 31 81-111 3-35 (167)
294 PF01494 FAD_binding_3: FAD bi 35.1 69 0.0015 25.0 4.2 32 78-112 3-34 (356)
295 PF13399 LytR_C: LytR cell env 34.7 60 0.0013 20.6 3.2 27 131-157 5-31 (90)
296 COG2820 Udp Uridine phosphoryl 34.4 1.1E+02 0.0024 24.1 5.0 40 76-116 57-96 (248)
297 TIGR02113 coaC_strep phosphopa 34.3 1E+02 0.0022 22.7 4.8 31 78-108 2-33 (177)
298 cd03414 CbiX_SirB_C Sirohydroc 34.2 1.4E+02 0.003 19.8 8.1 73 79-151 3-82 (117)
299 PRK14192 bifunctional 5,10-met 34.2 1.8E+02 0.0039 23.2 6.4 35 74-110 157-191 (283)
300 PRK08410 2-hydroxyacid dehydro 34.2 1.3E+02 0.0028 24.2 5.7 57 73-133 142-202 (311)
301 TIGR02356 adenyl_thiF thiazole 34.1 84 0.0018 23.5 4.4 37 76-115 21-58 (202)
302 COG4565 CitB Response regulato 33.8 51 0.0011 25.5 3.1 44 76-128 74-117 (224)
303 PRK00037 hisS histidyl-tRNA sy 33.8 1.9E+02 0.0041 23.9 6.8 58 76-136 318-377 (412)
304 TIGR01678 FAD_lactone_ox sugar 33.8 50 0.0011 28.0 3.4 27 1-27 18-44 (438)
305 TIGR01251 ribP_PPkin ribose-ph 33.8 1.4E+02 0.003 24.0 5.8 58 76-138 210-273 (308)
306 TIGR01753 flav_short flavodoxi 33.6 1.5E+02 0.0033 19.9 6.8 32 82-113 3-38 (140)
307 PRK08574 cystathionine gamma-s 33.4 2.5E+02 0.0054 23.2 7.4 39 117-155 125-167 (385)
308 TIGR02032 GG-red-SF geranylger 33.4 72 0.0016 24.3 4.0 32 78-112 2-33 (295)
309 PF02882 THF_DHG_CYH_C: Tetrah 33.2 1.3E+02 0.0028 21.9 5.0 49 76-132 36-84 (160)
310 PRK03359 putative electron tra 33.2 2.4E+02 0.0052 22.2 8.2 12 77-88 55-66 (256)
311 PRK13812 orotate phosphoribosy 33.0 2E+02 0.0043 21.1 6.2 64 89-156 71-135 (176)
312 COG0074 SucD Succinyl-CoA synt 32.7 1.6E+02 0.0034 23.9 5.7 49 86-139 52-101 (293)
313 cd01465 vWA_subgroup VWA subgr 32.6 1.7E+02 0.0037 20.3 7.3 58 77-136 98-162 (170)
314 PTZ00075 Adenosylhomocysteinas 32.4 1.3E+02 0.0028 26.1 5.6 58 74-134 252-316 (476)
315 PRK04930 glutathione-regulated 32.3 2.1E+02 0.0046 21.2 6.9 59 91-150 22-83 (184)
316 cd06219 DHOD_e_trans_like1 FAD 32.2 1.2E+02 0.0027 23.1 5.2 34 76-109 97-130 (248)
317 cd04962 GT1_like_5 This family 32.1 77 0.0017 25.0 4.1 25 85-109 12-36 (371)
318 PRK15438 erythronate-4-phospha 32.1 1.2E+02 0.0026 25.3 5.3 56 74-132 114-172 (378)
319 COG0124 HisS Histidyl-tRNA syn 32.0 2.7E+02 0.006 23.7 7.4 60 76-138 335-396 (429)
320 PRK06460 hypothetical protein; 31.8 2.9E+02 0.0063 22.7 8.8 26 130-155 132-160 (376)
321 TIGR01019 sucCoAalpha succinyl 31.8 2.1E+02 0.0045 22.9 6.4 17 140-156 152-168 (286)
322 PRK09267 flavodoxin FldA; Vali 31.7 1.9E+02 0.0041 20.5 6.3 20 80-99 4-23 (169)
323 TIGR01316 gltA glutamate synth 31.7 87 0.0019 26.4 4.5 32 76-110 133-164 (449)
324 PF01266 DAO: FAD dependent ox 31.7 73 0.0016 24.9 3.9 31 78-111 1-31 (358)
325 COG0329 DapA Dihydrodipicolina 31.7 1.7E+02 0.0038 23.4 6.0 74 80-153 76-156 (299)
326 TIGR02177 PorB_KorB 2-oxoacid: 31.7 62 0.0014 25.9 3.4 24 4-27 159-182 (287)
327 cd03798 GT1_wlbH_like This fam 31.5 2.3E+02 0.005 21.5 8.1 38 112-152 263-300 (377)
328 PRK11867 2-oxoglutarate ferred 31.4 64 0.0014 25.8 3.5 24 4-27 175-198 (286)
329 TIGR00511 ribulose_e2b2 ribose 31.3 2.3E+02 0.005 22.8 6.7 37 80-118 118-154 (301)
330 PRK06372 translation initiatio 31.3 2.6E+02 0.0057 22.0 7.3 66 79-152 111-181 (253)
331 TIGR01369 CPSaseII_lrg carbamo 31.2 2.3E+02 0.005 27.0 7.5 53 76-128 554-628 (1050)
332 PLN02463 lycopene beta cyclase 31.2 70 0.0015 27.2 3.8 35 76-113 28-62 (447)
333 PRK07116 flavodoxin; Provision 31.1 1.9E+02 0.0042 20.5 6.4 28 126-154 75-102 (160)
334 PF11823 DUF3343: Protein of u 31.1 1.3E+02 0.0028 18.4 4.5 27 81-108 5-31 (73)
335 PRK09028 cystathionine beta-ly 31.1 3.1E+02 0.0068 22.9 9.5 54 98-156 121-177 (394)
336 PRK12480 D-lactate dehydrogena 31.0 1.7E+02 0.0036 23.8 5.9 58 74-134 144-205 (330)
337 PRK05225 ketol-acid reductoiso 31.0 46 0.001 28.8 2.7 74 75-151 35-121 (487)
338 cd01473 vWA_CTRP CTRP for CS 30.7 2.1E+02 0.0047 21.0 6.0 45 79-126 112-160 (192)
339 TIGR01214 rmlD dTDP-4-dehydror 30.7 1.9E+02 0.004 22.1 6.0 37 92-128 13-49 (287)
340 PRK12815 carB carbamoyl phosph 30.6 2.9E+02 0.0063 26.4 8.0 52 77-128 8-81 (1068)
341 cd05126 Mth938 Mth938 domain. 30.5 46 0.001 22.9 2.2 32 76-107 58-91 (117)
342 PRK07574 formate dehydrogenase 30.3 1.4E+02 0.003 25.1 5.3 58 73-133 189-254 (385)
343 COG1013 PorB Pyruvate:ferredox 30.3 65 0.0014 25.9 3.3 25 3-27 176-200 (294)
344 PRK05294 carB carbamoyl phosph 30.2 81 0.0018 29.9 4.4 52 77-128 8-81 (1066)
345 PRK07200 aspartate/ornithine c 30.0 2.4E+02 0.0053 23.7 6.8 43 76-118 187-234 (395)
346 COG1179 Dinucleotide-utilizing 29.9 1.1E+02 0.0024 24.2 4.4 35 117-157 21-55 (263)
347 PRK02947 hypothetical protein; 29.9 95 0.0021 24.0 4.1 31 78-108 109-139 (246)
348 PRK06222 ferredoxin-NADP(+) re 29.8 1.1E+02 0.0024 23.9 4.6 33 76-108 98-130 (281)
349 PRK11921 metallo-beta-lactamas 29.5 3.3E+02 0.0071 22.5 7.8 70 78-151 248-323 (394)
350 PRK09754 phenylpropionate diox 29.5 1.6E+02 0.0034 24.2 5.6 32 76-110 144-175 (396)
351 PRK12779 putative bifunctional 29.4 2.4E+02 0.0053 26.6 7.3 48 75-125 446-495 (944)
352 cd00952 CHBPH_aldolase Trans-o 29.1 2.2E+02 0.0047 22.8 6.2 78 76-153 76-161 (309)
353 COG1908 FrhD Coenzyme F420-red 29.1 2.1E+02 0.0045 20.2 6.0 54 103-156 28-92 (132)
354 TIGR00140 hupD hydrogenase exp 29.0 1.9E+02 0.0042 19.7 5.3 41 94-138 3-46 (134)
355 PRK12770 putative glutamate sy 28.9 1E+02 0.0023 24.8 4.4 32 76-110 18-49 (352)
356 PRK08248 O-acetylhomoserine am 28.9 3.5E+02 0.0077 22.8 8.7 52 99-155 125-179 (431)
357 TIGR00521 coaBC_dfp phosphopan 28.9 1.3E+02 0.0029 25.1 5.0 33 76-108 3-36 (390)
358 PRK03170 dihydrodipicolinate s 28.9 2.2E+02 0.0049 22.3 6.2 75 79-153 72-153 (292)
359 cd05013 SIS_RpiR RpiR-like pro 28.8 1.4E+02 0.003 19.7 4.5 33 76-108 13-45 (139)
360 PRK15317 alkyl hydroperoxide r 28.6 2.8E+02 0.006 23.8 7.1 34 75-111 350-383 (517)
361 PRK00257 erythronate-4-phospha 28.6 1.4E+02 0.003 25.0 5.1 57 74-133 114-173 (381)
362 PF13738 Pyr_redox_3: Pyridine 28.5 1.2E+02 0.0026 21.8 4.3 32 75-109 166-197 (203)
363 PRK09219 xanthine phosphoribos 28.3 80 0.0017 23.6 3.3 33 124-156 113-145 (189)
364 COG2084 MmsB 3-hydroxyisobutyr 28.3 2.3E+02 0.005 22.7 6.1 35 78-115 2-36 (286)
365 TIGR03392 FeS_syn_CsdA cystein 28.3 3.3E+02 0.0071 22.1 9.5 56 100-155 129-187 (398)
366 PRK13984 putative oxidoreducta 28.2 1E+02 0.0022 27.0 4.5 32 76-110 283-314 (604)
367 PRK12770 putative glutamate sy 28.2 1.9E+02 0.0042 23.2 5.9 34 76-112 172-206 (352)
368 PF06418 CTP_synth_N: CTP synt 28.2 1.2E+02 0.0026 24.3 4.3 50 88-137 188-241 (276)
369 TIGR01292 TRX_reduct thioredox 28.1 1E+02 0.0022 23.6 4.1 29 78-109 2-30 (300)
370 PRK14191 bifunctional 5,10-met 28.0 2.9E+02 0.0064 22.2 6.7 51 74-132 155-205 (285)
371 KOG1017|consensus 27.9 2.9E+02 0.0062 21.4 8.3 53 80-138 197-253 (267)
372 cd04795 SIS SIS domain. SIS (S 27.9 1.1E+02 0.0025 18.6 3.6 72 79-156 1-75 (87)
373 cd05565 PTS_IIB_lactose PTS_II 27.8 1.9E+02 0.0041 19.2 4.9 47 76-124 47-96 (99)
374 PRK10953 cysJ sulfite reductas 27.8 1.6E+02 0.0035 26.2 5.6 58 79-143 63-124 (600)
375 COG3380 Predicted NAD/FAD-depe 27.8 1.1E+02 0.0024 24.9 4.1 29 78-109 3-31 (331)
376 PRK08861 cystathionine gamma-s 27.8 3.6E+02 0.0077 22.4 9.0 40 116-155 126-168 (388)
377 PRK07811 cystathionine gamma-s 27.8 3.5E+02 0.0075 22.3 7.8 20 117-136 135-154 (388)
378 TIGR01546 GAPDH-II_archae glyc 27.7 2.5E+02 0.0054 23.1 6.3 49 106-155 217-267 (333)
379 PRK00934 ribose-phosphate pyro 27.7 1.1E+02 0.0024 24.3 4.2 58 75-137 203-266 (285)
380 PRK12342 hypothetical protein; 27.6 3E+02 0.0066 21.6 7.8 13 76-88 51-63 (254)
381 PF09383 NIL: NIL domain; Int 27.6 1.5E+02 0.0033 18.1 4.1 29 80-108 48-76 (76)
382 PLN02530 histidine-tRNA ligase 27.6 2.3E+02 0.005 24.3 6.4 58 76-136 401-460 (487)
383 PRK12810 gltD glutamate syntha 27.5 1.1E+02 0.0025 25.9 4.5 32 76-110 143-174 (471)
384 PF00156 Pribosyltran: Phospho 27.5 69 0.0015 21.2 2.7 30 127-156 87-116 (125)
385 TIGR01328 met_gam_lyase methio 27.3 3.6E+02 0.0077 22.3 8.7 39 117-155 133-174 (391)
386 TIGR00683 nanA N-acetylneurami 27.2 2.4E+02 0.0053 22.3 6.2 75 79-153 72-154 (290)
387 cd05006 SIS_GmhA Phosphoheptos 27.2 1.3E+02 0.0028 21.7 4.2 53 76-136 101-154 (177)
388 PRK12444 threonyl-tRNA synthet 27.2 2.6E+02 0.0055 24.9 6.8 58 76-136 541-601 (639)
389 PRK06234 methionine gamma-lyas 27.2 3.6E+02 0.0078 22.3 8.8 37 117-153 138-177 (400)
390 PRK10669 putative cation:proto 27.2 1.1E+02 0.0023 26.7 4.4 33 76-111 417-449 (558)
391 COG1533 SplB DNA repair photol 27.0 3.3E+02 0.0073 21.9 7.0 63 90-152 170-236 (297)
392 PRK05569 flavodoxin; Provision 26.9 2.1E+02 0.0045 19.5 7.1 32 81-112 5-40 (141)
393 cd05014 SIS_Kpsf KpsF-like pro 26.9 1.5E+02 0.0032 19.7 4.3 39 78-116 50-88 (128)
394 PRK05476 S-adenosyl-L-homocyst 26.8 1.9E+02 0.0042 24.6 5.7 35 75-112 211-245 (425)
395 PLN02908 threonyl-tRNA synthet 26.7 2.6E+02 0.0057 25.2 6.8 60 76-138 589-650 (686)
396 cd01075 NAD_bind_Leu_Phe_Val_D 26.7 1.1E+02 0.0025 22.8 4.0 32 76-110 28-59 (200)
397 PRK06242 flavodoxin; Provision 26.6 1.2E+02 0.0027 20.9 4.0 28 129-156 75-103 (150)
398 PRK12769 putative oxidoreducta 26.6 1E+02 0.0022 27.5 4.2 32 76-110 327-358 (654)
399 PRK14694 putative mercuric red 26.6 1.6E+02 0.0035 24.8 5.3 35 76-113 178-212 (468)
400 PRK10565 putative carbohydrate 26.6 2.1E+02 0.0046 24.8 6.1 42 78-119 62-104 (508)
401 PLN02852 ferredoxin-NADP+ redu 26.6 2.7E+02 0.0059 24.1 6.7 59 76-137 166-247 (491)
402 TIGR01505 tartro_sem_red 2-hyd 26.5 2.3E+02 0.0051 22.1 5.9 12 144-155 100-111 (291)
403 KOG0029|consensus 26.5 1.1E+02 0.0024 26.5 4.3 34 76-112 15-48 (501)
404 PRK13982 bifunctional SbtC-lik 26.3 1.4E+02 0.0031 25.8 4.9 41 76-116 70-115 (475)
405 PLN03050 pyridoxine (pyridoxam 26.2 98 0.0021 24.1 3.6 32 78-109 62-94 (246)
406 cd05009 SIS_GlmS_GlmD_2 SIS (S 26.2 2.2E+02 0.0047 19.4 5.9 33 76-108 13-46 (153)
407 PRK11199 tyrA bifunctional cho 26.2 2.3E+02 0.0049 23.4 6.0 33 76-111 98-131 (374)
408 PRK08558 adenine phosphoribosy 26.2 1E+02 0.0023 23.8 3.8 33 124-156 172-204 (238)
409 PRK05778 2-oxoglutarate ferred 26.2 85 0.0018 25.3 3.3 25 3-27 175-199 (301)
410 PRK14188 bifunctional 5,10-met 26.1 2.5E+02 0.0054 22.6 6.0 36 74-112 156-192 (296)
411 cd05564 PTS_IIB_chitobiose_lic 26.1 1.9E+02 0.0042 18.8 5.2 48 76-125 46-94 (96)
412 cd04955 GT1_like_6 This family 26.0 1.5E+02 0.0032 23.1 4.8 26 85-110 15-40 (363)
413 PRK09213 pur operon repressor; 26.0 93 0.002 24.8 3.5 33 124-156 192-224 (271)
414 PRK14938 Ser-tRNA(Thr) hydrola 26.0 3.6E+02 0.0077 22.8 7.0 60 76-138 274-335 (387)
415 TIGR01976 am_tr_V_VC1184 cyste 25.9 3.6E+02 0.0077 21.8 9.5 58 99-156 126-187 (397)
416 cd00954 NAL N-Acetylneuraminic 25.8 3.2E+02 0.0068 21.5 6.6 78 76-153 69-154 (288)
417 PRK12779 putative bifunctional 25.7 1E+02 0.0022 29.0 4.2 33 75-110 305-337 (944)
418 KOG1549|consensus 25.7 2E+02 0.0044 24.6 5.5 59 78-136 131-189 (428)
419 PF04414 tRNA_deacylase: D-ami 25.7 3.1E+02 0.0067 21.0 6.4 77 79-156 131-209 (213)
420 PRK14650 UDP-N-acetylenolpyruv 25.7 81 0.0018 25.5 3.1 26 2-27 37-62 (302)
421 PRK12831 putative oxidoreducta 25.7 1.2E+02 0.0025 25.9 4.2 32 76-110 140-171 (464)
422 TIGR01421 gluta_reduc_1 glutat 25.7 2.4E+02 0.0052 23.7 6.2 41 76-119 166-208 (450)
423 TIGR00421 ubiX_pad polyprenyl 25.6 1.6E+02 0.0034 21.8 4.5 37 79-115 2-43 (181)
424 PRK15427 colanic acid biosynth 25.6 3.8E+02 0.0083 22.1 7.8 41 112-152 283-326 (406)
425 PRK12452 cardiolipin synthetas 25.6 3.9E+02 0.0086 23.2 7.5 19 126-144 241-260 (509)
426 PRK13809 orotate phosphoribosy 25.6 2.4E+02 0.0051 21.4 5.5 32 125-156 115-146 (206)
427 PF01262 AlaDh_PNT_C: Alanine 25.5 99 0.0021 22.2 3.4 33 76-111 20-52 (168)
428 PRK10897 phosphohistidinoprote 25.4 1.4E+02 0.003 19.4 3.8 27 76-102 60-86 (90)
429 cd01079 NAD_bind_m-THF_DH NAD 25.4 2.6E+02 0.0056 21.2 5.6 58 74-133 60-132 (197)
430 cd03371 TPP_PpyrDC Thiamine py 25.4 97 0.0021 22.9 3.3 24 4-27 136-159 (188)
431 cd03801 GT1_YqgM_like This fam 25.3 3E+02 0.0064 20.7 7.8 37 113-152 261-297 (374)
432 TIGR01984 UbiH 2-polyprenyl-6- 25.3 1E+02 0.0022 24.8 3.8 31 78-111 1-32 (382)
433 COG3547 Transposase and inacti 25.3 64 0.0014 25.2 2.5 35 80-115 37-71 (303)
434 TIGR02354 thiF_fam2 thiamine b 25.2 1.3E+02 0.0028 22.6 4.0 37 76-115 21-58 (200)
435 TIGR03127 RuMP_HxlB 6-phospho 25.1 1.5E+02 0.0034 21.2 4.4 40 77-116 73-113 (179)
436 PRK05579 bifunctional phosphop 25.1 1.7E+02 0.0037 24.6 5.1 33 76-108 6-39 (399)
437 PHA03050 glutaredoxin; Provisi 25.1 2.2E+02 0.0047 19.0 6.8 68 76-146 12-86 (108)
438 PRK12325 prolyl-tRNA synthetas 25.0 4.1E+02 0.0089 22.5 7.4 59 77-138 346-409 (439)
439 TIGR01677 pln_FAD_oxido plant- 25.0 86 0.0019 27.6 3.4 27 1-27 35-61 (557)
440 PRK14653 UDP-N-acetylenolpyruv 25.0 84 0.0018 25.3 3.1 26 1-27 37-62 (297)
441 TIGR01988 Ubi-OHases Ubiquinon 24.9 1.1E+02 0.0023 24.6 3.8 32 78-112 1-32 (385)
442 COG1799 Uncharacterized protei 24.9 1.4E+02 0.003 22.1 3.9 47 80-128 76-122 (167)
443 TIGR01931 cysJ sulfite reducta 24.9 1.6E+02 0.0035 26.1 5.1 58 78-142 59-120 (597)
444 TIGR00824 EIIA-man PTS system, 24.9 2.3E+02 0.0049 19.1 8.3 70 78-149 3-77 (116)
445 PRK03562 glutathione-regulated 24.9 1.4E+02 0.0029 26.7 4.6 33 76-111 400-432 (621)
446 PRK01438 murD UDP-N-acetylmura 24.9 1.3E+02 0.0028 25.5 4.4 33 76-111 16-48 (480)
447 cd03377 TPP_PFOR_PNO Thiamine 24.8 86 0.0019 26.1 3.2 23 5-27 241-263 (365)
448 PF01936 NYN: NYN domain; Int 24.8 1.2E+02 0.0026 20.6 3.6 50 78-135 97-146 (146)
449 PF01408 GFO_IDH_MocA: Oxidore 24.7 1.2E+02 0.0025 19.9 3.4 57 76-134 62-118 (120)
450 PF00462 Glutaredoxin: Glutare 24.6 1.5E+02 0.0032 16.9 3.9 28 86-113 7-34 (60)
451 cd01483 E1_enzyme_family Super 24.5 1.4E+02 0.0031 20.5 4.0 35 78-115 1-36 (143)
452 TIGR01822 2am3keto_CoA 2-amino 24.5 2.9E+02 0.0063 22.3 6.3 38 104-141 170-212 (393)
453 PRK07505 hypothetical protein; 24.5 2.5E+02 0.0055 23.0 6.0 25 117-141 197-221 (402)
454 PRK09271 flavodoxin; Provision 24.4 2.6E+02 0.0057 19.8 5.8 31 80-110 3-37 (160)
455 TIGR01465 cobM_cbiF precorrin- 24.3 1.2E+02 0.0026 22.8 3.8 77 76-156 71-179 (229)
456 PF03720 UDPG_MGDP_dh_C: UDP-g 24.3 64 0.0014 21.4 2.0 62 89-151 17-91 (106)
457 PF11965 DUF3479: Domain of un 24.3 2.9E+02 0.0063 20.3 5.6 10 127-136 85-94 (164)
458 TIGR00418 thrS threonyl-tRNA s 24.3 3.2E+02 0.007 23.7 6.8 58 76-136 470-529 (563)
459 PRK10262 thioredoxin reductase 24.2 2.8E+02 0.0061 21.8 6.0 34 76-112 146-179 (321)
460 PRK00923 sirohydrochlorin coba 24.2 2.3E+02 0.005 19.1 6.5 65 78-142 3-74 (126)
461 PRK07199 phosphoribosylpyropho 24.2 3.8E+02 0.0082 21.5 7.8 63 76-138 49-128 (301)
462 PRK10310 PTS system galactitol 24.2 1.8E+02 0.0038 18.9 4.1 16 94-109 23-38 (94)
463 PLN02417 dihydrodipicolinate s 24.2 2.9E+02 0.0063 21.7 6.0 74 79-153 72-151 (280)
464 PRK04147 N-acetylneuraminate l 24.1 3E+02 0.0065 21.7 6.1 78 76-153 72-156 (293)
465 COG1635 THI4 Ribulose 1,5-bisp 24.1 1.2E+02 0.0026 23.9 3.6 33 76-111 30-62 (262)
466 PF01918 Alba: Alba; InterPro 24.1 1.7E+02 0.0036 17.6 3.8 27 76-102 30-56 (70)
467 PF01053 Cys_Met_Meta_PP: Cys/ 24.1 2.3E+02 0.005 23.6 5.6 70 81-155 97-170 (386)
468 PF07071 DUF1341: Protein of u 24.0 3.4E+02 0.0073 20.9 6.2 75 77-156 116-203 (218)
469 TIGR01329 cysta_beta_ly_E cyst 24.0 4.1E+02 0.0088 21.8 7.7 50 101-155 109-161 (378)
470 PLN02837 threonine-tRNA ligase 23.9 3.6E+02 0.0079 24.0 7.1 58 76-137 516-575 (614)
471 TIGR00762 DegV EDD domain prot 23.9 3.2E+02 0.007 21.3 6.2 16 130-145 108-123 (275)
472 TIGR01743 purR_Bsub pur operon 23.9 1E+02 0.0022 24.5 3.3 33 124-156 190-222 (268)
473 cd06603 GH31_GANC_GANAB_alpha 23.8 3.7E+02 0.0081 21.7 6.8 51 88-138 23-87 (339)
474 PRK00046 murB UDP-N-acetylenol 23.8 88 0.0019 25.7 3.0 26 2-27 25-50 (334)
475 PRK13018 cell division protein 23.8 4.4E+02 0.0095 22.1 7.5 61 76-139 112-186 (378)
476 PRK12305 thrS threonyl-tRNA sy 23.8 3.7E+02 0.0079 23.5 7.1 58 77-137 477-536 (575)
477 PRK03092 ribose-phosphate pyro 23.8 3.9E+02 0.0084 21.5 8.2 63 76-138 36-117 (304)
478 cd05017 SIS_PGI_PMI_1 The memb 23.7 2.3E+02 0.005 18.8 7.1 67 79-152 47-115 (119)
479 PRK06163 hypothetical protein; 23.7 1.1E+02 0.0023 23.1 3.3 24 4-27 146-169 (202)
480 TIGR01421 gluta_reduc_1 glutat 23.7 1.3E+02 0.0028 25.3 4.2 32 76-110 2-33 (450)
481 PF12328 Rpp20: Rpp20 subunit 23.6 2.1E+02 0.0047 20.4 4.7 32 76-107 61-93 (144)
482 PF13478 XdhC_C: XdhC Rossmann 23.5 86 0.0019 22.0 2.6 31 79-112 1-31 (136)
483 TIGR03301 PhnW-AepZ 2-aminoeth 23.4 3.7E+02 0.008 21.1 9.3 26 116-141 142-167 (355)
484 PRK12814 putative NADPH-depend 23.3 3.9E+02 0.0084 23.9 7.2 48 76-126 323-373 (652)
485 COG1184 GCD2 Translation initi 23.3 3.5E+02 0.0075 22.0 6.3 47 79-133 147-193 (301)
486 PRK14478 nitrogenase molybdenu 23.3 2.7E+02 0.0059 23.9 6.0 56 76-136 324-379 (475)
487 COG3046 Uncharacterized protei 23.2 3.8E+02 0.0082 23.1 6.6 58 95-156 59-118 (505)
488 PF11784 DUF3320: Protein of u 23.2 66 0.0014 18.7 1.7 25 2-26 5-29 (52)
489 PRK09246 amidophosphoribosyltr 23.2 55 0.0012 28.4 1.8 52 76-127 358-417 (501)
490 PRK06567 putative bifunctional 23.2 1.4E+02 0.003 28.5 4.5 33 76-111 383-415 (1028)
491 PF01946 Thi4: Thi4 family; PD 23.2 1.3E+02 0.0028 23.4 3.7 32 76-110 17-48 (230)
492 TIGR02053 MerA mercuric reduct 23.2 2.3E+02 0.005 23.8 5.6 33 76-111 166-198 (463)
493 PRK11749 dihydropyrimidine deh 23.1 4.5E+02 0.0098 22.0 7.3 38 76-116 273-311 (457)
494 PLN02465 L-galactono-1,4-lacto 23.1 3.8E+02 0.0083 23.8 7.0 27 1-27 100-126 (573)
495 PRK12409 D-amino acid dehydrog 23.1 1.3E+02 0.0028 24.6 4.0 32 77-112 2-34 (410)
496 COG3933 Transcriptional antite 23.1 2.9E+02 0.0063 23.9 6.0 74 76-151 108-188 (470)
497 cd00408 DHDPS-like Dihydrodipi 23.1 3.5E+02 0.0076 20.9 6.3 77 77-153 66-149 (281)
498 TIGR01369 CPSaseII_lrg carbamo 23.1 2.2E+02 0.0048 27.1 5.8 52 77-128 7-80 (1050)
499 PF00731 AIRC: AIR carboxylase 23.1 3E+02 0.0064 19.9 7.0 69 78-149 2-75 (150)
500 PF11821 DUF3341: Protein of u 23.0 1.2E+02 0.0027 22.4 3.5 37 87-127 11-47 (173)
No 1
>COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]
Probab=99.97 E-value=3.4e-31 Score=206.04 Aligned_cols=135 Identities=28% Similarity=0.432 Sum_probs=123.1
Q ss_pred CcccCCHHHHHHHHHHHHhCCCcEEEEecccccccccCCCCcccCCCcccccCceEEEeeccccccCCCcccccCCCcEE
Q psy7291 1 VVSPYNSEDAKGLLKAAIRDPDPVVFLENELLYGVQYPMGDEALSKDFVLPIGKAKVEKQGEAFYHLDAPVIRVTGKDIT 80 (158)
Q Consensus 1 V~~P~d~~e~~~~l~~a~~~~~P~~iR~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vl~~~~~~~~~~~~~~~~~g~~~~ 80 (158)
|++|+|+.+.+++++++.++++|+|+|+.+. ++|+. .....+.|++||+.+|++ |+|++
T Consensus 138 V~~P~D~v~~~~i~~~~~~~~GP~Y~Rl~R~----~~p~~--~~~~~~~F~iGka~vLrd---------------G~D~t 196 (312)
T COG3958 138 VIAPADAVETRAILDQIADYKGPVYMRLGRG----KVPVV--VDEGGYTFEIGKANVLRD---------------GSDLT 196 (312)
T ss_pred EEccCcHHHHHHHHHHHHhcCCCEEEEecCC----CCCce--ecCCCceEeccceeEeec---------------CCceE
Confidence 6899999999999999999999999997543 23321 122357899999999999 99999
Q ss_pred EEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhCCCeEEEEeCCcCCCChHHHHHHHHHcCCC
Q psy7291 81 IVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKTNYLISVEGGWPQCGIGSEISARIMEIPY 156 (158)
Q Consensus 81 ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~~~vvvvEe~~~~GG~g~~i~~~l~~~~~ 156 (158)
||++|.|+..+++|++.|+++||++.|||+.+|||+|++.+.+++++++.|+|+|||+..||+|+.+++.|++++.
T Consensus 197 iiA~G~mv~~al~AA~~L~~~GIsa~Vi~m~tIKPiD~~~i~~~A~~t~~IvT~EeHsi~GGlGsaVAEvlse~~p 272 (312)
T COG3958 197 IIATGVMVAEALEAAEILKKEGISAAVINMFTIKPIDEQAILKAARETGRIVTAEEHSIIGGLGSAVAEVLSENGP 272 (312)
T ss_pred EEecCcchHHHHHHHHHHHhcCCCEEEEecCccCCCCHHHHHHHHhhcCcEEEEecceeecchhHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999986
No 2
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=99.97 E-value=5.3e-31 Score=214.48 Aligned_cols=140 Identities=66% Similarity=1.037 Sum_probs=125.9
Q ss_pred CcccCCHHHHHHHHHHHHhCCCcEEEEecccccccccCCCCcccCCCcccccCceEEEeeccccccCCCcccccCCCcEE
Q psy7291 1 VVSPYNSEDAKGLLKAAIRDPDPVVFLENELLYGVQYPMGDEALSKDFVLPIGKAKVEKQGEAFYHLDAPVIRVTGKDIT 80 (158)
Q Consensus 1 V~~P~d~~e~~~~l~~a~~~~~P~~iR~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vl~~~~~~~~~~~~~~~~~g~~~~ 80 (158)
|++|+|+.|++.|+++|+++++|+|||+++..++.+++.........+.+++|+++++++ |.|++
T Consensus 168 V~~Pad~~e~~~~l~~a~~~~gPv~ir~~~~~~~~~~~~~~~~~~~~~~~~~Gk~~v~r~---------------G~dvt 232 (356)
T PLN02683 168 VLAPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFVLPIGKAKIERE---------------GKDVT 232 (356)
T ss_pred EEEeCCHHHHHHHHHHHHhCCCcEEEEEehhhccCCCCCCCCCCCccccccCCeeEEEEc---------------CCCEE
Confidence 589999999999999999989999999887777766554322112235677899999998 99999
Q ss_pred EEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhCCCeEEEEeCCcCCCChHHHHHHHHHcCC
Q psy7291 81 IVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKTNYLISVEGGWPQCGIGSEISARIMEIP 155 (158)
Q Consensus 81 ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~~~vvvvEe~~~~GG~g~~i~~~l~~~~ 155 (158)
||++|+++..|++|++.|+++||+++|||+++++|||++.|.++++++++|+|+|||...||||++|++++++++
T Consensus 233 Iia~G~~v~~Al~Aa~~L~~~GI~v~VId~~~ikPlD~~~l~~~~~~t~~vvtvEE~~~~GGlGs~Va~~l~e~~ 307 (356)
T PLN02683 233 IVAFSKMVGYALKAAEILAKEGISAEVINLRSIRPLDRDTINASVRKTNRLVTVEEGWPQHGVGAEICASVVEES 307 (356)
T ss_pred EEEccHHHHHHHHHHHHHHhcCCCEEEEECCCCCccCHHHHHHHHhhcCeEEEEeCCCcCCCHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999986
No 3
>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated
Probab=99.97 E-value=7.3e-31 Score=211.69 Aligned_cols=136 Identities=43% Similarity=0.640 Sum_probs=124.4
Q ss_pred CcccCCHHHHHHHHHHHHhCCCcEEEEecccccccccCCCCcccCCCcccccCceEEEeeccccccCCCcccccCCCcEE
Q psy7291 1 VVSPYNSEDAKGLLKAAIRDPDPVVFLENELLYGVQYPMGDEALSKDFVLPIGKAKVEKQGEAFYHLDAPVIRVTGKDIT 80 (158)
Q Consensus 1 V~~P~d~~e~~~~l~~a~~~~~P~~iR~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vl~~~~~~~~~~~~~~~~~g~~~~ 80 (158)
|++|+|+.|++.++++|++.++|+|||+++.+|+.+.+ +..+.+.+++|++.++++ |.|++
T Consensus 145 V~~Psd~~d~~~~l~~a~~~~~Pv~ire~~~l~~~~~~----v~~~~~~~~~Gk~~v~~~---------------G~dit 205 (327)
T CHL00144 145 IVACSTPYNAKGLLKSAIRSNNPVIFFEHVLLYNLKEE----IPDNEYLLPLEKAEVVRP---------------GNDIT 205 (327)
T ss_pred EEEeCCHHHHHHHHHHHHhCCCcEEEEEcHHhcCCCCC----CCCCCccccCCeeEEEEc---------------CCCEE
Confidence 58999999999999999999999999998888864321 222345678999999999 99999
Q ss_pred EEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhCCCeEEEEeCCcCCCChHHHHHHHHHcCC
Q psy7291 81 IVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKTNYLISVEGGWPQCGIGSEISARIMEIP 155 (158)
Q Consensus 81 ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~~~vvvvEe~~~~GG~g~~i~~~l~~~~ 155 (158)
||+||+|+..|++|++.|+++|++++|||+++|+|||++.|.++++++++|+|+|||+..||+|++|++.+++++
T Consensus 206 iia~G~~v~~al~Aa~~L~~~Gi~~~VId~~~ikPlD~~~i~~~~~~t~~vv~vEE~~~~gGlG~~va~~l~e~~ 280 (327)
T CHL00144 206 ILTYSRMRHHVLQAVKVLVEKGYDPEIIDLISLKPLDLGTISKSVKKTHKVLIVEECMKTGGIGAELIAQINEHL 280 (327)
T ss_pred EEEccHHHHHHHHHHHHHHhcCCCEEEEecCcCCCCCHHHHHHHHHhhCcEEEEECCCCCCCHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999986
No 4
>PRK09212 pyruvate dehydrogenase subunit beta; Validated
Probab=99.97 E-value=2.5e-29 Score=202.84 Aligned_cols=136 Identities=56% Similarity=0.884 Sum_probs=122.4
Q ss_pred CcccCCHHHHHHHHHHHHhCCCcEEEEecccccccccCCCCcccCCCcccccCceEEEeeccccccCCCcccccCCCcEE
Q psy7291 1 VVSPYNSEDAKGLLKAAIRDPDPVVFLENELLYGVQYPMGDEALSKDFVLPIGKAKVEKQGEAFYHLDAPVIRVTGKDIT 80 (158)
Q Consensus 1 V~~P~d~~e~~~~l~~a~~~~~P~~iR~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vl~~~~~~~~~~~~~~~~~g~~~~ 80 (158)
|++|+|+.|++.|+++|++.++|+|||+++.+|.... ....+.+.+++|+++++++ |.|++
T Consensus 145 V~~P~d~~e~~~~l~~a~~~~~Pv~i~~~~~~~~~~~----~~~~~~~~~~~Gk~~vl~~---------------G~di~ 205 (327)
T PRK09212 145 VVAPYFAADCKGLLKTAIRDPNPVIFLENEILYGHSH----EVPEEEESIPIGKAAILRE---------------GSDVT 205 (327)
T ss_pred EEeeCCHHHHHHHHHHHHhCCCcEEEEEchhhcCCCC----CCCCCCccccCCeeEEEEe---------------CCCEE
Confidence 6899999999999999999899999998776665321 1222235678999999999 99999
Q ss_pred EEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhCCCeEEEEeCCcCCCChHHHHHHHHHcCC
Q psy7291 81 IVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKTNYLISVEGGWPQCGIGSEISARIMEIP 155 (158)
Q Consensus 81 ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~~~vvvvEe~~~~GG~g~~i~~~l~~~~ 155 (158)
||+||+++..+++|++.|+++|++++|+++++++|||++.|.++++++++|+|+|||+..||+|+++++++.+++
T Consensus 206 iva~G~~~~~a~eAa~~L~~~Gi~v~vi~~~~l~Pld~~~i~~~~~~~~~vv~vEe~~~~gGlg~~la~~l~~~~ 280 (327)
T PRK09212 206 IVTFSIQVKLALEAAELLEKEGISVEVIDLRTLRPLDTETIIESVKKTNRLVVVEEGWPFAGVGAEIAALIMKEA 280 (327)
T ss_pred EEEccHHHHHHHHHHHHHHhcCCcEEEEEEecCCCCCHHHHHHHHHhCCeEEEEcCCCCCCCHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999875
No 5
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=99.96 E-value=3.2e-29 Score=209.63 Aligned_cols=137 Identities=61% Similarity=1.011 Sum_probs=124.3
Q ss_pred CcccCCHHHHHHHHHHHHhCCCcEEEEecccccccccCCCCcccCCCcccccCceEEEeeccccccCCCcccccCCCcEE
Q psy7291 1 VVSPYNSEDAKGLLKAAIRDPDPVVFLENELLYGVQYPMGDEALSKDFVLPIGKAKVEKQGEAFYHLDAPVIRVTGKDIT 80 (158)
Q Consensus 1 V~~P~d~~e~~~~l~~a~~~~~P~~iR~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vl~~~~~~~~~~~~~~~~~g~~~~ 80 (158)
|++|+|+.|++.++++++++++|+||++++.+|+++.+.. .. ..+.+++|+++++++ |.|++
T Consensus 283 V~~P~d~~d~~~ll~~ai~~~~Pv~ile~~~ry~~~~~vp-~~--~~~~~~~Gka~v~r~---------------G~Dvt 344 (464)
T PRK11892 283 VVAPYSAADAKGLLKAAIRDPNPVIFLENEILYGQSFDVP-KL--DDFVLPIGKARIHRE---------------GKDVT 344 (464)
T ss_pred EEEeCCHHHHHHHHHHHhhCCCcEEEEechhhcCCCCCCC-Cc--CCccccCceEEEEEc---------------CCCEE
Confidence 6899999999999999999999999999887787642211 11 235678999999999 99999
Q ss_pred EEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhCCCeEEEEeCCcCCCChHHHHHHHHHcCC
Q psy7291 81 IVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKTNYLISVEGGWPQCGIGSEISARIMEIP 155 (158)
Q Consensus 81 ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~~~vvvvEe~~~~GG~g~~i~~~l~~~~ 155 (158)
||++|+++..|++|++.|+++||+++|||+++|+|||.+.|.++++++++|+|+|||+..||||++|++++++++
T Consensus 345 Iva~G~~v~~Al~Aa~~L~~~GI~~~VIdl~tlkPlD~~~i~~sv~kt~~vvtvEE~~~~gGlG~~va~~l~e~~ 419 (464)
T PRK11892 345 IVSFSIGMTYALKAAEELAKEGIDAEVIDLRTIRPMDTETIVESVKKTNRLVTVEEGWPQSGVGAEIAARVMEQA 419 (464)
T ss_pred EEEccHHHHHHHHHHHHHHhcCCCEEEEECCCCCcCCHHHHHHHHHhcCeEEEEeCCCcCCcHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999986
No 6
>PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional
Probab=99.96 E-value=3.1e-29 Score=204.06 Aligned_cols=137 Identities=58% Similarity=0.830 Sum_probs=123.5
Q ss_pred CcccCCHHHHHHHHHHHHhCCCcEEEEecccccccccCCCCcccCCCcccccCceEEEeeccccccCCCcccccCCCcEE
Q psy7291 1 VVSPYNSEDAKGLLKAAIRDPDPVVFLENELLYGVQYPMGDEALSKDFVLPIGKAKVEKQGEAFYHLDAPVIRVTGKDIT 80 (158)
Q Consensus 1 V~~P~d~~e~~~~l~~a~~~~~P~~iR~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vl~~~~~~~~~~~~~~~~~g~~~~ 80 (158)
|++|+|+.|++.|+++|+++++|+|||+|+++++...+. .....+.+++|+++++++ |.|++
T Consensus 176 V~~Psd~~e~~~~l~~a~~~~~P~~i~~p~~l~r~~~~~---~~~~~~~~~~Gk~~vl~~---------------G~di~ 237 (355)
T PTZ00182 176 VVAPSDPEDAKGLLKAAIRDPNPVVFFEPKLLYRESVEV---VPEADYTLPLGKAKVVRE---------------GKDVT 237 (355)
T ss_pred EEeeCCHHHHHHHHHHHHhCCCcEEEEeehHHhCCCCCC---CCcccccccCCcceEecC---------------CCCEE
Confidence 689999999999999999989999999998877543221 112235677899999998 99999
Q ss_pred EEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhCCCeEEEEeCCcCCCChHHHHHHHHHcCC
Q psy7291 81 IVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKTNYLISVEGGWPQCGIGSEISARIMEIP 155 (158)
Q Consensus 81 ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~~~vvvvEe~~~~GG~g~~i~~~l~~~~ 155 (158)
||+||+++..+++|++.|+++|++++||++++++|||++.|.+.++++++|+|+|||+..||||+.|++++++++
T Consensus 238 Iia~Gs~~~~aleAa~~L~~~Gi~v~vI~~~~l~Pld~e~i~~~~~~~~~IvvvEE~~~~GGlG~~Va~~l~e~~ 312 (355)
T PTZ00182 238 IVGYGSQVHVALKAAEELAKEGISCEVIDLRSLRPWDRETIVKSVKKTGRCVIVHEAPPTCGIGAEIAAQIMEDC 312 (355)
T ss_pred EEEeCHHHHHHHHHHHHHHhCCCcEEEEEEeeCCCCCHHHHHHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999986
No 7
>COG0022 AcoB Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]
Probab=99.96 E-value=1.1e-28 Score=193.09 Aligned_cols=136 Identities=52% Similarity=0.732 Sum_probs=126.6
Q ss_pred CcccCCHHHHHHHHHHHHhCCCcEEEEecccccc-cccCCCCcccCCCcccccCceEEEeeccccccCCCcccccCCCcE
Q psy7291 1 VVSPYNSEDAKGLLKAAIRDPDPVVFLENELLYG-VQYPMGDEALSKDFVLPIGKAKVEKQGEAFYHLDAPVIRVTGKDI 79 (158)
Q Consensus 1 V~~P~d~~e~~~~l~~a~~~~~P~~iR~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~vl~~~~~~~~~~~~~~~~~g~~~ 79 (158)
|+.||++.|++.+|+.|++++.||+|.++|++|+ .+.++ ....|.+++||+.+.|+ |+|+
T Consensus 143 VV~PStpyDAKGLL~aAIrd~dPViflE~k~lY~~~~~eV----P~~~Y~iPlGkA~i~re---------------G~Dv 203 (324)
T COG0022 143 VVMPSTPYDAKGLLKAAIRDPDPVIFLEHKRLYRSFKGEV----PEEDYTIPLGKAKIVRE---------------GSDV 203 (324)
T ss_pred EEecCChHHHHHHHHHHhcCCCCEEEEecHHHhcccccCC----CCCCccccccceeeEec---------------CCce
Confidence 5789999999999999999999999999999998 44443 23567899999999999 9999
Q ss_pred EEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhCCCeEEEEeCCcCCCChHHHHHHHHHcCC
Q psy7291 80 TIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKTNYLISVEGGWPQCGIGSEISARIMEIP 155 (158)
Q Consensus 80 ~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~~~vvvvEe~~~~GG~g~~i~~~l~~~~ 155 (158)
+|||||.|++.+++|+++|.++|+++.|||+|+|+|+|.++|.++++|+.++++|+|..+.+|+|++|++.++|+.
T Consensus 204 Tivtyg~mv~~al~AAe~l~~~Gis~EVIDLRTl~PlD~etIi~SvkKTgR~viV~Ea~~~~g~gaei~A~i~e~~ 279 (324)
T COG0022 204 TIVTYGAMVHTALEAAEELEKEGISAEVIDLRTLSPLDKETIIASVKKTGRLVIVHEAPKTGGIGAEIAALIAEEA 279 (324)
T ss_pred EEEEechHHHHHHHHHHHHhhcCCCeEEEeccccCccCHHHHHHHHHhhCcEEEEEeccccCChHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999988863
No 8
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=99.95 E-value=1.4e-27 Score=206.24 Aligned_cols=136 Identities=23% Similarity=0.364 Sum_probs=118.5
Q ss_pred CcccCCHHHHHHHHHHHHh-CCCcEEEEecccccccccCCCCcccCCCcccccCceEEEeeccccccCCCcccccCCCcE
Q psy7291 1 VVSPYNSEDAKGLLKAAIR-DPDPVVFLENELLYGVQYPMGDEALSKDFVLPIGKAKVEKQGEAFYHLDAPVIRVTGKDI 79 (158)
Q Consensus 1 V~~P~d~~e~~~~l~~a~~-~~~P~~iR~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vl~~~~~~~~~~~~~~~~~g~~~ 79 (158)
|++|+|+.|++.|+++|+. .++|+|||+++..+... + ...+..+.+++||++++++ |.|+
T Consensus 510 V~aPsD~~El~~mL~~A~~~~~gPv~IR~pRg~~~~~-~---~~~~~~~~~~iGK~~vlre---------------G~dv 570 (701)
T PLN02225 510 AMAPADEDELVNMVATAAYVTDRPVCFRFPRGSIVNM-N---YLVPTGLPIEIGRGRVLVE---------------GQDV 570 (701)
T ss_pred EEeeCCHHHHHHHHHHHHhcCCCCEEEEecccccCCC-C---cCCCCCccccCcceEEEEe---------------CCCE
Confidence 6899999999999999985 57999999876533211 0 0001124678899999999 9999
Q ss_pred EEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhCCCeEEEEeCCcCCCChHHHHHHHHHcCCC
Q psy7291 80 TIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKTNYLISVEGGWPQCGIGSEISARIMEIPY 156 (158)
Q Consensus 80 ~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~~~vvvvEe~~~~GG~g~~i~~~l~~~~~ 156 (158)
+||++|+|+..|++|++.|+++|++++|||++|+||||++.|.+++++++.|+|+|||.. ||||++|+++++++++
T Consensus 571 tIia~G~mv~~Al~AA~~L~~~GI~vtVIdlr~ikPLD~e~I~~~~~k~~~vVTvEE~~~-GG~Gs~Va~~l~~~~~ 646 (701)
T PLN02225 571 ALLGYGAMVQNCLHAHSLLSKLGLNVTVADARFCKPLDIKLVRDLCQNHKFLITVEEGCV-GGFGSHVAQFIALDGQ 646 (701)
T ss_pred EEEeccHHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCHHHHHHHHhhcCeEEEEcCCCC-CchHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999999999999999999999999996 9999999999999864
No 9
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=99.95 E-value=2.5e-27 Score=199.20 Aligned_cols=136 Identities=21% Similarity=0.318 Sum_probs=119.9
Q ss_pred CcccCCHHHHHHHHHHHHhCC-CcEEEEecccccccccCCCCcccCCCcccccCceEEEeeccccccCCCcccccCCCcE
Q psy7291 1 VVSPYNSEDAKGLLKAAIRDP-DPVVFLENELLYGVQYPMGDEALSKDFVLPIGKAKVEKQGEAFYHLDAPVIRVTGKDI 79 (158)
Q Consensus 1 V~~P~d~~e~~~~l~~a~~~~-~P~~iR~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vl~~~~~~~~~~~~~~~~~g~~~ 79 (158)
|++|+|.+|++.||++|+.++ +|++||+|+.. ..+.........+++|+|+++++ |.|+
T Consensus 445 i~aP~de~el~~ml~ta~~~~~gP~AiRyPrg~-----~~~~~~~~~~~~~~~Gk~~i~~~---------------G~~v 504 (627)
T COG1154 445 IMAPRDEEELRQMLYTALAQDDGPVAIRYPRGN-----GVGVILTPELEPLEIGKGELLKE---------------GEKV 504 (627)
T ss_pred EecCCCHHHHHHHHHHHHhcCCCCeEEEecCCC-----CCCCCcccccccccccceEEEec---------------CCcE
Confidence 589999999999999999976 89999965431 11111111134578999999999 9999
Q ss_pred EEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhCCCeEEEEeCCcCCCChHHHHHHHHHcCCC
Q psy7291 80 TIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKTNYLISVEGGWPQCGIGSEISARIMEIPY 156 (158)
Q Consensus 80 ~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~~~vvvvEe~~~~GG~g~~i~~~l~~~~~ 156 (158)
+||++|.++..|++|++.|.+.|++++|||+||+||+|++.|.++++.++.++|+||+...||+|+.|+++|+++++
T Consensus 505 ail~~G~~~~~al~vae~L~~~Gi~~TVvd~rfvkPlD~~ll~~La~~h~~~vtlEe~~~~GG~Gs~v~efl~~~~~ 581 (627)
T COG1154 505 AILAFGTMLPEALKVAEKLNAYGISVTVVDPRFVKPLDEALLLELAKSHDLVVTLEENVVDGGFGSAVLEFLAAHGI 581 (627)
T ss_pred EEEecchhhHHHHHHHHHHHhcCCCcEEEcCeecCCCCHHHHHHHHhhcCeEEEEecCcccccHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999985
No 10
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=99.95 E-value=1.2e-26 Score=200.55 Aligned_cols=136 Identities=26% Similarity=0.345 Sum_probs=120.4
Q ss_pred CcccCCHHHHHHHHHHHHhCC-CcEEEEecccccccccCCCCcccCCCcccccCceEEEeeccccccCCCcccccCCCcE
Q psy7291 1 VVSPYNSEDAKGLLKAAIRDP-DPVVFLENELLYGVQYPMGDEALSKDFVLPIGKAKVEKQGEAFYHLDAPVIRVTGKDI 79 (158)
Q Consensus 1 V~~P~d~~e~~~~l~~a~~~~-~P~~iR~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vl~~~~~~~~~~~~~~~~~g~~~ 79 (158)
|++|+|+.|++.|+++|++.+ +|+|||+++..+.... .....+.+++|+++++++ |.|+
T Consensus 439 V~~Psd~~e~~~~l~~a~~~~~~Pv~ir~~r~~~~~~~-----~~~~~~~~~~Gk~~vlr~---------------G~dv 498 (617)
T TIGR00204 439 IMAPSDENELRQMLYTGYHYDDGPIAVRYPRGNAVGVE-----LTPEPEKLPIGKSEVLRK---------------GEKI 498 (617)
T ss_pred EEeeCCHHHHHHHHHHHHhCCCCCEEEEEccCCcCCcc-----cCCccccccCCceEEEEc---------------CCCE
Confidence 589999999999999999865 9999998765442110 011235678899999998 9999
Q ss_pred EEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhCCCeEEEEeCCcCCCChHHHHHHHHHcCCC
Q psy7291 80 TIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKTNYLISVEGGWPQCGIGSEISARIMEIPY 156 (158)
Q Consensus 80 ~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~~~vvvvEe~~~~GG~g~~i~~~l~~~~~ 156 (158)
+||++|+|+..|++|++.|+++|++++|||+++++|||++.+.++++++++|+|+|||+..||||++|++++.++++
T Consensus 499 tIva~G~~v~~al~Aa~~L~~~gi~~~VId~~~lkPlD~e~i~~~~~k~~~vvtvEE~~~~GGlGs~v~~~l~~~~~ 575 (617)
T TIGR00204 499 LILGFGTLVPEALEVAESLNEKGIEATVVDARFVKPLDEELILEIAASHEKLVTVEENAIMGGAGSAVLEFLMDQNK 575 (617)
T ss_pred EEEEcCHHHHHHHHHHHHHHhcCCCEEEEecCcCCcCCHHHHHHHHhhcCeEEEEECCCCccChHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999863
No 11
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=99.94 E-value=6.8e-26 Score=195.18 Aligned_cols=136 Identities=24% Similarity=0.337 Sum_probs=118.2
Q ss_pred CcccCCHHHHHHHHHHHHhC-CCcEEEEecccccccc-cCCCCcccCCCcccccCceEEEeeccccccCCCcccccCCCc
Q psy7291 1 VVSPYNSEDAKGLLKAAIRD-PDPVVFLENELLYGVQ-YPMGDEALSKDFVLPIGKAKVEKQGEAFYHLDAPVIRVTGKD 78 (158)
Q Consensus 1 V~~P~d~~e~~~~l~~a~~~-~~P~~iR~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~vl~~~~~~~~~~~~~~~~~g~~ 78 (158)
|++|+|+.|++.|+++|+.. ++|+|||++|..+... .+. ......+++|+++++++ |.|
T Consensus 486 V~~Psd~~E~~~~l~~a~~~~~~Pv~ir~~R~~~~~~~~~~----~~~~~~~~iGk~~vlre---------------G~d 546 (641)
T PLN02234 486 VMAPSDEAELFNMVATAAAIDDRPSCFRYHRGNGIGVSLPP----GNKGVPLQIGRGRILRD---------------GER 546 (641)
T ss_pred EEeeCCHHHHHHHHHHHHhCCCCCEEEEeecccccccccCC----CCccccccCceEEEEEe---------------CCC
Confidence 68999999999999998864 6999999887654211 110 01123567899999999 999
Q ss_pred EEEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhCCCeEEEEeCCcCCCChHHHHHHHHHcCCC
Q psy7291 79 ITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKTNYLISVEGGWPQCGIGSEISARIMEIPY 156 (158)
Q Consensus 79 ~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~~~vvvvEe~~~~GG~g~~i~~~l~~~~~ 156 (158)
++||++|+++..|++|++.|+++|++++|||+++++|||.+.+..++++++.|||+|||.. ||||++|+++|+++++
T Consensus 547 vtIva~G~~v~~Al~AA~~L~~~GI~v~VId~rsikPlD~~~i~sl~k~~~~vVt~Ee~~~-GG~Gs~Va~~l~e~~~ 623 (641)
T PLN02234 547 VALLGYGSAVQRCLEAASMLSERGLKITVADARFCKPLDVALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGL 623 (641)
T ss_pred EEEEEecHHHHHHHHHHHHHHhcCCCEEEEecCCcCCCCHHHHHHHHHhCCEEEEECCCCC-CcHHHHHHHHHHHcCC
Confidence 9999999999999999999999999999999999999999999999989999999999997 9999999999999986
No 12
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=99.93 E-value=2.3e-25 Score=191.49 Aligned_cols=133 Identities=24% Similarity=0.264 Sum_probs=116.0
Q ss_pred CcccCCHHHHHHHHHHHHhC-CCcEEEEecccccccccCCCCcccCCCcccccCceEEEeeccccccCCCcccccCCCcE
Q psy7291 1 VVSPYNSEDAKGLLKAAIRD-PDPVVFLENELLYGVQYPMGDEALSKDFVLPIGKAKVEKQGEAFYHLDAPVIRVTGKDI 79 (158)
Q Consensus 1 V~~P~d~~e~~~~l~~a~~~-~~P~~iR~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vl~~~~~~~~~~~~~~~~~g~~~ 79 (158)
|++|+|+.|++.|+++|++. ++|+|||++|..+..... ....+..+++.++++ |.|+
T Consensus 406 V~~P~d~~e~~~~l~~a~~~~~gP~~ir~~r~~~~~~~~-------~~~~~~~~k~~v~~~---------------g~dv 463 (581)
T PRK12315 406 YLAPTTKEELIAMLEWALTQHEHPVAIRVPEHGVESGPT-------VDTDYSTLKYEVTKA---------------GEKV 463 (581)
T ss_pred EEecCCHHHHHHHHHHHHhCCCCcEEEEEcCCccCCCCC-------CccCcccceEEEEec---------------CCCE
Confidence 68999999999999999986 799999987665432110 111234568888988 8999
Q ss_pred EEEEechhHHHHHHHHHHHHhC-CCcEEEEEeccccCCCHHHHHHHHhCCCeEEEEeCCcCCCChHHHHHHHHHcCC
Q psy7291 80 TIVGHSKAVETALDAAKILAGQ-GIDAEVINLRSLRPLDIETITKSVMKTNYLISVEGGWPQCGIGSEISARIMEIP 155 (158)
Q Consensus 80 ~ii~~G~~~~~a~ea~~~L~~~-gi~~~vi~~~~l~Pld~~~l~~~~~~~~~vvvvEe~~~~GG~g~~i~~~l~~~~ 155 (158)
+||++|+++..|++|++.|+++ |++++|||+++++|||++.+..+.++++.|+|+|||+..||||++|++++.+.+
T Consensus 464 tiia~G~~v~~Al~Aa~~L~~~~gi~~~Vid~~~ikPlD~~~i~~~~~~~~~vvtvEe~~~~GG~gs~v~~~l~~~~ 540 (581)
T PRK12315 464 AILALGDFYELGEKVAKKLKEELGIDATLINPKFITGLDEELLEKLKEDHELVVTLEDGILDGGFGEKIARYYGNSD 540 (581)
T ss_pred EEEEEchHHHHHHHHHHHHhhhcCCCEEEEecCcCCCCCHHHHHHHHhhCCEEEEEcCCCcCCCHHHHHHHHHHcCC
Confidence 9999999999999999999999 999999999999999999998888888999999999999999999999998864
No 13
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase
Probab=99.93 E-value=3.5e-25 Score=192.09 Aligned_cols=136 Identities=24% Similarity=0.306 Sum_probs=116.2
Q ss_pred CcccCCHHHHHHHHHHHHhC-CCcEEEEecccccccccCCCCcccCCCcccccCceEEEeeccccccCCCcccccCCCcE
Q psy7291 1 VVSPYNSEDAKGLLKAAIRD-PDPVVFLENELLYGVQYPMGDEALSKDFVLPIGKAKVEKQGEAFYHLDAPVIRVTGKDI 79 (158)
Q Consensus 1 V~~P~d~~e~~~~l~~a~~~-~~P~~iR~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vl~~~~~~~~~~~~~~~~~g~~~ 79 (158)
|++|+|+.|++.|+++|++. ++|+|||+++.... ...... ....+.+++|+++++++ |.|+
T Consensus 485 V~~Psd~~E~~~~l~~al~~~~gPv~IR~pr~~~~-~~~~~~--~~~~~~~~iGk~~vlr~---------------G~dv 546 (677)
T PLN02582 485 VMAPSDEAELFHMVATAAAIDDRPSCFRYPRGNGI-GVQLPP--NNKGIPIEVGKGRILLE---------------GERV 546 (677)
T ss_pred EEeeCCHHHHHHHHHHHHhCCCCCEEEEEecCCCC-CcccCC--cccccccccCceEEEEe---------------CCCE
Confidence 68999999999999999975 59999998754211 000000 00123567899999999 8999
Q ss_pred EEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhCCCeEEEEeCCcCCCChHHHHHHHHHcCC
Q psy7291 80 TIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKTNYLISVEGGWPQCGIGSEISARIMEIP 155 (158)
Q Consensus 80 ~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~~~vvvvEe~~~~GG~g~~i~~~l~~~~ 155 (158)
+||++|+|+..|++|++.|+++|++++|||++|++|||++.+..++++++.|||+|||.. ||||+.|++++.+++
T Consensus 547 tIva~G~~v~~Al~Aa~~L~~~GI~~~VId~~~lkPlD~~~i~~~~k~~~~vVtvEe~~~-GG~Gs~va~~l~~~~ 621 (677)
T PLN02582 547 ALLGYGTAVQSCLAAASLLERHGLSATVADARFCKPLDRALIRSLAKSHEVLITVEEGSI-GGFGSHVAQFMALDG 621 (677)
T ss_pred EEEeecHHHHHHHHHHHHHHhcCCCEEEEEcCcCCCCCHHHHHHHhhhCCEEEEECCCCC-CcHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999988999999999997 999999999999986
No 14
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=99.92 E-value=1.8e-24 Score=187.58 Aligned_cols=135 Identities=22% Similarity=0.328 Sum_probs=115.7
Q ss_pred CcccCCHHHHHHHHHHHHhC-CCcEEEEecccccccccCCCCcccCCCcccccCceEEEeeccccccCCCcccccCCCcE
Q psy7291 1 VVSPYNSEDAKGLLKAAIRD-PDPVVFLENELLYGVQYPMGDEALSKDFVLPIGKAKVEKQGEAFYHLDAPVIRVTGKDI 79 (158)
Q Consensus 1 V~~P~d~~e~~~~l~~a~~~-~~P~~iR~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vl~~~~~~~~~~~~~~~~~g~~~ 79 (158)
|++|+|+.|++.|+++|+++ ++|+|||++|..+... . .....+.+++||+.++++ |.|+
T Consensus 448 V~~Psd~~e~~~~l~~a~~~~~~P~~ir~~r~~~~~~-~----~~~~~~~~~~gk~~vlr~---------------G~di 507 (641)
T PRK12571 448 VMAPRDEAELRHMLRTAAAHDDGPIAVRFPRGEGVGV-E----IPAEGTILGIGKGRVPRE---------------GPDV 507 (641)
T ss_pred EEeeCCHHHHHHHHHHHHhCCCCcEEEEEecCcCCcc-c----cCCCCccccCceeEEEec---------------CCCE
Confidence 68999999999999999985 8999999876543210 0 111123467899999998 9999
Q ss_pred EEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhCCCeEEEEeCCcCCCChHHHHHHHHHcCCC
Q psy7291 80 TIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKTNYLISVEGGWPQCGIGSEISARIMEIPY 156 (158)
Q Consensus 80 ~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~~~vvvvEe~~~~GG~g~~i~~~l~~~~~ 156 (158)
+||++|+++..|++|++.|+++|++++|||+++|+|||++.+..+++++ +++|+||+...||||++|++++.++++
T Consensus 508 tIva~G~~v~~aleAa~~L~~~Gi~v~VId~~~lkPlD~~~i~sv~k~~-~vvvveE~~~~gG~g~~v~~~l~~~~~ 583 (641)
T PRK12571 508 AILSVGAHLHECLDAADLLEAEGISVTVADPRFVKPLDEALTDLLVRHH-IVVIVEEQGAMGGFGAHVLHHLADTGL 583 (641)
T ss_pred EEEEecHHHHHHHHHHHHHHhcCCCEEEEEcCcCCCcCHHHHHHHhhhC-CEEEEECCCCCCCHHHHHHHHHHhcCc
Confidence 9999999999999999999999999999999999999999987777655 799999999999999999999998864
No 15
>KOG0524|consensus
Probab=99.92 E-value=2e-24 Score=166.63 Aligned_cols=139 Identities=66% Similarity=1.028 Sum_probs=131.4
Q ss_pred CcccCCHHHHHHHHHHHHhCCCcEEEEecccccccccCCCCcccCCCcccccCceEEEeeccccccCCCcccccCCCcEE
Q psy7291 1 VVSPYNSEDAKGLLKAAIRDPDPVVFLENELLYGVQYPMGDEALSKDFVLPIGKAKVEKQGEAFYHLDAPVIRVTGKDIT 80 (158)
Q Consensus 1 V~~P~d~~e~~~~l~~a~~~~~P~~iR~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vl~~~~~~~~~~~~~~~~~g~~~~ 80 (158)
|++|.++.+++.+|+.|+++++||++.++..+|+..++..++..++++..++||+++.++ |.+++
T Consensus 176 vvapysaedakGLlKaAIRd~NPVV~lEnelLYg~~f~i~~E~ls~~fv~p~gkAkier~---------------G~~iT 240 (359)
T KOG0524|consen 176 VVAPYSAEDAKGLLKAAIRDENPVVFLENELLYGLSFEIPEEALSKDFVLPLGKAKIERE---------------GTHIT 240 (359)
T ss_pred EeccCChhhhhhHHHHhccCCCCeEEEechhhcCCCccCChhhcCcceeeeccceeeeec---------------CCceE
Confidence 579999999999999999999999999999999988887665556678899999999999 99999
Q ss_pred EEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhCCCeEEEEeCCcCCCChHHHHHHHHHcC
Q psy7291 81 IVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKTNYLISVEGGWPQCGIGSEISARIMEI 154 (158)
Q Consensus 81 ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~~~vvvvEe~~~~GG~g~~i~~~l~~~ 154 (158)
||++..++..++||++.|.++|+++.||++|+|+|||.++|...++++.++++||++.+.+|+|++|++.++|+
T Consensus 241 ivt~Sr~v~~~leAA~~L~~~Gvs~EVInlrSirP~D~~tI~~Sv~KT~~lvtVe~~~p~~gigaei~A~i~E~ 314 (359)
T KOG0524|consen 241 IVTYSRMVGHCLEAAETLVAKGVSAEVINLRSIRPFDIETIGASVKKTNRLVTVEEGWPQFGIGAEICAQIMEN 314 (359)
T ss_pred EEEechhHHHHHHHHHHHHhcCCCceeEeeeccCcccHHHHHHHHhhhceEEEEeccccccchhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999885
No 16
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=99.92 E-value=4.8e-24 Score=183.50 Aligned_cols=131 Identities=26% Similarity=0.364 Sum_probs=115.4
Q ss_pred CcccCCHHHHHHHHHHHHhC-CCcEEEEecccccccccCCCCcccCCCcccccCceEEEeeccccccCCCcccccCCCcE
Q psy7291 1 VVSPYNSEDAKGLLKAAIRD-PDPVVFLENELLYGVQYPMGDEALSKDFVLPIGKAKVEKQGEAFYHLDAPVIRVTGKDI 79 (158)
Q Consensus 1 V~~P~d~~e~~~~l~~a~~~-~~P~~iR~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vl~~~~~~~~~~~~~~~~~g~~~ 79 (158)
|++|+|+.|++.++++|++. ++|+|||++|..+... + .+..+.+++|+++++++ |.|+
T Consensus 408 V~~Psd~~e~~~~l~~a~~~~~~P~~ir~~r~~~~~~-~-----~~~~~~~~~Gk~~vl~~---------------G~dv 466 (580)
T PRK05444 408 IMAPSDENELRQMLYTALAYDDGPIAIRYPRGNGVGV-E-----LPELEPLPIGKGEVLRE---------------GEDV 466 (580)
T ss_pred EEeeCCHHHHHHHHHHHHhCCCCcEEEEecCCCCCCC-C-----CCCcccccCCceEEEEc---------------CCCE
Confidence 68999999999999999976 8999999876654211 0 01134578899999998 8999
Q ss_pred EEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhCCCeEEEEeCCcCCCChHHHHHHHHHcCCC
Q psy7291 80 TIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKTNYLISVEGGWPQCGIGSEISARIMEIPY 156 (158)
Q Consensus 80 ~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~~~vvvvEe~~~~GG~g~~i~~~l~~~~~ 156 (158)
+||++|+++..|++|++.|+ +++||++++++|||++.+.++++++++++|+|||+..||||+.+++++.++++
T Consensus 467 tIia~G~~v~~al~Aa~~L~----~~~VId~~~i~p~D~~~i~~~~~~~~~vv~vEe~~~~gG~g~~va~~l~~~~~ 539 (580)
T PRK05444 467 AILAFGTMLAEALKAAERLA----SATVVDARFVKPLDEELLLELAAKHDLVVTVEEGAIMGGFGSAVLEFLADHGL 539 (580)
T ss_pred EEEEccHHHHHHHHHHHHhC----CCEEEEeCcCCccCHHHHHHHHhcCCeEEEEECCCCCCCHHHHHHHHHHhhcC
Confidence 99999999999999999985 79999999999999999999999999999999999999999999999998763
No 17
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=99.88 E-value=1.6e-23 Score=147.26 Aligned_cols=90 Identities=40% Similarity=0.614 Sum_probs=85.5
Q ss_pred CceEEEeeccccccCCCcccccCCCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhCCCeEE
Q psy7291 53 GKAKVEKQGEAFYHLDAPVIRVTGKDITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKTNYLI 132 (158)
Q Consensus 53 g~~~vl~~~~~~~~~~~~~~~~~g~~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~~~vv 132 (158)
|++.++++ |.|++|||||+++..|++|++.|+++|++++|+++++++|||++.|.++++++++++
T Consensus 1 Gk~~~~~~---------------g~di~iia~G~~~~~al~A~~~L~~~Gi~~~vi~~~~i~P~d~~~l~~~~~~~~~vv 65 (124)
T PF02780_consen 1 GKAEVLRE---------------GADITIIAYGSMVEEALEAAEELEEEGIKAGVIDLRTIKPFDEEALLESLKKTGRVV 65 (124)
T ss_dssp TEEEEEES---------------SSSEEEEEETTHHHHHHHHHHHHHHTTCEEEEEEEEEEESSBHHHHHHHSHHHHHHH
T ss_pred CEEEEEeC---------------CCCEEEEeehHHHHHHHHHHHHHHHcCCceeEEeeEEEecccccchHHHHHHhcccc
Confidence 67888888 999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCcCCCChHHHHHHHHHcCCCC
Q psy7291 133 SVEGGWPQCGIGSEISARIMEIPYS 157 (158)
Q Consensus 133 vvEe~~~~GG~g~~i~~~l~~~~~~ 157 (158)
|+|||+..||+|+.+++++.+++++
T Consensus 66 vvee~~~~gg~g~~i~~~l~~~~~~ 90 (124)
T PF02780_consen 66 VVEEHYKIGGLGSAIAEYLAENGFN 90 (124)
T ss_dssp HSETCESEEEEHSSHHHHHHHHTTT
T ss_pred ccccccccccHHHHHHHHHHHhCCc
Confidence 9999999999999999999997653
No 18
>PLN02790 transketolase
Probab=99.80 E-value=7e-19 Score=153.28 Aligned_cols=126 Identities=18% Similarity=0.214 Sum_probs=98.7
Q ss_pred CcccCCHHHHHHHHHHHHh-CCCcEEEEecccccccccCCCCcccC-CCcccccCceEEEeeccccccCCCcccccCCCc
Q psy7291 1 VVSPYNSEDAKGLLKAAIR-DPDPVVFLENELLYGVQYPMGDEALS-KDFVLPIGKAKVEKQGEAFYHLDAPVIRVTGKD 78 (158)
Q Consensus 1 V~~P~d~~e~~~~l~~a~~-~~~P~~iR~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~vl~~~~~~~~~~~~~~~~~g~~ 78 (158)
|++|+|+.|+..|++++++ .++|+|||+++...+. +.. ....+..|+ .++++... ..+.|
T Consensus 481 V~~PaD~~E~~~~l~~al~~~~gP~~irl~R~~~~~-------~~~~~~~~~~~G~-~vl~~~~~----------~~~~d 542 (654)
T PLN02790 481 MLRPADGNETAGAYKVAVTNRKRPTVLALSRQKVPN-------LPGTSIEGVEKGG-YVISDNSS----------GNKPD 542 (654)
T ss_pred EEeCCCHHHHHHHHHHHHHcCCCCEEEEecCCCCCC-------CCCCcccccccCc-EEEEeCCC----------CCCCC
Confidence 6899999999999999997 5799999987543211 111 123466786 56665100 00279
Q ss_pred EEEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHH---HHH-hCCCeEEEEeCCcCCCChHH
Q psy7291 79 ITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETIT---KSV-MKTNYLISVEGGWPQCGIGS 145 (158)
Q Consensus 79 ~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~---~~~-~~~~~vvvvEe~~~~GG~g~ 145 (158)
++||++|+++..|++|++.|+++|++++||++++++|||++... +++ ++++.+|++|+|.. +|+++
T Consensus 543 v~iia~G~~v~~Al~Aa~~L~~~gi~~~VV~~~~ikpld~~~~~y~~~~~~~~~~~vvtiE~~~~-~G~~~ 612 (654)
T PLN02790 543 LILIGTGSELEIAAKAAKELRKEGKKVRVVSMVCWELFEEQSDEYKESVLPSSVTARVSVEAGST-FGWEK 612 (654)
T ss_pred EEEEEcCHHHHHHHHHHHHHHhcCCceEEEecCccchhhhhHHHHHHhhhccccceEEEecCccc-hhHHH
Confidence 99999999999999999999999999999999999999998744 566 66778999999995 78765
No 19
>TIGR00232 tktlase_bact transketolase, bacterial and yeast. This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous.
Probab=99.80 E-value=4.7e-19 Score=154.33 Aligned_cols=123 Identities=21% Similarity=0.213 Sum_probs=98.5
Q ss_pred CcccCCHHHHHHHHHHHH-hCCCcEEEEecccccccccCCCCcccCCCcccccCceEEEeeccccccCCCcccccCCCcE
Q psy7291 1 VVSPYNSEDAKGLLKAAI-RDPDPVVFLENELLYGVQYPMGDEALSKDFVLPIGKAKVEKQGEAFYHLDAPVIRVTGKDI 79 (158)
Q Consensus 1 V~~P~d~~e~~~~l~~a~-~~~~P~~iR~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vl~~~~~~~~~~~~~~~~~g~~~ 79 (158)
|++|+|+.|+..++++|+ +.++|+|||++|...+..+. .....+..|+ +++++. +|.|+
T Consensus 484 v~~PaD~~E~~~~~~~a~~~~~gP~~irl~r~~~~~~~~------~~~~~~~~G~-~vl~~~-------------~g~dv 543 (653)
T TIGR00232 484 VWRPCDGNETAAAWKYALESQDGPTALILSRQNLPQLEE------SSLEKVLKGG-YVLKDS-------------KGPDI 543 (653)
T ss_pred EEeeCCHHHHHHHHHHHHhcCCCcEEEEEcCCccCCCCc------ccccccCCCc-EEEEec-------------CCCCE
Confidence 689999999999999999 56899999987654322110 0112355665 566421 18899
Q ss_pred EEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHH---HHHHHhCCCeEEEEeCCcCCCChH
Q psy7291 80 TIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIET---ITKSVMKTNYLISVEGGWPQCGIG 144 (158)
Q Consensus 80 ~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~---l~~~~~~~~~vvvvEe~~~~GG~g 144 (158)
+||++|+++..|++|++.|+++|++++||++++++|||++. +..+++++..+||+|||+. +|+.
T Consensus 544 ~iia~G~~v~~al~Aa~~L~~~Gi~~~VI~~~~ikpld~~~~~~~~~~~~~~~~vvtvEe~~~-~g~~ 610 (653)
T TIGR00232 544 ILIATGSEVSLAVEAAKKLAAENIKVRVVSMPSFDLFDKQDEEYRESVLPANVTRLAVEAGAA-DEWY 610 (653)
T ss_pred EEEEeChHHHHHHHHHHHHHhcCCcEEEEecccCcccccCCHHHHHHHhcccCceEEEecccH-hHHH
Confidence 99999999999999999999999999999999999997765 7888888889999999986 5553
No 20
>KOG0525|consensus
Probab=99.79 E-value=2e-19 Score=137.55 Aligned_cols=136 Identities=35% Similarity=0.589 Sum_probs=120.8
Q ss_pred CcccCCHHHHHHHHHHHHhCCCcEEEEecccccccccCCCCcccCCCcccccCceEEEeeccccccCCCcccccCCCcEE
Q psy7291 1 VVSPYNSEDAKGLLKAAIRDPDPVVFLENELLYGVQYPMGDEALSKDFVLPIGKAKVEKQGEAFYHLDAPVIRVTGKDIT 80 (158)
Q Consensus 1 V~~P~d~~e~~~~l~~a~~~~~P~~iR~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vl~~~~~~~~~~~~~~~~~g~~~~ 80 (158)
|+.|+.+.|++.+|-.++++++|+++.+||.+|+...+ ++...++.++.+.++++++ |+|++
T Consensus 182 vviprsp~qakglllscirdpnp~iffepk~lyr~a~e---dvp~~dy~iplsqaevire---------------g~dit 243 (362)
T KOG0525|consen 182 VVIPRSPRQAKGLLLSCIRDPNPCIFFEPKILYRQAVE---DVPEGDYMIPLSQAEVIRE---------------GSDIT 243 (362)
T ss_pred EEecCCcchhhceeeeeccCCCceEEechHHHHHHhhh---hCCCCCccccccHHHHhhc---------------CCceE
Confidence 46799999999999999999999999999999976432 2334577889999999999 99999
Q ss_pred EEEechhHHHHHHHHHHHH-hCCCcEEEEEeccccCCCHHHHHHHHhCCCeEEEEeCCcCCCChHHHHHHHHHcC
Q psy7291 81 IVGHSKAVETALDAAKILA-GQGIDAEVINLRSLRPLDIETITKSVMKTNYLISVEGGWPQCGIGSEISARIMEI 154 (158)
Q Consensus 81 ii~~G~~~~~a~ea~~~L~-~~gi~~~vi~~~~l~Pld~~~l~~~~~~~~~vvvvEe~~~~GG~g~~i~~~l~~~ 154 (158)
+++||..++.++|++..-+ +.|+++.+||+++|-|+|++.+.++++++.++++-.|....||||++|++.+.++
T Consensus 244 lv~wgtqvh~i~e~a~l~~ek~giscevidlkti~pwd~d~v~~sv~ktgrllisheapvtggfgaeiastv~er 318 (362)
T KOG0525|consen 244 LVAWGTQVHVIMEQACLAKEKLGISCEVIDLKTIIPWDKDTVEESVQKTGRLLISHEAPVTGGFGAEIASTVQER 318 (362)
T ss_pred EEEcchhhHHHHHHHHhhHHhcCCceEEEeeecccCccHHHHHHHHHhhceEEEeccCCccCcchHHHHHHHHHH
Confidence 9999999999999876443 4599999999999999999999999999999999999999999999999988775
No 21
>PRK05899 transketolase; Reviewed
Probab=99.76 E-value=1.2e-18 Score=151.28 Aligned_cols=121 Identities=20% Similarity=0.282 Sum_probs=96.0
Q ss_pred CcccCCHHHHHHHHHHHHhC-CCcEEEEecccccccccCCCCcccCCCcccccCceEEEeeccccccCCCcccccCCCcE
Q psy7291 1 VVSPYNSEDAKGLLKAAIRD-PDPVVFLENELLYGVQYPMGDEALSKDFVLPIGKAKVEKQGEAFYHLDAPVIRVTGKDI 79 (158)
Q Consensus 1 V~~P~d~~e~~~~l~~a~~~-~~P~~iR~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vl~~~~~~~~~~~~~~~~~g~~~ 79 (158)
|++|+|+.|++.+++++++. ++|+|||+++...+..+ .. .....+..|+ +++++ |.|+
T Consensus 455 V~~P~d~~e~~~~l~~a~~~~~~P~~ir~~r~~~~~~~----~~-~~~~~~~~G~-~~l~~---------------G~dv 513 (624)
T PRK05899 455 VIRPADANETAAAWKYALERKDGPSALVLTRQNLPVLE----RT-AQEEGVAKGG-YVLRD---------------DPDV 513 (624)
T ss_pred EEeCCCHHHHHHHHHHHHHcCCCCEEEEEeCCCCCCcC----Cc-cccccccCCc-EEEec---------------CCCE
Confidence 58999999999999999987 89999998643221100 00 0123466776 77888 8999
Q ss_pred EEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHH---HHHHH-hCCCeEEEEeCCcCCCCh
Q psy7291 80 TIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIET---ITKSV-MKTNYLISVEGGWPQCGI 143 (158)
Q Consensus 80 ~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~---l~~~~-~~~~~vvvvEe~~~~GG~ 143 (158)
+||++|+++..|++|++.|+++|++++||++++++|||++. +...+ +.+..++++|++.. +||
T Consensus 514 tiia~G~~v~~al~Aa~~L~~~gi~~~VId~~sikPlD~~e~h~~~~~lg~~~~~~v~~e~~~~-~g~ 580 (624)
T PRK05899 514 ILIATGSEVHLALEAADELEAEGIKVRVVSMPSTELFDEQDAAYKESVLPAAVTARVAVEAGVA-DGW 580 (624)
T ss_pred EEEEeCHHHHHHHHHHHHHHhcCCcEEEEECCCcchhccCcHHHHhccccccccceEEEccCCc-cch
Confidence 99999999999999999999999999999999999999983 44555 44567888888775 555
No 22
>KOG0523|consensus
Probab=99.74 E-value=1.8e-17 Score=139.47 Aligned_cols=129 Identities=22% Similarity=0.362 Sum_probs=104.6
Q ss_pred CcccCCHHHHHHHHHHHHhCCC-cEEEEecccccccccCCCCcccCCCcccccCceE-EEeeccccccCCCcccccCCCc
Q psy7291 1 VVSPYNSEDAKGLLKAAIRDPD-PVVFLENELLYGVQYPMGDEALSKDFVLPIGKAK-VEKQGEAFYHLDAPVIRVTGKD 78 (158)
Q Consensus 1 V~~P~d~~e~~~~l~~a~~~~~-P~~iR~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-vl~~~~~~~~~~~~~~~~~g~~ 78 (158)
||.|+|..|+..|+..|.+.++ |.++++++. ..+ .......+.+|+++ ++++. ..|
T Consensus 450 v~~PaD~~et~~av~~Aa~~~~~p~i~~~~r~----~~~----~~~~~~~~~igkg~~vl~~~--------------~~d 507 (632)
T KOG0523|consen 450 VFRPADGNETENAVATAANTKGTPSIRTLSRQ----NLP----IYNNTEIEEIGKGKYVLQEV--------------EPD 507 (632)
T ss_pred EEecCchHHHHHHHHHHHhcCCCeeEEEecCc----ccc----ccCCCchhhhccccEEEecC--------------CCC
Confidence 6899999999999999998765 888875322 111 12233457888888 45551 249
Q ss_pred EEEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhCCC-eEEEEeCCcCCCChHHHHHHHH
Q psy7291 79 ITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKTN-YLISVEGGWPQCGIGSEISARI 151 (158)
Q Consensus 79 ~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~~-~vvvvEe~~~~GG~g~~i~~~l 151 (158)
+++|++|+++..+++|++.|+++|++++|+|++++||||...|.++.+.++ ++.|+|+|+..||++..+.+..
T Consensus 508 V~LiG~Gs~v~~cl~AA~~L~~~gi~vrVvd~~~~kplD~~li~~~~q~~e~ri~v~ed~~~~gsi~~~~~a~~ 581 (632)
T KOG0523|consen 508 VILIGTGSEVQECLEAAELLSEDGIKVRVVDPFTWKPLDVALIRSLAQSHEYRISVLEDHVPAGSIEVAVTAAW 581 (632)
T ss_pred EEEEeccHHHHHHHHHHHHHHhcCceEEEecccceeecchHHhhhhhcccceeEEEccCCCCCcchhheeeehh
Confidence 999999999999999999999999999999999999999999999988775 7888888998888887765544
No 23
>TIGR03186 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase. Several bacterial species have a paralog to homodimeric form of the pyruvate dehydrogenase E1 component (see model TIGR00759), often encoded next to L-methionine gamma-lyase gene (mdeA). The member from a strain of Pseudomonas putida was shown to act on alpha-ketobutyrate, which is produced by MdeA.This model serves as an exception model to TIGR00759, as other proteins hitting TIGR00759 should be identified as the pyruvate dehydrogenase E1 component.
Probab=99.74 E-value=1.3e-17 Score=147.52 Aligned_cols=136 Identities=14% Similarity=0.154 Sum_probs=108.2
Q ss_pred CcccCCHHHHHHHHHHHHh------CCCcEEEEecccccccccCCCCcccCCC-cccccCc--e-EEEeeccccccCCCc
Q psy7291 1 VVSPYNSEDAKGLLKAAIR------DPDPVVFLENELLYGVQYPMGDEALSKD-FVLPIGK--A-KVEKQGEAFYHLDAP 70 (158)
Q Consensus 1 V~~P~d~~e~~~~l~~a~~------~~~P~~iR~~~~~~~~~~~~~~~~~~~~-~~~~~g~--~-~vl~~~~~~~~~~~~ 70 (158)
|+.|+|+.|+..+++++++ .++|+|||+.+..+... . ..... ..+..|+ . +++++..
T Consensus 655 v~~PaDa~E~a~iv~~~~~rm~~~~~~gp~YlRl~r~~~~~p--~---~~~~~~~~~~~gi~kg~y~l~~~~-------- 721 (889)
T TIGR03186 655 AWDPAFAYEVAVIVDEGMREMLERQRDEFYYLTVTNENYAQP--S---LPEDRLDAVRRGILKGMYPLDPAA-------- 721 (889)
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhcCCCceEEEEeCCCCCCCC--C---cCCCcccchhcchhheeeEeeccC--------
Confidence 5899999999999999776 57999999865544221 1 11111 1234443 4 6676310
Q ss_pred ccccCCCcEEEEEechhHHHHHHHHHHHHhC-CCcEEEEEeccccCCCHHHHHHHHhCCCeEEEEeCC---cCCCChHH-
Q psy7291 71 VIRVTGKDITIVGHSKAVETALDAAKILAGQ-GIDAEVINLRSLRPLDIETITKSVMKTNYLISVEGG---WPQCGIGS- 145 (158)
Q Consensus 71 ~~~~~g~~~~ii~~G~~~~~a~ea~~~L~~~-gi~~~vi~~~~l~Pld~~~l~~~~~~~~~vvvvEe~---~~~GG~g~- 145 (158)
.+|.+++|+++|.++..|++|++.|+++ ||+++|+++.++||||++.+. +++++.|+++||| +..||||+
T Consensus 722 ---~~g~dV~LlasG~~v~eAL~AAe~L~~~~GI~a~V~sv~SikpLdrd~i~--a~r~~~l~t~Eeh~~~~v~ggLg~~ 796 (889)
T TIGR03186 722 ---LAAARVQLLGSGAILGEVQAAARLLRDDWGIDAAVWSVTSFTELARDGRA--AERAQRLGDAERPPSPHVAQALGAT 796 (889)
T ss_pred ---CCCCCEEEEeccHHHHHHHHHHHHHhhhhCCCeEEEECCCCCHhHHHHHH--HHHhCCcccccccccccHhhhhCCC
Confidence 0177999999999999999999999997 999999999999999999876 6888999999998 99999999
Q ss_pred ------------HHHHHHHcC
Q psy7291 146 ------------EISARIMEI 154 (158)
Q Consensus 146 ------------~i~~~l~~~ 154 (158)
.+++++.+.
T Consensus 797 ~~p~va~~D~~~avae~i~~~ 817 (889)
T TIGR03186 797 QGPVIAATDYVRAVPELIRAY 817 (889)
T ss_pred CCCeeeecchHHHHHHHHHhh
Confidence 999999875
No 24
>PTZ00089 transketolase; Provisional
Probab=99.72 E-value=2.3e-17 Score=143.94 Aligned_cols=121 Identities=14% Similarity=0.141 Sum_probs=93.1
Q ss_pred CcccCCHHHHHHHHHHHHh-CCCcEEEEecccccccccCCCCcccCCCcccccCceEEEeeccccccCCCcccccCCCcE
Q psy7291 1 VVSPYNSEDAKGLLKAAIR-DPDPVVFLENELLYGVQYPMGDEALSKDFVLPIGKAKVEKQGEAFYHLDAPVIRVTGKDI 79 (158)
Q Consensus 1 V~~P~d~~e~~~~l~~a~~-~~~P~~iR~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vl~~~~~~~~~~~~~~~~~g~~~ 79 (158)
|++|+|+.|+..|+++|++ .++|+|||+++...+. +......+..++.+++++.. .+.|+
T Consensus 491 V~~PaD~~E~~~~l~~al~~~~gP~~irl~R~~~~~-------~~~~~~~~~~~g~~vl~~~~------------~~~dv 551 (661)
T PTZ00089 491 VIRPADGTETSGAYALALANAKTPTILCLSRQNTPP-------LPGSSIEGVLKGAYIVVDFT------------NSPQL 551 (661)
T ss_pred EEecCCHHHHHHHHHHHHHcCCCCEEEEecCCCCCC-------cCCCccccccCceEEEeccC------------CCCCE
Confidence 6899999999999999994 5799999986542211 11111233445567888610 03799
Q ss_pred EEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHH---Hh-CCCeEEEEeCCcCCC
Q psy7291 80 TIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKS---VM-KTNYLISVEGGWPQC 141 (158)
Q Consensus 80 ~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~---~~-~~~~vvvvEe~~~~G 141 (158)
+||++|+++..|++|++.|++ |++++||++++++|||++.+... +. ++..++++|+|...|
T Consensus 552 ~iia~G~~v~~Al~Aa~~L~~-Gi~~~Vv~~~~ikp~d~~~~~~~~~v~~e~~~~~vtiE~~~~~g 616 (661)
T PTZ00089 552 ILVASGSEVSLCVEAAKALSK-ELNVRVVSMPCWELFDQQSEEYQQSVLPSGGVPVLSVEAYVSFG 616 (661)
T ss_pred EEEeeCHHHHHHHHHHHHHhc-CCCeEEEeCCCccHHHHHHHHHHHHhcCCCCCceEeHHhhHHHH
Confidence 999999999999999999999 99999999999999999975433 44 455799999998644
No 25
>PRK07119 2-ketoisovalerate ferredoxin reductase; Validated
Probab=99.72 E-value=1.6e-16 Score=129.50 Aligned_cols=149 Identities=16% Similarity=0.193 Sum_probs=109.0
Q ss_pred CcccCCHHHHHHHHHHHHh----CCCcEEEEecccccccccCC--CCc--c--cCCCcccccCce---EEEe--------
Q psy7291 1 VVSPYNSEDAKGLLKAAIR----DPDPVVFLENELLYGVQYPM--GDE--A--LSKDFVLPIGKA---KVEK-------- 59 (158)
Q Consensus 1 V~~P~d~~e~~~~l~~a~~----~~~P~~iR~~~~~~~~~~~~--~~~--~--~~~~~~~~~g~~---~vl~-------- 59 (158)
|++|+|+||+.++..+|++ .+-||++|....+.|.+.++ .+. . .+.++. .+|.. ....
T Consensus 138 vl~p~~~qEa~d~~~~Af~lAE~~~~PViv~~D~~lsh~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 216 (352)
T PRK07119 138 VLAPSSVQEMVDLTMLAFDLADKYRNPVMVLGDGVLGQMMEPVEFPPRKKRPLPPKDWA-VTGTKGRRKNIITSLFLDPE 216 (352)
T ss_pred EEeCCCHHHHHHHHHHHHHHHHHhCCCEEEEcchhhhCceeeecCCchhhcccCCCCCc-cCCCCCCceeccCCcccCHH
Confidence 5789999999999999997 47899999887776654332 110 0 111111 11211 1110
Q ss_pred -------e--ccc----cccCCCcccccCCCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHh
Q psy7291 60 -------Q--GEA----FYHLDAPVIRVTGKDITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVM 126 (158)
Q Consensus 60 -------~--~~~----~~~~~~~~~~~~g~~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~ 126 (158)
. .+. .+....+.+..++.|++||++|+++..+++|++.|+++|++++++++++++|||.+.|.++++
T Consensus 217 ~~~~~~~~~~r~~~~~~~~~~~~e~~~~~dad~~iva~Gs~~~~a~eA~~~L~~~Gi~v~vi~~~~l~Pfp~~~i~~~l~ 296 (352)
T PRK07119 217 ELEKHNLRLQEKYAKIEENEVRYEEYNTEDAELVLVAYGTSARIAKSAVDMAREEGIKVGLFRPITLWPFPEKALEELAD 296 (352)
T ss_pred HHHHHHHHHHHHHHHHHhhCCcceeecCCCCCEEEEEcCccHHHHHHHHHHHHHcCCeEEEEeeceecCCCHHHHHHHHh
Confidence 0 000 001122344455789999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEeCCcCCCChHHHHHHHHH
Q psy7291 127 KTNYLISVEGGWPQCGIGSEISARIM 152 (158)
Q Consensus 127 ~~~~vvvvEe~~~~GG~g~~i~~~l~ 152 (158)
++++|+|+|++. |.+..+|...+.
T Consensus 297 ~~k~VivvE~n~--g~l~~ei~~~~~ 320 (352)
T PRK07119 297 KGKGFLSVEMSM--GQMVEDVRLAVN 320 (352)
T ss_pred CCCEEEEEeCCc--cHHHHHHHHHhC
Confidence 999999999994 779888887663
No 26
>PRK12753 transketolase; Reviewed
Probab=99.70 E-value=1.7e-16 Score=138.46 Aligned_cols=121 Identities=19% Similarity=0.224 Sum_probs=89.3
Q ss_pred CcccCCHHHHHHHHHHHHh-CCCcEEEEecccccccccCCCCcccCCCcccccCceEEEeeccccccCCCcccccCCCcE
Q psy7291 1 VVSPYNSEDAKGLLKAAIR-DPDPVVFLENELLYGVQYPMGDEALSKDFVLPIGKAKVEKQGEAFYHLDAPVIRVTGKDI 79 (158)
Q Consensus 1 V~~P~d~~e~~~~l~~a~~-~~~P~~iR~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vl~~~~~~~~~~~~~~~~~g~~~ 79 (158)
|++|+|+.|+..++++|++ .++|+|||++|...+.-+. . ......+..|+ +++++.+ .+.|+
T Consensus 490 v~~PaD~~E~~~~~~~al~~~~gP~~irl~R~~~~~~~~---~-~~~~~~~~~G~-~vl~~~~------------~~~dv 552 (663)
T PRK12753 490 TWRPCDQVEAAVAWKLAIERHNGPTALILSRQNLAQQER---T-PEQVKNIARGG-YILKDSG------------GKPDL 552 (663)
T ss_pred EEccCCHHHHHHHHHHHHhcCCCCEEEEecCCCCCCCCC---c-ccchhhccCCc-EEEeccC------------CCCCE
Confidence 6899999999999999998 5899999986543211100 0 00012344565 7787720 02499
Q ss_pred EEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHH--HH-HHhC-CCeEEEEeCCc
Q psy7291 80 TIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETI--TK-SVMK-TNYLISVEGGW 138 (158)
Q Consensus 80 ~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l--~~-~~~~-~~~vvvvEe~~ 138 (158)
+||++|+++..|++|++.|+++|++++||++++++|||++.+ ++ .+.. ....+++|+|.
T Consensus 553 ~iia~Gs~v~~al~Aa~~L~~~gi~~~Vv~~~~~kp~d~~~~~y~~~vl~~~~~~~vtvE~~~ 615 (663)
T PRK12753 553 ILIATGSEVEITLQAAEKLTAEGRNVRVVSMPSTDIFDAQDEAYRESVLPSNVTARVAVEAGI 615 (663)
T ss_pred EEEEeCHHHHHHHHHHHHHHhcCCCcEEEECCcCCccchhHHHHHHhhcccccceEEEEccCh
Confidence 999999999999999999999999999999999999999975 22 1222 22459999983
No 27
>PRK08659 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Validated
Probab=99.67 E-value=2.2e-15 Score=123.88 Aligned_cols=150 Identities=17% Similarity=0.207 Sum_probs=108.7
Q ss_pred CcccCCHHHHHHHHHHHHh----CCCcEEEEecccccccccCCC--C--ccc-------C------CCcc-----cc---
Q psy7291 1 VVSPYNSEDAKGLLKAAIR----DPDPVVFLENELLYGVQYPMG--D--EAL-------S------KDFV-----LP--- 51 (158)
Q Consensus 1 V~~P~d~~e~~~~l~~a~~----~~~P~~iR~~~~~~~~~~~~~--~--~~~-------~------~~~~-----~~--- 51 (158)
|++|+|.||+.++...|++ ++.|++++....+.|...++. + ... . ..+. +.
T Consensus 138 vl~p~~~QEa~d~~~~Af~lAE~~~~PViv~~D~~lsh~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (376)
T PRK08659 138 ALSPSSVQECFDLTIRAFNLAEKYRTPVIVLADEVVGHMREKVVLPEPDEIEIIERKLPKVPPEAYKPFDDPEGGVPPMP 217 (376)
T ss_pred EEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEechHhhCCcccccCCChhhccccccccCCCCccccCCCCCCCCCCCCCc
Confidence 5899999999999999997 478999998776666543321 0 000 0 0000 00
Q ss_pred -cCceEE--Ee---ec---------------------cc---ccc-CCCcccccCCCcEEEEEechhHHHHHHHHHHHHh
Q psy7291 52 -IGKAKV--EK---QG---------------------EA---FYH-LDAPVIRVTGKDITIVGHSKAVETALDAAKILAG 100 (158)
Q Consensus 52 -~g~~~v--l~---~~---------------------~~---~~~-~~~~~~~~~g~~~~ii~~G~~~~~a~ea~~~L~~ 100 (158)
+|.... .+ +. +. ... ..++.+..++.|++||++|+++..+++|++.|++
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~e~~~~~~ad~~iv~~Gs~~~~a~eAv~~Lr~ 297 (376)
T PRK08659 218 AFGDGYRFHVTGLTHDERGFPTTDPETHEKLVRRLVRKIEKNRDDIVLYEEYMLEDAEVVVVAYGSVARSARRAVKEARE 297 (376)
T ss_pred cCCCCCeEEeCCccccCCCCcCcCHHHHHHHHHHHHHHHHHHHhhcCCceeecCCCCCEEEEEeCccHHHHHHHHHHHHh
Confidence 021111 00 00 00 001 2344445567899999999999999999999999
Q ss_pred CCCcEEEEEeccccCCCHHHHHHHHhCCCeEEEEeCCcCCCChHHHHHHHHH
Q psy7291 101 QGIDAEVINLRSLRPLDIETITKSVMKTNYLISVEGGWPQCGIGSEISARIM 152 (158)
Q Consensus 101 ~gi~~~vi~~~~l~Pld~~~l~~~~~~~~~vvvvEe~~~~GG~g~~i~~~l~ 152 (158)
+|++++++++++++|||.+.|.++++++++|+|+|+| .|.+..++...+.
T Consensus 298 ~G~~v~~l~~~~l~Pfp~~~i~~~~~~~k~VivvEe~--~g~l~~el~~~~~ 347 (376)
T PRK08659 298 EGIKVGLFRLITVWPFPEEAIRELAKKVKAIVVPEMN--LGQMSLEVERVVN 347 (376)
T ss_pred cCCceEEEEeCeecCCCHHHHHHHHhcCCEEEEEeCC--HHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999 4888888887764
No 28
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=99.66 E-value=1.4e-15 Score=131.55 Aligned_cols=150 Identities=14% Similarity=0.143 Sum_probs=105.3
Q ss_pred CcccCCHHHHHHHHHHHHh----CCCcEEEEecccccccccCCC--Cc-cc--CCCcccccCceEEE-------ee---c
Q psy7291 1 VVSPYNSEDAKGLLKAAIR----DPDPVVFLENELLYGVQYPMG--DE-AL--SKDFVLPIGKAKVE-------KQ---G 61 (158)
Q Consensus 1 V~~P~d~~e~~~~l~~a~~----~~~P~~iR~~~~~~~~~~~~~--~~-~~--~~~~~~~~g~~~vl-------~~---~ 61 (158)
|++|+|.||+.++..+|++ ++-||++|......|.+.++. +. .. ..++..++..|..+ ++ .
T Consensus 130 vl~p~~~qE~~d~~~~Af~lae~~~~PV~v~~d~~l~h~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (595)
T TIGR03336 130 CLEPSTPQEAKDMVKYAFELSEKFGLPVILRPTTRISHMRGDVELGEIPKEEVVKGFEKDPERYVMVPAIARVRHKKLLS 209 (595)
T ss_pred EECCCCHHHHHHHHHHHHHHHHHHCCCEEEEEeeeeccceeeEecCCCcccccccCCCCChhhcCCCchhHHHHHHHHHH
Confidence 5899999999999999997 588999998877776553321 00 00 00011111112111 00 0
Q ss_pred ---cc---cccCCCcccccCCCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhCCCeEEEEe
Q psy7291 62 ---EA---FYHLDAPVIRVTGKDITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKTNYLISVE 135 (158)
Q Consensus 62 ---~~---~~~~~~~~~~~~g~~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~~~vvvvE 135 (158)
.. .....++.+..++.|++||++|+++..++++++++ |+++++++++++||||++.|.+++++++.|+|+|
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~di~iv~~G~~~~~a~ea~~~~---Gi~~~v~~~~~i~Pld~~~i~~~~~~~~~vivvE 286 (595)
T TIGR03336 210 KQHKLREELNESPLNRLEINGAKIGVIASGIAYNYVKEALERL---GVDVSVLKIGFTYPVPEGLVEEFLSGVEEVLVVE 286 (595)
T ss_pred HHHHHHHHHHhCCCceeccCCCCEEEEEcCHHHHHHHHHHHHc---CCCeEEEEeCCCCCCCHHHHHHHHhcCCeEEEEe
Confidence 00 11112333334468999999999999999988775 9999999999999999999999999999999999
Q ss_pred CCcCCCChHHHHHHHHHcCC
Q psy7291 136 GGWPQCGIGSEISARIMEIP 155 (158)
Q Consensus 136 e~~~~GG~g~~i~~~l~~~~ 155 (158)
||. +++++.+...+.+.+
T Consensus 287 e~~--~~~~~~~~~~~~~~~ 304 (595)
T TIGR03336 287 ELE--PVVEEQVKALAGTAG 304 (595)
T ss_pred CCc--cHHHHHHHHHHHhcC
Confidence 998 567777766665543
No 29
>PRK09627 oorA 2-oxoglutarate-acceptor oxidoreductase subunit OorA; Reviewed
Probab=99.66 E-value=2e-15 Score=124.00 Aligned_cols=80 Identities=18% Similarity=0.148 Sum_probs=74.0
Q ss_pred ccccCCCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhCCCeEEEEeCCcCCCChHHHHHHH
Q psy7291 71 VIRVTGKDITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKTNYLISVEGGWPQCGIGSEISAR 150 (158)
Q Consensus 71 ~~~~~g~~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~~~vvvvEe~~~~GG~g~~i~~~ 150 (158)
.+..++.|++||+||+++..+.+|++.|+++|++++++++++++|||++.|+++++++++|+|+|++. |.|+.+|.+.
T Consensus 269 ~y~~~dAd~~IV~~GSt~~~~keAv~~lr~~G~kvg~l~~~~~~PfP~~~i~~~l~~~k~viVvE~n~--Gql~~~v~~~ 346 (375)
T PRK09627 269 EYMLDDAEILIIAYGSVSLSAKEAIKRLREEGIKVGLFRPITLWPSPAKKLKEIGDKFEKILVIELNM--GQYLEEIERV 346 (375)
T ss_pred eeCCCCCCEEEEEeCCCHHHHHHHHHHHHhcCCeEEEEEeCeEECCCHHHHHHHHhcCCEEEEEcCCh--HHHHHHHHHH
Confidence 34445689999999999999999999999999999999999999999999999999999999999998 9999999888
Q ss_pred HH
Q psy7291 151 IM 152 (158)
Q Consensus 151 l~ 152 (158)
+.
T Consensus 347 ~~ 348 (375)
T PRK09627 347 MQ 348 (375)
T ss_pred hC
Confidence 74
No 30
>PRK09405 aceE pyruvate dehydrogenase subunit E1; Reviewed
Probab=99.64 E-value=2e-15 Score=133.90 Aligned_cols=137 Identities=18% Similarity=0.208 Sum_probs=104.3
Q ss_pred CcccCCHHHHHHHHHHHHh----CCC--cEEEEecccccccccCCCCcccCCCcccccCce-EEEeeccccccCCCcccc
Q psy7291 1 VVSPYNSEDAKGLLKAAIR----DPD--PVVFLENELLYGVQYPMGDEALSKDFVLPIGKA-KVEKQGEAFYHLDAPVIR 73 (158)
Q Consensus 1 V~~P~d~~e~~~~l~~a~~----~~~--P~~iR~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~vl~~~~~~~~~~~~~~~ 73 (158)
|++|+|+.|+..+++++++ .++ |.|||+....+.. + . .+..+.+.+||. +++++.+. .
T Consensus 660 v~~PADa~E~a~iv~~~l~rm~~~~~~~~yYlrl~ne~~~~--~---~-~pe~~~~~igKg~y~Lr~g~~---------~ 724 (891)
T PRK09405 660 SYDPAFAYEVAVIVQDGLRRMYGEQENVFYYITVMNENYHQ--P---A-MPEGAEEGILKGMYKLETAEG---------K 724 (891)
T ss_pred EEeCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCCC--C---C-CCcccccccceEEEEeccCCC---------C
Confidence 5899999999999999876 445 7778863221111 1 0 112345678886 88887200 0
Q ss_pred cCCCcEEEEEechhHHHHHHHHHHHHh-CCCcEEEEEeccccCCCHHHHHHHH---------hCCCeEEEEeCCcCCCCh
Q psy7291 74 VTGKDITIVGHSKAVETALDAAKILAG-QGIDAEVINLRSLRPLDIETITKSV---------MKTNYLISVEGGWPQCGI 143 (158)
Q Consensus 74 ~~g~~~~ii~~G~~~~~a~ea~~~L~~-~gi~~~vi~~~~l~Pld~~~l~~~~---------~~~~~vvvvEe~~~~GG~ 143 (158)
.++.+++|+++|.++..|++|++.|++ +||+++|+++.++||||.+.+.... +++..|+++|+| .||+
T Consensus 725 ~~~~dV~LlasG~~v~eAL~AAe~L~~~~GI~a~Visv~SikpLdrd~i~~~~~~~l~~~~~~~~~~V~t~ee~--~gG~ 802 (891)
T PRK09405 725 KGKPKVQLLGSGTILREVLEAAEILAEDYGVAADVWSVTSFNELARDGQDVERWNMLHPTEEPRVPYVTQVLKG--AEGP 802 (891)
T ss_pred CCCCCEEEEeccHHHHHHHHHHHHHhhhhCCCeEEEECCCCCHhhHHHHHHHHHhhcCcccccccchhhhhhcc--cCCc
Confidence 002389999999999999999999998 7999999999999999999887766 567789999999 6888
Q ss_pred H-------HHHHHHHHcC
Q psy7291 144 G-------SEISARIMEI 154 (158)
Q Consensus 144 g-------~~i~~~l~~~ 154 (158)
+ +.+++.|++.
T Consensus 803 ~Vtv~D~~~aVae~la~~ 820 (891)
T PRK09405 803 VVAATDYMKLFAEQIRAF 820 (891)
T ss_pred EEEecchHHHHHHHHHHh
Confidence 8 8888888764
No 31
>PRK12754 transketolase; Reviewed
Probab=99.61 E-value=6.5e-15 Score=128.34 Aligned_cols=126 Identities=17% Similarity=0.171 Sum_probs=90.5
Q ss_pred CcccCCHHHHHHHHHHHHhC-CCcEEEEecccccccccCCCCcccCCCcccccCceEEEeeccccccCCCcccccCCCcE
Q psy7291 1 VVSPYNSEDAKGLLKAAIRD-PDPVVFLENELLYGVQYPMGDEALSKDFVLPIGKAKVEKQGEAFYHLDAPVIRVTGKDI 79 (158)
Q Consensus 1 V~~P~d~~e~~~~l~~a~~~-~~P~~iR~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vl~~~~~~~~~~~~~~~~~g~~~ 79 (158)
|+.|+|+.|+..+++++++. ++|+|||+++...+.-+. .......+..|+ +++++.. .+.|+
T Consensus 490 V~~PaD~~E~~~~~~~a~~~~~gP~yirl~R~~~p~~~~----~~~~~~~~~~G~-~vl~~~~------------~~~dv 552 (663)
T PRK12754 490 TWRPCDQVESAVAWKYGVERQDGPTALILSRQNLAQQER----TEEQLANIARGG-YVLKDCA------------GQPEL 552 (663)
T ss_pred EecCCCHHHHHHHHHHHHhCCCCCEEEEeCCCCCCCCCC----ccchhhhcccCc-EEEEecC------------CCCCE
Confidence 68999999999999999986 799999987543221110 000012345565 6777620 01499
Q ss_pred EEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHH--HHH-HHhCC-CeEEEEeCCcCCCChH
Q psy7291 80 TIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIET--ITK-SVMKT-NYLISVEGGWPQCGIG 144 (158)
Q Consensus 80 ~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~--l~~-~~~~~-~~vvvvEe~~~~GG~g 144 (158)
+||++|+++..|++|++.|+++||+++||++++++|||++. .++ .+... ...+++|.+. ..|+.
T Consensus 553 ~iiatGs~v~~Al~Aa~~L~~~Gi~~~Vvs~~s~kp~d~q~~~y~~~il~~~~~~~v~iE~~~-~~~w~ 620 (663)
T PRK12754 553 IFIATGSEVELAVAAYEKLTAEGVKARVVSMPSTDAFDKQDAAYRESVLPKAVSARVAVEAGI-ADYWY 620 (663)
T ss_pred EEEEECHHHHHHHHHHHHHHhhCCCcEEEEcCccCcCCCCCHHHHHhcCccccccceEeeccc-ccchh
Confidence 99999999999999999999999999999999999999972 333 23222 2358999864 33443
No 32
>PRK09622 porA pyruvate flavodoxin oxidoreductase subunit alpha; Reviewed
Probab=99.55 E-value=3.5e-14 Score=117.87 Aligned_cols=83 Identities=23% Similarity=0.362 Sum_probs=74.3
Q ss_pred CcccccCCCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhCCCeEEEEeCCcCCCChHHHHH
Q psy7291 69 APVIRVTGKDITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKTNYLISVEGGWPQCGIGSEIS 148 (158)
Q Consensus 69 ~~~~~~~g~~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~~~vvvvEe~~~~GG~g~~i~ 148 (158)
++.+..++.+++||++|+++..+++|++.|+++|++++++++++++|||.+.|.++++++++|+|+|++...||+|+.+.
T Consensus 260 ~e~~~~edad~~iV~~Gs~~~~a~ea~~~L~~~G~kvgvi~~r~~~Pfp~~~l~~~l~~~k~VvVvE~~~~~Gg~G~l~~ 339 (407)
T PRK09622 260 VETYQLEDAEVAIVALGTTYESAIVAAKEMRKEGIKAGVATIRVLRPFPYERLGQALKNLKALAILDRSSPAGAMGALFN 339 (407)
T ss_pred eeecCCCCCCEEEEEEChhHHHHHHHHHHHHhCCCCeEEEEeeEhhhCCHHHHHHHHhcCCEEEEEeCCCCCCCccHHHH
Confidence 34444567899999999999999999999999999999999999999999999999999999999999999999997554
Q ss_pred HHH
Q psy7291 149 ARI 151 (158)
Q Consensus 149 ~~l 151 (158)
+.+
T Consensus 340 ev~ 342 (407)
T PRK09622 340 EVT 342 (407)
T ss_pred HHH
Confidence 443
No 33
>TIGR03710 OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha subunit. The genes for this enzyme in Prevotella intermedia 17, Persephonella marina EX-H1 and Picrophilus torridus DSM 9790 are in close proximity to a variety of TCA cycle genes. Persephonella marina and P. torridus are believed to encode complete TCA cycles, and none of these contains the lipoate-based 2-oxoglutarate dehydrogenase (E1/E2/E3) system. That system is presumed to be replaced by this one. In fact, the lipoate system is absent in most organisms possessing a member of this family, providing additional circumstantial evidence that many of these enzymes are capable of acting as 2-oxoglutarate dehydrogenases and supporting flux through TCA cycles in either the forward or reverse directions.
Probab=99.55 E-value=5.7e-14 Score=120.82 Aligned_cols=79 Identities=18% Similarity=0.278 Sum_probs=73.2
Q ss_pred cccCCCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhCCCeEEEEeCCcCCCChHHHHHHHH
Q psy7291 72 IRVTGKDITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKTNYLISVEGGWPQCGIGSEISARI 151 (158)
Q Consensus 72 ~~~~g~~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~~~vvvvEe~~~~GG~g~~i~~~l 151 (158)
+..++.+++||+||++...+.+|++.|+++|++++++++++++|||.+.|.++++++++|+|+|++. .|.+..+|...+
T Consensus 459 ~~~~da~~~iv~~Gs~~~~~~eav~~lr~~G~kvg~l~~~~~~PfP~~~i~~~l~~~k~v~VvE~n~-~Gql~~~v~~~~ 537 (562)
T TIGR03710 459 YGDEDADVLVIGWGSTYGAIREAVERLRAEGIKVALLHLRLLYPFPKDELAELLEGAKKVIVVEQNA-TGQLAKLLRAET 537 (562)
T ss_pred ecCCCCCEEEEEeCCCHHHHHHHHHHHHhcCCeEEEEEeCeecCCCHHHHHHHHhcCCEEEEEccCh-hhhHHHHHHHHh
Confidence 3445689999999999999999999999999999999999999999999999999999999999997 499999998876
No 34
>PRK13012 2-oxoacid dehydrogenase subunit E1; Provisional
Probab=99.52 E-value=5.7e-14 Score=125.06 Aligned_cols=124 Identities=15% Similarity=0.142 Sum_probs=91.9
Q ss_pred CcccCCHHHHHHHHHHHHh----C--CCcEEEEecccccccccCCCCcccCCCcccccCceEEEeeccccccCCCccccc
Q psy7291 1 VVSPYNSEDAKGLLKAAIR----D--PDPVVFLENELLYGVQYPMGDEALSKDFVLPIGKAKVEKQGEAFYHLDAPVIRV 74 (158)
Q Consensus 1 V~~P~d~~e~~~~l~~a~~----~--~~P~~iR~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vl~~~~~~~~~~~~~~~~ 74 (158)
|+.|+|+.|+..+++.+++ . ++|+|||+.+..+.+.. -.. .....+..|+ .++++..
T Consensus 668 V~~PADa~E~a~iv~~al~~m~~~~~~~p~YIrL~r~~~~~p~--~~~--~~~~~i~kG~-y~l~~~~------------ 730 (896)
T PRK13012 668 AYDPAFAYELAVIVDDGMRRMLEEQEDVFYYLTVMNENYAQPA--LPE--GAEEGILKGM-YRLAAAA------------ 730 (896)
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhccCCCeEEEEecCCCCCCCC--CCc--cchhccccCc-EEEeccC------------
Confidence 5899999999999998773 2 67999998765543211 000 0123455676 4453310
Q ss_pred CCCcEEEEEechhHHHHHHHHHHHHhC-CCcEEEEEeccccCCCHHHHHHHHhCCCeEEEEeCCcCCCChH----HHHHH
Q psy7291 75 TGKDITIVGHSKAVETALDAAKILAGQ-GIDAEVINLRSLRPLDIETITKSVMKTNYLISVEGGWPQCGIG----SEISA 149 (158)
Q Consensus 75 ~g~~~~ii~~G~~~~~a~ea~~~L~~~-gi~~~vi~~~~l~Pld~~~l~~~~~~~~~vvvvEe~~~~GG~g----~~i~~ 149 (158)
++.+++||++|+++..|++|++.|+++ ||+++|+++.+++|||++.+.. |+|+..||+| +.+.+
T Consensus 731 ~g~dv~LiasGs~v~eAl~AAe~L~~e~GI~a~V~sv~S~kpLd~d~i~~-----------E~hn~~gglg~~~~sy~~~ 799 (896)
T PRK13012 731 EAPRVQLLGSGAILREVLAAARLLADDWGVDADVWSVTSFTELRRDGLAA-----------ERANLLGPAEEARVPYVTQ 799 (896)
T ss_pred CCCCEEEEEecHHHHHHHHHHHHHHhhhCCCeEEEECCCCCHhHHHHHHH-----------HHHhhcCCCccccccHHHH
Confidence 156999999999999999999999999 9999999999999999997733 8888888888 54444
Q ss_pred HHH
Q psy7291 150 RIM 152 (158)
Q Consensus 150 ~l~ 152 (158)
.|.
T Consensus 800 ~l~ 802 (896)
T PRK13012 800 CLA 802 (896)
T ss_pred hhc
Confidence 443
No 35
>PRK09404 sucA 2-oxoglutarate dehydrogenase E1 component; Reviewed
Probab=99.47 E-value=7.8e-13 Score=118.40 Aligned_cols=134 Identities=18% Similarity=0.206 Sum_probs=99.7
Q ss_pred CcccCCHHHHHHHHHHHH-hC-CCcEEEEecccccccccCCCC--cccCCCcccccCceEEEeeccccccCCCcccccCC
Q psy7291 1 VVSPYNSEDAKGLLKAAI-RD-PDPVVFLENELLYGVQYPMGD--EALSKDFVLPIGKAKVEKQGEAFYHLDAPVIRVTG 76 (158)
Q Consensus 1 V~~P~d~~e~~~~l~~a~-~~-~~P~~iR~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~vl~~~~~~~~~~~~~~~~~g 76 (158)
|+.|+++.++..+|+.++ +. +.|++|.++|.+|+.+..+.. +.....+...+++.. .++ +
T Consensus 741 Vv~pstpad~~~lLr~q~~r~~r~Pvv~~~pK~L~r~~~~~s~~~e~~~~~f~~vi~~~~-~~~---------------~ 804 (924)
T PRK09404 741 VCNPTTPAQYFHLLRRQALRPFRKPLVVMTPKSLLRHPLAVSSLEELAEGSFQPVIGDID-ELD---------------P 804 (924)
T ss_pred EEecCCHHHHHHHHHHHHhhCCCCCEEEeccHHHhCCCCCCCCHHHcCCCCceeeccccc-ccC---------------c
Confidence 578999999999999864 65 599999999999865422111 111111222222221 122 5
Q ss_pred CcE--EEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhCC---CeEEEEeCCcCCCChHHHHHHHH
Q psy7291 77 KDI--TIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKT---NYLISVEGGWPQCGIGSEISARI 151 (158)
Q Consensus 77 ~~~--~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~---~~vvvvEe~~~~GG~g~~i~~~l 151 (158)
.++ +|||||.++..++++++.+.. .++.||++++|+|||.+.|.++++++ +++++++|...+.|....|...|
T Consensus 805 ~~v~r~iv~~Gk~~~~~~~a~~~~~~--~~v~ii~le~L~P~~~~~i~~~v~k~~~~~~~v~vqEe~~n~G~~~~~~~~~ 882 (924)
T PRK09404 805 KKVKRVVLCSGKVYYDLLEARRKRGI--DDVAIVRIEQLYPFPHEELAAELAKYPNAKEVVWCQEEPKNQGAWYFIQHHL 882 (924)
T ss_pred cceeEEEEEcCHHHHHHHHHHHhCCC--CCEEEEEeeeeCCCCHHHHHHHHHhcCCCCeEEEEeeCCCCCCcHHHHHHHH
Confidence 678 799999999999999875532 48999999999999999999999997 48889988888999988777665
Q ss_pred H
Q psy7291 152 M 152 (158)
Q Consensus 152 ~ 152 (158)
.
T Consensus 883 ~ 883 (924)
T PRK09404 883 E 883 (924)
T ss_pred H
Confidence 4
No 36
>PRK08366 vorA 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=99.41 E-value=1.6e-12 Score=107.29 Aligned_cols=83 Identities=14% Similarity=0.233 Sum_probs=72.5
Q ss_pred cccccCCCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhCCCeEEEEeCCcCCCChH---HH
Q psy7291 70 PVIRVTGKDITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKTNYLISVEGGWPQCGIG---SE 146 (158)
Q Consensus 70 ~~~~~~g~~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~~~vvvvEe~~~~GG~g---~~ 146 (158)
+.+..+++|++||++|+....+.+|++.|+++|++++++++++++|||.+.|.++++++++|+|+|++...|++| .+
T Consensus 253 e~y~~edAe~~iV~~Gs~~~~~~eav~~lr~~G~kvg~l~i~~~~PfP~~~i~~~l~~~k~ViVvE~n~~~Gq~g~l~~e 332 (390)
T PRK08366 253 ETYYTDDADFVFMGMGSLMGTVKEAVDLLRKEGYKVGYAKVRWFRPFPKEELYEIAESVKGIAVLDRNFSFGQEGILFTE 332 (390)
T ss_pred eecCCCCCCEEEEEeCccHHHHHHHHHHHHhcCCceeeEEEeeecCCCHHHHHHHHhcCCEEEEEeCCCCCCcccHHHHH
Confidence 344455789999999999999999999999999999999999999999999999999999999999998767754 45
Q ss_pred HHHHHH
Q psy7291 147 ISARIM 152 (158)
Q Consensus 147 i~~~l~ 152 (158)
+...|.
T Consensus 333 v~~~l~ 338 (390)
T PRK08366 333 AKGALY 338 (390)
T ss_pred HHHHHh
Confidence 555543
No 37
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=99.40 E-value=9.1e-12 Score=106.19 Aligned_cols=150 Identities=21% Similarity=0.261 Sum_probs=108.5
Q ss_pred CcccCCHHHHHHHHHHHHh----CCCcEEEEecccccccccCC--CC----cccCCC-cc-cccCceEEEee--------
Q psy7291 1 VVSPYNSEDAKGLLKAAIR----DPDPVVFLENELLYGVQYPM--GD----EALSKD-FV-LPIGKAKVEKQ-------- 60 (158)
Q Consensus 1 V~~P~d~~e~~~~l~~a~~----~~~P~~iR~~~~~~~~~~~~--~~----~~~~~~-~~-~~~g~~~vl~~-------- 60 (158)
|+.|+|+||++++++.+++ ++.|+++|.+++..|.+..+ +. ...+.. +. ..++++ ++.+
T Consensus 142 vLeP~d~Qea~d~~~~afelSe~~~~pVilr~ttr~~h~~~~V~~~~~~~~~~~~~~~~~~k~~~r~-V~~p~~~~~~~~ 220 (640)
T COG4231 142 VLEPSDPQEAYDYVKYAFELSEKSGLPVILRTTTRVSHSRGDVEVGLNRRPIVEPEDEFFIKDPGRY-VRVPANALRHRH 220 (640)
T ss_pred eecCCChHHHHHHHHHHHHHHHHhCCCEEEEEEeeeeccceeEEeccccCCCCccccccccCCccce-eecCcccchhhH
Confidence 6899999999999999997 47899999999988876433 21 111111 11 122322 2211
Q ss_pred ----ccc----cccCCCccccc---CCCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhCCC
Q psy7291 61 ----GEA----FYHLDAPVIRV---TGKDITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKTN 129 (158)
Q Consensus 61 ----~~~----~~~~~~~~~~~---~g~~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~~ 129 (158)
.+| ......+.++. +..++-||+.|..+..+.||++.| |++..++.+.+.+|||.+.+.+++++.+
T Consensus 221 ~~l~~k~~a~~~~~~~~~~n~v~~~~~~~lGII~~G~ay~yVkeAl~~l---gl~~~~lklg~~~Plp~~~i~~F~~g~~ 297 (640)
T COG4231 221 RKLLEKWEAAEEFINANPLNRVEGSDDAKLGIIASGIAYNYVKEALEDL---GLDDELLKLGTPYPLPEQLIENFLKGLE 297 (640)
T ss_pred HHHHHHHHHHHHHHhhCcccccccCCCCceEEEecCccHHHHHHHHHHc---CCCceeEEecCCcCCCHHHHHHHHhcCc
Confidence 011 11222233332 137899999999999999998877 8889999999999999999999999999
Q ss_pred eEEEEeCCcCCCChHHHHHHHHHcCCC
Q psy7291 130 YLISVEGGWPQCGIGSEISARIMEIPY 156 (158)
Q Consensus 130 ~vvvvEe~~~~GG~g~~i~~~l~~~~~ 156 (158)
+|+||||..+ =+-.++.+.+.+++.
T Consensus 298 ~vlVVEE~~P--~iE~qv~~~l~~~g~ 322 (640)
T COG4231 298 RVLVVEEGEP--FIEEQVKALLYDAGL 322 (640)
T ss_pred EEEEEecCCc--hHHHHHHHHHHhcCC
Confidence 9999999997 356778888876654
No 38
>PRK08367 porA pyruvate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=99.37 E-value=4.6e-12 Score=104.78 Aligned_cols=84 Identities=19% Similarity=0.210 Sum_probs=74.8
Q ss_pred cccccCCCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhCCCeEEEEeCCcCC---CChHHH
Q psy7291 70 PVIRVTGKDITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKTNYLISVEGGWPQ---CGIGSE 146 (158)
Q Consensus 70 ~~~~~~g~~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~~~vvvvEe~~~~---GG~g~~ 146 (158)
+.+..++.|++||++|+....+.+|++.|+++|++++++++++++|||.+.|.++++++++|+|+|.+... |.+..+
T Consensus 255 e~yg~eDAe~viV~~GS~~~~~keav~~LR~~G~kVGllri~~~rPFP~~~i~~~l~~~k~ViVvE~n~s~g~~g~l~~d 334 (394)
T PRK08367 255 EEYRTEDAEIIFVTMGSLAGTLKEFVDKLREEGYKVGAAKLTVYRPFPVEEIRALAKKAKVLAFLEKNISFGLGGAVFAD 334 (394)
T ss_pred EEeCCCCCCEEEEEeCccHHHHHHHHHHHHhcCCcceeEEEeEecCCCHHHHHHHHccCCEEEEEeCCCCCCCCCcHHHH
Confidence 33445578999999999999999999999999999999999999999999999999999999999999753 456788
Q ss_pred HHHHHHc
Q psy7291 147 ISARIME 153 (158)
Q Consensus 147 i~~~l~~ 153 (158)
|.+.|..
T Consensus 335 V~aal~~ 341 (394)
T PRK08367 335 ASAALVN 341 (394)
T ss_pred HHHHHhc
Confidence 8888854
No 39
>TIGR00239 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 component. The E1 ortholog from Corynebacterium glutamicum is unusual in having an N-terminal extension that resembles the dihydrolipoamide succinyltransferase (E2) component of 2-oxoglutarate dehydrogenase.
Probab=99.33 E-value=3e-11 Score=108.12 Aligned_cols=139 Identities=15% Similarity=0.205 Sum_probs=91.8
Q ss_pred CcccCCHHHHHHHHH-HHHhC-CCcEEEEecccccccccCCC--CcccCCCcccccCceEEEeeccccccCCCcccccCC
Q psy7291 1 VVSPYNSEDAKGLLK-AAIRD-PDPVVFLENELLYGVQYPMG--DEALSKDFVLPIGKAKVEKQGEAFYHLDAPVIRVTG 76 (158)
Q Consensus 1 V~~P~d~~e~~~~l~-~a~~~-~~P~~iR~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~vl~~~~~~~~~~~~~~~~~g 76 (158)
|+.|+++.++..+|+ +|++. +.|++|.++|.+|+.+..+. .++....+...++.. .+... ....++
T Consensus 743 Vv~pstpad~~~lLrrqa~r~~~~Pvi~~~~K~L~r~~~a~S~~~e~~~~~f~~~i~~~--~~~~~--------~~~~~~ 812 (929)
T TIGR00239 743 VCVPTTPAQVFHILRRQALRGMRRPLVVMSPKSLLRHPLAVSSLEELAEGTFQPVIGEI--EESGL--------SLDPEG 812 (929)
T ss_pred EEecCCHHHHHHHHHHHHHhCCCCCEEEeccHhhhcCccccCccccCCCCCcccccccc--ccccc--------ccCccC
Confidence 578999999999999 79986 89999999999986543111 011111222223211 11100 000013
Q ss_pred CcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhCCC---eEEEEeCCcCCCChHHHHHHHH
Q psy7291 77 KDITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKTN---YLISVEGGWPQCGIGSEISARI 151 (158)
Q Consensus 77 ~~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~~---~vvvvEe~~~~GG~g~~i~~~l 151 (158)
-+.+|+++| ++...+++ ++++.+|+++.||++++|+|||.+.|.+.++++. .++.+.|...+.|-=..|...|
T Consensus 813 v~~vv~~sg-~v~~~l~~-~~~~~~~~~v~iirle~L~Pf~~~~i~~sl~k~~~~~~~vw~qEep~n~Gaw~~v~~rl 888 (929)
T TIGR00239 813 VKRLVLCSG-KVYYDLHE-QRRKNGQKDVAIVRIEQLYPFPHKAVKEVLQQYPNLKEIVWCQEEPLNMGAWYYSQPHL 888 (929)
T ss_pred CcEEEEECc-hHHHHHHH-HHHhcCCCCEEEEEeeeeCCCCHHHHHHHHHhcCCCCeEEEEeccCCCCCCHHHHHHHH
Confidence 455666666 66666666 6677779999999999999999999999999885 6777776666666444444433
No 40
>COG0021 TktA Transketolase [Carbohydrate transport and metabolism]
Probab=99.17 E-value=4.1e-10 Score=96.39 Aligned_cols=127 Identities=20% Similarity=0.275 Sum_probs=91.9
Q ss_pred CcccCCHHHHHHHHHHHHhC-CCcEEEEecccccccccCCCCcccCCCcccccCceEEEeeccccccCCCcccccCCCcE
Q psy7291 1 VVSPYNSEDAKGLLKAAIRD-PDPVVFLENELLYGVQYPMGDEALSKDFVLPIGKAKVEKQGEAFYHLDAPVIRVTGKDI 79 (158)
Q Consensus 1 V~~P~d~~e~~~~l~~a~~~-~~P~~iR~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vl~~~~~~~~~~~~~~~~~g~~~ 79 (158)
|+.|+|..|...+++.|++. ++|+++.++|... |.-+. .........++++++.. .++.|+
T Consensus 490 V~RPaD~~Et~~aw~~Al~~~~gPt~LiltRQnl----p~l~~---t~~~~~~kGaYvl~~~~-----------~~~pd~ 551 (663)
T COG0021 490 VIRPADANETAAAWKYALERKDGPTALILTRQNL----PVLER---TDLEGVAKGAYVLKDSG-----------GEDPDV 551 (663)
T ss_pred eEecCChHHHHHHHHHHHhcCCCCeEEEEecCCC----CccCC---CccccccCccEEEeecC-----------CCCCCE
Confidence 68999999999999999985 8999999865433 32111 11122233466777620 014799
Q ss_pred EEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHH--HHH-HHhC-CCeEEEEeCCcCCCChHHH
Q psy7291 80 TIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIET--ITK-SVMK-TNYLISVEGGWPQCGIGSE 146 (158)
Q Consensus 80 ~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~--l~~-~~~~-~~~vvvvEe~~~~GG~g~~ 146 (158)
+||++||.+..|++|++.|+++|+++.||++++...|+++. .++ .+.. ....+.+|-+.. .|+...
T Consensus 552 iliAtGSEV~lAv~Aa~~L~~~~~~vrVVS~P~~~~fe~Q~~~Y~~~vL~~~v~~rvaiEa~~~-~~W~ky 621 (663)
T COG0021 552 ILIATGSEVELAVEAAKELEAEGIKVRVVSMPSFELFEKQDEEYRESVLPGAVTARVAIEAGSA-LGWYKY 621 (663)
T ss_pred EEEecccHHHHHHHHHHHHHhcCCceEEEeccchHHHHcCCHHHHHhhccCCccceEEEEeccc-cchhhh
Confidence 99999999999999999999888999999999999999864 333 3332 234688998774 555443
No 41
>PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=99.05 E-value=1.2e-09 Score=100.05 Aligned_cols=151 Identities=15% Similarity=0.083 Sum_probs=103.6
Q ss_pred CcccCCHHHHHHHHHHHHh----CCCcEEEEecccccccccCCC--Cc-c---cCCCcccccC----ceEEE--------
Q psy7291 1 VVSPYNSEDAKGLLKAAIR----DPDPVVFLENELLYGVQYPMG--DE-A---LSKDFVLPIG----KAKVE-------- 58 (158)
Q Consensus 1 V~~P~d~~e~~~~l~~a~~----~~~P~~iR~~~~~~~~~~~~~--~~-~---~~~~~~~~~g----~~~vl-------- 58 (158)
|+.|+|+||++++..++++ ++.||.+|.+++..|.+..+. +. . .+..+..++| +|...
T Consensus 169 vl~Ps~~qE~~d~~~~a~~lSr~~~~pV~lr~~t~v~h~~~~V~~~~~~~~~~~~~~f~~~~~~~~~r~~~~p~~~~~~~ 248 (1159)
T PRK13030 169 VLNPANVQEYLDFGLYGWALSRYSGAWVGFKAISETVESGSTVDLDPDRTRWPAPEDFTPPAGGLHNRWPDLPSLAIEAR 248 (1159)
T ss_pred eeCCCCHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeeeeeEEcCCCcccCCCccccCCCcccccccCCCCcHHHHHHH
Confidence 6899999999999999997 478999999988887654332 10 0 1111222331 22211
Q ss_pred -ee--cc--c-cccCCCcccc--cCCCcEEEEEechhHHHHHHHHHHHHhCC-----CcEEEEEeccccCCCHHHHHHHH
Q psy7291 59 -KQ--GE--A-FYHLDAPVIR--VTGKDITIVGHSKAVETALDAAKILAGQG-----IDAEVINLRSLRPLDIETITKSV 125 (158)
Q Consensus 59 -~~--~~--~-~~~~~~~~~~--~~g~~~~ii~~G~~~~~a~ea~~~L~~~g-----i~~~vi~~~~l~Pld~~~l~~~~ 125 (158)
.+ .. . +..+.++... ..+.++.||++|.....+.||++.|...+ +.+.++++.+.+|||.+.+.+++
T Consensus 249 ~~~rl~~~~~~~~~~~ln~~~~~~~~~~iGIItsG~ay~~v~EAL~~Lgl~~~~~~~lgirilKvgm~~PL~~~~i~~F~ 328 (1159)
T PRK13030 249 LAAKLPAVRAFARANSIDRWVAPSPDARVGIVTCGKAHLDLMEALRRLGLDDADLRAAGIRIYKVGLSWPLEPTRLREFA 328 (1159)
T ss_pred HHHHHHHHHHHHHhcCCCceeccCCCCCEEEEEeCccHHHHHHHHHHcCCCcccccccCccEEEeCCccCCCHHHHHHHH
Confidence 00 00 1 1123444333 22467999999999999999999885432 24789999999999999999999
Q ss_pred hCCCeEEEEeCCcCCCChHHHHHHHHHc
Q psy7291 126 MKTNYLISVEGGWPQCGIGSEISARIME 153 (158)
Q Consensus 126 ~~~~~vvvvEe~~~~GG~g~~i~~~l~~ 153 (158)
++++.|+||||... =+-.++.+.|.+
T Consensus 329 ~g~d~VlVVEE~~p--~iE~Qlk~~l~~ 354 (1159)
T PRK13030 329 DGLEEILVIEEKRP--VIEQQIKDYLYN 354 (1159)
T ss_pred hcCCEEEEEeCCch--HHHHHHHHHHHh
Confidence 99999999999985 234455555543
No 42
>PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated
Probab=99.02 E-value=3.1e-09 Score=97.16 Aligned_cols=153 Identities=14% Similarity=0.087 Sum_probs=106.4
Q ss_pred CcccCCHHHHHHHHHHHHh----CCCcEEEEecccccccccCCC--C-c--c-cCCCcccccC----ceEEE--------
Q psy7291 1 VVSPYNSEDAKGLLKAAIR----DPDPVVFLENELLYGVQYPMG--D-E--A-LSKDFVLPIG----KAKVE-------- 58 (158)
Q Consensus 1 V~~P~d~~e~~~~l~~a~~----~~~P~~iR~~~~~~~~~~~~~--~-~--~-~~~~~~~~~g----~~~vl-------- 58 (158)
|+.|+|+||++++..++++ ++.||.+|.+++..+.+..+. + . . .+..+..+.+ +|...
T Consensus 177 vl~Ps~~qE~~d~~~~g~~lSr~~g~pV~lr~~t~v~h~~~~V~~~~~~~~~~~~~~f~~~~~g~~~r~~~~p~~~~~~~ 256 (1165)
T PRK09193 177 VLFPANVQEILDYGLHGWAMSRYSGLWVGMKTVTDVVESSASVDVDPDRVQIVLPEDFEMPPGGLNIRWPDPPLEQEARL 256 (1165)
T ss_pred eeCCCCHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeeeeeEEcCCCcccCCCcccccCCcccccccCCCCcHHHHHHH
Confidence 6899999999999999987 478999999988877654331 1 1 0 1112333444 33211
Q ss_pred -eec----cc-cccCCCccccc--CCCcEEEEEechhHHHHHHHHHHHHhC-----CCcEEEEEeccccCCCHHHHHHHH
Q psy7291 59 -KQG----EA-FYHLDAPVIRV--TGKDITIVGHSKAVETALDAAKILAGQ-----GIDAEVINLRSLRPLDIETITKSV 125 (158)
Q Consensus 59 -~~~----~~-~~~~~~~~~~~--~g~~~~ii~~G~~~~~a~ea~~~L~~~-----gi~~~vi~~~~l~Pld~~~l~~~~ 125 (158)
.+. .. +..+.++.... .+.++.||+.|..+..+.||++.|... .+.++++++.+.||||.+.+.+++
T Consensus 257 ~~~rl~a~~a~a~~n~ln~~~~~~~~~~iGIItsG~~y~~v~eal~~lg~~~~~~~~~gi~ilKvgm~~PL~~~~i~~Fa 336 (1165)
T PRK09193 257 LDYKLYAALAYARANKLDRVVIDSPNARLGIVAAGKAYLDVRQALRDLGLDEETAARLGIRLYKVGMVWPLEPQGVRAFA 336 (1165)
T ss_pred HHHHHHHHHHHHHhCCCCeeecCCCCCCEEEEecCccHHHHHHHHHHcCCChhhhcccCCCEEEeCCCCCCCHHHHHHHH
Confidence 000 01 11234444331 146899999999999999999887221 123899999999999999999999
Q ss_pred hCCCeEEEEeCCcCCCChHHHHHHHHHcCC
Q psy7291 126 MKTNYLISVEGGWPQCGIGSEISARIMEIP 155 (158)
Q Consensus 126 ~~~~~vvvvEe~~~~GG~g~~i~~~l~~~~ 155 (158)
++.+.|+||||..+ =+-++|.+.+.+.+
T Consensus 337 ~g~~~vlVVEE~~p--~iE~qlk~~l~~~~ 364 (1165)
T PRK09193 337 EGLDEILVVEEKRQ--IIEYQLKEELYNWP 364 (1165)
T ss_pred hcCCEEEEEecCch--HHHHHHHHHHhhcc
Confidence 99999999999885 35567777765543
No 43
>PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=98.97 E-value=9e-09 Score=94.18 Aligned_cols=153 Identities=15% Similarity=0.108 Sum_probs=105.5
Q ss_pred CcccCCHHHHHHHHHHHHh----CCCcEEEEecccccccccCCC--Ccc----cCCCcccccC----ceEEE--------
Q psy7291 1 VVSPYNSEDAKGLLKAAIR----DPDPVVFLENELLYGVQYPMG--DEA----LSKDFVLPIG----KAKVE-------- 58 (158)
Q Consensus 1 V~~P~d~~e~~~~l~~a~~----~~~P~~iR~~~~~~~~~~~~~--~~~----~~~~~~~~~g----~~~vl-------- 58 (158)
|+.|+|.||+.++..++++ ++-||.+|.+++..+.+..+. +.. .+..+..++| +|...
T Consensus 180 vl~Ps~~qE~~d~~~~a~~lSr~~g~~V~lr~~t~v~~s~~~V~~~~~r~~~~~p~~f~~~~~g~~~r~~~~p~~~e~~~ 259 (1186)
T PRK13029 180 VLYPASVQDYLDYGLHGWAMSRYSGLWVGMKCVTEVVESTASVDLDPDRVDIVLPDDFVLPPGGLHIRWPDDPLAQEERM 259 (1186)
T ss_pred eeCCCCHHHHHHHHHHHHHHHHHhCCCEEEEEeeeeeecceeeecCCcccccCCcccccCCccccccccCCCcHHHHHHH
Confidence 6899999999999999987 478999999988877654331 110 1112322332 12111
Q ss_pred -eec--c--c-cccCCCcccc--cCCCcEEEEEechhHHHHHHHHHHHHhC-----CCcEEEEEeccccCCCHHHHHHHH
Q psy7291 59 -KQG--E--A-FYHLDAPVIR--VTGKDITIVGHSKAVETALDAAKILAGQ-----GIDAEVINLRSLRPLDIETITKSV 125 (158)
Q Consensus 59 -~~~--~--~-~~~~~~~~~~--~~g~~~~ii~~G~~~~~a~ea~~~L~~~-----gi~~~vi~~~~l~Pld~~~l~~~~ 125 (158)
.+. . . +..+.++... ..+.++.||+.|..+..+.||+++|... .+.++++++.+.||||.+.+.+++
T Consensus 260 ~~~kl~a~~a~a~~n~ln~~~~~~~~~~~GIItsG~~y~~v~eAl~~lgl~~~~~~~~gi~ilKvgm~~PL~~~~i~~Fa 339 (1186)
T PRK13029 260 LEFKWYAALAYVRANRLNRLVIDGPNPRLGIIAAGKAYLDVRQALRDLGLDDATCAALGIRLLKVGCVWPLDPQSVREFA 339 (1186)
T ss_pred HHHHHHHHHHHHHhCCCCEEeccCCCCCEEEEecCccHHHHHHHHHHcCCChhhccccCCCEEEeCCCCCCCHHHHHHHH
Confidence 000 0 1 1123444333 2247899999999999999999887221 123899999999999999999999
Q ss_pred hCCCeEEEEeCCcCCCChHHHHHHHHHcCC
Q psy7291 126 MKTNYLISVEGGWPQCGIGSEISARIMEIP 155 (158)
Q Consensus 126 ~~~~~vvvvEe~~~~GG~g~~i~~~l~~~~ 155 (158)
++.+.|+||||..+ =+-++|.+.+.+.+
T Consensus 340 ~g~d~vlVVEE~~p--~iE~qlk~~l~~~~ 367 (1186)
T PRK13029 340 QGLEEVLVVEEKRA--VIEYQLKEELYNWR 367 (1186)
T ss_pred hcCCEEEEEecCch--HHHHHHHHHHhhcc
Confidence 99999999999885 35667777775543
No 44
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=98.91 E-value=9.8e-09 Score=94.79 Aligned_cols=86 Identities=13% Similarity=0.195 Sum_probs=74.4
Q ss_pred CcccccCCCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHH-hCCCeEEEEeCCcCCC----Ch
Q psy7291 69 APVIRVTGKDITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSV-MKTNYLISVEGGWPQC----GI 143 (158)
Q Consensus 69 ~~~~~~~g~~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~-~~~~~vvvvEe~~~~G----G~ 143 (158)
++.+..++.+.+||++|+....+.+|++.|+++|+++++|+++.++|||.+.|.+.+ ++.++|+|+|.+...| -+
T Consensus 257 ~e~yg~~dAe~ViV~~GS~~~~~~eav~~Lr~~G~kVGli~vr~~rPFp~e~l~~aLp~svK~I~Vler~~~~g~~g~pL 336 (1165)
T TIGR02176 257 FDYYGAPDAERVIIAMGSVAETIEETVDYLNAKGEKVGLLKVRLYRPFSAETFFAALPKSVKRIAVLDRTKEPGAAGEPL 336 (1165)
T ss_pred ceecCCCCCCEEEEEeCCCHHHHHHHHHHHHhcCCceeEEEEeEeCCCCHHHHHHHHHhcCCEEEEEECCCCCCcccChH
Confidence 455556678999999999999999999999999999999999999999999999977 5889999999996544 36
Q ss_pred HHHHHHHHHcC
Q psy7291 144 GSEISARIMEI 154 (158)
Q Consensus 144 g~~i~~~l~~~ 154 (158)
..+|.+.|...
T Consensus 337 ~~DV~~al~~~ 347 (1165)
T TIGR02176 337 YLDVVSAFYEM 347 (1165)
T ss_pred HHHHHHHHhhc
Confidence 78888888653
No 45
>COG0674 PorA Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit [Energy production and conversion]
Probab=98.60 E-value=2.4e-07 Score=76.24 Aligned_cols=72 Identities=22% Similarity=0.347 Sum_probs=57.4
Q ss_pred CCCcEEEEEechhHHHHHHHHHH-HHhCCCcEEEEEeccccCCCHHHHHHHHhCCCeEEEEeCCcCCCChHHH
Q psy7291 75 TGKDITIVGHSKAVETALDAAKI-LAGQGIDAEVINLRSLRPLDIETITKSVMKTNYLISVEGGWPQCGIGSE 146 (158)
Q Consensus 75 ~g~~~~ii~~G~~~~~a~ea~~~-L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~~~vvvvEe~~~~GG~g~~ 146 (158)
++.+++||+||+....+.+++.. ++++|++++++++++++|||.+.+.+++++.+.+.|++-....||+++-
T Consensus 255 ~DAe~viV~~Gss~~~~~~a~~~~~~~~g~kvg~l~vr~~rPFp~~~i~~~l~~~~~~~Vl~~e~~~g~~~~~ 327 (365)
T COG0674 255 EDAEIVIVAMGSSKGSTAEAVVDLLRDKGEKVGLLKVRTLRPFPAEEIREVLPKTNAVVVLDVEISLGGLAEP 327 (365)
T ss_pred CCcCEEEEEeccchHhHHHHHHHHHHhcCceEEEEEEEEeCCCCHHHHHHHhcccceeEEEEEccCCccchhh
Confidence 57899999999777777777655 5588999999999999999999999999987756666655555665433
No 46
>PRK05261 putative phosphoketolase; Provisional
Probab=98.24 E-value=1.6e-05 Score=70.86 Aligned_cols=121 Identities=17% Similarity=0.153 Sum_probs=78.2
Q ss_pred CcccCCHHHHHHHHHHHHhC-CCcEEEEecccccccccCCCCcccCCCcccccCceEEEeeccccccCCCcccccCCCcE
Q psy7291 1 VVSPYNSEDAKGLLKAAIRD-PDPVVFLENELLYGVQYPMGDEALSKDFVLPIGKAKVEKQGEAFYHLDAPVIRVTGKDI 79 (158)
Q Consensus 1 V~~P~d~~e~~~~l~~a~~~-~~P~~iR~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vl~~~~~~~~~~~~~~~~~g~~~ 79 (158)
|+.|+|+.|+..+++.|++. ++|.+|..+|+..+.-... +. ....+..| +.++..++. .. ..+.|+
T Consensus 550 V~rPaDaNe~laa~~~al~s~~~p~~IvlsRQ~lp~~~~~-~~---a~~~~~kG-ayi~~~a~~----~~----~~~pDv 616 (785)
T PRK05261 550 VYLPPDANTLLAVADHCLRSRNYINVIVAGKQPRPQWLSM-DE---ARKHCTKG-LGIWDWASN----DD----GEEPDV 616 (785)
T ss_pred EEeCCCHHHHHHHHHHHHHhCCCCEEEEEeCCCCcccCCh-HH---HHHhccCc-eEEEEeccC----CC----CCCCCE
Confidence 57899999999999999975 7899998765433211000 00 01123344 334442100 00 013699
Q ss_pred EEEEechhHHH-HHHHHHHHHhC--CCcEEEEEeccc--------cC--CCHHHHHHHHhCCCeEEEE
Q psy7291 80 TIVGHSKAVET-ALDAAKILAGQ--GIDAEVINLRSL--------RP--LDIETITKSVMKTNYLISV 134 (158)
Q Consensus 80 ~ii~~G~~~~~-a~ea~~~L~~~--gi~~~vi~~~~l--------~P--ld~~~l~~~~~~~~~vvvv 134 (158)
+|+++|+.... |++|++.|+++ |+++.||++.-+ .| ++.+.+..+....+.|++.
T Consensus 617 vL~atGsev~leAlaAa~~L~~~~pgikvRVVSv~dLf~lQ~~~~~~~~lsd~~f~~lFt~d~pvif~ 684 (785)
T PRK05261 617 VLACAGDVPTLETLAAADLLREHFPDLKIRVVNVVDLMKLQPPSEHPHGLSDREFDALFTTDKPVIFA 684 (785)
T ss_pred EEEEeCcHhhHHHHHHHHHHHhhCCCCCEEEEEechhhhhCCcccCCCCCCHHHHHHhCCCCCcEEEE
Confidence 99999999998 99999999999 999999998432 11 3445566666555555544
No 47
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed
Probab=96.66 E-value=0.014 Score=53.48 Aligned_cols=129 Identities=12% Similarity=0.101 Sum_probs=86.7
Q ss_pred CcccCCHHHHHHHHH-HHHh-CCCcEEEEecccccccccCCCCcccCCCcccccCceEEEeeccccccCCCcccccCCCc
Q psy7291 1 VVSPYNSEDAKGLLK-AAIR-DPDPVVFLENELLYGVQYPMGDEALSKDFVLPIGKAKVEKQGEAFYHLDAPVIRVTGKD 78 (158)
Q Consensus 1 V~~P~d~~e~~~~l~-~a~~-~~~P~~iR~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vl~~~~~~~~~~~~~~~~~g~~ 78 (158)
|..|+.+..--.+|+ +|+. ...|.++..||.+.+.+..+. ....|.-|+++-+-.+.. ..+ ...-+
T Consensus 1044 Va~psTPA~yFHLLRrqa~~~~~rPLvVfTPKSmLR~KaA~S-----~vedFT~g~F~pVi~D~~----~~~---~~~V~ 1111 (1228)
T PRK12270 1044 VAQPSTPANYFHLLRRQALSGPRRPLVVFTPKSMLRLKAAVS-----DVEDFTEGKFRPVIDDPT----VDD---GAKVR 1111 (1228)
T ss_pred EEccCChHHHHHHHHHHhhcCCCCCeEEEChHHhhcchhhcC-----CHHHhccCCceecCCCCC----CCC---cccee
Confidence 467999999989998 4554 478999999998776543221 223445566654432100 000 00236
Q ss_pred EEEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhCC----CeEEEEeCCcCCCCh
Q psy7291 79 ITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKT----NYLISVEGGWPQCGI 143 (158)
Q Consensus 79 ~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~----~~vvvvEe~~~~GG~ 143 (158)
-+|+++|..+....+..+ +...-++.++.+-.|+|||.+.|.+.+.++ +.+++=||-.-.|-|
T Consensus 1112 RVlLcSGKvYYdL~a~R~--k~~~~d~AIvRvEQLyP~p~~~l~~~l~~ypna~e~~wvQeEP~NqGaw 1178 (1228)
T PRK12270 1112 RVLLCSGKLYYDLAARRE--KDGRDDTAIVRVEQLYPLPRAELREALARYPNATEVVWVQEEPANQGAW 1178 (1228)
T ss_pred EEEEEcchhHHHHHHHHH--hcCCCceEEEEhhhhCCCCHHHHHHHHHhCCCcceeEEeccCcccCCCc
Confidence 789999999887665433 233357999999999999999999998876 456777876656665
No 48
>TIGR00759 aceE pyruvate dehydrogenase E1 component, homodimeric type. WARNING: This family is classified as subfamily rather than equivalog because it includes a counterexample from Pseudomonas putida, MdeB, that is active as an E1 component of an alpha-ketoglutarate dehydrogenase complex rather than a pyruvate dehydrogase complex. The second pyruvate dehydrogenase complex E1 protein from Alcaligenes eutrophus, PdhE, complements an aceE mutant of E. coli but is not part of a pyruvate dehydrogenase complex operon, is more similar to the Pseudomonas putida MdeB than to E. coli AceE, and may have also have a different primary specificity.
Probab=95.93 E-value=0.036 Score=50.31 Aligned_cols=104 Identities=14% Similarity=0.230 Sum_probs=69.0
Q ss_pred cccCCHHHHHHHHHHHHh----CCCcEEEEecc--cccccccCCCCcccCCCcccccCceEEEeeccccccCCCcccccC
Q psy7291 2 VSPYNSEDAKGLLKAAIR----DPDPVVFLENE--LLYGVQYPMGDEALSKDFVLPIGKAKVEKQGEAFYHLDAPVIRVT 75 (158)
Q Consensus 2 ~~P~d~~e~~~~l~~a~~----~~~P~~iR~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~vl~~~~~~~~~~~~~~~~~ 75 (158)
+.|+...|+..++++.++ .+.-+|.|++. ..|... .-+.- ....+..| ..++++... ...
T Consensus 655 ydPafa~Ela~i~~~g~~rm~~~~~~v~yylt~~ne~~~qp--~~p~~--~~egIlkG-~Y~l~~~~~---------~~~ 720 (885)
T TIGR00759 655 YDPAFAYEVAVIMEDGLRRMYGEQEDVFYYVTVMNENYVQP--PMPEG--AEEGILKG-LYRFETSTE---------EKA 720 (885)
T ss_pred ecCchHHHHHHHHHHHHHHHhhCCCCEEEEEEecCCCCCCC--CCCcc--hHHhHHhC-ceecccCCC---------CCC
Confidence 579999999999888876 35688888775 333221 10000 01112223 334443100 000
Q ss_pred CCcEEEEEechhHHHHHHHHHHHHhC-CCcEEEEEeccccCCCHH
Q psy7291 76 GKDITIVGHSKAVETALDAAKILAGQ-GIDAEVINLRSLRPLDIE 119 (158)
Q Consensus 76 g~~~~ii~~G~~~~~a~ea~~~L~~~-gi~~~vi~~~~l~Pld~~ 119 (158)
+.++.|++.|+++..+++|++.|.++ |+.++|+++.+..=|..+
T Consensus 721 ~~~VqLlgSG~il~evl~Aa~lL~~~~gV~adVwSvTS~~eL~Rd 765 (885)
T TIGR00759 721 KGHVQLLGSGAIMRAVIEAAQLLAADWGVASDVWSVTSFTELARD 765 (885)
T ss_pred CccEEEEeccHHHHHHHHHHHHHHHHHCCCCcEEECCCHHHHHHh
Confidence 25799999999999999999999986 999999999887666555
No 49
>KOG0450|consensus
Probab=94.72 E-value=0.18 Score=44.95 Aligned_cols=131 Identities=11% Similarity=0.041 Sum_probs=83.9
Q ss_pred cccCCHHHHHHHHHHHHh--CCCcEEEEecccccccccCCCCcccCCCccccc--CceEEEeeccccccCCCcccccCCC
Q psy7291 2 VSPYNSEDAKGLLKAAIR--DPDPVVFLENELLYGVQYPMGDEALSKDFVLPI--GKAKVEKQGEAFYHLDAPVIRVTGK 77 (158)
Q Consensus 2 ~~P~d~~e~~~~l~~a~~--~~~P~~iR~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~vl~~~~~~~~~~~~~~~~~g~ 77 (158)
+.++.|.....+|+.-+. ...|.+|..+|.+.+....+.. -..+.- |-.+++.+... .....++-
T Consensus 826 vn~tTPaNyfHvLRRQi~~~FRKPliif~pKsLLRHp~arS~-----~~ef~~g~~fq~vi~e~g~------~~~~pe~v 894 (1017)
T KOG0450|consen 826 VNCTTPANYFHVLRRQIHRPFRKPLIIFTPKSLLRHPEARSS-----FSEFDEGTGFQRVIPEDGK------AAQNPENV 894 (1017)
T ss_pred EecCChHHHHHHHHHHhhhcccCceEEeccHHhhcCccccCC-----HHHhccCCCCceecccccc------ccCChhhc
Confidence 456777778888886664 5899999988877643211110 011111 22233333100 00001155
Q ss_pred cEEEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhCCC---eEEEEeCCcCCCChH
Q psy7291 78 DITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKTN---YLISVEGGWPQCGIG 144 (158)
Q Consensus 78 ~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~~---~vvvvEe~~~~GG~g 144 (158)
+-+|+++|..+....++.+.... --++.+..+-.|.|||.+.+++-++++. -++.=|||.-.|++.
T Consensus 895 krlv~csGkVyydL~k~Rk~~~~-~~~vAi~RvEQl~PFp~dli~~e~~~YpnaEivWcQEE~~NmG~w~ 963 (1017)
T KOG0450|consen 895 KRLVFCSGKVYYDLTKERKEVGL-EGDVAITRVEQLSPFPFDLIQQELNKYPNAEIVWCQEEHKNMGAWD 963 (1017)
T ss_pred eEEEEecceEehhhhHHHHhcCc-ccceeEEEeeccCCCcHHHHHHHHHhCCCceeeehhhhhcccCchh
Confidence 78999999988776666554432 2368999999999999999999888764 577779998778774
No 50
>KOG0451|consensus
Probab=92.39 E-value=0.77 Score=40.16 Aligned_cols=129 Identities=16% Similarity=0.192 Sum_probs=82.4
Q ss_pred CcccCCHHHHHHHHHHHH-h-CCCcEEEEecccccccccCCCCcccCCCcccccCce--EEEeeccccccCCCcccccCC
Q psy7291 1 VVSPYNSEDAKGLLKAAI-R-DPDPVVFLENELLYGVQYPMGDEALSKDFVLPIGKA--KVEKQGEAFYHLDAPVIRVTG 76 (158)
Q Consensus 1 V~~P~d~~e~~~~l~~a~-~-~~~P~~iR~~~~~~~~~~~~~~~~~~~~~~~~~g~~--~vl~~~~~~~~~~~~~~~~~g 76 (158)
|+-|..+.+...+|+.-+ . +..|.++-.||.+.+. |.... -...+.+|.. .|+.+. . .. .+.
T Consensus 731 vvnPTTpAQYfHlLRRQ~vrNfRKPLiVv~PK~LLRl--PaA~S---T~~ef~PGTtf~nVigd~-~----~~----p~k 796 (913)
T KOG0451|consen 731 VVNPTTPAQYFHLLRRQLVRNFRKPLIVVAPKTLLRL--PAATS---THEEFQPGTTFHNVIGDT-I----AK----PEK 796 (913)
T ss_pred EeCCCCHHHHHHHHHHHHHHhccCceEEechHHHhhC--cchhh---hHhhcCCCcccccccccc-c----cC----hhH
Confidence 467899999999998544 3 5889998777655432 22110 0111222211 122110 0 00 013
Q ss_pred CcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhCCC----eEEEEeCCcCCCChH
Q psy7291 77 KDITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKTN----YLISVEGGWPQCGIG 144 (158)
Q Consensus 77 ~~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~~----~vvvvEe~~~~GG~g 144 (158)
-+.+|++.|.-.....+..+.+..+. .+.++.+-.+-|||-+.|...+++++ .|+.=||+.-.|-++
T Consensus 797 vkkvifcSGKH~y~l~k~Re~rgakd-~~AI~RvE~LCPFPi~~LQa~l~kY~~vqdfvWSQEEprNmGaWs 867 (913)
T KOG0451|consen 797 VKKVIFCSGKHYYTLAKEREKRGAKD-TVAILRVESLCPFPIQELQAQLAKYGNVQDFVWSQEEPRNMGAWS 867 (913)
T ss_pred heEEEEecCcchhhHHHHHHhccccc-ceeeEehhhcCCCchHHHHHHHHhcCChhhhcccccccccCCcce
Confidence 46788999988877766666554332 38999999999999999988888764 688999998777653
No 51
>PF09363 XFP_C: XFP C-terminal domain; InterPro: IPR018969 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; GO: 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=91.92 E-value=1.5 Score=33.30 Aligned_cols=59 Identities=22% Similarity=0.291 Sum_probs=40.9
Q ss_pred CCcEEEEEech-hHHHHHHHHHHHHhC--CCcEEEEEeccc--------cC--CCHHHHHHHHhCCCeEEEE
Q psy7291 76 GKDITIVGHSK-AVETALDAAKILAGQ--GIDAEVINLRSL--------RP--LDIETITKSVMKTNYLISV 134 (158)
Q Consensus 76 g~~~~ii~~G~-~~~~a~ea~~~L~~~--gi~~~vi~~~~l--------~P--ld~~~l~~~~~~~~~vvvv 134 (158)
..|+++.+.|. .+.+++.|+..|++. ++++.+|++--| .| |+.+.+..+....+.|++.
T Consensus 34 ePDVVlA~aGd~pT~E~lAA~~lLr~~~P~lkiRvVNVvDLm~L~~~~~hPhglsd~~Fd~lFT~DkPViFa 105 (203)
T PF09363_consen 34 EPDVVLACAGDVPTLEVLAAASLLREHFPELKIRVVNVVDLMKLQPPSEHPHGLSDEEFDALFTKDKPVIFA 105 (203)
T ss_dssp T-SEEEEEESHHHHHHHHHHHHHHHHT--T--EEEEEESBGGGGS-TTT-TTS--HHHHHHHH-SSS-EEEE
T ss_pred CCCEEEEecCchhhHHHHHHHHHHHHhccCceEEEEEEeEccccCCCCCCCCcCCHHHHHHhcCCCCCEEEE
Confidence 57999999997 557899999999988 788888766544 23 6677888888777777764
No 52
>COG0567 SucA 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes [Energy production and conversion]
Probab=90.62 E-value=1.9 Score=39.61 Aligned_cols=127 Identities=16% Similarity=0.150 Sum_probs=80.9
Q ss_pred CcccCCHHHHHHHHHHHH-h-CCCcEEEEecccccccccCCCCcccCCCcccccCceE-EEeeccccccCCCcccccCCC
Q psy7291 1 VVSPYNSEDAKGLLKAAI-R-DPDPVVFLENELLYGVQYPMGDEALSKDFVLPIGKAK-VEKQGEAFYHLDAPVIRVTGK 77 (158)
Q Consensus 1 V~~P~d~~e~~~~l~~a~-~-~~~P~~iR~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-vl~~~~~~~~~~~~~~~~~g~ 77 (158)
|..|+.+.....+++.-. . ...|.+|..||.+.+....+. ....+.-|+.+ ++.+.. .....-
T Consensus 723 V~~pstpaq~fHlLRrq~~r~~rkPLiimtPKslLR~~~a~S-----~~~el~~~~F~~vl~d~~---------~~~~~v 788 (906)
T COG0567 723 VVVPSTPAQYFHLLRRQALRDFRKPLIVMTPKSLLRHKLAVS-----SLEELTEGTFQPVLEDID---------ELDPKV 788 (906)
T ss_pred EEecCcHHHHHHHHHHHHhhcccCceEecChhhhhhccccCC-----chhhhchhhhhhhhcccc---------ccccce
Confidence 467899999998887444 3 468999988876654322111 11111222222 222210 000124
Q ss_pred cEEEEEechhHHHHHHHHHHHHhCC-CcEEEEEeccccCCCHHHHHHHHhCC----CeEEEEeCCcCCCChH
Q psy7291 78 DITIVGHSKAVETALDAAKILAGQG-IDAEVINLRSLRPLDIETITKSVMKT----NYLISVEGGWPQCGIG 144 (158)
Q Consensus 78 ~~~ii~~G~~~~~a~ea~~~L~~~g-i~~~vi~~~~l~Pld~~~l~~~~~~~----~~vvvvEe~~~~GG~g 144 (158)
+.++++.|.+.....+.. .+.| .++.++.+..|+|||.+.+...++++ ..++.=||-.-.|.+.
T Consensus 789 ~rvvlcSGKvyydl~~~r---~~~g~~dvaiiRiEqLyPfP~~~l~~~l~~y~~~~e~vW~QEEp~N~Gaw~ 857 (906)
T COG0567 789 KRVVLCSGKVYYDLLEQR---EKDGRDDVAIVRIEQLYPFPAKALAALLAKYPNVKEFVWCQEEPKNQGAWY 857 (906)
T ss_pred eeEEeeccchHHHHHHHH---hhcCCcceeEEeeecccCchHHHHHHHHHhccccccccccccCCCccccHH
Confidence 568889998887766554 3333 57999999999999999988888765 4678888877677765
No 53
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=90.50 E-value=1.4 Score=28.67 Aligned_cols=68 Identities=15% Similarity=0.069 Sum_probs=45.7
Q ss_pred CCcEEEEEec----hhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHh--C--CCeEEEEeCCcCCCChHHHH
Q psy7291 76 GKDITIVGHS----KAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVM--K--TNYLISVEGGWPQCGIGSEI 147 (158)
Q Consensus 76 g~~~~ii~~G----~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~--~--~~~vvvvEe~~~~GG~g~~i 147 (158)
..+++|++.| +.+..+.+|.+.|.+.|++...+++.. |.+...++.+ + +-..+++.. ...||+....
T Consensus 7 ~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~----~~~~~~~l~~~~g~~tvP~vfi~g-~~iGG~~~l~ 81 (90)
T cd03028 7 ENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILE----DEEVRQGLKEYSNWPTFPQLYVNG-ELVGGCDIVK 81 (90)
T ss_pred cCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCC----CHHHHHHHHHHhCCCCCCEEEECC-EEEeCHHHHH
Confidence 5789999988 478888899999999999999999753 3332222222 1 224566654 4479986544
Q ss_pred H
Q psy7291 148 S 148 (158)
Q Consensus 148 ~ 148 (158)
+
T Consensus 82 ~ 82 (90)
T cd03028 82 E 82 (90)
T ss_pred H
Confidence 3
No 54
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=89.60 E-value=4.1 Score=34.03 Aligned_cols=77 Identities=18% Similarity=0.171 Sum_probs=58.2
Q ss_pred CCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhCC---CeEEEEeCCcCCCChH--HHHHHH
Q psy7291 76 GKDITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKT---NYLISVEGGWPQCGIG--SEISAR 150 (158)
Q Consensus 76 g~~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~---~~vvvvEe~~~~GG~g--~~i~~~ 150 (158)
|.+++++..|.-...-.+.++. .|.++.+++..|=.|+|.+.+.+.+++. +.|.++-.-+++|=+- .+|+..
T Consensus 80 gdkVLv~~nG~FG~R~~~ia~~---~g~~v~~~~~~wg~~v~p~~v~~~L~~~~~~~~V~~vH~ETSTGvlnpl~~I~~~ 156 (383)
T COG0075 80 GDKVLVVVNGKFGERFAEIAER---YGAEVVVLEVEWGEAVDPEEVEEALDKDPDIKAVAVVHNETSTGVLNPLKEIAKA 156 (383)
T ss_pred CCeEEEEeCChHHHHHHHHHHH---hCCceEEEeCCCCCCCCHHHHHHHHhcCCCccEEEEEeccCcccccCcHHHHHHH
Confidence 7899999999988876665554 4889999999999999999999999843 4556665555544433 567777
Q ss_pred HHcCC
Q psy7291 151 IMEIP 155 (158)
Q Consensus 151 l~~~~ 155 (158)
+.++|
T Consensus 157 ~k~~g 161 (383)
T COG0075 157 AKEHG 161 (383)
T ss_pred HHHcC
Confidence 76664
No 55
>cd01481 vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=89.35 E-value=1.7 Score=31.54 Aligned_cols=55 Identities=16% Similarity=0.284 Sum_probs=43.2
Q ss_pred EEEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhCCCeEEEEeC
Q psy7291 79 ITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKTNYLISVEG 136 (158)
Q Consensus 79 ~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~~~vvvvEe 136 (158)
++||+-|.....+.++++.|++.|+.+=.|-. ...|.+.|..+..+-.+|+++++
T Consensus 110 ~vviTdG~s~d~~~~~a~~lr~~gv~i~~vG~---~~~~~~eL~~ias~p~~vf~v~~ 164 (165)
T cd01481 110 LVLITGGKSQDDVERPAVALKRAGIVPFAIGA---RNADLAELQQIAFDPSFVFQVSD 164 (165)
T ss_pred EEEEeCCCCcchHHHHHHHHHHCCcEEEEEeC---CcCCHHHHHHHhCCCccEEEecC
Confidence 56788887777788899999998866544433 45799999999988889999875
No 56
>COG2609 AceE Pyruvate dehydrogenase complex, dehydrogenase (E1) component [Energy production and conversion]
Probab=89.08 E-value=2.5 Score=37.97 Aligned_cols=100 Identities=17% Similarity=0.215 Sum_probs=63.6
Q ss_pred cccCCHHHHHHHHHHHHhC-------CCcEEEEecccccccc-cCCCCcccCCCcccccCceEEEeeccccccCCCcccc
Q psy7291 2 VSPYNSEDAKGLLKAAIRD-------PDPVVFLENELLYGVQ-YPMGDEALSKDFVLPIGKAKVEKQGEAFYHLDAPVIR 73 (158)
Q Consensus 2 ~~P~d~~e~~~~l~~a~~~-------~~P~~iR~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~vl~~~~~~~~~~~~~~~ 73 (158)
+.|+-..|+.-++++.++. +.-.||+.-...|... -|.+. ...+.-| ...++... .
T Consensus 658 YdPafayEvAVI~~~g~~rmy~~~qe~v~yYlt~~ne~~~qPamp~ga-----e~gI~kG-~Y~l~~~~----------~ 721 (887)
T COG2609 658 YDPAFAYEVAVIMQDGLRRMYGEGQENVFYYITLSNENYPQPAMPEGA-----EEGIIKG-IYKLETPG----------G 721 (887)
T ss_pred cCchHHHHHHHHHHHHHHHHhccCcCCcEEEEEeccCcCCCCCCCCcc-----hhhhhhc-eeEeecCC----------C
Confidence 5788899999888888861 3356777544444321 01110 1122223 23444310 0
Q ss_pred cCCCcEEEEEechhHHHHHHHHHHHHh-CCCcEEEEEeccccCCC
Q psy7291 74 VTGKDITIVGHSKAVETALDAAKILAG-QGIDAEVINLRSLRPLD 117 (158)
Q Consensus 74 ~~g~~~~ii~~G~~~~~a~ea~~~L~~-~gi~~~vi~~~~l~Pld 117 (158)
..+.++.|++.|.....+++|++.|.+ .|+.++|+++.+..-|.
T Consensus 722 ~~~~~vqll~SGai~~ea~~AaelL~~d~gv~adl~svtS~~eL~ 766 (887)
T COG2609 722 QGKAKVQLLGSGAILREALEAAELLAKDYGVEADLWSVTSFDELA 766 (887)
T ss_pred CCCceEEEEecchhHHHHHHHHHHHhhccccccCeeecccHHHHh
Confidence 014789999999999999999999987 68999999887654443
No 57
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=88.62 E-value=2.1 Score=28.36 Aligned_cols=71 Identities=15% Similarity=0.134 Sum_probs=46.7
Q ss_pred CCcEEEEEec----hhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHh-CCCeEEEEeCCcCCCChHHHHH
Q psy7291 76 GKDITIVGHS----KAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVM-KTNYLISVEGGWPQCGIGSEIS 148 (158)
Q Consensus 76 g~~~~ii~~G----~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~-~~~~vvvvEe~~~~GG~g~~i~ 148 (158)
..+++|++.| +.+..+.+|.+.|.+.|++...+++.. .|--.+.+.+.-. .+-..+++.... .||+.+...
T Consensus 11 ~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~-~~~~~~~l~~~tg~~tvP~vfi~g~~-iGG~ddl~~ 86 (97)
T TIGR00365 11 ENPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLE-DPEIRQGIKEYSNWPTIPQLYVKGEF-VGGCDIIME 86 (97)
T ss_pred cCCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCC-CHHHHHHHHHHhCCCCCCEEEECCEE-EeChHHHHH
Confidence 5789999988 578888899999999999999998853 2211222333221 122456677544 788865443
No 58
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=87.37 E-value=2.2 Score=29.24 Aligned_cols=42 Identities=19% Similarity=0.237 Sum_probs=36.5
Q ss_pred hhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhCC
Q psy7291 86 KAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKT 128 (158)
Q Consensus 86 ~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~ 128 (158)
+.+..+.+|.+-|+++|+.+.++++.- .|++.+.|.+.++..
T Consensus 8 p~C~~crkA~~~L~~~gi~~~~~d~~~-~p~s~~eL~~~l~~~ 49 (113)
T cd03033 8 PGCANNARQKALLEAAGHEVEVRDLLT-EPWTAETLRPFFGDL 49 (113)
T ss_pred CCCHHHHHHHHHHHHcCCCcEEeehhc-CCCCHHHHHHHHHHc
Confidence 466788889999999999999999997 899999998888744
No 59
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=87.11 E-value=2.5 Score=25.99 Aligned_cols=66 Identities=14% Similarity=0.082 Sum_probs=42.6
Q ss_pred cEEEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhC-CCeEEEEeCCcCCCChHHH
Q psy7291 78 DITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMK-TNYLISVEGGWPQCGIGSE 146 (158)
Q Consensus 78 ~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~-~~~vvvvEe~~~~GG~g~~ 146 (158)
+++|.+. +.+..+.+|.+.|++.|++...+++..-.+ ..+.+.+.... .-.++++... ..||.-+.
T Consensus 2 ~v~ly~~-~~C~~C~ka~~~L~~~gi~~~~~di~~~~~-~~~el~~~~g~~~vP~v~i~~~-~iGg~~~~ 68 (73)
T cd03027 2 RVTIYSR-LGCEDCTAVRLFLREKGLPYVEINIDIFPE-RKAELEERTGSSVVPQIFFNEK-LVGGLTDL 68 (73)
T ss_pred EEEEEec-CCChhHHHHHHHHHHCCCceEEEECCCCHH-HHHHHHHHhCCCCcCEEEECCE-EEeCHHHH
Confidence 3455544 556778888889999999999998875322 23345554433 3356666654 47888543
No 60
>COG3957 Phosphoketolase [Carbohydrate transport and metabolism]
Probab=86.83 E-value=1.3 Score=39.71 Aligned_cols=119 Identities=16% Similarity=0.161 Sum_probs=64.2
Q ss_pred CcccCCHHHHHHHHHHHHhCCC-cEEEEecccccccccCCCCcccCCCcccccCceEEEeeccccccCCCcccccCCCcE
Q psy7291 1 VVSPYNSEDAKGLLKAAIRDPD-PVVFLENELLYGVQYPMGDEALSKDFVLPIGKAKVEKQGEAFYHLDAPVIRVTGKDI 79 (158)
Q Consensus 1 V~~P~d~~e~~~~l~~a~~~~~-P~~iR~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vl~~~~~~~~~~~~~~~~~g~~~ 79 (158)
|+-|.|..-+..+..++++..+ -..|-.+|+..+....... ......-| .-+...++. ..+ ..|+
T Consensus 561 vyfPpDaNtlLav~d~~l~s~n~in~iVa~K~p~pq~~t~~q----A~~~~~~G-~~iwewas~-----d~g----epdv 626 (793)
T COG3957 561 VYFPPDANTLLAVYDHCLRSRNKINVIVASKQPRPQWLTMEQ----AEKHCTDG-AGIWEWASG-----DDG----EPDV 626 (793)
T ss_pred EecCCCCcchhhhhhHHhhccCceEEEEecCCCcceeecHHH----HHHHhhcC-cEEEEeccC-----CCC----CCCE
Confidence 4679999999999999998643 3333222322111111000 00001112 112222100 000 3579
Q ss_pred EEEEechh-HHHHHHHHHHHHhCC--CcEEE---EEeccccCCC-------HHHHHHHHhCCCeEEE
Q psy7291 80 TIVGHSKA-VETALDAAKILAGQG--IDAEV---INLRSLRPLD-------IETITKSVMKTNYLIS 133 (158)
Q Consensus 80 ~ii~~G~~-~~~a~ea~~~L~~~g--i~~~v---i~~~~l~Pld-------~~~l~~~~~~~~~vvv 133 (158)
++.+.|.+ +-.+++|+..|++++ +.+.+ +++..+.|-. ...+..+.-..+.++.
T Consensus 627 V~A~~Gd~~t~e~laAa~~L~e~~p~l~vRvVnVvdl~rLq~~~~hphg~~d~efd~lFt~d~pvif 693 (793)
T COG3957 627 VMACAGDVPTIEVLAAAQILREEGPELRVRVVNVVDLMRLQPPHDHPHGLSDAEFDSLFTTDKPVIF 693 (793)
T ss_pred EEEecCCcchHHHHHHHHHHHHhCccceEEEEEEecchhccCCccCCCCCCHHHHHhcCCCCcceee
Confidence 99999984 577999999999998 66555 4556665533 3445555444444544
No 61
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=85.42 E-value=2.3 Score=28.66 Aligned_cols=42 Identities=29% Similarity=0.386 Sum_probs=30.4
Q ss_pred hhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhCC
Q psy7291 86 KAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKT 128 (158)
Q Consensus 86 ~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~ 128 (158)
+.+..+.+|.+-|++.|+.+..+++.- .|++.+.|.++++..
T Consensus 4 ~~C~t~rka~~~L~~~gi~~~~~d~~k-~p~s~~el~~~l~~~ 45 (110)
T PF03960_consen 4 PNCSTCRKALKWLEENGIEYEFIDYKK-EPLSREELRELLSKL 45 (110)
T ss_dssp TT-HHHHHHHHHHHHTT--EEEEETTT-S---HHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCeEeehhhh-CCCCHHHHHHHHHHh
Confidence 356788899999999999999999996 899999888877643
No 62
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=85.30 E-value=3.6 Score=28.97 Aligned_cols=66 Identities=18% Similarity=0.251 Sum_probs=45.4
Q ss_pred chhHHHHHHHHHHHHhCCCcEEEEEeccccCCC-------------H--HHHHHHHhCCCeEEEEeCCcCCCChHHHHHH
Q psy7291 85 SKAVETALDAAKILAGQGIDAEVINLRSLRPLD-------------I--ETITKSVMKTNYLISVEGGWPQCGIGSEISA 149 (158)
Q Consensus 85 G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld-------------~--~~l~~~~~~~~~vvvvEe~~~~GG~g~~i~~ 149 (158)
|.+...+..+.+.+++.|+++++++++-. |++ . +.+.+.+...+.+|++=--+ .|++...+..
T Consensus 14 ~~t~~l~~~~~~~l~~~g~e~~~i~l~~~-~~p~~~~~~~~~~~~~d~~~~~~~~l~~aD~iI~~sP~y-~~~~s~~lK~ 91 (152)
T PF03358_consen 14 SNTRKLAEAVAEQLEEAGAEVEVIDLADY-PLPCCDGDFECPCYIPDDVQELYDKLKEADGIIFASPVY-NGSVSGQLKN 91 (152)
T ss_dssp SHHHHHHHHHHHHHHHTTEEEEEEECTTS-HCHHHHHHHHHTGCTSHHHHHHHHHHHHSSEEEEEEEEB-TTBE-HHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCEEEEEecccc-chhhcccccccccCCcHHHHHHHhceecCCeEEEeecEE-cCcCChhhhH
Confidence 44455666677788888999999999986 322 1 33556666778888877666 6888877766
Q ss_pred HHH
Q psy7291 150 RIM 152 (158)
Q Consensus 150 ~l~ 152 (158)
++-
T Consensus 92 ~lD 94 (152)
T PF03358_consen 92 FLD 94 (152)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 63
>COG0680 HyaD Ni,Fe-hydrogenase maturation factor [Energy production and conversion]
Probab=84.43 E-value=3.1 Score=30.38 Aligned_cols=58 Identities=19% Similarity=0.164 Sum_probs=40.4
Q ss_pred CcEEEEEechhH----HHHHHHHHHHHhCCC---cEEEEEeccccCCCHHHHHHHHhCCCeEEEEeCCc
Q psy7291 77 KDITIVGHSKAV----ETALDAAKILAGQGI---DAEVINLRSLRPLDIETITKSVMKTNYLISVEGGW 138 (158)
Q Consensus 77 ~~~~ii~~G~~~----~~a~ea~~~L~~~gi---~~~vi~~~~l~Pld~~~l~~~~~~~~~vvvvEe~~ 138 (158)
..++|+++|+.. ..-..++++|++... ++.+++.-+.-|. +...+..++.+++|+--.
T Consensus 2 ~~ilIlG~GN~L~~DDG~Gv~vae~L~~~~~~~~~v~vid~Gt~~~~----l~~~l~~~d~vIIVDav~ 66 (160)
T COG0680 2 MRILILGVGNILMGDDGFGVRVAEKLKKRYKPPENVEVIDGGTAGPN----LLGLLAGYDPVIIVDAVL 66 (160)
T ss_pred CeEEEEeeCCcccccCcccHHHHHHHHHhcCCCCCeEEEEcCCCcHH----HHHHhcCCCcEEEEEeee
Confidence 358889999854 223456677766543 6889999996554 556677888899988543
No 64
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=84.32 E-value=9.3 Score=25.31 Aligned_cols=66 Identities=15% Similarity=0.238 Sum_probs=44.9
Q ss_pred CCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHh-----CCCeEEEEeCCcCCCChHH
Q psy7291 76 GKDITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVM-----KTNYLISVEGGWPQCGIGS 145 (158)
Q Consensus 76 g~~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~-----~~~~vvvvEe~~~~GG~g~ 145 (158)
..+++|.+. +.+..+.+|.+.|.+.|++..++++.. .|-..+ +.+.+. .+=..|++.... .||+..
T Consensus 7 ~~~Vvvysk-~~Cp~C~~ak~~L~~~~i~~~~vdid~-~~~~~~-~~~~l~~~tg~~tvP~Vfi~g~~-iGG~dd 77 (99)
T TIGR02189 7 EKAVVIFSR-SSCCMCHVVKRLLLTLGVNPAVHEIDK-EPAGKD-IENALSRLGCSPAVPAVFVGGKL-VGGLEN 77 (99)
T ss_pred cCCEEEEEC-CCCHHHHHHHHHHHHcCCCCEEEEcCC-CccHHH-HHHHHHHhcCCCCcCeEEECCEE-EcCHHH
Confidence 456777777 778899999999999999999999875 333222 323332 233566777544 699865
No 65
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=83.92 E-value=3.5 Score=27.79 Aligned_cols=43 Identities=26% Similarity=0.336 Sum_probs=37.1
Q ss_pred hhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhCCC
Q psy7291 86 KAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKTN 129 (158)
Q Consensus 86 ~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~~ 129 (158)
+.+..+.+|.+.|++.|+.+.++++.. .|+..+.|.++++..+
T Consensus 7 ~~C~~crka~~~L~~~~i~~~~~di~~-~p~s~~eL~~~l~~~g 49 (105)
T cd03035 7 KNCDTVKKARKWLEARGVAYTFHDYRK-DGLDAATLERWLAKVG 49 (105)
T ss_pred CCCHHHHHHHHHHHHcCCCeEEEeccc-CCCCHHHHHHHHHHhC
Confidence 466788889999999999999999987 8999999998887543
No 66
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=83.78 E-value=3.6 Score=28.79 Aligned_cols=41 Identities=17% Similarity=0.229 Sum_probs=36.0
Q ss_pred hhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhC
Q psy7291 86 KAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMK 127 (158)
Q Consensus 86 ~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~ 127 (158)
+.++.+.+|.+-|+++|+.+.++|+.- .|++.+.|...++.
T Consensus 9 p~Cst~RKA~~~L~~~gi~~~~~d~~~-~p~t~~eL~~~l~~ 49 (126)
T TIGR01616 9 PGCANNARQKAALKASGHDVEVQDILK-EPWHADTLRPYFGN 49 (126)
T ss_pred CCCHHHHHHHHHHHHCCCCcEEEeccC-CCcCHHHHHHHHHH
Confidence 467889999999999999999999987 89999988888775
No 67
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=83.59 E-value=5.4 Score=29.30 Aligned_cols=50 Identities=20% Similarity=0.391 Sum_probs=33.8
Q ss_pred CCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhCCCeEEE
Q psy7291 76 GKDITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKTNYLIS 133 (158)
Q Consensus 76 g~~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~~~vvv 133 (158)
+++++||+.|.++... +++.|.++|.++.+++-.+ +.+.+.++..+-||+
T Consensus 44 gk~vlViG~G~~~G~~--~a~~L~~~g~~V~v~~r~~------~~l~~~l~~aDiVIs 93 (168)
T cd01080 44 GKKVVVVGRSNIVGKP--LAALLLNRNATVTVCHSKT------KNLKEHTKQADIVIV 93 (168)
T ss_pred CCEEEEECCcHHHHHH--HHHHHhhCCCEEEEEECCc------hhHHHHHhhCCEEEE
Confidence 7899999999886653 3556777788777777442 345566666554443
No 68
>PF01855 POR_N: Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg; InterPro: IPR002880 This family includes the N-terminal region of the pyruvate ferredoxin oxidoreductase, corresponding to the first two structural domains. This region is involved in inter subunit contacts []. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B 2C3M_A 2C3O_B 1KEK_B ....
Probab=83.50 E-value=0.89 Score=35.19 Aligned_cols=32 Identities=25% Similarity=0.408 Sum_probs=25.0
Q ss_pred CcccCCHHHHHHHHHHHHh----CCCcEEEEecccc
Q psy7291 1 VVSPYNSEDAKGLLKAAIR----DPDPVVFLENELL 32 (158)
Q Consensus 1 V~~P~d~~e~~~~l~~a~~----~~~P~~iR~~~~~ 32 (158)
|++|+|.||+.++...|++ ...||+++....+
T Consensus 121 vl~p~~~QEa~d~~~~A~~lAe~~~~PViv~~Dg~~ 156 (230)
T PF01855_consen 121 VLAPSSPQEAYDMTLIAFNLAEKYQTPVIVLFDGFL 156 (230)
T ss_dssp EEE--SHHHHHHHHHHHHHHHHHHTSEEEEEEECCC
T ss_pred EEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEechhh
Confidence 5789999999999999987 4889999865433
No 69
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=83.37 E-value=9 Score=24.14 Aligned_cols=60 Identities=23% Similarity=0.342 Sum_probs=39.2
Q ss_pred cEEEEEech-hHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhCCCeEEEEeCCcC
Q psy7291 78 DITIVGHSK-AVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKTNYLISVEGGWP 139 (158)
Q Consensus 78 ~~~ii~~G~-~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~~~vvvvEe~~~ 139 (158)
+++|++.+. ....+++.+..|+..|+.+.+ +.+. +.+....-..-..+...++++.+...
T Consensus 3 ~v~ii~~~~~~~~~a~~~~~~Lr~~g~~v~~-d~~~-~~~~~~~~~a~~~g~~~~iiig~~e~ 63 (91)
T cd00860 3 QVVVIPVTDEHLDYAKEVAKKLSDAGIRVEV-DLRN-EKLGKKIREAQLQKIPYILVVGDKEV 63 (91)
T ss_pred EEEEEeeCchHHHHHHHHHHHHHHCCCEEEE-ECCC-CCHHHHHHHHHHcCCCEEEEECcchh
Confidence 567777765 557888999999999998866 4443 45555432222345677888876543
No 70
>PRK10853 putative reductase; Provisional
Probab=81.46 E-value=4.6 Score=27.89 Aligned_cols=42 Identities=29% Similarity=0.312 Sum_probs=36.3
Q ss_pred hhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhCC
Q psy7291 86 KAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKT 128 (158)
Q Consensus 86 ~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~ 128 (158)
+.++.+.+|.+-|++.|+.+.++|+.- .|++.+.|.+.++..
T Consensus 8 ~~C~t~rkA~~~L~~~~i~~~~~d~~k-~p~s~~eL~~~l~~~ 49 (118)
T PRK10853 8 KNCDTIKKARRWLEAQGIDYRFHDYRV-DGLDSELLQGFIDEL 49 (118)
T ss_pred CCCHHHHHHHHHHHHcCCCcEEeehcc-CCcCHHHHHHHHHHc
Confidence 466788899999999999999999987 899999998888643
No 71
>cd06062 H2MP_MemB-H2up Endopeptidases belonging to membrane-bound hydrogenases group. These hydrogenases transfer electrons from H2 to a cytochrome that is bound to a membrane-located complex coupling electron transfer to transmembrane proton translocation. Endopeptidase HybD from E. coli is well studied in this group. Maturation of [NiFe] hydrogenases include proteolytic processing of large subunit, assembly with other subunits, and formation of the nickel metallocenter. Hydrogenase maturation endopeptidase (HybD) cleaves a short C-terminal peptide after a His or an Arg residue in the large subunit (pre-HybC) of hydrogenase 2 (hyb operon) in E. coli. This cleavage is nickel dependent. A variety of endopeptidases belong to this group that are similar in function and sequence homology. They include such proteins as HynC, HoxM, and HupD.
Probab=80.84 E-value=9.3 Score=27.13 Aligned_cols=56 Identities=18% Similarity=0.195 Sum_probs=37.7
Q ss_pred EEEEEechhH----HHHHHHHHHHHhC---CCcEEEEEeccccCCCHHHHHHHHhCCCeEEEEeCCc
Q psy7291 79 ITIVGHSKAV----ETALDAAKILAGQ---GIDAEVINLRSLRPLDIETITKSVMKTNYLISVEGGW 138 (158)
Q Consensus 79 ~~ii~~G~~~----~~a~ea~~~L~~~---gi~~~vi~~~~l~Pld~~~l~~~~~~~~~vvvvEe~~ 138 (158)
++|+++|+.. .....+++.|++. ..++.+++..+. | ..+.+.+.+++.+++|+--.
T Consensus 1 ilV~GiGN~l~gDDG~G~~va~~L~~~~~~~~~v~vi~~~~~-~---~~l~~~l~~~d~viiVDA~~ 63 (146)
T cd06062 1 ILVLGIGNILLADEGIGVHAVERLEENYSFPENVELIDGGTL-G---LELLPYIEEADRLIIVDAVD 63 (146)
T ss_pred CEEEEECccccccCcHHHHHHHHHHHhcCCCCCeEEEECCCC-H---HHHHHHHhcCCEEEEEEccc
Confidence 3678888765 3355667777654 345888888874 2 22455667889999999743
No 72
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=80.76 E-value=4.2 Score=28.13 Aligned_cols=43 Identities=23% Similarity=0.257 Sum_probs=37.0
Q ss_pred hhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhCCC
Q psy7291 86 KAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKTN 129 (158)
Q Consensus 86 ~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~~ 129 (158)
+.+..+.+|.+-|++.|+...+++..- .|++.+.|.++++..+
T Consensus 9 p~C~t~rka~~~L~~~gi~~~~~~y~~-~~~s~~eL~~~l~~~g 51 (117)
T COG1393 9 PNCSTCRKALAWLEEHGIEYTFIDYLK-TPPSREELKKILSKLG 51 (117)
T ss_pred CCChHHHHHHHHHHHcCCCcEEEEeec-CCCCHHHHHHHHHHcC
Confidence 356788999999999999999999986 8999999999887653
No 73
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=80.72 E-value=11 Score=26.21 Aligned_cols=74 Identities=11% Similarity=-0.052 Sum_probs=48.8
Q ss_pred EEEEEechhHHHHHHHHHHH----HhCCCcEEEEEeccc--------------cCCCHHHHHHHHh-CCCeEEEEeCCcC
Q psy7291 79 ITIVGHSKAVETALDAAKIL----AGQGIDAEVINLRSL--------------RPLDIETITKSVM-KTNYLISVEGGWP 139 (158)
Q Consensus 79 ~~ii~~G~~~~~a~ea~~~L----~~~gi~~~vi~~~~l--------------~Pld~~~l~~~~~-~~~~vvvvEe~~~ 139 (158)
+++++.||....+.+..+.+ ++.--+. -|...|+ .|-..+.|.++.. ++++|+|+==+..
T Consensus 3 illv~fGS~~~~~~~~~~~i~~~l~~~~p~~-~V~~afts~~i~~~l~~~~~~~p~~~eaL~~l~~~G~~~V~V~Pl~l~ 81 (127)
T cd03412 3 ILLVSFGTSYPTAEKTIDAIEDKVRAAFPDY-EVRWAFTSRMIRKKLKKRGIEVDTPEEALAKLAADGYTEVIVQSLHII 81 (127)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHHHHCCCC-eEEEEecHHHHHHHHHhcCCCCCCHHHHHHHHHHCCCCEEEEEeCeeE
Confidence 78999999887666554443 3332222 2233333 5777788888766 6789999998888
Q ss_pred CCChHHHHHHHHHc
Q psy7291 140 QCGIGSEISARIME 153 (158)
Q Consensus 140 ~GG~g~~i~~~l~~ 153 (158)
.|.-...|.+.+.+
T Consensus 82 ~G~e~~di~~~v~~ 95 (127)
T cd03412 82 PGEEYEKLKREVDA 95 (127)
T ss_pred CcHHHHHHHHHHHH
Confidence 77666666666543
No 74
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=80.71 E-value=4.8 Score=24.70 Aligned_cols=59 Identities=20% Similarity=0.279 Sum_probs=37.6
Q ss_pred hhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhCCCeEEEEeCCcCCCChHH
Q psy7291 86 KAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKTNYLISVEGGWPQCGIGS 145 (158)
Q Consensus 86 ~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~~~vvvvEe~~~~GG~g~ 145 (158)
+.+..+.+|.+.|.+.|+....+++.. .|-..+.+...-...-.+++++.....|||-.
T Consensus 7 ~~Cp~C~~ak~~L~~~~i~~~~~di~~-~~~~~~~~~~~g~~~vP~v~~~g~~~~~G~~~ 65 (72)
T TIGR02194 7 NNCVQCKMTKKALEEHGIAFEEINIDE-QPEAIDYVKAQGFRQVPVIVADGDLSWSGFRP 65 (72)
T ss_pred CCCHHHHHHHHHHHHCCCceEEEECCC-CHHHHHHHHHcCCcccCEEEECCCcEEeccCH
Confidence 445778888888999999999999875 33222333322112335678866546788754
No 75
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=80.08 E-value=6 Score=26.86 Aligned_cols=43 Identities=16% Similarity=0.298 Sum_probs=36.5
Q ss_pred hhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhCCC
Q psy7291 86 KAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKTN 129 (158)
Q Consensus 86 ~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~~ 129 (158)
+.+..+.+|.+-|++.|+.+..+|+.- .|+..+.+..+++..+
T Consensus 7 ~~C~t~rkA~~~L~~~~i~~~~~di~~-~~~t~~el~~~l~~~~ 49 (112)
T cd03034 7 PRCSKSRNALALLEEAGIEPEIVEYLK-TPPTAAELRELLAKLG 49 (112)
T ss_pred CCCHHHHHHHHHHHHCCCCeEEEeccc-CCcCHHHHHHHHHHcC
Confidence 467788899999999999999999887 8999998888877543
No 76
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. One of the enzymes Vanillyl-alcohol oxidase (VAO, 1.1.3.38 from EC) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110 []. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyses the oxidation of a wide variety of substrates, ranging from aromatic amines to 4-alkylphenols. ; GO: 0008762 UDP-N-acetylmuramate dehydrogenase activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZR6_A 3HSU_A 2AXR_A 3D2J_A 3D2H_A 3FW9_A 3FW8_A 3FW7_A 3GSY_A 3FWA_A ....
Probab=80.00 E-value=2.2 Score=29.61 Aligned_cols=28 Identities=29% Similarity=0.355 Sum_probs=25.8
Q ss_pred CcccCCHHHHHHHHHHHHhCCCcEEEEe
Q psy7291 1 VVSPYNSEDAKGLLKAAIRDPDPVVFLE 28 (158)
Q Consensus 1 V~~P~d~~e~~~~l~~a~~~~~P~~iR~ 28 (158)
|+.|.+.+|+.+++++|.+++.|+.+|-
T Consensus 4 vv~P~s~~ev~~~v~~a~~~~~~v~~~g 31 (139)
T PF01565_consen 4 VVRPKSVEEVQAIVKFANENGVPVRVRG 31 (139)
T ss_dssp EEEESSHHHHHHHHHHHHHTTSEEEEES
T ss_pred EEEeCCHHHHHHHHHHHHHcCCcEEEEc
Confidence 5789999999999999999999999984
No 77
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=79.50 E-value=23 Score=26.36 Aligned_cols=68 Identities=9% Similarity=0.021 Sum_probs=45.6
Q ss_pred echhHHHHHHHHHHHHh-CCCcEEEEEeccccCCCHHHH---------------HHHHhCCCeEEEEeCCcCCCChHHHH
Q psy7291 84 HSKAVETALDAAKILAG-QGIDAEVINLRSLRPLDIETI---------------TKSVMKTNYLISVEGGWPQCGIGSEI 147 (158)
Q Consensus 84 ~G~~~~~a~ea~~~L~~-~gi~~~vi~~~~l~Pld~~~l---------------~~~~~~~~~vvvvEe~~~~GG~g~~i 147 (158)
+|++-..|..+++.+++ .|..+.+++++-..| .+.. .+.+..++.|++.=-.+ .|++...+
T Consensus 12 ~G~T~~lA~~ia~g~~~~~G~ev~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsPty-~g~~~~~l 88 (200)
T PRK03767 12 YGHIETMAEAVAEGAREVAGAEVTIKRVPETVP--EEVAKKAGGKTDQAAPVATPDELADYDAIIFGTPTR-FGNMAGQM 88 (200)
T ss_pred CCHHHHHHHHHHHHHhhcCCcEEEEEeccccCC--HHHHHhcCCCcccCCCccCHHHHHhCCEEEEEeccc-CCCchHHH
Confidence 35555666677777877 899999999874332 2111 34455677777666555 89998888
Q ss_pred HHHHHcC
Q psy7291 148 SARIMEI 154 (158)
Q Consensus 148 ~~~l~~~ 154 (158)
..++...
T Consensus 89 k~fld~~ 95 (200)
T PRK03767 89 RNFLDQT 95 (200)
T ss_pred HHHHHHh
Confidence 8877654
No 78
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=79.36 E-value=6.5 Score=26.80 Aligned_cols=42 Identities=17% Similarity=0.283 Sum_probs=36.8
Q ss_pred hhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhCC
Q psy7291 86 KAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKT 128 (158)
Q Consensus 86 ~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~ 128 (158)
+.+..+.+|.+-|++.|+.+..+|+.. .|+..+.+.++++..
T Consensus 7 ~~C~t~rkA~~~L~~~~i~~~~~di~~-~p~t~~el~~~l~~~ 48 (114)
T TIGR00014 7 PRCSKSRNTLALLEDKGIEPEVVKYLK-NPPTKSELEAIFAKL 48 (114)
T ss_pred CCCHHHHHHHHHHHHCCCCeEEEeccC-CCcCHHHHHHHHHHc
Confidence 467888899999999999999999987 899999998888754
No 79
>PRK10026 arsenate reductase; Provisional
Probab=78.40 E-value=9 Score=27.41 Aligned_cols=42 Identities=14% Similarity=0.297 Sum_probs=37.2
Q ss_pred hhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhCC
Q psy7291 86 KAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKT 128 (158)
Q Consensus 86 ~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~ 128 (158)
+.++.+.+|.+-|++.|+.+.++++.- .|+..+.|..+++..
T Consensus 10 p~Cst~RKA~~wL~~~gi~~~~~d~~~-~ppt~~eL~~~l~~~ 51 (141)
T PRK10026 10 PACGTSRNTLEMIRNSGTEPTIIHYLE-TPPTRDELVKLIADM 51 (141)
T ss_pred CCCHHHHHHHHHHHHCCCCcEEEeeeC-CCcCHHHHHHHHHhC
Confidence 567888999999999999999999987 899999998888754
No 80
>cd00858 GlyRS_anticodon GlyRS Glycyl-anticodon binding domain. GlyRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=78.07 E-value=17 Score=24.73 Aligned_cols=59 Identities=12% Similarity=0.113 Sum_probs=39.4
Q ss_pred CCcEEEEEec--h-hHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHH-HhCCCeEEEEeCCc
Q psy7291 76 GKDITIVGHS--K-AVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKS-VMKTNYLISVEGGW 138 (158)
Q Consensus 76 g~~~~ii~~G--~-~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~-~~~~~~vvvvEe~~ 138 (158)
..+++|++.+ . ....+.+.++.|+..|+.+.+- .. +.+..+ +..+ -.+.+.++++.+..
T Consensus 26 p~~v~Ii~~~~~~~~~~~a~~la~~LR~~gi~v~~d-~~--~sl~kq-lk~A~k~g~~~~iiiG~~e 88 (121)
T cd00858 26 PIKVAVLPLVKRDELVEIAKEISEELRELGFSVKYD-DS--GSIGRR-YARQDEIGTPFCVTVDFDT 88 (121)
T ss_pred CcEEEEEecCCcHHHHHHHHHHHHHHHHCCCEEEEe-CC--CCHHHH-HHHhHhcCCCEEEEECcCc
Confidence 4578899888 4 4567888889999999887763 33 555444 3333 23556777777554
No 81
>cd06063 H2MP_Cyano-H2up This group of endopeptidases include HupW enzymes that are specific to the cyanobacterial hydrogenase and are involved in the C-terminal cleavage of the hydrogenase large subunit precursor protein. Cyanobacterial nickel-iron (NiFe)-hydrogenases are found exclusively in the N2-fixing strains and are encoded by hup (hydrogen uptake) genes. These uptake hydrogenases are heterodimers with a large (hupL) and small subunit (hupS) and catalyze the consumption of the H2 produced during N2 fixation. Sequence similarity shows that the putative metal-binding resides are well conserved in this group of hydrogen maturation proteases. This group also includes such proteins as the hydrogenase III from Aquifex aeolicus.
Probab=77.39 E-value=7 Score=27.80 Aligned_cols=56 Identities=11% Similarity=0.067 Sum_probs=37.4
Q ss_pred EEEEEechhH----HHHHHHHHHHHhCC--CcEEEEEeccccCCCHHHHHHHHhCCCeEEEEeCCc
Q psy7291 79 ITIVGHSKAV----ETALDAAKILAGQG--IDAEVINLRSLRPLDIETITKSVMKTNYLISVEGGW 138 (158)
Q Consensus 79 ~~ii~~G~~~----~~a~ea~~~L~~~g--i~~~vi~~~~l~Pld~~~l~~~~~~~~~vvvvEe~~ 138 (158)
++|+++|+.. .....+++.|++.. -++.+++..+.-+ .+...+.+++.+++|+-..
T Consensus 1 ~lVlGiGN~L~~DDG~G~~v~~~L~~~~~~~~v~~id~gt~~~----~l~~~l~~~d~vIiVDA~~ 62 (146)
T cd06063 1 LTIIGCGNLNRGDDGVGPILIRRLQAYLLPPHVRLVDCGTAGM----EVMFRARGAKQLIIIDASS 62 (146)
T ss_pred CEEEEECCcccccCcHHHHHHHHHhhcCCCCCeEEEECCCCHH----HHHHHhcCCCEEEEEEeCC
Confidence 3677888765 24556777776653 3478888887532 2455567889999999743
No 82
>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis. This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [] it is probably the anticodon binding domain [].; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding; PDB: 1KOG_B 1EVL_D 1EVK_B 1QF6_A 1FYF_B 2I4O_A 2I4M_A 2I4N_A 2I4L_A 1HC7_D ....
Probab=76.93 E-value=12 Score=23.91 Aligned_cols=56 Identities=21% Similarity=0.303 Sum_probs=38.4
Q ss_pred cEEEEEech----hHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHH-HhCCCeEEEEeC
Q psy7291 78 DITIVGHSK----AVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKS-VMKTNYLISVEG 136 (158)
Q Consensus 78 ~~~ii~~G~----~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~-~~~~~~vvvvEe 136 (158)
+++|+..|. ....+.+.++.|++.|+.+.+-+ . -..+..+ +..+ ..+...++++-+
T Consensus 1 qv~Ii~~~~~~~~~~~~a~~l~~~L~~~gi~v~~d~-~-~~~~~k~-~~~a~~~g~p~~iiiG~ 61 (94)
T PF03129_consen 1 QVVIIPVGKKDEEIIEYAQELANKLRKAGIRVELDD-S-DKSLGKQ-IKYADKLGIPFIIIIGE 61 (94)
T ss_dssp SEEEEESSCSHHHHHHHHHHHHHHHHHTTSEEEEES-S-SSTHHHH-HHHHHHTTESEEEEEEH
T ss_pred CEEEEEeCCCcHHHHHHHHHHHHHHHHCCCEEEEEC-C-CCchhHH-HHHHhhcCCeEEEEECc
Confidence 477888888 45678888999999998877665 2 2445444 4444 346677777764
No 83
>PF10740 DUF2529: Protein of unknown function (DUF2529); InterPro: IPR019676 This entry represents a protein family conserved in the Bacillales. Their function is not known. ; PDB: 3JX9_A.
Probab=76.58 E-value=12 Score=27.79 Aligned_cols=64 Identities=19% Similarity=0.113 Sum_probs=32.9
Q ss_pred CCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHH------hCCCeEEEEeCCcCCCC
Q psy7291 76 GKDITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSV------MKTNYLISVEGGWPQCG 142 (158)
Q Consensus 76 g~~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~------~~~~~vvvvEe~~~~GG 142 (158)
-.+++|++-.+.-..+.+.+++|.++|+++-+|. -..+=.. .+.+.+ +-.+.++==|++.+.|-
T Consensus 82 ~DRVllfs~~~~~~e~~~~a~~L~~~gi~~v~Vs--~~~~~~~-~l~~~~~~~Idl~~~~~LvP~EdG~Rig~ 151 (172)
T PF10740_consen 82 TDRVLLFSPFSTDEEAVALAKQLIEQGIPFVGVS--PNKPDEE-DLEDLADVHIDLKLPKPLVPTEDGDRIGF 151 (172)
T ss_dssp T-EEEEEES-S--HHHHHHHHHHHHHT--EEEEE---SS---T-TGGG-SSS-EE----S-SEE-TTS-EE--
T ss_pred cceEEEEeCCCCCHHHHHHHHHHHHCCCCEEEEE--ecCCCCC-chhhhhhheeecccCCCcccCCCCCEecc
Confidence 4578999998888899999999999999988887 1222211 222211 12356777777776543
No 84
>PRK10264 hydrogenase 1 maturation protease; Provisional
Probab=76.23 E-value=14 Score=27.82 Aligned_cols=59 Identities=10% Similarity=0.086 Sum_probs=42.7
Q ss_pred CCcEEEEEechhH----HHHHHHHHHHHhC---CCcEEEEEeccccCCCHHHHHHHHhCCCeEEEEeCCc
Q psy7291 76 GKDITIVGHSKAV----ETALDAAKILAGQ---GIDAEVINLRSLRPLDIETITKSVMKTNYLISVEGGW 138 (158)
Q Consensus 76 g~~~~ii~~G~~~----~~a~ea~~~L~~~---gi~~~vi~~~~l~Pld~~~l~~~~~~~~~vvvvEe~~ 138 (158)
..+++|+++|+.. .....+++.|++. ..++.+++..+.-+ .+...+.+++.+++|+--.
T Consensus 3 ~~rilVlGiGN~L~gDDGvG~~va~~L~~~~~~~~~V~vid~Gt~g~----~ll~~i~~~d~vIiVDAv~ 68 (195)
T PRK10264 3 EQRVVVMGLGNLLWADEGFGVRVAERLYAHYHWPEYVEIVDGGTQGL----NLLGYVESASHLLILDAID 68 (195)
T ss_pred CCCEEEEEeCccccccCcHHHHHHHHHHhhcCCCCCeEEEECCCCHH----HHHHHHcCCCEEEEEECCc
Confidence 3579999999976 3456678888654 23588999988533 3556777899999999643
No 85
>PRK10466 hybD hydrogenase 2 maturation endopeptidase; Provisional
Probab=76.14 E-value=19 Score=26.09 Aligned_cols=57 Identities=11% Similarity=0.102 Sum_probs=40.3
Q ss_pred cEEEEEechhH----HHHHHHHHHHHhC-C--CcEEEEEeccccCCCHHHHHHHHhCCCeEEEEeCCc
Q psy7291 78 DITIVGHSKAV----ETALDAAKILAGQ-G--IDAEVINLRSLRPLDIETITKSVMKTNYLISVEGGW 138 (158)
Q Consensus 78 ~~~ii~~G~~~----~~a~ea~~~L~~~-g--i~~~vi~~~~l~Pld~~~l~~~~~~~~~vvvvEe~~ 138 (158)
+++|+++|+.. .....+++.|++. . .++.+++..+.- ..+...+..++.+++|+-..
T Consensus 2 ~ilVlGiGN~l~gDDGvG~~va~~L~~~~~~~~~v~vid~gt~~----~~ll~~l~~~d~vIiVDA~~ 65 (164)
T PRK10466 2 RILVLGVGNILLTDEAIGVRIVEALEQRYILPDYVEILDGGTAG----MELLGDMANRDHLIIADAIV 65 (164)
T ss_pred ceEEEEECchhhccCcHHHHHHHHHHHhcCCCCCeEEEeccccH----HHHHHHHhCCCEEEEEEecC
Confidence 47899999876 2466778888653 2 358888888743 23556667889999999754
No 86
>cd00518 H2MP Hydrogenase specific C-terminal endopeptidases, also called Hydrogen Maturation Proteases (H2MP). These enzymes belong to the peptidase family M52. Maturation of [FeNi] hydrogenases includes formation of the nickel metallocenter, proteolytic processing and assembly with other subunits. Hydrogenase maturation endopeptidases are responsible for the proteolytic processing, liberating a short C-terminal peptide by cleaving after a His or an Arg residue, e.g., HycI (E. coli) is involved in processing of HypE, the large subunit of hydrogenase 3. This cleavage is nickel dependent. This CD also includes such hydrogenase-processing proteins as HydD, HupW, and HoxW, as well as, proteins of the F420-reducing hydrogenase of methanogens (e.g., FrcD). Also included, is the Pyrococcus furiosus FrxA protein, a bifunctional endopeptidase/ sulfhydrogenase found in NADP-reducing hyperthermophiles.The Pyrococcus FrxA is not related to those found in Helicobacter pylori.
Probab=76.04 E-value=14 Score=25.90 Aligned_cols=54 Identities=19% Similarity=0.153 Sum_probs=37.4
Q ss_pred EEEechhH----HHHHHHHHHHHhCC--CcEEEEEeccccCCCHHHHHHHHhCCCeEEEEeCCc
Q psy7291 81 IVGHSKAV----ETALDAAKILAGQG--IDAEVINLRSLRPLDIETITKSVMKTNYLISVEGGW 138 (158)
Q Consensus 81 ii~~G~~~----~~a~ea~~~L~~~g--i~~~vi~~~~l~Pld~~~l~~~~~~~~~vvvvEe~~ 138 (158)
|+++|+.. .....+++.|++.. .++.+++..+. ++ .+...+..++.+++|+-..
T Consensus 2 ViGiGN~l~~DDGvG~~v~~~L~~~~~~~~v~~id~gt~-~~---~l~~~l~~~d~viiVDA~~ 61 (139)
T cd00518 2 VLGIGNPLRGDDGFGPAVAERLEERYLPPGVEVIDGGTL-GL---ELLDLLEGADRVIIVDAVD 61 (139)
T ss_pred EEEECCcccccCcHHHHHHHHHHhcCCCCCeEEEECCCC-HH---HHHHHHhcCCeEEEEECcc
Confidence 66777654 23556777887653 46889998885 32 3556667789999999754
No 87
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=75.84 E-value=11 Score=26.58 Aligned_cols=42 Identities=24% Similarity=0.259 Sum_probs=36.4
Q ss_pred hhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhCC
Q psy7291 86 KAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKT 128 (158)
Q Consensus 86 ~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~ 128 (158)
+.+..+.+|.+-|++.|+.+.++++.. .|++.+.|.+.++..
T Consensus 8 ~~C~~crkA~~~L~~~~i~~~~~d~~~-~~~s~~eL~~~l~~~ 49 (132)
T PRK13344 8 SSCTSCKKAKTWLNAHQLSYKEQNLGK-EPLTKEEILAILTKT 49 (132)
T ss_pred CCCHHHHHHHHHHHHcCCCeEEEECCC-CCCCHHHHHHHHHHh
Confidence 567888889999999999999999886 899999988888754
No 88
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=75.02 E-value=18 Score=22.79 Aligned_cols=65 Identities=15% Similarity=0.171 Sum_probs=38.6
Q ss_pred hhHHHHHHHHHHHHh-----CCCcEEEEEeccccCCCHHHHHHHHh---CCCeEEEEeCCcCCCChHHHHHHHHHc
Q psy7291 86 KAVETALDAAKILAG-----QGIDAEVINLRSLRPLDIETITKSVM---KTNYLISVEGGWPQCGIGSEISARIME 153 (158)
Q Consensus 86 ~~~~~a~ea~~~L~~-----~gi~~~vi~~~~l~Pld~~~l~~~~~---~~~~vvvvEe~~~~GG~g~~i~~~l~~ 153 (158)
+.+..+.+|.+.|++ .|+....+|+.. .+...+.+.+... .+=..++++. ...||+. .+.+++.+
T Consensus 9 ~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~-~~~~~~el~~~~~~~~~~vP~ifi~g-~~igg~~-~~~~~~~~ 81 (85)
T PRK11200 9 PGCPYCVRAKELAEKLSEERDDFDYRYVDIHA-EGISKADLEKTVGKPVETVPQIFVDQ-KHIGGCT-DFEAYVKE 81 (85)
T ss_pred CCChhHHHHHHHHHhhcccccCCcEEEEECCC-ChHHHHHHHHHHCCCCCcCCEEEECC-EEEcCHH-HHHHHHHH
Confidence 345666666666666 689999998875 3333445555543 2224566664 4478884 45555543
No 89
>PF14097 SpoVAE: Stage V sporulation protein AE1
Probab=74.67 E-value=32 Score=25.53 Aligned_cols=74 Identities=18% Similarity=0.184 Sum_probs=49.2
Q ss_pred cEEEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccC--CCHHHHHHHHhCC---CeEEEEeCCcCCC-ChHHHHHHHH
Q psy7291 78 DITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRP--LDIETITKSVMKT---NYLISVEGGWPQC-GIGSEISARI 151 (158)
Q Consensus 78 ~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~P--ld~~~l~~~~~~~---~~vvvvEe~~~~G-G~g~~i~~~l 151 (158)
++.|||=|-. .|.++++...+ .+....|+...=+| +.-+.|.++++.+ .-++.+++.-..| |.|+....++
T Consensus 1 kVIlvTDGD~--~A~ravE~aa~-~iGgRCIS~S~GNPT~lsG~elV~lIk~a~~DPV~VMfDD~G~~g~G~GE~Al~~v 77 (180)
T PF14097_consen 1 KVILVTDGDE--YAKRAVEIAAK-NIGGRCISQSAGNPTPLSGEELVELIKQAPHDPVLVMFDDKGFIGEGPGEQALEYV 77 (180)
T ss_pred CEEEEECChH--HHHHHHHHHHH-HhCcEEEeccCCCCCcCCHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccHHHHHHH
Confidence 3678888854 45555555443 35567777666555 6667787877753 3566777765555 8899888888
Q ss_pred HcC
Q psy7291 152 MEI 154 (158)
Q Consensus 152 ~~~ 154 (158)
+.+
T Consensus 78 ~~h 80 (180)
T PF14097_consen 78 ANH 80 (180)
T ss_pred HcC
Confidence 765
No 90
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=74.59 E-value=17 Score=24.69 Aligned_cols=76 Identities=20% Similarity=0.283 Sum_probs=43.8
Q ss_pred CcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEec--------------cccC--------CCHHHHHHHHhCCCeEEEE
Q psy7291 77 KDITIVGHSKAVETALDAAKILAGQGIDAEVINLR--------------SLRP--------LDIETITKSVMKTNYLISV 134 (158)
Q Consensus 77 ~~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~--------------~l~P--------ld~~~l~~~~~~~~~vvvv 134 (158)
++++|+.-|.. +.++++.+++.|+.+-+++-. ..-| ++.+.+.+++++.. +..+
T Consensus 3 kkvLIanrGei---a~r~~ra~r~~Gi~tv~v~s~~d~~s~~~~~ad~~~~~~~~~~~~~yl~~e~I~~ia~~~g-~~~i 78 (110)
T PF00289_consen 3 KKVLIANRGEI---AVRIIRALRELGIETVAVNSNPDTVSTHVDMADEAYFEPPGPSPESYLNIEAIIDIARKEG-ADAI 78 (110)
T ss_dssp SEEEESS-HHH---HHHHHHHHHHTTSEEEEEEEGGGTTGHHHHHSSEEEEEESSSGGGTTTSHHHHHHHHHHTT-ESEE
T ss_pred CEEEEECCCHH---HHHHHHHHHHhCCcceeccCchhcccccccccccceecCcchhhhhhccHHHHhhHhhhhc-Cccc
Confidence 36788888877 445555666668876666321 2345 77777777776653 4444
Q ss_pred eCCcCCCChHHHHHHHHHcCCC
Q psy7291 135 EGGWPQCGIGSEISARIMEIPY 156 (158)
Q Consensus 135 Ee~~~~GG~g~~i~~~l~~~~~ 156 (158)
=-++-.-.....+++.+.++|+
T Consensus 79 ~pGyg~lse~~~fa~~~~~~gi 100 (110)
T PF00289_consen 79 HPGYGFLSENAEFAEACEDAGI 100 (110)
T ss_dssp ESTSSTTTTHHHHHHHHHHTT-
T ss_pred ccccchhHHHHHHHHHHHHCCC
Confidence 4444222234577777777665
No 91
>PRK10638 glutaredoxin 3; Provisional
Probab=73.97 E-value=13 Score=23.40 Aligned_cols=64 Identities=16% Similarity=0.144 Sum_probs=37.4
Q ss_pred EEEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHh-CCCeEEEEeCCcCCCChHH
Q psy7291 79 ITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVM-KTNYLISVEGGWPQCGIGS 145 (158)
Q Consensus 79 ~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~-~~~~vvvvEe~~~~GG~g~ 145 (158)
+.|.+. +.+..+.+|.+.|++.|+...++++.. .+--.+.+.+.-. ..-.+++++ +...||+.+
T Consensus 4 v~ly~~-~~Cp~C~~a~~~L~~~gi~y~~~dv~~-~~~~~~~l~~~~g~~~vP~i~~~-g~~igG~~~ 68 (83)
T PRK10638 4 VEIYTK-ATCPFCHRAKALLNSKGVSFQEIPIDG-DAAKREEMIKRSGRTTVPQIFID-AQHIGGCDD 68 (83)
T ss_pred EEEEEC-CCChhHHHHHHHHHHcCCCcEEEECCC-CHHHHHHHHHHhCCCCcCEEEEC-CEEEeCHHH
Confidence 444443 456788888888999999999988853 1100122333221 122455665 555799844
No 92
>TIGR02690 resist_ArsH arsenical resistance protein ArsH. Members of this protein family occur in arsenate resistance operons that include at least two different types of arsenate reductase. ArsH is not required for arsenate resistance in some systems. This family belongs to the larger family of NADPH-dependent FMN reductases (Pfam model pfam03358). The function of ArsH is not known.
Probab=73.83 E-value=33 Score=26.40 Aligned_cols=60 Identities=18% Similarity=0.233 Sum_probs=39.2
Q ss_pred HHHHHHHHHHhCCCcEEEEEeccccCC-CH--------HHHHHHHhCCCeEEEEeCCcCCCChHHHHHHHH
Q psy7291 90 TALDAAKILAGQGIDAEVINLRSLRPL-DI--------ETITKSVMKTNYLISVEGGWPQCGIGSEISARI 151 (158)
Q Consensus 90 ~a~ea~~~L~~~gi~~~vi~~~~l~Pl-d~--------~~l~~~~~~~~~vvvvEe~~~~GG~g~~i~~~l 151 (158)
.+..+.+.+.++|..++++++.-+ |+ |. ..+.+.+...+.++++=--| +||+...+.++|
T Consensus 45 la~~~~~~~~~~g~~v~~idl~~l-Pl~~~d~~~~p~v~~l~~~v~~ADgvii~TPEY-n~sipg~LKNai 113 (219)
T TIGR02690 45 LAEEAARLLGCEGRETRIFDPPGL-PLPDAAHADHPKVRELRQLSEWSEGQVWCSPER-HGAITGSQKDQI 113 (219)
T ss_pred HHHHHHHHHhhcCCEEEEeCcccC-CCCCcCcccCHHHHHHHHHHHhCCEEEEeCCcc-ccCcCHHHHHHH
Confidence 344455666667999999998754 33 21 23666777778777776666 788876665544
No 93
>TIGR00072 hydrog_prot hydrogenase maturation protease. HycI and HoxM are well-characterized as responsible for C-terminal protease activity on their respective hydrogenase large chains. A large number of homologous proteins appear responsible for the maturation of various forms of hydrogenase.
Probab=73.81 E-value=19 Score=25.49 Aligned_cols=55 Identities=15% Similarity=0.126 Sum_probs=36.6
Q ss_pred EEEEechhH----HHHHHHHHHHHhCC---CcEEEEEeccccCCCHHHHHHHHhCCCeEEEEeCCc
Q psy7291 80 TIVGHSKAV----ETALDAAKILAGQG---IDAEVINLRSLRPLDIETITKSVMKTNYLISVEGGW 138 (158)
Q Consensus 80 ~ii~~G~~~----~~a~ea~~~L~~~g---i~~~vi~~~~l~Pld~~~l~~~~~~~~~vvvvEe~~ 138 (158)
+|+++|+.. .....+++.|++.. -++++++..+.-+ .+...+.+++.+++|+--.
T Consensus 1 lViGiGN~l~~DDg~G~~v~~~L~~~~~~~~~v~~id~g~~~~----~l~~~l~~~d~viiVDA~~ 62 (145)
T TIGR00072 1 LVLGIGNILRGDDGFGPRVAERLEERYEFPPGVEVLDGGTLGL----ELLDAIEGADRVIVVDAVD 62 (145)
T ss_pred CEEEECchhcccCcHHHHHHHHHHHhcCCCCCeEEEECCCCHH----HHHHHHhCCCEEEEEEccC
Confidence 367777654 23455677776542 4688998888532 3556667889999999743
No 94
>COG0655 WrbA Multimeric flavodoxin WrbA [General function prediction only]
Probab=73.79 E-value=30 Score=25.93 Aligned_cols=69 Identities=16% Similarity=0.215 Sum_probs=51.6
Q ss_pred echhHHHHHHHHHHHHhCCCcEEEEEeccc--cC----------------CC-HHHHHHHHhCCCeEEEEeCCcCCCChH
Q psy7291 84 HSKAVETALDAAKILAGQGIDAEVINLRSL--RP----------------LD-IETITKSVMKTNYLISVEGGWPQCGIG 144 (158)
Q Consensus 84 ~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l--~P----------------ld-~~~l~~~~~~~~~vvvvEe~~~~GG~g 144 (158)
+|.+...+.++++.+++.|..+.++++.-. +| -| .+.|.+.+..++.||+.=.-+ .|++.
T Consensus 13 ~G~t~~l~~~~~~g~~~~G~E~~~i~v~~~~i~~c~~c~~c~~~~~c~~~dD~~~~i~~~l~~aD~iI~gsPvy-~g~vs 91 (207)
T COG0655 13 NGNTAKLAEAVLEGAEEAGAEVEIIRLPEKNIKPCTGCFACWKKKPCVIKDDDMNEIYEKLLEADGIIFGSPVY-FGNVS 91 (207)
T ss_pred CCcHHHHHHHHHHHHHHcCCEEEEEEecCCCcccchHHHhhhccCCCCCCcccHHHHHHHHHHCCEEEEeCCee-cCCch
Confidence 588888888888889988999999988744 11 12 245666666777777776666 79999
Q ss_pred HHHHHHHHc
Q psy7291 145 SEISARIME 153 (158)
Q Consensus 145 ~~i~~~l~~ 153 (158)
+.+..++-+
T Consensus 92 a~~K~fiDR 100 (207)
T COG0655 92 AQMKAFIDR 100 (207)
T ss_pred HHHHHHHhh
Confidence 998888755
No 95
>cd06070 H2MP_like-2 Putative [NiFe] hydrogenase-specific C-terminal protease. Sequence comparison shows similarity to hydrogenase specific C-terminal endopeptidases, also called Hydrogen Maturation Proteases (H2MP). Maturation of [FeNi] hydrogenases includes formation of the nickel metallocenter, proteolytic processing and assembly with other subunits. Hydrogenase maturation endopeptidases are responsible for the proteolytic processing, liberating a short C-terminal peptide by cleaving after a His or an Arg residue, e.g., HycI (E. coli) is involved in processing of HypE (the large subunit of hydrogenases 3). This cleavage is nickel dependent.
Probab=73.45 E-value=15 Score=25.88 Aligned_cols=53 Identities=13% Similarity=0.009 Sum_probs=36.0
Q ss_pred EEEEechhH----HHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhCCCeEEEEeCCc
Q psy7291 80 TIVGHSKAV----ETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKTNYLISVEGGW 138 (158)
Q Consensus 80 ~ii~~G~~~----~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~~~vvvvEe~~ 138 (158)
+|+++|+.. .....+++.|++ .++.+++..+. ...+...+.+++.+++|+-..
T Consensus 1 lVlGiGN~l~~DDg~G~~v~~~L~~--~~v~vi~~g~~----~~~ll~~i~~~d~viiVDA~~ 57 (140)
T cd06070 1 LIIGVGNRLYGDDGFGSCLAEALEQ--CGAPVFDGGLD----GFGLLSHLENYDIVIFIDVAV 57 (140)
T ss_pred CEEEECchhcccCcHHHHHHHHHhh--CCCEEEECCCc----HHHHHHHHcCCCEEEEEEeec
Confidence 367777755 345667777776 35778888772 223556667889999999754
No 96
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=73.34 E-value=11 Score=31.68 Aligned_cols=53 Identities=25% Similarity=0.363 Sum_probs=39.3
Q ss_pred cEEEE---EechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhCCCeEEE
Q psy7291 78 DITIV---GHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKTNYLIS 133 (158)
Q Consensus 78 ~~~ii---~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~~~vvv 133 (158)
.++|+ .||++-..|...++.|.+.|+++.++++..- |...|.+.+..++.+++
T Consensus 248 ~V~l~Y~smyg~T~~ma~aiaegl~~~gv~v~~~~~~~~---~~~eI~~~i~~a~~~vv 303 (388)
T COG0426 248 KVDLIYDSMYGNTEKMAQAIAEGLMKEGVDVEVINLEDA---DPSEIVEEILDAKGLVV 303 (388)
T ss_pred eEEEEEecccCCHHHHHHHHHHHhhhcCCceEEEEcccC---CHHHHHHHHhhcceEEE
Confidence 46665 6788888888889999999999999998874 55556565555554444
No 97
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=73.18 E-value=21 Score=29.28 Aligned_cols=64 Identities=19% Similarity=0.185 Sum_probs=49.1
Q ss_pred CCcEEEEEech-hHHHHHHHHHHHHhCCCc-EEEEEeccccCCCHHH-----HHHHHhCCCeEEEEeCCcC
Q psy7291 76 GKDITIVGHSK-AVETALDAAKILAGQGID-AEVINLRSLRPLDIET-----ITKSVMKTNYLISVEGGWP 139 (158)
Q Consensus 76 g~~~~ii~~G~-~~~~a~ea~~~L~~~gi~-~~vi~~~~l~Pld~~~-----l~~~~~~~~~vvvvEe~~~ 139 (158)
..+=+|+|+|. ......+|++.+++.|.. +.+++..+.+|-|.+. +..+.......+-+-+|+.
T Consensus 146 ~~kPiIlSTGma~~~ei~~av~~~r~~g~~~i~LLhC~s~YPap~ed~NL~~i~~l~~~Fn~~vGlSDHT~ 216 (347)
T COG2089 146 KGKPIILSTGMATIEEIEEAVAILRENGNPDIALLHCTSAYPAPFEDVNLKAIPKLAEAFNAIVGLSDHTL 216 (347)
T ss_pred cCCCEEEEcccccHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCHHHhhHHHHHHHHHHhCCccccccCcc
Confidence 34578899996 557899999999988754 8888999999988764 3444445677888888984
No 98
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=72.80 E-value=13 Score=25.13 Aligned_cols=42 Identities=24% Similarity=0.230 Sum_probs=35.5
Q ss_pred hhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhCC
Q psy7291 86 KAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKT 128 (158)
Q Consensus 86 ~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~ 128 (158)
+.+..+.+|.+.|++.|+.+..+++.- .|++.+.+.+.++..
T Consensus 8 ~~C~~c~ka~~~L~~~gi~~~~idi~~-~~~~~~el~~~~~~~ 49 (115)
T cd03032 8 PSCSSCRKAKQWLEEHQIPFEERNLFK-QPLTKEELKEILSLT 49 (115)
T ss_pred CCCHHHHHHHHHHHHCCCceEEEecCC-CcchHHHHHHHHHHh
Confidence 567888899999999999999999875 788888888887743
No 99
>PRK09622 porA pyruvate flavodoxin oxidoreductase subunit alpha; Reviewed
Probab=72.69 E-value=4.3 Score=34.10 Aligned_cols=35 Identities=17% Similarity=0.254 Sum_probs=28.7
Q ss_pred CcccCCHHHHHHHHHHHHh----C--CCcEEEEecccc-ccc
Q psy7291 1 VVSPYNSEDAKGLLKAAIR----D--PDPVVFLENELL-YGV 35 (158)
Q Consensus 1 V~~P~d~~e~~~~l~~a~~----~--~~P~~iR~~~~~-~~~ 35 (158)
+++|+|.||+.++...|++ + ..|++++..... .|.
T Consensus 140 vl~p~s~QEa~d~~~~Af~lAE~~~~~~Pviv~~Dg~~~sh~ 181 (407)
T PRK09622 140 SLCTCNPQEAYDFTLMAFKIAEDQKVRLPVIVNQDGFLCSHT 181 (407)
T ss_pred EEeCCCHHHHHHHHHHHHHHHHHhccCCCEEEEechhhhhCc
Confidence 5799999999999999997 2 679999987653 553
No 100
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=72.37 E-value=21 Score=22.27 Aligned_cols=71 Identities=17% Similarity=0.134 Sum_probs=44.0
Q ss_pred CCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHh-CCCeEEEEeCCcCCCChHHHHHHHH
Q psy7291 76 GKDITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVM-KTNYLISVEGGWPQCGIGSEISARI 151 (158)
Q Consensus 76 g~~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~-~~~~vvvvEe~~~~GG~g~~i~~~l 151 (158)
..++.|.+ .+.+..+.+|.+.|.+.|++...+++.. .-+.+.+.+... ..=.++++. +...||+ .+|.++|
T Consensus 7 ~~~V~ly~-~~~Cp~C~~ak~~L~~~gi~y~~idi~~--~~~~~~~~~~~g~~~vP~i~i~-g~~igG~-~~l~~~l 78 (79)
T TIGR02190 7 PESVVVFT-KPGCPFCAKAKATLKEKGYDFEEIPLGN--DARGRSLRAVTGATTVPQVFIG-GKLIGGS-DELEAYL 78 (79)
T ss_pred CCCEEEEE-CCCCHhHHHHHHHHHHcCCCcEEEECCC--ChHHHHHHHHHCCCCcCeEEEC-CEEEcCH-HHHHHHh
Confidence 34555544 4788899999999999999999998753 112223333221 222455565 4557888 5565555
No 101
>KOG2862|consensus
Probab=72.34 E-value=36 Score=28.06 Aligned_cols=69 Identities=17% Similarity=0.264 Sum_probs=47.7
Q ss_pred CCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhCCC-eEEEEeCCcCCCChHHHH
Q psy7291 76 GKDITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKTN-YLISVEGGWPQCGIGSEI 147 (158)
Q Consensus 76 g~~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~~-~vvvvEe~~~~GG~g~~i 147 (158)
|..++++++|.-...+ ++.++..|..+.++-..+=.-++-+.|.+-++.++ +.++|=.+...-|.-+.+
T Consensus 92 gd~vLv~~~G~wg~ra---~D~~~r~ga~V~~v~~~~G~~~~le~i~~~lsqh~p~~vfv~hgdsSTgV~q~~ 161 (385)
T KOG2862|consen 92 GDNVLVVSTGTWGQRA---ADCARRYGAEVDVVEADIGQAVPLEEITEKLSQHKPKAVFVTHGDSSTGVLQDL 161 (385)
T ss_pred CCeEEEEEechHHHHH---HHHHHhhCceeeEEecCcccCccHHHHHHHHHhcCCceEEEEecCccccccchH
Confidence 7889999999877765 55555669999999777666677788888777553 445554444445554443
No 102
>PRK12559 transcriptional regulator Spx; Provisional
Probab=71.19 E-value=18 Score=25.38 Aligned_cols=41 Identities=15% Similarity=0.175 Sum_probs=35.3
Q ss_pred hhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhC
Q psy7291 86 KAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMK 127 (158)
Q Consensus 86 ~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~ 127 (158)
+.+..+.+|.+-|++.|+....+++.. .|++.+.|.++++.
T Consensus 8 ~~C~~crkA~~~L~~~gi~~~~~di~~-~~~s~~el~~~l~~ 48 (131)
T PRK12559 8 ASCASCRKAKAWLEENQIDYTEKNIVS-NSMTVDELKSILRL 48 (131)
T ss_pred CCChHHHHHHHHHHHcCCCeEEEEeeC-CcCCHHHHHHHHHH
Confidence 466788889999999999999999986 89999888888875
No 103
>cd06068 H2MP_like-1 Putative [NiFe] hydrogenase-specific C-terminal protease. Sequence comparison shows similarity to hydrogenase specific C-terminal endopeptidases, also called Hydrogen Maturation Proteases (H2MP). Maturation of [FeNi] hydrogenases includes formation of the nickel metallocenter, proteolytic processing and assembly with other subunits. Hydrogenase maturation endopeptidases are responsible for the proteolytic processing, liberating a short C-terminal peptide by cleaving after a His or an Arg residue, e.g., HycI (E. coli) is involved in processing of HypE (the large subunit of hydrogenases 3). This cleavage is nickel dependent.
Probab=70.99 E-value=20 Score=25.35 Aligned_cols=55 Identities=13% Similarity=0.109 Sum_probs=34.9
Q ss_pred EEEechhH----HHHHHHHHHHHhCCC--cEEEEEeccccCCCHHHHHHHHhCCCeEEEEeCCc
Q psy7291 81 IVGHSKAV----ETALDAAKILAGQGI--DAEVINLRSLRPLDIETITKSVMKTNYLISVEGGW 138 (158)
Q Consensus 81 ii~~G~~~----~~a~ea~~~L~~~gi--~~~vi~~~~l~Pld~~~l~~~~~~~~~vvvvEe~~ 138 (158)
|+++|+.. .....+++.|+++.. ++.+++..+. ++ +.+.++++.++++++|+-..
T Consensus 2 ViGiGN~l~~DDGvG~~v~~~L~~~~~~~~v~~~d~g~~-~~--~l~~~~~~~~d~viiVDA~~ 62 (144)
T cd06068 2 VAGVGNIFLGDDGFGVEVARRLRPRQLPPGVRVADFGIR-GI--HLAYELLDGYDTLILVDAVP 62 (144)
T ss_pred EEEECccccccCcHHHHHHHHHhccCCCCCeEEEECCCC-HH--HHHHHHHhcCCEEEEEEecc
Confidence 56666654 245566777766543 3778887763 33 33335566788999998743
No 104
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=70.72 E-value=41 Score=26.25 Aligned_cols=73 Identities=18% Similarity=0.131 Sum_probs=45.7
Q ss_pred CCcEEEEEech-hHHHHHHHHHHH-HhCCCcEEEEEeccccCCCHHH-----HHHHHhCCCeEEEEeCCcCCCChHHHHH
Q psy7291 76 GKDITIVGHSK-AVETALDAAKIL-AGQGIDAEVINLRSLRPLDIET-----ITKSVMKTNYLISVEGGWPQCGIGSEIS 148 (158)
Q Consensus 76 g~~~~ii~~G~-~~~~a~ea~~~L-~~~gi~~~vi~~~~l~Pld~~~-----l~~~~~~~~~vvvvEe~~~~GG~g~~i~ 148 (158)
.+.=+|+++|. ....+.+|++.+ +..+.++.+++..+-+|-+.+. |..+-+.....+-+-+|.. |+...++
T Consensus 112 tgkPvIlSTG~stl~EI~~Av~~~~~~~~~~l~llHC~s~YP~~~e~~NL~~i~~L~~~f~~~vG~SDHt~--g~~~~~~ 189 (241)
T PF03102_consen 112 TGKPVILSTGMSTLEEIERAVEVLREAGNEDLVLLHCVSSYPTPPEDVNLRVIPTLKERFGVPVGYSDHTD--GIEAPIA 189 (241)
T ss_dssp T-S-EEEE-TT--HHHHHHHHHHHHHHCT--EEEEEE-SSSS--GGG--TTHHHHHHHHSTSEEEEEE-SS--SSHHHHH
T ss_pred hCCcEEEECCCCCHHHHHHHHHHHHhcCCCCEEEEecCCCCCCChHHcChHHHHHHHHhcCCCEEeCCCCC--CcHHHHH
Confidence 34557888885 668888999998 4556889999999999977754 3334446678889999996 5655555
Q ss_pred HH
Q psy7291 149 AR 150 (158)
Q Consensus 149 ~~ 150 (158)
+.
T Consensus 190 Av 191 (241)
T PF03102_consen 190 AV 191 (241)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 105
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=70.45 E-value=13 Score=25.09 Aligned_cols=41 Identities=27% Similarity=0.333 Sum_probs=34.3
Q ss_pred hhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhC
Q psy7291 86 KAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMK 127 (158)
Q Consensus 86 ~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~ 127 (158)
+.+..+.+|.+-|+++|+.+..+++.. .|...+.|.++++.
T Consensus 7 ~~C~~c~ka~~~L~~~~i~~~~idi~~-~~~~~~el~~~~~~ 47 (111)
T cd03036 7 PKCSTCRKAKKWLDEHGVDYTAIDIVE-EPPSKEELKKWLEK 47 (111)
T ss_pred CCCHHHHHHHHHHHHcCCceEEecccC-CcccHHHHHHHHHH
Confidence 467788889999999999999999886 78888888776664
No 106
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=70.43 E-value=16 Score=24.13 Aligned_cols=42 Identities=24% Similarity=0.284 Sum_probs=35.1
Q ss_pred hhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhCC
Q psy7291 86 KAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKT 128 (158)
Q Consensus 86 ~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~ 128 (158)
+.+..+.+|.+.|++.|+.+..+++.- .|+..+.+.+++...
T Consensus 7 ~~C~~c~ka~~~L~~~~i~~~~idi~~-~~~~~~~l~~~~~~~ 48 (105)
T cd02977 7 PNCSTSRKALAWLEEHGIEYEFIDYLK-EPPTKEELKELLAKL 48 (105)
T ss_pred CCCHHHHHHHHHHHHcCCCcEEEeecc-CCCCHHHHHHHHHhc
Confidence 457788889999999999999999985 788888888877653
No 107
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=69.91 E-value=17 Score=21.92 Aligned_cols=60 Identities=18% Similarity=0.110 Sum_probs=38.0
Q ss_pred hhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhC--CCeEEEEeCCcCCCChHHHH
Q psy7291 86 KAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMK--TNYLISVEGGWPQCGIGSEI 147 (158)
Q Consensus 86 ~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~--~~~vvvvEe~~~~GG~g~~i 147 (158)
+.+..+.+|.+.|++.|+....+++..- |--.+.+.+.... .-..++++... .||+.+..
T Consensus 8 ~~Cp~C~~ak~~L~~~~i~~~~i~i~~~-~~~~~~~~~~~~~~~~vP~v~i~g~~-igg~~~~~ 69 (75)
T cd03418 8 PNCPYCVRAKALLDKKGVDYEEIDVDGD-PALREEMINRSGGRRTVPQIFIGDVH-IGGCDDLY 69 (75)
T ss_pred CCChHHHHHHHHHHHCCCcEEEEECCCC-HHHHHHHHHHhCCCCccCEEEECCEE-EeChHHHH
Confidence 5678888888899999999999988753 1111222222221 23567777655 68886543
No 108
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=68.92 E-value=12 Score=25.37 Aligned_cols=44 Identities=18% Similarity=0.203 Sum_probs=36.0
Q ss_pred chhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhCCC
Q psy7291 85 SKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKTN 129 (158)
Q Consensus 85 G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~~ 129 (158)
-+.+..+.+|.+-|++.|+.+..+++.. .|...+.+.++++..+
T Consensus 6 ~~~C~~c~ka~~~L~~~~i~~~~idi~~-~~~~~~el~~l~~~~~ 49 (117)
T TIGR01617 6 SPNCTTCKKARRWLEANGIEYQFIDIGE-DGPTREELLDILSLLE 49 (117)
T ss_pred CCCCHHHHHHHHHHHHcCCceEEEecCC-ChhhHHHHHHHHHHcC
Confidence 3567888889999999999999999975 7888888888777543
No 109
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=68.90 E-value=14 Score=22.76 Aligned_cols=60 Identities=13% Similarity=0.083 Sum_probs=38.0
Q ss_pred hhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHh-CCCeEEEEeCCcCCCChHHHH
Q psy7291 86 KAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVM-KTNYLISVEGGWPQCGIGSEI 147 (158)
Q Consensus 86 ~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~-~~~~vvvvEe~~~~GG~g~~i 147 (158)
+.+..+.+|.+.|++.|+....+++.. .|-..+.+.+... ..-..++++... .||+.+..
T Consensus 7 ~~Cp~C~~a~~~L~~~~i~~~~~di~~-~~~~~~~~~~~~g~~~vP~i~i~g~~-igg~~~~~ 67 (79)
T TIGR02181 7 PYCPYCTRAKALLSSKGVTFTEIRVDG-DPALRDEMMQRSGRRTVPQIFIGDVH-VGGCDDLY 67 (79)
T ss_pred CCChhHHHHHHHHHHcCCCcEEEEecC-CHHHHHHHHHHhCCCCcCEEEECCEE-EcChHHHH
Confidence 567788888888999999999998864 2211222333221 123566777554 78886544
No 110
>cd00859 HisRS_anticodon HisRS Histidyl-anticodon binding domain. HisRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=68.85 E-value=24 Score=21.65 Aligned_cols=55 Identities=24% Similarity=0.276 Sum_probs=34.1
Q ss_pred cEEEEEech-hHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHh-CCCeEEEEe
Q psy7291 78 DITIVGHSK-AVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVM-KTNYLISVE 135 (158)
Q Consensus 78 ~~~ii~~G~-~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~-~~~~vvvvE 135 (158)
+++|++.+. ....+.+.+..|++.|+.+.+.... ..++. .+...-+ +...++++.
T Consensus 3 ~v~i~~~~~~~~~~a~~i~~~Lr~~g~~v~~~~~~--~~~~~-~~~~a~~~~~~~~i~i~ 59 (91)
T cd00859 3 DVYVVPLGEGALSEALELAEQLRDAGIKAEIDYGG--RKLKK-QFKYADRSGARFAVILG 59 (91)
T ss_pred cEEEEEcChHHHHHHHHHHHHHHHCCCEEEEecCC--CCHHH-HHHHHHHcCCCEEEEEc
Confidence 577887776 4467888889999999877664322 23433 3443332 345667775
No 111
>PF00258 Flavodoxin_1: Flavodoxin; InterPro: IPR008254 This domain is found in a number of proteins including flavodoxin and nitric-oxide synthase. Flavodoxins are electron-transfer proteins that function in various electron transport systems. They bind one FMN molecule, which serves as a redox-active prosthetic group [] and are functionally interchangeable with ferredoxins. They have been isolated from prokaryotes, cyanobacteria, and some eukaryotic algae. Nitric oxide synthase (1.14.13.39 from EC) produces nitric oxide from L-arginie and NADPH. Nitric oxide acts as a messenger molecule in the body.; GO: 0010181 FMN binding, 0016491 oxidoreductase activity; PDB: 2WC1_A 2FVX_A 2FOX_A 6NUL_A 1FVX_A 2FAX_A 1FLN_A 1FLA_A 4NLL_A 2FDX_A ....
Probab=67.67 E-value=17 Score=25.08 Aligned_cols=48 Identities=17% Similarity=0.198 Sum_probs=29.7
Q ss_pred echhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhCCCeEEEEeC
Q psy7291 84 HSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKTNYLISVEG 136 (158)
Q Consensus 84 ~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~~~vvvvEe 136 (158)
||++-..|.+.++.|++.|+++.++++....+- +.+ +...+.++++=-
T Consensus 7 tG~te~~A~~ia~~l~~~g~~~~~~~~~~~~~~----~~~-~~~~~~~i~~~s 54 (143)
T PF00258_consen 7 TGNTEKMAEAIAEGLRERGVEVRVVDLDDFDDS----PSD-LSEYDLLIFGVS 54 (143)
T ss_dssp SSHHHHHHHHHHHHHHHTTSEEEEEEGGGSCHH----HHH-HCTTSEEEEEEE
T ss_pred chhHHHHHHHHHHHHHHcCCceeeechhhhhhh----hhh-hhhhceeeEeec
Confidence 344555566667778888999999987765432 333 344455555443
No 112
>PLN02409 serine--glyoxylate aminotransaminase
Probab=67.15 E-value=52 Score=27.17 Aligned_cols=77 Identities=8% Similarity=0.068 Sum_probs=44.3
Q ss_pred CCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhC-----CCeEEEEeCCcCCCChH--HHHH
Q psy7291 76 GKDITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMK-----TNYLISVEGGWPQCGIG--SEIS 148 (158)
Q Consensus 76 g~~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~-----~~~vvvvEe~~~~GG~g--~~i~ 148 (158)
|.++++..+|....... +.++..|.++..+....=..+|.+.+.+.++. .+-|++.-.++..|-.- ++|.
T Consensus 84 Gd~Vlv~~~~~~~~~~~---~~~~~~g~~v~~v~~~~~~~~~~~~l~~~l~~~~~~~~k~v~~~~~~~~tG~~~~~~~i~ 160 (401)
T PLN02409 84 GDKVVSFRIGQFSLLWI---DQMQRLNFDVDVVESPWGQGADLDILKSKLRQDTNHKIKAVCVVHNETSTGVTNDLAGVR 160 (401)
T ss_pred CCEEEEeCCCchhHHHH---HHHHHcCCceEEEECCCCCCCCHHHHHHHHhhCcCCCccEEEEEeecccccccCCHHHHH
Confidence 66677777777544322 33445577887777654344677778887763 34444443344455543 4555
Q ss_pred HH--HHcCC
Q psy7291 149 AR--IMEIP 155 (158)
Q Consensus 149 ~~--l~~~~ 155 (158)
+. ..++|
T Consensus 161 ~l~~~~~~g 169 (401)
T PLN02409 161 KLLDCAQHP 169 (401)
T ss_pred HHHhhhccC
Confidence 55 54444
No 113
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=67.01 E-value=31 Score=25.05 Aligned_cols=41 Identities=22% Similarity=0.274 Sum_probs=31.4
Q ss_pred EEEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHH
Q psy7291 79 ITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIE 119 (158)
Q Consensus 79 ~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~ 119 (158)
+++++.|.....++-+++.|.+.|+++.|+-+.-...++++
T Consensus 29 ~il~G~GnNGgDgl~~AR~L~~~G~~V~v~~~~~~~~~~~~ 69 (169)
T PF03853_consen 29 LILCGPGNNGGDGLVAARHLANRGYNVTVYLVGPPEKLSED 69 (169)
T ss_dssp EEEE-SSHHHHHHHHHHHHHHHTTCEEEEEEEESSSSTSHH
T ss_pred EEEECCCCChHHHHHHHHHHHHCCCeEEEEEEeccccCCHH
Confidence 55577788889999999999999999999665555556554
No 114
>PRK14012 cysteine desulfurase; Provisional
Probab=66.88 E-value=62 Score=26.61 Aligned_cols=79 Identities=16% Similarity=0.193 Sum_probs=45.8
Q ss_pred CcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhCCCeEEEEeC-CcCCCChH--HHHHHHHHc
Q psy7291 77 KDITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKTNYLISVEG-GWPQCGIG--SEISARIME 153 (158)
Q Consensus 77 ~~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~~~vvvvEe-~~~~GG~g--~~i~~~l~~ 153 (158)
+|.+|++.. .......++..++..|+++..+++..-..+|.+.|.+.+....+++++.. +...|-.- .+|.+...+
T Consensus 94 gd~Vi~~~~-~~~s~~~~~~~~~~~g~~~~~v~~~~~g~~d~~~l~~~i~~~t~lv~~~~~~n~tG~~~~~~~I~~la~~ 172 (404)
T PRK14012 94 GKHIITSKT-EHKAVLDTCRQLEREGFEVTYLDPQSNGIIDLEKLEAAMRDDTILVSIMHVNNEIGVIQDIAAIGEICRE 172 (404)
T ss_pred CCEEEEecC-ccHHHHHHHHHHHhCCCEEEEEccCCCCcCCHHHHHHhcCCCCEEEEEECcCCCccchhhHHHHHHHHHH
Confidence 345555432 22223334445555688777776653344677888888776556777765 44445443 567777666
Q ss_pred CCC
Q psy7291 154 IPY 156 (158)
Q Consensus 154 ~~~ 156 (158)
+|+
T Consensus 173 ~g~ 175 (404)
T PRK14012 173 RGI 175 (404)
T ss_pred cCC
Confidence 653
No 115
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=65.90 E-value=36 Score=27.99 Aligned_cols=56 Identities=14% Similarity=0.276 Sum_probs=36.5
Q ss_pred CCCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCH--------HHHHHHHhCCCeEEEE
Q psy7291 75 TGKDITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDI--------ETITKSVMKTNYLISV 134 (158)
Q Consensus 75 ~g~~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~--------~~l~~~~~~~~~vvvv 134 (158)
.|+.+.||++|++.... ++.|...|+++.+.+-+ -+..+. ..+.++++..+-|++.
T Consensus 15 kgKtVGIIG~GsIG~am---A~nL~d~G~~ViV~~r~-~~s~~~A~~~G~~v~sl~Eaak~ADVV~ll 78 (335)
T PRK13403 15 QGKTVAVIGYGSQGHAQ---AQNLRDSGVEVVVGVRP-GKSFEVAKADGFEVMSVSEAVRTAQVVQML 78 (335)
T ss_pred CcCEEEEEeEcHHHHHH---HHHHHHCcCEEEEEECc-chhhHHHHHcCCEECCHHHHHhcCCEEEEe
Confidence 37889999999998764 45677779988877532 122111 1366777777655443
No 116
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=65.39 E-value=32 Score=21.75 Aligned_cols=58 Identities=19% Similarity=0.228 Sum_probs=38.1
Q ss_pred cEEEEEech----hHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHH-HhCCCeEEEEeCCc
Q psy7291 78 DITIVGHSK----AVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKS-VMKTNYLISVEGGW 138 (158)
Q Consensus 78 ~~~ii~~G~----~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~-~~~~~~vvvvEe~~ 138 (158)
.++|+..+. ....+.+.+..|+..|+++.+ +.+. ..+... +... ..+.+.++++-+..
T Consensus 3 qv~i~p~~~~~~~~~~~a~~la~~Lr~~g~~v~~-d~~~-~~l~k~-i~~a~~~g~~~~iiiG~~e 65 (94)
T cd00861 3 DVVIIPMNMKDEVQQELAEKLYAELQAAGVDVLL-DDRN-ERPGVK-FADADLIGIPYRIVVGKKS 65 (94)
T ss_pred EEEEEEcCCCcHHHHHHHHHHHHHHHHCCCEEEE-ECCC-CCcccc-hhHHHhcCCCEEEEECCch
Confidence 467777665 456788888999999998876 4443 455554 3333 34667777777544
No 117
>TIGR02006 IscS cysteine desulfurase IscS. This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.
Probab=64.86 E-value=58 Score=26.80 Aligned_cols=78 Identities=17% Similarity=0.193 Sum_probs=43.5
Q ss_pred cEEEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhCCCeEEEEeCCc-CCCChH--HHHHHHHHcC
Q psy7291 78 DITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKTNYLISVEGGW-PQCGIG--SEISARIMEI 154 (158)
Q Consensus 78 ~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~~~vvvvEe~~-~~GG~g--~~i~~~l~~~ 154 (158)
+.+|++. ........+...++..|+++..+.+..-..+|.+.+.+.++...+++++.... ..|-+- ++|++.+.++
T Consensus 93 ~~Vi~~~-~~h~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~~~~lv~v~~~~n~tG~~~~~~~I~~l~~~~ 171 (402)
T TIGR02006 93 NHIITSK-TEHKAVLDTCRYLEREGFEVTYLPPKSNGLIDLEELKAAIRDDTILVSIMHVNNEIGVIQDIAAIGEICRER 171 (402)
T ss_pred CEEEECC-CccHHHHHHHHHHHhcCCEEEEEccCCCCcCCHHHHHHhcCCCCEEEEEECCCcCceecccHHHHHHHHHHc
Confidence 4444443 23333334445555567777776554333467777888776555677776543 333332 5667766665
Q ss_pred CC
Q psy7291 155 PY 156 (158)
Q Consensus 155 ~~ 156 (158)
|.
T Consensus 172 g~ 173 (402)
T TIGR02006 172 KV 173 (402)
T ss_pred CC
Confidence 53
No 118
>PRK11544 hycI hydrogenase 3 maturation protease; Provisional
Probab=64.75 E-value=42 Score=24.14 Aligned_cols=56 Identities=16% Similarity=0.080 Sum_probs=37.4
Q ss_pred cEEEEEechhH----HHHHHHHHHHHhCC-CcEEEEEeccccCCCHHHHHHHHh--CCCeEEEEeCC
Q psy7291 78 DITIVGHSKAV----ETALDAAKILAGQG-IDAEVINLRSLRPLDIETITKSVM--KTNYLISVEGG 137 (158)
Q Consensus 78 ~~~ii~~G~~~----~~a~ea~~~L~~~g-i~~~vi~~~~l~Pld~~~l~~~~~--~~~~vvvvEe~ 137 (158)
+++|+++|+.. .....+++.|++.. -++.+++..+ -|++. ...+. +.+.+++|+--
T Consensus 2 ~~lVlGiGN~L~gDDGvG~~v~~~L~~~~~~~v~vid~gt-~~~~~---~~~i~~~~~d~vIiVDA~ 64 (156)
T PRK11544 2 TDVVLTVGNSMMGDDGAGPLLAEKLAAAPKGGWVVIDGGS-APEND---IVAIRELRPERLLIVDAT 64 (156)
T ss_pred cEEEEEeCccccccCcHHHHHHHHHhccCCCCeEEEECCC-CHHHH---HHHHHhcCCCEEEEEECC
Confidence 36889999866 34566777776543 3588899888 45533 23333 46899999963
No 119
>cd00738 HGTP_anticodon HGTP anticodon binding domain, as found at the C-terminus of histidyl, glycyl, threonyl and prolyl tRNA synthetases, which are classified as a group of class II aminoacyl-tRNA synthetases (aaRS). In aaRSs, the anticodon binding domain is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only. This domain is also found in the accessory subunit of mitochondrial polymerase gamma (Pol gamma b).
Probab=64.56 E-value=33 Score=21.54 Aligned_cols=58 Identities=21% Similarity=0.232 Sum_probs=37.0
Q ss_pred cEEEEEech----hHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHH-HhCCCeEEEEeCCc
Q psy7291 78 DITIVGHSK----AVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKS-VMKTNYLISVEGGW 138 (158)
Q Consensus 78 ~~~ii~~G~----~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~-~~~~~~vvvvEe~~ 138 (158)
+++|+..+. ....+++.+..|+..|+.+.+-. .. +.+... +..+ ..+...++++.+..
T Consensus 3 ~v~ii~~~~~~~~~~~~a~~~~~~Lr~~g~~v~~~~-~~-~~~~k~-~~~a~~~g~~~~iiig~~e 65 (94)
T cd00738 3 DVAIVPLTDPRVEAREYAQKLLNALLANGIRVLYDD-RE-RKIGKK-FREADLRGVPFAVVVGEDE 65 (94)
T ss_pred EEEEEECCCCcHHHHHHHHHHHHHHHHCCCEEEecC-CC-cCHhHH-HHHHHhCCCCEEEEECCCh
Confidence 467777664 45678888889999898776533 22 455544 3333 23557788887644
No 120
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=63.85 E-value=44 Score=22.85 Aligned_cols=72 Identities=18% Similarity=0.101 Sum_probs=47.7
Q ss_pred cEEEEEechhHHH-----HHHHHHHHHhCCCcEEEEEec-cccCCCHHHHHHHHhCC-CeEEEEeCCcCCCChHHHHHHH
Q psy7291 78 DITIVGHSKAVET-----ALDAAKILAGQGIDAEVINLR-SLRPLDIETITKSVMKT-NYLISVEGGWPQCGIGSEISAR 150 (158)
Q Consensus 78 ~~~ii~~G~~~~~-----a~ea~~~L~~~gi~~~vi~~~-~l~Pld~~~l~~~~~~~-~~vvvvEe~~~~GG~g~~i~~~ 150 (158)
.-.++++|..... ..+-++.|.+.|...=++... ++..+|++.+ ++++++ =.++.+-.+.....+.+.+...
T Consensus 43 gElvlttg~~~~~~~~~~~~~~i~~L~~~~~agL~i~~~~~~~~iP~~~i-~~A~~~~lPli~ip~~~~f~~I~~~v~~~ 121 (123)
T PF07905_consen 43 GELVLTTGYALRDDDEEELREFIRELAEKGAAGLGIKTGRYLDEIPEEII-ELADELGLPLIEIPWEVPFSDITREVMRA 121 (123)
T ss_pred CeEEEECCcccCCCCHHHHHHHHHHHHHCCCeEEEEeccCccccCCHHHH-HHHHHcCCCEEEeCCCCCHHHHHHHHHHH
Confidence 3455676655433 556678888888877777665 8888998755 566654 3788888877655555555443
No 121
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=62.96 E-value=23 Score=24.74 Aligned_cols=43 Identities=26% Similarity=0.253 Sum_probs=35.2
Q ss_pred chhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhCC
Q psy7291 85 SKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKT 128 (158)
Q Consensus 85 G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~ 128 (158)
.+.+..+.+|.+.|.+.|+.+..+++.. .|.+.+.+.++++..
T Consensus 7 ~~~C~~C~ka~~~L~~~gi~~~~idi~~-~~~~~~eL~~~l~~~ 49 (131)
T PRK01655 7 SPSCTSCRKAKAWLEEHDIPFTERNIFS-SPLTIDEIKQILRMT 49 (131)
T ss_pred CCCChHHHHHHHHHHHcCCCcEEeeccC-ChhhHHHHHHHHHHh
Confidence 3567888889999999999999999865 788888887777753
No 122
>PRK10824 glutaredoxin-4; Provisional
Probab=62.96 E-value=33 Score=23.57 Aligned_cols=37 Identities=11% Similarity=0.112 Sum_probs=31.7
Q ss_pred CCcEEEEEec----hhHHHHHHHHHHHHhCCCcEEEEEecc
Q psy7291 76 GKDITIVGHS----KAVETALDAAKILAGQGIDAEVINLRS 112 (158)
Q Consensus 76 g~~~~ii~~G----~~~~~a~ea~~~L~~~gi~~~vi~~~~ 112 (158)
..+++|++-| +.+..+..|.+.|.+.|++...+++..
T Consensus 14 ~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~~idi~~ 54 (115)
T PRK10824 14 ENPILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQ 54 (115)
T ss_pred cCCEEEEECCCCCCCCCchHHHHHHHHHHcCCCceEEEecC
Confidence 5789999999 478899999999999999998888754
No 123
>PRK08366 vorA 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=62.94 E-value=11 Score=31.65 Aligned_cols=36 Identities=14% Similarity=0.112 Sum_probs=29.0
Q ss_pred CcccCCHHHHHHHHHHHHh----CCCcEEEEecc-cccccc
Q psy7291 1 VVSPYNSEDAKGLLKAAIR----DPDPVVFLENE-LLYGVQ 36 (158)
Q Consensus 1 V~~P~d~~e~~~~l~~a~~----~~~P~~iR~~~-~~~~~~ 36 (158)
++.|+|.||+.++...|++ ...|++++... +..|..
T Consensus 133 ~~~~~~~QEa~d~t~~Af~lAE~~~~PViv~~Dg~~~sh~~ 173 (390)
T PRK08366 133 QFYAENNQEVYDGVLMAFKVAETVNLPAMVVESAFILSHTY 173 (390)
T ss_pred EEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEecCccccccc
Confidence 4689999999999999997 58899999743 555544
No 124
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=62.27 E-value=35 Score=27.17 Aligned_cols=56 Identities=20% Similarity=0.353 Sum_probs=35.6
Q ss_pred CCCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEecc----------ccCCCHHHHHHHHhCCCeEEE
Q psy7291 75 TGKDITIVGHSKAVETALDAAKILAGQGIDAEVINLRS----------LRPLDIETITKSVMKTNYLIS 133 (158)
Q Consensus 75 ~g~~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~----------l~Pld~~~l~~~~~~~~~vvv 133 (158)
.|+.++|+++|.+...+ ++.|...|.++.+++-.. ..+++.+.+.+.++..+-|+.
T Consensus 150 ~gk~v~IiG~G~iG~av---A~~L~~~G~~V~v~~R~~~~~~~~~~~g~~~~~~~~l~~~l~~aDiVin 215 (287)
T TIGR02853 150 HGSNVMVLGFGRTGMTI---ARTFSALGARVFVGARSSADLARITEMGLIPFPLNKLEEKVAEIDIVIN 215 (287)
T ss_pred CCCEEEEEcChHHHHHH---HHHHHHCCCEEEEEeCCHHHHHHHHHCCCeeecHHHHHHHhccCCEEEE
Confidence 37889999999977654 455666687787776432 234444455666666654443
No 125
>PF04430 DUF498: Protein of unknown function (DUF498/DUF598); InterPro: IPR007523 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This is entry represents an essential factor for the assembly of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I) []. The crystal structure of this protein revealed a 3-layer beta+alpha/beta/alpha topology [].; PDB: 2K2E_A 2Q4Q_B 2AB1_A 2FVT_A 2CYJ_A 1IHN_B 2GM2_A 3CPK_A 2FI9_A.
Probab=62.06 E-value=6.5 Score=26.63 Aligned_cols=36 Identities=22% Similarity=0.337 Sum_probs=23.7
Q ss_pred CCcEEEEEechhHHH-HHHHHHHHHhCCCcEEEEEec
Q psy7291 76 GKDITIVGHSKAVET-ALDAAKILAGQGIDAEVINLR 111 (158)
Q Consensus 76 g~~~~ii~~G~~~~~-a~ea~~~L~~~gi~~~vi~~~ 111 (158)
..|++||++|..... -.+..+.|++.||.+.+.+-.
T Consensus 53 ~pe~liiGtG~~~~~~~~~~~~~l~~~GI~ve~m~T~ 89 (110)
T PF04430_consen 53 KPEVLIIGTGKRQLFLPPELREYLRKKGIGVEVMDTP 89 (110)
T ss_dssp S-SEEEEEETTS-SECTHHHHHHHHTTT-EEEEE-HH
T ss_pred CCcEEEEccCCccccCCHHHHHHHHHcCCeEEEECHH
Confidence 679999999976433 334566788889888877543
No 126
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=61.54 E-value=29 Score=28.52 Aligned_cols=55 Identities=16% Similarity=0.108 Sum_probs=34.2
Q ss_pred CCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHH----HHHhCCCeEEE
Q psy7291 76 GKDITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETIT----KSVMKTNYLIS 133 (158)
Q Consensus 76 g~~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~----~~~~~~~~vvv 133 (158)
+..++||+.|.|...+ ++.|.++|..--.|.-|+..+.+.+.+. .+...++-|++
T Consensus 174 ~k~vLvIGaGem~~l~---a~~L~~~g~~~i~v~nRt~~~~~~~~~~~~~~~~~~~~DvVIs 232 (338)
T PRK00676 174 KASLLFIGYSEINRKV---AYYLQRQGYSRITFCSRQQLTLPYRTVVREELSFQDPYDVIFF 232 (338)
T ss_pred CCEEEEEcccHHHHHH---HHHHHHcCCCEEEEEcCCccccchhhhhhhhhhcccCCCEEEE
Confidence 6899999999998875 4566677865334444554554443322 44456665554
No 127
>PRK08105 flavodoxin; Provisional
Probab=61.31 E-value=44 Score=23.77 Aligned_cols=57 Identities=16% Similarity=0.098 Sum_probs=34.9
Q ss_pred EEEEechhHHHHHHHHHH----HHhCCCcEEEEEeccccCCCHHHHHHHHhCCCeEEEEeCCcCCCCh
Q psy7291 80 TIVGHSKAVETALDAAKI----LAGQGIDAEVINLRSLRPLDIETITKSVMKTNYLISVEGGWPQCGI 143 (158)
Q Consensus 80 ~ii~~G~~~~~a~ea~~~----L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~~~vvvvEe~~~~GG~ 143 (158)
+.|-|||.+..+.+.++. |.+.|+++.++++..+.++. ....+.++++=-.+-.|-.
T Consensus 4 i~I~YgS~tGnte~~A~~l~~~l~~~g~~~~~~~~~~~~~~~-------~~~~~~vi~~~sT~G~Ge~ 64 (149)
T PRK08105 4 VGIFVGTVYGNALLVAEEAEAILTAQGHEVTLFEDPELSDWQ-------PYQDELVLVVTSTTGQGDL 64 (149)
T ss_pred EEEEEEcCchHHHHHHHHHHHHHHhCCCceEEechhhCCchh-------cccCCeEEEEECCCCCCCC
Confidence 456688888887776654 45568888888776543321 1224566666655544544
No 128
>PLN02651 cysteine desulfurase
Probab=61.11 E-value=80 Score=25.49 Aligned_cols=62 Identities=18% Similarity=0.203 Sum_probs=39.4
Q ss_pred HHHHHhCCCcEEEEEeccccCCCHHHHHHHHhCCCeEEEEeC-CcCCCChH--HHHHHHHHcCCC
Q psy7291 95 AKILAGQGIDAEVINLRSLRPLDIETITKSVMKTNYLISVEG-GWPQCGIG--SEISARIMEIPY 156 (158)
Q Consensus 95 ~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~~~vvvvEe-~~~~GG~g--~~i~~~l~~~~~ 156 (158)
...+...|+++..+.+..-..+|.+.+.+.++...+++++.. ++..|-.- .+|++.+.++|+
T Consensus 105 ~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~t~lv~v~~~~n~tG~~~~l~~I~~~~~~~g~ 169 (364)
T PLN02651 105 CRHLQQEGFEVTYLPVKSDGLVDLDELAAAIRPDTALVSVMAVNNEIGVIQPVEEIGELCREKKV 169 (364)
T ss_pred HHHHHhcCCEEEEEccCCCCcCCHHHHHHhcCCCcEEEEEECCCCCceecccHHHHHHHHHHcCC
Confidence 334455677777776543344677888888876566777765 34455442 567777777664
No 129
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=61.08 E-value=81 Score=25.82 Aligned_cols=72 Identities=15% Similarity=0.153 Sum_probs=48.3
Q ss_pred CcEEEEEech-hHHHHHHHHHHHHhCCCc---EEEEEeccccCCCHHH-----HHHHHhCCCeEEEEeCCcCCCChHHHH
Q psy7291 77 KDITIVGHSK-AVETALDAAKILAGQGID---AEVINLRSLRPLDIET-----ITKSVMKTNYLISVEGGWPQCGIGSEI 147 (158)
Q Consensus 77 ~~~~ii~~G~-~~~~a~ea~~~L~~~gi~---~~vi~~~~l~Pld~~~-----l~~~~~~~~~vvvvEe~~~~GG~g~~i 147 (158)
++=+|+++|. ......+|++.+++.|-+ +.+++..+-+|-+.+. |..+-+..+..|-+-+|.. |....+
T Consensus 133 gkPvilStGmatl~Ei~~Av~~i~~~G~~~~~i~llhC~s~YP~~~~~~nL~~I~~Lk~~f~~pVG~SdHt~--G~~~~~ 210 (329)
T TIGR03569 133 GKPVILSTGMATLEEIEAAVGVLRDAGTPDSNITLLHCTTEYPAPFEDVNLNAMDTLKEAFDLPVGYSDHTL--GIEAPI 210 (329)
T ss_pred CCcEEEECCCCCHHHHHHHHHHHHHcCCCcCcEEEEEECCCCCCCcccCCHHHHHHHHHHhCCCEEECCCCc--cHHHHH
Confidence 4557888885 667888999999887753 8888888877866643 3333334555666778883 554444
Q ss_pred HHH
Q psy7291 148 SAR 150 (158)
Q Consensus 148 ~~~ 150 (158)
++.
T Consensus 211 aAv 213 (329)
T TIGR03569 211 AAV 213 (329)
T ss_pred HHH
Confidence 443
No 130
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=60.90 E-value=14 Score=27.24 Aligned_cols=30 Identities=30% Similarity=0.372 Sum_probs=20.6
Q ss_pred CCcEEEEEechhHHHHHHHHHHHHhCCCcEEEE
Q psy7291 76 GKDITIVGHSKAVETALDAAKILAGQGIDAEVI 108 (158)
Q Consensus 76 g~~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi 108 (158)
++.++||+||+... + -+..|++.|+++.+-
T Consensus 4 ~k~IAViGyGsQG~-a--~AlNLrDSG~~V~Vg 33 (165)
T PF07991_consen 4 GKTIAVIGYGSQGH-A--HALNLRDSGVNVIVG 33 (165)
T ss_dssp TSEEEEES-SHHHH-H--HHHHHHHCC-EEEEE
T ss_pred CCEEEEECCChHHH-H--HHHHHHhCCCCEEEE
Confidence 68899999999843 3 245688889877654
No 131
>TIGR00130 frhD coenzyme F420-reducing hydrogenase delta subunit (putative coenzyme F420 hydrogenase processing subunit). FrhD is not part of the active FRH heterotrimer, but is probably a protease required for maturation. Alternative name: 8-hydroxy-5-deazaflavin (F420) reducing hydrogenase (FRH) subunit delta.
Probab=60.21 E-value=29 Score=24.78 Aligned_cols=60 Identities=17% Similarity=0.134 Sum_probs=38.4
Q ss_pred CcEEEEEechhH----HHHHHHHHHHHhC---C-CcEEEEEeccccCCCHHHHHHHHhCCCeEEEEeCC
Q psy7291 77 KDITIVGHSKAV----ETALDAAKILAGQ---G-IDAEVINLRSLRPLDIETITKSVMKTNYLISVEGG 137 (158)
Q Consensus 77 ~~~~ii~~G~~~----~~a~ea~~~L~~~---g-i~~~vi~~~~l~Pld~~~l~~~~~~~~~vvvvEe~ 137 (158)
++++|+++|+.. .....+++.|++. . .++.+++..+.-|-....+. .+.+++.+++|+--
T Consensus 3 ~~ilVlGiGN~l~gDDGvG~~v~~~L~~~~~~~~~~v~vid~gt~~~~~l~~~~-~~~~~d~vIivDA~ 70 (153)
T TIGR00130 3 HEILVVGCGNILFGDDGFGPAVIEYLKENGVEKPDNVCLIDAGTGAPHFVFTLI-PQSKWKKIIVVDIA 70 (153)
T ss_pred ceEEEEEeCccccccCcHhHHHHHHHHHhCCCCCCCeEEEECCCcHHHHHHHHh-hhcCCCEEEEEEcc
Confidence 468999999876 3466778888642 1 24788887764332111111 24678899999974
No 132
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=59.62 E-value=59 Score=22.85 Aligned_cols=66 Identities=17% Similarity=0.165 Sum_probs=44.2
Q ss_pred HHHHHHHHHHhCCCcEEEEE---------eccccCCCHHHHHHHHh------CCCeEEEEeCCcCCCChHHHHHHHHHcC
Q psy7291 90 TALDAAKILAGQGIDAEVIN---------LRSLRPLDIETITKSVM------KTNYLISVEGGWPQCGIGSEISARIMEI 154 (158)
Q Consensus 90 ~a~ea~~~L~~~gi~~~vi~---------~~~l~Pld~~~l~~~~~------~~~~vvvvEe~~~~GG~g~~i~~~l~~~ 154 (158)
..+.++..|.+.||++.-+. +|++-|=+.++ ...+. +-..|+.||.....||+ +.|++.|-++
T Consensus 16 RL~~~~~~L~eagINiRA~tiAdt~dFGIiRmvV~~~d~A-~~~Lee~gF~Vr~~dVlaVEmeD~PG~l-~~I~~vl~d~ 93 (142)
T COG4747 16 RLASVANKLKEAGINIRAFTIADTGDFGIIRMVVDRPDEA-HSVLEEAGFTVRETDVLAVEMEDVPGGL-SRIAEVLGDA 93 (142)
T ss_pred hHHHHHHHHHHcCCceEEEEeccccCcceEEEEcCChHHH-HHHHHHCCcEEEeeeEEEEEecCCCCcH-HHHHHHHhhc
Confidence 34557778888899877664 35555555543 23333 23578999999999999 5567777777
Q ss_pred CCC
Q psy7291 155 PYS 157 (158)
Q Consensus 155 ~~~ 157 (158)
+++
T Consensus 94 diN 96 (142)
T COG4747 94 DIN 96 (142)
T ss_pred CcC
Confidence 654
No 133
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=59.60 E-value=37 Score=20.48 Aligned_cols=68 Identities=15% Similarity=0.137 Sum_probs=41.8
Q ss_pred EEEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHh-CCCeEEEEeCCcCCCChHHHHHHHH
Q psy7291 79 ITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVM-KTNYLISVEGGWPQCGIGSEISARI 151 (158)
Q Consensus 79 ~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~-~~~~vvvvEe~~~~GG~g~~i~~~l 151 (158)
+.|.+ -+.+..+.+|.+.|.+.|+....+++.. .+ ..+.+..... ..=..++++... .||+ .+|.++|
T Consensus 3 v~lys-~~~Cp~C~~ak~~L~~~~i~~~~~~v~~-~~-~~~~~~~~~g~~~vP~ifi~g~~-igg~-~~l~~~l 71 (72)
T cd03029 3 VSLFT-KPGCPFCARAKAALQENGISYEEIPLGK-DI-TGRSLRAVTGAMTVPQVFIDGEL-IGGS-DDLEKYF 71 (72)
T ss_pred EEEEE-CCCCHHHHHHHHHHHHcCCCcEEEECCC-Ch-hHHHHHHHhCCCCcCeEEECCEE-EeCH-HHHHHHh
Confidence 34443 3677888888899999999998888764 22 2333333222 123456777554 6875 5555554
No 134
>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
Probab=59.09 E-value=62 Score=27.20 Aligned_cols=77 Identities=18% Similarity=0.234 Sum_probs=55.0
Q ss_pred EEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhCCCeEEEEe-CCcCCCChH--HHHHHHHHcCCC
Q psy7291 80 TIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKTNYLISVE-GGWPQCGIG--SEISARIMEIPY 156 (158)
Q Consensus 80 ~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~~~vvvvE-e~~~~GG~g--~~i~~~l~~~~~ 156 (158)
=||++-..=..+++.++.|+.+|.+++.+.+..=--+|.+.|++.++..-.+|.+= -|+-.|-+- .+|++.+.++++
T Consensus 93 HIIts~iEH~aVl~~~~~Le~~g~~Vtyl~V~~~G~v~~e~L~~al~~~T~LVSim~aNnE~G~IQpI~ei~~i~k~~~i 172 (386)
T COG1104 93 HIITSAIEHPAVLNTCRYLERQGFEVTYLPVDSNGLVDLEQLEEALRPDTILVSIMHANNETGTIQPIAEIGEICKERGI 172 (386)
T ss_pred eEEEcccccHHHHHHHHHHHhcCCeEEEeCCCCCCeEcHHHHHHhcCCCceEEEEEecccCeeecccHHHHHHHHHHcCC
Confidence 45555555667888999998889999999888766788899999997654444443 244444442 678888887764
No 135
>PRK05967 cystathionine beta-lyase; Provisional
Probab=59.08 E-value=82 Score=26.38 Aligned_cols=54 Identities=15% Similarity=0.096 Sum_probs=35.0
Q ss_pred HHhCCCcEEEEEeccccCCCHHHHHHHHhCCCeEEEEeC-CcCCCChH--HHHHHHHHcCCC
Q psy7291 98 LAGQGIDAEVINLRSLRPLDIETITKSVMKTNYLISVEG-GWPQCGIG--SEISARIMEIPY 156 (158)
Q Consensus 98 L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~~~vvvvEe-~~~~GG~g--~~i~~~l~~~~~ 156 (158)
++..|+.+..++. -+.+.+.+.++..-++|.+|. +++.+..- ..|++...++|.
T Consensus 124 l~~~Gi~v~~vd~-----~~~e~l~~al~~~TklV~lesPsNP~l~v~dl~~I~~la~~~g~ 180 (395)
T PRK05967 124 LKRLGVEVEYYDP-----EIGAGIAKLMRPNTKVVHTEAPGSNTFEMQDIPAIAEAAHRHGA 180 (395)
T ss_pred HHhcCeEEEEeCC-----CCHHHHHHhcCcCceEEEEECCCCCCCcHHHHHHHHHHHHHhCC
Confidence 4455777766643 244668888876668999995 55555544 466777766654
No 136
>TIGR00142 hycI hydrogenase maturation protease HycI. Hydrogenase maturation protease is a protease that is involved in the C-terminal processing of HycE,the large subunit of hydrogenase 3 from E.Coli. This protein seems to be found in E.Coli and in Archaea.
Probab=58.07 E-value=36 Score=24.09 Aligned_cols=54 Identities=15% Similarity=0.170 Sum_probs=34.4
Q ss_pred EEEEechhH----HHHHHHHHHHHhCCC--cEEEEEeccccCCCHHHHHHHHh--CCCeEEEEeCC
Q psy7291 80 TIVGHSKAV----ETALDAAKILAGQGI--DAEVINLRSLRPLDIETITKSVM--KTNYLISVEGG 137 (158)
Q Consensus 80 ~ii~~G~~~----~~a~ea~~~L~~~gi--~~~vi~~~~l~Pld~~~l~~~~~--~~~~vvvvEe~ 137 (158)
+|+++|+.. .....+++.|++... ++.+++..+. |++. ...+. +++.+++|+--
T Consensus 2 lVlGiGN~l~~DDG~G~~v~~~L~~~~~~~~v~v~d~gt~-~~~~---~~~~~~~~~d~viivDA~ 63 (146)
T TIGR00142 2 VLLCVGNELMGDDGAGPYLAEKCAAAPKEENWVVINAGTV-PENF---TVAIRELRPTHILIVDAT 63 (146)
T ss_pred EEEEeCccccccCcHHHHHHHHHHhccCCCCEEEEECCCC-hHHH---HHHHHhcCCCEEEEEECc
Confidence 577888765 235567777766432 4778888775 5433 23333 57889999863
No 137
>PRK06756 flavodoxin; Provisional
Probab=57.91 E-value=62 Score=22.58 Aligned_cols=28 Identities=21% Similarity=0.229 Sum_probs=17.2
Q ss_pred echhHHHHHHHHHHHHhCCCcEEEEEec
Q psy7291 84 HSKAVETALDAAKILAGQGIDAEVINLR 111 (158)
Q Consensus 84 ~G~~~~~a~ea~~~L~~~gi~~~vi~~~ 111 (158)
+|++-..|...++.|++.|+.+.++++.
T Consensus 12 tGnTe~vA~~ia~~l~~~g~~v~~~~~~ 39 (148)
T PRK06756 12 SGNTEEMADHIAGVIRETENEIEVIDIM 39 (148)
T ss_pred CchHHHHHHHHHHHHhhcCCeEEEeehh
Confidence 3444444555556677778888877764
No 138
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.
Probab=57.53 E-value=32 Score=25.95 Aligned_cols=57 Identities=14% Similarity=0.126 Sum_probs=40.1
Q ss_pred EEEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhCC--CeEEEEeCCc
Q psy7291 79 ITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKT--NYLISVEGGW 138 (158)
Q Consensus 79 ~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~--~~vvvvEe~~ 138 (158)
++|++-|.......++++.|++.|+.+-.|-+. ..|.+.|.++.... +.++.+++..
T Consensus 112 villTDG~s~~~~~~~a~~lk~~gv~i~~VgvG---~~~~~~L~~ias~~~~~~~f~~~~~~ 170 (224)
T cd01475 112 GIVVTDGRPQDDVSEVAAKARALGIEMFAVGVG---RADEEELREIASEPLADHVFYVEDFS 170 (224)
T ss_pred EEEEcCCCCcccHHHHHHHHHHCCcEEEEEeCC---cCCHHHHHHHhCCCcHhcEEEeCCHH
Confidence 567888866566777888899888776666554 36788888888643 4677776533
No 139
>PRK05939 hypothetical protein; Provisional
Probab=57.43 E-value=75 Score=26.44 Aligned_cols=54 Identities=19% Similarity=0.346 Sum_probs=34.4
Q ss_pred HHhCCCcEEEEEeccccCCCHHHHHHHHhCCCeEEEEeC-CcCCCChH--HHHHHHHHcCCC
Q psy7291 98 LAGQGIDAEVINLRSLRPLDIETITKSVMKTNYLISVEG-GWPQCGIG--SEISARIMEIPY 156 (158)
Q Consensus 98 L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~~~vvvvEe-~~~~GG~g--~~i~~~l~~~~~ 156 (158)
++..|+.+..+++ .|.+.+.+.+....+++++|. +++.|... ..|++...++|+
T Consensus 106 l~~~G~~v~~v~~-----~d~e~l~~~l~~~tklV~vesp~NptG~v~dl~~I~~la~~~gi 162 (397)
T PRK05939 106 LRGLGVEVTMVDA-----TDVQNVAAAIRPNTRMVFVETIANPGTQVADLAGIGALCRERGL 162 (397)
T ss_pred HHhcCCEEEEECC-----CCHHHHHHhCCCCCeEEEEECCCCCCCCHHhHHHHHHHHHHcCC
Confidence 4445776666653 467778888776567888886 44555553 456666666654
No 140
>TIGR00387 glcD glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.
Probab=57.31 E-value=15 Score=30.71 Aligned_cols=28 Identities=32% Similarity=0.341 Sum_probs=25.0
Q ss_pred CcccCCHHHHHHHHHHHHhCCCcEEEEe
Q psy7291 1 VVSPYNSEDAKGLLKAAIRDPDPVVFLE 28 (158)
Q Consensus 1 V~~P~d~~e~~~~l~~a~~~~~P~~iR~ 28 (158)
|+.|.+.+|+.++++.|.+++-|+.+|-
T Consensus 1 Vv~P~s~eev~~iv~~a~~~~i~v~~~G 28 (413)
T TIGR00387 1 VVFPKNTEQVARILKLCHEHRIPIVPRG 28 (413)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCcEEEEC
Confidence 6789999999999999998888888873
No 141
>COG2241 CobL Precorrin-6B methylase 1 [Coenzyme metabolism]
Probab=57.24 E-value=86 Score=24.02 Aligned_cols=44 Identities=16% Similarity=0.006 Sum_probs=32.0
Q ss_pred ccccCCCHHHHHHHHhCCCeEEEEeCCcCCCChHHHHHHHHHcCCCC
Q psy7291 111 RSLRPLDIETITKSVMKTNYLISVEGGWPQCGIGSEISARIMEIPYS 157 (158)
Q Consensus 111 ~~l~Pld~~~l~~~~~~~~~vvvvEe~~~~GG~g~~i~~~l~~~~~~ 157 (158)
.++.+-+.+.++.++....+++++-+.. -.-.+|+..|.++|++
T Consensus 123 islHgr~~~~l~~~~~~~~~~vil~~~~---~~P~~IA~~L~~~G~~ 166 (210)
T COG2241 123 ISLHGRPVELLRPLLENGRRLVILTPDD---FGPAEIAKLLTENGIG 166 (210)
T ss_pred EEecCCCHHHHHHHHhCCceEEEeCCCC---CCHHHHHHHHHhCCCC
Confidence 3444667777888887777888887655 2237899999999873
No 142
>PRK06703 flavodoxin; Provisional
Probab=57.15 E-value=57 Score=22.87 Aligned_cols=33 Identities=9% Similarity=0.078 Sum_probs=20.0
Q ss_pred EEEEechhHHHHHHHH----HHHHhCCCcEEEEEecc
Q psy7291 80 TIVGHSKAVETALDAA----KILAGQGIDAEVINLRS 112 (158)
Q Consensus 80 ~ii~~G~~~~~a~ea~----~~L~~~gi~~~vi~~~~ 112 (158)
++|.|+|+.....+.+ +.|...|+.+.+.++..
T Consensus 4 v~IiY~S~tGnT~~iA~~ia~~l~~~g~~v~~~~~~~ 40 (151)
T PRK06703 4 ILIAYASMSGNTEDIADLIKVSLDAFDHEVVLQEMDG 40 (151)
T ss_pred EEEEEECCCchHHHHHHHHHHHHHhcCCceEEEehhh
Confidence 4555666555555444 45666677888777654
No 143
>TIGR03235 DNA_S_dndA cysteine desulfurase DndA. This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.
Probab=57.06 E-value=99 Score=24.70 Aligned_cols=62 Identities=13% Similarity=0.194 Sum_probs=36.3
Q ss_pred HHHHHhCCCcEEEEEeccccCCCHHHHHHHHhCCCeEEEEeCCc-CCCChH--HHHHHHHHcCCC
Q psy7291 95 AKILAGQGIDAEVINLRSLRPLDIETITKSVMKTNYLISVEGGW-PQCGIG--SEISARIMEIPY 156 (158)
Q Consensus 95 ~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~~~vvvvEe~~-~~GG~g--~~i~~~l~~~~~ 156 (158)
...++..|+++..+.+..-..+|.+.+.+.++...+++++.... ..|-+- .+|.+...++|.
T Consensus 105 ~~~~~~~G~~v~~v~~~~~~~~d~~~l~~~l~~~~~lv~~~~~~n~tG~~~~~~~I~~l~~~~~~ 169 (353)
T TIGR03235 105 IRALERNGFTVTYLPVDESGRIDVDELADAIRPDTLLVSIMHVNNETGSIQPIREIAEVLEAHEA 169 (353)
T ss_pred HHHHHhcCCEEEEEccCCCCcCCHHHHHHhCCCCCEEEEEEcccCCceeccCHHHHHHHHHHcCC
Confidence 34445557776666554334467777877776545677777533 344332 566666666553
No 144
>PRK11183 D-lactate dehydrogenase; Provisional
Probab=56.58 E-value=63 Score=28.54 Aligned_cols=27 Identities=19% Similarity=0.199 Sum_probs=25.1
Q ss_pred CcccCCHHHHHHHHHHHHhCCCcEEEE
Q psy7291 1 VVSPYNSEDAKGLLKAAIRDPDPVVFL 27 (158)
Q Consensus 1 V~~P~d~~e~~~~l~~a~~~~~P~~iR 27 (158)
|+.|.+.+|+.++++.|.+++-|++-|
T Consensus 42 VV~P~SteEVa~IVklC~e~~vPVIPR 68 (564)
T PRK11183 42 VVFPGTLLELWRVLQACVAADKIIIMQ 68 (564)
T ss_pred EEecCCHHHHHHHHHHHHHcCCeEEEe
Confidence 578999999999999999999999886
No 145
>TIGR03402 FeS_nifS cysteine desulfurase NifS. Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.
Probab=56.45 E-value=1e+02 Score=24.93 Aligned_cols=79 Identities=20% Similarity=0.174 Sum_probs=42.1
Q ss_pred CcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhCCCeEEEEeCCcCCCChH---HHHHHHHHc
Q psy7291 77 KDITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKTNYLISVEGGWPQCGIG---SEISARIME 153 (158)
Q Consensus 77 ~~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~~~vvvvEe~~~~GG~g---~~i~~~l~~ 153 (158)
++.+|++...- .........++..|.++..+.+..-.-+|.+.+.+.++...+++++....-..|.- ++|++...+
T Consensus 86 ~~~vv~~~~~~-~s~~~~~~~~~~~G~~v~~v~~~~~g~~~~~~l~~~i~~~~~lv~i~~~~n~tG~~~~~~~I~~l~~~ 164 (379)
T TIGR03402 86 KRHIITTAVEH-PAVLSLCQHLEKQGYKVTYLPVDEEGRLDLEELRAAITDDTALVSVMWANNETGTIFPIEEIGEIAKE 164 (379)
T ss_pred CCeEEEccccc-HHHHHHHHHHHHcCCEEEEEccCCCCcCCHHHHHHhcCCCcEEEEEEcccCCeeecccHHHHHHHHHH
Confidence 35555544321 22223334455567776666543223367777877776555677776533233332 466777666
Q ss_pred CCC
Q psy7291 154 IPY 156 (158)
Q Consensus 154 ~~~ 156 (158)
+|.
T Consensus 165 ~g~ 167 (379)
T TIGR03402 165 RGA 167 (379)
T ss_pred cCC
Confidence 653
No 146
>COG0543 UbiB 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=56.29 E-value=93 Score=24.11 Aligned_cols=62 Identities=18% Similarity=0.349 Sum_probs=41.5
Q ss_pred CCcEEEEEechhHHHHHHHHHHHHhCC--CcEEEEE-eccccC-CCHHHHHHHHhCCCeEEEEeCCc
Q psy7291 76 GKDITIVGHSKAVETALDAAKILAGQG--IDAEVIN-LRSLRP-LDIETITKSVMKTNYLISVEGGW 138 (158)
Q Consensus 76 g~~~~ii~~G~~~~~a~ea~~~L~~~g--i~~~vi~-~~~l~P-ld~~~l~~~~~~~~~vvvvEe~~ 138 (158)
++.+++|+-|......+..++.+.+.| .++.++- .++-.- +..+.+.++..+ ..+.+++++.
T Consensus 107 ~~~vlliagGtG~aPl~~i~~~~~~~~~~~~V~~~~G~~~~~dl~~~~el~~~~~~-~~~~~~~~~~ 172 (252)
T COG0543 107 GKPVLLIAGGTGIAPLYAIAKELKEKGDANKVTLLYGARTAKDLLLLDELEELAEK-EVHPVTDDGW 172 (252)
T ss_pred CCcEEEEecccCHhHHHHHHHHHHhcCCCceEEEEEeccChhhcccHHHHHHhhcC-cEEEEECCCC
Confidence 445999999999999999999998877 6666664 333222 333455555443 5677776554
No 147
>COG1440 CelA Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism]
Probab=55.79 E-value=40 Score=22.83 Aligned_cols=47 Identities=19% Similarity=0.316 Sum_probs=35.3
Q ss_pred CCcEEEEEechhHHHHHH-HHHHHHhCCCcEEEEEeccccCCCHHHHHHH
Q psy7291 76 GKDITIVGHSKAVETALD-AAKILAGQGIDAEVINLRSLRPLDIETITKS 124 (158)
Q Consensus 76 g~~~~ii~~G~~~~~a~e-a~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~ 124 (158)
..|++++ |+.+...++ ..+.+.+.|+.+.+|+..-.-++|-+.+++.
T Consensus 48 ~~DvvLl--GPQv~y~~~~~~~~~~~~giPV~vI~~~dYG~mnG~kvL~~ 95 (102)
T COG1440 48 NADVVLL--GPQVRYMLKQLKEAAEEKGIPVEVIDMLDYGMMNGEKVLEQ 95 (102)
T ss_pred cCCEEEE--ChHHHHHHHHHHHHhcccCCCeEEeCHHHccCcCcHHHHHH
Confidence 4678777 888887774 4445566789999999999889988765543
No 148
>cd01474 vWA_ATR ATR (Anthrax Toxin Receptor): Anthrax toxin is a key virulence factor for Bacillus anthracis, the causative agent of anthrax. ATR is the cellular receptor for the anthrax protective antigen and facilitates entry of the toxin into cells. The VWA domain in ATR contains the toxin binding site and mediates interaction with protective antigen. The binding is mediated by divalent cations that binds to the MIDAS motif. These proteins are a family of vertebrate ECM receptors expressed by endothelial cells.
Probab=55.03 E-value=24 Score=25.70 Aligned_cols=54 Identities=11% Similarity=0.126 Sum_probs=36.6
Q ss_pred EEEEEechhH----HHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhCCCeEEEEe
Q psy7291 79 ITIVGHSKAV----ETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKTNYLISVE 135 (158)
Q Consensus 79 ~~ii~~G~~~----~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~~~vvvvE 135 (158)
++++|=|... ....++++.+++.|+.+-.|-+ ...+.+.|..+....+.++.+.
T Consensus 107 villTDG~~~~~~~~~~~~~a~~l~~~gv~i~~vgv---~~~~~~~L~~iA~~~~~~f~~~ 164 (185)
T cd01474 107 IIALTDGQLLLNGHKYPEHEAKLSRKLGAIVYCVGV---TDFLKSQLINIADSKEYVFPVT 164 (185)
T ss_pred EEEEcCCCcCCCCCcchHHHHHHHHHcCCEEEEEee---chhhHHHHHHHhCCCCeeEecC
Confidence 6667767652 2345567788888876555544 5678888988888777777443
No 149
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=54.48 E-value=51 Score=20.78 Aligned_cols=54 Identities=20% Similarity=0.241 Sum_probs=36.7
Q ss_pred hhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHH--hCCCeEEEEeCCcC
Q psy7291 86 KAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSV--MKTNYLISVEGGWP 139 (158)
Q Consensus 86 ~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~--~~~~~vvvvEe~~~ 139 (158)
+.+..+..|.+.|.+.|++...+++..-.+-..+...+.. ..+-.+|++.+...
T Consensus 9 ~~CPyC~~ak~~L~~~g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i~~~~i 64 (80)
T COG0695 9 PGCPYCKRAKRLLDRKGVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFIGGKHV 64 (80)
T ss_pred CCCchHHHHHHHHHHcCCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEECCEEE
Confidence 4478888888999999999999998876552332222333 23446788887653
No 150
>PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional
Probab=54.18 E-value=17 Score=29.37 Aligned_cols=26 Identities=23% Similarity=0.059 Sum_probs=23.8
Q ss_pred cccCCHHHHHHHHHHHHhCCCcEEEE
Q psy7291 2 VSPYNSEDAKGLLKAAIRDPDPVVFL 27 (158)
Q Consensus 2 ~~P~d~~e~~~~l~~a~~~~~P~~iR 27 (158)
.+|.|+.|+.+.++.|.+.++|.+|-
T Consensus 182 ~~~~~~~~l~~~i~~A~~~~Gps~I~ 207 (299)
T PRK11865 182 ASIGYPEDFMEKVKKAKEVEGPAYIQ 207 (299)
T ss_pred EeCCCHHHHHHHHHHHHhCCCCEEEE
Confidence 46899999999999999999999984
No 151
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=54.11 E-value=78 Score=23.74 Aligned_cols=33 Identities=30% Similarity=0.324 Sum_probs=25.0
Q ss_pred CCCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEe
Q psy7291 75 TGKDITIVGHSKAVETALDAAKILAGQGIDAEVINL 110 (158)
Q Consensus 75 ~g~~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~ 110 (158)
+|..++||+.|.+... .++.|.+.|.++.|++.
T Consensus 9 ~~k~vLVIGgG~va~~---ka~~Ll~~ga~V~VIs~ 41 (202)
T PRK06718 9 SNKRVVIVGGGKVAGR---RAITLLKYGAHIVVISP 41 (202)
T ss_pred CCCEEEEECCCHHHHH---HHHHHHHCCCeEEEEcC
Confidence 3789999999988654 34556667888999864
No 152
>PRK10569 NAD(P)H-dependent FMN reductase; Provisional
Probab=54.05 E-value=89 Score=23.24 Aligned_cols=61 Identities=18% Similarity=0.281 Sum_probs=40.9
Q ss_pred HHHHHHHHHHhCCCcEEEEEeccccCC----------CHHHHHHHHhCCCeEEEEeCCcCCCChHHHHHHHH
Q psy7291 90 TALDAAKILAGQGIDAEVINLRSLRPL----------DIETITKSVMKTNYLISVEGGWPQCGIGSEISARI 151 (158)
Q Consensus 90 ~a~ea~~~L~~~gi~~~vi~~~~l~Pl----------d~~~l~~~~~~~~~vvvvEe~~~~GG~g~~i~~~l 151 (158)
.+..+.+.+.+.|..++++++.-+.+- +.+.+.+.+..++.||++=--+ .|++...+..++
T Consensus 19 l~~~~~~~l~~~g~ev~~idL~~l~~~~~~~~~~~~~~~~~~~~~i~~AD~iIi~tP~Y-~~s~pg~LKn~i 89 (191)
T PRK10569 19 LLEYAREWLNGLGVEVYHWNLQNFAPEDLLYARFDSPALKTFTEQLAQADGLIVATPVY-KASFSGALKTLL 89 (191)
T ss_pred HHHHHHHHHHhCCCEEEEEEccCCChHHHHhccCCCHHHHHHHHHHHHCCEEEEECCcc-CCCCCHHHHHHH
Confidence 344456678888999999988754331 1124455666778888887766 678777776665
No 153
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=54.05 E-value=51 Score=26.31 Aligned_cols=56 Identities=20% Similarity=0.375 Sum_probs=35.8
Q ss_pred CCCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEeccc----------cCCCHHHHHHHHhCCCeEEE
Q psy7291 75 TGKDITIVGHSKAVETALDAAKILAGQGIDAEVINLRSL----------RPLDIETITKSVMKTNYLIS 133 (158)
Q Consensus 75 ~g~~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l----------~Pld~~~l~~~~~~~~~vvv 133 (158)
.+.+++||++|.+...+ +..|+..|.++.+++-+.- ++.+.+.+.+.+++.+-|+.
T Consensus 151 ~g~kvlViG~G~iG~~~---a~~L~~~Ga~V~v~~r~~~~~~~~~~~G~~~~~~~~l~~~l~~aDiVI~ 216 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTL---ARTLKALGANVTVGARKSAHLARITEMGLSPFHLSELAEEVGKIDIIFN 216 (296)
T ss_pred CCCEEEEECCcHHHHHH---HHHHHHCCCEEEEEECCHHHHHHHHHcCCeeecHHHHHHHhCCCCEEEE
Confidence 37899999999876654 4456666888888876631 22333445566666665544
No 154
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=54.01 E-value=50 Score=26.25 Aligned_cols=75 Identities=16% Similarity=0.146 Sum_probs=49.6
Q ss_pred CCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHH----HhCC-CeEEEEeCCcCCC-ChHHHHHH
Q psy7291 76 GKDITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKS----VMKT-NYLISVEGGWPQC-GIGSEISA 149 (158)
Q Consensus 76 g~~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~----~~~~-~~vvvvEe~~~~G-G~g~~i~~ 149 (158)
|+--+|++.|+.+..+.+.++..++.|.+.-++-.++..+..++.+.+. ++.. -.|+... ..| .+..++..
T Consensus 73 g~~pvi~gv~~~t~~ai~~a~~a~~~Gadav~~~pP~y~~~s~~~i~~~f~~v~~a~~~pvilYn---~~g~~l~~~~~~ 149 (296)
T TIGR03249 73 GKVPVYTGVGGNTSDAIEIARLAEKAGADGYLLLPPYLINGEQEGLYAHVEAVCESTDLGVIVYQ---RDNAVLNADTLE 149 (296)
T ss_pred CCCcEEEecCccHHHHHHHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHhccCCCEEEEe---CCCCCCCHHHHH
Confidence 4445677778777888888888888899888887787777777665443 3333 2566664 233 45666666
Q ss_pred HHHc
Q psy7291 150 RIME 153 (158)
Q Consensus 150 ~l~~ 153 (158)
.|.+
T Consensus 150 ~La~ 153 (296)
T TIGR03249 150 RLAD 153 (296)
T ss_pred HHHh
Confidence 6654
No 155
>cd01472 vWA_collagen von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins. This domain has a variety of functions including: intermolecular adhesion, cell migration, signalling, transcription, and DNA repair. In integrins these domains form heterodimers while in vWF it forms homodimers and multimers. There are different interaction surfaces of this domain as seen by its complexes with collagen with either integrin or human vWFA. In integrins collagen binding occurs via the metal ion-dependent adhesion site (MIDAS) and involves three surface loops located on the upper surface of the molecule. In human vWFA, collagen binding is thought to occur on the bottom of the molecule and does not involve the vestigial MIDAS motif.
Probab=53.98 E-value=52 Score=23.20 Aligned_cols=55 Identities=16% Similarity=0.296 Sum_probs=36.2
Q ss_pred cEEEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhCC--CeEEEEe
Q psy7291 78 DITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKT--NYLISVE 135 (158)
Q Consensus 78 ~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~--~~vvvvE 135 (158)
-++++|=|.......+++..+++.|+.+-.|-+.. -|.+.|..+.... +.++.+.
T Consensus 106 ~iiliTDG~~~~~~~~~~~~l~~~gv~i~~ig~g~---~~~~~L~~ia~~~~~~~~~~~~ 162 (164)
T cd01472 106 VLVVITDGKSQDDVEEPAVELKQAGIEVFAVGVKN---ADEEELKQIASDPKELYVFNVA 162 (164)
T ss_pred EEEEEcCCCCCchHHHHHHHHHHCCCEEEEEECCc---CCHHHHHHHHCCCchheEEecc
Confidence 46777778655445556677888787666554443 3888888887765 4666554
No 156
>cd01482 vWA_collagen_alphaI-XII-like Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=53.21 E-value=61 Score=22.93 Aligned_cols=55 Identities=13% Similarity=0.233 Sum_probs=37.7
Q ss_pred cEEEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhCC--CeEEEEe
Q psy7291 78 DITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKT--NYLISVE 135 (158)
Q Consensus 78 ~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~--~~vvvvE 135 (158)
-++|+|=|.....+.++++.|++.|+.+-.|-+. ..+.+.|.++.+.. .+++.+.
T Consensus 106 ~iillTDG~~~~~~~~~a~~lk~~gi~i~~ig~g---~~~~~~L~~ia~~~~~~~~~~~~ 162 (164)
T cd01482 106 VVILITDGKSQDDVELPARVLRNLGVNVFAVGVK---DADESELKMIASKPSETHVFNVA 162 (164)
T ss_pred EEEEEcCCCCCchHHHHHHHHHHCCCEEEEEecC---cCCHHHHHHHhCCCchheEEEcC
Confidence 3677777766556678889999888876666553 34677888887753 2565554
No 157
>PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional
Probab=52.95 E-value=18 Score=29.22 Aligned_cols=26 Identities=23% Similarity=-0.075 Sum_probs=23.8
Q ss_pred cccCCHHHHHHHHHHHHhCCCcEEEE
Q psy7291 2 VSPYNSEDAKGLLKAAIRDPDPVVFL 27 (158)
Q Consensus 2 ~~P~d~~e~~~~l~~a~~~~~P~~iR 27 (158)
.+|.|+.++.+.+++|++.+||.+|-
T Consensus 178 ~~~~~~~~~~~~i~~A~~~~Gps~I~ 203 (300)
T PRK11864 178 ASIAYPEDFIRKLKKAKEIRGFKFIH 203 (300)
T ss_pred EeCCCHHHHHHHHHHHHhCCCCEEEE
Confidence 47899999999999999999999984
No 158
>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=52.51 E-value=1.1e+02 Score=25.85 Aligned_cols=55 Identities=24% Similarity=0.233 Sum_probs=32.6
Q ss_pred HHhCCCcEEEEEeccccCCCHHHHHHHHhCCCeEEEEeCCc-CCCChH--HHHHHHHHcCCC
Q psy7291 98 LAGQGIDAEVINLRSLRPLDIETITKSVMKTNYLISVEGGW-PQCGIG--SEISARIMEIPY 156 (158)
Q Consensus 98 L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~~~vvvvEe~~-~~GG~g--~~i~~~l~~~~~ 156 (158)
+...|+++..+++. +|.+.+.+.+....++|++|.-. +.+.+- ..|++...++|+
T Consensus 121 l~~~Gi~v~~vd~~----~d~~~l~~~I~~~Tk~I~~e~pgnP~~~v~Di~~I~~iA~~~gi 178 (432)
T PRK06702 121 LRKLGIDVTFFNPN----LTADEIVALANDKTKLVYAESLGNPAMNVLNFKEFSDAAKELEV 178 (432)
T ss_pred HHHCCCEEEEECCC----CCHHHHHHhCCcCCeEEEEEcCCCccccccCHHHHHHHHHHcCC
Confidence 45568877777642 46667877777555666677421 222221 567777766664
No 159
>cd05125 Mth938_2P1-like Mth938_2P1-like domain. This model contains sequences that are similar to 2P1, a partially characterized nuclear protein, which is homologous to E3-3 from rat and known to be alternatively spliced. Its function is unknown. This family is part of the Mth938 family, for which structures, but no functional data are available.
Probab=52.19 E-value=14 Score=25.33 Aligned_cols=35 Identities=20% Similarity=0.392 Sum_probs=25.5
Q ss_pred CCcEEEEEechhHHH-HHHHHHHHHhCCCcEEEEEe
Q psy7291 76 GKDITIVGHSKAVET-ALDAAKILAGQGIDAEVINL 110 (158)
Q Consensus 76 g~~~~ii~~G~~~~~-a~ea~~~L~~~gi~~~vi~~ 110 (158)
+.+++||++|..... --+..+.|+++|+.+.+.+-
T Consensus 54 ~peiliiGtG~~~~~~~~~~~~~l~~~gi~vevm~T 89 (114)
T cd05125 54 RPEILVIGTGRKSRPLSPELRKYFKKLGIAVEVVDT 89 (114)
T ss_pred CCCEEEEccCCCCCcCCHHHHHHHHHcCCEEEEECH
Confidence 578999999985422 33455778888998887753
No 160
>PTZ00062 glutaredoxin; Provisional
Probab=52.12 E-value=65 Score=24.44 Aligned_cols=64 Identities=16% Similarity=0.174 Sum_probs=43.6
Q ss_pred CCcEEEEEec----hhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhC-----CCeEEEEeCCcCCCChHH
Q psy7291 76 GKDITIVGHS----KAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMK-----TNYLISVEGGWPQCGIGS 145 (158)
Q Consensus 76 g~~~~ii~~G----~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~-----~~~vvvvEe~~~~GG~g~ 145 (158)
...++|++-| +.+..+.++.+.|++.|++...+|+.. |.+ +++.+.. +-..+.+.... .||+..
T Consensus 112 ~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~~i~y~~~DI~~----d~~-~~~~l~~~sg~~TvPqVfI~G~~-IGG~d~ 184 (204)
T PTZ00062 112 NHKILLFMKGSKTFPFCRFSNAVVNMLNSSGVKYETYNIFE----DPD-LREELKVYSNWPTYPQLYVNGEL-IGGHDI 184 (204)
T ss_pred cCCEEEEEccCCCCCCChhHHHHHHHHHHcCCCEEEEEcCC----CHH-HHHHHHHHhCCCCCCeEEECCEE-EcChHH
Confidence 5789999998 468999999999999999999988873 332 3333321 22345555433 588743
No 161
>PRK07308 flavodoxin; Validated
Probab=51.83 E-value=79 Score=21.99 Aligned_cols=32 Identities=16% Similarity=0.150 Sum_probs=19.3
Q ss_pred EEechhHHHHHH----HHHHHHhCCCcEEEEEeccc
Q psy7291 82 VGHSKAVETALD----AAKILAGQGIDAEVINLRSL 113 (158)
Q Consensus 82 i~~G~~~~~a~e----a~~~L~~~gi~~~vi~~~~l 113 (158)
|-|+|+.....+ .++.|.+.|+.+.+.++...
T Consensus 6 IvY~S~tGnTe~iA~~ia~~l~~~g~~~~~~~~~~~ 41 (146)
T PRK07308 6 IVYASMTGNTEEIADIVADKLRELGHDVDVDECTTV 41 (146)
T ss_pred EEEECCCchHHHHHHHHHHHHHhCCCceEEEecccC
Confidence 345555544444 44566677888887776543
No 162
>cd03416 CbiX_SirB_N Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), N-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both are found in a wide range of bacteria. This subgroup also contains single domain proteins from archaea and bacteria which may represent the ancestral form of class II chelatases before domain duplication occurred.
Probab=51.81 E-value=64 Score=20.89 Aligned_cols=73 Identities=19% Similarity=0.151 Sum_probs=42.4
Q ss_pred EEEEEechhHHHHHHHH----HHHHhCC--CcEEEEEeccccCCCHHHHHHHHh-CCCeEEEEeCCcCCCChH-HHHHHH
Q psy7291 79 ITIVGHSKAVETALDAA----KILAGQG--IDAEVINLRSLRPLDIETITKSVM-KTNYLISVEGGWPQCGIG-SEISAR 150 (158)
Q Consensus 79 ~~ii~~G~~~~~a~ea~----~~L~~~g--i~~~vi~~~~l~Pld~~~l~~~~~-~~~~vvvvEe~~~~GG~g-~~i~~~ 150 (158)
++|++.|+....+.++. +.+++.. ..+..--+..-.|--++.+.++.+ ++++|+++==....|... ..|.+.
T Consensus 2 ivlv~hGS~~~~~~~~~~~l~~~l~~~~~~~~v~~afle~~~p~~~~~l~~l~~~g~~~v~vvPlfl~~G~h~~~dip~~ 81 (101)
T cd03416 2 LLLVGHGSRDPRAAEALEALAERLRERLPGDEVELAFLELAEPSLAEALDELAAQGATRIVVVPLFLLAGGHVKEDIPAA 81 (101)
T ss_pred EEEEEcCCCCHHHHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCCHHHHHHHHHHcCCCEEEEEeeEeCCCccccccHHHH
Confidence 67899998765444443 3444432 333333333336766777777665 467888887766666643 344444
Q ss_pred H
Q psy7291 151 I 151 (158)
Q Consensus 151 l 151 (158)
+
T Consensus 82 ~ 82 (101)
T cd03416 82 L 82 (101)
T ss_pred H
Confidence 4
No 163
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=51.53 E-value=16 Score=24.71 Aligned_cols=76 Identities=11% Similarity=0.167 Sum_probs=51.1
Q ss_pred CCcEEEEEech----hHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhCCCeEEEEeCCcCCCCh--HHHHHH
Q psy7291 76 GKDITIVGHSK----AVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKTNYLISVEGGWPQCGI--GSEISA 149 (158)
Q Consensus 76 g~~~~ii~~G~----~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~~~vvvvEe~~~~GG~--g~~i~~ 149 (158)
..+++++-=|+ .+....+|++.|...|. +++.++.=|..+.+++-++++...=|+=.-+..|-| |+.|..
T Consensus 14 ~n~VvLFMKGtp~~P~CGFS~~~vqiL~~~g~----v~~~~vnVL~d~eiR~~lk~~s~WPT~PQLyi~GEfvGG~DIv~ 89 (105)
T COG0278 14 ENPVVLFMKGTPEFPQCGFSAQAVQILSACGV----VDFAYVDVLQDPEIRQGLKEYSNWPTFPQLYVNGEFVGGCDIVR 89 (105)
T ss_pred cCceEEEecCCCCCCCCCccHHHHHHHHHcCC----cceeEEeeccCHHHHhccHhhcCCCCCceeeECCEEeccHHHHH
Confidence 34566665554 34445567777877673 444444555567788888888877777777777765 678888
Q ss_pred HHHcCC
Q psy7291 150 RIMEIP 155 (158)
Q Consensus 150 ~l~~~~ 155 (158)
.|.++|
T Consensus 90 Em~q~G 95 (105)
T COG0278 90 EMYQSG 95 (105)
T ss_pred HHHHcc
Confidence 887776
No 164
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=51.43 E-value=70 Score=25.81 Aligned_cols=57 Identities=18% Similarity=0.163 Sum_probs=37.7
Q ss_pred cCCCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCC-------CHHHHHHHHhCCCeEEEE
Q psy7291 74 VTGKDITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPL-------DIETITKSVMKTNYLISV 134 (158)
Q Consensus 74 ~~g~~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pl-------d~~~l~~~~~~~~~vvvv 134 (158)
..|..+.||++|.+...+ ++.|+.-|.++.+++... ++. ....+.++++..+.|++.
T Consensus 134 l~g~tvgIvG~G~IG~~v---A~~l~afG~~V~~~~~~~-~~~~~~~~~~~~~~l~e~l~~aDvvv~~ 197 (312)
T PRK15469 134 REDFTIGILGAGVLGSKV---AQSLQTWGFPLRCWSRSR-KSWPGVQSFAGREELSAFLSQTRVLINL 197 (312)
T ss_pred cCCCEEEEECCCHHHHHH---HHHHHHCCCEEEEEeCCC-CCCCCceeecccccHHHHHhcCCEEEEC
Confidence 457899999999987764 556666688888887432 211 123467778777655543
No 165
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=51.38 E-value=29 Score=22.87 Aligned_cols=30 Identities=30% Similarity=0.414 Sum_probs=17.3
Q ss_pred EEEEEechhHHHHHHHHHHHHhCCCcEEEEEec
Q psy7291 79 ITIVGHSKAVETALDAAKILAGQGIDAEVINLR 111 (158)
Q Consensus 79 ~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~ 111 (158)
++|+++|.+...+ ++.|.+.++++.+++..
T Consensus 1 vvI~G~g~~~~~i---~~~L~~~~~~vvvid~d 30 (116)
T PF02254_consen 1 VVIIGYGRIGREI---AEQLKEGGIDVVVIDRD 30 (116)
T ss_dssp EEEES-SHHHHHH---HHHHHHTTSEEEEEESS
T ss_pred eEEEcCCHHHHHH---HHHHHhCCCEEEEEECC
Confidence 4677777665554 45555555666666543
No 166
>PRK12436 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=51.06 E-value=19 Score=29.01 Aligned_cols=27 Identities=33% Similarity=0.493 Sum_probs=24.6
Q ss_pred CcccCCHHHHHHHHHHHHhCCCcEEEE
Q psy7291 1 VVSPYNSEDAKGLLKAAIRDPDPVVFL 27 (158)
Q Consensus 1 V~~P~d~~e~~~~l~~a~~~~~P~~iR 27 (158)
++.|.+.+|+..++++|.+++-|++++
T Consensus 40 vv~p~~~edv~~~l~~a~~~~ip~~v~ 66 (305)
T PRK12436 40 FVAPTNYDEIQEVIKYANKYNIPVTFL 66 (305)
T ss_pred EEecCCHHHHHHHHHHHHHcCCCEEEE
Confidence 468999999999999999888999997
No 167
>cd03415 CbiX_CbiC Archaeal sirohydrochlorin cobalt chelatase (CbiX) single domain. Proteins in this subgroup contain a single CbiX domain N-terminal to a precorrin-8X methylmutase (CbiC) domain. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, while CbiC catalyzes the conversion of cobalt-precorrin 8 to cobyrinic acid by methyl rearrangement. Both CbiX and CbiC are involved in vitamin B12 biosynthesis.
Probab=50.72 E-value=83 Score=21.87 Aligned_cols=56 Identities=14% Similarity=0.112 Sum_probs=31.5
Q ss_pred EEEEEechhHHHHHHHHHH----HHhC-CCcEEEEEeccccCCCHHHHHHHHh-CCCeEEEE
Q psy7291 79 ITIVGHSKAVETALDAAKI----LAGQ-GIDAEVINLRSLRPLDIETITKSVM-KTNYLISV 134 (158)
Q Consensus 79 ~~ii~~G~~~~~a~ea~~~----L~~~-gi~~~vi~~~~l~Pld~~~l~~~~~-~~~~vvvv 134 (158)
++||+.||--....+.+.. +++. +..+.+=-+-+-.|--.+.+.++.. ++++|+++
T Consensus 3 lllvgHGSR~~~~~~~~~~la~~l~~~~~~~v~~afle~~~P~l~~~l~~l~~~G~~~ivVv 64 (125)
T cd03415 3 IIIITHGSRRNTFNEDMEEWAAYLERKLGVPVYLTYNEYAEPNWRDLLNELLSEGYGHIIIA 64 (125)
T ss_pred EEEEecCCCChHHHHHHHHHHHHHHhccCCceEEEEeecCCCCHHHHHHHHHHCCCCEEEEe
Confidence 6788888876665554443 3322 2333322222335655566777655 56777777
No 168
>cd00248 Mth938-like Mth938-like domain. The members of this family include: Mth938, 2P1, Xcr35, Rpa2829, and several uncharacterized sequences. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. 2P1 is a partially characterized nuclear protein which is homologous to E3-3 from rat and known to be alternately spliced. Xcr35 and Rpa2829 are hypothetical proteins of unknown function from the Xanthomonas campestris and Rhodopseudomonas palustris genomes, respectively, for which the crystal structures have been determined.
Probab=50.29 E-value=13 Score=25.18 Aligned_cols=35 Identities=23% Similarity=0.357 Sum_probs=25.5
Q ss_pred CcEEEEEechhHHH-HHHHHHHHHhCCCcEEEEEec
Q psy7291 77 KDITIVGHSKAVET-ALDAAKILAGQGIDAEVINLR 111 (158)
Q Consensus 77 ~~~~ii~~G~~~~~-a~ea~~~L~~~gi~~~vi~~~ 111 (158)
.+++||++|..... --+..+.|++.|+.+.+.+-.
T Consensus 53 peiliiGTG~~~~~~~~~~~~~l~~~gI~vE~m~T~ 88 (109)
T cd00248 53 PDILLIGTGAEIAFLPRALRAALRAAGIGVEVMSTG 88 (109)
T ss_pred CCEEEEcCCCCCCcCCHHHHHHHHHcCCeEEEeCcH
Confidence 78999999985432 234567788889988877543
No 169
>COG0452 Dfp Phosphopantothenoylcysteine synthetase/decarboxylase [Coenzyme metabolism]
Probab=50.07 E-value=35 Score=28.59 Aligned_cols=45 Identities=18% Similarity=0.359 Sum_probs=36.5
Q ss_pred CCcEEEEEechhH-HHHHHHHHHHHhCCCcEEEE----EeccccCCCHHH
Q psy7291 76 GKDITIVGHSKAV-ETALDAAKILAGQGIDAEVI----NLRSLRPLDIET 120 (158)
Q Consensus 76 g~~~~ii~~G~~~-~~a~ea~~~L~~~gi~~~vi----~~~~l~Pld~~~ 120 (158)
+++++|..+|++. ..+.+.+..|.++|.++.++ ..+++.|++.+.
T Consensus 4 ~k~ill~v~gsiaayk~~~l~r~L~~~ga~v~vvmt~~a~~fv~p~~~~~ 53 (392)
T COG0452 4 GKRILLGVTGSIAAYKSVELVRLLRRSGAEVRVVMTESARKFITPLTFQA 53 (392)
T ss_pred CceEEEEecCchhhhhHHHHHHHHhhCCCeeEEEcchhhhhhcCcccHHH
Confidence 5688888888877 66778889999999999998 367788887654
No 170
>cd06067 H2MP_MemB-H2evol Endopeptidases belonging to membrane-bound hydrogen evolving hydrogenase group. In hydrogenase 3 from E coli, the maturation of the large subunit (HycE) requires the cleavage of a C-terminal peptide by the endopeptidase HycI, before the final formation of the [NiFe] metallocenter. HycI protease is a monomer and lacks characteristic signature motifs of serine, zinc, cysteine, or acid proteases and thus its cleavage reaction is not inhibited by conventional inhibitors of serine and metalloproteases. Such hydrogenases as those from Methanosarcina barkeri (EchCE) and Rhodospirillum rubrum (CooLH) also belong to this group of membrane-bound hydrogen evolving hydrogenase. Sequence comparison of the large subunits from related hydrogenase indicates that in contrast to EchE (358 amino acids) and CooH (361 amino acids), the large subunit HycE (569 amino acids) contains an extra carboxy-terminal stretch of 32 amino acids that is cleaved during the maturation process. In
Probab=49.89 E-value=86 Score=21.82 Aligned_cols=53 Identities=17% Similarity=0.182 Sum_probs=31.9
Q ss_pred EEEechhH----HHHHHHHHHHHhCC-CcEEEEEeccccCCCHHHHHHHHh--CCCeEEEEeCC
Q psy7291 81 IVGHSKAV----ETALDAAKILAGQG-IDAEVINLRSLRPLDIETITKSVM--KTNYLISVEGG 137 (158)
Q Consensus 81 ii~~G~~~----~~a~ea~~~L~~~g-i~~~vi~~~~l~Pld~~~l~~~~~--~~~~vvvvEe~ 137 (158)
|+++|+.. .....+++.|++.. .++.+++..+ -|++ . ...+. +++.+++|+--
T Consensus 2 VlGiGN~L~~DDgvG~~v~~~L~~~~~~~v~vid~gt-~~~~--~-~~~l~~~~~d~vIiVDAv 61 (136)
T cd06067 2 LLGVGNELRGDDGAGPLLAEKLEDLPNPNWLVIDGGT-VPEN--F-TGKIREEKPDLIVIVDAA 61 (136)
T ss_pred EEEeCccccccCcHHHHHHHHHHhcCCCCEEEEECCC-CHHH--H-HHHHHhcCCCEEEEEECC
Confidence 56666644 23455677776542 4578888776 3432 2 23333 67889999863
No 171
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=49.83 E-value=1.1e+02 Score=22.92 Aligned_cols=59 Identities=22% Similarity=0.296 Sum_probs=37.7
Q ss_pred EEEEEechhH--HHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhC-----CCeEEEEeCCc
Q psy7291 79 ITIVGHSKAV--ETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMK-----TNYLISVEGGW 138 (158)
Q Consensus 79 ~~ii~~G~~~--~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~-----~~~vvvvEe~~ 138 (158)
+++++.+... ..+.++++.|+++|+.+.+|.+...-+=. +.|..+.+. ..+++++-.+.
T Consensus 111 vi~v~S~~~~d~~~i~~~~~~lkk~~I~v~vI~~G~~~~~~-~~l~~~~~~~~~~~~s~~~~~~~~~ 176 (187)
T cd01452 111 VAFVGSPIEEDEKDLVKLAKRLKKNNVSVDIINFGEIDDNT-EKLTAFIDAVNGKDGSHLVSVPPGE 176 (187)
T ss_pred EEEEecCCcCCHHHHHHHHHHHHHcCCeEEEEEeCCCCCCH-HHHHHHHHHhcCCCCceEEEeCCCC
Confidence 5556555333 34667889999999999999998763322 233333332 25677776544
No 172
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=49.70 E-value=27 Score=25.84 Aligned_cols=35 Identities=6% Similarity=0.042 Sum_probs=30.5
Q ss_pred HHHHhCCCeEEEEeCCcCCCChHHHHHHHHHcCCC
Q psy7291 122 TKSVMKTNYLISVEGGWPQCGIGSEISARIMEIPY 156 (158)
Q Consensus 122 ~~~~~~~~~vvvvEe~~~~GG~g~~i~~~l~~~~~ 156 (158)
.+.++..++|++|++-..+||--..+.+.+.+.|.
T Consensus 110 ~~~l~~G~rVlIVDDllaTGgT~~a~~~Ll~~~ga 144 (179)
T COG0503 110 KDALKPGDRVLIVDDLLATGGTALALIELLEQAGA 144 (179)
T ss_pred hhhCCCCCEEEEEecchhcChHHHHHHHHHHHCCC
Confidence 45677789999999999999999999999988775
No 173
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=49.70 E-value=40 Score=22.83 Aligned_cols=33 Identities=18% Similarity=0.129 Sum_probs=22.1
Q ss_pred EEEEEechhH--HHHHHHHHHHHhCCCcEEEEEec
Q psy7291 79 ITIVGHSKAV--ETALDAAKILAGQGIDAEVINLR 111 (158)
Q Consensus 79 ~~ii~~G~~~--~~a~ea~~~L~~~gi~~~vi~~~ 111 (158)
++|++.|+.. ...+...+.|+++|++|.+....
T Consensus 1 Ili~~~Gt~Ghv~P~lala~~L~~rGh~V~~~~~~ 35 (139)
T PF03033_consen 1 ILIATGGTRGHVYPFLALARALRRRGHEVRLATPP 35 (139)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEETG
T ss_pred CEEEEcCChhHHHHHHHHHHHHhccCCeEEEeecc
Confidence 4667777643 55677788888889888865443
No 174
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=49.70 E-value=37 Score=23.59 Aligned_cols=31 Identities=26% Similarity=0.481 Sum_probs=23.4
Q ss_pred CCcEEEEEechhHHHHHHHHHHHHhCCCc-EEEEE
Q psy7291 76 GKDITIVGHSKAVETALDAAKILAGQGID-AEVIN 109 (158)
Q Consensus 76 g~~~~ii~~G~~~~~a~ea~~~L~~~gi~-~~vi~ 109 (158)
++.++||+.|.+...+.. .|..+|.+ +.+++
T Consensus 12 ~~~vlviGaGg~ar~v~~---~L~~~g~~~i~i~n 43 (135)
T PF01488_consen 12 GKRVLVIGAGGAARAVAA---ALAALGAKEITIVN 43 (135)
T ss_dssp TSEEEEESSSHHHHHHHH---HHHHTTSSEEEEEE
T ss_pred CCEEEEECCHHHHHHHHH---HHHHcCCCEEEEEE
Confidence 789999999988877644 45556776 77776
No 175
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=49.43 E-value=1e+02 Score=26.71 Aligned_cols=28 Identities=36% Similarity=0.336 Sum_probs=25.3
Q ss_pred CcccCCHHHHHHHHHHHHhCCCcEEEEe
Q psy7291 1 VVSPYNSEDAKGLLKAAIRDPDPVVFLE 28 (158)
Q Consensus 1 V~~P~d~~e~~~~l~~a~~~~~P~~iR~ 28 (158)
|+.|.+.+|+.++++.|.+++-|++.|-
T Consensus 59 Vv~P~s~eeV~~iv~~a~~~~ipv~~rG 86 (499)
T PRK11230 59 VVLPKQMEQVQALLAVCHRLRVPVVARG 86 (499)
T ss_pred EEeeCCHHHHHHHHHHHHHcCCeEEEEC
Confidence 4689999999999999999999999873
No 176
>cd05560 Xcc1710_like Xcc1710_like family, specific to proteobacteria. Xcc1710 is a hypothetical protein from Xanthomonas campestris pv. campestris str. ATCC 33913, similar to Mth938, a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. Their three-dimensional structures have been determined, but their functions are unknown.
Probab=49.41 E-value=18 Score=24.49 Aligned_cols=36 Identities=17% Similarity=0.298 Sum_probs=25.6
Q ss_pred CCcEEEEEechhHHH-HHHHHHHHHhCCCcEEEEEec
Q psy7291 76 GKDITIVGHSKAVET-ALDAAKILAGQGIDAEVINLR 111 (158)
Q Consensus 76 g~~~~ii~~G~~~~~-a~ea~~~L~~~gi~~~vi~~~ 111 (158)
..+++||++|..... --+..+.|+++|+.+.+.+-.
T Consensus 52 ~peiliiGTG~~~~~~~~~~~~~l~~~gi~vE~m~T~ 88 (109)
T cd05560 52 QPEVILLGTGERQRFPPPALLAPLLARGIGVEVMDTQ 88 (109)
T ss_pred CCCEEEEecCCCCCcCCHHHHHHHHHcCCeEEEECHH
Confidence 578999999975432 334456788889888877543
No 177
>TIGR00179 murB UDP-N-acetylenolpyruvoylglucosamine reductase. This model describes MurB, UDP-N-acetylenolpyruvoylglucosamine reductase, which is also called UDP-N-acetylmuramate dehydrogenase. It is part of the pathway for the biosynthesis of the UDP-N-acetylmuramoyl-pentapeptide that is a precursor of bacterial peptidoglycan.
Probab=48.99 E-value=22 Score=28.36 Aligned_cols=27 Identities=26% Similarity=0.475 Sum_probs=24.6
Q ss_pred CcccCCHHHHHHHHHHHHhCCCcEEEE
Q psy7291 1 VVSPYNSEDAKGLLKAAIRDPDPVVFL 27 (158)
Q Consensus 1 V~~P~d~~e~~~~l~~a~~~~~P~~iR 27 (158)
++.|.+.+|+..+++++.+++-|++++
T Consensus 16 ~v~p~s~edl~~~l~~a~~~~~p~~vl 42 (284)
T TIGR00179 16 IVCPESIEQLVNVLDNAKEEDQPLLIL 42 (284)
T ss_pred EEEeCCHHHHHHHHHHHHHcCCCEEEE
Confidence 467999999999999999988999997
No 178
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=48.74 E-value=26 Score=24.14 Aligned_cols=31 Identities=19% Similarity=0.164 Sum_probs=23.2
Q ss_pred cEEEEEechhH-HHHHHHHHHHHhCCCcEEEE
Q psy7291 78 DITIVGHSKAV-ETALDAAKILAGQGIDAEVI 108 (158)
Q Consensus 78 ~~~ii~~G~~~-~~a~ea~~~L~~~gi~~~vi 108 (158)
++++..+|+.. ..+.+.++.|+++|.++.++
T Consensus 2 ~i~l~vtGs~~~~~~~~~l~~L~~~g~~v~vv 33 (129)
T PF02441_consen 2 RILLGVTGSIAAYKAPDLLRRLKRAGWEVRVV 33 (129)
T ss_dssp EEEEEE-SSGGGGGHHHHHHHHHTTTSEEEEE
T ss_pred EEEEEEECHHHHHHHHHHHHHHhhCCCEEEEE
Confidence 46777777643 55788889999999998877
No 179
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=48.57 E-value=79 Score=22.43 Aligned_cols=35 Identities=23% Similarity=0.370 Sum_probs=22.8
Q ss_pred CCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEecc
Q psy7291 76 GKDITIVGHSKAVETALDAAKILAGQGIDAEVINLRS 112 (158)
Q Consensus 76 g~~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~ 112 (158)
|++++|++-+.....- .+..|.++|..+.+.+-++
T Consensus 28 gk~v~VvGrs~~vG~p--la~lL~~~gatV~~~~~~t 62 (140)
T cd05212 28 GKKVLVVGRSGIVGAP--LQCLLQRDGATVYSCDWKT 62 (140)
T ss_pred CCEEEEECCCchHHHH--HHHHHHHCCCEEEEeCCCC
Confidence 7788888666665544 3556667777777776443
No 180
>TIGR03567 FMN_reduc_SsuE FMN reductase, SsuE family. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the homodimeric, NAD(P)H-dependent enzyme SsuE from Escherichia coli, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. It is induced by sulfate starvation. The NADH-dependent enzyme MsuE from Pseudomonas aeruginosa is outside the scope of this model (see model TIGR03566).
Probab=48.51 E-value=1e+02 Score=22.23 Aligned_cols=63 Identities=14% Similarity=0.242 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEeccccC--C------CH--HHHHHHHhCCCeEEEEeCCcCCCChHHHHHHHH
Q psy7291 88 VETALDAAKILAGQGIDAEVINLRSLRP--L------DI--ETITKSVMKTNYLISVEGGWPQCGIGSEISARI 151 (158)
Q Consensus 88 ~~~a~ea~~~L~~~gi~~~vi~~~~l~P--l------d~--~~l~~~~~~~~~vvvvEe~~~~GG~g~~i~~~l 151 (158)
...+..+.+.+.+.|.++.++++.-+.. + +. +.+.+.+...+.||++=--+ .|++...+..++
T Consensus 16 ~~l~~~~~~~l~~~~~~~~~idl~~l~~~~~~~~~~~~~~~~~l~~~i~~AD~iI~~sP~Y-~~sip~~LK~~i 88 (171)
T TIGR03567 16 SALLRHVREALQEQGVEVDHLSVRDLPAEDLLFARFDSPAIKAATAQVAQADGVVVATPVY-KASYSGVLKALL 88 (171)
T ss_pred HHHHHHHHHHHHHCCCeEEEEEecCCChHHhhhcCCCCHHHHHHHHHHHHCCEEEEECCcc-cCCCCHHHHHHH
Confidence 3444555667777788888888764321 1 11 23455566677788877666 688887777666
No 181
>PRK09004 FMN-binding protein MioC; Provisional
Probab=48.49 E-value=95 Score=21.93 Aligned_cols=55 Identities=11% Similarity=0.080 Sum_probs=34.7
Q ss_pred EEEEechhHHHHHHHHHHH----HhCCCcEEEEEeccccCCCHHHHHHHHhCCCeEEEEeCCcCCCCh
Q psy7291 80 TIVGHSKAVETALDAAKIL----AGQGIDAEVINLRSLRPLDIETITKSVMKTNYLISVEGGWPQCGI 143 (158)
Q Consensus 80 ~ii~~G~~~~~a~ea~~~L----~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~~~vvvvEe~~~~GG~ 143 (158)
+.|-|||.+..+.+.++.| .+.|.++.+++... +.+ +...+.++++=-.+-.|-+
T Consensus 4 i~I~ygS~tGnae~~A~~l~~~~~~~g~~~~~~~~~~--------~~~-l~~~~~li~~~sT~G~Ge~ 62 (146)
T PRK09004 4 ITLISGSTLGGAEYVADHLAEKLEEAGFSTETLHGPL--------LDD-LSASGLWLIVTSTHGAGDL 62 (146)
T ss_pred EEEEEEcCchHHHHHHHHHHHHHHHcCCceEEeccCC--------HHH-hccCCeEEEEECCCCCCCC
Confidence 3455888888877776554 55688888876421 223 3456777777766645544
No 182
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=48.43 E-value=24 Score=25.75 Aligned_cols=57 Identities=12% Similarity=0.190 Sum_probs=35.9
Q ss_pred CCCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccC-------CCHHHHHHHHhCCCeEEEE
Q psy7291 75 TGKDITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRP-------LDIETITKSVMKTNYLISV 134 (158)
Q Consensus 75 ~g~~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~P-------ld~~~l~~~~~~~~~vvvv 134 (158)
.|..+.||++|.+...+ ++.|+.-|.++-.++...-.+ +....+.++++..+.|++.
T Consensus 35 ~g~tvgIiG~G~IG~~v---A~~l~~fG~~V~~~d~~~~~~~~~~~~~~~~~~l~ell~~aDiv~~~ 98 (178)
T PF02826_consen 35 RGKTVGIIGYGRIGRAV---ARRLKAFGMRVIGYDRSPKPEEGADEFGVEYVSLDELLAQADIVSLH 98 (178)
T ss_dssp TTSEEEEESTSHHHHHH---HHHHHHTT-EEEEEESSCHHHHHHHHTTEEESSHHHHHHH-SEEEE-
T ss_pred CCCEEEEEEEcCCcCeE---eeeeecCCceeEEecccCChhhhcccccceeeehhhhcchhhhhhhh
Confidence 37899999999988764 556666688887777665321 1123467777776654443
No 183
>PRK08133 O-succinylhomoserine sulfhydrylase; Validated
Probab=48.14 E-value=1.5e+02 Score=24.48 Aligned_cols=39 Identities=13% Similarity=0.164 Sum_probs=21.1
Q ss_pred CHHHHHHHHhCCCeEEEEeC-CcCCCChH--HHHHHHHHcCC
Q psy7291 117 DIETITKSVMKTNYLISVEG-GWPQCGIG--SEISARIMEIP 155 (158)
Q Consensus 117 d~~~l~~~~~~~~~vvvvEe-~~~~GG~g--~~i~~~l~~~~ 155 (158)
|.+.+.+.+....++|++|. +++.|-.. .+|++...++|
T Consensus 135 d~~~l~~~i~~~tklV~ie~p~NptG~v~dl~~I~~la~~~g 176 (390)
T PRK08133 135 DLDAWRAAVRPNTKLFFLETPSNPLTELADIAALAEIAHAAG 176 (390)
T ss_pred CHHHHHHhcCcCCeEEEEECCCCCCCCcCCHHHHHHHHHHcC
Confidence 55666666655446677764 33444332 45555555554
No 184
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=47.86 E-value=1.2e+02 Score=24.91 Aligned_cols=25 Identities=12% Similarity=0.178 Sum_probs=20.4
Q ss_pred CCeEEEEeCCcCCCChHHHHHHHHHcCCC
Q psy7291 128 TNYLISVEGGWPQCGIGSEISARIMEIPY 156 (158)
Q Consensus 128 ~~~vvvvEe~~~~GG~g~~i~~~l~~~~~ 156 (158)
..+|+++ -.||+|+.++..|...|.
T Consensus 135 ~~~Vlvv----G~GG~Gs~ia~~La~~Gv 159 (376)
T PRK08762 135 EARVLLI----GAGGLGSPAALYLAAAGV 159 (376)
T ss_pred cCcEEEE----CCCHHHHHHHHHHHHcCC
Confidence 3467777 359999999999999886
No 185
>PF00975 Thioesterase: Thioesterase domain; InterPro: IPR001031 Thioesterase domains often occur integrated in or associated with peptide synthetases which are involved in the non-ribosomal synthesis of peptide antibiotics []. Thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates.; GO: 0016788 hydrolase activity, acting on ester bonds, 0009058 biosynthetic process; PDB: 2RON_A 2K2Q_B 3LCR_B 2HFJ_B 1MNQ_A 1MN6_B 1MNA_B 2HFK_B 2H7Y_B 2H7X_A ....
Probab=47.53 E-value=52 Score=24.25 Aligned_cols=30 Identities=20% Similarity=0.200 Sum_probs=26.3
Q ss_pred CcEEEEEechhHHHHHHHHHHHHhCCCcEE
Q psy7291 77 KDITIVGHSKAVETALDAAKILAGQGIDAE 106 (158)
Q Consensus 77 ~~~~ii~~G~~~~~a~ea~~~L~~~gi~~~ 106 (158)
+.+.|++|-.....|.|.+++|+++|..+.
T Consensus 66 gp~~L~G~S~Gg~lA~E~A~~Le~~G~~v~ 95 (229)
T PF00975_consen 66 GPYVLAGWSFGGILAFEMARQLEEAGEEVS 95 (229)
T ss_dssp SSEEEEEETHHHHHHHHHHHHHHHTT-SES
T ss_pred CCeeehccCccHHHHHHHHHHHHHhhhccC
Confidence 489999999999999999999999998764
No 186
>PRK08114 cystathionine beta-lyase; Provisional
Probab=47.24 E-value=71 Score=26.76 Aligned_cols=55 Identities=20% Similarity=0.235 Sum_probs=36.0
Q ss_pred HHHHhCCCcEEEEEeccccCCCHHHHHHHHhCCCeEEEEeCCc-CCCChH--HHHHHHHHcCC
Q psy7291 96 KILAGQGIDAEVINLRSLRPLDIETITKSVMKTNYLISVEGGW-PQCGIG--SEISARIMEIP 155 (158)
Q Consensus 96 ~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~~~vvvvEe~~-~~GG~g--~~i~~~l~~~~ 155 (158)
+.|++.|+++..++ +.|.+.+.+.++...++|.+|--. +.|-+- ..|++...++|
T Consensus 120 ~~l~~~Gi~v~~vd-----~~d~~~l~~~l~~~TrlV~~EtpsNp~~~v~DI~~Ia~ia~~~g 177 (395)
T PRK08114 120 KILSKLGVTTTWFD-----PLIGADIAKLIQPNTKVVFLESPGSITMEVHDVPAIVAAVRSVN 177 (395)
T ss_pred HHHHhcCcEEEEEC-----CCCHHHHHHhcCCCceEEEEECCCCCCCEeecHHHHHHHHHHhC
Confidence 34566688777766 457777888887656899999633 233332 46777776654
No 187
>PRK13905 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=47.09 E-value=25 Score=28.15 Aligned_cols=28 Identities=32% Similarity=0.428 Sum_probs=24.7
Q ss_pred CcccCCHHHHHHHHHHHHhCCCcEEEEe
Q psy7291 1 VVSPYNSEDAKGLLKAAIRDPDPVVFLE 28 (158)
Q Consensus 1 V~~P~d~~e~~~~l~~a~~~~~P~~iR~ 28 (158)
++.|.+.+|+.++++++.+++-|+.+|-
T Consensus 34 vv~P~s~edv~~~v~~a~~~~~p~~v~G 61 (298)
T PRK13905 34 LVEPADIEDLQEFLKLLKENNIPVTVLG 61 (298)
T ss_pred EEeCCCHHHHHHHHHHHHHcCCCEEEEe
Confidence 4679999999999999988888999973
No 188
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=46.85 E-value=72 Score=24.28 Aligned_cols=46 Identities=22% Similarity=0.280 Sum_probs=36.7
Q ss_pred EEEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHH
Q psy7291 79 ITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKS 124 (158)
Q Consensus 79 ~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~ 124 (158)
.++++.|....-.+-|++.|...|..++|+-+.--.+...+.....
T Consensus 53 ~vlcG~GnNGGDG~VaAR~L~~~G~~V~v~~~~~~~~~~~~~a~~~ 98 (203)
T COG0062 53 LVLCGPGNNGGDGLVAARHLKAAGYAVTVLLLGDPKKLKTEAARAN 98 (203)
T ss_pred EEEECCCCccHHHHHHHHHHHhCCCceEEEEeCCCCCccHHHHHHH
Confidence 4556778888899999999999999999998887777777654444
No 189
>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase. Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.
Probab=46.77 E-value=1.5e+02 Score=23.74 Aligned_cols=48 Identities=13% Similarity=0.169 Sum_probs=22.3
Q ss_pred CCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHh
Q psy7291 76 GKDITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVM 126 (158)
Q Consensus 76 g~~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~ 126 (158)
+.++++++.|......... .+..|.++..+....-..+|.+.+.+.++
T Consensus 78 ~~~vlv~~~~~~~~~~~~~---a~~~g~~~~~v~~~~~~~~d~~~l~~~l~ 125 (363)
T TIGR02326 78 DGKLLVVINGAYGARIVQI---AEYLGIPHHVVDTGEVEPPDVVEVEAILA 125 (363)
T ss_pred CCeEEEEeCChhhHHHHHH---HHHcCCceEEEeCCCCCCCCHHHHHHHHh
Confidence 4455555555443322122 22335555555544333455555555554
No 190
>PF12500 TRSP: TRSP domain C terminus to PRTase_2 ; InterPro: IPR022537 This domain is found in bacteria, and is typically between 174 and 217 amino acids in length. There is a conserved TRSP sequence motif.
Probab=46.58 E-value=49 Score=24.09 Aligned_cols=32 Identities=22% Similarity=0.315 Sum_probs=26.8
Q ss_pred CCcEEEEEechhHHHHHHHHHHHHhCCCcEEE
Q psy7291 76 GKDITIVGHSKAVETALDAAKILAGQGIDAEV 107 (158)
Q Consensus 76 g~~~~ii~~G~~~~~a~ea~~~L~~~gi~~~v 107 (158)
+.+++++++|......+..++.|.++|.++.+
T Consensus 57 ~~~vLVLGTgEfMy~Pl~lA~~Le~~g~~V~~ 88 (155)
T PF12500_consen 57 GERVLVLGTGEFMYLPLLLAEELEQAGADVRY 88 (155)
T ss_pred CCcEEEEccchHHHHHHHHHHHHHhcCCceEE
Confidence 78999999999888888889999998755443
No 191
>TIGR01755 flav_wrbA NAD(P)H:quinone oxidoreductase, type IV. This model represents a protein, WrbA, related to and slightly larger than flavodoxin. It was just shown, in E. coli and Archaeoglobus fulgidus (and previously for some eukaryotic homologs) to act as fourth type of NAD(P)H:quinone oxidoreductase. In E. coli, this protein was earlier reported to be produced during stationary phase, bind to the trp repressor, and make trp operon repression more efficient. WrbA does not interact with the trp operator by itself. Members are found in species in which homologs of the E. coli trp operon repressor TrpR are not detected.
Probab=46.43 E-value=1.2e+02 Score=22.51 Aligned_cols=68 Identities=10% Similarity=-0.016 Sum_probs=41.9
Q ss_pred echhHHHHHHHHHHHHhC-CCcEEEEEeccccCCCHHHH---------------HHHHhCCCeEEEEeCCcCCCChHHHH
Q psy7291 84 HSKAVETALDAAKILAGQ-GIDAEVINLRSLRPLDIETI---------------TKSVMKTNYLISVEGGWPQCGIGSEI 147 (158)
Q Consensus 84 ~G~~~~~a~ea~~~L~~~-gi~~~vi~~~~l~Pld~~~l---------------~~~~~~~~~vvvvEe~~~~GG~g~~i 147 (158)
+|++...|..+++.+++. |..+.+++++-.. +.+.+ .+.+..++.|++-=-.+ .|.+...+
T Consensus 11 ~G~T~~lA~~ia~g~~~~~g~ev~~~~v~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~GSPty-~g~~~~~l 87 (197)
T TIGR01755 11 YGHIETMARAVAEGAREVDGAEVVVKRVPETV--PEEVAEKSHGKTDQTAPVATPQELADYDAIIFGTPTR-FGNMASQM 87 (197)
T ss_pred CCHHHHHHHHHHHHHHhcCCCEEEEEeccccC--cHHHHHhccCCcccCCccCCHHHHHHCCEEEEEeccc-ccCccHHH
Confidence 344555566666677664 8889998876432 22211 13345667676666554 68888888
Q ss_pred HHHHHcC
Q psy7291 148 SARIMEI 154 (158)
Q Consensus 148 ~~~l~~~ 154 (158)
..++...
T Consensus 88 k~fld~~ 94 (197)
T TIGR01755 88 RNFLDQT 94 (197)
T ss_pred HHHHHhc
Confidence 7777654
No 192
>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=46.27 E-value=27 Score=27.90 Aligned_cols=24 Identities=25% Similarity=0.308 Sum_probs=22.4
Q ss_pred cCCHHHHHHHHHHHHhCCCcEEEE
Q psy7291 4 PYNSEDAKGLLKAAIRDPDPVVFL 27 (158)
Q Consensus 4 P~d~~e~~~~l~~a~~~~~P~~iR 27 (158)
+.++.|+.+.++.|+++++|.+|-
T Consensus 166 ~~~~~~l~~~i~~Al~~~Gp~lIe 189 (280)
T PRK11869 166 SGDIEETKEILKEAIKHKGLAIVD 189 (280)
T ss_pred CCCHHHHHHHHHHHHhCCCCEEEE
Confidence 789999999999999999999983
No 193
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=46.22 E-value=82 Score=25.81 Aligned_cols=31 Identities=29% Similarity=0.350 Sum_probs=22.7
Q ss_pred CCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEE
Q psy7291 76 GKDITIVGHSKAVETALDAAKILAGQGIDAEVIN 109 (158)
Q Consensus 76 g~~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~ 109 (158)
+..++||++|++.... +..|...|+++.+.+
T Consensus 17 gktIgIIG~GsmG~Al---A~~L~~sG~~Vvv~~ 47 (330)
T PRK05479 17 GKKVAIIGYGSQGHAH---ALNLRDSGVDVVVGL 47 (330)
T ss_pred CCEEEEEeeHHHHHHH---HHHHHHCCCEEEEEE
Confidence 6789999999988754 345666788766543
No 194
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=45.99 E-value=87 Score=25.13 Aligned_cols=50 Identities=18% Similarity=0.423 Sum_probs=33.1
Q ss_pred cCCCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhCCCeE
Q psy7291 74 VTGKDITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKTNYL 131 (158)
Q Consensus 74 ~~g~~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~~~v 131 (158)
..|++++||+.|..+..-+ +..|.++|..+++.+-++ ..+.+.++..+-|
T Consensus 156 l~Gk~vvVIGrs~~VG~pl--a~lL~~~gatVtv~~s~t------~~l~~~~~~ADIV 205 (286)
T PRK14175 156 LEGKNAVVIGRSHIVGQPV--SKLLLQKNASVTILHSRS------KDMASYLKDADVI 205 (286)
T ss_pred CCCCEEEEECCCchhHHHH--HHHHHHCCCeEEEEeCCc------hhHHHHHhhCCEE
Confidence 3489999999998766653 456667788888887654 2244555554433
No 195
>PRK14652 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=45.92 E-value=26 Score=28.22 Aligned_cols=27 Identities=26% Similarity=0.383 Sum_probs=24.4
Q ss_pred CcccCCHHHHHHHHHHHHhCCCcEEEE
Q psy7291 1 VVSPYNSEDAKGLLKAAIRDPDPVVFL 27 (158)
Q Consensus 1 V~~P~d~~e~~~~l~~a~~~~~P~~iR 27 (158)
++.|.|.+|+..+++++-+++-|++++
T Consensus 39 ~v~p~~~edl~~~v~~a~~~~ip~~vl 65 (302)
T PRK14652 39 LVRPADPDALSALLRAVRELGVPLSIL 65 (302)
T ss_pred EEEcCCHHHHHHHHHHHHHCCCcEEEE
Confidence 367999999999999999888999996
No 196
>PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed
Probab=45.84 E-value=1.7e+02 Score=24.30 Aligned_cols=41 Identities=15% Similarity=0.159 Sum_probs=22.4
Q ss_pred CCCHHHHHHHHhCCCeEEEEeC-CcCCCChH--HHHHHHHHcCC
Q psy7291 115 PLDIETITKSVMKTNYLISVEG-GWPQCGIG--SEISARIMEIP 155 (158)
Q Consensus 115 Pld~~~l~~~~~~~~~vvvvEe-~~~~GG~g--~~i~~~l~~~~ 155 (158)
.+|.+.+.+.+....++|++|. +++.|..- ..|.+...++|
T Consensus 137 ~~d~e~l~~ai~~~tklV~lesp~NptG~v~dl~~I~~la~~~g 180 (398)
T PRK07504 137 GLDLDNWEKAVRPNTKVFFLESPTNPTLEVIDIAAVAKIANQAG 180 (398)
T ss_pred CCCHHHHHHhcCcCceEEEEECCCCCCcEecCHHHHHHHHHHcC
Confidence 3566666666654445666666 33444432 45555555554
No 197
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=45.68 E-value=86 Score=26.23 Aligned_cols=55 Identities=25% Similarity=0.248 Sum_probs=40.6
Q ss_pred cEEEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccC------------C-CHHHHHHHHhCCCeEEEEeC
Q psy7291 78 DITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRP------------L-DIETITKSVMKTNYLISVEG 136 (158)
Q Consensus 78 ~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~P------------l-d~~~l~~~~~~~~~vvvvEe 136 (158)
.+.||+-|........|+..| |+++.++++.-=.| + |.+.+++++.++ .|+|.|=
T Consensus 3 tvgIlGGGQLgrMm~~aa~~l---G~~v~vLdp~~~~PA~~va~~~i~~~~dD~~al~ela~~~-DViT~Ef 70 (375)
T COG0026 3 TVGILGGGQLGRMMALAAARL---GIKVIVLDPDADAPAAQVADRVIVAAYDDPEALRELAAKC-DVITYEF 70 (375)
T ss_pred eEEEEcCcHHHHHHHHHHHhc---CCEEEEecCCCCCchhhcccceeecCCCCHHHHHHHHhhC-CEEEEee
Confidence 588999998887777777766 88888887543222 2 356789998876 4899984
No 198
>cd06064 H2MP_F420-Reduc Endopeptidases belonging to F420-reducing hydrogenases group. These hydrogenases from methanogens are encoded by the fru, frc, or frh genes. Sequence comparison indicates that fruD and frcD gene products from Methanococcus voltae are similar to HycI protease of Escherichia coli and are putatively involved in the C-terminal processing of large subunits (FruA and FrcA respectively). FrhD (F420 reducing hydrogenase delta subunit) enzyme belongs to the gene cluster of 8-hydroxy-5-deazaflavin (F420) reducing hydrogenase (FRH) from the thermophilic methanogen Methanobacterium thermoautotrophicum delta H. FrhD subunit is putatively involved in the processing of the coenzyme F420 hydrogenase-processing. It is similar to those frhD genes found in Methanomicrobia and Methanobacteria. It is different from the FrhD conserved domain found in methyl viologen-reducing hydrogenase and F420-non-reducing hydrogenase iron-sulfur subunit D.
Probab=45.64 E-value=43 Score=23.77 Aligned_cols=57 Identities=18% Similarity=0.172 Sum_probs=30.5
Q ss_pred EEEechhH----HHHHHHHHHHHhCCC---cEEEEEeccccCCCHHHHHHHHhCCCeEEEEeCC
Q psy7291 81 IVGHSKAV----ETALDAAKILAGQGI---DAEVINLRSLRPLDIETITKSVMKTNYLISVEGG 137 (158)
Q Consensus 81 ii~~G~~~----~~a~ea~~~L~~~gi---~~~vi~~~~l~Pld~~~l~~~~~~~~~vvvvEe~ 137 (158)
|+++|+.. .....+++.|++... ++.+++..+.-|=....+.+..++++.|++|+--
T Consensus 2 ViGiGN~l~gDDgvG~~va~~l~~~~~~~~~v~vid~g~~~~~~~~~~~~~~~~~d~viivDA~ 65 (150)
T cd06064 2 VVGCGNILFGDDGFGPAVIEELEKLELLPDNVQVIDAGTGAPHLLFTLLDEESKPKKIIIVDAI 65 (150)
T ss_pred EEEECCcccccCcHHHHHHHHHHhccCCCCCEEEEECCCcHHHHHHHHHhccCCCCEEEEEEec
Confidence 56666654 235566777765432 3677776663221101112222347888888874
No 199
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=45.42 E-value=1.8e+02 Score=25.67 Aligned_cols=59 Identities=15% Similarity=0.133 Sum_probs=40.5
Q ss_pred CCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEecc-------------ccCCCHHHHHHHHhCCCeEEEEeCCc
Q psy7291 76 GKDITIVGHSKAVETALDAAKILAGQGIDAEVINLRS-------------LRPLDIETITKSVMKTNYLISVEGGW 138 (158)
Q Consensus 76 g~~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~-------------l~Pld~~~l~~~~~~~~~vvvvEe~~ 138 (158)
.+.+.||+-|.......+++.+| |+++-+++..- ....|.+.+.+++++. .++++|...
T Consensus 22 ~k~IgIIGgGqlg~mla~aA~~l---G~~Vi~ld~~~~apa~~~AD~~~v~~~~D~~~l~~~a~~~-dvIt~e~e~ 93 (577)
T PLN02948 22 ETVVGVLGGGQLGRMLCQAASQM---GIKVKVLDPLEDCPASSVAARHVVGSFDDRAAVREFAKRC-DVLTVEIEH 93 (577)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC---CCEEEEEeCCCCCchhhhCceeeeCCCCCHHHHHHHHHHC-CEEEEecCC
Confidence 56799999998777766666654 88888776532 1234566788888775 477777444
No 200
>cd01480 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=45.11 E-value=72 Score=23.21 Aligned_cols=56 Identities=11% Similarity=0.074 Sum_probs=36.7
Q ss_pred CcEEEEEechh----HHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhCCCeEEEEe
Q psy7291 77 KDITIVGHSKA----VETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKTNYLISVE 135 (158)
Q Consensus 77 ~~~~ii~~G~~----~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~~~vvvvE 135 (158)
+-++++|=|.. .....++++.+++.|+.+-.|-+ .+.+.+.|.++....+..+.++
T Consensus 111 ~~iillTDG~~~~~~~~~~~~~~~~~~~~gi~i~~vgi---g~~~~~~L~~IA~~~~~~~~~~ 170 (186)
T cd01480 111 KFLLVITDGHSDGSPDGGIEKAVNEADHLGIKIFFVAV---GSQNEEPLSRIACDGKSALYRE 170 (186)
T ss_pred eEEEEEeCCCcCCCcchhHHHHHHHHHHCCCEEEEEec---CccchHHHHHHHcCCcchhhhc
Confidence 45666777853 23455677888888887666654 4478888888877655444444
No 201
>PRK02948 cysteine desulfurase; Provisional
Probab=45.03 E-value=1.6e+02 Score=23.70 Aligned_cols=60 Identities=17% Similarity=0.197 Sum_probs=37.7
Q ss_pred HHHHhCCCcEEEEEeccccCCCHHHHHHHHhCCCeEEEEeCC-cCCCChH--HHHHHHHHcCC
Q psy7291 96 KILAGQGIDAEVINLRSLRPLDIETITKSVMKTNYLISVEGG-WPQCGIG--SEISARIMEIP 155 (158)
Q Consensus 96 ~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~~~vvvvEe~-~~~GG~g--~~i~~~l~~~~ 155 (158)
+.++..|.++..+.+..-.-+|.+.+.+.++...+++++... +..|-+- ++|.+...++|
T Consensus 106 ~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~~~~lv~~~~~~n~tG~~~~~~~I~~l~~~~~ 168 (381)
T PRK02948 106 QSLESQGYTVTEIPVDKSGLIRLVDLERAITPDTVLASIQHANSEIGTIQPIAEIGALLKKYN 168 (381)
T ss_pred HHHHhCCCEEEEEeeCCCCCCCHHHHHHhcCCCCEEEEEECCcCCcEeehhHHHHHHHHHHcC
Confidence 344555777777766544456777787777655567888764 4555543 45666666554
No 202
>PLN02757 sirohydrochlorine ferrochelatase
Probab=44.77 E-value=99 Score=22.28 Aligned_cols=68 Identities=9% Similarity=0.028 Sum_probs=39.2
Q ss_pred CCcEEEEEechhHHHHHHHHH----HHHhCCCcEEEEEeccc---cCCCHHHHHHHHh-CCCeEEEEeCCcCCCChH
Q psy7291 76 GKDITIVGHSKAVETALDAAK----ILAGQGIDAEVINLRSL---RPLDIETITKSVM-KTNYLISVEGGWPQCGIG 144 (158)
Q Consensus 76 g~~~~ii~~G~~~~~a~ea~~----~L~~~gi~~~vi~~~~l---~Pld~~~l~~~~~-~~~~vvvvEe~~~~GG~g 144 (158)
...++||+-||--..+.+.++ .++++ .....+...|+ .|-=.+.+.++.+ +.++|+++==-...|+.-
T Consensus 13 ~~~lllvgHGSrd~~a~~~~~~la~~l~~~-~~~~~V~~aFle~~~Psl~eal~~l~~~g~~~vvVvP~FL~~G~H~ 88 (154)
T PLN02757 13 KDGVVIVDHGSRRKESNLMLEEFVAMYKQK-TGHPIVEPAHMELAEPSIKDAFGRCVEQGASRVIVSPFFLSPGRHW 88 (154)
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHHhh-CCCCcEEEEEEecCCCCHHHHHHHHHHCCCCEEEEEEhhhcCCcch
Confidence 346888999987665555443 34332 12223333333 5665666766655 567888876555555553
No 203
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=44.59 E-value=43 Score=22.06 Aligned_cols=35 Identities=26% Similarity=0.412 Sum_probs=26.3
Q ss_pred CCCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEecc
Q psy7291 75 TGKDITIVGHSKAVETALDAAKILAGQGIDAEVINLRS 112 (158)
Q Consensus 75 ~g~~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~ 112 (158)
+|..++||+.|..... -++.|.+.|-+++|+....
T Consensus 6 ~~~~vlVvGgG~va~~---k~~~Ll~~gA~v~vis~~~ 40 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAAR---KARLLLEAGAKVTVISPEI 40 (103)
T ss_dssp TT-EEEEEEESHHHHH---HHHHHCCCTBEEEEEESSE
T ss_pred CCCEEEEECCCHHHHH---HHHHHHhCCCEEEEECCch
Confidence 3789999999987653 3556777788999998885
No 204
>CHL00201 syh histidine-tRNA synthetase; Provisional
Probab=44.18 E-value=99 Score=26.06 Aligned_cols=59 Identities=19% Similarity=0.217 Sum_probs=39.4
Q ss_pred CcEEEEEech-hHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHh-CCCeEEEEeCCc
Q psy7291 77 KDITIVGHSK-AVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVM-KTNYLISVEGGW 138 (158)
Q Consensus 77 ~~~~ii~~G~-~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~-~~~~vvvvEe~~ 138 (158)
.++.|+..+. ....+++.++.|++.|+.+.+ +... +.+. +.++.+-+ +.+.++++-+.-
T Consensus 326 ~~v~v~~~~~~~~~~a~~ia~~LR~~Gi~vei-d~~~-~~l~-k~~k~A~~~~~~~viiiG~~E 386 (430)
T CHL00201 326 IDVYIATQGLKAQKKGWEIIQFLEKQNIKFEL-DLSS-SNFH-KQIKQAGKKRAKACIILGDNE 386 (430)
T ss_pred CCEEEEEcCHHHHHHHHHHHHHHHhCCCeEEE-eeCC-CCHH-HHHHHHHHcCCCEEEEEechH
Confidence 5688888776 457788999999999999876 4433 4453 34444433 456788887533
No 205
>PRK13906 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=44.17 E-value=29 Score=28.04 Aligned_cols=27 Identities=26% Similarity=0.557 Sum_probs=24.4
Q ss_pred CcccCCHHHHHHHHHHHHhCCCcEEEE
Q psy7291 1 VVSPYNSEDAKGLLKAAIRDPDPVVFL 27 (158)
Q Consensus 1 V~~P~d~~e~~~~l~~a~~~~~P~~iR 27 (158)
++.|.+.+|+..+++++.+++-|++++
T Consensus 40 ~v~p~~~edv~~~v~~a~~~~ip~~vl 66 (307)
T PRK13906 40 YITPTKNEEVQAVVKYAYQNEIPVTYL 66 (307)
T ss_pred EEEcCCHHHHHHHHHHHHHcCCCEEEE
Confidence 467999999999999999988999986
No 206
>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=43.65 E-value=31 Score=27.52 Aligned_cols=25 Identities=16% Similarity=0.105 Sum_probs=22.5
Q ss_pred ccCCHHHHHHHHHHHHhCCCcEEEE
Q psy7291 3 SPYNSEDAKGLLKAAIRDPDPVVFL 27 (158)
Q Consensus 3 ~P~d~~e~~~~l~~a~~~~~P~~iR 27 (158)
.+.++.|+.+.+++|+++++|.+|-
T Consensus 164 ~~~~~~~l~~~l~~Al~~~Gps~I~ 188 (279)
T PRK11866 164 FSGDVKHLKEIIKEAIKHKGFSFID 188 (279)
T ss_pred cCCCHHHHHHHHHHHHhCCCCEEEE
Confidence 3589999999999999999999984
No 207
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=43.51 E-value=70 Score=26.05 Aligned_cols=57 Identities=19% Similarity=0.255 Sum_probs=38.7
Q ss_pred ccCCCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCH-------HHHHHHHhCCCeEE
Q psy7291 73 RVTGKDITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDI-------ETITKSVMKTNYLI 132 (158)
Q Consensus 73 ~~~g~~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~-------~~l~~~~~~~~~vv 132 (158)
...|+.+.||++|.+...+ ++.|+.-|.++-.+|...-.+... ..|.++++..+-|.
T Consensus 139 el~gkTvGIiG~G~IG~~v---a~~l~afgm~v~~~d~~~~~~~~~~~~~~~~~~Ld~lL~~sDiv~ 202 (324)
T COG0111 139 ELAGKTVGIIGLGRIGRAV---AKRLKAFGMKVIGYDPYSPRERAGVDGVVGVDSLDELLAEADILT 202 (324)
T ss_pred cccCCEEEEECCCHHHHHH---HHHHHhCCCeEEEECCCCchhhhccccceecccHHHHHhhCCEEE
Confidence 3447899999999988764 556666688888888744443221 34778887776443
No 208
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=43.49 E-value=82 Score=25.50 Aligned_cols=37 Identities=30% Similarity=0.469 Sum_probs=26.9
Q ss_pred cCCCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEecc
Q psy7291 74 VTGKDITIVGHSKAVETALDAAKILAGQGIDAEVINLRS 112 (158)
Q Consensus 74 ~~g~~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~ 112 (158)
..|+++++|+.|..+..-+ +..|.++|..+++++-++
T Consensus 157 l~Gk~V~vIG~s~ivG~Pm--A~~L~~~gatVtv~~~~t 193 (301)
T PRK14194 157 LTGKHAVVIGRSNIVGKPM--AALLLQAHCSVTVVHSRS 193 (301)
T ss_pred CCCCEEEEECCCCccHHHH--HHHHHHCCCEEEEECCCC
Confidence 4589999999985555443 446667788888887654
No 209
>PRK03995 hypothetical protein; Provisional
Probab=43.42 E-value=1.5e+02 Score=23.53 Aligned_cols=80 Identities=14% Similarity=-0.013 Sum_probs=58.0
Q ss_pred CcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccC-CCHHHHHHHHhCC---CeEEEEeCCcCCCChHHHHHHHHH
Q psy7291 77 KDITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRP-LDIETITKSVMKT---NYLISVEGGWPQCGIGSEISARIM 152 (158)
Q Consensus 77 ~~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~P-ld~~~l~~~~~~~---~~vvvvEe~~~~GG~g~~i~~~l~ 152 (158)
....+|+.|.. +++-+--+.+.+.++.++.|=.....| ++.+.+.+.+.++ ...+++|.-...|+-=..+.+++.
T Consensus 180 ~~~~~iGiGGg-HYapr~T~~~l~~~~~~GHi~pky~l~~~~~~~i~~a~~ks~~~~~~~~id~K~~k~~~r~~i~~~le 258 (267)
T PRK03995 180 KFKPAIGIGGG-HYAPKFTKLALESEYCFGHIIPKYALDHLSEEVLIQAIEKSTPEIDRIVIDWKGVKSEDRERIIEFLE 258 (267)
T ss_pred CCCEEEEECCC-CccHHHHHHHhhCCeeEEeEccccchhcCCHHHHHHHHHhccCCCCEEEEecCCCCHHHHHHHHHHHH
Confidence 34566777753 444444454555578888887777777 8888888888874 237788877777888899999999
Q ss_pred cCCCC
Q psy7291 153 EIPYS 157 (158)
Q Consensus 153 ~~~~~ 157 (158)
+.|+.
T Consensus 259 ~~gi~ 263 (267)
T PRK03995 259 ELGIE 263 (267)
T ss_pred HCCCe
Confidence 98874
No 210
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=43.26 E-value=1.5e+02 Score=23.29 Aligned_cols=78 Identities=19% Similarity=0.152 Sum_probs=49.4
Q ss_pred CCcEEEEEech-hHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHH----HhCC-CeEEEEeCCcCCC-ChHHHHH
Q psy7291 76 GKDITIVGHSK-AVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKS----VMKT-NYLISVEGGWPQC-GIGSEIS 148 (158)
Q Consensus 76 g~~~~ii~~G~-~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~----~~~~-~~vvvvEe~~~~G-G~g~~i~ 148 (158)
++--+|+++|. .+..+.+-++..++.|.+.-++-.++..+.+.+.+.++ ++.. ..|++...-...| .+.....
T Consensus 69 ~~~~vi~gv~~~st~~~i~~a~~a~~~Gad~v~v~~P~~~~~s~~~l~~y~~~ia~~~~~pi~iYn~P~~tg~~ls~~~l 148 (289)
T PF00701_consen 69 GRVPVIAGVGANSTEEAIELARHAQDAGADAVLVIPPYYFKPSQEELIDYFRAIADATDLPIIIYNNPARTGNDLSPETL 148 (289)
T ss_dssp TSSEEEEEEESSSHHHHHHHHHHHHHTT-SEEEEEESTSSSCCHHHHHHHHHHHHHHSSSEEEEEEBHHHHSSTSHHHHH
T ss_pred CceEEEecCcchhHHHHHHHHHHHhhcCceEEEEeccccccchhhHHHHHHHHHHhhcCCCEEEEECCCccccCCCHHHH
Confidence 34456677776 77888888888888899988777777777787665443 3333 4566655432222 4555555
Q ss_pred HHHHc
Q psy7291 149 ARIME 153 (158)
Q Consensus 149 ~~l~~ 153 (158)
..|.+
T Consensus 149 ~~L~~ 153 (289)
T PF00701_consen 149 ARLAK 153 (289)
T ss_dssp HHHHT
T ss_pred HHHhc
Confidence 55554
No 211
>TIGR01744 XPRTase xanthine phosphoribosyltransferase. This model represent a xanthine-specific phosphoribosyltransferase of Bacillus subtilis and closely related proteins from other species, mostly from other Gram-positive bacteria. The adjacent gene is a xanthine transporter; B. subtilis can import xanthine for the purine salvage pathway or for catabolism to obtain nitrogen.
Probab=43.06 E-value=1.4e+02 Score=22.29 Aligned_cols=34 Identities=0% Similarity=-0.064 Sum_probs=29.0
Q ss_pred HHHhCCCeEEEEeCCcCCCChHHHHHHHHHcCCC
Q psy7291 123 KSVMKTNYLISVEGGWPQCGIGSEISARIMEIPY 156 (158)
Q Consensus 123 ~~~~~~~~vvvvEe~~~~GG~g~~i~~~l~~~~~ 156 (158)
..+...++|++||+-..+||--..+.+.+.+.|.
T Consensus 112 ~~l~~G~rVLIVDDvvtTGgT~~a~~~ll~~aGa 145 (191)
T TIGR01744 112 EFLSDQDRVLIIDDFLANGQAAHGLVDIAKQAGA 145 (191)
T ss_pred HhCCCcCEEEEEEehhccChHHHHHHHHHHHCCC
Confidence 3556788999999999999999999999888774
No 212
>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=43.05 E-value=2.1e+02 Score=24.28 Aligned_cols=56 Identities=18% Similarity=0.135 Sum_probs=31.8
Q ss_pred HHHhCCCcEEEEEeccccCCCHHHHHHHHhCCCeEEEEeCCc-CCCChH--HHHHHHHHcCCC
Q psy7291 97 ILAGQGIDAEVINLRSLRPLDIETITKSVMKTNYLISVEGGW-PQCGIG--SEISARIMEIPY 156 (158)
Q Consensus 97 ~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~~~vvvvEe~~-~~GG~g--~~i~~~l~~~~~ 156 (158)
.++..|+++..++ .|.|.+.+.+.+...-++|++|-.. ..|-+- ..|++...++|+
T Consensus 128 ~l~~~Gi~v~~vd----~~~d~e~l~~~l~~~tk~V~~e~~~Np~~~v~di~~I~~la~~~gi 186 (437)
T PRK05613 128 TLNRLGIEVTFVE----NPDDPESWQAAVQPNTKAFFGETFANPQADVLDIPAVAEVAHRNQV 186 (437)
T ss_pred HHHhcCeEEEEEC----CCCCHHHHHHhCCccCeEEEEECCCCCCCcccCHHHHHHHHHHcCC
Confidence 3455577777766 1346677777776544566676432 222221 566666666654
No 213
>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.
Probab=42.96 E-value=1.9e+02 Score=23.75 Aligned_cols=39 Identities=18% Similarity=0.164 Sum_probs=17.8
Q ss_pred CHHHHHHHHhCCCeEEEEeCC-cCCCChH--HHHHHHHHcCC
Q psy7291 117 DIETITKSVMKTNYLISVEGG-WPQCGIG--SEISARIMEIP 155 (158)
Q Consensus 117 d~~~l~~~~~~~~~vvvvEe~-~~~GG~g--~~i~~~l~~~~ 155 (158)
|.+.+.+.+....++|++|.- ++.|-.. ..|.+...++|
T Consensus 128 d~~~l~~~i~~~tklV~le~p~np~g~~~dl~~I~~la~~~g 169 (380)
T TIGR01325 128 DLNAWEAAVKPNTKLVFVETPSNPLGELVDIAALAELAHAIG 169 (380)
T ss_pred CHHHHHHhcCCCceEEEEECCCCCCCeeeCHHHHHHHHHHcC
Confidence 344555555433456666642 2333321 34555554444
No 214
>cd01476 VWA_integrin_invertebrates VWA_integrin (invertebrates): Integrins are a family of cell surface receptors that have diverse functions in cell-cell and cell-extracellular matrix interactions. Because of their involvement in many biologically important adhesion processes, integrins are conserved across a wide range of multicellular animals. Integrins from invertebrates have been identified from six phyla. There are no data to date to suggest any immunological functions for the invertebrate integrins. The members of this sub-group have the conserved MIDAS motif that is charateristic of this domain suggesting the involvement of the integrins in the recognition and binding of multi-ligands.
Probab=42.95 E-value=46 Score=23.34 Aligned_cols=54 Identities=13% Similarity=0.226 Sum_probs=30.1
Q ss_pred cEEEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccC--CCHHHHHHHHhCCCeEE
Q psy7291 78 DITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRP--LDIETITKSVMKTNYLI 132 (158)
Q Consensus 78 ~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~P--ld~~~l~~~~~~~~~vv 132 (158)
-++|+|=|.......++++.|++ +..+.++.+..=.+ .|.+.|..+...-..++
T Consensus 106 ~villTDG~~~~~~~~~~~~l~~-~~~v~v~~vg~g~~~~~~~~~L~~ia~~~~~~~ 161 (163)
T cd01476 106 VVVVLTDGRSHDDPEKQARILRA-VPNIETFAVGTGDPGTVDTEELHSITGNEDHIF 161 (163)
T ss_pred EEEEECCCCCCCchHHHHHHHhh-cCCCEEEEEECCCccccCHHHHHHHhCCCcccc
Confidence 46667766443234445566666 33444554444455 77777777766544443
No 215
>PRK06932 glycerate dehydrogenase; Provisional
Probab=42.92 E-value=76 Score=25.58 Aligned_cols=57 Identities=7% Similarity=0.154 Sum_probs=34.2
Q ss_pred ccCCCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCC--HHHHHHHHhCCCeEE
Q psy7291 73 RVTGKDITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLD--IETITKSVMKTNYLI 132 (158)
Q Consensus 73 ~~~g~~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld--~~~l~~~~~~~~~vv 132 (158)
...|+.+.||++|.+...+ ++.|+.-|.++-.++...-.... ...+.++++..+.|+
T Consensus 144 ~l~gktvgIiG~G~IG~~v---a~~l~~fg~~V~~~~~~~~~~~~~~~~~l~ell~~sDiv~ 202 (314)
T PRK06932 144 DVRGSTLGVFGKGCLGTEV---GRLAQALGMKVLYAEHKGASVCREGYTPFEEVLKQADIVT 202 (314)
T ss_pred ccCCCEEEEECCCHHHHHH---HHHHhcCCCEEEEECCCcccccccccCCHHHHHHhCCEEE
Confidence 3558899999999988764 45555556666555432111111 124677887776444
No 216
>PRK06487 glycerate dehydrogenase; Provisional
Probab=42.58 E-value=86 Score=25.29 Aligned_cols=56 Identities=20% Similarity=0.298 Sum_probs=35.9
Q ss_pred cCCCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccC--CCHHHHHHHHhCCCeEEE
Q psy7291 74 VTGKDITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRP--LDIETITKSVMKTNYLIS 133 (158)
Q Consensus 74 ~~g~~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~P--ld~~~l~~~~~~~~~vvv 133 (158)
..|+.+.||++|.+...+ ++.|+.-|.++-.++.. .++ .....+.++++..+.|++
T Consensus 146 l~gktvgIiG~G~IG~~v---A~~l~~fgm~V~~~~~~-~~~~~~~~~~l~ell~~sDiv~l 203 (317)
T PRK06487 146 LEGKTLGLLGHGELGGAV---ARLAEAFGMRVLIGQLP-GRPARPDRLPLDELLPQVDALTL 203 (317)
T ss_pred cCCCEEEEECCCHHHHHH---HHHHhhCCCEEEEECCC-CCcccccccCHHHHHHhCCEEEE
Confidence 458899999999988764 45565557766666532 122 222347788877764443
No 217
>COG1665 Predicted nucleotidyltransferase [General function prediction only]
Probab=42.49 E-value=83 Score=25.34 Aligned_cols=45 Identities=18% Similarity=-0.034 Sum_probs=33.0
Q ss_pred cccccCCCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHH
Q psy7291 70 PVIRVTGKDITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITK 123 (158)
Q Consensus 70 ~~~~~~g~~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~ 123 (158)
+++....+|+=+|-||.|--.|.+|+..+.+.+ -+.++|.+....
T Consensus 132 ~gl~~~nSDIDfVVYG~~~~~aRea~~~~~e~~---------~l~~ldd~~W~~ 176 (315)
T COG1665 132 LGLYDENSDIDFVVYGQMWFRAREAILDAIEDF---------PLGELDDAEWER 176 (315)
T ss_pred ccccCCCCCceEEEEcHHHHHHHHHHHhhhhcc---------CccCcCHHHHHH
Confidence 333444789999999999999999998887764 356666665433
No 218
>PLN02928 oxidoreductase family protein
Probab=42.30 E-value=65 Score=26.40 Aligned_cols=35 Identities=23% Similarity=0.177 Sum_probs=26.3
Q ss_pred cCCCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEec
Q psy7291 74 VTGKDITIVGHSKAVETALDAAKILAGQGIDAEVINLR 111 (158)
Q Consensus 74 ~~g~~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~ 111 (158)
..|+.+.||++|.+...+ ++.|+.-|.++.+++..
T Consensus 157 l~gktvGIiG~G~IG~~v---A~~l~afG~~V~~~dr~ 191 (347)
T PLN02928 157 LFGKTVFILGYGAIGIEL---AKRLRPFGVKLLATRRS 191 (347)
T ss_pred CCCCEEEEECCCHHHHHH---HHHHhhCCCEEEEECCC
Confidence 457899999999988764 55666668888777654
No 219
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=42.00 E-value=1.9e+02 Score=23.47 Aligned_cols=54 Identities=11% Similarity=0.214 Sum_probs=33.6
Q ss_pred cEEEEEechhHHHHHHHHHHHHhCCCcEEEEEecc-------------ccCCCHHHHHHHHhC--CCeEEEEe
Q psy7291 78 DITIVGHSKAVETALDAAKILAGQGIDAEVINLRS-------------LRPLDIETITKSVMK--TNYLISVE 135 (158)
Q Consensus 78 ~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~-------------l~Pld~~~l~~~~~~--~~~vvvvE 135 (158)
++.||+.|........+ +++.|+.+-+++... +.+.|.+.+.+++++ .+ +++.|
T Consensus 1 kililG~g~~~~~l~~a---a~~~G~~v~~~d~~~~~~~~~~ad~~~~~~~~d~~~l~~~~~~~~id-~v~~~ 69 (380)
T TIGR01142 1 RVLLLGSGELGKEVAIE---AQRLGVEVIAVDRYANAPAMQVAHRSYVINMLDGDALRAVIEREKPD-YIVPE 69 (380)
T ss_pred CEEEECCCHHHHHHHHH---HHHcCCEEEEEeCCCCCchhhhCceEEEcCCCCHHHHHHHHHHhCCC-EEEec
Confidence 37888888766555444 445588777765532 344577788888874 34 44444
No 220
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=41.97 E-value=1.3e+02 Score=22.55 Aligned_cols=34 Identities=24% Similarity=0.394 Sum_probs=25.0
Q ss_pred CCCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEec
Q psy7291 75 TGKDITIVGHSKAVETALDAAKILAGQGIDAEVINLR 111 (158)
Q Consensus 75 ~g~~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~ 111 (158)
.|..++||+.|..... -++.|-+.|-+++|++..
T Consensus 8 ~gk~vlVvGgG~va~r---k~~~Ll~~ga~VtVvsp~ 41 (205)
T TIGR01470 8 EGRAVLVVGGGDVALR---KARLLLKAGAQLRVIAEE 41 (205)
T ss_pred CCCeEEEECcCHHHHH---HHHHHHHCCCEEEEEcCC
Confidence 3788999999977643 344566678899999764
No 221
>PRK10874 cysteine sulfinate desulfinase; Provisional
Probab=41.91 E-value=1.9e+02 Score=23.55 Aligned_cols=58 Identities=9% Similarity=0.078 Sum_probs=33.6
Q ss_pred HhCCCcEEEEEeccccCCCHHHHHHHHhCCCeEEEEeC-CcCCCChH--HHHHHHHHcCCC
Q psy7291 99 AGQGIDAEVINLRSLRPLDIETITKSVMKTNYLISVEG-GWPQCGIG--SEISARIMEIPY 156 (158)
Q Consensus 99 ~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~~~vvvvEe-~~~~GG~g--~~i~~~l~~~~~ 156 (158)
+..|.++..+.+..-..+|.+.+.+.+....+++++-. ++..|..- ++|++...++|.
T Consensus 131 ~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~t~lv~i~~~~n~tG~~~~~~~i~~l~~~~g~ 191 (401)
T PRK10874 131 QQTGAKVVKLPLGADRLPDVDLLPELITPRTRILALGQMSNVTGGCPDLARAITLAHQAGM 191 (401)
T ss_pred HHhCCEEEEEecCCCCcCCHHHHHHhcCcCcEEEEEeCCcccccCcCCHHHHHHHHHHcCC
Confidence 34476666666543334566777777754445666554 45566543 566766666553
No 222
>PRK05802 hypothetical protein; Provisional
Probab=41.51 E-value=1.8e+02 Score=23.54 Aligned_cols=37 Identities=14% Similarity=0.128 Sum_probs=28.1
Q ss_pred CCcEEEEEechhHHHHHHHHHHHHhCCCcEEEE-Eecc
Q psy7291 76 GKDITIVGHSKAVETALDAAKILAGQGIDAEVI-NLRS 112 (158)
Q Consensus 76 g~~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi-~~~~ 112 (158)
+.++++|+-|......+..++.|.+++-++.++ ..+.
T Consensus 172 ~~~~llIaGGiGIaPl~~l~~~l~~~~~~v~li~g~r~ 209 (320)
T PRK05802 172 NGKSLVIARGIGQAPGVPVIKKLYSNGNKIIVIIDKGP 209 (320)
T ss_pred CCeEEEEEeEEeHHHHHHHHHHHHHcCCcEEEEEeCCC
Confidence 457999999999988888888887766566654 3444
No 223
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=41.51 E-value=96 Score=24.65 Aligned_cols=33 Identities=27% Similarity=0.276 Sum_probs=23.9
Q ss_pred CCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEec
Q psy7291 76 GKDITIVGHSKAVETALDAAKILAGQGIDAEVINLR 111 (158)
Q Consensus 76 g~~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~ 111 (158)
+.+++||+.|.+.... +..|...|.++.+++-.
T Consensus 4 ~m~I~iiG~G~~G~~l---A~~l~~~G~~V~~~~r~ 36 (308)
T PRK14619 4 PKTIAILGAGAWGSTL---AGLASANGHRVRVWSRR 36 (308)
T ss_pred CCEEEEECccHHHHHH---HHHHHHCCCEEEEEeCC
Confidence 4579999999987664 44566668888877643
No 224
>cd06066 H2MP_NAD-link-bidir Endopeptidases that belong to the bidirectional NAD-linked hydrogenase group. This group of endopeptidases are highly specific carboxyl-terminal protease (HoxW protease) which releases a 24-amino-acid peptide from HoxH prior to progression of subunit assembly. These bidirectional hydrogenases are heteropentamers encoded by the hox (hydrogen oxidation) genes, in which complex HoxEFU shows the diaphorase activity, and HoxYH constitutes the NiFe-hydrogenase.
Probab=41.50 E-value=90 Score=21.79 Aligned_cols=54 Identities=11% Similarity=0.217 Sum_probs=30.9
Q ss_pred EEEechhH----HHHHHHHHHHHhC-CCcEEEEEeccccCCCHHHHHHHHhCCCeEEEEeCCc
Q psy7291 81 IVGHSKAV----ETALDAAKILAGQ-GIDAEVINLRSLRPLDIETITKSVMKTNYLISVEGGW 138 (158)
Q Consensus 81 ii~~G~~~----~~a~ea~~~L~~~-gi~~~vi~~~~l~Pld~~~l~~~~~~~~~vvvvEe~~ 138 (158)
|++.|+.. .....+++.|+++ .-++.+++..+.- ++ +...+..++.+++++-..
T Consensus 2 VlGvGN~l~~DDGvG~~v~~~L~~~~~~~v~~id~g~~g-~~---l~~~l~~~d~vIivDA~~ 60 (139)
T cd06066 2 VIGYGNPLRGDDGLGPAVAERIEEWLLPGVEVLAVHQLT-PE---LAEDLAGADRVIFIDASL 60 (139)
T ss_pred EEEeCCccccccchhHHHHHHHHhhCCCCeEEEEcCCCC-HH---HHHHhcCCCEEEEEEccC
Confidence 45555543 2344456666544 3356778776632 21 344566788899988643
No 225
>COG0277 GlcD FAD/FMN-containing dehydrogenases [Energy production and conversion]
Probab=41.44 E-value=32 Score=28.68 Aligned_cols=28 Identities=32% Similarity=0.356 Sum_probs=25.1
Q ss_pred CcccCCHHHHHHHHHHHHhCCCcEEEEe
Q psy7291 1 VVSPYNSEDAKGLLKAAIRDPDPVVFLE 28 (158)
Q Consensus 1 V~~P~d~~e~~~~l~~a~~~~~P~~iR~ 28 (158)
|+.|.+.+|+..++++|.+++.|++.|-
T Consensus 35 v~~p~s~~eV~~iv~~a~~~~~~v~prG 62 (459)
T COG0277 35 VVFPKSEEEVAAILRLANENGIPVVPRG 62 (459)
T ss_pred EEccCCHHHHHHHHHHHHHcCCeEEEEC
Confidence 4689999999999999999999988873
No 226
>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=41.36 E-value=2.2e+02 Score=24.07 Aligned_cols=54 Identities=19% Similarity=0.148 Sum_probs=32.2
Q ss_pred HHhCCCcEEEEEeccccCCCHHHHHHHHhCCCeEEEEeCCc-CCCChH--HHHHHHHHcCCC
Q psy7291 98 LAGQGIDAEVINLRSLRPLDIETITKSVMKTNYLISVEGGW-PQCGIG--SEISARIMEIPY 156 (158)
Q Consensus 98 L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~~~vvvvEe~~-~~GG~g--~~i~~~l~~~~~ 156 (158)
+...|+.+..+++. |.+.+.+.+...-++|++|--. ..|-.- ..|++...++|+
T Consensus 124 l~~~Gi~v~~vd~~-----d~~~l~~~i~~~TklV~~e~~~np~g~v~Di~~I~~la~~~gi 180 (433)
T PRK08134 124 LRRFGIETTFVKPG-----DIDGWRAAIRPNTRLLFGETLGNPGLEVLDIPTVAAIAHEAGV 180 (433)
T ss_pred HhhCCeEEEEECCC-----CHHHHHHhcCCCCeEEEEECCCcccCcccCHHHHHHHHHHcCC
Confidence 44567777777653 6677877776555677777422 222222 566777766654
No 227
>PRK10537 voltage-gated potassium channel; Provisional
Probab=41.05 E-value=1.1e+02 Score=25.55 Aligned_cols=32 Identities=25% Similarity=0.190 Sum_probs=24.9
Q ss_pred CCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEe
Q psy7291 76 GKDITIVGHSKAVETALDAAKILAGQGIDAEVINL 110 (158)
Q Consensus 76 g~~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~ 110 (158)
.+.++|+++|..... .+++|.++|+++.+++.
T Consensus 240 k~HvII~G~g~lg~~---v~~~L~~~g~~vvVId~ 271 (393)
T PRK10537 240 KDHFIICGHSPLAIN---TYLGLRQRGQAVTVIVP 271 (393)
T ss_pred CCeEEEECCChHHHH---HHHHHHHCCCCEEEEEC
Confidence 356999999988766 45678788899888874
No 228
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=41.01 E-value=1e+02 Score=20.64 Aligned_cols=49 Identities=20% Similarity=0.222 Sum_probs=34.0
Q ss_pred CCcEEEEEechhHHHHHHHHHH-HHhCCCcEEEEEeccccC--CCHHHHHHHHh
Q psy7291 76 GKDITIVGHSKAVETALDAAKI-LAGQGIDAEVINLRSLRP--LDIETITKSVM 126 (158)
Q Consensus 76 g~~~~ii~~G~~~~~a~ea~~~-L~~~gi~~~vi~~~~l~P--ld~~~l~~~~~ 126 (158)
+.|++++ |+.....++-++. +.+.++.+.+|+.....| +|.+.+...++
T Consensus 50 ~~DvIll--~PQi~~~~~~i~~~~~~~~ipv~~I~~~~Y~~~~~~~~~~~~~~~ 101 (104)
T PRK09590 50 EYDLYLV--SPQTKMYFKQFEEAGAKVGKPVVQIPPQAYIPIPMGIEKMAKLIL 101 (104)
T ss_pred CCCEEEE--ChHHHHHHHHHHHHhhhcCCCEEEeCHHHcCCCccCHHHHHHHHH
Confidence 3565444 7767666555554 456689999999999997 77777666554
No 229
>PRK12831 putative oxidoreductase; Provisional
Probab=40.82 E-value=1.2e+02 Score=25.70 Aligned_cols=41 Identities=29% Similarity=0.464 Sum_probs=29.6
Q ss_pred CCCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCH
Q psy7291 75 TGKDITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDI 118 (158)
Q Consensus 75 ~g~~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~ 118 (158)
.+++++||+-|.. +.+++..|...|.+++++..+.-..++.
T Consensus 280 ~gk~VvVIGgG~v---a~d~A~~l~r~Ga~Vtlv~r~~~~~m~a 320 (464)
T PRK12831 280 VGKKVAVVGGGNV---AMDAARTALRLGAEVHIVYRRSEEELPA 320 (464)
T ss_pred CCCeEEEECCcHH---HHHHHHHHHHcCCEEEEEeecCcccCCC
Confidence 3689999999854 5566777777788899998765444443
No 230
>PRK13243 glyoxylate reductase; Reviewed
Probab=40.77 E-value=78 Score=25.72 Aligned_cols=57 Identities=18% Similarity=0.326 Sum_probs=35.4
Q ss_pred ccCCCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCC-------CHHHHHHHHhCCCeEEE
Q psy7291 73 RVTGKDITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPL-------DIETITKSVMKTNYLIS 133 (158)
Q Consensus 73 ~~~g~~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pl-------d~~~l~~~~~~~~~vvv 133 (158)
...|+.+.||++|.+...+ ++.|+..|.++.+++... .+. ....+.++++..+.|++
T Consensus 147 ~L~gktvgIiG~G~IG~~v---A~~l~~~G~~V~~~d~~~-~~~~~~~~~~~~~~l~ell~~aDiV~l 210 (333)
T PRK13243 147 DVYGKTIGIIGFGRIGQAV---ARRAKGFGMRILYYSRTR-KPEAEKELGAEYRPLEELLRESDFVSL 210 (333)
T ss_pred CCCCCEEEEECcCHHHHHH---HHHHHHCCCEEEEECCCC-ChhhHHHcCCEecCHHHHHhhCCEEEE
Confidence 3558899999999998765 445556688777776431 111 11135666666654444
No 231
>PLN02735 carbamoyl-phosphate synthase
Probab=40.72 E-value=1.2e+02 Score=29.09 Aligned_cols=53 Identities=26% Similarity=0.407 Sum_probs=37.6
Q ss_pred CcEEEEEechhH-HH-------HHHHHHHHHhCCCcEEEEEec--------------cccCCCHHHHHHHHhCCC
Q psy7291 77 KDITIVGHSKAV-ET-------ALDAAKILAGQGIDAEVINLR--------------SLRPLDIETITKSVMKTN 129 (158)
Q Consensus 77 ~~~~ii~~G~~~-~~-------a~ea~~~L~~~gi~~~vi~~~--------------~l~Pld~~~l~~~~~~~~ 129 (158)
.+++|++.|... .. ..++++.|+++|+.+-+++.. .+-|++.+.+.+++++.+
T Consensus 24 kkVLiiGsG~~~igqa~e~d~SG~q~~kaLke~G~~Vi~vd~np~t~~~~~~~aD~~yi~p~~~e~v~~ii~~e~ 98 (1102)
T PLN02735 24 KKIMILGAGPIVIGQACEFDYSGTQACKALKEEGYEVVLINSNPATIMTDPETADRTYIAPMTPELVEQVIAKER 98 (1102)
T ss_pred CEEEEECCCccccccceeecchHHHHHHHHHHcCCEEEEEeCCcccccCChhhCcEEEeCCCCHHHHHHHHHHhC
Confidence 579999998752 21 345777888889998888753 256777777878777543
No 232
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=40.58 E-value=44 Score=22.88 Aligned_cols=36 Identities=25% Similarity=0.335 Sum_probs=26.3
Q ss_pred echhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHH
Q psy7291 84 HSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIE 119 (158)
Q Consensus 84 ~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~ 119 (158)
.|.+-..+.+.++.|.++|+++.++....-.+...+
T Consensus 11 ~GG~e~~~~~l~~~l~~~G~~v~v~~~~~~~~~~~~ 46 (177)
T PF13439_consen 11 IGGAERVVLNLARALAKRGHEVTVVSPGVKDPIEEE 46 (177)
T ss_dssp SSHHHHHHHHHHHHHHHTT-EEEEEESS-TTS-SST
T ss_pred CChHHHHHHHHHHHHHHCCCEEEEEEcCCCccchhh
Confidence 467777888899999999999999977766655444
No 233
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=40.56 E-value=97 Score=22.94 Aligned_cols=61 Identities=10% Similarity=0.100 Sum_probs=39.4
Q ss_pred chhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhCCCeEEEEeCCcCCCChHHHHHHHHHc
Q psy7291 85 SKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKTNYLISVEGGWPQCGIGSEISARIME 153 (158)
Q Consensus 85 G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~~~vvvvEe~~~~GG~g~~i~~~l~~ 153 (158)
|.+-..|...+..|++.|+.+++.++..+.-++ +.+++.||+- -....|-+-+.+-+++..
T Consensus 12 GqT~kIA~~iA~~L~e~g~qvdi~dl~~~~~~~-------l~~ydavVIg-AsI~~~h~~~~~~~Fv~k 72 (175)
T COG4635 12 GQTRKIAEYIASHLRESGIQVDIQDLHAVEEPA-------LEDYDAVVIG-ASIRYGHFHEAVQSFVKK 72 (175)
T ss_pred CcHHHHHHHHHHHhhhcCCeeeeeehhhhhccC-------hhhCceEEEe-cchhhhhhHHHHHHHHHH
Confidence 445555666677889999999999887754322 3455555543 344567777776666653
No 234
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=40.40 E-value=57 Score=23.29 Aligned_cols=31 Identities=23% Similarity=0.303 Sum_probs=21.9
Q ss_pred cEEEEEechhHHHHHHHHHHHHhCCCcEEEEEec
Q psy7291 78 DITIVGHSKAVETALDAAKILAGQGIDAEVINLR 111 (158)
Q Consensus 78 ~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~ 111 (158)
++.+|+.|.|.... ++.|.+.|.++.++|..
T Consensus 3 ~Ig~IGlG~mG~~~---a~~L~~~g~~v~~~d~~ 33 (163)
T PF03446_consen 3 KIGFIGLGNMGSAM---ARNLAKAGYEVTVYDRS 33 (163)
T ss_dssp EEEEE--SHHHHHH---HHHHHHTTTEEEEEESS
T ss_pred EEEEEchHHHHHHH---HHHHHhcCCeEEeeccc
Confidence 58899999988764 45666778888888744
No 235
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=40.39 E-value=82 Score=19.21 Aligned_cols=62 Identities=6% Similarity=-0.102 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHhCCCcEEEEEeccccCCC--HHHHHHHHhCCCeEEEEeC--CcCCCChHHHHHHHHHcC
Q psy7291 89 ETALDAAKILAGQGIDAEVINLRSLRPLD--IETITKSVMKTNYLISVEG--GWPQCGIGSEISARIMEI 154 (158)
Q Consensus 89 ~~a~ea~~~L~~~gi~~~vi~~~~l~Pld--~~~l~~~~~~~~~vvvvEe--~~~~GG~g~~i~~~l~~~ 154 (158)
..+.++..-|.+.|+..+++++. +-+ .+.+.. +....+|=++.+ +-..-.=+..|..+|.+.
T Consensus 11 p~~~kv~~~L~~~gi~y~~~~v~---~~~~~~~~~~~-~~p~~~vP~l~~~~~~~~l~es~~I~~yL~~~ 76 (77)
T cd03041 11 PFCRLVREVLTELELDVILYPCP---KGSPKRDKFLE-KGGKVQVPYLVDPNTGVQMFESADIVKYLFKT 76 (77)
T ss_pred chHHHHHHHHHHcCCcEEEEECC---CChHHHHHHHH-hCCCCcccEEEeCCCCeEEEcHHHHHHHHHHh
Confidence 45666666778889999998763 221 123332 223334433322 211223356788888653
No 236
>PRK08367 porA pyruvate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=40.34 E-value=44 Score=28.02 Aligned_cols=36 Identities=17% Similarity=0.107 Sum_probs=28.0
Q ss_pred CcccCCHHHHHHHHHHHHhC----C--CcEEEEecc-cccccc
Q psy7291 1 VVSPYNSEDAKGLLKAAIRD----P--DPVVFLENE-LLYGVQ 36 (158)
Q Consensus 1 V~~P~d~~e~~~~l~~a~~~----~--~P~~iR~~~-~~~~~~ 36 (158)
++.|+|.||+.++...|++. + .|++++... +.+|..
T Consensus 134 ~~~a~~~QEa~D~~~~Af~lAE~~~~~~Pviv~~Dgf~~sH~~ 176 (394)
T PRK08367 134 QFYAENNQEALDLILIAFKVAEDERVLLPAMVGFDAFILTHTV 176 (394)
T ss_pred EEeCCCHHHHHHHHHHHHHHHHHhCcCCCEEEEechhhhcCcc
Confidence 35789999999999999972 3 699999776 455543
No 237
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=40.24 E-value=61 Score=23.76 Aligned_cols=37 Identities=27% Similarity=0.501 Sum_probs=24.5
Q ss_pred CCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccC
Q psy7291 76 GKDITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRP 115 (158)
Q Consensus 76 g~~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~P 115 (158)
|+.+++++||..-.-+ ++.|+..|.++.|.+...++-
T Consensus 23 Gk~vvV~GYG~vG~g~---A~~lr~~Ga~V~V~e~DPi~a 59 (162)
T PF00670_consen 23 GKRVVVIGYGKVGKGI---ARALRGLGARVTVTEIDPIRA 59 (162)
T ss_dssp TSEEEEE--SHHHHHH---HHHHHHTT-EEEEE-SSHHHH
T ss_pred CCEEEEeCCCcccHHH---HHHHhhCCCEEEEEECChHHH
Confidence 8899999999877654 556777788888887755433
No 238
>TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type. Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation.
Probab=40.12 E-value=2e+02 Score=23.25 Aligned_cols=60 Identities=17% Similarity=0.161 Sum_probs=35.6
Q ss_pred HHHhCCCcEEEEEeccccCCCHHHHHHHHhCCCeEEEEeC-CcCCCChH--HHHHHHHHcCCC
Q psy7291 97 ILAGQGIDAEVINLRSLRPLDIETITKSVMKTNYLISVEG-GWPQCGIG--SEISARIMEIPY 156 (158)
Q Consensus 97 ~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~~~vvvvEe-~~~~GG~g--~~i~~~l~~~~~ 156 (158)
.++..|.++..+.+..-..+|.+.+.+.+....+++++.. ++..|-.- ++|.+.+.++|.
T Consensus 109 ~~~~~G~~v~~v~~~~~g~~d~~~l~~~i~~~t~lv~~~~~~n~tG~~~~~~~I~~la~~~g~ 171 (382)
T TIGR03403 109 FLESLGVEVTYLPINEQGTITAEQVREAITEKTALVSVMWANNETGMIFPIKEIGEICKERGV 171 (382)
T ss_pred HHHHCCCEEEEEecCCCCCCCHHHHHHhcccCCeEEEEEcccCCCccccCHHHHHHHHHHcCC
Confidence 4445577766665543244677778777765456676764 44444432 567777766653
No 239
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=40.05 E-value=79 Score=26.56 Aligned_cols=59 Identities=17% Similarity=0.357 Sum_probs=37.2
Q ss_pred cccCCCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCC----HHHHHHHHhCCCeEEEE
Q psy7291 72 IRVTGKDITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLD----IETITKSVMKTNYLISV 134 (158)
Q Consensus 72 ~~~~g~~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld----~~~l~~~~~~~~~vvvv 134 (158)
....|+.+.||++|.+...+ ++.++.-|.++-.++...-.+.. ...+.++++..+ +|++
T Consensus 147 ~~L~gktvGIiG~G~IG~~v---A~~~~~fGm~V~~~d~~~~~~~~~~~~~~~l~ell~~sD-iVsl 209 (409)
T PRK11790 147 FEVRGKTLGIVGYGHIGTQL---SVLAESLGMRVYFYDIEDKLPLGNARQVGSLEELLAQSD-VVSL 209 (409)
T ss_pred ccCCCCEEEEECCCHHHHHH---HHHHHHCCCEEEEECCCcccccCCceecCCHHHHHhhCC-EEEE
Confidence 34558899999999988764 44555558887777753211111 124778887765 4444
No 240
>PRK04148 hypothetical protein; Provisional
Probab=39.98 E-value=70 Score=22.67 Aligned_cols=33 Identities=30% Similarity=0.374 Sum_probs=23.7
Q ss_pred CCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEecc
Q psy7291 76 GKDITIVGHSKAVETALDAAKILAGQGIDAEVINLRS 112 (158)
Q Consensus 76 g~~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~ 112 (158)
+.+++.|++|.....| ..|.+.|.++..+|..-
T Consensus 17 ~~kileIG~GfG~~vA----~~L~~~G~~ViaIDi~~ 49 (134)
T PRK04148 17 NKKIVELGIGFYFKVA----KKLKESGFDVIVIDINE 49 (134)
T ss_pred CCEEEEEEecCCHHHH----HHHHHCCCEEEEEECCH
Confidence 5679999999655443 35667788888888653
No 241
>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional
Probab=39.88 E-value=2.2e+02 Score=23.69 Aligned_cols=51 Identities=10% Similarity=0.098 Sum_probs=27.3
Q ss_pred hCCCcEEEEEeccccCCCHHHHHHHHhCCCeEEEEeCCc-CCCChH--HHHHHHHHcCC
Q psy7291 100 GQGIDAEVINLRSLRPLDIETITKSVMKTNYLISVEGGW-PQCGIG--SEISARIMEIP 155 (158)
Q Consensus 100 ~~gi~~~vi~~~~l~Pld~~~l~~~~~~~~~vvvvEe~~-~~GG~g--~~i~~~l~~~~ 155 (158)
..|+.+..++ +.|.+.+.+.+....++|++|.-. +.|..- ..|++...++|
T Consensus 132 ~~G~~v~~vd-----~~d~~~l~~ai~~~tklV~~esp~Nptg~v~dl~~I~~la~~~g 185 (403)
T PRK07810 132 RWGVETVFVD-----GEDLSQWEEALSVPTQAVFFETPSNPMQSLVDIAAVSELAHAAG 185 (403)
T ss_pred HcCcEEEEEC-----CCCHHHHHHhcCcCceEEEEECCCCCCCeecCHHHHHHHHHHcC
Confidence 3455555544 235566666665544667777533 444332 45565555554
No 242
>PRK06436 glycerate dehydrogenase; Provisional
Probab=39.77 E-value=1e+02 Score=24.84 Aligned_cols=56 Identities=11% Similarity=0.095 Sum_probs=36.1
Q ss_pred cCCCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCC----HHHHHHHHhCCCeEEE
Q psy7291 74 VTGKDITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLD----IETITKSVMKTNYLIS 133 (158)
Q Consensus 74 ~~g~~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld----~~~l~~~~~~~~~vvv 133 (158)
..|+.+.||++|.+...+ ++.|+.-|.++.+++... .+-. ...+.++++..+.|++
T Consensus 120 L~gktvgIiG~G~IG~~v---A~~l~afG~~V~~~~r~~-~~~~~~~~~~~l~ell~~aDiv~~ 179 (303)
T PRK06436 120 LYNKSLGILGYGGIGRRV---ALLAKAFGMNIYAYTRSY-VNDGISSIYMEPEDIMKKSDFVLI 179 (303)
T ss_pred CCCCEEEEECcCHHHHHH---HHHHHHCCCEEEEECCCC-cccCcccccCCHHHHHhhCCEEEE
Confidence 458899999999988765 345666688888877542 1111 1236677766654444
No 243
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=39.72 E-value=1e+02 Score=24.44 Aligned_cols=75 Identities=19% Similarity=0.134 Sum_probs=47.6
Q ss_pred CCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHH----HHhCC-CeEEEEeCCcCCC-ChHHHHHH
Q psy7291 76 GKDITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITK----SVMKT-NYLISVEGGWPQC-GIGSEISA 149 (158)
Q Consensus 76 g~~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~----~~~~~-~~vvvvEe~~~~G-G~g~~i~~ 149 (158)
++--+|++.|..+..+.+.++..++.|.+.-++-.++..+.+++.+.+ +++.. -.|++.. . .| .+..++..
T Consensus 68 ~~~pvi~gv~~~t~~~i~~a~~a~~~Gad~v~~~pP~y~~~~~~~i~~~f~~v~~~~~~pi~lYn--~-~g~~l~~~~l~ 144 (289)
T cd00951 68 GRVPVLAGAGYGTATAIAYAQAAEKAGADGILLLPPYLTEAPQEGLYAHVEAVCKSTDLGVIVYN--R-ANAVLTADSLA 144 (289)
T ss_pred CCCCEEEecCCCHHHHHHHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEe--C-CCCCCCHHHHH
Confidence 333456667767777888778788888888777777766667765444 33332 3566665 2 23 46666666
Q ss_pred HHHc
Q psy7291 150 RIME 153 (158)
Q Consensus 150 ~l~~ 153 (158)
.|.+
T Consensus 145 ~L~~ 148 (289)
T cd00951 145 RLAE 148 (289)
T ss_pred HHHh
Confidence 6665
No 244
>PRK07671 cystathionine beta-lyase; Provisional
Probab=39.69 E-value=2.1e+02 Score=23.47 Aligned_cols=39 Identities=23% Similarity=0.214 Sum_probs=19.1
Q ss_pred CHHHHHHHHhCCCeEEEEeCC-cCCCChH--HHHHHHHHcCC
Q psy7291 117 DIETITKSVMKTNYLISVEGG-WPQCGIG--SEISARIMEIP 155 (158)
Q Consensus 117 d~~~l~~~~~~~~~vvvvEe~-~~~GG~g--~~i~~~l~~~~ 155 (158)
|.+.+.+.++..-++|++|.- ++.|-.- +.|++...++|
T Consensus 123 d~~~l~~ai~~~tklV~le~P~NPtg~~~dl~~I~~la~~~g 164 (377)
T PRK07671 123 NLEEVEEAIRPNTKAIYVETPTNPLLKITDIKKISTIAKEKG 164 (377)
T ss_pred CHHHHHHhcCCCCeEEEEECCCCCCCcccCHHHHHHHHHHcC
Confidence 555566666543456666642 3333322 34555555444
No 245
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=39.66 E-value=1.4e+02 Score=21.37 Aligned_cols=57 Identities=12% Similarity=0.077 Sum_probs=36.5
Q ss_pred hHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhC-----CCeEEEEeCCcCCCChHH
Q psy7291 87 AVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMK-----TNYLISVEGGWPQCGIGS 145 (158)
Q Consensus 87 ~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~-----~~~vvvvEe~~~~GG~g~ 145 (158)
+......|.+.|+..++++..+|+.. .+--.+.|.+.+.. .-..|+|.... .||..+
T Consensus 15 t~~~C~~ak~iL~~~~V~~~e~DVs~-~~~~~~EL~~~~g~~~~~~tvPqVFI~G~~-IGG~de 76 (147)
T cd03031 15 TFEDCNNVRAILESFRVKFDERDVSM-DSGFREELRELLGAELKAVSLPRVFVDGRY-LGGAEE 76 (147)
T ss_pred cChhHHHHHHHHHHCCCcEEEEECCC-CHHHHHHHHHHhCCCCCCCCCCEEEECCEE-EecHHH
Confidence 56777788888999999999999875 22113345555432 33456677554 577643
No 246
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []. No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process
Probab=39.65 E-value=1.3e+02 Score=20.84 Aligned_cols=59 Identities=15% Similarity=0.055 Sum_probs=38.4
Q ss_pred EEEEEechhHHHHHHHHHHHHhC-CCcEEEEEeccccCCCHHHHHHHHh-CCCeEEEEeCC
Q psy7291 79 ITIVGHSKAVETALDAAKILAGQ-GIDAEVINLRSLRPLDIETITKSVM-KTNYLISVEGG 137 (158)
Q Consensus 79 ~~ii~~G~~~~~a~ea~~~L~~~-gi~~~vi~~~~l~Pld~~~l~~~~~-~~~~vvvvEe~ 137 (158)
++.+++-.....+.+.+...+.+ --++.+|.+++.--+|...+.+.+. +.+.|+++--+
T Consensus 2 Il~F~C~~~ay~aad~ag~~~~~~p~~vriIrvpC~Grv~~~~il~Af~~GADGV~V~gC~ 62 (124)
T PF02662_consen 2 ILAFCCNWCAYAAADLAGVSRLQYPPNVRIIRVPCSGRVDPEFILRAFEKGADGVLVAGCH 62 (124)
T ss_pred EEEEEeCCCcHHHHHHHhhccCCCCCCeEEEEccCCCccCHHHHHHHHHcCCCEEEEeCCC
Confidence 34444444444444444333322 2469999999999999998888765 57889986544
No 247
>PRK08535 translation initiation factor IF-2B subunit delta; Provisional
Probab=39.42 E-value=1.7e+02 Score=23.63 Aligned_cols=29 Identities=10% Similarity=0.085 Sum_probs=13.7
Q ss_pred HhCCCeEEE-EeCCcCCCC----hHHHHHHHHHc
Q psy7291 125 VMKTNYLIS-VEGGWPQCG----IGSEISARIME 153 (158)
Q Consensus 125 ~~~~~~vvv-vEe~~~~GG----~g~~i~~~l~~ 153 (158)
+++.+.|++ .|-=..+|| .|+...+.++.
T Consensus 186 m~~vd~VivGAd~v~~nG~v~nkiGT~~~A~~Ak 219 (310)
T PRK08535 186 MKDVDKVVVGADAITANGAVINKIGTSQIALAAH 219 (310)
T ss_pred HHhCCEEEECccEEecCCCEEeHHhHHHHHHHHH
Confidence 445555554 232223444 46655555543
No 248
>cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria. PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity.
Probab=39.22 E-value=41 Score=25.92 Aligned_cols=24 Identities=25% Similarity=0.169 Sum_probs=21.9
Q ss_pred ccCCHHHHHHHHHHHHhCCCcEEE
Q psy7291 3 SPYNSEDAKGLLKAAIRDPDPVVF 26 (158)
Q Consensus 3 ~P~d~~e~~~~l~~a~~~~~P~~i 26 (158)
...++.|+.++++++++.++|++|
T Consensus 172 ~v~~~~el~~al~~a~~~~gP~lI 195 (235)
T cd03376 172 SVAYPEDLYKKVKKALSIEGPAYI 195 (235)
T ss_pred cCCCHHHHHHHHHHHHhCCCCEEE
Confidence 468899999999999999999998
No 249
>TIGR00442 hisS histidyl-tRNA synthetase. This model finds a histidyl-tRNA synthetase in every completed genome. Apparent second copies from Bacillus subtilis, Synechocystis sp., and Aquifex aeolicus are slightly shorter, more closely related to each other than to other hisS proteins, and actually serve as regulatory subunits for an enzyme of histidine biosynthesis. They were excluded from the seed alignment and score much lower than do single copy histidyl-tRNA synthetases of other genomes not included in the seed alignment. These putative second copies of HisS score below the trusted cutoff. The regulatory protein kinase GCN2 of Saccharomyces cerevisiae (YDR283c), and related proteins from other species designated eIF-2 alpha kinase, have a domain closely related to histidyl-tRNA synthetase that may serve to detect and respond to uncharged tRNA(his), an indicator of amino acid starvation; these regulatory proteins are not orthologous and so score below the noise cutoff.
Probab=39.18 E-value=1.3e+02 Score=24.79 Aligned_cols=57 Identities=25% Similarity=0.310 Sum_probs=38.7
Q ss_pred CcEEEEEech-hHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHh-CCCeEEEEeC
Q psy7291 77 KDITIVGHSK-AVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVM-KTNYLISVEG 136 (158)
Q Consensus 77 ~~~~ii~~G~-~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~-~~~~vvvvEe 136 (158)
.++.|++.+. ....+.+.+..|.+.|+.+.+ ++.. +++. +.+...-+ +...++++.+
T Consensus 323 ~~vlV~~~~~~~~~~~~~i~~~Lr~~gi~v~~-~~~~-~~l~-k~~~~a~~~g~~~~i~ig~ 381 (397)
T TIGR00442 323 PDVYVVPLGEEAELEALKLAQKLRKAGIRVEV-DLGG-RKLK-KQLKYADKLGARFAVILGE 381 (397)
T ss_pred CcEEEEEeCHHHHHHHHHHHHHHHhCCCeEEE-eCCC-CCHH-HHHHHHHHcCCCEEEEECh
Confidence 5788888775 557788999999999999865 3332 4453 34444332 4578888865
No 250
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=38.95 E-value=83 Score=23.79 Aligned_cols=33 Identities=18% Similarity=0.206 Sum_probs=26.3
Q ss_pred CCcEEEEEechhHHH--HHHHHHHHHhCCCcEEEE
Q psy7291 76 GKDITIVGHSKAVET--ALDAAKILAGQGIDAEVI 108 (158)
Q Consensus 76 g~~~~ii~~G~~~~~--a~ea~~~L~~~gi~~~vi 108 (158)
|+++++--+|+.... +.+.++.|.+.|.++.++
T Consensus 5 ~k~IllgVTGsiaa~k~a~~lir~L~k~G~~V~vv 39 (196)
T PRK08305 5 GKRIGFGLTGSHCTYDEVMPEIEKLVDEGAEVTPI 39 (196)
T ss_pred CCEEEEEEcCHHHHHHHHHHHHHHHHhCcCEEEEE
Confidence 677888888876544 478899999999998887
No 251
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=38.83 E-value=57 Score=23.43 Aligned_cols=34 Identities=24% Similarity=0.236 Sum_probs=24.7
Q ss_pred CCCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEec
Q psy7291 75 TGKDITIVGHSKAVETALDAAKILAGQGIDAEVINLR 111 (158)
Q Consensus 75 ~g~~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~ 111 (158)
+|..++||+.|..... -++.|.+.|.++.||+..
T Consensus 12 ~~~~vlVvGGG~va~r---ka~~Ll~~ga~V~VIsp~ 45 (157)
T PRK06719 12 HNKVVVIIGGGKIAYR---KASGLKDTGAFVTVVSPE 45 (157)
T ss_pred CCCEEEEECCCHHHHH---HHHHHHhCCCEEEEEcCc
Confidence 3788999999987654 244566678899999643
No 252
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.
Probab=38.83 E-value=2e+02 Score=23.24 Aligned_cols=54 Identities=22% Similarity=0.240 Sum_probs=35.2
Q ss_pred EEEEEechhHHHHHHHHHHHHhCCCcEEEEEecc-------------ccCCCHHHHHHHHhCCCeEEEEeC
Q psy7291 79 ITIVGHSKAVETALDAAKILAGQGIDAEVINLRS-------------LRPLDIETITKSVMKTNYLISVEG 136 (158)
Q Consensus 79 ~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~-------------l~Pld~~~l~~~~~~~~~vvvvEe 136 (158)
+.||+.|.......+++++| |+++-+++..- ..-.|.+.+.++++..+ +++.|.
T Consensus 2 igiiG~gql~~~l~~aa~~l---G~~v~~~d~~~~~p~~~~ad~~~~~~~~d~~~i~~~a~~~d-vit~e~ 68 (352)
T TIGR01161 2 VGILGGGQLGRMLALAARPL---GIKVHVLDPDANSPAVQVADHVVLAPFFDPAAIRELAESCD-VITFEF 68 (352)
T ss_pred EEEECCCHHHHHHHHHHHHc---CCEEEEECCCCCCChhHhCceeEeCCCCCHHHHHHHHhhCC-EEEeCc
Confidence 67888887766666665554 77777765432 12246677888887764 667764
No 253
>TIGR03566 FMN_reduc_MsuE FMN reductase, MsuE subfamily. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the NADH-dependent enzyme MsuE from Pseudomonas aeruginosa, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. The NADP-dependent enzyme from E. coli is outside the scope of this model.
Probab=38.78 E-value=1.5e+02 Score=21.35 Aligned_cols=62 Identities=18% Similarity=0.155 Sum_probs=38.6
Q ss_pred HHHHHHHHHH-hCCCcEEEEEecccc-CC---------CH--HHHHHHHhCCCeEEEEeCCcCCCChHHHHHHHHH
Q psy7291 90 TALDAAKILA-GQGIDAEVINLRSLR-PL---------DI--ETITKSVMKTNYLISVEGGWPQCGIGSEISARIM 152 (158)
Q Consensus 90 ~a~ea~~~L~-~~gi~~~vi~~~~l~-Pl---------d~--~~l~~~~~~~~~vvvvEe~~~~GG~g~~i~~~l~ 152 (158)
.+..+.+.+. +.|.++.++++.-+. |+ +. +.+.+.+..++.||++=--+ .|++...+..++-
T Consensus 18 l~~~~~~~l~~~~g~ev~~idL~~~~~~~~~~~~~~~~~~~~~~~~~~i~~AD~iIi~tP~Y-~~s~~~~LKn~lD 92 (174)
T TIGR03566 18 LVEALVAELAARLGISPRTIDLADLAPSLGGALWRSQLPPDAERILQAIESADLLVVGSPVY-RGSYTGLFKHLFD 92 (174)
T ss_pred HHHHHHHHHHHhcCCeEEEEEhhhcChhhccccccCCCCHHHHHHHHHHHHCCEEEEECCcC-cCcCcHHHHHHHH
Confidence 3334445554 447888888876542 11 22 24556666778777777666 6888877776663
No 254
>PRK13903 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=38.69 E-value=38 Score=28.14 Aligned_cols=27 Identities=15% Similarity=0.271 Sum_probs=23.9
Q ss_pred CcccCCHHHHHHHHHHHHhCCCcEEEE
Q psy7291 1 VVSPYNSEDAKGLLKAAIRDPDPVVFL 27 (158)
Q Consensus 1 V~~P~d~~e~~~~l~~a~~~~~P~~iR 27 (158)
++.|.|.+|+.++++++.+.+.|++|+
T Consensus 36 ~~~p~s~edl~~~l~~a~~~~~p~~vl 62 (363)
T PRK13903 36 LVTCTSTEELVAAVRELDAAGEPLLVL 62 (363)
T ss_pred EEEeCCHHHHHHHHHHHHHCCCCEEEE
Confidence 367999999999999999888898886
No 255
>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional
Probab=38.53 E-value=2.1e+02 Score=22.96 Aligned_cols=24 Identities=21% Similarity=0.347 Sum_probs=10.5
Q ss_pred CCcEEEEEeccccCCCHHHHHHHH
Q psy7291 102 GIDAEVINLRSLRPLDIETITKSV 125 (158)
Q Consensus 102 gi~~~vi~~~~l~Pld~~~l~~~~ 125 (158)
|.++..+....-..+|.+.+.+.+
T Consensus 103 g~~~~~i~~~~~~~~d~~~l~~~l 126 (368)
T PRK13479 103 GIAHVVLDTGEDEPPDAAEVEAAL 126 (368)
T ss_pred CCcEEEEECCCCCCCCHHHHHHHH
Confidence 455554444322234444444444
No 256
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=38.48 E-value=86 Score=23.22 Aligned_cols=32 Identities=22% Similarity=0.275 Sum_probs=24.7
Q ss_pred CcEEEEEechh-HHHHHHHHHHHHhCCCcEEEE
Q psy7291 77 KDITIVGHSKA-VETALDAAKILAGQGIDAEVI 108 (158)
Q Consensus 77 ~~~~ii~~G~~-~~~a~ea~~~L~~~gi~~~vi 108 (158)
++++|.-+|+. +..+.+.++.|++.|.++.++
T Consensus 2 k~Ill~vtGsiaa~~~~~li~~L~~~g~~V~vv 34 (182)
T PRK07313 2 KNILLAVSGSIAAYKAADLTSQLTKRGYQVTVL 34 (182)
T ss_pred CEEEEEEeChHHHHHHHHHHHHHHHCCCEEEEE
Confidence 35777777874 456788889999889888877
No 257
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=38.35 E-value=1.1e+02 Score=24.53 Aligned_cols=75 Identities=17% Similarity=0.158 Sum_probs=46.3
Q ss_pred CCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHH----HHhCC-CeEEEEeCCcCCCChHHHHHHH
Q psy7291 76 GKDITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITK----SVMKT-NYLISVEGGWPQCGIGSEISAR 150 (158)
Q Consensus 76 g~~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~----~~~~~-~~vvvvEe~~~~GG~g~~i~~~ 150 (158)
++--+|++.|..+..+.+.++..++-|.+.-++-.++..+.+++.+.+ +++.. -.|++.. ...-.+..++...
T Consensus 75 ~~~pvi~gv~~~t~~~i~~~~~a~~~Gadav~~~pP~y~~~~~~~i~~~f~~va~~~~lpi~lYn--~~g~~l~~~~l~~ 152 (303)
T PRK03620 75 GRVPVIAGAGGGTAQAIEYAQAAERAGADGILLLPPYLTEAPQEGLAAHVEAVCKSTDLGVIVYN--RDNAVLTADTLAR 152 (303)
T ss_pred CCCcEEEecCCCHHHHHHHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEc--CCCCCCCHHHHHH
Confidence 333455677766777888788777788888777777666666665444 33333 3566665 2111456666666
Q ss_pred HH
Q psy7291 151 IM 152 (158)
Q Consensus 151 l~ 152 (158)
|.
T Consensus 153 L~ 154 (303)
T PRK03620 153 LA 154 (303)
T ss_pred HH
Confidence 66
No 258
>PRK00170 azoreductase; Reviewed
Probab=38.23 E-value=1.6e+02 Score=21.50 Aligned_cols=62 Identities=13% Similarity=0.177 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHhC--CCcEEEEEecccc-C-CCH------------------------HHHHHHHhCCCeEEEEeCCcCC
Q psy7291 89 ETALDAAKILAGQ--GIDAEVINLRSLR-P-LDI------------------------ETITKSVMKTNYLISVEGGWPQ 140 (158)
Q Consensus 89 ~~a~ea~~~L~~~--gi~~~vi~~~~l~-P-ld~------------------------~~l~~~~~~~~~vvvvEe~~~~ 140 (158)
..+...++.|+++ |.++.++|+.... | ++. +.+.+.+..++.||++=--+ .
T Consensus 20 ~l~~~~~~~l~~~~~~~~v~~~dL~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~i~~AD~iV~~sP~y-~ 98 (201)
T PRK00170 20 QLGDAFIEAYKEAHPDDEVTVRDLAAEPIPVLDGEVVGALGKSAETLTPRQQEAVALSDELLEEFLAADKIVIAAPMY-N 98 (201)
T ss_pred HHHHHHHHHHHHhCCCCeEEEEECCCCCCCCCCHHHHHhhcCCcccCCHHHHHHHHHHHHHHHHHHHCCEEEEeeccc-c
Confidence 3444556677777 8899999986432 2 221 12344455677777776655 6
Q ss_pred CChHHHHHHHH
Q psy7291 141 CGIGSEISARI 151 (158)
Q Consensus 141 GG~g~~i~~~l 151 (158)
+++...+..++
T Consensus 99 ~~~pa~LK~~i 109 (201)
T PRK00170 99 FSIPTQLKAYI 109 (201)
T ss_pred cCCcHHHHHHH
Confidence 77777776665
No 259
>PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed
Probab=38.13 E-value=43 Score=26.68 Aligned_cols=25 Identities=16% Similarity=0.119 Sum_probs=22.6
Q ss_pred ccCCHHHHHHHHHHHHhCCCcEEEE
Q psy7291 3 SPYNSEDAKGLLKAAIRDPDPVVFL 27 (158)
Q Consensus 3 ~P~d~~e~~~~l~~a~~~~~P~~iR 27 (158)
...++.|+..+++.|+++++|++|-
T Consensus 173 ~v~~~~el~~al~~Al~~~Gp~lIe 197 (277)
T PRK09628 173 SVIDPQKLEKLLVKGFSHKGFSFFD 197 (277)
T ss_pred ccCCHHHHHHHHHHHHhCCCCEEEE
Confidence 4688999999999999999999984
No 260
>cd01450 vWFA_subfamily_ECM Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=37.97 E-value=70 Score=21.86 Aligned_cols=49 Identities=22% Similarity=0.303 Sum_probs=32.7
Q ss_pred CcEEEEEechhHHH--HHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhCC
Q psy7291 77 KDITIVGHSKAVET--ALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKT 128 (158)
Q Consensus 77 ~~~~ii~~G~~~~~--a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~ 128 (158)
.-+++++-|..... ..++++.++++++.+-.|.+. +.+.+.+.++...+
T Consensus 105 ~~iiliTDG~~~~~~~~~~~~~~~~~~~v~v~~i~~g---~~~~~~l~~la~~~ 155 (161)
T cd01450 105 KVIIVLTDGRSDDGGDPKEAAAKLKDEGIKVFVVGVG---PADEEELREIASCP 155 (161)
T ss_pred eEEEEECCCCCCCCcchHHHHHHHHHCCCEEEEEecc---ccCHHHHHHHhCCC
Confidence 35777888865432 677788888887776666543 36777777776553
No 261
>PRK09739 hypothetical protein; Provisional
Probab=37.91 E-value=1.6e+02 Score=21.63 Aligned_cols=62 Identities=15% Similarity=0.216 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHhCCCcEEEEEecccc--C----------------CC--HHHHHHHHhCCCeEEEEeCCcCCCChHHHHH
Q psy7291 89 ETALDAAKILAGQGIDAEVINLRSLR--P----------------LD--IETITKSVMKTNYLISVEGGWPQCGIGSEIS 148 (158)
Q Consensus 89 ~~a~ea~~~L~~~gi~~~vi~~~~l~--P----------------ld--~~~l~~~~~~~~~vvvvEe~~~~GG~g~~i~ 148 (158)
..+...++.+++.|..++++|+.-.. | ++ .+.+.+.+..++.||+.=--+ .+++.+.+.
T Consensus 21 ~l~~~~~~~~~~~g~~v~~~dL~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~AD~iV~~~P~y-~~~~Pa~LK 99 (199)
T PRK09739 21 KVAEAIHQRAQERGHQVEELDLYRSGFDPVLTPEDEPDWKNPDKRYSPEVHQLYSELLEHDALVFVFPLW-WYSFPAMLK 99 (199)
T ss_pred HHHHHHHHHHHHCCCEEEEEEhhhhCCCCCCCHHHhhhhcccCCCCCHHHHHHHHHHHhCCEEEEECchh-hhcchHHHH
Confidence 34445566788888899999876531 1 11 134455566777777766555 677777766
Q ss_pred HHH
Q psy7291 149 ARI 151 (158)
Q Consensus 149 ~~l 151 (158)
.++
T Consensus 100 ~~i 102 (199)
T PRK09739 100 GYI 102 (199)
T ss_pred HHH
Confidence 655
No 262
>PRK14649 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=37.61 E-value=43 Score=26.86 Aligned_cols=26 Identities=23% Similarity=0.307 Sum_probs=23.6
Q ss_pred cccCCHHHHHHHHHHHHhCCCcEEEE
Q psy7291 2 VSPYNSEDAKGLLKAAIRDPDPVVFL 27 (158)
Q Consensus 2 ~~P~d~~e~~~~l~~a~~~~~P~~iR 27 (158)
+.|.+.+|+..+++++.+++-|++|+
T Consensus 25 v~p~~~~dl~~~l~~~~~~~ip~~vl 50 (295)
T PRK14649 25 VEPTTPDEAIAAAAWAEQRQLPLFWL 50 (295)
T ss_pred EEcCCHHHHHHHHHHHHHCCCCEEEE
Confidence 57999999999999999888899986
No 263
>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....
Probab=37.49 E-value=2.2e+02 Score=22.93 Aligned_cols=79 Identities=15% Similarity=0.151 Sum_probs=49.8
Q ss_pred CCcEEEEEechhHHHHHHHHHHH-HhCCCcEEEEEeccccCCCHHHHHHHHhCCCeEEEEeCC-cCCCCh--HHHHHHHH
Q psy7291 76 GKDITIVGHSKAVETALDAAKIL-AGQGIDAEVINLRSLRPLDIETITKSVMKTNYLISVEGG-WPQCGI--GSEISARI 151 (158)
Q Consensus 76 g~~~~ii~~G~~~~~a~ea~~~L-~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~~~vvvvEe~-~~~GG~--g~~i~~~l 151 (158)
|..+++...|..... .+++.+ +..|.++.++....=..+|.+.+.+.++..-+++++-.. +..|-+ =..|++..
T Consensus 88 g~~vl~~~~~~~s~~--~~~~~~~~~~g~~v~~i~~~~~~~~~~~~~~~~l~~~~~lv~~~~~~~~tG~~~pi~~I~~~~ 165 (371)
T PF00266_consen 88 GDEVLVTSNEHPSNR--YPWEEIAKRKGAEVRVIPADPGGSLDLEDLEEALNPDTRLVSISHVENSTGVRNPIEEIAKLA 165 (371)
T ss_dssp TCEEEEEESSHHHHH--HHHHHHHHHTTEEEEEEEEGTTSSCSHHHHHHHHHTTESEEEEESBETTTTBBSSHHHHHHHH
T ss_pred ccccccccccccccc--cccccccccchhhhccccccccchhhhhhhhhhhccccceEEeecccccccEEeeeceehhhh
Confidence 566777777765544 122223 256888888888766678888888888755556666554 334433 26777777
Q ss_pred HcCCC
Q psy7291 152 MEIPY 156 (158)
Q Consensus 152 ~~~~~ 156 (158)
.++|.
T Consensus 166 ~~~~~ 170 (371)
T PF00266_consen 166 HEYGA 170 (371)
T ss_dssp HHTTS
T ss_pred hccCC
Confidence 77653
No 264
>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=37.47 E-value=2e+02 Score=24.37 Aligned_cols=42 Identities=17% Similarity=0.101 Sum_probs=25.8
Q ss_pred CCCHHHHHHHHhCCCeEEEEeCC-cCCCChH--HHHHHHHHcCCC
Q psy7291 115 PLDIETITKSVMKTNYLISVEGG-WPQCGIG--SEISARIMEIPY 156 (158)
Q Consensus 115 Pld~~~l~~~~~~~~~vvvvEe~-~~~GG~g--~~i~~~l~~~~~ 156 (158)
|.|.+.+.+.+....++|++|.- ++.|-.. +.|++...++|+
T Consensus 142 ~~d~e~l~~ai~~~tklV~ie~~sNp~G~v~Dl~~I~~la~~~gi 186 (436)
T PRK07812 142 PDDLDAWRAAVRPNTKAFFAETISNPQIDVLDIPGVAEVAHEAGV 186 (436)
T ss_pred CCCHHHHHHhCCCCCeEEEEECCCCCCCeecCHHHHHHHHHHcCC
Confidence 44667777777655567778763 3445443 567776666654
No 265
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=37.47 E-value=1.6e+02 Score=24.30 Aligned_cols=33 Identities=21% Similarity=0.410 Sum_probs=24.0
Q ss_pred CCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEec
Q psy7291 76 GKDITIVGHSKAVETALDAAKILAGQGIDAEVINLR 111 (158)
Q Consensus 76 g~~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~ 111 (158)
+.+++|++.|.+...+.+ .|+..|.++.+++.+
T Consensus 167 ~~~VlViGaG~vG~~aa~---~a~~lGa~V~v~d~~ 199 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAK---MANGLGATVTILDIN 199 (370)
T ss_pred CceEEEEcCCHHHHHHHH---HHHHCCCeEEEEECC
Confidence 467999999987666544 455558888888763
No 266
>PLN02805 D-lactate dehydrogenase [cytochrome]
Probab=37.47 E-value=39 Score=29.71 Aligned_cols=28 Identities=25% Similarity=0.344 Sum_probs=24.7
Q ss_pred CcccCCHHHHHHHHHHHHhCCCcEEEEe
Q psy7291 1 VVSPYNSEDAKGLLKAAIRDPDPVVFLE 28 (158)
Q Consensus 1 V~~P~d~~e~~~~l~~a~~~~~P~~iR~ 28 (158)
|+.|.+.+|+.++++.|.+++-|+..|-
T Consensus 137 Vv~P~s~eeV~~ivk~a~~~~ipv~prG 164 (555)
T PLN02805 137 VVFPRSEEEVSKIVKSCNKYKVPIVPYG 164 (555)
T ss_pred EEEcCCHHHHHHHHHHHHHCCCcEEEEC
Confidence 5689999999999999998888888873
No 267
>cd02018 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyruvate ferredoxin/flavodoxin oxidoreductase (PFOR) subfamily, TPP-binding module; PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. PFORs can be homodimeric, heterodimeric, or heterotetrameric, depending on the organism. These enzymes are dependent on TPP and a divalent metal cation as cofactors.
Probab=37.38 E-value=46 Score=25.68 Aligned_cols=25 Identities=24% Similarity=0.268 Sum_probs=22.4
Q ss_pred ccCCHHHHHHHHHHHHh-CCCcEEEE
Q psy7291 3 SPYNSEDAKGLLKAAIR-DPDPVVFL 27 (158)
Q Consensus 3 ~P~d~~e~~~~l~~a~~-~~~P~~iR 27 (158)
.+.++.|++.+++++++ .++|++|-
T Consensus 174 ~v~~~~~l~~al~~al~~~~GP~lI~ 199 (237)
T cd02018 174 SPALKKHFLKVVKEAISRTDGPTFIH 199 (237)
T ss_pred ccCCHHHHHHHHHHHHhcCCCCEEEE
Confidence 37889999999999998 99999983
No 268
>PLN03139 formate dehydrogenase; Provisional
Probab=37.31 E-value=1.2e+02 Score=25.30 Aligned_cols=58 Identities=14% Similarity=0.147 Sum_probs=36.4
Q ss_pred ccCCCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccC-----CC---HHHHHHHHhCCCeEEE
Q psy7291 73 RVTGKDITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRP-----LD---IETITKSVMKTNYLIS 133 (158)
Q Consensus 73 ~~~g~~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~P-----ld---~~~l~~~~~~~~~vvv 133 (158)
...|+.+.||++|.+...+ ++.|+.-|.++.+++.....+ +. .+.+.++++..+.|++
T Consensus 196 ~L~gktVGIVG~G~IG~~v---A~~L~afG~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~sDvV~l 261 (386)
T PLN03139 196 DLEGKTVGTVGAGRIGRLL---LQRLKPFNCNLLYHDRLKMDPELEKETGAKFEEDLDAMLPKCDVVVI 261 (386)
T ss_pred CCCCCEEEEEeecHHHHHH---HHHHHHCCCEEEEECCCCcchhhHhhcCceecCCHHHHHhhCCEEEE
Confidence 4558899999999988764 445555688877776542211 10 1246777777664444
No 269
>KOG2018|consensus
Probab=37.23 E-value=37 Score=28.04 Aligned_cols=72 Identities=19% Similarity=0.224 Sum_probs=40.9
Q ss_pred EEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhCC--------------CeEEEEeCCcCCCChHH
Q psy7291 80 TIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKT--------------NYLISVEGGWPQCGIGS 145 (158)
Q Consensus 80 ~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~--------------~~vvvvEe~~~~GG~g~ 145 (158)
++|+.|+ ...++.|.+..+..--....=+..--.++|++.+.+.+.+. ..|++|= .||.|+
T Consensus 13 al~~v~~-t~~~~ta~k~~k~s~a~~~~k~~sk~~~ydd~lireqLarN~aFfGee~m~kl~~syVVVVG----~GgVGS 87 (430)
T KOG2018|consen 13 ALISVFS-TQLALTAGKGIKLSTAPDKNKNGSKPRQYDDELIREQLARNYAFFGEEGMEKLTNSYVVVVG----AGGVGS 87 (430)
T ss_pred HHHHHHH-HHHHHHhhhhheecccCCcccCCCCcccccHHHHHHHHHhHHhhhhhhHHHHhcCcEEEEEe----cCchhH
Confidence 3344444 44555555433221111111233444578888887766531 2455553 599999
Q ss_pred HHHHHHHcCCC
Q psy7291 146 EISARIMEIPY 156 (158)
Q Consensus 146 ~i~~~l~~~~~ 156 (158)
.++..|..+|.
T Consensus 88 wv~nmL~RSG~ 98 (430)
T KOG2018|consen 88 WVANMLLRSGV 98 (430)
T ss_pred HHHHHHHHhcC
Confidence 99999998875
No 270
>COG1504 Uncharacterized conserved protein [Function unknown]
Probab=37.15 E-value=49 Score=22.85 Aligned_cols=52 Identities=21% Similarity=0.366 Sum_probs=31.5
Q ss_pred CCcEEEEEech--hHHHHHHHHHHHHhCCCcEEEEEeccccCCCHH--HHHHHHhCCCeEEEE
Q psy7291 76 GKDITIVGHSK--AVETALDAAKILAGQGIDAEVINLRSLRPLDIE--TITKSVMKTNYLISV 134 (158)
Q Consensus 76 g~~~~ii~~G~--~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~--~l~~~~~~~~~vvvv 134 (158)
+.+++||++|. ++...-+|.+.+++.+ +.|+-+++ |+. ...++.++ ++|+.+
T Consensus 61 ~~E~ivvGTG~~G~l~l~~ea~e~~r~k~--~~vi~~pT----~EAikr~nel~~~-krV~ai 116 (121)
T COG1504 61 GPEVIVVGTGQSGMLELSEEAREFFRKKG--CEVIELPT----PEAIKRYNELRGK-KRVAAI 116 (121)
T ss_pred CCcEEEEecCceeEEEeCHHHHHHHHhcC--CeEEEeCC----HHHHHHHHHHhcc-ceEEEE
Confidence 88999999996 4445556666677665 45664444 543 23444444 566543
No 271
>TIGR00106 uncharacterized protein, MTH1187 family. This protein has been crystallized in both Methanobacterium thermoautotrophicum and yeast, but its function remains unknown. Both crystal structures showed sulfate ions bound at the interface of two dimers to form a tetramer.
Probab=37.15 E-value=81 Score=20.93 Aligned_cols=36 Identities=17% Similarity=0.310 Sum_probs=26.8
Q ss_pred cEEEEEec----hhHHHHHHHHHHHHhCCCcEEEEEeccc
Q psy7291 78 DITIVGHS----KAVETALDAAKILAGQGIDAEVINLRSL 113 (158)
Q Consensus 78 ~~~ii~~G----~~~~~a~ea~~~L~~~gi~~~vi~~~~l 113 (158)
+++++-.| +....+-++.+.|++.|++..+=-+.+.
T Consensus 4 eisv~P~g~~~~s~s~yVa~~i~~l~~sGl~y~~~pm~T~ 43 (97)
T TIGR00106 4 EVSIIPIGTVGASVSSYVAAAIEVLKESGLKYELHPMGTL 43 (97)
T ss_pred EEEEeecCCCCCcHHHHHHHHHHHHHHcCCCeEecCCccE
Confidence 46666666 5677888899999999998777555554
No 272
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=37.09 E-value=1.4e+02 Score=24.40 Aligned_cols=57 Identities=21% Similarity=0.187 Sum_probs=38.1
Q ss_pred CcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEecc-------------ccCCCHHHHHHHHhCCCeEEEEeCC
Q psy7291 77 KDITIVGHSKAVETALDAAKILAGQGIDAEVINLRS-------------LRPLDIETITKSVMKTNYLISVEGG 137 (158)
Q Consensus 77 ~~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~-------------l~Pld~~~l~~~~~~~~~vvvvEe~ 137 (158)
..+.||+.|........++..| |+++-+++..- ....|.+.+.++++..+ ++++|..
T Consensus 3 ~~igilG~Gql~~ml~~aa~~l---G~~v~~~d~~~~~pa~~~ad~~~~~~~~D~~~l~~~a~~~d-vit~e~e 72 (372)
T PRK06019 3 KTIGIIGGGQLGRMLALAAAPL---GYKVIVLDPDPDSPAAQVADEVIVADYDDVAALRELAEQCD-VITYEFE 72 (372)
T ss_pred CEEEEECCCHHHHHHHHHHHHc---CCEEEEEeCCCCCchhHhCceEEecCCCCHHHHHHHHhcCC-EEEeCcC
Confidence 4588999987766665555554 88888876532 12345667888888664 6788743
No 273
>TIGR03586 PseI pseudaminic acid synthase.
Probab=36.89 E-value=2.3e+02 Score=23.13 Aligned_cols=72 Identities=18% Similarity=0.185 Sum_probs=45.4
Q ss_pred CcEEEEEech-hHHHHHHHHHHHHhCCC-cEEEEEeccccCCCHHH-----HHHHHhCCCeEEEEeCCcCCCChHHHHHH
Q psy7291 77 KDITIVGHSK-AVETALDAAKILAGQGI-DAEVINLRSLRPLDIET-----ITKSVMKTNYLISVEGGWPQCGIGSEISA 149 (158)
Q Consensus 77 ~~~~ii~~G~-~~~~a~ea~~~L~~~gi-~~~vi~~~~l~Pld~~~-----l~~~~~~~~~vvvvEe~~~~GG~g~~i~~ 149 (158)
++=+|+++|. .......|++.+.+.|. ++.+++..+-+|-+.+. +..+-+.++..|-+-+|. .|..-.+++
T Consensus 134 gkPvilstG~~t~~Ei~~Av~~i~~~g~~~i~LlhC~s~YP~~~~~~nL~~i~~lk~~f~~pVG~SDHt--~G~~~~~aA 211 (327)
T TIGR03586 134 GKPIIMSTGIATLEEIQEAVEACREAGCKDLVLLKCTSSYPAPLEDANLRTIPDLAERFNVPVGLSDHT--LGILAPVAA 211 (327)
T ss_pred CCcEEEECCCCCHHHHHHHHHHHHHCCCCcEEEEecCCCCCCCcccCCHHHHHHHHHHhCCCEEeeCCC--CchHHHHHH
Confidence 4567788885 66888899999988776 68887766666755542 332323344444356787 355444444
Q ss_pred H
Q psy7291 150 R 150 (158)
Q Consensus 150 ~ 150 (158)
.
T Consensus 212 v 212 (327)
T TIGR03586 212 V 212 (327)
T ss_pred H
Confidence 3
No 274
>PF07881 Fucose_iso_N1: L-fucose isomerase, first N-terminal domain; InterPro: IPR012888 Proteins containing this domain are similar to L-fucose isomerase expressed by Escherichia coli (P11552 from SWISSPROT, 5.3.1.3 from EC). This enzyme corresponds to glucose-6-phosphate isomerase in glycolysis, and converts an aldo-hexose to a ketose to prepare it for aldol cleavage. The enzyme is a hexamer, with each subunit being wedge-shaped and composed of three domains. Both domains 1 and 2 contain central parallel beta-sheets with surrounding alpha helices. Domain 1 demonstrates the beta-alpha-beta-alpha- beta Rossman fold. The active centre is shared between pairs of subunits related along the molecular three-fold axis, with domains 2 and 3 from one subunit providing most of the substrate-contacting residues, and domain 1 from the adjacent subunit contributing some other residues []. ; GO: 0008736 L-fucose isomerase activity, 0006004 fucose metabolic process, 0005737 cytoplasm; PDB: 3A9R_A 3A9T_C 3A9S_C 1FUI_E.
Probab=36.82 E-value=87 Score=23.21 Aligned_cols=68 Identities=12% Similarity=0.030 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhCCCeEEEEeCCcCCCChH-HHHHHHHHcCCC
Q psy7291 88 VETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKTNYLISVEGGWPQCGIG-SEISARIMEIPY 156 (158)
Q Consensus 88 ~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~~~vvvvEe~~~~GG~g-~~i~~~l~~~~~ 156 (158)
...|..+.++++.+|..+++..-++ |-++.+.+.-....-+.|+-+-.....|-.+ ......+.+.|+
T Consensus 62 v~eAa~~ae~f~~~~V~~titvtpc-Wcy~~etmd~~~~~p~aiwgfngterPGaVyLaAa~aa~~Q~Gi 130 (171)
T PF07881_consen 62 VAEAAACAEKFKREGVGVTITVTPC-WCYGSETMDMDPNTPKAIWGFNGTERPGAVYLAAALAAHNQKGI 130 (171)
T ss_dssp HHHHHHHHHHHHCCTEEEEEEEESS----HHHHS---TTS-EEEEE---SSS-HHHHHHHHHHHHHHCT-
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEee-eecchhhhccCcCCCccEEeecCCCCCcHHHHHHHHHHHhcCCC
Confidence 3556667889999999998887776 7888887665555556788887666666444 334455666665
No 275
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=36.77 E-value=50 Score=27.04 Aligned_cols=29 Identities=24% Similarity=0.434 Sum_probs=21.3
Q ss_pred CCcEEEEEechhHHHHHHHHHHHHhCCCcEEE
Q psy7291 76 GKDITIVGHSKAVETALDAAKILAGQGIDAEV 107 (158)
Q Consensus 76 g~~~~ii~~G~~~~~a~ea~~~L~~~gi~~~v 107 (158)
|+.++||+|||..+. . +..|++.|+++.+
T Consensus 18 gK~iaIIGYGsQG~a--h-alNLRDSGlnVii 46 (338)
T COG0059 18 GKKVAIIGYGSQGHA--Q-ALNLRDSGLNVII 46 (338)
T ss_pred CCeEEEEecChHHHH--H-HhhhhhcCCcEEE
Confidence 789999999997653 1 2357888988543
No 276
>PRK05920 aromatic acid decarboxylase; Validated
Probab=36.74 E-value=94 Score=23.62 Aligned_cols=33 Identities=9% Similarity=0.053 Sum_probs=25.1
Q ss_pred CCcEEEEEechhH-HHHHHHHHHHHhCCCcEEEE
Q psy7291 76 GKDITIVGHSKAV-ETALDAAKILAGQGIDAEVI 108 (158)
Q Consensus 76 g~~~~ii~~G~~~-~~a~ea~~~L~~~gi~~~vi 108 (158)
+.+++|--+|+.. ..+.+.++.|.+.|.++.++
T Consensus 3 ~krIllgITGsiaa~ka~~lvr~L~~~g~~V~vi 36 (204)
T PRK05920 3 MKRIVLAITGASGAIYGVRLLECLLAADYEVHLV 36 (204)
T ss_pred CCEEEEEEeCHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 5667777777654 56777888998889888777
No 277
>PRK11104 hemG protoporphyrinogen oxidase; Provisional
Probab=36.69 E-value=1.4e+02 Score=21.78 Aligned_cols=60 Identities=15% Similarity=0.138 Sum_probs=32.6
Q ss_pred chhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhCCCeEEEEeCCcCCCChHHHHHHHHHc
Q psy7291 85 SKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKTNYLISVEGGWPQCGIGSEISARIME 153 (158)
Q Consensus 85 G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~~~vvvvEe~~~~GG~g~~i~~~l~~ 153 (158)
|++-..|...++.|.. |+.+.++++.-..+. -+..++.|++-= ..-.|++...+..++.+
T Consensus 12 G~T~~iA~~Ia~~l~~-g~~v~~~~~~~~~~~-------~l~~yD~vIlGs-pi~~G~~~~~~~~fl~~ 71 (177)
T PRK11104 12 GQTRKIASYIASELKE-GIQCDVVNLHRIEEP-------DLSDYDRVVIGA-SIRYGHFHSALYKFVKK 71 (177)
T ss_pred ChHHHHHHHHHHHhCC-CCeEEEEEhhhcCcc-------CHHHCCEEEEEC-ccccCCcCHHHHHHHHH
Confidence 3343444444555655 777888876643321 134566555443 33357776666666543
No 278
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=36.48 E-value=65 Score=22.09 Aligned_cols=37 Identities=19% Similarity=0.330 Sum_probs=26.2
Q ss_pred CCcEEEEEechhHHHHHHHHHHHHhCCC-cEEEEEeccccC
Q psy7291 76 GKDITIVGHSKAVETALDAAKILAGQGI-DAEVINLRSLRP 115 (158)
Q Consensus 76 g~~~~ii~~G~~~~~a~ea~~~L~~~gi-~~~vi~~~~l~P 115 (158)
..+++|++.|+....+.+ .|...|+ ++.++|...+.|
T Consensus 2 ~~~v~iiG~G~vGs~va~---~L~~~Gv~~i~lvD~d~v~~ 39 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAK---NLARSGVGKITLVDDDIVEP 39 (135)
T ss_dssp T-EEEEESTSHHHHHHHH---HHHHHTTSEEEEEESSBB-G
T ss_pred CCEEEEECcCHHHHHHHH---HHHHhCCCceeecCCcceee
Confidence 467999999998887654 4444477 589998887754
No 279
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=36.43 E-value=68 Score=21.07 Aligned_cols=32 Identities=22% Similarity=0.131 Sum_probs=19.9
Q ss_pred CCcEEEEEechhHHHHHHHHHHHHhCCCcEEE
Q psy7291 76 GKDITIVGHSKAVETALDAAKILAGQGIDAEV 107 (158)
Q Consensus 76 g~~~~ii~~G~~~~~a~ea~~~L~~~gi~~~v 107 (158)
+..+++++.+.....+..++..|++.|+++.+
T Consensus 64 ~~~vvvyc~~g~~~~s~~~a~~l~~~G~~v~~ 95 (110)
T cd01521 64 EKLFVVYCDGPGCNGATKAALKLAELGFPVKE 95 (110)
T ss_pred CCeEEEEECCCCCchHHHHHHHHHHcCCeEEE
Confidence 45677776554333455677788888876443
No 280
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=36.36 E-value=75 Score=19.53 Aligned_cols=31 Identities=19% Similarity=0.330 Sum_probs=21.8
Q ss_pred EEEEEechhHHHHHHHHHHHHhCCCcEEEEEecc
Q psy7291 79 ITIVGHSKAVETALDAAKILAGQGIDAEVINLRS 112 (158)
Q Consensus 79 ~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~ 112 (158)
++||+-|... +|.+..|.+.|.+++++...-
T Consensus 2 vvViGgG~ig---~E~A~~l~~~g~~vtli~~~~ 32 (80)
T PF00070_consen 2 VVVIGGGFIG---IELAEALAELGKEVTLIERSD 32 (80)
T ss_dssp EEEESSSHHH---HHHHHHHHHTTSEEEEEESSS
T ss_pred EEEECcCHHH---HHHHHHHHHhCcEEEEEeccc
Confidence 6778777654 455666777789999986543
No 281
>PF01750 HycI: Hydrogenase maturation protease; InterPro: IPR000671 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. Metalloproteases are the most diverse of the four main types of protease, with more than 30 families identified to date []. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as abXHEbbHbc, where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. The large subunit of [NiFe]-hydrogenase, as well as other nickel metalloenzymes, is synthesized as a precursor devoid of the metalloenzyme active site. This precursor undergoes a complex post-translational maturation process that requires a number of accessory proteins [, , ]. At one step of this process, after nickel incorporation, each hydrogenase isoenzyme is processed by proteolytic cleavage at the C-terminal end by the corresponding hydrogenase maturation endopeptidase []. For example, Escherichia coli HycI is involved in processing of pre-HycE (the large subunit of hydrogenase 3) [, ]; HybD is involved in processing of pre-HybC (the large subunit of hydrogenase 2) []; and HyaD is assumed to be involved in processing of the large subunit of hydrogenase 1. This group represents metallopeptidases of the MEROPS peptidase family A31 (HybD endopeptidase family, clan AE). The cleavage site is after a His or an Arg, liberating a short peptide [, ]. This cleavage occurs only in the presence of nickel, and the endopeptidase probably uses the metal in the large subunit of [NiFe]-hydrogenases as a recognition motif []. There is no direct evidence for the active site or substrate-binding site, but there are predictions based on an available structure []. Nomenclature note: the following names are used in different organisms for members of this group: HycI, HybD, HyaD, HoxM, HoxW, HupD, HynC, HupM, VhoD, VhtD []. Gene/protein names are sometimes used interchangeably to designate various "hydrogenase cluster" proteins unrelated to each other in various organisms. For example, the following names are used for members of this group, but also for unrelated proteins: HupD is used in Azotobacter chroococcum and Anabaena species to designate an unrelated hydrogenase maturation factor; HydD is used to designate hydrogenase structural genes in Thermococcus litoralis, Pyrococcus abyssi, and other species.; GO: 0008047 enzyme activator activity, 0008233 peptidase activity; PDB: 1CFZ_E 2E85_B 2I8L_A 2KML_A.
Probab=36.14 E-value=76 Score=21.70 Aligned_cols=42 Identities=19% Similarity=0.090 Sum_probs=28.3
Q ss_pred HHHHHHHhCC---CcEEEEEeccccCCCHHHHHHHHhCCCeEEEEeCCc
Q psy7291 93 DAAKILAGQG---IDAEVINLRSLRPLDIETITKSVMKTNYLISVEGGW 138 (158)
Q Consensus 93 ea~~~L~~~g---i~~~vi~~~~l~Pld~~~l~~~~~~~~~vvvvEe~~ 138 (158)
++++.|+++. -++.+++.-+ .++ .+...++.++++++|+--.
T Consensus 2 ~v~~~L~~~~~~~~~v~vid~gt-~g~---~ll~~l~~~d~vIiVDAv~ 46 (130)
T PF01750_consen 2 HVAERLKERYSPPDNVEVIDGGT-DGL---DLLDLLEGYDRVIIVDAVD 46 (130)
T ss_dssp HHHHHHHHCEE--TTEEEEEETT-TCG---GGHHHHSS-SEEEEEEE--
T ss_pred HHHHHHHhhCCCCCCEEEEECCC-CHH---HHHHHHhCCCEEEEEEcCC
Confidence 4567777753 2589999988 344 3567778899999999655
No 282
>PF05908 DUF867: Protein of unknown function (DUF867); InterPro: IPR008585 This family consists of a number of bacterial and phage proteins with no known function and which are found in Bacillus species and the Lambda-like viruses.; PDB: 3A9L_A.
Probab=36.08 E-value=55 Score=24.75 Aligned_cols=45 Identities=16% Similarity=0.221 Sum_probs=27.4
Q ss_pred cCCCHHHHHHHHhCCCeEEEEe------CCcCCCCh----HHHHHHHHHcCCCCC
Q psy7291 114 RPLDIETITKSVMKTNYLISVE------GGWPQCGI----GSEISARIMEIPYSA 158 (158)
Q Consensus 114 ~Pld~~~l~~~~~~~~~vvvvE------e~~~~GG~----g~~i~~~l~~~~~~~ 158 (158)
.-||+..+.++++++..+|.+- ++...||. ...|...|.+.|+++
T Consensus 77 t~fDeP~a~~l~~~~~~~vsiHG~~~~~~~v~vGG~d~~l~~~i~~~L~~~Gf~v 131 (194)
T PF05908_consen 77 TNFDEPRALELVKKSDYVVSIHGYKGDEETVYVGGRDRELREAIAEALEKAGFTV 131 (194)
T ss_dssp GG---HHHHHHHHT-SEEEEEEEE--SS--EEEESS-HHHHHHHHHHHHHTT---
T ss_pred cccCcHHHHHHHhcCCEEEEEECCCCCCCEEEECCCCHHHHHHHHHHHHHcCCce
Confidence 3478888899999998888883 45667885 456777777777653
No 283
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=35.99 E-value=2.7e+02 Score=24.12 Aligned_cols=28 Identities=25% Similarity=0.335 Sum_probs=20.2
Q ss_pred CCHHHHHHHHHHHHh----C-CCcEEEEecccc
Q psy7291 5 YNSEDAKGLLKAAIR----D-PDPVVFLENELL 32 (158)
Q Consensus 5 ~d~~e~~~~l~~a~~----~-~~P~~iR~~~~~ 32 (158)
.++.++..+++.|++ . .+||+|-.|.-.
T Consensus 137 ~~~~~~~~~~~~A~~~A~~~~~GPV~l~iP~dl 169 (557)
T PRK08199 137 DDAARIPELVSRAFHVATSGRPGPVVLALPEDV 169 (557)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHhH
Confidence 467777778877775 2 589999876433
No 284
>PRK07586 hypothetical protein; Validated
Probab=35.96 E-value=2.8e+02 Score=23.72 Aligned_cols=60 Identities=18% Similarity=0.141 Sum_probs=32.6
Q ss_pred CCcEEEEEechhHHHHHHHHHHHHh-CCCcEEE--EE-----ecccc-----CCCHHHHHHHHhCCCeEEEEe
Q psy7291 76 GKDITIVGHSKAVETALDAAKILAG-QGIDAEV--IN-----LRSLR-----PLDIETITKSVMKTNYLISVE 135 (158)
Q Consensus 76 g~~~~ii~~G~~~~~a~ea~~~L~~-~gi~~~v--i~-----~~~l~-----Pld~~~l~~~~~~~~~vvvvE 135 (158)
.+-++|++.|.....+.+.+.+|.+ .|+.+-. +. -+-+- |.-.....+.++..+.|+++-
T Consensus 198 ~rPvi~~G~g~~~~~a~~~l~~lae~l~~pV~t~~~~~~~~~gkg~~~~~~~~~~~~~~~~~~~~aDlvl~vG 270 (514)
T PRK07586 198 EPTVLLLGGRALRERGLAAAARIAAATGARLLAETFPARMERGAGRPAVERLPYFAEQALAQLAGVRHLVLVG 270 (514)
T ss_pred CCCEEEeCCcccchhHHHHHHHHHHHHCCCEEecccccccccCCCCCCcccccchHHHHHHHHhcCCEEEEEC
Confidence 4568888888765666666666654 3555421 10 11111 111223455677778888775
No 285
>PRK08249 cystathionine gamma-synthase; Provisional
Probab=35.88 E-value=2.5e+02 Score=23.36 Aligned_cols=41 Identities=22% Similarity=0.184 Sum_probs=22.6
Q ss_pred CCCHHHHHHHHhCCCeEEEEeC-CcCCCChH--HHHHHHHHcCC
Q psy7291 115 PLDIETITKSVMKTNYLISVEG-GWPQCGIG--SEISARIMEIP 155 (158)
Q Consensus 115 Pld~~~l~~~~~~~~~vvvvEe-~~~~GG~g--~~i~~~l~~~~ 155 (158)
..|.+.+.+.++...++|.+|. +++.|-.- ..|++...++|
T Consensus 136 ~~d~e~l~~~i~~~tklV~ie~p~NPtg~v~dl~~I~~la~~~g 179 (398)
T PRK08249 136 TGDHEQIEAEIAKGCDLLYLETPTNPTLKIVDIERLAAAAKKVG 179 (398)
T ss_pred CCCHHHHHHhcCCCCeEEEEECCCCCCCccCCHHHHHHHHHHcC
Confidence 3566667666655446777764 33444332 45666655554
No 286
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins contain a VWA domain. The p44 subunit of TFIIH functions as a DNA helicase in RNA polymerase II transcription initiation and DNA repair, and its transcriptional activity is dependent on its C-terminal Zn-binding domains. The function of the vWA domain is unclear, but may be involved in complex assembly. The MIDAS motif is not conserved in this sub-group.
Probab=35.78 E-value=1.4e+02 Score=21.76 Aligned_cols=56 Identities=16% Similarity=0.217 Sum_probs=35.3
Q ss_pred CcEEEEEec-hhH--HHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhCCC-eEEEEeC
Q psy7291 77 KDITIVGHS-KAV--ETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKTN-YLISVEG 136 (158)
Q Consensus 77 ~~~~ii~~G-~~~--~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~~-~vvvvEe 136 (158)
++++|+.++ ... ....++++.++++|+.+.+|-+.. +.+.|+++++.++ +.+.+++
T Consensus 108 ~~iiil~sd~~~~~~~~~~~~~~~l~~~~I~v~~IgiG~----~~~~L~~ia~~tgG~~~~~~~ 167 (183)
T cd01453 108 REVLIIFSSLSTCDPGNIYETIDKLKKENIRVSVIGLSA----EMHICKEICKATNGTYKVILD 167 (183)
T ss_pred eEEEEEEcCCCcCChhhHHHHHHHHHHcCcEEEEEEech----HHHHHHHHHHHhCCeeEeeCC
Confidence 346666544 322 134467788888899988888863 3356777777553 5665554
No 287
>PRK08064 cystathionine beta-lyase; Provisional
Probab=35.30 E-value=2.6e+02 Score=23.10 Aligned_cols=50 Identities=16% Similarity=0.276 Sum_probs=24.5
Q ss_pred CCCcEEEEEeccccCCCHHHHHHHHhCCCeEEEEeC-CcCCCChH--HHHHHHHHcCC
Q psy7291 101 QGIDAEVINLRSLRPLDIETITKSVMKTNYLISVEG-GWPQCGIG--SEISARIMEIP 155 (158)
Q Consensus 101 ~gi~~~vi~~~~l~Pld~~~l~~~~~~~~~vvvvEe-~~~~GG~g--~~i~~~l~~~~ 155 (158)
.|+.+..+++ .|.+.+.+.++..-+++++|. +.+.|-.- ..|.+...+.|
T Consensus 116 ~G~~v~~v~~-----~d~~~l~~~l~~~tklV~l~~p~NptG~~~dl~~I~~la~~~g 168 (390)
T PRK08064 116 FGIEHTFVDM-----TNLEEVAQNIKPNTKLFYVETPSNPLLKVTDIRGVVKLAKAIG 168 (390)
T ss_pred cCCEEEEECC-----CCHHHHHHhcCCCceEEEEECCCCCCcEeccHHHHHHHHHHcC
Confidence 3555554443 144556665554445666664 23344332 35555555444
No 288
>PRK10329 glutaredoxin-like protein; Provisional
Probab=35.29 E-value=1.2e+02 Score=19.13 Aligned_cols=61 Identities=13% Similarity=0.063 Sum_probs=38.4
Q ss_pred hhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHh-C--CCeEEEEeCCcCCCChH-HHHHHHH
Q psy7291 86 KAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVM-K--TNYLISVEGGWPQCGIG-SEISARI 151 (158)
Q Consensus 86 ~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~-~--~~~vvvvEe~~~~GG~g-~~i~~~l 151 (158)
+.+..+..+.+.|.++|+....+++.. +.+...++.. + .-.++++.+.. .+||. ..+.+..
T Consensus 9 ~~Cp~C~~ak~~L~~~gI~~~~idi~~----~~~~~~~~~~~g~~~vPvv~i~~~~-~~Gf~~~~l~~~~ 73 (81)
T PRK10329 9 NDCVQCHATKRAMESRGFDFEMINVDR----VPEAAETLRAQGFRQLPVVIAGDLS-WSGFRPDMINRLH 73 (81)
T ss_pred CCCHhHHHHHHHHHHCCCceEEEECCC----CHHHHHHHHHcCCCCcCEEEECCEE-EecCCHHHHHHHH
Confidence 556788888888999999999999875 3333222221 2 22466676644 56775 4454443
No 289
>PRK05568 flavodoxin; Provisional
Probab=35.25 E-value=1.4e+02 Score=20.40 Aligned_cols=33 Identities=9% Similarity=0.044 Sum_probs=18.8
Q ss_pred EEEEechhHHHHHH----HHHHHHhCCCcEEEEEecc
Q psy7291 80 TIVGHSKAVETALD----AAKILAGQGIDAEVINLRS 112 (158)
Q Consensus 80 ~ii~~G~~~~~a~e----a~~~L~~~gi~~~vi~~~~ 112 (158)
++|-|+|+...... .++.+++.|..+.++++..
T Consensus 4 ~~IvY~S~~GnT~~~a~~i~~~~~~~g~~v~~~~~~~ 40 (142)
T PRK05568 4 INIIYWSGTGNTEAMANLIAEGAKENGAEVKLLNVSE 40 (142)
T ss_pred EEEEEECCCchHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 34445554444433 3445556678888877665
No 290
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=35.20 E-value=2e+02 Score=24.23 Aligned_cols=34 Identities=24% Similarity=0.496 Sum_probs=26.5
Q ss_pred CCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEecc
Q psy7291 76 GKDITIVGHSKAVETALDAAKILAGQGIDAEVINLRS 112 (158)
Q Consensus 76 g~~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~ 112 (158)
|+.++||+.|.. +++++..|...|.+++++..+.
T Consensus 272 gk~VvVIGgG~~---a~d~A~~l~~~G~~Vtlv~~~~ 305 (449)
T TIGR01316 272 GKSVVVIGGGNT---AVDSARTALRLGAEVHCLYRRT 305 (449)
T ss_pred CCeEEEECCCHH---HHHHHHHHHHcCCEEEEEeecC
Confidence 678999998854 5566777777798999998764
No 291
>PF08859 DGC: DGC domain; InterPro: IPR014958 This protein appears to be a zinc binding domain from the conservation of four potential chelating cysteines. The protein is named after a conserved central motif, the function is unknown.
Probab=35.15 E-value=1.4e+02 Score=20.14 Aligned_cols=49 Identities=24% Similarity=0.258 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhCCCeEEEEeCCc
Q psy7291 88 VETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKTNYLISVEGGW 138 (158)
Q Consensus 88 ~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~~~vvvvEe~~ 138 (158)
...+.+|+.+|.+++. ...+.+.-+.= +.+.+.+.+++.+++++++-..
T Consensus 13 Gqla~~aA~~l~~~~~-~~~~Cla~v~~-~~~~~~~~a~~~~~iIaIDGC~ 61 (110)
T PF08859_consen 13 GQLANQAAVELTREGP-GEMSCLAGVGA-GVEGLVKSARSARPIIAIDGCP 61 (110)
T ss_pred hHHHHHHHHHHHHcCC-eeEEechhhhc-CcHHHHHHHhcCCceEEECCCH
Confidence 3455667778887775 45554444333 3345778888888999998544
No 292
>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated
Probab=35.12 E-value=2.6e+02 Score=23.06 Aligned_cols=40 Identities=15% Similarity=0.152 Sum_probs=20.5
Q ss_pred CCHHHHHHHHhCCCeEEEEeCCc-CCCChH--HHHHHHHHcCC
Q psy7291 116 LDIETITKSVMKTNYLISVEGGW-PQCGIG--SEISARIMEIP 155 (158)
Q Consensus 116 ld~~~l~~~~~~~~~vvvvEe~~-~~GG~g--~~i~~~l~~~~ 155 (158)
.|.+.+.+.++..-++|++|.-. +.|-.- ..|++...++|
T Consensus 122 ~d~e~l~~ai~~~t~lV~lesP~Nptg~~~di~~I~~la~~~g 164 (380)
T PRK06176 122 SDLSQIKKAIKPNTKALYLETPSNPLLKITDLAQCASVAKDHG 164 (380)
T ss_pred CCHHHHHHhcCcCceEEEEECCCCCCceecCHHHHHHHHHHcC
Confidence 35556666665444566666422 333332 35555555554
No 293
>TIGR01752 flav_long flavodoxin, long chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the long chain type, typical for nitrogen fixation but associated with pyruvate formate-lyase activation and cobalamin-dependent methionine synthase activity in E. coli.
Probab=35.07 E-value=1.7e+02 Score=20.96 Aligned_cols=31 Identities=13% Similarity=0.069 Sum_probs=17.1
Q ss_pred EEEechhHHHHHHHHHHHHhC--CCcEEEEEec
Q psy7291 81 IVGHSKAVETALDAAKILAGQ--GIDAEVINLR 111 (158)
Q Consensus 81 ii~~G~~~~~a~ea~~~L~~~--gi~~~vi~~~ 111 (158)
+|-|||+.....++++.+.+. +..+.++++.
T Consensus 3 ~IiY~S~tGnTe~vA~~Ia~~l~~~~~~i~~~~ 35 (167)
T TIGR01752 3 GIFYGTDTGNTEGIAEKIQKELGEDDVDVFNIA 35 (167)
T ss_pred EEEEECCCChHHHHHHHHHHHhCCCceEEEEcc
Confidence 455677776666666655432 1235555544
No 294
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=35.05 E-value=69 Score=25.01 Aligned_cols=32 Identities=44% Similarity=0.538 Sum_probs=22.1
Q ss_pred cEEEEEechhHHHHHHHHHHHHhCCCcEEEEEecc
Q psy7291 78 DITIVGHSKAVETALDAAKILAGQGIDAEVINLRS 112 (158)
Q Consensus 78 ~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~ 112 (158)
|++||+-|..... ++-.|.+.|+++.|+.-..
T Consensus 3 dV~IvGaG~aGl~---~A~~L~~~G~~v~i~E~~~ 34 (356)
T PF01494_consen 3 DVAIVGAGPAGLA---AALALARAGIDVTIIERRP 34 (356)
T ss_dssp EEEEE--SHHHHH---HHHHHHHTTCEEEEEESSS
T ss_pred eEEEECCCHHHHH---HHHHHHhcccccccchhcc
Confidence 6899988865443 3456888899999997653
No 295
>PF13399 LytR_C: LytR cell envelope-related transcriptional attenuator
Probab=34.71 E-value=60 Score=20.61 Aligned_cols=27 Identities=11% Similarity=0.267 Sum_probs=22.2
Q ss_pred EEEEeCCcCCCChHHHHHHHHHcCCCC
Q psy7291 131 LISVEGGWPQCGIGSEISARIMEIPYS 157 (158)
Q Consensus 131 vvvvEe~~~~GG~g~~i~~~l~~~~~~ 157 (158)
-|.|-++....|+++.++..|...|++
T Consensus 5 ~V~VlNgt~~~GlA~~~a~~L~~~Gf~ 31 (90)
T PF13399_consen 5 RVEVLNGTGVSGLAARVADALRNRGFT 31 (90)
T ss_pred EEEEEECcCCcCHHHHHHHHHHHCCCc
Confidence 456677777889999999999998874
No 296
>COG2820 Udp Uridine phosphorylase [Nucleotide transport and metabolism]
Probab=34.39 E-value=1.1e+02 Score=24.06 Aligned_cols=40 Identities=25% Similarity=0.270 Sum_probs=29.6
Q ss_pred CCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCC
Q psy7291 76 GKDITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPL 116 (158)
Q Consensus 76 g~~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pl 116 (158)
|..+++.|+|....-+--|+++|..-|.++ +|.+-+---+
T Consensus 57 g~~v~v~StGIGgPSaaIAvEEL~~lGa~t-fiRVGT~Gal 96 (248)
T COG2820 57 GKPVTVCSTGIGGPSAAIAVEELARLGAKT-FIRVGTTGAL 96 (248)
T ss_pred CeEEEEEecCCCCchHHHHHHHHHhcCCeE-EEEeeccccc
Confidence 788999999987777777889998878653 3555554433
No 297
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=34.34 E-value=1e+02 Score=22.71 Aligned_cols=31 Identities=23% Similarity=0.237 Sum_probs=23.3
Q ss_pred cEEEEEechh-HHHHHHHHHHHHhCCCcEEEE
Q psy7291 78 DITIVGHSKA-VETALDAAKILAGQGIDAEVI 108 (158)
Q Consensus 78 ~~~ii~~G~~-~~~a~ea~~~L~~~gi~~~vi 108 (158)
++++.-+|+. +..+.+.++.|++.|.++.++
T Consensus 2 ~I~lgvtGs~~a~~~~~ll~~L~~~g~~V~vi 33 (177)
T TIGR02113 2 KILLAVTGSIAAYKAADLTSQLTKLGYDVTVL 33 (177)
T ss_pred EEEEEEcCHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 4667777764 456778888998888888877
No 298
>cd03414 CbiX_SirB_C Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), C-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both CbiX and SirB are found in a wide range of bacteria.
Probab=34.21 E-value=1.4e+02 Score=19.76 Aligned_cols=73 Identities=12% Similarity=0.076 Sum_probs=39.6
Q ss_pred EEEEEechhHHHHHHHHH----HHHhCC--CcEEEEEeccccCCCHHHHHHHHh-CCCeEEEEeCCcCCCChHHHHHHHH
Q psy7291 79 ITIVGHSKAVETALDAAK----ILAGQG--IDAEVINLRSLRPLDIETITKSVM-KTNYLISVEGGWPQCGIGSEISARI 151 (158)
Q Consensus 79 ~~ii~~G~~~~~a~ea~~----~L~~~g--i~~~vi~~~~l~Pld~~~l~~~~~-~~~~vvvvEe~~~~GG~g~~i~~~l 151 (158)
++|++.||.-..+.+.++ .++++. ..+.+--+..-.|--.+.+.++.+ +++.|+++==....|+.-..|...+
T Consensus 3 ~llv~HGS~~~~~~~~~~~l~~~l~~~~~~~~v~~afle~~~P~~~~~l~~l~~~g~~~i~vvP~fL~~G~h~~~i~~~~ 82 (117)
T cd03414 3 VVLVGRGSSDPDANADVAKIARLLEEGTGFARVETAFAAATRPSLPEALERLRALGARRVVVLPYLLFTGVLMDRIEEQV 82 (117)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEEecCCCCCHHHHHHHHHHcCCCEEEEEechhcCCchHHHHHHHH
Confidence 677888876444444333 343332 223333333335666666766654 5678888765555566555554443
No 299
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=34.17 E-value=1.8e+02 Score=23.18 Aligned_cols=35 Identities=20% Similarity=0.362 Sum_probs=25.2
Q ss_pred cCCCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEe
Q psy7291 74 VTGKDITIVGHSKAVETALDAAKILAGQGIDAEVINL 110 (158)
Q Consensus 74 ~~g~~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~ 110 (158)
..|++++||+.|..+...+ +..|.++|..+++.+-
T Consensus 157 l~Gk~vvViG~gg~vGkpi--a~~L~~~gatVtv~~~ 191 (283)
T PRK14192 157 LAGKHAVVVGRSAILGKPM--AMMLLNANATVTICHS 191 (283)
T ss_pred CCCCEEEEECCcHHHHHHH--HHHHHhCCCEEEEEeC
Confidence 3588999999998766654 3455666777777765
No 300
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=34.15 E-value=1.3e+02 Score=24.23 Aligned_cols=57 Identities=14% Similarity=0.207 Sum_probs=36.1
Q ss_pred ccCCCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccC----CCHHHHHHHHhCCCeEEE
Q psy7291 73 RVTGKDITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRP----LDIETITKSVMKTNYLIS 133 (158)
Q Consensus 73 ~~~g~~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~P----ld~~~l~~~~~~~~~vvv 133 (158)
...|+.+.||++|.+...+ ++.++.-|.++-.++... ++ +....+.++++..+.|++
T Consensus 142 ~L~gktvGIiG~G~IG~~v---A~~~~~fgm~V~~~d~~~-~~~~~~~~~~~l~ell~~sDvv~l 202 (311)
T PRK08410 142 EIKGKKWGIIGLGTIGKRV---AKIAQAFGAKVVYYSTSG-KNKNEEYERVSLEELLKTSDIISI 202 (311)
T ss_pred ccCCCEEEEECCCHHHHHH---HHHHhhcCCEEEEECCCc-cccccCceeecHHHHhhcCCEEEE
Confidence 3558899999999987764 445555577766666431 11 222357788877764444
No 301
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=34.14 E-value=84 Score=23.47 Aligned_cols=37 Identities=22% Similarity=0.322 Sum_probs=28.2
Q ss_pred CCcEEEEEechhHHHHHHHHHHHHhCCC-cEEEEEeccccC
Q psy7291 76 GKDITIVGHSKAVETALDAAKILAGQGI-DAEVINLRSLRP 115 (158)
Q Consensus 76 g~~~~ii~~G~~~~~a~ea~~~L~~~gi-~~~vi~~~~l~P 115 (158)
+..++|++.|.....+ ++.|...|+ ++.++|...+.+
T Consensus 21 ~~~VlviG~GglGs~i---a~~La~~Gv~~i~lvD~d~ve~ 58 (202)
T TIGR02356 21 NSHVLIIGAGGLGSPA---ALYLAGAGVGTIVIVDDDHVDL 58 (202)
T ss_pred CCCEEEECCCHHHHHH---HHHHHHcCCCeEEEecCCEEcc
Confidence 5789999999887765 455666687 689998876544
No 302
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=33.82 E-value=51 Score=25.47 Aligned_cols=44 Identities=16% Similarity=0.387 Sum_probs=34.2
Q ss_pred CCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhCC
Q psy7291 76 GKDITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKT 128 (158)
Q Consensus 76 g~~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~ 128 (158)
..|+.+||.-+-...+.+|++ .+++|-- ||||..+-+.+.+.++
T Consensus 74 ~~DVI~iTAA~d~~tI~~alr--------~Gv~DYL-iKPf~~eRl~~aL~~y 117 (224)
T COG4565 74 PVDVIVITAASDMETIKEALR--------YGVVDYL-IKPFTFERLQQALTRY 117 (224)
T ss_pred CCCEEEEeccchHHHHHHHHh--------cCchhhe-ecceeHHHHHHHHHHH
Confidence 579999999999888888765 4566654 7999998877766543
No 303
>PRK00037 hisS histidyl-tRNA synthetase; Reviewed
Probab=33.80 E-value=1.9e+02 Score=23.92 Aligned_cols=58 Identities=21% Similarity=0.259 Sum_probs=37.2
Q ss_pred CCcEEEEEech-hHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHH-hCCCeEEEEeC
Q psy7291 76 GKDITIVGHSK-AVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSV-MKTNYLISVEG 136 (158)
Q Consensus 76 g~~~~ii~~G~-~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~-~~~~~vvvvEe 136 (158)
..+++|+..|. ....+.+.++.|+++|+.+.+ +... ..+ .+.+...- .+...++++.+
T Consensus 318 ~~~vlI~~~~~~~~~~a~~i~~~Lr~~Gi~v~i-~~~~-~~~-~~~~~~a~~~gi~~~viig~ 377 (412)
T PRK00037 318 PVDVYVVPLGEDAELAALKLAEKLRAAGIRVEL-DYGG-RKL-KKQFKYADKSGARFVLILGE 377 (412)
T ss_pred CCCEEEEEeChHHHHHHHHHHHHHHHCCCeEEE-eCCC-CCH-HHHHHHHHHcCCCEEEEECh
Confidence 35888888775 346688889999999998876 3332 234 33343333 24566777764
No 304
>TIGR01678 FAD_lactone_ox sugar 1,4-lactone oxidases. This model represents a family of at least two different sugar 1,4 lactone oxidases, both involved in synthesizing ascorbic acid or a derivative. These include L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae. Members are proposed to have the cofactor FAD covalently bound at a site specified by Prosite motif PS00862; OX2_COVAL_FAD; 1.
Probab=33.78 E-value=50 Score=28.03 Aligned_cols=27 Identities=19% Similarity=0.252 Sum_probs=24.3
Q ss_pred CcccCCHHHHHHHHHHHHhCCCcEEEE
Q psy7291 1 VVSPYNSEDAKGLLKAAIRDPDPVVFL 27 (158)
Q Consensus 1 V~~P~d~~e~~~~l~~a~~~~~P~~iR 27 (158)
|+.|.+.+|+.++++.|.+.+.|+.+|
T Consensus 18 v~~P~s~eev~~iv~~A~~~~~~v~v~ 44 (438)
T TIGR01678 18 YYQPTSVEEVREVLALAREQKKKVKVV 44 (438)
T ss_pred EEecCCHHHHHHHHHHHHHCCCeEEEE
Confidence 578999999999999999888898887
No 305
>TIGR01251 ribP_PPkin ribose-phosphate pyrophosphokinase. In some systems, close homologs lacking enzymatic activity exist and perform regulatory functions. The model is designated subfamily rather than equivalog for this reason.
Probab=33.75 E-value=1.4e+02 Score=23.97 Aligned_cols=58 Identities=19% Similarity=0.208 Sum_probs=34.9
Q ss_pred CCcEEE----EEechhHHHHHHHHHHHHhCCCcEEEEEeccccC-CCHHHHHHHHhC-CCeEEEEeCCc
Q psy7291 76 GKDITI----VGHSKAVETALDAAKILAGQGIDAEVINLRSLRP-LDIETITKSVMK-TNYLISVEGGW 138 (158)
Q Consensus 76 g~~~~i----i~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~P-ld~~~l~~~~~~-~~~vvvvEe~~ 138 (158)
|++++| +++|.+. .++++.|++.|.+ -+.+....+ |..+.+..+.+. .+.|++.+-+.
T Consensus 210 g~~vliVDDii~tG~Tl---~~a~~~l~~~ga~--~v~~~~th~v~~~~a~~~l~~~~~~~iv~tdt~~ 273 (308)
T TIGR01251 210 GKDVVIVDDIIDTGGTI---AKAAEILKSAGAK--RVIAAATHGVFSGPAIERIANAGVEEVIVTNTIP 273 (308)
T ss_pred CCEEEEEccccCCHHHH---HHHHHHHHhcCCC--EEEEEEEeeecCcHHHHHHHhCCCCEEEEeCCCC
Confidence 566665 5677654 4456666666643 222333344 455666666654 78999999874
No 306
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=33.60 E-value=1.5e+02 Score=19.94 Aligned_cols=32 Identities=9% Similarity=0.175 Sum_probs=18.2
Q ss_pred EEechhHHHHHHHH----HHHHhCCCcEEEEEeccc
Q psy7291 82 VGHSKAVETALDAA----KILAGQGIDAEVINLRSL 113 (158)
Q Consensus 82 i~~G~~~~~a~ea~----~~L~~~gi~~~vi~~~~l 113 (158)
|-|||+.....+.+ +.+.+.|.++.++++...
T Consensus 3 Iiy~S~tGnT~~~A~~i~~~~~~~g~~v~~~~~~~~ 38 (140)
T TIGR01753 3 IVYASMTGNTEEMANIIAEGLKEAGAEVDLLEVADA 38 (140)
T ss_pred EEEECCCcHHHHHHHHHHHHHHhcCCeEEEEEcccC
Confidence 44555555444444 445556777777776543
No 307
>PRK08574 cystathionine gamma-synthase; Provisional
Probab=33.39 E-value=2.5e+02 Score=23.17 Aligned_cols=39 Identities=18% Similarity=0.249 Sum_probs=18.0
Q ss_pred CHHHHHHHHhC-CCeEEEEeC-CcCCCChH--HHHHHHHHcCC
Q psy7291 117 DIETITKSVMK-TNYLISVEG-GWPQCGIG--SEISARIMEIP 155 (158)
Q Consensus 117 d~~~l~~~~~~-~~~vvvvEe-~~~~GG~g--~~i~~~l~~~~ 155 (158)
|.+.+.+.+.. ..+++++|. +++.|..- +.|++...++|
T Consensus 125 d~~~l~~~i~~~~tklV~ie~p~NPtG~v~dl~~I~~la~~~g 167 (385)
T PRK08574 125 STEDIIEAIKEGRTKLVFIETMTNPTLKVIDVPEVAKAAKELG 167 (385)
T ss_pred CHHHHHHhcCccCceEEEEECCCCCCCEecCHHHHHHHHHHcC
Confidence 34455555554 334555654 23333321 34555554444
No 308
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=33.37 E-value=72 Score=24.29 Aligned_cols=32 Identities=31% Similarity=0.454 Sum_probs=22.8
Q ss_pred cEEEEEechhHHHHHHHHHHHHhCCCcEEEEEecc
Q psy7291 78 DITIVGHSKAVETALDAAKILAGQGIDAEVINLRS 112 (158)
Q Consensus 78 ~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~ 112 (158)
|++||+-|...-.+ +-.|.+.|+++.|++-..
T Consensus 2 dv~IiGaG~aGl~~---A~~l~~~g~~v~vie~~~ 33 (295)
T TIGR02032 2 DVVVVGAGPAGASA---AYRLADKGLRVLLLEKKS 33 (295)
T ss_pred CEEEECCCHHHHHH---HHHHHHCCCeEEEEeccC
Confidence 68999888654432 334667799999997663
No 309
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=33.21 E-value=1.3e+02 Score=21.93 Aligned_cols=49 Identities=20% Similarity=0.462 Sum_probs=31.0
Q ss_pred CCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhCCCeEE
Q psy7291 76 GKDITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKTNYLI 132 (158)
Q Consensus 76 g~~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~~~vv 132 (158)
|++++||+-+..+..-+ +..|.++|..+++.+-.+ +.+.+.++..+-|+
T Consensus 36 Gk~v~VvGrs~~VG~Pl--a~lL~~~~atVt~~h~~T------~~l~~~~~~ADIVV 84 (160)
T PF02882_consen 36 GKKVVVVGRSNIVGKPL--AMLLLNKGATVTICHSKT------KNLQEITRRADIVV 84 (160)
T ss_dssp T-EEEEE-TTTTTHHHH--HHHHHHTT-EEEEE-TTS------SSHHHHHTTSSEEE
T ss_pred CCEEEEECCcCCCChHH--HHHHHhCCCeEEeccCCC------CcccceeeeccEEe
Confidence 88999999998877765 346777787777777666 33556666665333
No 310
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=33.19 E-value=2.4e+02 Score=22.17 Aligned_cols=12 Identities=8% Similarity=0.127 Sum_probs=8.2
Q ss_pred CcEEEEEechhH
Q psy7291 77 KDITIVGHSKAV 88 (158)
Q Consensus 77 ~~~~ii~~G~~~ 88 (158)
.+++++|+|+..
T Consensus 55 ~~Vtvvs~Gp~~ 66 (256)
T PRK03359 55 AQVTALSVGGKA 66 (256)
T ss_pred CEEEEEEECCcc
Confidence 577777777654
No 311
>PRK13812 orotate phosphoribosyltransferase; Provisional
Probab=33.04 E-value=2e+02 Score=21.12 Aligned_cols=64 Identities=6% Similarity=-0.034 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHhCCCcEEEEEeccccCCC-HHHHHHHHhCCCeEEEEeCCcCCCChHHHHHHHHHcCCC
Q psy7291 89 ETALDAAKILAGQGIDAEVINLRSLRPLD-IETITKSVMKTNYLISVEGGWPQCGIGSEISARIMEIPY 156 (158)
Q Consensus 89 ~~a~ea~~~L~~~gi~~~vi~~~~l~Pld-~~~l~~~~~~~~~vvvvEe~~~~GG~g~~i~~~l~~~~~ 156 (158)
..|...+..| |+...++.... +-.. .+.+...+++.++|++||+-..+||--....+.+.+.|.
T Consensus 71 ~lA~~lA~~l---~~p~~~~rk~~-k~yg~~~~~~g~~~~g~~VlIVDDvitTG~Tl~~~~~~l~~~Ga 135 (176)
T PRK13812 71 PLVAVTSVET---GVPYVIARKQA-KEYGTGNRIEGRLDEGEEVVVLEDIATTGQSAVDAVEALREAGA 135 (176)
T ss_pred HHHHHHHHHH---CCCEEEEeccC-CcCCCCCeEEecCCCcCEEEEEEEeeCCCHHHHHHHHHHHHCCC
Confidence 3444445555 55655554432 1111 112223345678999999999999988888888888775
No 312
>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=32.73 E-value=1.6e+02 Score=23.86 Aligned_cols=49 Identities=22% Similarity=0.377 Sum_probs=37.6
Q ss_pred hhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhC-CCeEEEEeCCcC
Q psy7291 86 KAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMK-TNYLISVEGGWP 139 (158)
Q Consensus 86 ~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~-~~~vvvvEe~~~ 139 (158)
+.++.+.||.++. +.++++|.++- ||-.+.+.++++. -+.|+++-||.+
T Consensus 52 PVf~tV~EA~~~~---~a~~svI~Vp~--~~aadai~EAida~i~liv~ITEgIP 101 (293)
T COG0074 52 PVFNTVEEAVKET---GANASVIFVPP--PFAADAILEAIDAGIKLVVIITEGIP 101 (293)
T ss_pred cHHHHHHHHHHhh---CCCEEEEecCc--HHHHHHHHHHHhCCCcEEEEEeCCCC
Confidence 5677788887765 67888887663 6777788888876 678888888886
No 313
>cd01465 vWA_subgroup VWA subgroup: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if n
Probab=32.63 E-value=1.7e+02 Score=20.29 Aligned_cols=58 Identities=5% Similarity=0.046 Sum_probs=38.9
Q ss_pred CcEEEEEechh------HHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhC-CCeEEEEeC
Q psy7291 77 KDITIVGHSKA------VETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMK-TNYLISVEG 136 (158)
Q Consensus 77 ~~~~ii~~G~~------~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~-~~~vvvvEe 136 (158)
..++|+|=|.. ...+.++++.++.+++.+.+|.+. .+.+...++++++. ....+.+++
T Consensus 98 ~~ivl~TDG~~~~~~~~~~~~~~~~~~~~~~~v~i~~i~~g--~~~~~~~l~~ia~~~~g~~~~~~~ 162 (170)
T cd01465 98 NRILLATDGDFNVGETDPDELARLVAQKRESGITLSTLGFG--DNYNEDLMEAIADAGNGNTAYIDN 162 (170)
T ss_pred eEEEEEeCCCCCCCCCCHHHHHHHHHHhhcCCeEEEEEEeC--CCcCHHHHHHHHhcCCceEEEeCC
Confidence 34777777752 345556666677778887778777 67888888888764 345555554
No 314
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=32.36 E-value=1.3e+02 Score=26.05 Aligned_cols=58 Identities=17% Similarity=0.353 Sum_probs=35.9
Q ss_pred cCCCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccC-------CCHHHHHHHHhCCCeEEEE
Q psy7291 74 VTGKDITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRP-------LDIETITKSVMKTNYLISV 134 (158)
Q Consensus 74 ~~g~~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~P-------ld~~~l~~~~~~~~~vvvv 134 (158)
..|+.++|+++|.+... +++.|+..|.++.+++..-.+. +....+.++++..+.|++.
T Consensus 252 LaGKtVgVIG~G~IGr~---vA~rL~a~Ga~ViV~e~dp~~a~~A~~~G~~~~~leell~~ADIVI~a 316 (476)
T PTZ00075 252 IAGKTVVVCGYGDVGKG---CAQALRGFGARVVVTEIDPICALQAAMEGYQVVTLEDVVETADIFVTA 316 (476)
T ss_pred cCCCEEEEECCCHHHHH---HHHHHHHCCCEEEEEeCCchhHHHHHhcCceeccHHHHHhcCCEEEEC
Confidence 34889999999986554 4556666788877774432221 1111355667777666654
No 315
>PRK04930 glutathione-regulated potassium-efflux system ancillary protein KefG; Provisional
Probab=32.26 E-value=2.1e+02 Score=21.25 Aligned_cols=59 Identities=14% Similarity=0.025 Sum_probs=36.0
Q ss_pred HHHHHHHHHhCCCcEEEEEeccccC---CCHHHHHHHHhCCCeEEEEeCCcCCCChHHHHHHH
Q psy7291 91 ALDAAKILAGQGIDAEVINLRSLRP---LDIETITKSVMKTNYLISVEGGWPQCGIGSEISAR 150 (158)
Q Consensus 91 a~ea~~~L~~~gi~~~vi~~~~l~P---ld~~~l~~~~~~~~~vvvvEe~~~~GG~g~~i~~~ 150 (158)
+.+++.+..+++.++.+.|+....| +|.+.=.+.+..++.||+.=--+ ..|.-+.+..+
T Consensus 22 ~n~~l~~~~~~~~~v~~~DL~~~~p~~~~d~~~eq~~l~~aD~iV~~fPl~-w~~~Pa~LK~w 83 (184)
T PRK04930 22 ANRVLLKPAQQLEHVTVHDLYAHYPDFFIDIPHEQALLREHDVIVFQHPLY-TYSCPALLKEW 83 (184)
T ss_pred HHHHHHHHHHcCCceEEEECcccCCCCCCCHHHHHHHHHhCCEEEEEcCcc-ccCCcHHHHHH
Confidence 3344444445567899999988877 56665556677788777654333 34444444433
No 316
>cd06219 DHOD_e_trans_like1 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD,
Probab=32.20 E-value=1.2e+02 Score=23.08 Aligned_cols=34 Identities=21% Similarity=0.171 Sum_probs=26.2
Q ss_pred CCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEE
Q psy7291 76 GKDITIVGHSKAVETALDAAKILAGQGIDAEVIN 109 (158)
Q Consensus 76 g~~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~ 109 (158)
+.++++|+.|+.....+-.++.+.+.+.++.++.
T Consensus 97 ~~~~lliagG~GiaP~~~~l~~~~~~~~~v~l~~ 130 (248)
T cd06219 97 YGTVVFVGGGVGIAPIYPIAKALKEAGNRVITII 130 (248)
T ss_pred CCeEEEEeCcccHHHHHHHHHHHHHcCCeEEEEE
Confidence 4679999999988888877777766666676653
No 317
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=32.09 E-value=77 Score=24.99 Aligned_cols=25 Identities=24% Similarity=0.266 Sum_probs=14.4
Q ss_pred chhHHHHHHHHHHHHhCCCcEEEEE
Q psy7291 85 SKAVETALDAAKILAGQGIDAEVIN 109 (158)
Q Consensus 85 G~~~~~a~ea~~~L~~~gi~~~vi~ 109 (158)
|.+-..+.+.++.|.++|.++.++.
T Consensus 12 gG~~~~~~~la~~L~~~G~~v~v~~ 36 (371)
T cd04962 12 GGSGVVATELGKALARRGHEVHFIT 36 (371)
T ss_pred CCccchHHHHHHHHHhcCCceEEEe
Confidence 4444555555666666666666654
No 318
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=32.05 E-value=1.2e+02 Score=25.33 Aligned_cols=56 Identities=16% Similarity=0.213 Sum_probs=36.6
Q ss_pred cCCCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCC---CHHHHHHHHhCCCeEE
Q psy7291 74 VTGKDITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPL---DIETITKSVMKTNYLI 132 (158)
Q Consensus 74 ~~g~~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pl---d~~~l~~~~~~~~~vv 132 (158)
..|+.+.||++|.+...+ ++.|+.-|+++-++|...-.+- ....+.++++..+-|.
T Consensus 114 L~gktvGIIG~G~IG~~v---A~~l~a~G~~V~~~dp~~~~~~~~~~~~~L~ell~~sDiI~ 172 (378)
T PRK15438 114 LHDRTVGIVGVGNVGRRL---QARLEALGIKTLLCDPPRADRGDEGDFRSLDELVQEADILT 172 (378)
T ss_pred cCCCEEEEECcCHHHHHH---HHHHHHCCCEEEEECCcccccccccccCCHHHHHhhCCEEE
Confidence 347899999999998765 4456666888888875321111 1124778887766444
No 319
>COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=31.96 E-value=2.7e+02 Score=23.73 Aligned_cols=60 Identities=18% Similarity=0.153 Sum_probs=42.0
Q ss_pred CCcEEEEEechhH-HHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHh-CCCeEEEEeCCc
Q psy7291 76 GKDITIVGHSKAV-ETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVM-KTNYLISVEGGW 138 (158)
Q Consensus 76 g~~~~ii~~G~~~-~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~-~~~~vvvvEe~~ 138 (158)
..++.|++.|... ..+++.++.|++.|+++.+.-... .+ .+.++..-+ +.+.++++-+.-
T Consensus 335 ~~~v~v~~~~~~~~~~a~~la~~LR~~g~~~~~~~~~r--~~-k~q~k~A~~~g~~~~viiGe~E 396 (429)
T COG0124 335 RVDVYVVPLGEDAEPEALKLAQKLRAAGISVEVDYSGR--KL-KKQFKYADKLGARFAVILGEDE 396 (429)
T ss_pred CCCEEEEEcCchhHHHHHHHHHHHHHcCCcEEEEeccc--cH-HHHHHHHHHCCCCEEEEEcchH
Confidence 5789999999987 889999999999999887764433 23 233443333 456677776544
No 320
>PRK06460 hypothetical protein; Provisional
Probab=31.79 E-value=2.9e+02 Score=22.66 Aligned_cols=26 Identities=23% Similarity=0.127 Sum_probs=12.5
Q ss_pred eEEEEeC-CcCCCChH--HHHHHHHHcCC
Q psy7291 130 YLISVEG-GWPQCGIG--SEISARIMEIP 155 (158)
Q Consensus 130 ~vvvvEe-~~~~GG~g--~~i~~~l~~~~ 155 (158)
+++++|. +++.|-.- .+|++...++|
T Consensus 132 klV~l~sp~NPtG~v~d~~~I~~la~~~g 160 (376)
T PRK06460 132 DVVFVENITNPLLRVVDITELSKVCKENG 160 (376)
T ss_pred eEEEEECCCCCCCcccCHHHHHHHHHHcC
Confidence 4566655 44444432 34555544443
No 321
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=31.76 E-value=2.1e+02 Score=22.91 Aligned_cols=17 Identities=6% Similarity=0.110 Sum_probs=11.7
Q ss_pred CCChHHHHHHHHHcCCC
Q psy7291 140 QCGIGSEISARIMEIPY 156 (158)
Q Consensus 140 ~GG~g~~i~~~l~~~~~ 156 (158)
.|+++..+..++.+.|+
T Consensus 152 SG~l~~~~~~~a~~~gi 168 (286)
T TIGR01019 152 SGTLTYEAVHQLTKAGF 168 (286)
T ss_pred cHHHHHHHHHHHHHcCC
Confidence 35566777777777765
No 322
>PRK09267 flavodoxin FldA; Validated
Probab=31.74 E-value=1.9e+02 Score=20.54 Aligned_cols=20 Identities=15% Similarity=0.086 Sum_probs=12.0
Q ss_pred EEEEechhHHHHHHHHHHHH
Q psy7291 80 TIVGHSKAVETALDAAKILA 99 (158)
Q Consensus 80 ~ii~~G~~~~~a~ea~~~L~ 99 (158)
++|.|+|+.....++++.+.
T Consensus 4 i~IiY~S~tGnT~~vA~~Ia 23 (169)
T PRK09267 4 IGIFFGSDTGNTEDIAKMIQ 23 (169)
T ss_pred EEEEEECCCChHHHHHHHHH
Confidence 45666776666666555443
No 323
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=31.74 E-value=87 Score=26.40 Aligned_cols=32 Identities=28% Similarity=0.366 Sum_probs=25.0
Q ss_pred CCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEe
Q psy7291 76 GKDITIVGHSKAVETALDAAKILAGQGIDAEVINL 110 (158)
Q Consensus 76 g~~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~ 110 (158)
+.+++||+-|... +.++..|.+.|.++.|++-
T Consensus 133 ~~~V~IIG~G~aG---l~aA~~l~~~G~~V~vie~ 164 (449)
T TIGR01316 133 HKKVAVIGAGPAG---LACASELAKAGHSVTVFEA 164 (449)
T ss_pred CCEEEEECcCHHH---HHHHHHHHHCCCcEEEEec
Confidence 6789999988543 3456777788999999975
No 324
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=31.69 E-value=73 Score=24.88 Aligned_cols=31 Identities=26% Similarity=0.314 Sum_probs=22.0
Q ss_pred cEEEEEechhHHHHHHHHHHHHhCCCcEEEEEec
Q psy7291 78 DITIVGHSKAVETALDAAKILAGQGIDAEVINLR 111 (158)
Q Consensus 78 ~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~ 111 (158)
|++||+-|...-. ++-.|.+.|.+|.|++-.
T Consensus 1 DvvIIGaGi~G~~---~A~~La~~G~~V~l~e~~ 31 (358)
T PF01266_consen 1 DVVIIGAGIAGLS---TAYELARRGHSVTLLERG 31 (358)
T ss_dssp EEEEECTSHHHHH---HHHHHHHTTSEEEEEESS
T ss_pred CEEEECcCHHHHH---HHHHHHHCCCeEEEEeec
Confidence 6889988864432 233566689999999776
No 325
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=31.69 E-value=1.7e+02 Score=23.36 Aligned_cols=74 Identities=18% Similarity=0.103 Sum_probs=48.4
Q ss_pred EEEEechh-HHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHH----HHHHhCCC-eEEEEeCCcCCCC-hHHHHHHHHH
Q psy7291 80 TIVGHSKA-VETALDAAKILAGQGIDAEVINLRSLRPLDIETI----TKSVMKTN-YLISVEGGWPQCG-IGSEISARIM 152 (158)
Q Consensus 80 ~ii~~G~~-~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l----~~~~~~~~-~vvvvEe~~~~GG-~g~~i~~~l~ 152 (158)
+|+++|+. +..+.+-++..++-|.+.-++-.+...+.+++.+ ..+++..+ .++..---...|- +.-+....|+
T Consensus 76 viaG~g~~~t~eai~lak~a~~~Gad~il~v~PyY~k~~~~gl~~hf~~ia~a~~lPvilYN~P~~tg~~l~~e~i~~la 155 (299)
T COG0329 76 VIAGVGSNSTAEAIELAKHAEKLGADGILVVPPYYNKPSQEGLYAHFKAIAEAVDLPVILYNIPSRTGVDLSPETIARLA 155 (299)
T ss_pred EEEecCCCcHHHHHHHHHHHHhcCCCEEEEeCCCCcCCChHHHHHHHHHHHHhcCCCEEEEeCccccCCCCCHHHHHHHh
Confidence 77878875 7888888888888899988887777777776543 33333333 3666664444443 5555555555
Q ss_pred c
Q psy7291 153 E 153 (158)
Q Consensus 153 ~ 153 (158)
+
T Consensus 156 ~ 156 (299)
T COG0329 156 E 156 (299)
T ss_pred c
Confidence 5
No 326
>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes.
Probab=31.67 E-value=62 Score=25.94 Aligned_cols=24 Identities=17% Similarity=0.134 Sum_probs=21.7
Q ss_pred cCCHHHHHHHHHHHHhCCCcEEEE
Q psy7291 4 PYNSEDAKGLLKAAIRDPDPVVFL 27 (158)
Q Consensus 4 P~d~~e~~~~l~~a~~~~~P~~iR 27 (158)
..+.+|+.+++++|+++++|++|-
T Consensus 159 ~~~~~eL~~ai~~Al~~~GpslIe 182 (287)
T TIGR02177 159 SGDVAHLKEIIKEAINHKGYALVD 182 (287)
T ss_pred cCCHHHHHHHHHHHHhCCCCEEEE
Confidence 478999999999999999999983
No 327
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=31.54 E-value=2.3e+02 Score=21.46 Aligned_cols=38 Identities=11% Similarity=0.098 Sum_probs=21.6
Q ss_pred cccCCCHHHHHHHHhCCCeEEEEeCCcCCCChHHHHHHHHH
Q psy7291 112 SLRPLDIETITKSVMKTNYLISVEGGWPQCGIGSEISARIM 152 (158)
Q Consensus 112 ~l~Pld~~~l~~~~~~~~~vvvvEe~~~~GG~g~~i~~~l~ 152 (158)
++.+++.+.+.+++...+-++..-. ..|++..+.++++
T Consensus 263 ~~g~~~~~~~~~~~~~ad~~i~~~~---~~~~~~~~~Ea~~ 300 (377)
T cd03798 263 FLGAVPHEEVPAYYAAADVFVLPSL---REGFGLVLLEAMA 300 (377)
T ss_pred EeCCCCHHHHHHHHHhcCeeecchh---hccCChHHHHHHh
Confidence 3445666667777776654443221 2566666666664
No 328
>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed
Probab=31.39 E-value=64 Score=25.79 Aligned_cols=24 Identities=21% Similarity=0.147 Sum_probs=21.7
Q ss_pred cCCHHHHHHHHHHHHhCCCcEEEE
Q psy7291 4 PYNSEDAKGLLKAAIRDPDPVVFL 27 (158)
Q Consensus 4 P~d~~e~~~~l~~a~~~~~P~~iR 27 (158)
..+++|+.++++.|+++++|++|-
T Consensus 175 ~~~~~el~~al~~Al~~~Gp~lIe 198 (286)
T PRK11867 175 DSDVKQLTELIKAAINHKGFSFVE 198 (286)
T ss_pred CCCHHHHHHHHHHHHhCCCCEEEE
Confidence 568999999999999999999983
No 329
>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family. The delineation of this family was based originally, in part, on a discussion and neighbor-joining phylogenetic study by Kyrpides and Woese of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. Recently, Sato, et al. assigned the function ribulose-1,5 bisphosphate isomerase.
Probab=31.29 E-value=2.3e+02 Score=22.76 Aligned_cols=37 Identities=35% Similarity=0.464 Sum_probs=19.2
Q ss_pred EEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCH
Q psy7291 80 TIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDI 118 (158)
Q Consensus 80 ~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~ 118 (158)
+|+++|.. ..++..+..+.++|.+..|+-.-+ .|..+
T Consensus 118 ~ILT~~~S-~tv~~~l~~a~~~~~~f~V~v~Es-rP~~~ 154 (301)
T TIGR00511 118 VVMTHCNS-EAALSVIKTAFEQGKDIEVIATET-RPRKQ 154 (301)
T ss_pred EEEEECCc-HHHHHHHHHHHHcCCcEEEEEecC-CCcch
Confidence 46666632 344444444445556666665444 56544
No 330
>PRK06372 translation initiation factor IF-2B subunit delta; Provisional
Probab=31.27 E-value=2.6e+02 Score=22.01 Aligned_cols=66 Identities=21% Similarity=0.241 Sum_probs=37.5
Q ss_pred EEEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhCCCeEEE-EeCCcCCCC----hHHHHHHHHH
Q psy7291 79 ITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKTNYLIS-VEGGWPQCG----IGSEISARIM 152 (158)
Q Consensus 79 ~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~~~vvv-vEe~~~~GG----~g~~i~~~l~ 152 (158)
.++++-+........-+++|.+.|++++++.-.. +..++++.++|++ .+-=..+|| .|+...+.++
T Consensus 111 ~V~v~ESrP~~eG~~~a~~L~~~GI~vtli~Dsa--------~~~~m~~vd~VlvGAd~V~~nG~v~nkvGT~~~Al~A 181 (253)
T PRK06372 111 SVYILESRPMLEGIDMAKLLVKSGIDVVLLTDAS--------MCEAVLNVDAVIVGSDSVLYDGGLIHKNGTFPLALCA 181 (253)
T ss_pred EEEEecCCCchHHHHHHHHHHHCCCCEEEEehhH--------HHHHHHhCCEEEECccEEecCCCEeehhhHHHHHHHH
Confidence 4455555455455566778888888887763332 3344566676766 332234554 4665555553
No 331
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=31.18 E-value=2.3e+02 Score=26.98 Aligned_cols=53 Identities=19% Similarity=0.327 Sum_probs=35.7
Q ss_pred CCcEEEEEechh-H-------HHHHHHHHHHHhCCCcEEEEEec--------------cccCCCHHHHHHHHhCC
Q psy7291 76 GKDITIVGHSKA-V-------ETALDAAKILAGQGIDAEVINLR--------------SLRPLDIETITKSVMKT 128 (158)
Q Consensus 76 g~~~~ii~~G~~-~-------~~a~ea~~~L~~~gi~~~vi~~~--------------~l~Pld~~~l~~~~~~~ 128 (158)
..+++|++.|+. . .-+..+++.|++.|+.+-+++.. ++.|++.+.+.+++++.
T Consensus 554 ~~kvlvlG~G~~rig~~~efd~~~v~~i~al~~~G~~vI~v~~npetvs~d~~~~D~ly~ep~~~e~vl~i~~~e 628 (1050)
T TIGR01369 554 KKKVLVLGSGPNRIGQGVEFDYCCVHAVLALRELGYETIMINYNPETVSTDYDTSDRLYFEPLTFEDVMNIIELE 628 (1050)
T ss_pred CceEEEecCcccccccccccchHHHHHHHHHHhCCCEEEEEecCCccccccccccceEEEecCCHHHHHHHHhhc
Confidence 458999988864 1 12456677788889887776442 23577777788887754
No 332
>PLN02463 lycopene beta cyclase
Probab=31.18 E-value=70 Score=27.21 Aligned_cols=35 Identities=23% Similarity=0.287 Sum_probs=25.3
Q ss_pred CCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEeccc
Q psy7291 76 GKDITIVGHSKAVETALDAAKILAGQGIDAEVINLRSL 113 (158)
Q Consensus 76 g~~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l 113 (158)
.-|++||+.|..... ++..|.+.|+++.|++....
T Consensus 28 ~~DVvIVGaGpAGLa---lA~~La~~Gl~V~liE~~~~ 62 (447)
T PLN02463 28 VVDLVVVGGGPAGLA---VAQQVSEAGLSVCCIDPSPL 62 (447)
T ss_pred CceEEEECCCHHHHH---HHHHHHHCCCeEEEeccCcc
Confidence 358999999985443 23456667999999987543
No 333
>PRK07116 flavodoxin; Provisional
Probab=31.14 E-value=1.9e+02 Score=20.45 Aligned_cols=28 Identities=7% Similarity=-0.079 Sum_probs=14.7
Q ss_pred hCCCeEEEEeCCcCCCChHHHHHHHHHcC
Q psy7291 126 MKTNYLISVEGGWPQCGIGSEISARIMEI 154 (158)
Q Consensus 126 ~~~~~vvvvEe~~~~GG~g~~i~~~l~~~ 154 (158)
..++.|++.=--. .|++...+..++.+.
T Consensus 75 ~~~D~Iiig~Pv~-~~~~p~~v~~fl~~~ 102 (160)
T PRK07116 75 AEYDVIFLGFPIW-WYVAPRIINTFLESY 102 (160)
T ss_pred HhCCEEEEECChh-ccccHHHHHHHHHhc
Confidence 3455555443333 455666666666543
No 334
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=31.11 E-value=1.3e+02 Score=18.43 Aligned_cols=27 Identities=26% Similarity=0.484 Sum_probs=20.3
Q ss_pred EEEechhHHHHHHHHHHHHhCCCcEEEE
Q psy7291 81 IVGHSKAVETALDAAKILAGQGIDAEVI 108 (158)
Q Consensus 81 ii~~G~~~~~a~ea~~~L~~~gi~~~vi 108 (158)
+|+. ...+.|+++-+.|++.|+++.++
T Consensus 5 ~i~F-~st~~a~~~ek~lk~~gi~~~li 31 (73)
T PF11823_consen 5 LITF-PSTHDAMKAEKLLKKNGIPVRLI 31 (73)
T ss_pred EEEE-CCHHHHHHHHHHHHHCCCcEEEe
Confidence 4444 33567888888999999998887
No 335
>PRK09028 cystathionine beta-lyase; Provisional
Probab=31.11 E-value=3.1e+02 Score=22.86 Aligned_cols=54 Identities=20% Similarity=0.220 Sum_probs=31.4
Q ss_pred HHhCCCcEEEEEeccccCCCHHHHHHHHhCCCeEEEEeC-CcCCCChH--HHHHHHHHcCCC
Q psy7291 98 LAGQGIDAEVINLRSLRPLDIETITKSVMKTNYLISVEG-GWPQCGIG--SEISARIMEIPY 156 (158)
Q Consensus 98 L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~~~vvvvEe-~~~~GG~g--~~i~~~l~~~~~ 156 (158)
++..|+++..+ .|-+.+.+.+.+...-+++.+|. +++.|..- ..|++...++|.
T Consensus 121 l~~~Gi~v~~v-----~~~~~e~l~~~l~~~TklV~lespsNPtg~v~dl~~I~~la~~~g~ 177 (394)
T PRK09028 121 LKGFGIETTYY-----DPMIGEGIRELIRPNTKVLFLESPGSITMEVQDVPTLSRIAHEHDI 177 (394)
T ss_pred hhhcceEEEEE-----CCCCHHHHHHhcCcCceEEEEECCCCCCCcHHHHHHHHHHHHHcCC
Confidence 33445555443 34456677777766557888886 44444332 466666666653
No 336
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=31.02 E-value=1.7e+02 Score=23.81 Aligned_cols=58 Identities=19% Similarity=0.333 Sum_probs=35.7
Q ss_pred cCCCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCC--H--HHHHHHHhCCCeEEEE
Q psy7291 74 VTGKDITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLD--I--ETITKSVMKTNYLISV 134 (158)
Q Consensus 74 ~~g~~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld--~--~~l~~~~~~~~~vvvv 134 (158)
..|..+.||++|.+...+ ++.|...|.++.+++...-.... . ..+.++++..+.|++.
T Consensus 144 l~g~~VgIIG~G~IG~~v---A~~L~~~G~~V~~~d~~~~~~~~~~~~~~~l~ell~~aDiVil~ 205 (330)
T PRK12480 144 VKNMTVAIIGTGRIGAAT---AKIYAGFGATITAYDAYPNKDLDFLTYKDSVKEAIKDADIISLH 205 (330)
T ss_pred cCCCEEEEECCCHHHHHH---HHHHHhCCCEEEEEeCChhHhhhhhhccCCHHHHHhcCCEEEEe
Confidence 447789999999987764 34555668888888743211010 0 1356677776655443
No 337
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=31.02 E-value=46 Score=28.77 Aligned_cols=74 Identities=15% Similarity=0.210 Sum_probs=42.2
Q ss_pred CCCcEEEEEechhHHHHHHHHHHHHhCCCcEE------EEEe---cccc----CCCHHHHHHHHhCCCeEEEEeCCcCCC
Q psy7291 75 TGKDITIVGHSKAVETALDAAKILAGQGIDAE------VINL---RSLR----PLDIETITKSVMKTNYLISVEGGWPQC 141 (158)
Q Consensus 75 ~g~~~~ii~~G~~~~~a~ea~~~L~~~gi~~~------vi~~---~~l~----Pld~~~l~~~~~~~~~vvvvEe~~~~G 141 (158)
.|..++||+||+..+ ..|. .|+..|+++. +|+. .+-+ -|....+.+++++.+.|+.+=.....+
T Consensus 35 kgKtIaIIGyGSqG~--AqAl-NLrdSGvnVvvglr~~~id~~~~s~~kA~~dGF~v~~~~Ea~~~ADvVviLlPDt~q~ 111 (487)
T PRK05225 35 KGKKIVIVGCGAQGL--NQGL-NMRDSGLDISYALRKEAIAEKRASWRKATENGFKVGTYEELIPQADLVINLTPDKQHS 111 (487)
T ss_pred CCCEEEEEccCHHHH--HHhC-CCccccceeEEeccccccccccchHHHHHhcCCccCCHHHHHHhCCEEEEcCChHHHH
Confidence 478999999999887 2232 4666677665 2211 1111 122234778888888766654333344
Q ss_pred ChHHHHHHHH
Q psy7291 142 GIGSEISARI 151 (158)
Q Consensus 142 G~g~~i~~~l 151 (158)
-+...+...|
T Consensus 112 ~v~~~i~p~L 121 (487)
T PRK05225 112 DVVRAVQPLM 121 (487)
T ss_pred HHHHHHHhhC
Confidence 4445555444
No 338
>cd01473 vWA_CTRP CTRP for CS protein-TRAP-related protein: Adhesion of Plasmodium to host cells is an important phenomenon in parasite invasion and in malaria associated pathology.CTRP encodes a protein containing a putative signal sequence followed by a long extracellular region of 1990 amino acids, a transmembrane domain, and a short cytoplasmic segment. The extracellular region of CTRP contains two separated adhesive domains. The first domain contains six 210-amino acid-long homologous VWA domain repeats. The second domain contains seven repeats of 87-60 amino acids in length, which share similarities with the thrombospondin type 1 domain found in a variety of adhesive molecules. Finally, CTRP also contains consensus motifs found in the superfamily of haematopoietin receptors. The VWA domains in these proteins likely mediate protein-protein interactions.
Probab=30.66 E-value=2.1e+02 Score=21.01 Aligned_cols=45 Identities=4% Similarity=0.062 Sum_probs=31.2
Q ss_pred EEEEEechhH----HHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHh
Q psy7291 79 ITIVGHSKAV----ETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVM 126 (158)
Q Consensus 79 ~~ii~~G~~~----~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~ 126 (158)
++|+|=|..- ..+.++++.|+++|+.+-.|-+... +...++.+..
T Consensus 112 ~IllTDG~s~~~~~~~~~~~a~~lk~~gV~i~~vGiG~~---~~~el~~ia~ 160 (192)
T cd01473 112 TMLFTDGNDTSASKKELQDISLLYKEENVKLLVVGVGAA---SENKLKLLAG 160 (192)
T ss_pred EEEEecCCCCCcchhhHHHHHHHHHHCCCEEEEEEeccc---cHHHHHHhcC
Confidence 5566777543 2466788899999998888877753 5666666654
No 339
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=30.66 E-value=1.9e+02 Score=22.12 Aligned_cols=37 Identities=14% Similarity=0.126 Sum_probs=24.6
Q ss_pred HHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhCC
Q psy7291 92 LDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKT 128 (158)
Q Consensus 92 ~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~ 128 (158)
...++.|.++|.++.+++-....-.|.+.+.+.+++.
T Consensus 13 ~~l~~~l~~~g~~v~~~~r~~~d~~~~~~~~~~~~~~ 49 (287)
T TIGR01214 13 RELVQQLSPEGRVVVALTSSQLDLTDPEALERLLRAI 49 (287)
T ss_pred HHHHHHHHhcCCEEEEeCCcccCCCCHHHHHHHHHhC
Confidence 3346667777888777765444445667788888765
No 340
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=30.59 E-value=2.9e+02 Score=26.43 Aligned_cols=52 Identities=19% Similarity=0.401 Sum_probs=36.3
Q ss_pred CcEEEEEechhH-H-------HHHHHHHHHHhCCCcEEEEEec--------------cccCCCHHHHHHHHhCC
Q psy7291 77 KDITIVGHSKAV-E-------TALDAAKILAGQGIDAEVINLR--------------SLRPLDIETITKSVMKT 128 (158)
Q Consensus 77 ~~~~ii~~G~~~-~-------~a~ea~~~L~~~gi~~~vi~~~--------------~l~Pld~~~l~~~~~~~ 128 (158)
.+++|++.|+.. . ...++++.|+++|+.+-+++.. .+-|++.+.+.+++++.
T Consensus 8 ~kvlviG~G~~~igq~~E~d~sg~q~~~aL~e~G~~vi~v~~np~~~~~d~~~ad~~y~ep~~~e~l~~ii~~e 81 (1068)
T PRK12815 8 QKILVIGSGPIVIGQAAEFDYSGTQACLALKEEGYQVVLVNPNPATIMTDPAPADTVYFEPLTVEFVKRIIARE 81 (1068)
T ss_pred CEEEEECCCcchhcchhhhhhHHHHHHHHHHHcCCEEEEEeCCcchhhcCcccCCeeEECCCCHHHHHHHHHHh
Confidence 579999998763 2 2446778888889988777632 23466677788877764
No 341
>cd05126 Mth938 Mth938 domain. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. The function of the protein has not been determined.
Probab=30.47 E-value=46 Score=22.89 Aligned_cols=32 Identities=16% Similarity=0.421 Sum_probs=21.8
Q ss_pred CCcEEEEEechhHH--HHHHHHHHHHhCCCcEEE
Q psy7291 76 GKDITIVGHSKAVE--TALDAAKILAGQGIDAEV 107 (158)
Q Consensus 76 g~~~~ii~~G~~~~--~a~ea~~~L~~~gi~~~v 107 (158)
+.+++||++|.... .--+..+.|.+.|+.+.+
T Consensus 58 ~peivliGTG~~~~~~~~~~~~~~l~~~Gi~ve~ 91 (117)
T cd05126 58 GVEVIVIGTGQSGALKVPPETVEKLEKRGVEVLV 91 (117)
T ss_pred CCCEEEEcCCCCccccCCHHHHHHHHhcCCEEEE
Confidence 67899999998743 234455677777766444
No 342
>PRK07574 formate dehydrogenase; Provisional
Probab=30.27 E-value=1.4e+02 Score=25.05 Aligned_cols=58 Identities=14% Similarity=0.130 Sum_probs=36.1
Q ss_pred ccCCCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEecccc-----CCC---HHHHHHHHhCCCeEEE
Q psy7291 73 RVTGKDITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLR-----PLD---IETITKSVMKTNYLIS 133 (158)
Q Consensus 73 ~~~g~~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~-----Pld---~~~l~~~~~~~~~vvv 133 (158)
...|..+.||++|.+...+ ++.|+.-|.++.+++..... .++ ...+.++++..+.|++
T Consensus 189 ~L~gktVGIvG~G~IG~~v---A~~l~~fG~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l 254 (385)
T PRK07574 189 DLEGMTVGIVGAGRIGLAV---LRRLKPFDVKLHYTDRHRLPEEVEQELGLTYHVSFDSLVSVCDVVTI 254 (385)
T ss_pred ecCCCEEEEECCCHHHHHH---HHHHHhCCCEEEEECCCCCchhhHhhcCceecCCHHHHhhcCCEEEE
Confidence 3457889999999987764 45666668888777754311 011 1235667766654443
No 343
>COG1013 PorB Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit [Energy production and conversion]
Probab=30.27 E-value=65 Score=25.92 Aligned_cols=25 Identities=20% Similarity=0.163 Sum_probs=22.7
Q ss_pred ccCCHHHHHHHHHHHHhCCCcEEEE
Q psy7291 3 SPYNSEDAKGLLKAAIRDPDPVVFL 27 (158)
Q Consensus 3 ~P~d~~e~~~~l~~a~~~~~P~~iR 27 (158)
+.+++.++...++.|++++||.+|-
T Consensus 176 ~~~~~~~l~~~i~kA~~~~Gps~I~ 200 (294)
T COG1013 176 SVGDPKDLTEKIKKAAEHKGPSFID 200 (294)
T ss_pred cccCHHHHHHHHHHHHhccCCeEEE
Confidence 5688999999999999999999984
No 344
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=30.25 E-value=81 Score=29.95 Aligned_cols=52 Identities=27% Similarity=0.392 Sum_probs=36.6
Q ss_pred CcEEEEEechhH-HH-------HHHHHHHHHhCCCcEEEEEec--------------cccCCCHHHHHHHHhCC
Q psy7291 77 KDITIVGHSKAV-ET-------ALDAAKILAGQGIDAEVINLR--------------SLRPLDIETITKSVMKT 128 (158)
Q Consensus 77 ~~~~ii~~G~~~-~~-------a~ea~~~L~~~gi~~~vi~~~--------------~l~Pld~~~l~~~~~~~ 128 (158)
.+++|++.|+.. .. ..++++.|+++|+.+-+++.. ++-|++.+.+.+++++.
T Consensus 8 ~kvLiig~G~~~igq~~e~d~sg~~~~~aLke~G~~vi~v~~~p~~~~~~~~~aD~~y~~p~~~e~l~~ii~~e 81 (1066)
T PRK05294 8 KKILIIGSGPIVIGQACEFDYSGTQACKALREEGYRVVLVNSNPATIMTDPEMADATYIEPITPEFVEKIIEKE 81 (1066)
T ss_pred CEEEEECCchhhhcccccccchHHHHHHHHHHcCCEEEEEcCCcccccCCcccCCEEEECCCCHHHHHHHHHHH
Confidence 579999988752 22 235777888889988887642 34577778888887654
No 345
>PRK07200 aspartate/ornithine carbamoyltransferase family protein; Validated
Probab=29.98 E-value=2.4e+02 Score=23.72 Aligned_cols=43 Identities=14% Similarity=0.223 Sum_probs=27.5
Q ss_pred CCcEEEEEe-----chhHHHHHHHHHHHHhCCCcEEEEEeccccCCCH
Q psy7291 76 GKDITIVGH-----SKAVETALDAAKILAGQGIDAEVINLRSLRPLDI 118 (158)
Q Consensus 76 g~~~~ii~~-----G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~ 118 (158)
|.+++|+.- |-....+...+..+..-|.++.++.+..+.|.++
T Consensus 187 g~kVaivg~~~~~~g~~~~Va~Sl~~~~~~lG~~v~~~~P~~~~~~~~ 234 (395)
T PRK07200 187 GKKIAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEGYDLMPE 234 (395)
T ss_pred CCEEEEEeccccccCCcchHHHHHHHHHHHcCCEEEEECCCccCCCHH
Confidence 346777654 5444333333444555699999999998777654
No 346
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=29.91 E-value=1.1e+02 Score=24.23 Aligned_cols=35 Identities=14% Similarity=0.065 Sum_probs=24.9
Q ss_pred CHHHHHHHHhCCCeEEEEeCCcCCCChHHHHHHHHHcCCCC
Q psy7291 117 DIETITKSVMKTNYLISVEGGWPQCGIGSEISARIMEIPYS 157 (158)
Q Consensus 117 d~~~l~~~~~~~~~vvvvEe~~~~GG~g~~i~~~l~~~~~~ 157 (158)
-++.+..+-+ .+|+|+= .||.|+..++.|+..|+.
T Consensus 21 G~~~lekl~~--~~V~VvG----iGGVGSw~veALaRsGig 55 (263)
T COG1179 21 GEDGLEKLKQ--AHVCVVG----IGGVGSWAVEALARSGIG 55 (263)
T ss_pred ChhHHHHHhh--CcEEEEe----cCchhHHHHHHHHHcCCC
Confidence 3445554433 3577764 799999999999999873
No 347
>PRK02947 hypothetical protein; Provisional
Probab=29.86 E-value=95 Score=24.03 Aligned_cols=31 Identities=13% Similarity=0.152 Sum_probs=23.0
Q ss_pred cEEEEEechhHHHHHHHHHHHHhCCCcEEEE
Q psy7291 78 DITIVGHSKAVETALDAAKILAGQGIDAEVI 108 (158)
Q Consensus 78 ~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi 108 (158)
=+++|++........++++.+++.|+.+-.|
T Consensus 109 v~i~iS~sG~t~~~i~~~~~a~~~g~~vI~i 139 (246)
T PRK02947 109 VLIVVSNSGRNPVPIEMALEAKERGAKVIAV 139 (246)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHCCCEEEEE
Confidence 3455777777788999999999988664444
No 348
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=29.76 E-value=1.1e+02 Score=23.95 Aligned_cols=33 Identities=21% Similarity=0.188 Sum_probs=26.1
Q ss_pred CCcEEEEEechhHHHHHHHHHHHHhCCCcEEEE
Q psy7291 76 GKDITIVGHSKAVETALDAAKILAGQGIDAEVI 108 (158)
Q Consensus 76 g~~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi 108 (158)
..++++|+-|......+..++.|.+.+.++.++
T Consensus 98 ~~~~llIaGGiGiaPl~~l~~~l~~~~~~v~l~ 130 (281)
T PRK06222 98 FGTVVCVGGGVGIAPVYPIAKALKEAGNKVITI 130 (281)
T ss_pred CCeEEEEeCcCcHHHHHHHHHHHHHCCCeEEEE
Confidence 357999999999888888888887767666655
No 349
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=29.53 E-value=3.3e+02 Score=22.54 Aligned_cols=70 Identities=14% Similarity=0.127 Sum_probs=38.1
Q ss_pred cEEEEEechhHHHHHHHHH----HHH--hCCCcEEEEEeccccCCCHHHHHHHHhCCCeEEEEeCCcCCCChHHHHHHHH
Q psy7291 78 DITIVGHSKAVETALDAAK----ILA--GQGIDAEVINLRSLRPLDIETITKSVMKTNYLISVEGGWPQCGIGSEISARI 151 (158)
Q Consensus 78 ~~~ii~~G~~~~~a~ea~~----~L~--~~gi~~~vi~~~~l~Pld~~~l~~~~~~~~~vvvvEe~~~~GG~g~~i~~~l 151 (158)
+-++|-|+|++....+.++ .++ ..|+++.++++... +.+.+..-+..++.|++-=-.+ .+|.-..+..++
T Consensus 248 ~kv~IvY~S~~GnTe~mA~~ia~g~~~~~~g~~v~~~~~~~~---~~~~i~~~~~~~d~ii~GspT~-~~~~~~~~~~~l 323 (394)
T PRK11921 248 NQVTILYDTMWNSTRRMAEAIAEGIKKANKDVTVKLYNSAKS---DKNDIITEVFKSKAILVGSSTI-NRGILSSTAAIL 323 (394)
T ss_pred CcEEEEEECCchHHHHHHHHHHHHHhhcCCCCeEEEEECCCC---CHHHHHHHHHhCCEEEEECCCc-CccccHHHHHHH
Confidence 4456777787766555544 455 45677888776543 3344433344566666554333 455434444443
No 350
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=29.45 E-value=1.6e+02 Score=24.24 Aligned_cols=32 Identities=25% Similarity=0.368 Sum_probs=24.9
Q ss_pred CCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEe
Q psy7291 76 GKDITIVGHSKAVETALDAAKILAGQGIDAEVINL 110 (158)
Q Consensus 76 g~~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~ 110 (158)
+.+++||+.|.. .+|.+..|.+.|.+++++..
T Consensus 144 ~~~vvViGgG~i---g~E~A~~l~~~g~~Vtlv~~ 175 (396)
T PRK09754 144 ERSVVIVGAGTI---GLELAASATQRRCKVTVIEL 175 (396)
T ss_pred CCeEEEECCCHH---HHHHHHHHHHcCCeEEEEec
Confidence 567999988854 55667778888999999875
No 351
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=29.36 E-value=2.4e+02 Score=26.58 Aligned_cols=48 Identities=23% Similarity=0.434 Sum_probs=32.9
Q ss_pred CCCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCH--HHHHHHH
Q psy7291 75 TGKDITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDI--ETITKSV 125 (158)
Q Consensus 75 ~g~~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~--~~l~~~~ 125 (158)
.|++++||+-|. .+.+++..+...|.+++++.-+.-.+++. +.+....
T Consensus 446 ~Gk~VvVIGGG~---tA~D~A~ta~R~Ga~Vtlv~rr~~~~mpa~~~e~~~a~ 495 (944)
T PRK12779 446 KGKEVFVIGGGN---TAMDAARTAKRLGGNVTIVYRRTKSEMPARVEELHHAL 495 (944)
T ss_pred CCCEEEEECCCH---HHHHHHHHHHHcCCEEEEEEecCcccccccHHHHHHHH
Confidence 367899998885 45566777777788899998776555553 3444443
No 352
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=29.09 E-value=2.2e+02 Score=22.85 Aligned_cols=78 Identities=14% Similarity=0.165 Sum_probs=48.1
Q ss_pred CCcEEEEEech-hHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHH----HHhCC--CeEEEEeCCcCCC-ChHHHH
Q psy7291 76 GKDITIVGHSK-AVETALDAAKILAGQGIDAEVINLRSLRPLDIETITK----SVMKT--NYLISVEGGWPQC-GIGSEI 147 (158)
Q Consensus 76 g~~~~ii~~G~-~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~----~~~~~--~~vvvvEe~~~~G-G~g~~i 147 (158)
|+--+|++.|+ .+..+.+.++..++.|.+.-++-.+...|.+++.+.+ +++.. -.|++..--...| -+..++
T Consensus 76 grvpvi~Gv~~~~t~~ai~~a~~A~~~Gad~vlv~~P~y~~~~~~~l~~yf~~va~a~~~lPv~iYn~P~~tg~~l~~~~ 155 (309)
T cd00952 76 GRVPVFVGATTLNTRDTIARTRALLDLGADGTMLGRPMWLPLDVDTAVQFYRDVAEAVPEMAIAIYANPEAFKFDFPRAA 155 (309)
T ss_pred CCCCEEEEeccCCHHHHHHHHHHHHHhCCCEEEECCCcCCCCCHHHHHHHHHHHHHhCCCCcEEEEcCchhcCCCCCHHH
Confidence 34446677774 5677777777777778887777777666766665444 34444 2566665433333 345555
Q ss_pred HHHHHc
Q psy7291 148 SARIME 153 (158)
Q Consensus 148 ~~~l~~ 153 (158)
...|.+
T Consensus 156 l~~L~~ 161 (309)
T cd00952 156 WAELAQ 161 (309)
T ss_pred HHHHhc
Confidence 555554
No 353
>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]
Probab=29.08 E-value=2.1e+02 Score=20.15 Aligned_cols=54 Identities=9% Similarity=0.102 Sum_probs=38.2
Q ss_pred CcEEEEEeccccCCCHHHHHHHHh-CCCeEEEE-----eCCcCCCChH-----HHHHHHHHcCCC
Q psy7291 103 IDAEVINLRSLRPLDIETITKSVM-KTNYLISV-----EGGWPQCGIG-----SEISARIMEIPY 156 (158)
Q Consensus 103 i~~~vi~~~~l~Pld~~~l~~~~~-~~~~vvvv-----Ee~~~~GG~g-----~~i~~~l~~~~~ 156 (158)
.++.+|.+.+.--+|.+.+++.++ +.+.|+++ |=|+..|..- +.+.+.|.|-|+
T Consensus 28 ~~vRiIrv~CsGrvn~~fvl~Al~~GaDGV~v~GC~~geCHy~~GN~ka~rR~~~lke~l~elgi 92 (132)
T COG1908 28 PNVRIIRVMCSGRVNPEFVLKALRKGADGVLVAGCKIGECHYISGNYKAKRRMELLKELLKELGI 92 (132)
T ss_pred CceEEEEeeccCccCHHHHHHHHHcCCCeEEEecccccceeeeccchHHHHHHHHHHHHHHHhCC
Confidence 568899999999999988777665 46788876 5566666652 455566666554
No 354
>TIGR00140 hupD hydrogenase expression/formation protein. C at 64 and 67 are believed to be metal binding. Postulated to be involved in processing or hydrogenase. Superfamily suggests that it is a peptidase/protease.
Probab=29.03 E-value=1.9e+02 Score=19.75 Aligned_cols=41 Identities=7% Similarity=0.021 Sum_probs=24.3
Q ss_pred HHHHHHhC-C--CcEEEEEeccccCCCHHHHHHHHhCCCeEEEEeCCc
Q psy7291 94 AAKILAGQ-G--IDAEVINLRSLRPLDIETITKSVMKTNYLISVEGGW 138 (158)
Q Consensus 94 a~~~L~~~-g--i~~~vi~~~~l~Pld~~~l~~~~~~~~~vvvvEe~~ 138 (158)
++++|++. + .++.+++..+.-+ .+...+.+++.+++|+-..
T Consensus 3 v~~~L~~~~~~~~~v~vid~gt~~~----~l~~~l~~~d~viiVDA~~ 46 (134)
T TIGR00140 3 LVEALQQRYAFPDNVTLLDGGTQGL----YLLPLIESADRLIILDAVD 46 (134)
T ss_pred HHHHHHHhCCCCCCeEEEecCccHH----HHHHHHhcCCeEEEEeccc
Confidence 45556543 2 2477787777432 2455556778888888543
No 355
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=28.93 E-value=1e+02 Score=24.82 Aligned_cols=32 Identities=38% Similarity=0.532 Sum_probs=25.0
Q ss_pred CCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEe
Q psy7291 76 GKDITIVGHSKAVETALDAAKILAGQGIDAEVINL 110 (158)
Q Consensus 76 g~~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~ 110 (158)
+.+++||+-|.. .++++..|.+.|.++.+++.
T Consensus 18 ~~~VvIIG~G~a---Gl~aA~~l~~~g~~v~lie~ 49 (352)
T PRK12770 18 GKKVAIIGAGPA---GLAAAGYLACLGYEVHVYDK 49 (352)
T ss_pred CCEEEEECcCHH---HHHHHHHHHHCCCcEEEEeC
Confidence 678999998843 34567777788999999975
No 356
>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=28.89 E-value=3.5e+02 Score=22.76 Aligned_cols=52 Identities=17% Similarity=0.208 Sum_probs=27.1
Q ss_pred HhCCCcEEEEEeccccCCCHHHHHHHHhCCCeEEEEeC-CcCCCChH--HHHHHHHHcCC
Q psy7291 99 AGQGIDAEVINLRSLRPLDIETITKSVMKTNYLISVEG-GWPQCGIG--SEISARIMEIP 155 (158)
Q Consensus 99 ~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~~~vvvvEe-~~~~GG~g--~~i~~~l~~~~ 155 (158)
+..|+++..++. .|.+.+.+.++..-++|++|. +++.|-.- .+|++...++|
T Consensus 125 ~~~Gv~v~~vd~-----~d~e~l~~ai~~~tklV~l~sp~NPtG~v~di~~I~~la~~~g 179 (431)
T PRK08248 125 PKLGITVKFVDP-----SDPENFEAAITDKTKALFAETIGNPKGDVLDIEAVAAIAHEHG 179 (431)
T ss_pred HhCCEEEEEECC-----CCHHHHHHhcCCCCeEEEEECCCCCCCcccCHHHHHHHHHHcC
Confidence 334554444432 355667776654445666664 23344332 45666666555
No 357
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=28.88 E-value=1.3e+02 Score=25.15 Aligned_cols=33 Identities=21% Similarity=0.261 Sum_probs=26.3
Q ss_pred CCcEEEEEechhH-HHHHHHHHHHHhCCCcEEEE
Q psy7291 76 GKDITIVGHSKAV-ETALDAAKILAGQGIDAEVI 108 (158)
Q Consensus 76 g~~~~ii~~G~~~-~~a~ea~~~L~~~gi~~~vi 108 (158)
|..+++.-+|+.. ..+.+.++.|.+.|.++.++
T Consensus 3 ~k~IllgiTGSiaa~~~~~ll~~L~~~g~~V~vv 36 (390)
T TIGR00521 3 NKKILLGVTGGIAAYKTVELVRELVRQGAEVKVI 36 (390)
T ss_pred CCEEEEEEeCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 6788898888754 55777888898888888777
No 358
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=28.88 E-value=2.2e+02 Score=22.32 Aligned_cols=75 Identities=19% Similarity=0.135 Sum_probs=43.1
Q ss_pred EEEEEech-hHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHH----HhCC-CeEEEEeCCcCCC-ChHHHHHHHH
Q psy7291 79 ITIVGHSK-AVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKS----VMKT-NYLISVEGGWPQC-GIGSEISARI 151 (158)
Q Consensus 79 ~~ii~~G~-~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~----~~~~-~~vvvvEe~~~~G-G~g~~i~~~l 151 (158)
-++++.|. .+..+.+-++..++.|.+.-++-++...+.+++.+.++ ++.. -.|+...--...| .+...+...|
T Consensus 72 ~vi~gv~~~~~~~~i~~a~~a~~~G~d~v~~~pP~~~~~~~~~i~~~~~~ia~~~~~pv~lYn~P~~~g~~l~~~~~~~L 151 (292)
T PRK03170 72 PVIAGTGSNSTAEAIELTKFAEKAGADGALVVTPYYNKPTQEGLYQHFKAIAEATDLPIILYNVPGRTGVDILPETVARL 151 (292)
T ss_pred cEEeecCCchHHHHHHHHHHHHHcCCCEEEECCCcCCCCCHHHHHHHHHHHHhcCCCCEEEEECccccCCCCCHHHHHHH
Confidence 45566664 56677777777777788877777776666666654443 3332 3456554322222 2445555555
Q ss_pred Hc
Q psy7291 152 ME 153 (158)
Q Consensus 152 ~~ 153 (158)
.+
T Consensus 152 ~~ 153 (292)
T PRK03170 152 AE 153 (292)
T ss_pred Hc
Confidence 43
No 359
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=28.80 E-value=1.4e+02 Score=19.75 Aligned_cols=33 Identities=21% Similarity=0.101 Sum_probs=26.0
Q ss_pred CCcEEEEEechhHHHHHHHHHHHHhCCCcEEEE
Q psy7291 76 GKDITIVGHSKAVETALDAAKILAGQGIDAEVI 108 (158)
Q Consensus 76 g~~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi 108 (158)
.+.+.++++|.....+.+....|..-|..+..+
T Consensus 13 ~~~i~i~g~g~s~~~a~~~~~~l~~~~~~~~~~ 45 (139)
T cd05013 13 ARRIYIFGVGSSGLVAEYLAYKLLRLGKPVVLL 45 (139)
T ss_pred CCEEEEEEcCchHHHHHHHHHHHHHcCCceEEe
Confidence 467999999999999999888888776644433
No 360
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=28.64 E-value=2.8e+02 Score=23.85 Aligned_cols=34 Identities=26% Similarity=0.447 Sum_probs=26.2
Q ss_pred CCCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEec
Q psy7291 75 TGKDITIVGHSKAVETALDAAKILAGQGIDAEVINLR 111 (158)
Q Consensus 75 ~g~~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~ 111 (158)
.|++++||+.|.. +.|++..|...+.+++++...
T Consensus 350 ~gk~VvVVGgG~~---g~e~A~~L~~~~~~Vtlv~~~ 383 (517)
T PRK15317 350 KGKRVAVIGGGNS---GVEAAIDLAGIVKHVTVLEFA 383 (517)
T ss_pred CCCEEEEECCCHH---HHHHHHHHHhcCCEEEEEEEC
Confidence 3678999998864 566777787778889988764
No 361
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=28.57 E-value=1.4e+02 Score=24.96 Aligned_cols=57 Identities=12% Similarity=0.192 Sum_probs=36.2
Q ss_pred cCCCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccC---CCHHHHHHHHhCCCeEEE
Q psy7291 74 VTGKDITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRP---LDIETITKSVMKTNYLIS 133 (158)
Q Consensus 74 ~~g~~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~P---ld~~~l~~~~~~~~~vvv 133 (158)
..|+.+.||++|.+...+ ++.|+.-|+++-++|...-.. .+...+.++++..+.|.+
T Consensus 114 l~gktvGIIG~G~IG~~v---a~~l~a~G~~V~~~Dp~~~~~~~~~~~~~l~ell~~aDiV~l 173 (381)
T PRK00257 114 LAERTYGVVGAGHVGGRL---VRVLRGLGWKVLVCDPPRQEAEGDGDFVSLERILEECDVISL 173 (381)
T ss_pred cCcCEEEEECCCHHHHHH---HHHHHHCCCEEEEECCcccccccCccccCHHHHHhhCCEEEE
Confidence 347889999999987764 445666688888887532110 111246777777664443
No 362
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=28.50 E-value=1.2e+02 Score=21.81 Aligned_cols=32 Identities=28% Similarity=0.496 Sum_probs=21.8
Q ss_pred CCCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEE
Q psy7291 75 TGKDITIVGHSKAVETALDAAKILAGQGIDAEVIN 109 (158)
Q Consensus 75 ~g~~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~ 109 (158)
.+++++||+.|..+ .+++..|.+.|.+++++.
T Consensus 166 ~~k~V~VVG~G~SA---~d~a~~l~~~g~~V~~~~ 197 (203)
T PF13738_consen 166 KGKRVVVVGGGNSA---VDIAYALAKAGKSVTLVT 197 (203)
T ss_dssp TTSEEEEE--SHHH---HHHHHHHTTTCSEEEEEE
T ss_pred CCCcEEEEcChHHH---HHHHHHHHhhCCEEEEEe
Confidence 37899999998654 456667777787777764
No 363
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=28.33 E-value=80 Score=23.57 Aligned_cols=33 Identities=3% Similarity=-0.067 Sum_probs=28.8
Q ss_pred HHhCCCeEEEEeCCcCCCChHHHHHHHHHcCCC
Q psy7291 124 SVMKTNYLISVEGGWPQCGIGSEISARIMEIPY 156 (158)
Q Consensus 124 ~~~~~~~vvvvEe~~~~GG~g~~i~~~l~~~~~ 156 (158)
.+.+.++|++||+-..+||--....+.+.+.|.
T Consensus 113 ~i~~G~rVlIVDDviaTGgT~~a~~~lv~~aGa 145 (189)
T PRK09219 113 FLSEGDRVLIIDDFLANGQAALGLIDIIEQAGA 145 (189)
T ss_pred hCCCCCEEEEEeehhhcChHHHHHHHHHHHCCC
Confidence 566788999999999999998999999888775
No 364
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=28.29 E-value=2.3e+02 Score=22.73 Aligned_cols=35 Identities=20% Similarity=0.195 Sum_probs=26.0
Q ss_pred cEEEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccC
Q psy7291 78 DITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRP 115 (158)
Q Consensus 78 ~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~P 115 (158)
++.+|+.|.|.... +..|.+.|+.+.++|...=++
T Consensus 2 kIafIGLG~MG~pm---A~~L~~aG~~v~v~~r~~~ka 36 (286)
T COG2084 2 KIAFIGLGIMGSPM---AANLLKAGHEVTVYNRTPEKA 36 (286)
T ss_pred eEEEEcCchhhHHH---HHHHHHCCCEEEEEeCChhhh
Confidence 58899999988764 456777788888887765443
No 365
>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA. Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=28.28 E-value=3.3e+02 Score=22.14 Aligned_cols=56 Identities=7% Similarity=0.027 Sum_probs=29.2
Q ss_pred hCCCcEEEEEeccccCCCHHHHHHHHhCCCeEEEEeC-CcCCCChH--HHHHHHHHcCC
Q psy7291 100 GQGIDAEVINLRSLRPLDIETITKSVMKTNYLISVEG-GWPQCGIG--SEISARIMEIP 155 (158)
Q Consensus 100 ~~gi~~~vi~~~~l~Pld~~~l~~~~~~~~~vvvvEe-~~~~GG~g--~~i~~~l~~~~ 155 (158)
..|..+..+.+..-.-+|.+.+.+.+....+++++-. ++..|..- +.|++...++|
T Consensus 129 ~~g~~v~~v~~~~~~~~~~~~l~~~i~~~t~lv~i~~~~n~tG~~~~~~~i~~~~~~~~ 187 (398)
T TIGR03392 129 QTGAKVVKLPIGADLLPDIRQLPELLTPRTRILALGQMSNVTGGCPDLARAITLAHQYG 187 (398)
T ss_pred HcCcEEEEEecCCCCCcCHHHHHHHhccCceEEEEECccccccccCCHHHHHHHHHHcC
Confidence 3465555554432122456667666654445555543 44555542 45666665554
No 366
>PRK13984 putative oxidoreductase; Provisional
Probab=28.22 E-value=1e+02 Score=27.03 Aligned_cols=32 Identities=34% Similarity=0.471 Sum_probs=24.6
Q ss_pred CCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEe
Q psy7291 76 GKDITIVGHSKAVETALDAAKILAGQGIDAEVINL 110 (158)
Q Consensus 76 g~~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~ 110 (158)
+.+++||+.|. ..+.++..|.+.|.++.|++-
T Consensus 283 ~~~v~IIGaG~---aGl~aA~~L~~~G~~v~vie~ 314 (604)
T PRK13984 283 NKKVAIVGSGP---AGLSAAYFLATMGYEVTVYES 314 (604)
T ss_pred CCeEEEECCCH---HHHHHHHHHHHCCCeEEEEec
Confidence 67899999774 344467778888999999853
No 367
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=28.20 E-value=1.9e+02 Score=23.24 Aligned_cols=34 Identities=29% Similarity=0.353 Sum_probs=24.8
Q ss_pred CCcEEEEEechhHHHHHHHHHHHHhCCCc-EEEEEecc
Q psy7291 76 GKDITIVGHSKAVETALDAAKILAGQGID-AEVINLRS 112 (158)
Q Consensus 76 g~~~~ii~~G~~~~~a~ea~~~L~~~gi~-~~vi~~~~ 112 (158)
+..++||+.|.. +++++..|.+.|.+ ++|+..+.
T Consensus 172 g~~vvViG~G~~---g~e~A~~l~~~g~~~Vtvi~~~~ 206 (352)
T PRK12770 172 GKKVVVVGAGLT---AVDAALEAVLLGAEKVYLAYRRT 206 (352)
T ss_pred CCEEEEECCCHH---HHHHHHHHHHcCCCeEEEEeecc
Confidence 567899988854 55566677667887 99997654
No 368
>PF06418 CTP_synth_N: CTP synthase N-terminus; InterPro: IPR017456 CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism, catalysing the synthesis of CTP from UTP by amination of the pyrimidine ring at the 4-position []. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found roughly 500 bp upstream of enolase in both beta (Nitrosomonas europaea) and gamma (Escherichia coli) subdivisions of Proteobacterium [].; GO: 0003883 CTP synthase activity, 0006221 pyrimidine nucleotide biosynthetic process; PDB: 2VO1_A 3NVA_B 1VCN_A 1VCO_A 1VCM_A 3IHL_B 2AD5_A 1S1M_B.
Probab=28.17 E-value=1.2e+02 Score=24.31 Aligned_cols=50 Identities=28% Similarity=0.329 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhC----CCeEEEEeCC
Q psy7291 88 VETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMK----TNYLISVEGG 137 (158)
Q Consensus 88 ~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~----~~~vvvvEe~ 137 (158)
+....-++++|+.-|+..+++-+|+=.|++++...++..- .+.|+.+-+-
T Consensus 188 TKPtQhSVk~Lr~~GI~PDilvcRs~~~l~~~~k~KIalFc~V~~e~VI~~~Dv 241 (276)
T PF06418_consen 188 TKPTQHSVKELRSIGIQPDILVCRSERPLDEEIKEKIALFCNVPPENVISAPDV 241 (276)
T ss_dssp HHHHHHHHHHHHHTT---SEEEEEESS---HHHHHHHHHHCTS-GGGEEEEE--
T ss_pred CccHHHHHHHHHhCCCCCCEEEEcCCCCCCHHHHHHHHccCCCCHHHEEEcCCc
Confidence 3456667888999999999999999999999876655442 2466665543
No 369
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=28.10 E-value=1e+02 Score=23.62 Aligned_cols=29 Identities=31% Similarity=0.349 Sum_probs=0.0
Q ss_pred cEEEEEechhHHHHHHHHHHHHhCCCcEEEEE
Q psy7291 78 DITIVGHSKAVETALDAAKILAGQGIDAEVIN 109 (158)
Q Consensus 78 ~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~ 109 (158)
|++||+-|...-. ++..|.+.|.++.+++
T Consensus 2 dvvIIG~G~aGl~---aA~~l~~~g~~v~lie 30 (300)
T TIGR01292 2 DVIIIGAGPAGLT---AAIYAARANLKTLIIE 30 (300)
T ss_pred cEEEECCCHHHHH---HHHHHHHCCCCEEEEe
No 370
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=28.05 E-value=2.9e+02 Score=22.16 Aligned_cols=51 Identities=22% Similarity=0.417 Sum_probs=33.8
Q ss_pred cCCCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhCCCeEE
Q psy7291 74 VTGKDITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKTNYLI 132 (158)
Q Consensus 74 ~~g~~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~~~vv 132 (158)
..|.+++||+-|..+..-+ +..|.++|..+++.+-++ +.+.+.++..+-|+
T Consensus 155 l~Gk~vvVvGrs~~VG~Pl--a~lL~~~gAtVtv~hs~t------~~l~~~~~~ADIvV 205 (285)
T PRK14191 155 IKGKDVVIIGASNIVGKPL--AMLMLNAGASVSVCHILT------KDLSFYTQNADIVC 205 (285)
T ss_pred CCCCEEEEECCCchhHHHH--HHHHHHCCCEEEEEeCCc------HHHHHHHHhCCEEE
Confidence 3489999999987776654 445666787777776544 23556666665443
No 371
>KOG1017|consensus
Probab=27.90 E-value=2.9e+02 Score=21.35 Aligned_cols=53 Identities=19% Similarity=0.197 Sum_probs=29.5
Q ss_pred EEEEechhHHHHHHHHHHHHhCCCcEEEEEe--ccccCCCHHHHHHHHhCCC--eEEEEeCCc
Q psy7291 80 TIVGHSKAVETALDAAKILAGQGIDAEVINL--RSLRPLDIETITKSVMKTN--YLISVEGGW 138 (158)
Q Consensus 80 ~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~--~~l~Pld~~~l~~~~~~~~--~vvvvEe~~ 138 (158)
-|+++|.++- +|++-|++.|..-+.|-+ -|+.|.-.+. +.++.. .|++-|=|.
T Consensus 197 Pi~stGnTV~---~Av~VL~EhgVp~s~IiL~sLF~tP~gak~---i~~~fP~itiltseihp 253 (267)
T KOG1017|consen 197 PIISTGNTVC---KAVEVLKEHGVPDSNIILVSLFITPTGAKN---ITRKFPYITILTSEIHP 253 (267)
T ss_pred eeecCCccHH---HHHHHHHHcCCCcccEEEEEeeecchhhHH---HHHhCCeEEEEeeccee
Confidence 3577777654 556667777765443333 2446765443 444443 456666554
No 372
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=27.86 E-value=1.1e+02 Score=18.57 Aligned_cols=72 Identities=15% Similarity=0.042 Sum_probs=39.4
Q ss_pred EEEEEechhHHHHHHHHHHHHhC-CCcEEEEEeccccCCCHHHH--HHHHhCCCeEEEEeCCcCCCChHHHHHHHHHcCC
Q psy7291 79 ITIVGHSKAVETALDAAKILAGQ-GIDAEVINLRSLRPLDIETI--TKSVMKTNYLISVEGGWPQCGIGSEISARIMEIP 155 (158)
Q Consensus 79 ~~ii~~G~~~~~a~ea~~~L~~~-gi~~~vi~~~~l~Pld~~~l--~~~~~~~~~vvvvEe~~~~GG~g~~i~~~l~~~~ 155 (158)
+.+++.|.....+......|.+. |.++.++. +...... ...+.+.+.++++-..... .--..+++.+.++|
T Consensus 1 i~i~g~G~s~~~a~~~~~~l~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~d~~i~iS~sg~t-~~~~~~~~~a~~~g 74 (87)
T cd04795 1 IFVIGIGGSGAIAAYFALELLELTGIEVVALI-----ATELEHASLLSLLRKGDVVIALSYSGRT-EELLAALEIAKELG 74 (87)
T ss_pred CEEEEcCHHHHHHHHHHHHHhcccCCceEEeC-----CcHHHHHHHHhcCCCCCEEEEEECCCCC-HHHHHHHHHHHHcC
Confidence 35789999888888888888776 66654432 2222211 1233444566666543321 12233455555555
Q ss_pred C
Q psy7291 156 Y 156 (158)
Q Consensus 156 ~ 156 (158)
.
T Consensus 75 ~ 75 (87)
T cd04795 75 I 75 (87)
T ss_pred C
Confidence 3
No 373
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=27.83 E-value=1.9e+02 Score=19.24 Aligned_cols=47 Identities=17% Similarity=0.109 Sum_probs=33.5
Q ss_pred CCcEEEEEechhHHHHHHHHH-HHHhCCCcEEEEEecccc--CCCHHHHHHH
Q psy7291 76 GKDITIVGHSKAVETALDAAK-ILAGQGIDAEVINLRSLR--PLDIETITKS 124 (158)
Q Consensus 76 g~~~~ii~~G~~~~~a~ea~~-~L~~~gi~~~vi~~~~l~--Pld~~~l~~~ 124 (158)
+.|++++ |+.+...++-++ .+...|+.+.+|+....- .+|-+.+.+.
T Consensus 47 ~~Dvill--~PQv~~~~~~i~~~~~~~~ipv~~I~~~~Yg~~~~dg~~vl~~ 96 (99)
T cd05565 47 DYDLVIL--APQMASYYDELKKDTDRLGIKLVTTTGKQYIELTRDPDGALKF 96 (99)
T ss_pred CCCEEEE--cChHHHHHHHHHHHhhhcCCCEEEeCHHHHhHHhCCHHHHHHH
Confidence 4565444 676766665554 456678999999998888 8998876554
No 374
>PRK10953 cysJ sulfite reductase subunit alpha; Provisional
Probab=27.82 E-value=1.6e+02 Score=26.18 Aligned_cols=58 Identities=12% Similarity=0.071 Sum_probs=38.8
Q ss_pred EEEEEechhHHHHHHHHHHH----HhCCCcEEEEEeccccCCCHHHHHHHHhCCCeEEEEeCCcCCCCh
Q psy7291 79 ITIVGHSKAVETALDAAKIL----AGQGIDAEVINLRSLRPLDIETITKSVMKTNYLISVEGGWPQCGI 143 (158)
Q Consensus 79 ~~ii~~G~~~~~a~ea~~~L----~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~~~vvvvEe~~~~GG~ 143 (158)
-+.|-|||.++.+.+.++.| ++.|+.+.++++..+.|- .+.+.+.++++=-.+-.|-.
T Consensus 63 ~v~IlygSqTGnae~lA~~la~~l~~~g~~~~v~~~~d~~~~-------~L~~~~~vl~v~ST~G~Ge~ 124 (600)
T PRK10953 63 GITLISASQTGNARRVAEQLRDDLLAAKLNVNLVNAGDYKFK-------QIAQEKLLIVVTSTQGEGEP 124 (600)
T ss_pred eEEEEEEcCchHHHHHHHHHHHHHHhCCCCcEEechHhCCHh-------HhccCCeEEEEECCCCCCCC
Confidence 45566999999888877655 456888888877655332 23455677777666655544
No 375
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=27.80 E-value=1.1e+02 Score=24.89 Aligned_cols=29 Identities=34% Similarity=0.346 Sum_probs=22.2
Q ss_pred cEEEEEechhHHHHHHHHHHHHhCCCcEEEEE
Q psy7291 78 DITIVGHSKAVETALDAAKILAGQGIDAEVIN 109 (158)
Q Consensus 78 ~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~ 109 (158)
+++||+.|...-. |+..|+++|++++|++
T Consensus 3 siaIVGaGiAGl~---aA~~L~~aG~~vtV~e 31 (331)
T COG3380 3 SIAIVGAGIAGLA---AAYALREAGREVTVFE 31 (331)
T ss_pred cEEEEccchHHHH---HHHHHHhcCcEEEEEE
Confidence 5899998865433 4667888899999985
No 376
>PRK08861 cystathionine gamma-synthase; Provisional
Probab=27.77 E-value=3.6e+02 Score=22.41 Aligned_cols=40 Identities=18% Similarity=0.239 Sum_probs=21.0
Q ss_pred CCHHHHHHHHhCCCeEEEEeC-CcCCCChH--HHHHHHHHcCC
Q psy7291 116 LDIETITKSVMKTNYLISVEG-GWPQCGIG--SEISARIMEIP 155 (158)
Q Consensus 116 ld~~~l~~~~~~~~~vvvvEe-~~~~GG~g--~~i~~~l~~~~ 155 (158)
.|.+.+.+.+....++|++|. +++.|.+- +.|.+...++|
T Consensus 126 ~d~e~l~~~i~~~tklV~lesP~NPtG~v~dl~~I~~la~~~g 168 (388)
T PRK08861 126 SDAAALDAALAKKPKLILLETPSNPLVRVVDIAELCQKAKAVG 168 (388)
T ss_pred CCHHHHHHhcCcCCeEEEEECCCCCCCcccCHHHHHHHHHHcC
Confidence 455556666554446666664 34444432 35555555444
No 377
>PRK07811 cystathionine gamma-synthase; Provisional
Probab=27.76 E-value=3.5e+02 Score=22.29 Aligned_cols=20 Identities=25% Similarity=0.419 Sum_probs=9.9
Q ss_pred CHHHHHHHHhCCCeEEEEeC
Q psy7291 117 DIETITKSVMKTNYLISVEG 136 (158)
Q Consensus 117 d~~~l~~~~~~~~~vvvvEe 136 (158)
|.+.+.+.+....++|++|.
T Consensus 135 d~e~l~~~i~~~tklV~ie~ 154 (388)
T PRK07811 135 DLDAVRAAITPRTKLIWVET 154 (388)
T ss_pred CHHHHHHhcCcCCeEEEEEC
Confidence 44555555543334555554
No 378
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=27.72 E-value=2.5e+02 Score=23.09 Aligned_cols=49 Identities=12% Similarity=0.087 Sum_probs=33.9
Q ss_pred EEEEeccc--cCCCHHHHHHHHhCCCeEEEEeCCcCCCChHHHHHHHHHcCC
Q psy7291 106 EVINLRSL--RPLDIETITKSVMKTNYLISVEGGWPQCGIGSEISARIMEIP 155 (158)
Q Consensus 106 ~vi~~~~l--~Pld~~~l~~~~~~~~~vvvvEe~~~~GG~g~~i~~~l~~~~ 155 (158)
.++++.+. +|...+.+.+.++++.+|++++...-..+. .+|.++..+.|
T Consensus 217 s~~dl~v~l~~~~t~eeV~~~l~~~~ri~~~~~~~~~~~~-~~~~e~~~d~g 267 (333)
T TIGR01546 217 HVHSIMVELKKPVTKDDIIDILENTPRVLLFEKKKGFEST-AELIEFARDLH 267 (333)
T ss_pred EEEEEEEEECCCCCHHHHHHHHHhCCcEEEEecccCCccH-HHHHHHHHHcC
Confidence 33444444 899999999999999999999765522232 46666666554
No 379
>PRK00934 ribose-phosphate pyrophosphokinase; Provisional
Probab=27.66 E-value=1.1e+02 Score=24.30 Aligned_cols=58 Identities=28% Similarity=0.362 Sum_probs=35.4
Q ss_pred CCCcEEE----EEechhHHHHHHHHHHHHhCCCcEEEEEeccccC-CCHHHHHHHHhC-CCeEEEEeCC
Q psy7291 75 TGKDITI----VGHSKAVETALDAAKILAGQGIDAEVINLRSLRP-LDIETITKSVMK-TNYLISVEGG 137 (158)
Q Consensus 75 ~g~~~~i----i~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~P-ld~~~l~~~~~~-~~~vvvvEe~ 137 (158)
+|++++| +++|.+...+ ++.|++.|- .-+.+.++.| |..+.+..+.+. .+.|++.+..
T Consensus 203 ~Gk~VlIVDDIi~TG~Tl~~a---a~~Lk~~GA--~~V~~~~~H~i~~~~a~~~l~~~~i~~i~~tnti 266 (285)
T PRK00934 203 KGKDVLIVDDIISTGGTMATA---IKILKEQGA--KKVYVACVHPVLVGDAILKLYNAGVDEIIVTDTL 266 (285)
T ss_pred CCCEEEEEcCccccHHHHHHH---HHHHHHCCC--CEEEEEEEeeccCcHHHHHHHhCCCCEEEEcCCC
Confidence 3667776 6888887765 455666653 2444445556 444555555553 6788888764
No 380
>PRK12342 hypothetical protein; Provisional
Probab=27.63 E-value=3e+02 Score=21.59 Aligned_cols=13 Identities=15% Similarity=0.373 Sum_probs=8.7
Q ss_pred CCcEEEEEechhH
Q psy7291 76 GKDITIVGHSKAV 88 (158)
Q Consensus 76 g~~~~ii~~G~~~ 88 (158)
|.+++++++|+..
T Consensus 51 g~~Vtvls~Gp~~ 63 (254)
T PRK12342 51 GDEIAALTVGGSL 63 (254)
T ss_pred CCEEEEEEeCCCh
Confidence 5677777777653
No 381
>PF09383 NIL: NIL domain; InterPro: IPR018449 This domain is found at the C terminus of ABC transporter proteins involved in D-methionine transport as well as a number of ferredoxin-like proteins. This domain is likely to act as a substrate binding domain. The domain has been named after a conserved sequence in some members of the family. ; PDB: 2QRR_A 3CED_A 2QSW_A 3TUZ_D 3TUJ_D 3DHX_B 3TUI_H 3DHW_D.
Probab=27.62 E-value=1.5e+02 Score=18.09 Aligned_cols=29 Identities=28% Similarity=0.305 Sum_probs=19.1
Q ss_pred EEEEechhHHHHHHHHHHHHhCCCcEEEE
Q psy7291 80 TIVGHSKAVETALDAAKILAGQGIDAEVI 108 (158)
Q Consensus 80 ~ii~~G~~~~~a~ea~~~L~~~gi~~~vi 108 (158)
.++..-.......++.+.|+++|+.++++
T Consensus 48 l~l~l~g~~~~~~~a~~~L~~~~v~vEvl 76 (76)
T PF09383_consen 48 LILELPGDDEEIEKAIAYLREQGVEVEVL 76 (76)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTTEEEEEE
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCeEEEC
Confidence 33444333344677889999999888775
No 382
>PLN02530 histidine-tRNA ligase
Probab=27.60 E-value=2.3e+02 Score=24.32 Aligned_cols=58 Identities=16% Similarity=0.163 Sum_probs=37.5
Q ss_pred CCcEEEEEechh-HHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHh-CCCeEEEEeC
Q psy7291 76 GKDITIVGHSKA-VETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVM-KTNYLISVEG 136 (158)
Q Consensus 76 g~~~~ii~~G~~-~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~-~~~~vvvvEe 136 (158)
..+++|+..+.. ...+++.++.|+++|+.+.+. +.. +.+ .+.++..-+ +.+.++++.+
T Consensus 401 ~~dVlVi~~~~~~~~~A~~ia~~LR~~Gi~vevd-~~~-~~l-~k~ik~A~k~g~~~iviiG~ 460 (487)
T PLN02530 401 QVDDVVFALDEDLQGAAAGVASRLREKGRSVDLV-LEP-KKL-KWVFKHAERIGAKRLVLVGA 460 (487)
T ss_pred CCcEEEEEcChHHHHHHHHHHHHHHHCCCeEEEe-cCC-CCH-HHHHHHHHHCCCCEEEEEch
Confidence 357888876654 467899999999999988653 322 334 233444333 4567777754
No 383
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=27.51 E-value=1.1e+02 Score=25.87 Aligned_cols=32 Identities=38% Similarity=0.481 Sum_probs=24.6
Q ss_pred CCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEe
Q psy7291 76 GKDITIVGHSKAVETALDAAKILAGQGIDAEVINL 110 (158)
Q Consensus 76 g~~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~ 110 (158)
+.+++||+.|... +.|+..|.+.|.++.+++-
T Consensus 143 ~~~VvIIGaGpAG---l~aA~~l~~~G~~V~vie~ 174 (471)
T PRK12810 143 GKKVAVVGSGPAG---LAAADQLARAGHKVTVFER 174 (471)
T ss_pred CCEEEEECcCHHH---HHHHHHHHhCCCcEEEEec
Confidence 6789999999544 3356677778999999974
No 384
>PF00156 Pribosyltran: Phosphoribosyl transferase domain; InterPro: IPR000836 The name PRT comes from phosphoribosyltransferase (PRTase) enzymes, which carry out phosphoryl transfer reactions on 5-phosphoribosyl-alpha1-pyrophosphate PRPP, an activated form of ribose-5-phosphate. Members of Phosphoribosyltransferase (PRT) are catalytic and are regulatory proteins involved in nucleotide synthesis and salvage []. This includes a range of diverse phosphoribosyl transferase enzymes including adenine phosphoribosyltransferase (2.4.2.7 from EC); hypoxanthine-guanine-xanthine phosphoribosyltransferase; hypoxanthine phosphoribosyltransferase (2.4.2.8 from EC); ribose-phosphate pyrophosphokinase (2.7.6.1 from EC); amidophosphoribosyltransferase (2.4.2.14 from EC); orotate phosphoribosyltransferase (2.4.2.10 from EC);uracil phosphoribosyltransferase (2.4.2.9 from EC); and xanthine-guanine phosphoribosyltransferase (2.4.2.22 from EC). Not all PRT proteins are enzymes. For example, in some bacteria PRT proteins regulate the expression of purine and pyrimidine synthetic genes. Members of PRT are defined by the protein fold and by a short 13-residue sequence motif, The motif consists of four hydrophobic amino acids, two acidic amino acids and seven amino acids of variable character, usually including glycine and threonine. The motif has been predicted to be a PRPP-binding site in advance of structural information [, ]. Apart of this motif, different PRT proteins have a low level of sequence identity, less than 15%. The PRT sequence motif is only found in PRTases from the nucleotide synthesis and salvage pathways. Other PRTases, from the tryptophan, histidine and nicotinamide synthetic and salvage pathways, lack the PRT sequence motif and appear to be unrelated to each other and unrelated to the PRT family.; GO: 0009116 nucleoside metabolic process; PDB: 2JBH_A 1Y0B_D 2FXV_B 1GPH_1 1AO0_D 1ORO_B 1VCH_C 2WNS_A 2PRZ_B 2PS1_A ....
Probab=27.45 E-value=69 Score=21.23 Aligned_cols=30 Identities=17% Similarity=0.038 Sum_probs=26.0
Q ss_pred CCCeEEEEeCCcCCCChHHHHHHHHHcCCC
Q psy7291 127 KTNYLISVEGGWPQCGIGSEISARIMEIPY 156 (158)
Q Consensus 127 ~~~~vvvvEe~~~~GG~g~~i~~~l~~~~~ 156 (158)
+.++|++||+-...|+--..+.+.|.+.|.
T Consensus 87 ~gk~vliVDDvi~tG~Tl~~~~~~L~~~g~ 116 (125)
T PF00156_consen 87 KGKRVLIVDDVIDTGGTLKEAIELLKEAGA 116 (125)
T ss_dssp TTSEEEEEEEEESSSHHHHHHHHHHHHTTB
T ss_pred cceeEEEEeeeEcccHHHHHHHHHHHhCCC
Confidence 457999999999889888899999988875
No 385
>TIGR01328 met_gam_lyase methionine gamma-lyase. This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.
Probab=27.33 E-value=3.6e+02 Score=22.28 Aligned_cols=39 Identities=8% Similarity=0.051 Sum_probs=17.4
Q ss_pred CHHHHHHHHhCCCeEEEEeC-CcCCCChH--HHHHHHHHcCC
Q psy7291 117 DIETITKSVMKTNYLISVEG-GWPQCGIG--SEISARIMEIP 155 (158)
Q Consensus 117 d~~~l~~~~~~~~~vvvvEe-~~~~GG~g--~~i~~~l~~~~ 155 (158)
|.+.+.+.+....++|++|. +++.|... ..|++...++|
T Consensus 133 d~e~l~~~i~~~tklV~le~p~Np~G~v~dl~~I~~la~~~g 174 (391)
T TIGR01328 133 IPEEVKAHIKDNTKIVYFETPANPTMKLIDMERVCRDAHSQG 174 (391)
T ss_pred CHHHHHHhhccCCeEEEEECCCCCCCcccCHHHHHHHHHHcC
Confidence 34445555443334555664 22333332 34555444443
No 386
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=27.20 E-value=2.4e+02 Score=22.28 Aligned_cols=75 Identities=13% Similarity=0.090 Sum_probs=44.8
Q ss_pred EEEEEec-hhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHH----HHhCC--CeEEEEeCCcCCC-ChHHHHHHH
Q psy7291 79 ITIVGHS-KAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITK----SVMKT--NYLISVEGGWPQC-GIGSEISAR 150 (158)
Q Consensus 79 ~~ii~~G-~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~----~~~~~--~~vvvvEe~~~~G-G~g~~i~~~ 150 (158)
-++++.| ..+..+.+.++..++-|.+.-++-.+...|.+++.+.+ +++.. -.|++...-...| .+..++...
T Consensus 72 pvi~gv~~~~t~~~i~la~~a~~~Gad~v~v~~P~y~~~~~~~i~~yf~~v~~~~~~lpv~lYn~P~~tg~~l~~~~i~~ 151 (290)
T TIGR00683 72 ALIAQVGSVNLKEAVELGKYATELGYDCLSAVTPFYYKFSFPEIKHYYDTIIAETGGLNMIVYSIPFLTGVNMGIEQFGE 151 (290)
T ss_pred cEEEecCCCCHHHHHHHHHHHHHhCCCEEEEeCCcCCCCCHHHHHHHHHHHHhhCCCCCEEEEeCccccccCcCHHHHHH
Confidence 3556666 35667777777777778887777666666666665433 33333 3667775543333 355555555
Q ss_pred HHc
Q psy7291 151 IME 153 (158)
Q Consensus 151 l~~ 153 (158)
|.+
T Consensus 152 L~~ 154 (290)
T TIGR00683 152 LYK 154 (290)
T ss_pred Hhc
Confidence 554
No 387
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=27.18 E-value=1.3e+02 Score=21.68 Aligned_cols=53 Identities=17% Similarity=0.142 Sum_probs=32.8
Q ss_pred CCcE-EEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhCCCeEEEEeC
Q psy7291 76 GKDI-TIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKTNYLISVEG 136 (158)
Q Consensus 76 g~~~-~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~~~vvvvEe 136 (158)
.+|+ .+|++........++++.++++|..+-.|.-..-.|+ .+. .+.++.+..
T Consensus 101 ~~Dv~I~iS~SG~t~~~i~~~~~ak~~Ga~vI~IT~~~~s~L-----a~~---aD~~l~~~~ 154 (177)
T cd05006 101 PGDVLIGISTSGNSPNVLKALEAAKERGMKTIALTGRDGGKL-----LEL---ADIEIHVPS 154 (177)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCCch-----hhh---CCEEEEeCC
Confidence 3455 4466666778899999999999866544443333443 333 455666543
No 388
>PRK12444 threonyl-tRNA synthetase; Reviewed
Probab=27.17 E-value=2.6e+02 Score=24.93 Aligned_cols=58 Identities=24% Similarity=0.342 Sum_probs=36.9
Q ss_pred CCcEEEEEech--hHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHH-HhCCCeEEEEeC
Q psy7291 76 GKDITIVGHSK--AVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKS-VMKTNYLISVEG 136 (158)
Q Consensus 76 g~~~~ii~~G~--~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~-~~~~~~vvvvEe 136 (158)
..++.|+..+. ....|.+.++.|+++|+.+.+ +.+. +.+..+ ++.+ ..+.+.++++-+
T Consensus 541 p~qV~Ii~~~~~~~~~~a~~la~~LR~~Gi~vei-d~~~-~sl~kq-~k~A~k~g~~~~iiiG~ 601 (639)
T PRK12444 541 PVQVKVIPVSNAVHVQYADEVADKLAQAGIRVER-DERD-EKLGYK-IREAQMQKIPYVLVIGD 601 (639)
T ss_pred CceEEEEEcccHHHHHHHHHHHHHHHHCCCEEEE-ECCC-CCHHHH-HHHHHHcCCCEEEEEcc
Confidence 45788888886 456788888888888888776 3332 334333 3433 234566777654
No 389
>PRK06234 methionine gamma-lyase; Provisional
Probab=27.17 E-value=3.6e+02 Score=22.30 Aligned_cols=37 Identities=16% Similarity=0.258 Sum_probs=19.0
Q ss_pred CHHHHHHHHhCCCeEEEEeC-CcCCCChH--HHHHHHHHc
Q psy7291 117 DIETITKSVMKTNYLISVEG-GWPQCGIG--SEISARIME 153 (158)
Q Consensus 117 d~~~l~~~~~~~~~vvvvEe-~~~~GG~g--~~i~~~l~~ 153 (158)
|.+.+.+.+....+++++|. +++.|... .+|.+...+
T Consensus 138 d~e~l~~~i~~~tklI~iesP~NPtG~v~dl~~I~~la~~ 177 (400)
T PRK06234 138 NLEEVRNALKANTKVVYLETPANPTLKVTDIKAISNIAHE 177 (400)
T ss_pred CHHHHHHHhccCCeEEEEECCCCCCCCcCCHHHHHHHHHh
Confidence 45556665554445666664 33444433 345555544
No 390
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=27.17 E-value=1.1e+02 Score=26.70 Aligned_cols=33 Identities=21% Similarity=0.220 Sum_probs=26.6
Q ss_pred CCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEec
Q psy7291 76 GKDITIVGHSKAVETALDAAKILAGQGIDAEVINLR 111 (158)
Q Consensus 76 g~~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~ 111 (158)
.+.++|+++|..... .++.|+++|+++-+||..
T Consensus 417 ~~hiiI~G~G~~G~~---la~~L~~~g~~vvvId~d 449 (558)
T PRK10669 417 CNHALLVGYGRVGSL---LGEKLLAAGIPLVVIETS 449 (558)
T ss_pred CCCEEEECCChHHHH---HHHHHHHCCCCEEEEECC
Confidence 367999999988776 567888889999888754
No 391
>COG1533 SplB DNA repair photolyase [DNA replication, recombination, and repair]
Probab=27.03 E-value=3.3e+02 Score=21.87 Aligned_cols=63 Identities=14% Similarity=0.092 Sum_probs=39.1
Q ss_pred HHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHh----CCCeEEEEeCCcCCCChHHHHHHHHH
Q psy7291 90 TALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVM----KTNYLISVEGGWPQCGIGSEISARIM 152 (158)
Q Consensus 90 ~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~----~~~~vvvvEe~~~~GG~g~~i~~~l~ 152 (158)
.=++|++.|.+.|+.+.+.--+-|-.++.+.+.+.+. ..-..++.......++....+.+++.
T Consensus 170 ~Ri~al~~l~eaGi~~~v~v~PIiP~~~d~e~e~~l~~~~~ag~~~v~~~~l~~~~~~~~~~~~~~~ 236 (297)
T COG1533 170 ERLEALKELSEAGIPVGLFVAPIIPGLNDEELERILEAAAEAGARVVVYGTLRLRLDILRRFKEYLK 236 (297)
T ss_pred HHHHHHHHHHHCCCeEEEEEecccCCCChHHHHHHHHHHHHcCCCeeEeeeeeccHHHHHHHHHHHH
Confidence 3357899999999999998777776666544433333 22334444444446666666655544
No 392
>PRK05569 flavodoxin; Provisional
Probab=26.95 E-value=2.1e+02 Score=19.50 Aligned_cols=32 Identities=9% Similarity=-0.078 Sum_probs=17.7
Q ss_pred EEEechhH----HHHHHHHHHHHhCCCcEEEEEecc
Q psy7291 81 IVGHSKAV----ETALDAAKILAGQGIDAEVINLRS 112 (158)
Q Consensus 81 ii~~G~~~----~~a~ea~~~L~~~gi~~~vi~~~~ 112 (158)
+|-|+|+. ..|...++.+++.|..+.++++..
T Consensus 5 ~iiY~S~tGnT~~iA~~i~~~~~~~g~~v~~~~~~~ 40 (141)
T PRK05569 5 SIIYWSCGGNVEVLANTIADGAKEAGAEVTIKHVAD 40 (141)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHhCCCeEEEEECCc
Confidence 44444444 344444555666677777776544
No 393
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=26.90 E-value=1.5e+02 Score=19.74 Aligned_cols=39 Identities=15% Similarity=0.126 Sum_probs=25.5
Q ss_pred cEEEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCC
Q psy7291 78 DITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPL 116 (158)
Q Consensus 78 ~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pl 116 (158)
=+++++.........++++.++++|.++=.+.-..-.|+
T Consensus 50 ~vi~iS~sG~t~~~~~~~~~a~~~g~~vi~iT~~~~s~l 88 (128)
T cd05014 50 VVIAISNSGETDELLNLLPHLKRRGAPIIAITGNPNSTL 88 (128)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEeCCCCCch
Confidence 355566666778899999999998766444433333343
No 394
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=26.81 E-value=1.9e+02 Score=24.56 Aligned_cols=35 Identities=23% Similarity=0.334 Sum_probs=25.9
Q ss_pred CCCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEecc
Q psy7291 75 TGKDITIVGHSKAVETALDAAKILAGQGIDAEVINLRS 112 (158)
Q Consensus 75 ~g~~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~ 112 (158)
.|..++|+++|.+...+ +..|+..|.++.+++...
T Consensus 211 ~Gk~VlViG~G~IG~~v---A~~lr~~Ga~ViV~d~dp 245 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGC---AQRLRGLGARVIVTEVDP 245 (425)
T ss_pred CCCEEEEECCCHHHHHH---HHHHHhCCCEEEEEcCCc
Confidence 47889999999877654 455666688888876543
No 395
>PLN02908 threonyl-tRNA synthetase
Probab=26.75 E-value=2.6e+02 Score=25.22 Aligned_cols=60 Identities=17% Similarity=0.284 Sum_probs=39.9
Q ss_pred CCcEEEEEechh-HHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHH-HhCCCeEEEEeCCc
Q psy7291 76 GKDITIVGHSKA-VETALDAAKILAGQGIDAEVINLRSLRPLDIETITKS-VMKTNYLISVEGGW 138 (158)
Q Consensus 76 g~~~~ii~~G~~-~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~-~~~~~~vvvvEe~~ 138 (158)
..+++|+..+.. ...|.+.++.|++.|+.+.+ +... +.+..+ ++.+ ..+.+.+++|-+.-
T Consensus 589 p~qv~Vipv~~~~~~~A~~va~~LR~~Gi~vev-d~~~-~~l~kk-ir~A~~~g~~~viivG~~E 650 (686)
T PLN02908 589 PRQAIVVPISEKSQDYAEEVRAQLHAAGFYVDV-DVTD-RKIQKK-VREAQLAQYNYILVVGEAE 650 (686)
T ss_pred CceEEEEEECHHHHHHHHHHHHHHHHCCCEEEE-ECCC-CCHHHH-HHHHHHcCCCEEEEECchH
Confidence 357888888864 46788889999999998876 3332 344443 4443 33567777776543
No 396
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=26.68 E-value=1.1e+02 Score=22.76 Aligned_cols=32 Identities=25% Similarity=0.330 Sum_probs=23.0
Q ss_pred CCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEe
Q psy7291 76 GKDITIVGHSKAVETALDAAKILAGQGIDAEVINL 110 (158)
Q Consensus 76 g~~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~ 110 (158)
|..++|++.|.+... +++.|.+.|.++.+.|.
T Consensus 28 gk~v~I~G~G~vG~~---~A~~L~~~G~~Vvv~D~ 59 (200)
T cd01075 28 GKTVAVQGLGKVGYK---LAEHLLEEGAKLIVADI 59 (200)
T ss_pred CCEEEEECCCHHHHH---HHHHHHHCCCEEEEEcC
Confidence 678999999976654 35667777877776653
No 397
>PRK06242 flavodoxin; Provisional
Probab=26.62 E-value=1.2e+02 Score=20.87 Aligned_cols=28 Identities=4% Similarity=-0.027 Sum_probs=12.4
Q ss_pred CeEEEEeCCcCCC-ChHHHHHHHHHcCCC
Q psy7291 129 NYLISVEGGWPQC-GIGSEISARIMEIPY 156 (158)
Q Consensus 129 ~~vvvvEe~~~~G-G~g~~i~~~l~~~~~ 156 (158)
++++++--+...+ +....+.+.+.+.|.
T Consensus 75 k~~~~f~t~g~~~~~~~~~l~~~l~~~g~ 103 (150)
T PRK06242 75 KKAFIFSTSGLPFLKYHKALKKKLKEKGF 103 (150)
T ss_pred CeEEEEECCCCCcchHHHHHHHHHHHCCC
Confidence 4555554433222 233455555555443
No 398
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=26.60 E-value=1e+02 Score=27.46 Aligned_cols=32 Identities=28% Similarity=0.428 Sum_probs=25.4
Q ss_pred CCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEe
Q psy7291 76 GKDITIVGHSKAVETALDAAKILAGQGIDAEVINL 110 (158)
Q Consensus 76 g~~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~ 110 (158)
+.+++||+.|+..-. |+..|...|.++.|++-
T Consensus 327 ~~~VaIIGaGpAGLs---aA~~L~~~G~~V~V~E~ 358 (654)
T PRK12769 327 DKRVAIIGAGPAGLA---CADVLARNGVAVTVYDR 358 (654)
T ss_pred CCEEEEECCCHHHHH---HHHHHHHCCCeEEEEec
Confidence 789999999986544 45667778999999974
No 399
>PRK14694 putative mercuric reductase; Provisional
Probab=26.58 E-value=1.6e+02 Score=24.81 Aligned_cols=35 Identities=23% Similarity=0.342 Sum_probs=26.3
Q ss_pred CCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEeccc
Q psy7291 76 GKDITIVGHSKAVETALDAAKILAGQGIDAEVINLRSL 113 (158)
Q Consensus 76 g~~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l 113 (158)
++.++||+.|.. .+|.+..|.+.|.+++++....+
T Consensus 178 ~~~vvViG~G~~---G~E~A~~l~~~g~~Vtlv~~~~~ 212 (468)
T PRK14694 178 PERLLVIGASVV---ALELAQAFARLGSRVTVLARSRV 212 (468)
T ss_pred CCeEEEECCCHH---HHHHHHHHHHcCCeEEEEECCCC
Confidence 468999988854 55667778888999999975433
No 400
>PRK10565 putative carbohydrate kinase; Provisional
Probab=26.57 E-value=2.1e+02 Score=24.79 Aligned_cols=42 Identities=24% Similarity=0.359 Sum_probs=32.2
Q ss_pred cEE-EEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHH
Q psy7291 78 DIT-IVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIE 119 (158)
Q Consensus 78 ~~~-ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~ 119 (158)
.++ +++.|..-.-++-+++.|.+.|.++.|+-+.....+..+
T Consensus 62 ~v~vl~G~GNNGGDG~v~AR~L~~~G~~V~v~~~~~~~~~~~~ 104 (508)
T PRK10565 62 HWLVLCGHGNNGGDGYVVARLAQAAGIDVTLLAQESDKPLPEE 104 (508)
T ss_pred eEEEEEcCCCchHHHHHHHHHHHHCCCceEEEEECCcccCCHH
Confidence 454 457788999999999999999999999877654555443
No 401
>PLN02852 ferredoxin-NADP+ reductase
Probab=26.56 E-value=2.7e+02 Score=24.09 Aligned_cols=59 Identities=15% Similarity=0.302 Sum_probs=37.9
Q ss_pred CCcEEEEEechhHHHHHHHHHH--------------------HHhCCCc-EEEEEeccc--cCCCHHHHHHHHhCCCeEE
Q psy7291 76 GKDITIVGHSKAVETALDAAKI--------------------LAGQGID-AEVINLRSL--RPLDIETITKSVMKTNYLI 132 (158)
Q Consensus 76 g~~~~ii~~G~~~~~a~ea~~~--------------------L~~~gi~-~~vi~~~~l--~Pld~~~l~~~~~~~~~vv 132 (158)
+..++||+.|... ++++.. |+..|++ |.|+-=|-. .+|..++++++.+....-+
T Consensus 166 gk~VvVIGgGnvA---lD~Ar~L~~~~~~l~~tdi~~~~l~~l~~~~~~~V~iv~RRg~~~~~ft~~Elrel~~l~~~~~ 242 (491)
T PLN02852 166 SDTAVVLGQGNVA---LDCARILLRPTDELASTDIAEHALEALRGSSVRKVYLVGRRGPVQAACTAKELRELLGLKNVRV 242 (491)
T ss_pred CCEEEEECCCHHH---HHHHHHHHhCccccccccccHHHHHHHhhCCCCEEEEEEcCChHhCCCCHHHHHHHhccCCCce
Confidence 6789999999654 333333 3333654 788776665 5788888888876555444
Q ss_pred EEeCC
Q psy7291 133 SVEGG 137 (158)
Q Consensus 133 vvEe~ 137 (158)
++++.
T Consensus 243 ~~~~~ 247 (491)
T PLN02852 243 RIKEA 247 (491)
T ss_pred eechh
Confidence 45543
No 402
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=26.53 E-value=2.3e+02 Score=22.07 Aligned_cols=12 Identities=8% Similarity=0.102 Sum_probs=6.6
Q ss_pred HHHHHHHHHcCC
Q psy7291 144 GSEISARIMEIP 155 (158)
Q Consensus 144 g~~i~~~l~~~~ 155 (158)
..++.+.+.+.|
T Consensus 100 ~~~l~~~l~~~g 111 (291)
T TIGR01505 100 SKRFAKAVKEKG 111 (291)
T ss_pred HHHHHHHHHHcC
Confidence 345666665544
No 403
>KOG0029|consensus
Probab=26.49 E-value=1.1e+02 Score=26.54 Aligned_cols=34 Identities=32% Similarity=0.458 Sum_probs=25.9
Q ss_pred CCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEecc
Q psy7291 76 GKDITIVGHSKAVETALDAAKILAGQGIDAEVINLRS 112 (158)
Q Consensus 76 g~~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~ 112 (158)
..+++||+-|... +.|+++|.+.|++|.|+-.|-
T Consensus 15 ~~~VIVIGAGiaG---LsAArqL~~~G~~V~VLEARd 48 (501)
T KOG0029|consen 15 KKKVIVIGAGLAG---LSAARQLQDFGFDVLVLEARD 48 (501)
T ss_pred CCcEEEECCcHHH---HHHHHHHHHcCCceEEEeccC
Confidence 5689999888532 347889999999988886653
No 404
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=26.31 E-value=1.4e+02 Score=25.76 Aligned_cols=41 Identities=22% Similarity=0.292 Sum_probs=30.4
Q ss_pred CCcEEEEEechhH-HHHHHHHHHHHhCCCcEEEEE----eccccCC
Q psy7291 76 GKDITIVGHSKAV-ETALDAAKILAGQGIDAEVIN----LRSLRPL 116 (158)
Q Consensus 76 g~~~~ii~~G~~~-~~a~ea~~~L~~~gi~~~vi~----~~~l~Pl 116 (158)
++.++|.-+|+.. ..+.+.++.|.+.|.++.++= ..|+.|+
T Consensus 70 ~k~IllgVtGsIAayka~~lvr~L~k~G~~V~VvmT~sA~~fv~p~ 115 (475)
T PRK13982 70 SKRVTLIIGGGIAAYKALDLIRRLKERGAHVRCVLTKAAQQFVTPL 115 (475)
T ss_pred CCEEEEEEccHHHHHHHHHHHHHHHhCcCEEEEEECcCHHHHhhHH
Confidence 6778888888755 567788889999999988873 2445554
No 405
>PLN03050 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=26.24 E-value=98 Score=24.15 Aligned_cols=32 Identities=25% Similarity=0.269 Sum_probs=26.3
Q ss_pred cEE-EEEechhHHHHHHHHHHHHhCCCcEEEEE
Q psy7291 78 DIT-IVGHSKAVETALDAAKILAGQGIDAEVIN 109 (158)
Q Consensus 78 ~~~-ii~~G~~~~~a~ea~~~L~~~gi~~~vi~ 109 (158)
.++ +++.|....-.+-+++.|.+.|.++.|+-
T Consensus 62 ~V~VlcG~GNNGGDGlv~AR~L~~~G~~V~v~~ 94 (246)
T PLN03050 62 RVLLVCGPGNNGGDGLVAARHLAHFGYEVTVCY 94 (246)
T ss_pred eEEEEECCCCCchhHHHHHHHHHHCCCeEEEEE
Confidence 444 45678888999999999999999999886
No 406
>cd05009 SIS_GlmS_GlmD_2 SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=26.24 E-value=2.2e+02 Score=19.43 Aligned_cols=33 Identities=30% Similarity=0.368 Sum_probs=25.1
Q ss_pred CCcEEEEEechhHHHHHHHHHHHHhCC-CcEEEE
Q psy7291 76 GKDITIVGHSKAVETALDAAKILAGQG-IDAEVI 108 (158)
Q Consensus 76 g~~~~ii~~G~~~~~a~ea~~~L~~~g-i~~~vi 108 (158)
-+.+.+++.|.....|.+..-.+.+.+ +.+..+
T Consensus 13 ~~~i~~~G~G~s~~~a~e~~~kl~e~~~i~~~~~ 46 (153)
T cd05009 13 AKSFYVLGRGPNYGTALEGALKLKETSYIHAEAY 46 (153)
T ss_pred cCcEEEEcCCCCHHHHHHHHHHHHHHHhhcceec
Confidence 467999999999999999887776653 454444
No 407
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=26.23 E-value=2.3e+02 Score=23.41 Aligned_cols=33 Identities=18% Similarity=0.270 Sum_probs=24.3
Q ss_pred CCcEEEEE-echhHHHHHHHHHHHHhCCCcEEEEEec
Q psy7291 76 GKDITIVG-HSKAVETALDAAKILAGQGIDAEVINLR 111 (158)
Q Consensus 76 g~~~~ii~-~G~~~~~a~ea~~~L~~~gi~~~vi~~~ 111 (158)
...++||+ .|.|....- ..|.+.|+.+.+++..
T Consensus 98 ~~~I~IiGG~GlmG~slA---~~l~~~G~~V~~~d~~ 131 (374)
T PRK11199 98 LRPVVIVGGKGQLGRLFA---KMLTLSGYQVRILEQD 131 (374)
T ss_pred cceEEEEcCCChhhHHHH---HHHHHCCCeEEEeCCC
Confidence 46799998 999887653 3455668888888753
No 408
>PRK08558 adenine phosphoribosyltransferase; Provisional
Probab=26.16 E-value=1e+02 Score=23.83 Aligned_cols=33 Identities=6% Similarity=-0.056 Sum_probs=28.5
Q ss_pred HHhCCCeEEEEeCCcCCCChHHHHHHHHHcCCC
Q psy7291 124 SVMKTNYLISVEGGWPQCGIGSEISARIMEIPY 156 (158)
Q Consensus 124 ~~~~~~~vvvvEe~~~~GG~g~~i~~~l~~~~~ 156 (158)
.+...++|++||+-...||--..+.+.+.+.|.
T Consensus 172 ~l~~G~rVLIVDDvi~TG~Tl~~~~~ll~~~ga 204 (238)
T PRK08558 172 ALKKGDRVLIVDDIIRSGETQRALLDLARQAGA 204 (238)
T ss_pred HcCCcCEEEEEecccccCHHHHHHHHHHHHcCC
Confidence 456778999999999999988889999888774
No 409
>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated
Probab=26.15 E-value=85 Score=25.33 Aligned_cols=25 Identities=16% Similarity=0.032 Sum_probs=22.3
Q ss_pred ccCCHHHHHHHHHHHHhCCCcEEEE
Q psy7291 3 SPYNSEDAKGLLKAAIRDPDPVVFL 27 (158)
Q Consensus 3 ~P~d~~e~~~~l~~a~~~~~P~~iR 27 (158)
...+.+|+.+++++|+++++|++|-
T Consensus 175 ~v~~~~eL~~ai~~A~~~~GpalIe 199 (301)
T PRK05778 175 FAGDVKQLVELIKKAISHKGFAFID 199 (301)
T ss_pred ccCCHHHHHHHHHHHHhCCCCEEEE
Confidence 3678999999999999999999984
No 410
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=26.14 E-value=2.5e+02 Score=22.63 Aligned_cols=36 Identities=14% Similarity=0.326 Sum_probs=24.9
Q ss_pred cCCCcEEEEE-echhHHHHHHHHHHHHhCCCcEEEEEecc
Q psy7291 74 VTGKDITIVG-HSKAVETALDAAKILAGQGIDAEVINLRS 112 (158)
Q Consensus 74 ~~g~~~~ii~-~G~~~~~a~ea~~~L~~~gi~~~vi~~~~ 112 (158)
..|.+++||+ .|.|... .+..|.++|..+++++-++
T Consensus 156 ~~Gk~V~viGrs~~mG~P---mA~~L~~~g~tVtv~~~rT 192 (296)
T PRK14188 156 LSGLNAVVIGRSNLVGKP---MAQLLLAANATVTIAHSRT 192 (296)
T ss_pred CCCCEEEEEcCCcchHHH---HHHHHHhCCCEEEEECCCC
Confidence 4589999998 4444433 2456777799999887555
No 411
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=26.11 E-value=1.9e+02 Score=18.78 Aligned_cols=48 Identities=25% Similarity=0.340 Sum_probs=33.5
Q ss_pred CCcEEEEEechhHHHHHHHHH-HHHhCCCcEEEEEeccccCCCHHHHHHHH
Q psy7291 76 GKDITIVGHSKAVETALDAAK-ILAGQGIDAEVINLRSLRPLDIETITKSV 125 (158)
Q Consensus 76 g~~~~ii~~G~~~~~a~ea~~-~L~~~gi~~~vi~~~~l~Pld~~~l~~~~ 125 (158)
+.|++++ ++.+....+-++ .+...++.+.+|+.....++|-+.+.+.+
T Consensus 46 ~~Diil~--~Pqv~~~~~~i~~~~~~~~~pv~~I~~~~Y~~~dg~~il~~~ 94 (96)
T cd05564 46 DADVVLL--GPQVRYMLDEVKKKAAEYGIPVAVIDMMDYGMMNGEKVLKQA 94 (96)
T ss_pred CCCEEEE--ChhHHHHHHHHHHHhccCCCcEEEcChHhcccCCHHHHHHHH
Confidence 4565544 555555444444 34556899999999999999998876654
No 412
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=26.03 E-value=1.5e+02 Score=23.07 Aligned_cols=26 Identities=15% Similarity=0.040 Sum_probs=17.7
Q ss_pred chhHHHHHHHHHHHHhCCCcEEEEEe
Q psy7291 85 SKAVETALDAAKILAGQGIDAEVINL 110 (158)
Q Consensus 85 G~~~~~a~ea~~~L~~~gi~~~vi~~ 110 (158)
|.+-..+.+.++.|.+.|+++.|+..
T Consensus 15 gG~~~~~~~la~~L~~~g~~v~v~~~ 40 (363)
T cd04955 15 GGFETFVEELAPRLVARGHEVTVYCR 40 (363)
T ss_pred CcHHHHHHHHHHHHHhcCCCEEEEEc
Confidence 55556666777777777777777744
No 413
>PRK09213 pur operon repressor; Provisional
Probab=25.99 E-value=93 Score=24.77 Aligned_cols=33 Identities=12% Similarity=0.064 Sum_probs=28.5
Q ss_pred HHhCCCeEEEEeCCcCCCChHHHHHHHHHcCCC
Q psy7291 124 SVMKTNYLISVEGGWPQCGIGSEISARIMEIPY 156 (158)
Q Consensus 124 ~~~~~~~vvvvEe~~~~GG~g~~i~~~l~~~~~ 156 (158)
.++..++|++||+-...||--..+.+.+.+.|.
T Consensus 192 ~l~~G~rVLIVDDv~~TGgTi~a~i~Ll~e~Ga 224 (271)
T PRK09213 192 SLKEGSRVLIVDDFMKAGGTINGMISLLKEFDA 224 (271)
T ss_pred hcCCcCEEEEEeeecccCHhHHHHHHHHHHCCC
Confidence 566778999999999999998889988888764
No 414
>PRK14938 Ser-tRNA(Thr) hydrolase; Provisional
Probab=25.97 E-value=3.6e+02 Score=22.78 Aligned_cols=60 Identities=17% Similarity=0.158 Sum_probs=39.1
Q ss_pred CCcEEEEEechh-HHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHH-hCCCeEEEEeCCc
Q psy7291 76 GKDITIVGHSKA-VETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSV-MKTNYLISVEGGW 138 (158)
Q Consensus 76 g~~~~ii~~G~~-~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~-~~~~~vvvvEe~~ 138 (158)
..++.|+..+.. ...+++.+..|+++|+.+.+- ... ..+..+ ++.+- .+...++++.+..
T Consensus 274 P~qV~IIpl~eel~e~AlkLA~eLR~aGIrVeiD-l~s-rSLgKQ-iK~AdK~GaPfvIIIGedE 335 (387)
T PRK14938 274 PIQVRILPVKKDFLDFSIQVAERLRKEGIRVNVD-DLD-DSLGNK-IRRAGTEWIPFVIIIGERE 335 (387)
T ss_pred cceEEEEEeChHHHHHHHHHHHHHHHCCCEEEEE-CCC-CCHHHH-HHHHHHcCCCEEEEECchh
Confidence 467888888763 367888889999999887663 332 444443 44432 3567777776543
No 415
>TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase.
Probab=25.89 E-value=3.6e+02 Score=21.79 Aligned_cols=58 Identities=10% Similarity=0.085 Sum_probs=33.6
Q ss_pred HhCCCcEEEEEecc-ccCCCHHHHHHHHhCCCeEEEEeC-CcCCCChH--HHHHHHHHcCCC
Q psy7291 99 AGQGIDAEVINLRS-LRPLDIETITKSVMKTNYLISVEG-GWPQCGIG--SEISARIMEIPY 156 (158)
Q Consensus 99 ~~~gi~~~vi~~~~-l~Pld~~~l~~~~~~~~~vvvvEe-~~~~GG~g--~~i~~~l~~~~~ 156 (158)
+..|.++..+.+.. -..++.+.+.+.+....+++++.. ++..|..- .+|++.+.++|.
T Consensus 126 ~~~g~~~~~~~~~~~~~~~~~~~l~~~i~~~~~lv~i~~~~n~tG~~~~~~~i~~~~~~~~~ 187 (397)
T TIGR01976 126 ERAGAKVKWARVDEATGELHPDDLASLLSPRTRLVAVTAASNTLGSIVDLAAITELVHAAGA 187 (397)
T ss_pred HhcCCEEEEEeccccCCCcCHHHHHHhcCCCceEEEEeCCCCCCCccCCHHHHHHHHHHcCC
Confidence 34476666665432 134666777777764445666664 45556543 567777766653
No 416
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=25.82 E-value=3.2e+02 Score=21.51 Aligned_cols=78 Identities=17% Similarity=0.048 Sum_probs=46.5
Q ss_pred CCcEEEEEech-hHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHH----HHhCC--CeEEEEeCCcCCC-ChHHHH
Q psy7291 76 GKDITIVGHSK-AVETALDAAKILAGQGIDAEVINLRSLRPLDIETITK----SVMKT--NYLISVEGGWPQC-GIGSEI 147 (158)
Q Consensus 76 g~~~~ii~~G~-~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~----~~~~~--~~vvvvEe~~~~G-G~g~~i 147 (158)
|.--+|++.|. .+..+.+.++..++.|.+.-++-.+...+.+++.+.+ +++.. -.|++...-...| .+..++
T Consensus 69 ~~~~viagv~~~~~~~ai~~a~~a~~~Gad~v~~~~P~y~~~~~~~i~~~~~~v~~a~~~lpi~iYn~P~~tg~~l~~~~ 148 (288)
T cd00954 69 GKVTLIAHVGSLNLKESQELAKHAEELGYDAISAITPFYYKFSFEEIKDYYREIIAAAASLPMIIYHIPALTGVNLTLEQ 148 (288)
T ss_pred CCCeEEeccCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCCEEEEeCccccCCCCCHHH
Confidence 33345566764 5677777777788888888777677666666655443 34444 2566665433233 345555
Q ss_pred HHHHHc
Q psy7291 148 SARIME 153 (158)
Q Consensus 148 ~~~l~~ 153 (158)
...|.+
T Consensus 149 ~~~L~~ 154 (288)
T cd00954 149 FLELFE 154 (288)
T ss_pred HHHHhc
Confidence 555554
No 417
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=25.74 E-value=1e+02 Score=28.99 Aligned_cols=33 Identities=24% Similarity=0.283 Sum_probs=26.2
Q ss_pred CCCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEe
Q psy7291 75 TGKDITIVGHSKAVETALDAAKILAGQGIDAEVINL 110 (158)
Q Consensus 75 ~g~~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~ 110 (158)
.|++++||+.|+..-. |+..|...|++++|++-
T Consensus 305 ~gkkVaVIGsGPAGLs---aA~~Lar~G~~VtVfE~ 337 (944)
T PRK12779 305 VKPPIAVVGSGPSGLI---NAYLLAVEGFPVTVFEA 337 (944)
T ss_pred CCCeEEEECCCHHHHH---HHHHHHHCCCeEEEEee
Confidence 3789999999975443 46678888999999975
No 418
>KOG1549|consensus
Probab=25.72 E-value=2e+02 Score=24.57 Aligned_cols=59 Identities=15% Similarity=0.294 Sum_probs=43.4
Q ss_pred cEEEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhCCCeEEEEeC
Q psy7291 78 DITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKTNYLISVEG 136 (158)
Q Consensus 78 ~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~~~vvvvEe 136 (158)
+..||++-..-.-++++++-|+++|..++.+-+.--.=.|.+.+++.++..-+++.+.-
T Consensus 131 ~k~iitl~~eH~~v~~s~~~l~~~g~~Vt~lpv~~~~~~d~~~~~~~i~~~T~lv~I~~ 189 (428)
T KOG1549|consen 131 KKHIITLQTEHPCVLDSCRALQEEGLEVTYLPVEDSGLVDISKLREAIRSKTRLVSIMH 189 (428)
T ss_pred cceEEEecccCcchhHHHHHHHhcCeEEEEeccCccccccHHHHHHhcCCCceEEEEEe
Confidence 33777777666777888888999997666665554455667788899987767777765
No 419
>PF04414 tRNA_deacylase: D-aminoacyl-tRNA deacylase; InterPro: IPR007508 D-aminoacyl-tRNA deacylases hydrolyse the ester bond between the polynucleotide and the D-amino acid, thereby preventing the accumulation of such mis-acylated and metabolically inactive tRNA molecules. Several aminoacyl-tRNA synthetases have the ability to transfer the D-isomer of their amino acid onto their cognate tRNA. ; GO: 0016788 hydrolase activity, acting on ester bonds; PDB: 1YQE_A 2GFQ_B.
Probab=25.70 E-value=3.1e+02 Score=21.02 Aligned_cols=77 Identities=13% Similarity=0.085 Sum_probs=49.3
Q ss_pred EEEEEechhHHHHHHHHHHHHhCCCcEEEEEec-cccCCCHHHHHHHHhCCC-eEEEEeCCcCCCChHHHHHHHHHcCCC
Q psy7291 79 ITIVGHSKAVETALDAAKILAGQGIDAEVINLR-SLRPLDIETITKSVMKTN-YLISVEGGWPQCGIGSEISARIMEIPY 156 (158)
Q Consensus 79 ~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~-~l~Pld~~~l~~~~~~~~-~vvvvEe~~~~GG~g~~i~~~l~~~~~ 156 (158)
..+|+.|.. +++-.-.+.+.+.+..++.|-.. ++..++.+.|.+.+++.+ ..+++|.-...++.=..|.+++.+.|+
T Consensus 131 ~~~ig~GG~-HYapr~t~~~l~~~~~~GHi~~ky~l~~l~~~~l~~a~~~s~~~~a~id~K~l~~~~r~~i~~~l~~~gi 209 (213)
T PF04414_consen 131 PVAIGFGGG-HYAPRFTKLALETEYAFGHIIPKYALDELDEDVLRQAIEKSGADVAIIDWKSLKSEDRRRIEELLEELGI 209 (213)
T ss_dssp EEEEEE-S--TT-HHHHHHHHHCSEEEEEEE-GGGGGG--HHHHHHHHCHCT-SEEEEETTTS-HHHHHHHHHHHHHHT-
T ss_pred ceeEEecCc-ccchhhhhhhhcCCeEEEeeccCcchhhcCHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHHHHHcCC
Confidence 777888753 44444445555556777666444 456688999999888654 568888777778888899999888776
No 420
>PRK14650 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=25.70 E-value=81 Score=25.52 Aligned_cols=26 Identities=31% Similarity=0.497 Sum_probs=22.6
Q ss_pred cccCCHHHHHHHHHHHHhCCCcEEEE
Q psy7291 2 VSPYNSEDAKGLLKAAIRDPDPVVFL 27 (158)
Q Consensus 2 ~~P~d~~e~~~~l~~a~~~~~P~~iR 27 (158)
+.|.|.+|+.++++++.+.+.|++|.
T Consensus 37 ~~p~~~~eL~~~l~~~~~~~~p~~vl 62 (302)
T PRK14650 37 LTPKTIKDAEHIFKAAIEEKIKIFIL 62 (302)
T ss_pred EecCCHHHHHHHHHHHHHcCCCEEEE
Confidence 57999999999999988877888874
No 421
>PRK12831 putative oxidoreductase; Provisional
Probab=25.66 E-value=1.2e+02 Score=25.88 Aligned_cols=32 Identities=28% Similarity=0.412 Sum_probs=24.5
Q ss_pred CCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEe
Q psy7291 76 GKDITIVGHSKAVETALDAAKILAGQGIDAEVINL 110 (158)
Q Consensus 76 g~~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~ 110 (158)
+.+++||+.|+..- .|+..|.+.|.++.|++-
T Consensus 140 ~~~V~IIG~GpAGl---~aA~~l~~~G~~V~v~e~ 171 (464)
T PRK12831 140 GKKVAVIGSGPAGL---TCAGDLAKMGYDVTIFEA 171 (464)
T ss_pred CCEEEEECcCHHHH---HHHHHHHhCCCeEEEEec
Confidence 78999999996543 345667777999999974
No 422
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=25.65 E-value=2.4e+02 Score=23.71 Aligned_cols=41 Identities=29% Similarity=0.435 Sum_probs=30.0
Q ss_pred CCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEec--cccCCCHH
Q psy7291 76 GKDITIVGHSKAVETALDAAKILAGQGIDAEVINLR--SLRPLDIE 119 (158)
Q Consensus 76 g~~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~--~l~Pld~~ 119 (158)
+++++||+-|.. ++|.+..|...|.+++++... .+..+|.+
T Consensus 166 ~~~vvIIGgG~i---G~E~A~~l~~~g~~Vtli~~~~~il~~~d~~ 208 (450)
T TIGR01421 166 PKRVVIVGAGYI---AVELAGVLHGLGSETHLVIRHERVLRSFDSM 208 (450)
T ss_pred CCeEEEECCCHH---HHHHHHHHHHcCCcEEEEecCCCCCcccCHH
Confidence 468999988854 556677777789999999743 45667764
No 423
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=25.62 E-value=1.6e+02 Score=21.78 Aligned_cols=37 Identities=11% Similarity=0.249 Sum_probs=26.1
Q ss_pred EEEEEech-hHHHHHHHHHHHHhCCCcEEEEE----eccccC
Q psy7291 79 ITIVGHSK-AVETALDAAKILAGQGIDAEVIN----LRSLRP 115 (158)
Q Consensus 79 ~~ii~~G~-~~~~a~ea~~~L~~~gi~~~vi~----~~~l~P 115 (158)
+++.-+|+ .+..+.+.++.|.+.|.++.++- .+++.|
T Consensus 2 illgvtGsiaa~ka~~lir~L~~~g~~V~vv~T~~A~~fv~~ 43 (181)
T TIGR00421 2 IVVAMTGASGVIYGIRLLEVLKEAGVEVHLVISDWAKETIKY 43 (181)
T ss_pred EEEEEECHHHHHHHHHHHHHHHHCCCEEEEEECccHHHHHHH
Confidence 45555665 55678888999999898888872 345554
No 424
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=25.61 E-value=3.8e+02 Score=22.08 Aligned_cols=41 Identities=5% Similarity=-0.085 Sum_probs=21.6
Q ss_pred cccCCCHHHHHHHHhCCCeEEEEeCCcC---CCChHHHHHHHHH
Q psy7291 112 SLRPLDIETITKSVMKTNYLISVEGGWP---QCGIGSEISARIM 152 (158)
Q Consensus 112 ~l~Pld~~~l~~~~~~~~~vvvvEe~~~---~GG~g~~i~~~l~ 152 (158)
++-.++.+.+.++++..+..+.---... .-|++..+.++|+
T Consensus 283 ~~G~~~~~el~~~l~~aDv~v~pS~~~~~g~~Eg~p~~llEAma 326 (406)
T PRK15427 283 MPGFKPSHEVKAMLDDADVFLLPSVTGADGDMEGIPVALMEAMA 326 (406)
T ss_pred EeCCCCHHHHHHHHHhCCEEEECCccCCCCCccCccHHHHHHHh
Confidence 3445666677777776653332111100 1366766766665
No 425
>PRK12452 cardiolipin synthetase; Reviewed
Probab=25.61 E-value=3.9e+02 Score=23.15 Aligned_cols=19 Identities=16% Similarity=0.268 Sum_probs=14.4
Q ss_pred hCCCeEEEEeCCc-CCCChH
Q psy7291 126 MKTNYLISVEGGW-PQCGIG 144 (158)
Q Consensus 126 ~~~~~vvvvEe~~-~~GG~g 144 (158)
..|.+++++|... -.||+.
T Consensus 241 RnHRKi~VIDg~ia~~GG~N 260 (509)
T PRK12452 241 RNHRKIVIVDGEIGFTGGLN 260 (509)
T ss_pred CCCCeEEEEcCCEEEeCCcc
Confidence 4788999999865 477763
No 426
>PRK13809 orotate phosphoribosyltransferase; Provisional
Probab=25.56 E-value=2.4e+02 Score=21.38 Aligned_cols=32 Identities=6% Similarity=-0.122 Sum_probs=27.5
Q ss_pred HhCCCeEEEEeCCcCCCChHHHHHHHHHcCCC
Q psy7291 125 VMKTNYLISVEGGWPQCGIGSEISARIMEIPY 156 (158)
Q Consensus 125 ~~~~~~vvvvEe~~~~GG~g~~i~~~l~~~~~ 156 (158)
+...++|++||+-..+||--.+.++.|.+.|.
T Consensus 115 ~~~g~~VlIVDDViTTG~Ti~~a~~~L~~~G~ 146 (206)
T PRK13809 115 FTPGQTCLVINDMVSSGKSIIETAVALEEEGL 146 (206)
T ss_pred cCCCCEEEEEEeccccCHHHHHHHHHHHHCCC
Confidence 45668999999999999988888999988875
No 427
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=25.54 E-value=99 Score=22.20 Aligned_cols=33 Identities=24% Similarity=0.313 Sum_probs=23.1
Q ss_pred CCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEec
Q psy7291 76 GKDITIVGHSKAVETALDAAKILAGQGIDAEVINLR 111 (158)
Q Consensus 76 g~~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~ 111 (158)
...++|++.|.....|.+++..| |.++.+++.+
T Consensus 20 p~~vvv~G~G~vg~gA~~~~~~l---Ga~v~~~d~~ 52 (168)
T PF01262_consen 20 PAKVVVTGAGRVGQGAAEIAKGL---GAEVVVPDER 52 (168)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHT---T-EEEEEESS
T ss_pred CeEEEEECCCHHHHHHHHHHhHC---CCEEEeccCC
Confidence 46899999998888877666654 7777777653
No 428
>PRK10897 phosphohistidinoprotein-hexose phosphotransferase component of N-regulated PTS system (Npr); Provisional
Probab=25.45 E-value=1.4e+02 Score=19.42 Aligned_cols=27 Identities=30% Similarity=0.388 Sum_probs=22.8
Q ss_pred CCcEEEEEechhHHHHHHHHHHHHhCC
Q psy7291 76 GKDITIVGHSKAVETALDAAKILAGQG 102 (158)
Q Consensus 76 g~~~~ii~~G~~~~~a~ea~~~L~~~g 102 (158)
|.++.|.+.|..-..|++++..+-+.+
T Consensus 60 G~~i~v~~~G~De~~A~~~l~~~~~~~ 86 (90)
T PRK10897 60 GRQIEVEATGPQEEEALAAVIALFNSG 86 (90)
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHhc
Confidence 889999999999999999888775543
No 429
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=25.39 E-value=2.6e+02 Score=21.24 Aligned_cols=58 Identities=22% Similarity=0.412 Sum_probs=36.5
Q ss_pred cCCCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCC--------------C-HHHHHHHHhCCCeEEE
Q psy7291 74 VTGKDITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPL--------------D-IETITKSVMKTNYLIS 133 (158)
Q Consensus 74 ~~g~~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pl--------------d-~~~l~~~~~~~~~vvv 133 (158)
..|++++||+-+..+..=+. -.|.++|..+++.|...++=| | ++.+.+.++..+-|++
T Consensus 60 l~GK~vvVIGrS~iVGkPla--~lL~~~~AtVti~~~~~~~~~~~~~~~~hs~t~~~~~~~~l~~~~~~ADIVIs 132 (197)
T cd01079 60 LYGKTITIINRSEVVGRPLA--ALLANDGARVYSVDINGIQVFTRGESIRHEKHHVTDEEAMTLDCLSQSDVVIT 132 (197)
T ss_pred CCCCEEEEECCCccchHHHH--HHHHHCCCEEEEEecCcccccccccccccccccccchhhHHHHHhhhCCEEEE
Confidence 34899999999888876653 356667877877753222211 2 2236677777764444
No 430
>cd03371 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, PpyrDC subfamily, TPP-binding module; composed of proteins similar to phosphonopyruvate decarboxylase (PpyrDC) proteins. PpyrDC is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. These proteins require TPP and divalent metal cation cofactors.
Probab=25.38 E-value=97 Score=22.89 Aligned_cols=24 Identities=17% Similarity=0.134 Sum_probs=21.4
Q ss_pred cCCHHHHHHHHHHHHhCCCcEEEE
Q psy7291 4 PYNSEDAKGLLKAAIRDPDPVVFL 27 (158)
Q Consensus 4 P~d~~e~~~~l~~a~~~~~P~~iR 27 (158)
..+..|+.+.++++++.++|++|.
T Consensus 136 v~~~~el~~al~~a~~~~~p~lIe 159 (188)
T cd03371 136 VPSLEELVAALAKALAADGPAFIE 159 (188)
T ss_pred cCCHHHHHHHHHHHHhCCCCEEEE
Confidence 468999999999999888999985
No 431
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=25.34 E-value=3e+02 Score=20.70 Aligned_cols=37 Identities=11% Similarity=0.021 Sum_probs=21.2
Q ss_pred ccCCCHHHHHHHHhCCCeEEEEeCCcCCCChHHHHHHHHH
Q psy7291 113 LRPLDIETITKSVMKTNYLISVEGGWPQCGIGSEISARIM 152 (158)
Q Consensus 113 l~Pld~~~l~~~~~~~~~vvvvEe~~~~GG~g~~i~~~l~ 152 (158)
+.+++.+.+.++++..+-++..-.. .|++..+.++++
T Consensus 261 ~g~~~~~~~~~~~~~~di~i~~~~~---~~~~~~~~Ea~~ 297 (374)
T cd03801 261 LGFVPDEDLPALYAAADVFVLPSLY---EGFGLVLLEAMA 297 (374)
T ss_pred EeccChhhHHHHHHhcCEEEecchh---ccccchHHHHHH
Confidence 3455556677777776544433222 566666666664
No 432
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=25.34 E-value=1e+02 Score=24.82 Aligned_cols=31 Identities=29% Similarity=0.329 Sum_probs=22.7
Q ss_pred cEEEEEechhHHHHHHHHHHHHhCC-CcEEEEEec
Q psy7291 78 DITIVGHSKAVETALDAAKILAGQG-IDAEVINLR 111 (158)
Q Consensus 78 ~~~ii~~G~~~~~a~ea~~~L~~~g-i~~~vi~~~ 111 (158)
|++||+-|..... ++-.|.+.| +++.|++-.
T Consensus 1 dv~IvGaG~aGl~---~A~~L~~~G~~~v~v~E~~ 32 (382)
T TIGR01984 1 DVIIVGGGLVGLS---LALALSRLGKIKIALIEAN 32 (382)
T ss_pred CEEEECccHHHHH---HHHHHhcCCCceEEEEeCC
Confidence 5888988875544 344677889 999999754
No 433
>COG3547 Transposase and inactivated derivatives [DNA replication, recombination, and repair]
Probab=25.26 E-value=64 Score=25.18 Aligned_cols=35 Identities=26% Similarity=0.383 Sum_probs=29.8
Q ss_pred EEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccC
Q psy7291 80 TIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRP 115 (158)
Q Consensus 80 ~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~P 115 (158)
++|+.-++ .......+.|.+.|+++.+++++.+++
T Consensus 37 ~~v~~Ea~-~~~~~~~~~l~~~g~~v~~i~p~~v~~ 71 (303)
T COG3547 37 CIVGIEAT-GYSENLARYLRAEGYPVRLINPRQVKK 71 (303)
T ss_pred cEEEEcCC-chHHHHHHHHHHcCCeeEEECHHHhHH
Confidence 67777777 777778889999999999999988876
No 434
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=25.21 E-value=1.3e+02 Score=22.57 Aligned_cols=37 Identities=22% Similarity=0.309 Sum_probs=27.3
Q ss_pred CCcEEEEEechhHHHHHHHHHHHHhCCC-cEEEEEeccccC
Q psy7291 76 GKDITIVGHSKAVETALDAAKILAGQGI-DAEVINLRSLRP 115 (158)
Q Consensus 76 g~~~~ii~~G~~~~~a~ea~~~L~~~gi-~~~vi~~~~l~P 115 (158)
..+++|++.|.+...+ +..|...|+ ++.++|...+.+
T Consensus 21 ~~~V~IvG~GglGs~i---a~~La~~Gvg~i~lvD~D~ve~ 58 (200)
T TIGR02354 21 QATVAICGLGGLGSNV---AINLARAGIGKLILVDFDVVEP 58 (200)
T ss_pred CCcEEEECcCHHHHHH---HHHHHHcCCCEEEEECCCEEcc
Confidence 5789999999988775 445556688 488888774433
No 435
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=25.09 E-value=1.5e+02 Score=21.21 Aligned_cols=40 Identities=20% Similarity=0.198 Sum_probs=27.4
Q ss_pred CcEE-EEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCC
Q psy7291 77 KDIT-IVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPL 116 (158)
Q Consensus 77 ~~~~-ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pl 116 (158)
.|++ +++.........++++.+++.|.++-.|.-..-.|+
T Consensus 73 ~Dv~I~iS~sG~t~~~i~~~~~ak~~g~~ii~IT~~~~s~l 113 (179)
T TIGR03127 73 GDLLIAISGSGETESLVTVAKKAKEIGATVAAITTNPESTL 113 (179)
T ss_pred CCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEECCCCCch
Confidence 4444 466666778889999999999877665544444454
No 436
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=25.06 E-value=1.7e+02 Score=24.56 Aligned_cols=33 Identities=27% Similarity=0.339 Sum_probs=26.3
Q ss_pred CCcEEEEEechhH-HHHHHHHHHHHhCCCcEEEE
Q psy7291 76 GKDITIVGHSKAV-ETALDAAKILAGQGIDAEVI 108 (158)
Q Consensus 76 g~~~~ii~~G~~~-~~a~ea~~~L~~~gi~~~vi 108 (158)
+.++++.-+|+.. ..+.+.++.|.+.|.++.|+
T Consensus 6 ~k~IllgvTGsiaa~k~~~lv~~L~~~g~~V~vv 39 (399)
T PRK05579 6 GKRIVLGVSGGIAAYKALELVRRLRKAGADVRVV 39 (399)
T ss_pred CCeEEEEEeCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 6789998888854 45677788898889888887
No 437
>PHA03050 glutaredoxin; Provisional
Probab=25.06 E-value=2.2e+02 Score=19.05 Aligned_cols=68 Identities=15% Similarity=0.126 Sum_probs=41.4
Q ss_pred CCcEEEEEechhHHHHHHHHHHHHhCCC---cEEEEEeccccCCCH---HHHHHHHhC-CCeEEEEeCCcCCCChHHH
Q psy7291 76 GKDITIVGHSKAVETALDAAKILAGQGI---DAEVINLRSLRPLDI---ETITKSVMK-TNYLISVEGGWPQCGIGSE 146 (158)
Q Consensus 76 g~~~~ii~~G~~~~~a~ea~~~L~~~gi---~~~vi~~~~l~Pld~---~~l~~~~~~-~~~vvvvEe~~~~GG~g~~ 146 (158)
..+++|.+. +.+..+..|.+.|++.|+ .+.++++.-..+ +. +.+.+.-.. +=..+++.... .||+...
T Consensus 12 ~~~V~vys~-~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~-~~~~~~~l~~~tG~~tVP~IfI~g~~-iGG~ddl 86 (108)
T PHA03050 12 NNKVTIFVK-FTCPFCRNALDILNKFSFKRGAYEIVDIKEFKP-ENELRDYFEQITGGRTVPRIFFGKTS-IGGYSDL 86 (108)
T ss_pred cCCEEEEEC-CCChHHHHHHHHHHHcCCCcCCcEEEECCCCCC-CHHHHHHHHHHcCCCCcCEEEECCEE-EeChHHH
Confidence 456777766 457788888888888888 788888874222 22 223333221 22455666444 6898543
No 438
>PRK12325 prolyl-tRNA synthetase; Provisional
Probab=25.05 E-value=4.1e+02 Score=22.46 Aligned_cols=59 Identities=12% Similarity=0.077 Sum_probs=40.3
Q ss_pred CcEEEEEec----hhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHH-HHhCCCeEEEEeCCc
Q psy7291 77 KDITIVGHS----KAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITK-SVMKTNYLISVEGGW 138 (158)
Q Consensus 77 ~~~~ii~~G----~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~-~~~~~~~vvvvEe~~ 138 (158)
.++.||..+ .....+.+..+.|++.|+.+.+ |.+. ..+..+ +++ -..+...+++|-+..
T Consensus 346 ~qV~Iipi~~~~~~~~~~a~~i~~~L~~~Gi~v~~-D~~~-~~lg~k-i~~a~~~giP~~iiVG~~e 409 (439)
T PRK12325 346 FKVGIINLKQGDEACDAACEKLYAALSAAGIDVLY-DDTD-ERPGAK-FATMDLIGLPWQIIVGPKG 409 (439)
T ss_pred eEEEEEecCCCCHHHHHHHHHHHHHHHHCCCEEEE-ECCC-CCHhHH-HHHHHHcCCCEEEEECCcc
Confidence 578888873 2456788888899999998775 5554 455554 444 345778888886554
No 439
>TIGR01677 pln_FAD_oxido plant-specific FAD-dependent oxidoreductase. This model represents an uncharacterized plant-specific family of FAD-dependent oxidoreductases. At least seven distinct members are found in Arabidopsis thaliana. The family shows considerable sequence similarity to three different enzymes of ascorbic acid biosynthesis: L-galactono-1,4-lactone dehydrogenase (EC 1.3.2.3) from higher plants, D-arabinono-1,4-lactone oxidase (EC 1.1.3.37 from Saccharomyces cerevisiae, and L-gulonolactone oxidase (EC 1.1.3.8) from mouse, as well as to a bacterial sorbitol oxidase. The class of compound acted on by members of this family is unknown.
Probab=25.03 E-value=86 Score=27.63 Aligned_cols=27 Identities=15% Similarity=0.172 Sum_probs=24.4
Q ss_pred CcccCCHHHHHHHHHHHHhCCCcEEEE
Q psy7291 1 VVSPYNSEDAKGLLKAAIRDPDPVVFL 27 (158)
Q Consensus 1 V~~P~d~~e~~~~l~~a~~~~~P~~iR 27 (158)
|+.|.+.+|+.+++++|.+++.|+.++
T Consensus 35 vv~P~s~eeV~~iV~~A~~~g~~v~v~ 61 (557)
T TIGR01677 35 VAYPKTEAELVSVVAAATAAGRKMKVV 61 (557)
T ss_pred EEecCCHHHHHHHHHHHHHCCCeEEEE
Confidence 468999999999999999988898886
No 440
>PRK14653 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=25.00 E-value=84 Score=25.30 Aligned_cols=26 Identities=12% Similarity=0.026 Sum_probs=23.0
Q ss_pred CcccCCHHHHHHHHHHHHhCCCcEEEE
Q psy7291 1 VVSPYNSEDAKGLLKAAIRDPDPVVFL 27 (158)
Q Consensus 1 V~~P~d~~e~~~~l~~a~~~~~P~~iR 27 (158)
++.|.+.+|+.++++++.+ +.|++++
T Consensus 37 ~v~p~s~eel~~~~~~~~~-~~p~~vl 62 (297)
T PRK14653 37 FAIPNSTNGFIETINLLKE-GIEVKIL 62 (297)
T ss_pred EEecCCHHHHHHHHHHHhc-CCCEEEE
Confidence 3679999999999999888 8899985
No 441
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=24.94 E-value=1.1e+02 Score=24.56 Aligned_cols=32 Identities=31% Similarity=0.351 Sum_probs=22.4
Q ss_pred cEEEEEechhHHHHHHHHHHHHhCCCcEEEEEecc
Q psy7291 78 DITIVGHSKAVETALDAAKILAGQGIDAEVINLRS 112 (158)
Q Consensus 78 ~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~ 112 (158)
|++||+-|..... ++-.|.++|+++.|+.-..
T Consensus 1 dViIvGaG~aGl~---~A~~L~~~G~~v~v~Er~~ 32 (385)
T TIGR01988 1 DIVIVGGGMVGLA---LALALARSGLKIALIEATP 32 (385)
T ss_pred CEEEECCCHHHHH---HHHHHhcCCCEEEEEeCCC
Confidence 5888888864433 2346777899999986664
No 442
>COG1799 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.91 E-value=1.4e+02 Score=22.12 Aligned_cols=47 Identities=23% Similarity=0.320 Sum_probs=37.7
Q ss_pred EEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhCC
Q psy7291 80 TIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKT 128 (158)
Q Consensus 80 ~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~ 128 (158)
+++-.=..+..|.++++.|++. ++-+||+..+-|-..+-+.+++.+.
T Consensus 76 iv~~ePr~yeda~~ia~~lk~~--k~Vvinl~~m~~~qArRivDFlaG~ 122 (167)
T COG1799 76 IVLLEPRKYEDAQEIADYLKNR--KAVVINLQRMDPAQARRIVDFLAGA 122 (167)
T ss_pred EEEecCccHHHHHHHHHHHhcC--ceEEEEeeeCCHHHHHHHHHHhcch
Confidence 3344556789999999999875 6889999999998888888888754
No 443
>TIGR01931 cysJ sulfite reductase [NADPH] flavoprotein, alpha-component. This model describes an NADPH-dependent sulfite reductase flavoprotein subunit. Most members of this family are found in Cys biosynthesis gene clusters. The closest homologs below the trusted cutoff are designated as subunits nitrate reductase.
Probab=24.88 E-value=1.6e+02 Score=26.09 Aligned_cols=58 Identities=14% Similarity=0.073 Sum_probs=35.4
Q ss_pred cEEEEEechhHHHHHHHHHHH----HhCCCcEEEEEeccccCCCHHHHHHHHhCCCeEEEEeCCcCCCC
Q psy7291 78 DITIVGHSKAVETALDAAKIL----AGQGIDAEVINLRSLRPLDIETITKSVMKTNYLISVEGGWPQCG 142 (158)
Q Consensus 78 ~~~ii~~G~~~~~a~ea~~~L----~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~~~vvvvEe~~~~GG 142 (158)
+-+.|-|||.+..+...++.| +..|+.+.+.++..+.+ .+ +.+.+.++++=..+-.|-
T Consensus 59 ~~i~IlygSqTGnae~~A~~l~~~l~~~g~~~~v~~~~d~~~------~~-l~~~~~li~v~ST~GeGe 120 (597)
T TIGR01931 59 KRVTILYGSQTGNARRLAKRLAEKLEAAGFSVRLSSADDYKF------KQ-LKKERLLLLVISTQGEGE 120 (597)
T ss_pred CeEEEEEECCchHHHHHHHHHHHHHHhCCCccEEechHHCCH------hh-cccCceEEEEeCCCCCCc
Confidence 345667999888887776554 55688888877665432 12 334455666555543443
No 444
>TIGR00824 EIIA-man PTS system, mannose/fructose/sorbose family, IIA component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIA components.
Probab=24.88 E-value=2.3e+02 Score=19.15 Aligned_cols=70 Identities=16% Similarity=0.213 Sum_probs=41.0
Q ss_pred cEEEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCH--HHHHHHHhC---CCeEEEEeCCcCCCChHHHHHH
Q psy7291 78 DITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDI--ETITKSVMK---TNYLISVEGGWPQCGIGSEISA 149 (158)
Q Consensus 78 ~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~--~~l~~~~~~---~~~vvvvEe~~~~GG~g~~i~~ 149 (158)
.++|+|.|..+.-.+++++.+--+.-++..+++..=...+. +.+.+.++. .+.|+++=+-. ||--..++.
T Consensus 3 ~ili~sHG~~A~gl~~s~~~i~G~~~~i~~i~~~~~~~~~~~~~~l~~~i~~~~~~~~vivltDl~--GGSp~n~a~ 77 (116)
T TIGR00824 3 AIIISGHGQAAIALLKSAEMIFGEQNNVGAVPFVPGENAETLQEKYNAALADLDTEEEVLFLVDIF--GGSPYNAAA 77 (116)
T ss_pred EEEEEecHHHHHHHHHHHHHHcCCcCCeEEEEcCCCcCHHHHHHHHHHHHHhcCCCCCEEEEEeCC--CCCHHHHHH
Confidence 48999999999999999998754334566666443222211 234444543 24566655443 565444443
No 445
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=24.88 E-value=1.4e+02 Score=26.66 Aligned_cols=33 Identities=15% Similarity=0.354 Sum_probs=26.5
Q ss_pred CCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEec
Q psy7291 76 GKDITIVGHSKAVETALDAAKILAGQGIDAEVINLR 111 (158)
Q Consensus 76 g~~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~ 111 (158)
.+.++|+++|.....+ ++.|.++|+++.++|..
T Consensus 400 ~~~vII~G~Gr~G~~v---a~~L~~~g~~vvvID~d 432 (621)
T PRK03562 400 QPRVIIAGFGRFGQIV---GRLLLSSGVKMTVLDHD 432 (621)
T ss_pred cCcEEEEecChHHHHH---HHHHHhCCCCEEEEECC
Confidence 4679999999988764 66788889999998654
No 446
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=24.87 E-value=1.3e+02 Score=25.49 Aligned_cols=33 Identities=21% Similarity=0.229 Sum_probs=25.0
Q ss_pred CCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEec
Q psy7291 76 GKDITIVGHSKAVETALDAAKILAGQGIDAEVINLR 111 (158)
Q Consensus 76 g~~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~ 111 (158)
+.+++||+.|...-. +++.|.+.|.++.+++.+
T Consensus 16 ~~~v~viG~G~~G~~---~A~~L~~~G~~V~~~d~~ 48 (480)
T PRK01438 16 GLRVVVAGLGVSGFA---AADALLELGARVTVVDDG 48 (480)
T ss_pred CCEEEEECCCHHHHH---HHHHHHHCCCEEEEEeCC
Confidence 567999998875443 566777889999998765
No 447
>cd03377 TPP_PFOR_PNO Thiamine pyrophosphate (TPP family), PFOR_PNO subfamily, TPP-binding module; composed of proteins similar to the single subunit pyruvate ferredoxin oxidoreductase (PFOR) of Desulfovibrio Africanus, present in bacteria and amitochondriate eukaryotes. This subfamily also includes proteins characterized as pyruvate NADP+ oxidoreductase (PNO). These enzymes are dependent on TPP and a divalent metal cation as cofactors. PFOR and PNO catalyze the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The PFOR from cyanobacterium Anabaena (NifJ) is required for the transfer of electrons from pyruvate to flavodoxin, which reduces nitrogenase. The facultative anaerobic mitochondrion of the photosynthetic protist Euglena gra
Probab=24.84 E-value=86 Score=26.14 Aligned_cols=23 Identities=13% Similarity=0.186 Sum_probs=21.3
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEE
Q psy7291 5 YNSEDAKGLLKAAIRDPDPVVFL 27 (158)
Q Consensus 5 ~d~~e~~~~l~~a~~~~~P~~iR 27 (158)
+++.++..+++.|.+++||.+|-
T Consensus 241 ~~~~~~~~~i~eA~~~~Gps~I~ 263 (365)
T cd03377 241 ANDNQTLKAFREAEAYDGPSLII 263 (365)
T ss_pred cCHHHHHHHHHHHhcCCCCEEEE
Confidence 48999999999999999999984
No 448
>PF01936 NYN: NYN domain; InterPro: IPR021139 This highly conserved domain has no known function. However it contains many conserved aspartates, suggesting an enzymatic function such as an endonuclease or glycosyl hydrolase.; PDB: 2QIP_A.
Probab=24.75 E-value=1.2e+02 Score=20.59 Aligned_cols=50 Identities=16% Similarity=0.216 Sum_probs=23.7
Q ss_pred cEEEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhCCCeEEEEe
Q psy7291 78 DITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKTNYLISVE 135 (158)
Q Consensus 78 ~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~~~vvvvE 135 (158)
+..+|.+|-. --..+++.|+++|..+.++.. ..-..+.|++. ++.++.+|
T Consensus 97 d~ivLvSgD~--Df~~~v~~l~~~g~~V~v~~~---~~~~s~~L~~~---ad~f~~~~ 146 (146)
T PF01936_consen 97 DTIVLVSGDS--DFAPLVRKLRERGKRVIVVGA---EDSASEALRSA---ADEFISIE 146 (146)
T ss_dssp SEEEEE---G--GGHHHHHHHHHH--EEEEEE----GGGS-HHHHHH---SSEEEE--
T ss_pred CEEEEEECcH--HHHHHHHHHHHcCCEEEEEEe---CCCCCHHHHHh---cCEEEeCC
Confidence 6777777751 233356677777888888874 22333444444 45566655
No 449
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=24.72 E-value=1.2e+02 Score=19.93 Aligned_cols=57 Identities=16% Similarity=0.128 Sum_probs=29.6
Q ss_pred CCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhCCCeEEEE
Q psy7291 76 GKDITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKTNYLISV 134 (158)
Q Consensus 76 g~~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~~~vvvv 134 (158)
+-|+++|++.+..+.. .+..+-+.|+++=+=++-...+-+-+.+.+.+++++..+.|
T Consensus 62 ~~D~V~I~tp~~~h~~--~~~~~l~~g~~v~~EKP~~~~~~~~~~l~~~a~~~~~~~~V 118 (120)
T PF01408_consen 62 DVDAVIIATPPSSHAE--IAKKALEAGKHVLVEKPLALTLEEAEELVEAAKEKGVKVMV 118 (120)
T ss_dssp TESEEEEESSGGGHHH--HHHHHHHTTSEEEEESSSSSSHHHHHHHHHHHHHHTSCEEE
T ss_pred cCCEEEEecCCcchHH--HHHHHHHcCCEEEEEcCCcCCHHHHHHHHHHHHHhCCEEEE
Confidence 5789999998866543 23344445764332222222222223455555655554443
No 450
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=24.57 E-value=1.5e+02 Score=16.94 Aligned_cols=28 Identities=18% Similarity=0.209 Sum_probs=23.9
Q ss_pred hhHHHHHHHHHHHHhCCCcEEEEEeccc
Q psy7291 86 KAVETALDAAKILAGQGIDAEVINLRSL 113 (158)
Q Consensus 86 ~~~~~a~ea~~~L~~~gi~~~vi~~~~l 113 (158)
+....+..+.+.|++.|++.+.+++..-
T Consensus 7 ~~C~~C~~~~~~L~~~~i~y~~~dv~~~ 34 (60)
T PF00462_consen 7 PGCPYCKKAKEFLDEKGIPYEEVDVDED 34 (60)
T ss_dssp TTSHHHHHHHHHHHHTTBEEEEEEGGGS
T ss_pred CCCcCHHHHHHHHHHcCCeeeEcccccc
Confidence 4567888889999999999999999873
No 451
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=24.54 E-value=1.4e+02 Score=20.50 Aligned_cols=35 Identities=20% Similarity=0.287 Sum_probs=25.2
Q ss_pred cEEEEEechhHHHHHHHHHHHHhCCC-cEEEEEeccccC
Q psy7291 78 DITIVGHSKAVETALDAAKILAGQGI-DAEVINLRSLRP 115 (158)
Q Consensus 78 ~~~ii~~G~~~~~a~ea~~~L~~~gi-~~~vi~~~~l~P 115 (158)
+++|++.|.+...+ ++.|...|+ ++.++|...+.+
T Consensus 1 ~VliiG~GglGs~i---a~~L~~~Gv~~i~ivD~d~v~~ 36 (143)
T cd01483 1 RVLLVGLGGLGSEI---ALNLARSGVGKITLIDFDTVEL 36 (143)
T ss_pred CEEEECCCHHHHHH---HHHHHHCCCCEEEEEcCCCcCc
Confidence 37899999877754 556666787 589998775544
No 452
>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase. This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.
Probab=24.51 E-value=2.9e+02 Score=22.30 Aligned_cols=38 Identities=13% Similarity=0.117 Sum_probs=26.0
Q ss_pred cEEEEEeccc-cC----CCHHHHHHHHhCCCeEEEEeCCcCCC
Q psy7291 104 DAEVINLRSL-RP----LDIETITKSVMKTNYLISVEGGWPQC 141 (158)
Q Consensus 104 ~~~vi~~~~l-~P----ld~~~l~~~~~~~~~vvvvEe~~~~G 141 (158)
+..+|.+..+ +| .|.+.|.+++++++.++++||.+..|
T Consensus 170 ~~~~v~~~~v~~~tG~~~~l~~i~~la~~~~~~li~De~~~~g 212 (393)
T TIGR01822 170 RHRLIATDGVFSMDGVIAPLDEICDLADKYDALVMVDECHATG 212 (393)
T ss_pred CceEEEEeCCccCCCCcCCHHHHHHHHHHcCCEEEEECCcccc
Confidence 4455554433 44 67788888888888888888876444
No 453
>PRK07505 hypothetical protein; Provisional
Probab=24.47 E-value=2.5e+02 Score=22.96 Aligned_cols=25 Identities=4% Similarity=0.125 Sum_probs=14.1
Q ss_pred CHHHHHHHHhCCCeEEEEeCCcCCC
Q psy7291 117 DIETITKSVMKTNYLISVEGGWPQC 141 (158)
Q Consensus 117 d~~~l~~~~~~~~~vvvvEe~~~~G 141 (158)
+.+.|.+++++++.++++||.+..|
T Consensus 197 ~~~~i~~l~~~~~~~li~DEa~~~~ 221 (402)
T PRK07505 197 PVKELLRLQEKYGLFLYIDDAHGLS 221 (402)
T ss_pred CHHHHHHHHHHcCCEEEEECccccc
Confidence 3455666666666666666654333
No 454
>PRK09271 flavodoxin; Provisional
Probab=24.40 E-value=2.6e+02 Score=19.77 Aligned_cols=31 Identities=6% Similarity=0.119 Sum_probs=18.7
Q ss_pred EEEEechhHHHHHHHH----HHHHhCCCcEEEEEe
Q psy7291 80 TIVGHSKAVETALDAA----KILAGQGIDAEVINL 110 (158)
Q Consensus 80 ~ii~~G~~~~~a~ea~----~~L~~~gi~~~vi~~ 110 (158)
++|.|||+.+...+.+ +.|+.+|+.+.+.++
T Consensus 3 v~IvY~S~tGnTe~~A~~ia~~l~~~g~~v~~~~~ 37 (160)
T PRK09271 3 ILLAYASLSGNTREVAREIEERCEEAGHEVDWVET 37 (160)
T ss_pred EEEEEEcCCchHHHHHHHHHHHHHhCCCeeEEEec
Confidence 4566777666655544 455666777665543
No 455
>TIGR01465 cobM_cbiF precorrin-4 C11-methyltransferase. This model represents precorrin-4 C11-methyltransferase, one of two methyltransferases commonly referred to as precorrin-3 methylase (the other is precorrin-3B C17-methyltransferase, EC 2.1.1.131). This enzyme participates in the pathway toward the biosynthesis of cobalamin and related products.
Probab=24.35 E-value=1.2e+02 Score=22.77 Aligned_cols=77 Identities=14% Similarity=0.211 Sum_probs=45.2
Q ss_pred CCcEEEEEechh--HHHHHHHHHHHHhCCCcEEEE-------------Eecc---------c-------cCCC-HHHHHH
Q psy7291 76 GKDITIVGHSKA--VETALDAAKILAGQGIDAEVI-------------NLRS---------L-------RPLD-IETITK 123 (158)
Q Consensus 76 g~~~~ii~~G~~--~~~a~ea~~~L~~~gi~~~vi-------------~~~~---------l-------~Pld-~~~l~~ 123 (158)
|.++++++.|-. +....+.++.+++.|+++.++ .+++ + .|.+ .+.+..
T Consensus 71 g~~V~~L~~GDP~~~~~~~~l~~~~~~~g~~veviPGiSS~~aa~a~~g~~l~~~~~~~~~~~~~~~g~~~~~~~~~l~~ 150 (229)
T TIGR01465 71 GKLVVRLHTGDPSIYGAIAEQMQLLEALGIPYEVVPGVSSFFAAAAALGAELTVPEVSQTVILTRAEGRTPMPEGEKLAD 150 (229)
T ss_pred CCeEEEEeCcCccccccHHHHHHHHHHCCCCEEEECChhHHHHHHHHcCCCccccCCccEEEEEeccCCCCCCChHHHHH
Confidence 678888888854 344445555666666666654 1111 0 1322 344666
Q ss_pred HHhCCCeEEEEeCCcCCCChHHHHHHHHHcCCC
Q psy7291 124 SVMKTNYLISVEGGWPQCGIGSEISARIMEIPY 156 (158)
Q Consensus 124 ~~~~~~~vvvvEe~~~~GG~g~~i~~~l~~~~~ 156 (158)
+++....+++++... .+ ..+++.|.+.|+
T Consensus 151 ~~~~~~~~vi~~~~~---~~-~~i~~~L~~~g~ 179 (229)
T TIGR01465 151 LAKHGATMAIFLSAH---IL-DKVVKELIEGGY 179 (229)
T ss_pred HhcCCCeEEEECcHH---HH-HHHHHHHHHcCc
Confidence 666666778886442 23 677888887765
No 456
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=24.33 E-value=64 Score=21.36 Aligned_cols=62 Identities=13% Similarity=0.143 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHhCCCcEEEEEeccccCCCHH------------HHHHHHhCCCeEEEEeCCcCCCChH-HHHHHHH
Q psy7291 89 ETALDAAKILAGQGIDAEVINLRSLRPLDIE------------TITKSVMKTNYLISVEGGWPQCGIG-SEISARI 151 (158)
Q Consensus 89 ~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~------------~l~~~~~~~~~vvvvEe~~~~GG~g-~~i~~~l 151 (158)
+.+++.+++|.+.|..+.+.|+..- +.... .+.+.++..+.||+.=+|.....+. +.+...+
T Consensus 17 Sp~~~l~~~L~~~g~~V~~~DP~v~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~vvl~t~h~~f~~l~~~~~~~~~ 91 (106)
T PF03720_consen 17 SPALELIEELKERGAEVSVYDPYVD-EEEIKELGKLEGVEVCDDLEEALKGADAVVLATDHDEFRELDWEEIAKLM 91 (106)
T ss_dssp -HHHHHHHHHHHTT-EEEEE-TTSH-HHHHHHHCHHHCEEEESSHHHHHTTESEEEESS--GGGGCCGHHHHHHHS
T ss_pred CHHHHHHHHHHHCCCEEEEECCccC-hHHHHhhCCccceEEecCHHHHhcCCCEEEEEecCHHHhccCHHHHHHhc
Confidence 4566788899999999999987652 22111 2356677888888888887655542 3444433
No 457
>PF11965 DUF3479: Domain of unknown function (DUF3479); InterPro: IPR022571 This functionally uncharacterised domain, found N-terminal to PF02514 from PFAM, occurs in magnesium chelatase subunit H, which is involved in chlorophyll biosynthesis. It is found in bacteria, green plants and archaea. It is around 160 amino acids in length.; GO: 0016851 magnesium chelatase activity
Probab=24.29 E-value=2.9e+02 Score=20.26 Aligned_cols=10 Identities=20% Similarity=0.205 Sum_probs=4.7
Q ss_pred CCCeEEEEeC
Q psy7291 127 KTNYLISVEG 136 (158)
Q Consensus 127 ~~~~vvvvEe 136 (158)
.++.++++|.
T Consensus 85 ~~~a~i~~~s 94 (164)
T PF11965_consen 85 HCPAMIIFES 94 (164)
T ss_pred cCCEEEEEcC
Confidence 3344555544
No 458
>TIGR00418 thrS threonyl-tRNA synthetase. This model represents the threonyl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. Note that B. subtilis has closely related isozymes thrS and thrZ. The N-terminal regions are quite dissimilar between archaeal and eubacterial forms, while some eukaryotic forms are missing sequence there altogether..
Probab=24.25 E-value=3.2e+02 Score=23.74 Aligned_cols=58 Identities=21% Similarity=0.321 Sum_probs=36.5
Q ss_pred CCcEEEEEechh-HHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHH-HhCCCeEEEEeC
Q psy7291 76 GKDITIVGHSKA-VETALDAAKILAGQGIDAEVINLRSLRPLDIETITKS-VMKTNYLISVEG 136 (158)
Q Consensus 76 g~~~~ii~~G~~-~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~-~~~~~~vvvvEe 136 (158)
..++.||..|.. ...|.+.++.|++.|+.+.+ |.+. +.+..+ ++.+ ..+.+.++++-+
T Consensus 470 p~~v~vi~~~~~~~~~a~~ia~~LR~~Gi~v~~-d~~~-~sl~~q-~k~A~~~g~~~~iiiG~ 529 (563)
T TIGR00418 470 PVQVVVIPVNERHLDYAKKVAQKLKKAGIRVDV-DDRN-ERLGKK-IREAQKQKIPYMLVVGD 529 (563)
T ss_pred CceEEEEEccchHHHHHHHHHHHHHHcCCEEEE-ECCC-CCHHHH-HHHHHhcCCCEEEEEch
Confidence 356888888853 46688888889888888775 4433 344333 3333 234566777754
No 459
>PRK10262 thioredoxin reductase; Provisional
Probab=24.25 E-value=2.8e+02 Score=21.83 Aligned_cols=34 Identities=21% Similarity=0.425 Sum_probs=25.6
Q ss_pred CCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEecc
Q psy7291 76 GKDITIVGHSKAVETALDAAKILAGQGIDAEVINLRS 112 (158)
Q Consensus 76 g~~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~ 112 (158)
+..++||+.|. .+.|.+..|.+.+.++.++.-..
T Consensus 146 g~~vvVvGgG~---~g~e~A~~l~~~~~~Vtlv~~~~ 179 (321)
T PRK10262 146 NQKVAVIGGGN---TAVEEALYLSNIASEVHLIHRRD 179 (321)
T ss_pred CCEEEEECCCH---HHHHHHHHHHhhCCEEEEEEECC
Confidence 67899998884 45566777777788899987653
No 460
>PRK00923 sirohydrochlorin cobaltochelatase; Reviewed
Probab=24.23 E-value=2.3e+02 Score=19.08 Aligned_cols=65 Identities=17% Similarity=0.100 Sum_probs=33.0
Q ss_pred cEEEEEechhHHHHHHH----HHHHHhCC--CcEEEEEeccccCCCHHHHHHHHh-CCCeEEEEeCCcCCCC
Q psy7291 78 DITIVGHSKAVETALDA----AKILAGQG--IDAEVINLRSLRPLDIETITKSVM-KTNYLISVEGGWPQCG 142 (158)
Q Consensus 78 ~~~ii~~G~~~~~a~ea----~~~L~~~g--i~~~vi~~~~l~Pld~~~l~~~~~-~~~~vvvvEe~~~~GG 142 (158)
-+++++.||.-..+.+. .+.+++.+ ..+.+--+..-.|--++.+.++.+ +.++|+++==....|.
T Consensus 3 ~lvlv~hGS~~~~~~~~~~~~~~~l~~~~~~~~v~~afle~~~P~l~~~l~~l~~~g~~~v~vvPlfl~~G~ 74 (126)
T PRK00923 3 GLLLVGHGSRLPYNKEVVTKIAEKIKEKHPFYIVEVGFMEFNEPTIPEALKKLIGTGADKIIVVPVFLAHGV 74 (126)
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHHHhCCCCeEEEEEEEcCCCCHHHHHHHHHHcCCCEEEEEchhhccCc
Confidence 36778888865444333 33344432 122222222224665666666654 4577777654444443
No 461
>PRK07199 phosphoribosylpyrophosphate synthetase; Provisional
Probab=24.19 E-value=3.8e+02 Score=21.51 Aligned_cols=63 Identities=13% Similarity=0.148 Sum_probs=41.6
Q ss_pred CCcEEEEEechh----HHHHHHHHHHHHhCCC-cEEEEEeccc-----------cCCCHHHHHHHHhC-CCeEEEEeCCc
Q psy7291 76 GKDITIVGHSKA----VETALDAAKILAGQGI-DAEVINLRSL-----------RPLDIETITKSVMK-TNYLISVEGGW 138 (158)
Q Consensus 76 g~~~~ii~~G~~----~~~a~ea~~~L~~~gi-~~~vi~~~~l-----------~Pld~~~l~~~~~~-~~~vvvvEe~~ 138 (158)
|.++.||...+. .-+.+-.++-|++.|. ++++|-+.+- -|+..+.+.++++. .++|+++|-|.
T Consensus 49 g~~V~ivqs~~~~n~~l~elll~~~alr~~~a~~i~~ViPY~~YaRqDr~~~~ge~isak~vA~ll~~~~d~vit~DlH~ 128 (301)
T PRK07199 49 GRTVVLVCSLDRPDEKLLPLLFAAEAARELGARRVGLVAPYLAYMRQDIAFHPGEAISQRHFARLLSGSFDRLVTVDPHL 128 (301)
T ss_pred CCEEEEECCCCCCcHHHHHHHHHHHHHHHcCCCeEEEEeecccccccccccCCCCCccHHHHHHHHHhhcCeEEEEeccc
Confidence 778988888643 2233334556666664 4666633221 27888888888765 78999999995
No 462
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=24.19 E-value=1.8e+02 Score=18.92 Aligned_cols=16 Identities=19% Similarity=0.347 Sum_probs=11.9
Q ss_pred HHHHHHhCCCcEEEEE
Q psy7291 94 AAKILAGQGIDAEVIN 109 (158)
Q Consensus 94 a~~~L~~~gi~~~vi~ 109 (158)
.-+.++++|+++.+..
T Consensus 23 i~~~l~~~gi~~~v~~ 38 (94)
T PRK10310 23 IKELCQSHNIPVELIQ 38 (94)
T ss_pred HHHHHHHCCCeEEEEE
Confidence 3356788899988776
No 463
>PLN02417 dihydrodipicolinate synthase
Probab=24.17 E-value=2.9e+02 Score=21.71 Aligned_cols=74 Identities=15% Similarity=0.010 Sum_probs=42.7
Q ss_pred EEEEEech-hHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHH----HHhCCCeEEEEeCCcCCC-ChHHHHHHHHH
Q psy7291 79 ITIVGHSK-AVETALDAAKILAGQGIDAEVINLRSLRPLDIETITK----SVMKTNYLISVEGGWPQC-GIGSEISARIM 152 (158)
Q Consensus 79 ~~ii~~G~-~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~----~~~~~~~vvvvEe~~~~G-G~g~~i~~~l~ 152 (158)
-+|++.|. .+..+.+-++..++.|.+.-++-.+...+.+++.+.+ +++.. .|++...-...| .+.-++...|.
T Consensus 72 pvi~gv~~~~t~~~i~~a~~a~~~Gadav~~~~P~y~~~~~~~i~~~f~~va~~~-pi~lYn~P~~tg~~l~~~~l~~l~ 150 (280)
T PLN02417 72 KVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSQEGLIKHFETVLDMG-PTIIYNVPGRTGQDIPPEVIFKIA 150 (280)
T ss_pred cEEEECCCccHHHHHHHHHHHHHcCCCEEEEcCCccCCCCHHHHHHHHHHHHhhC-CEEEEEChhHhCcCCCHHHHHHHh
Confidence 45666775 4566777667677778887777666655655655433 33334 666665433222 34445555555
Q ss_pred c
Q psy7291 153 E 153 (158)
Q Consensus 153 ~ 153 (158)
+
T Consensus 151 ~ 151 (280)
T PLN02417 151 Q 151 (280)
T ss_pred c
Confidence 4
No 464
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=24.12 E-value=3e+02 Score=21.71 Aligned_cols=78 Identities=18% Similarity=0.097 Sum_probs=44.5
Q ss_pred CCcEEEEEech-hHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHH----HHhCC-CeEEEEeCCcCCC-ChHHHHH
Q psy7291 76 GKDITIVGHSK-AVETALDAAKILAGQGIDAEVINLRSLRPLDIETITK----SVMKT-NYLISVEGGWPQC-GIGSEIS 148 (158)
Q Consensus 76 g~~~~ii~~G~-~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~----~~~~~-~~vvvvEe~~~~G-G~g~~i~ 148 (158)
++--+|++.|. .+..+.+-++..++.|.+.-++-.+...+.+++.+.+ +++.. -.|++...-...| .+..++.
T Consensus 72 ~~~~viagvg~~~t~~ai~~a~~a~~~Gad~v~v~~P~y~~~~~~~l~~~f~~va~a~~lPv~iYn~P~~tg~~l~~~~l 151 (293)
T PRK04147 72 GKVKLIAQVGSVNTAEAQELAKYATELGYDAISAVTPFYYPFSFEEICDYYREIIDSADNPMIVYNIPALTGVNLSLDQF 151 (293)
T ss_pred CCCCEEecCCCCCHHHHHHHHHHHHHcCCCEEEEeCCcCCCCCHHHHHHHHHHHHHhCCCCEEEEeCchhhccCCCHHHH
Confidence 33346666664 5666777777777778887777777666666655433 33332 3566665332222 2445555
Q ss_pred HHHHc
Q psy7291 149 ARIME 153 (158)
Q Consensus 149 ~~l~~ 153 (158)
..|++
T Consensus 152 ~~L~~ 156 (293)
T PRK04147 152 NELFT 156 (293)
T ss_pred HHHhc
Confidence 55554
No 465
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=24.12 E-value=1.2e+02 Score=23.88 Aligned_cols=33 Identities=30% Similarity=0.401 Sum_probs=25.4
Q ss_pred CCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEec
Q psy7291 76 GKDITIVGHSKAVETALDAAKILAGQGIDAEVINLR 111 (158)
Q Consensus 76 g~~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~ 111 (158)
..|++|++-|+.--. |+..|.+.|.++.++--+
T Consensus 30 esDViIVGaGPsGLt---AAyyLAk~g~kV~i~E~~ 62 (262)
T COG1635 30 ESDVIIVGAGPSGLT---AAYYLAKAGLKVAIFERK 62 (262)
T ss_pred hccEEEECcCcchHH---HHHHHHhCCceEEEEEee
Confidence 579999999986544 567788889998887543
No 466
>PF01918 Alba: Alba; InterPro: IPR002775 Members of this family include the archaeal protein Alba and a number of eukaryotic proteins with no known function. The DNA/RNA-binding protein Alba binds double-stranded DNA tightly but without sequence specificity. It binds rRNA and mRNA in vivo, and may play a role in maintaining the structural and functional stability of RNA, and, perhaps, ribosomes. It is distributed uniformly and abundantly on the chromosome. Alba has been shown to bind DNA and affect DNA supercoiling in a temperature dependent manner []. It is regulated by acetylation (alba = acetylation lowers binding affinity) by the Sir2 protein. Alba is proposed to play a role in establishment or maintenance of chromatin architecture and thereby in transcription repression. For further information see [].; GO: 0003676 nucleic acid binding; PDB: 3TOE_B 3IAB_A 1NFJ_A 1NFH_B 2Q3V_B 1VM0_B 1NH9_A 1Y9X_A 3U6Y_C 2H9U_A ....
Probab=24.11 E-value=1.7e+02 Score=17.61 Aligned_cols=27 Identities=26% Similarity=0.454 Sum_probs=23.8
Q ss_pred CCcEEEEEechhHHHHHHHHHHHHhCC
Q psy7291 76 GKDITIVGHSKAVETALDAAKILAGQG 102 (158)
Q Consensus 76 g~~~~ii~~G~~~~~a~ea~~~L~~~g 102 (158)
...+.|-+.|.....|...++.++.+.
T Consensus 30 ~~~V~l~g~G~aI~kaI~vaei~K~~~ 56 (70)
T PF01918_consen 30 NDEVVLKGRGKAISKAISVAEILKRRF 56 (70)
T ss_dssp CSEEEEEEECCHHHHHHHHHHHHHHHT
T ss_pred CCEEEEEEEcHHHHHHHHHHHHHHHhh
Confidence 468999999999999999999998763
No 467
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=24.11 E-value=2.3e+02 Score=23.63 Aligned_cols=70 Identities=17% Similarity=0.235 Sum_probs=40.4
Q ss_pred EEEechhHHHHHHHHHH-HHhCCCcEEEEEeccccCCCHHHHHHHHhCCCeEEEEeCCc-CCCChH--HHHHHHHHcCC
Q psy7291 81 IVGHSKAVETALDAAKI-LAGQGIDAEVINLRSLRPLDIETITKSVMKTNYLISVEGGW-PQCGIG--SEISARIMEIP 155 (158)
Q Consensus 81 ii~~G~~~~~a~ea~~~-L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~~~vvvvEe~~-~~GG~g--~~i~~~l~~~~ 155 (158)
||..+..+....+-++. +...|+++..+ .+-|.+.+.+.++..-++|.+|--. +....- ..|++...++|
T Consensus 97 iv~~~~~Y~~t~~~~~~~l~~~gv~v~~~-----d~~d~~~l~~~l~~~t~~v~~EspsNP~l~v~Dl~~i~~~a~~~g 170 (386)
T PF01053_consen 97 IVASDDLYGGTYRLLEELLPRFGVEVTFV-----DPTDLEALEAALRPNTKLVFLESPSNPTLEVPDLEAIAKLAKEHG 170 (386)
T ss_dssp EEEESSSSHHHHHHHHHCHHHTTSEEEEE-----STTSHHHHHHHHCTTEEEEEEESSBTTTTB---HHHHHHHHHHTT
T ss_pred eEecCCccCcchhhhhhhhcccCcEEEEe-----CchhHHHHHhhccccceEEEEEcCCCcccccccHHHHHHHHHHhC
Confidence 34445555555555543 55567776555 4457777888887766788888633 222222 45666666655
No 468
>PF07071 DUF1341: Protein of unknown function (DUF1341); InterPro: IPR010763 Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.; PDB: 3NZR_D 3LM7_A 3M0Z_B 3M6Y_A 3N73_A 3MUX_A.
Probab=24.04 E-value=3.4e+02 Score=20.90 Aligned_cols=75 Identities=16% Similarity=0.232 Sum_probs=38.4
Q ss_pred CcEEEEEechhHHH-------HHHHHHHHHhCCC-cEEEEEeccccCCCH-HHHHHHHhCCCeEEEEeCCcCCCChH---
Q psy7291 77 KDITIVGHSKAVET-------ALDAAKILAGQGI-DAEVINLRSLRPLDI-ETITKSVMKTNYLISVEGGWPQCGIG--- 144 (158)
Q Consensus 77 ~~~~ii~~G~~~~~-------a~ea~~~L~~~gi-~~~vi~~~~l~Pld~-~~l~~~~~~~~~vvvvEe~~~~GG~g--- 144 (158)
.-.+-|++|+.... +..|+..|++-|. ++..+-+.=++-+++ ..+.+.+.+++ +.. | +.||+.
T Consensus 116 ~G~VkIsTGp~Ss~~~~~~V~vetAiaml~dmG~~SiKffPm~Gl~~leE~~avAkA~a~~g-~~l-E---PTGGIdl~N 190 (218)
T PF07071_consen 116 PGKVKISTGPLSSQGPDAIVPVETAIAMLKDMGGSSIKFFPMGGLKHLEELKAVAKACARNG-FTL-E---PTGGIDLDN 190 (218)
T ss_dssp TTEEE---STTHHGSS--EEEHHHHHHHHHHTT--EEEE---TTTTTHHHHHHHHHHHHHCT--EE-E---EBSS--TTT
T ss_pred ceEEEeccCCccccCCCccccHHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcC-cee-C---CcCCcCHHH
Confidence 35788999998643 4556777887663 344444444444444 23455555554 333 5 568985
Q ss_pred -HHHHHHHHcCCC
Q psy7291 145 -SEISARIMEIPY 156 (158)
Q Consensus 145 -~~i~~~l~~~~~ 156 (158)
+.|.....++|.
T Consensus 191 ~~~I~~i~l~aGv 203 (218)
T PF07071_consen 191 FEEIVKICLDAGV 203 (218)
T ss_dssp HHHHHHHHHHTT-
T ss_pred HHHHHHHHHHcCC
Confidence 677777777765
No 469
>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=24.00 E-value=4.1e+02 Score=21.80 Aligned_cols=50 Identities=16% Similarity=0.173 Sum_probs=26.1
Q ss_pred CCCcEEEEEeccccCCCHHHHHHHHhCCCeEEEEeCC-cCCCChH--HHHHHHHHcCC
Q psy7291 101 QGIDAEVINLRSLRPLDIETITKSVMKTNYLISVEGG-WPQCGIG--SEISARIMEIP 155 (158)
Q Consensus 101 ~gi~~~vi~~~~l~Pld~~~l~~~~~~~~~vvvvEe~-~~~GG~g--~~i~~~l~~~~ 155 (158)
.|+++..+++ .|.+.+.+.++...+++++|.- ++.|-.- ..|++...++|
T Consensus 109 ~G~~v~~vd~-----~d~~~le~~i~~~tklv~le~psnptg~v~dl~~I~~la~~~g 161 (378)
T TIGR01329 109 SGVVVVHVDT-----TDLDKVKAALGPKTKLVLLESPTNPLQKIVDIRKISEMAHAQN 161 (378)
T ss_pred cCcEEEEeCC-----CCHHHHHHhcCcCceEEEEECCCCCCCeeecHHHHHHHHHHcC
Confidence 3555544443 2556666666554567777743 3333322 45555555554
No 470
>PLN02837 threonine-tRNA ligase
Probab=23.95 E-value=3.6e+02 Score=23.99 Aligned_cols=58 Identities=19% Similarity=0.163 Sum_probs=39.3
Q ss_pred CCcEEEEEech-hHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHH-HhCCCeEEEEeCC
Q psy7291 76 GKDITIVGHSK-AVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKS-VMKTNYLISVEGG 137 (158)
Q Consensus 76 g~~~~ii~~G~-~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~-~~~~~~vvvvEe~ 137 (158)
..+++||..+. ....|.+.++.|++.|+.+.+ +.. ..+..+ ++.. ..+.+.+++|-+.
T Consensus 516 P~qV~IIpi~~~~~~~A~~Ia~~Lr~~GirVev-~~~--~slgkk-ir~A~~~gip~~IiIG~~ 575 (614)
T PLN02837 516 PVQARVLPVTDNELEYCKEVVAKLKAKGIRAEV-CHG--ERLPKL-IRNAETQKIPLMAVVGPK 575 (614)
T ss_pred CccEEEEEeChHHHHHHHHHHHHHHHCCCEEEE-eCC--CCHHHH-HHHHHHcCCCEEEEEcch
Confidence 45788888765 457788899999999999988 322 334333 4443 4466778887643
No 471
>TIGR00762 DegV EDD domain protein, DegV family. This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each than to most homologs from other species. This suggests both recent paralogy and diversity of function. DegV itself is encoded immediately downstream of DegU, a transcriptional regulator of degradation, but is itself uncharacterized. Crystallography suggested a lipid-binding site, while comparison of the crystal structure to dihydroxyacetone kinase and to a mannose transporter EIIA domain suggests a conserved domain, EDD, with phosphotransferase activity.
Probab=23.92 E-value=3.2e+02 Score=21.33 Aligned_cols=16 Identities=13% Similarity=0.281 Sum_probs=9.4
Q ss_pred eEEEEeCCcCCCChHH
Q psy7291 130 YLISVEGGWPQCGIGS 145 (158)
Q Consensus 130 ~vvvvEe~~~~GG~g~ 145 (158)
+|.+++-.....|.|-
T Consensus 108 ~i~ViDS~~~s~~~g~ 123 (275)
T TIGR00762 108 KVTVIDSKSASMGLGL 123 (275)
T ss_pred CEEEECChHHHHHHHH
Confidence 5667766665555553
No 472
>TIGR01743 purR_Bsub pur operon repressor, Bacillus subtilis type. This model represents the puring operon repressor PurR of low-GC Gram-positive bacteria. This homodimeric repressor contains a large region homologous to phosphoribosyltransferases and is inhibited by 5-phosphoribosyl 1-pyrophosphate.
Probab=23.87 E-value=1e+02 Score=24.55 Aligned_cols=33 Identities=9% Similarity=0.017 Sum_probs=28.2
Q ss_pred HHhCCCeEEEEeCCcCCCChHHHHHHHHHcCCC
Q psy7291 124 SVMKTNYLISVEGGWPQCGIGSEISARIMEIPY 156 (158)
Q Consensus 124 ~~~~~~~vvvvEe~~~~GG~g~~i~~~l~~~~~ 156 (158)
.+...++|++||+-...||--..+.+.+.+.|.
T Consensus 190 ~l~~G~rVLIVDDv~~TGgTi~a~i~Ll~e~Ga 222 (268)
T TIGR01743 190 SLKTGSKVLIIDDFMKAGGTINGMINLLDEFDA 222 (268)
T ss_pred hCCCcCEEEEEeeecccCHHHHHHHHHHHHCCC
Confidence 456678999999999999998888888888764
No 473
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=23.84 E-value=3.7e+02 Score=21.72 Aligned_cols=51 Identities=18% Similarity=0.071 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEecc--------------ccCCCHHHHHHHHhCCCeEEEEeCCc
Q psy7291 88 VETALDAAKILAGQGIDAEVINLRS--------------LRPLDIETITKSVMKTNYLISVEGGW 138 (158)
Q Consensus 88 ~~~a~ea~~~L~~~gi~~~vi~~~~--------------l~Pld~~~l~~~~~~~~~vvvvEe~~ 138 (158)
-..+++.++.+++.+|.+++|.+.. -.|=+.+.+.++-+..-++++.....
T Consensus 23 ~~ev~~~~~~~~~~~iP~d~i~lD~~~~~~~~~f~~d~~~FPdp~~mi~~L~~~G~k~~~~~~P~ 87 (339)
T cd06603 23 QEDVKEVDAGFDEHDIPYDVIWLDIEHTDGKRYFTWDKKKFPDPEKMQEKLASKGRKLVTIVDPH 87 (339)
T ss_pred HHHHHHHHHHHHHcCCCceEEEEChHHhCCCCceEeCcccCCCHHHHHHHHHHCCCEEEEEecCc
Confidence 4567778888888888887774332 23433345555554444555555433
No 474
>PRK00046 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=23.78 E-value=88 Score=25.68 Aligned_cols=26 Identities=27% Similarity=0.197 Sum_probs=22.6
Q ss_pred cccCCHHHHHHHHHHHHhCCCcEEEE
Q psy7291 2 VSPYNSEDAKGLLKAAIRDPDPVVFL 27 (158)
Q Consensus 2 ~~P~d~~e~~~~l~~a~~~~~P~~iR 27 (158)
+.|.|.+|+..+++++-+.+.|++|.
T Consensus 25 ~~p~~~~el~~~~~~~~~~~~p~~vl 50 (334)
T PRK00046 25 VEAESEEQLLEALADARAAGLPVLVL 50 (334)
T ss_pred EeeCCHHHHHHHHHHHHHcCCCEEEE
Confidence 57999999999999988877888874
No 475
>PRK13018 cell division protein FtsZ; Provisional
Probab=23.77 E-value=4.4e+02 Score=22.08 Aligned_cols=61 Identities=21% Similarity=0.303 Sum_probs=38.4
Q ss_pred CCcEEEEEec----hhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHH----------HHHHHHhCCCeEEEEeCCcC
Q psy7291 76 GKDITIVGHS----KAVETALDAAKILAGQGIDAEVINLRSLRPLDIE----------TITKSVMKTNYLISVEGGWP 139 (158)
Q Consensus 76 g~~~~ii~~G----~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~----------~l~~~~~~~~~vvvvEe~~~ 139 (158)
+.|..+|+.| ..+..+--.++.+++.++. ++.+ ...||+.+ .|.++.+..+.++++++...
T Consensus 112 ~~D~vfI~aGLGGGTGSGaapvIa~iake~g~l--tv~v-Vt~Pf~~EG~~r~~nA~~gL~~L~e~~D~vividNd~L 186 (378)
T PRK13018 112 GADLVFVTAGMGGGTGTGAAPVVAEIAKEQGAL--VVGV-VTKPFKFEGRARMQKAEEGIERLREAADTVIVIDNNRL 186 (378)
T ss_pred CCCEEEEEeeccCcchhhHHHHHHHHHHHcCCC--eEEE-EEcCcccccHhHHHHHHHHHHHHHHhCCEEEEEecHHH
Confidence 6677777543 2233444445666666643 3443 45898855 57777778899999997643
No 476
>PRK12305 thrS threonyl-tRNA synthetase; Reviewed
Probab=23.76 E-value=3.7e+02 Score=23.49 Aligned_cols=58 Identities=26% Similarity=0.336 Sum_probs=38.9
Q ss_pred CcEEEEEech-hHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHH-HhCCCeEEEEeCC
Q psy7291 77 KDITIVGHSK-AVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKS-VMKTNYLISVEGG 137 (158)
Q Consensus 77 ~~~~ii~~G~-~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~-~~~~~~vvvvEe~ 137 (158)
.++.|+..+. ....|.+.++.|++.|+.+.+ +.+. ..+..+ ++.+ ..+.+.++++-+.
T Consensus 477 ~~v~Ii~~~~~~~~~a~~i~~~Lr~~gi~v~~-d~~~-~~l~kk-~~~A~~~g~p~~iivG~~ 536 (575)
T PRK12305 477 VQVVIIPVADAHNEYAEEVAKKLRAAGIRVEV-DTSN-ERLNKK-IRNAQKQKIPYMLVVGDK 536 (575)
T ss_pred ccEEEEEeChHHHHHHHHHHHHHHHCCCEEEE-ECCC-CCHHHH-HHHHHhcCCCEEEEEech
Confidence 4788888886 456788889999999998876 4443 445444 4443 3356677777543
No 477
>PRK03092 ribose-phosphate pyrophosphokinase; Provisional
Probab=23.76 E-value=3.9e+02 Score=21.48 Aligned_cols=63 Identities=13% Similarity=0.092 Sum_probs=41.8
Q ss_pred CCcEEEEEechh-----HHHHHHHHHHHHhCCC-cEEEEEecccc-----------CCCHHHHHHHHhC--CCeEEEEeC
Q psy7291 76 GKDITIVGHSKA-----VETALDAAKILAGQGI-DAEVINLRSLR-----------PLDIETITKSVMK--TNYLISVEG 136 (158)
Q Consensus 76 g~~~~ii~~G~~-----~~~a~ea~~~L~~~gi-~~~vi~~~~l~-----------Pld~~~l~~~~~~--~~~vvvvEe 136 (158)
|.++.||..... .-+.+-.++.|++.|- ++++|=+.+-+ |+..+.+.++++. .++|+++|-
T Consensus 36 g~~v~ii~s~~~p~nd~l~ell~~~~a~r~~~a~~i~~ViPYl~YaRQDr~~~~~e~isak~va~lL~~~g~d~vitvD~ 115 (304)
T PRK03092 36 GCDAFVLQSHTAPINKWLMEQLIMIDALKRASAKRITVVLPFYPYARQDKKHRGREPISARLVADLFKTAGADRIMTVDL 115 (304)
T ss_pred CCEEEEEeCCCCCCcHHHHHHHHHHHHHHHcCCCeEEEEEecccccccccccCCCCCccHHHHHHHHHhcCCCeEEEEec
Confidence 678888877421 2223334566666664 46666433322 7888888888875 689999999
Q ss_pred Cc
Q psy7291 137 GW 138 (158)
Q Consensus 137 ~~ 138 (158)
|.
T Consensus 116 H~ 117 (304)
T PRK03092 116 HT 117 (304)
T ss_pred Ch
Confidence 97
No 478
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=23.71 E-value=2.3e+02 Score=18.85 Aligned_cols=67 Identities=18% Similarity=0.175 Sum_probs=38.2
Q ss_pred EEEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhCCC-eEEEEeCCc-CCCChHHHHHHHHH
Q psy7291 79 ITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKTN-YLISVEGGW-PQCGIGSEISARIM 152 (158)
Q Consensus 79 ~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~~-~vvvvEe~~-~~GG~g~~i~~~l~ 152 (158)
+++++.........++++.++++|..+-.+ ..-.| +.++..+.. .++.+.++. ..+.|-..+...|+
T Consensus 47 ~I~iS~SG~t~e~i~~~~~a~~~g~~iI~I--T~~~~-----l~~~~~~~~~~~~~~p~~~~~r~s~~~~~~~~~~ 115 (119)
T cd05017 47 VIAVSYSGNTEETLSAVEQAKERGAKIVAI--TSGGK-----LLEMAREHGVPVIIIPKGLQPRAAFPYLFTALLN 115 (119)
T ss_pred EEEEECCCCCHHHHHHHHHHHHCCCEEEEE--eCCch-----HHHHHHHcCCcEEECCCCCCCceeHHHHHHHHHH
Confidence 444666667788999999999988654333 32222 566666442 333333332 34556566655543
No 479
>PRK06163 hypothetical protein; Provisional
Probab=23.69 E-value=1.1e+02 Score=23.08 Aligned_cols=24 Identities=17% Similarity=0.358 Sum_probs=21.2
Q ss_pred cCCHHHHHHHHHHHHhCCCcEEEE
Q psy7291 4 PYNSEDAKGLLKAAIRDPDPVVFL 27 (158)
Q Consensus 4 P~d~~e~~~~l~~a~~~~~P~~iR 27 (158)
-.+.+|+..+++++++.++|.+|-
T Consensus 146 v~~~~el~~al~~a~~~~~p~lIe 169 (202)
T PRK06163 146 AADEAHFEALVDQALSGPGPSFIA 169 (202)
T ss_pred eCCHHHHHHHHHHHHhCCCCEEEE
Confidence 468899999999999889999984
No 480
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=23.65 E-value=1.3e+02 Score=25.32 Aligned_cols=32 Identities=19% Similarity=0.232 Sum_probs=23.3
Q ss_pred CCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEe
Q psy7291 76 GKDITIVGHSKAVETALDAAKILAGQGIDAEVINL 110 (158)
Q Consensus 76 g~~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~ 110 (158)
.-|++||+.|+.... |+..+.+.|.++.+++-
T Consensus 2 ~yDvvVIG~GpaG~~---aA~~aa~~G~~V~liE~ 33 (450)
T TIGR01421 2 HYDYLVIGGGSGGIA---SARRAAEHGAKALLVEA 33 (450)
T ss_pred CCCEEEECcCHHHHH---HHHHHHHCCCcEEEecc
Confidence 358999999975544 34445667999999974
No 481
>PF12328 Rpp20: Rpp20 subunit of nuclear RNase MRP and P; PDB: 3IAB_B.
Probab=23.58 E-value=2.1e+02 Score=20.41 Aligned_cols=32 Identities=34% Similarity=0.526 Sum_probs=23.7
Q ss_pred CCcEEEEEechhHHHHHHHHHHHHhC-CCcEEE
Q psy7291 76 GKDITIVGHSKAVETALDAAKILAGQ-GIDAEV 107 (158)
Q Consensus 76 g~~~~ii~~G~~~~~a~ea~~~L~~~-gi~~~v 107 (158)
...++|.++|.....++..+..++++ ++.+.|
T Consensus 61 ~~~V~v~gtGkAIeKal~la~~Fq~~~~~~V~V 93 (144)
T PF12328_consen 61 SEEVTVKGTGKAIEKALSLALWFQRKKGYKVEV 93 (144)
T ss_dssp -SEEEEEEEGGGHHHHHHHHHHHHHTT---EEE
T ss_pred ccEEEEEeccHHHHHHHHHHHHHhhcCCeEEEE
Confidence 46899999999999999988888765 555444
No 482
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=23.53 E-value=86 Score=22.05 Aligned_cols=31 Identities=19% Similarity=0.356 Sum_probs=20.9
Q ss_pred EEEEEechhHHHHHHHHHHHHhCCCcEEEEEecc
Q psy7291 79 ITIVGHSKAVETALDAAKILAGQGIDAEVINLRS 112 (158)
Q Consensus 79 ~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~ 112 (158)
+.|++-|.......+.+.. -|..+.|+|.+-
T Consensus 1 L~I~GaG~va~al~~la~~---lg~~v~v~d~r~ 31 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAAL---LGFRVTVVDPRP 31 (136)
T ss_dssp EEEES-STCHHHHHHHHHH---CTEEEEEEES-C
T ss_pred CEEEeCcHHHHHHHHHHHh---CCCEEEEEcCCc
Confidence 3678888887766554444 489999999983
No 483
>TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase. This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different.
Probab=23.40 E-value=3.7e+02 Score=21.08 Aligned_cols=26 Identities=15% Similarity=0.065 Sum_probs=12.9
Q ss_pred CCHHHHHHHHhCCCeEEEEeCCcCCC
Q psy7291 116 LDIETITKSVMKTNYLISVEGGWPQC 141 (158)
Q Consensus 116 ld~~~l~~~~~~~~~vvvvEe~~~~G 141 (158)
+|.+.|.+++++++.++++|+-...|
T Consensus 142 ~~~~~i~~l~~~~~~~livD~~~s~g 167 (355)
T TIGR03301 142 NPLEAIAKVARSHGAVLIVDAMSSFG 167 (355)
T ss_pred hHHHHHHHHHHHcCCEEEEEeccccC
Confidence 34455555555555555555433333
No 484
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=23.30 E-value=3.9e+02 Score=23.87 Aligned_cols=48 Identities=23% Similarity=0.437 Sum_probs=30.9
Q ss_pred CCcEEEEEechhHHHHHHHHHHHHhCCC-cEEEEEeccc--cCCCHHHHHHHHh
Q psy7291 76 GKDITIVGHSKAVETALDAAKILAGQGI-DAEVINLRSL--RPLDIETITKSVM 126 (158)
Q Consensus 76 g~~~~ii~~G~~~~~a~ea~~~L~~~gi-~~~vi~~~~l--~Pld~~~l~~~~~ 126 (158)
|+.++||+.|.. +.+++..+...|. +++++..+.- .|-....+.+.++
T Consensus 323 gk~VvVIGgG~~---a~e~A~~l~~~Ga~~Vtlv~r~~~~~mpa~~~ei~~a~~ 373 (652)
T PRK12814 323 GKKVVVIGGGNT---AIDAARTALRLGAESVTILYRRTREEMPANRAEIEEALA 373 (652)
T ss_pred CCeEEEECCCHH---HHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHHHHHHH
Confidence 678999998854 4456666666675 5999987653 3433444555544
No 485
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=23.30 E-value=3.5e+02 Score=21.99 Aligned_cols=47 Identities=23% Similarity=0.216 Sum_probs=26.1
Q ss_pred EEEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhCCCeEEE
Q psy7291 79 ITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKTNYLIS 133 (158)
Q Consensus 79 ~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~~~vvv 133 (158)
.++|+-+..-.+....++.|++.||.+.+|- |. ++..++++.++|++
T Consensus 147 ~V~VtESRP~~eG~~~ak~L~~~gI~~~~I~-------Ds-a~~~~~~~vd~Viv 193 (301)
T COG1184 147 KVIVTESRPRGEGRIMAKELRQSGIPVTVIV-------DS-AVGAFMSRVDKVLV 193 (301)
T ss_pred EEEEEcCCCcchHHHHHHHHHHcCCceEEEe-------ch-HHHHHHHhCCEEEE
Confidence 4445555555555666666666666666551 22 24455666665554
No 486
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=23.25 E-value=2.7e+02 Score=23.86 Aligned_cols=56 Identities=14% Similarity=0.166 Sum_probs=35.5
Q ss_pred CCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhCCCeEEEEeC
Q psy7291 76 GKDITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKTNYLISVEG 136 (158)
Q Consensus 76 g~~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~~~vvvvEe 136 (158)
|..++|. .|+. .++..++-|.+-|+.+..+...+..|-+.+.+..++. ..++++++
T Consensus 324 Gk~vaI~-~~~~--~~~~la~~l~ElGm~v~~~~~~~~~~~~~~~l~~~~~--~~~~v~~d 379 (475)
T PRK14478 324 GKRVLLY-TGGV--KSWSVVKALQELGMEVVGTSVKKSTDEDKERIKELMG--PDAHMIDD 379 (475)
T ss_pred CCEEEEE-cCCc--hHHHHHHHHHHCCCEEEEEEEECCCHHHHHHHHHHcC--CCcEEEeC
Confidence 6666654 4443 3333455567779999888888777776666666664 34566665
No 487
>COG3046 Uncharacterized protein related to deoxyribodipyrimidine photolyase [General function prediction only]
Probab=23.23 E-value=3.8e+02 Score=23.12 Aligned_cols=58 Identities=12% Similarity=0.142 Sum_probs=43.9
Q ss_pred HHHHHhCCCcEEEEEeccccCCCHHHHHHHHhCC--CeEEEEeCCcCCCChHHHHHHHHHcCCC
Q psy7291 95 AKILAGQGIDAEVINLRSLRPLDIETITKSVMKT--NYLISVEGGWPQCGIGSEISARIMEIPY 156 (158)
Q Consensus 95 ~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~--~~vvvvEe~~~~GG~g~~i~~~l~~~~~ 156 (158)
+++|+.+|.+|..+.+.. .||... |++.++.+ +++.+.|-+. -++-+.+.+.-...|+
T Consensus 59 ad~LraeG~~V~Y~~~~~-~~~~~~-l~~~l~~~~~d~~~~~~p~~--~~l~~~m~~L~~~~g~ 118 (505)
T COG3046 59 ADELRAEGLKVRYERADD-NSFGGE-LRRALEAYPGDRVQVQEPGD--HRLEARMKSLSMALGI 118 (505)
T ss_pred HHHHhhCCceeEEEEcCC-cccchH-HHHHHHhcCCCeEEEecCcc--hhHHHHHHhhhhhcCc
Confidence 578999999999998887 577654 67888866 7898888665 4777777766655554
No 488
>PF11784 DUF3320: Protein of unknown function (DUF3320); InterPro: IPR021754 This family is conserved in Proteobacteria and Chlorobi families. Many members are annotated as being putative DNA helicase-related proteins.
Probab=23.22 E-value=66 Score=18.69 Aligned_cols=25 Identities=8% Similarity=0.163 Sum_probs=20.8
Q ss_pred cccCCHHHHHHHHHHHHhCCCcEEE
Q psy7291 2 VSPYNSEDAKGLLKAAIRDPDPVVF 26 (158)
Q Consensus 2 ~~P~d~~e~~~~l~~a~~~~~P~~i 26 (158)
+.|.....+..++.+.++.++|+-.
T Consensus 5 ~~~~~~~~L~~~i~~Iv~~EgPI~~ 29 (52)
T PF11784_consen 5 YHPEYRPQLARMIRQIVEVEGPIHE 29 (52)
T ss_pred hhhhHHHHHHHHHHHHHHHcCCccH
Confidence 4567778899999999999999875
No 489
>PRK09246 amidophosphoribosyltransferase; Provisional
Probab=23.21 E-value=55 Score=28.35 Aligned_cols=52 Identities=13% Similarity=0.208 Sum_probs=30.9
Q ss_pred CCcEEE----EEechhHHHHHHHHHHHHhCCCcEEEEEeccccC----CCHHHHHHHHhC
Q psy7291 76 GKDITI----VGHSKAVETALDAAKILAGQGIDAEVINLRSLRP----LDIETITKSVMK 127 (158)
Q Consensus 76 g~~~~i----i~~G~~~~~a~ea~~~L~~~gi~~~vi~~~~l~P----ld~~~l~~~~~~ 127 (158)
|+.++| +++|+++..+.+++++...+.+.+.++..+.++| +|...-.+++..
T Consensus 358 gK~VlLVDDvitTGaTl~~~~~~L~~aGA~~V~v~v~ap~i~~pc~ygid~~~~~eLia~ 417 (501)
T PRK09246 358 GKNVLLVDDSIVRGTTSEQIVQMAREAGAKKVYFASAAPPVRFPNVYGIDMPTANELIAH 417 (501)
T ss_pred CCeEEEEeccccccHHHHHHHHHHHHcCCCEEEEEEEccccccCcccccCCCCHHHHhhc
Confidence 666766 6999999887665554433335555555555555 454444455543
No 490
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=23.20 E-value=1.4e+02 Score=28.49 Aligned_cols=33 Identities=18% Similarity=0.132 Sum_probs=26.2
Q ss_pred CCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEec
Q psy7291 76 GKDITIVGHSKAVETALDAAKILAGQGIDAEVINLR 111 (158)
Q Consensus 76 g~~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~ 111 (158)
|.+++||+.|+..-. |+..|..+|.+|++++-.
T Consensus 383 gKKVaVVGaGPAGLs---AA~~La~~Gh~Vtv~E~~ 415 (1028)
T PRK06567 383 NYNILVTGLGPAGFS---LSYYLLRSGHNVTAIDGL 415 (1028)
T ss_pred CCeEEEECcCHHHHH---HHHHHHhCCCeEEEEccc
Confidence 789999999975433 566677789999999864
No 491
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=23.16 E-value=1.3e+02 Score=23.43 Aligned_cols=32 Identities=41% Similarity=0.423 Sum_probs=20.9
Q ss_pred CCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEe
Q psy7291 76 GKDITIVGHSKAVETALDAAKILAGQGIDAEVINL 110 (158)
Q Consensus 76 g~~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~ 110 (158)
..|++||+.|+.-.. |+..|.+.|.++.++.-
T Consensus 17 ~~DV~IVGaGpaGl~---aA~~La~~g~kV~v~E~ 48 (230)
T PF01946_consen 17 EYDVAIVGAGPAGLT---AAYYLAKAGLKVAVIER 48 (230)
T ss_dssp EESEEEE--SHHHHH---HHHHHHHHTS-EEEEES
T ss_pred cCCEEEECCChhHHH---HHHHHHHCCCeEEEEec
Confidence 468999999986544 35567666888888864
No 492
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=23.16 E-value=2.3e+02 Score=23.77 Aligned_cols=33 Identities=12% Similarity=0.350 Sum_probs=25.4
Q ss_pred CCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEec
Q psy7291 76 GKDITIVGHSKAVETALDAAKILAGQGIDAEVINLR 111 (158)
Q Consensus 76 g~~~~ii~~G~~~~~a~ea~~~L~~~gi~~~vi~~~ 111 (158)
..+++||+.|.. ++|.+..|...|.+++++...
T Consensus 166 ~~~vvIIGgG~~---g~E~A~~l~~~g~~Vtli~~~ 198 (463)
T TIGR02053 166 PESLAVIGGGAI---GVELAQAFARLGSEVTILQRS 198 (463)
T ss_pred CCeEEEECCCHH---HHHHHHHHHHcCCcEEEEEcC
Confidence 368999988854 556677788889999999754
No 493
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=23.14 E-value=4.5e+02 Score=22.04 Aligned_cols=38 Identities=26% Similarity=0.482 Sum_probs=27.0
Q ss_pred CCcEEEEEechhHHHHHHHHHHHHhCCC-cEEEEEeccccCC
Q psy7291 76 GKDITIVGHSKAVETALDAAKILAGQGI-DAEVINLRSLRPL 116 (158)
Q Consensus 76 g~~~~ii~~G~~~~~a~ea~~~L~~~gi-~~~vi~~~~l~Pl 116 (158)
+..++||+.|. .+.+++..|...|. +++++..+...++
T Consensus 273 g~~VvViGgG~---~g~e~A~~l~~~G~~~Vtlv~~~~~~~~ 311 (457)
T PRK11749 273 GKRVVVIGGGN---TAMDAARTAKRLGAESVTIVYRRGREEM 311 (457)
T ss_pred CCeEEEECCCH---HHHHHHHHHHHcCCCeEEEeeecCcccC
Confidence 67899999884 45566777777776 7999977543333
No 494
>PLN02465 L-galactono-1,4-lactone dehydrogenase
Probab=23.14 E-value=3.8e+02 Score=23.82 Aligned_cols=27 Identities=15% Similarity=0.155 Sum_probs=24.1
Q ss_pred CcccCCHHHHHHHHHHHHhCCCcEEEE
Q psy7291 1 VVSPYNSEDAKGLLKAAIRDPDPVVFL 27 (158)
Q Consensus 1 V~~P~d~~e~~~~l~~a~~~~~P~~iR 27 (158)
++.|.+.+|+.+++++|.+.+.|+.++
T Consensus 100 vv~P~S~eEV~~iV~~A~~~g~~Vrvv 126 (573)
T PLN02465 100 YHQPESLEELEDIVKEAHEKGRRIRPV 126 (573)
T ss_pred EEEeCCHHHHHHHHHHHHHcCCcEEEE
Confidence 468999999999999999888888886
No 495
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=23.13 E-value=1.3e+02 Score=24.60 Aligned_cols=32 Identities=25% Similarity=0.346 Sum_probs=21.9
Q ss_pred CcEEEEEechhH-HHHHHHHHHHHhCCCcEEEEEecc
Q psy7291 77 KDITIVGHSKAV-ETALDAAKILAGQGIDAEVINLRS 112 (158)
Q Consensus 77 ~~~~ii~~G~~~-~~a~ea~~~L~~~gi~~~vi~~~~ 112 (158)
.|++||+-|.+. ..| -.|.+.|.++.|++-..
T Consensus 2 ~~vvIIGaG~~G~~~A----~~La~~g~~V~vle~~~ 34 (410)
T PRK12409 2 SHIAVIGAGITGVTTA----YALAQRGYQVTVFDRHR 34 (410)
T ss_pred CEEEEECCCHHHHHHH----HHHHHCCCeEEEEeCCC
Confidence 379999988543 333 34555689999997653
No 496
>COG3933 Transcriptional antiterminator [Transcription]
Probab=23.12 E-value=2.9e+02 Score=23.88 Aligned_cols=74 Identities=23% Similarity=0.349 Sum_probs=43.8
Q ss_pred CCcEEEEEech-hHHHHHHHHHHHHhCCCcEEEEEecc-ccCCCH-HHHHHHHhCC----CeEEEEeCCcCCCChHHHHH
Q psy7291 76 GKDITIVGHSK-AVETALDAAKILAGQGIDAEVINLRS-LRPLDI-ETITKSVMKT----NYLISVEGGWPQCGIGSEIS 148 (158)
Q Consensus 76 g~~~~ii~~G~-~~~~a~ea~~~L~~~gi~~~vi~~~~-l~Pld~-~~l~~~~~~~----~~vvvvEe~~~~GG~g~~i~ 148 (158)
.-.++|++.|. ++.-..+++.+|-.+++ +.-+|++. .+|=|- +.+.+.++.. +-++-||.++. -.||+.+.
T Consensus 108 ~v~vIiiAHG~sTASSmaevanrLL~~~~-~~aiDMPLdvsp~~vle~l~e~~k~~~~~~GlllLVDMGSL-~~f~~~i~ 185 (470)
T COG3933 108 RVKVIIIAHGYSTASSMAEVANRLLGEEI-FIAIDMPLDVSPSDVLEKLKEYLKERDYRSGLLLLVDMGSL-TSFGSIIS 185 (470)
T ss_pred ceeEEEEecCcchHHHHHHHHHHHhhccc-eeeecCCCcCCHHHHHHHHHHHHHhcCccCceEEEEecchH-HHHHHHHH
Confidence 34789999996 44555566776655443 33444432 233222 3455555532 46888888874 57787777
Q ss_pred HHH
Q psy7291 149 ARI 151 (158)
Q Consensus 149 ~~l 151 (158)
+.+
T Consensus 186 ~~~ 188 (470)
T COG3933 186 EEF 188 (470)
T ss_pred HHh
Confidence 654
No 497
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=23.10 E-value=3.5e+02 Score=20.93 Aligned_cols=77 Identities=17% Similarity=0.104 Sum_probs=42.7
Q ss_pred CcEEEEEech-hHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHH----HhCC-CeEEEEeCCcCCC-ChHHHHHH
Q psy7291 77 KDITIVGHSK-AVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKS----VMKT-NYLISVEGGWPQC-GIGSEISA 149 (158)
Q Consensus 77 ~~~~ii~~G~-~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~----~~~~-~~vvvvEe~~~~G-G~g~~i~~ 149 (158)
+--+|++.|. ....+.+-++..++.|.+.-++-.+...+.+.+.+.+. ++.. -.|++...-...| .+..++..
T Consensus 66 ~~~vi~gv~~~~~~~~i~~a~~a~~~Gad~v~v~pP~y~~~~~~~~~~~~~~ia~~~~~pi~iYn~P~~tg~~l~~~~~~ 145 (281)
T cd00408 66 RVPVIAGVGANSTREAIELARHAEEAGADGVLVVPPYYNKPSQEGIVAHFKAVADASDLPVILYNIPGRTGVDLSPETIA 145 (281)
T ss_pred CCeEEEecCCccHHHHHHHHHHHHHcCCCEEEECCCcCCCCCHHHHHHHHHHHHhcCCCCEEEEECccccCCCCCHHHHH
Confidence 3445666665 44556666666677788877777777666666554443 3322 3455554433222 34455555
Q ss_pred HHHc
Q psy7291 150 RIME 153 (158)
Q Consensus 150 ~l~~ 153 (158)
.|.+
T Consensus 146 ~L~~ 149 (281)
T cd00408 146 RLAE 149 (281)
T ss_pred HHhc
Confidence 5554
No 498
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=23.09 E-value=2.2e+02 Score=27.13 Aligned_cols=52 Identities=27% Similarity=0.403 Sum_probs=36.5
Q ss_pred CcEEEEEechhH-HH-------HHHHHHHHHhCCCcEEEEEec--------------cccCCCHHHHHHHHhCC
Q psy7291 77 KDITIVGHSKAV-ET-------ALDAAKILAGQGIDAEVINLR--------------SLRPLDIETITKSVMKT 128 (158)
Q Consensus 77 ~~~~ii~~G~~~-~~-------a~ea~~~L~~~gi~~~vi~~~--------------~l~Pld~~~l~~~~~~~ 128 (158)
++++||+.|+.. .. ..++++.|++.|+.+-+++.. .+-|++.+.+.+++++.
T Consensus 7 ~kvlviG~g~~~igq~~e~d~sg~q~~kalke~G~~vi~v~~np~~~~~~~~~aD~~y~~p~~~~~v~~ii~~e 80 (1050)
T TIGR01369 7 KKILVIGSGPIVIGQAAEFDYSGSQACKALKEEGYRVILVNSNPATIMTDPEMADKVYIEPLTPEAVEKIIEKE 80 (1050)
T ss_pred cEEEEECCCcchhcchhcccchHHHHHHHHHHcCCEEEEEecchhhccCChhcCCEEEECCCCHHHHHHHHHHh
Confidence 578889888743 22 345677778889987777654 24478888888888764
No 499
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=23.08 E-value=3e+02 Score=19.89 Aligned_cols=69 Identities=22% Similarity=0.223 Sum_probs=36.8
Q ss_pred cEEEEEec-hhHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhCCC----eEEEEeCCcCCCChHHHHHH
Q psy7291 78 DITIVGHS-KAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKTN----YLISVEGGWPQCGIGSEISA 149 (158)
Q Consensus 78 ~~~ii~~G-~~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~~~----~vvvvEe~~~~GG~g~~i~~ 149 (158)
+++||+-| +....+.++.+.|++-|+.+++ .+...+-.+++ +.++++..+ .+++.=-+. .+++...++.
T Consensus 2 ~V~Ii~gs~SD~~~~~~a~~~L~~~gi~~~~-~V~saHR~p~~-l~~~~~~~~~~~~~viIa~AG~-~a~Lpgvva~ 75 (150)
T PF00731_consen 2 KVAIIMGSTSDLPIAEEAAKTLEEFGIPYEV-RVASAHRTPER-LLEFVKEYEARGADVIIAVAGM-SAALPGVVAS 75 (150)
T ss_dssp EEEEEESSGGGHHHHHHHHHHHHHTT-EEEE-EE--TTTSHHH-HHHHHHHTTTTTESEEEEEEES-S--HHHHHHH
T ss_pred eEEEEeCCHHHHHHHHHHHHHHHHcCCCEEE-EEEeccCCHHH-HHHHHHHhccCCCEEEEEECCC-cccchhhhee
Confidence 35555444 4678899999999999987764 44444444444 455554321 244443333 4566555554
No 500
>PF11821 DUF3341: Protein of unknown function (DUF3341); InterPro: IPR021776 This family of proteins are functionally uncharacterised. This family is found in bacteria. Proteins in this family are about 170 amino acids in length.
Probab=23.04 E-value=1.2e+02 Score=22.39 Aligned_cols=37 Identities=19% Similarity=0.328 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHHHhCCCcEEEEEeccccCCCHHHHHHHHhC
Q psy7291 87 AVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMK 127 (158)
Q Consensus 87 ~~~~a~ea~~~L~~~gi~~~vi~~~~l~Pld~~~l~~~~~~ 127 (158)
.-...++|+++++++|. +.+++. .|+|-..+.+.+..
T Consensus 11 ~~~~l~~A~~~~r~~G~--~~~d~y--tPfPvhgld~alg~ 47 (173)
T PF11821_consen 11 DPEALLHAARKLRDAGY--RIWDVY--TPFPVHGLDEALGL 47 (173)
T ss_pred CHHHHHHHHHHHHHcCC--ceeEEe--CCCcCcCHHHHhCC
Confidence 34677889999999886 566655 47766777777754
Done!