RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7291
(158 letters)
>2ozl_B PDHE1-B, pyruvate dehydrogenase E1 component subunit beta;
pyruvate_dehydrogenase_complex, human,
multienzyme_complex_component; HET: TPP; 1.90A {Homo
sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1ni4_B* 3exe_B*
3exf_B* 3exg_B 3exh_B* 3exi_B
Length = 341
Score = 226 bits (579), Expect = 4e-75
Identities = 88/153 (57%), Positives = 116/153 (75%), Gaps = 15/153 (9%)
Query: 1 VVSPYNSEDAKGLLKAAIRDPDPVVFLENELLYGVQYPMGDEALSKDFVLPIGKAKVEKQ 60
VVSP+NSEDAKGL+K+AIRD +PVV LENEL+YGV + EA SKDF++PIGKAK+E+Q
Sbjct: 156 VVSPWNSEDAKGLIKSAIRDNNPVVVLENELMYGVPFEFPPEAQSKDFLIPIGKAKIERQ 215
Query: 61 GEAFYHLDAPVIRVTGKDITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIET 120
G IT+V HS+ V L+AA +L+ +G++ EVIN+R++RP+D+ET
Sbjct: 216 G---------------THITVVSHSRPVGHCLEAAAVLSKEGVECEVINMRTIRPMDMET 260
Query: 121 ITKSVMKTNYLISVEGGWPQCGIGSEISARIME 153
I SVMKTN+L++VEGGWPQ G+G+EI ARIME
Sbjct: 261 IEASVMKTNHLVTVEGGWPQFGVGAEICARIME 293
Score = 38.3 bits (90), Expect = 4e-04
Identities = 12/20 (60%), Positives = 15/20 (75%)
Query: 60 QGEAFYHLDAPVIRVTGKDI 79
+G AF LDAP +RVTG D+
Sbjct: 293 EGPAFNFLDAPAVRVTGADV 312
>1w85_B Pyruvate dehydrogenase E1 component, beta subunit; dehydrogenase,
multienzyme complex, oxidoreductase; HET: TDP; 2.0A
{Geobacillus stearothermophilus} SCOP: c.36.1.7 c.48.1.2
PDB: 1w88_B* 3dva_B* 3dv0_B* 3duf_B*
Length = 324
Score = 173 bits (440), Expect = 2e-54
Identities = 64/153 (41%), Positives = 86/153 (56%), Gaps = 18/153 (11%)
Query: 1 VVSPYNSEDAKGLLKAAIRDPDPVVFLENELLYGVQYPMGDEALSKDFVLPIGKAKVEKQ 60
VV P DAKGLL +AIRD DPV+FLE+ LY E ++ +PIGKA ++++
Sbjct: 144 VVIPSTPYDAKGLLISAIRDNDPVIFLEHLKLYR---SFRQEVPEGEYTIPIGKADIKRE 200
Query: 61 GEAFYHLDAPVIRVTGKDITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIET 120
G KDITI+ + V +L AA L +GI AEV++LR+++PLDIET
Sbjct: 201 G---------------KDITIIAYGAMVHESLKAAAELEKEGISAEVVDLRTVQPLDIET 245
Query: 121 ITKSVMKTNYLISVEGGWPQCGIGSEISARIME 153
I SV KT I V+ Q GI + + A I E
Sbjct: 246 IIGSVEKTGRAIVVQEAQRQAGIAANVVAEINE 278
Score = 40.2 bits (95), Expect = 1e-04
Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 60 QGEAFYHLDAPVIRVTGKDITIVGHSKAVETAL-DAAKILAG 100
A L+APV+RV D T+ ++A L + ++
Sbjct: 277 NERAILSLEAPVLRVAAPD-TVYPFAQAESVWLPNFKDVIET 317
>1umd_B E1-beta, 2-OXO acid dehydrogenase beta subunit; alpha(2)beta(2)
tetramer, structural genomics; HET: TDP; 1.90A {Thermus
thermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1um9_B*
1umc_B* 1umb_B*
Length = 324
Score = 171 bits (437), Expect = 7e-54
Identities = 60/153 (39%), Positives = 83/153 (54%), Gaps = 18/153 (11%)
Query: 1 VVSPYNSEDAKGLLKAAIRDPDPVVFLENELLYGVQYPMGDEALSKDFVLPIGKAKVEKQ 60
VV+ DAKGLLKAAIRD DPVVFLE + LY + +E +D+ LPIGKA + ++
Sbjct: 145 VVAVSTPYDAKGLLKAAIRDEDPVVFLEPKRLYR---SVKEEVPEEDYTLPIGKAALRRE 201
Query: 61 GEAFYHLDAPVIRVTGKDITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIET 120
G KD+T++ + + L AA LA G+ AEV++LR+L P D E
Sbjct: 202 G---------------KDLTLICYGTVMPEVLQAAAELAKAGVSAEVLDLRTLMPWDYEA 246
Query: 121 ITKSVMKTNYLISVEGGWPQCGIGSEISARIME 153
+ SV KT ++ V SE++A I E
Sbjct: 247 VMNSVAKTGRVVLVSDAPRHASFVSEVAATIAE 279
Score = 40.2 bits (95), Expect = 1e-04
Identities = 12/41 (29%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 60 QGEAFYHLDAPVIRVTGKDITIVGHSKAVETALDAAKILAG 100
+ L AP IRVTG D T +++ +IL
Sbjct: 278 AEDLLDMLLAPPIRVTGFD-TPYPYAQDKLYLPTVTRILNA 317
>1ik6_A Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, oxidoreductase;
2.00A {Pyrobaculum aerophilum} SCOP: c.36.1.7 c.48.1.2
Length = 369
Score = 160 bits (408), Expect = 4e-49
Identities = 59/153 (38%), Positives = 84/153 (54%), Gaps = 21/153 (13%)
Query: 1 VVSPYNSEDAKGLLKAAIRDPDPVVFLENELLYGVQYPMGDEALSKDFVLPIGKAKVEKQ 60
VV P +AKGLLKAAIR DPVVFLE ++LY +E D+V+ IGKA+V ++
Sbjct: 192 VVMPSTPYNAKGLLKAAIRGDDPVVFLEPKILYRA---PREEVPEGDYVVEIGKARVARE 248
Query: 61 GEAFYHLDAPVIRVTGKDITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIET 120
G D+T+V + V AL+AA+ + EV++L++L PLD +T
Sbjct: 249 G---------------DDVTLVTYGAVVHKALEAAERV---KASVEVVDLQTLNPLDFDT 290
Query: 121 ITKSVMKTNYLISVEGGWPQCGIGSEISARIME 153
+ KSV KT LI G+G+E+ A + E
Sbjct: 291 VLKSVSKTGRLIIAHDSPKTGGLGAEVRALVAE 323
Score = 38.0 bits (89), Expect = 5e-04
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 62 EAFYHLDAPVIRVTGKDITI 81
+A L APVIR+ G D+
Sbjct: 324 KALDRLTAPVIRLAGPDVPQ 343
>2bfd_B 2-oxoisovalerate dehydrogenase beta subunit; oxidoreductase,
multi-enzyme complex, acylation, oxidative
decarboxylation, maple syrup urine disease; HET: TDP;
1.39A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB:
1dtw_B* 1olu_B* 1ols_B* 1v11_B* 1v16_B* 1v1m_B* 1u5b_B*
1wci_B* 1v1r_B* 1x7x_B* 1x7w_B* 1x7z_B* 1x80_B* 2beu_B*
2bev_B* 2bew_B* 2bfb_B* 2bfc_B* 1x7y_B* 2bfe_B* ...
Length = 342
Score = 160 bits (406), Expect = 4e-49
Identities = 47/154 (30%), Positives = 77/154 (50%), Gaps = 19/154 (12%)
Query: 1 VVSPYNSEDAKGLLKAAIRDPDPVVFLENELLYGVQYPMGDEALSKDFVLPIGKAKVEKQ 60
VV P + AKGLL + I D +P +F E ++LY +E + + +P+ +A+V ++
Sbjct: 162 VVIPRSPFQAKGLLLSCIEDKNPCIFFEPKILY---RAAAEEVPIEPYNIPLSQAEVIQE 218
Query: 61 GEAFYHLDAPVIRVTGKDITIVGHSKAVETALDAAKILAGQ-GIDAEVINLRSLRPLDIE 119
G D+T+V V + A + + G+ EVI+LR++ P D++
Sbjct: 219 G---------------SDVTLVAWGTQVHVIREVASMAKEKLGVSCEVIDLRTIIPWDVD 263
Query: 120 TITKSVMKTNYLISVEGGWPQCGIGSEISARIME 153
TI KSV+KT L+ G SEIS+ + E
Sbjct: 264 TICKSVIKTGRLLISHEAPLTGGFASEISSTVQE 297
Score = 37.9 bits (89), Expect = 5e-04
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 62 EAFYHLDAPVIRVTGKDITI 81
E F +L+AP+ RV G D
Sbjct: 298 ECFLNLEAPISRVCGYDTPF 317
>1qs0_B 2-oxoisovalerate dehydrogenase beta-subunit; heterotetramer, THDP
cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas
putida} SCOP: c.36.1.7 c.48.1.2 PDB: 2bp7_B
Length = 338
Score = 154 bits (392), Expect = 5e-47
Identities = 53/166 (31%), Positives = 78/166 (46%), Gaps = 31/166 (18%)
Query: 1 VVSPYNSEDAKGLLKAAIRDPDPVVFLENELLYGVQYPMGDEALSK-------------D 47
V P N DAKGLL A+I DPV+FLE + LY + +
Sbjct: 146 TVMPSNPYDAKGLLIASIECDDPVIFLEPKRLYNGPFDGHHDRPVTPWSKHPHSAVPDGY 205
Query: 48 FVLPIGKAKVEKQGEAFYHLDAPVIRVTGKDITIVGHSKAVETALDAAKILAGQGIDAEV 107
+ +P+ KA + + G D++++ + V A AA G+DAEV
Sbjct: 206 YTVPLDKAAITRPG---------------NDVSVLTYGTTVYVAQVAA---EESGVDAEV 247
Query: 108 INLRSLRPLDIETITKSVMKTNYLISVEGGWPQCGIGSEISARIME 153
I+LRSL PLD++TI +SV KT + V CG G+E+ + + E
Sbjct: 248 IDLRSLWPLDLDTIVESVKKTGRCVVVHEATRTCGFGAELVSLVQE 293
Score = 39.5 bits (93), Expect = 2e-04
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 62 EAFYHLDAPVIRVTGKDITIVGHSKAVETALDAAKILAG 100
F+HL+AP+ RVTG D T H++ +++ A
Sbjct: 294 HCFHHLEAPIERVTGWD-TPYPHAQEWAYFPGPSRVGAA 331
>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS,
transferase; HET: TDP; 2.90A {Deinococcus radiodurans}
Length = 629
Score = 60.2 bits (147), Expect = 1e-11
Identities = 37/156 (23%), Positives = 61/156 (39%), Gaps = 31/156 (19%)
Query: 1 VVSPYNSEDAKGLLKAAIRDPDPVVFLENELLYGVQYPMG---DEALSKDFVLPIGKAKV 57
+ P ++ + +G+LK A P ++YP G L G+ +
Sbjct: 451 IGLPKDAAELRGMLKYAQTHDGPFA---------IRYPRGNTAQVPAGTWPDLKWGEWER 501
Query: 58 EKQGEAFYHLDAPVIRVTGKDITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLD 117
K G D+ I+ KA++ AL AA+ L G G V+N R ++PLD
Sbjct: 502 LKGG---------------DDVVILAGGKALDYALKAAEDLPGVG----VVNARFVKPLD 542
Query: 118 IETITKSVMKTNYLISVEGGWPQCGIGSEISARIME 153
E + + + LI+VE G G + +
Sbjct: 543 EEMLREVGGRARALITVEDNTVVGGFGGAVLEALNS 578
>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis
sugar metaboli transferase; HET: TPP; 1.75A {Homo
sapiens} PDB: 3ooy_A*
Length = 616
Score = 59.9 bits (146), Expect = 2e-11
Identities = 25/106 (23%), Positives = 52/106 (49%), Gaps = 14/106 (13%)
Query: 47 DFVLPIGKAKVEKQGEAFYHLDAPVIRVTGKDITIVGHSKAVETALDAAKILAGQGIDAE 106
+ +G+AKV + + +T++G + AL AA++L + I+
Sbjct: 482 NEDFQVGQAKVVLKSK-------------DDQVTVIGAGVTLHEALAAAELLKKEKINIR 528
Query: 107 VINLRSLRPLDIETITKSVMKT-NYLISVEGGWPQCGIGSEISARI 151
V++ +++PLD + I S T +++VE + + GIG +S+ +
Sbjct: 529 VLDPFTIKPLDRKLILDSARATKGRILTVEDHYYEGGIGEAVSSAV 574
>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid,
transferase; HET: TDP; 2.40A {Escherichia coli}
Length = 621
Score = 56.8 bits (138), Expect = 3e-10
Identities = 28/122 (22%), Positives = 52/122 (42%), Gaps = 23/122 (18%)
Query: 35 VQYPMG---DEALSKDFVLPIGKAKVEKQGEAFYHLDAPVIRVTGKDITIVGHSKAVETA 91
V+YP G L+ LPIGK V+++G + + I+ + A
Sbjct: 474 VRYPRGNAVGVELTPLEKLPIGKGIVKRRG---------------EKLAILNFGTLMPEA 518
Query: 92 LDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKTNYLISVEGGWPQCGIGSEISARI 151
A + ++A ++++R ++PLD I + L++VE G GS ++ +
Sbjct: 519 AKVA-----ESLNATLVDMRFVKPLDEALILEMAASHEALVTVEENAIMGGAGSGVNEVL 573
Query: 152 ME 153
M
Sbjct: 574 MA 575
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 42.0 bits (98), Expect = 3e-05
Identities = 26/121 (21%), Positives = 48/121 (39%), Gaps = 22/121 (18%)
Query: 14 LKAAIRDPDPVVFLENELLYGVQYPMGDEALSKDFVLPIGKAKVEKQG--EAFYHLDAPV 71
+++ + VVF + V P + S ++ I +V EA ++ V
Sbjct: 1779 IESLVE----VVFYRGMTMQ-VAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERV 1833
Query: 72 IRVTGKDITIV------------GHSKAVETALDAAKILAGQGIDAEVINLR-SLRPLDI 118
+ TG + IV G +A++T + + Q ID +I L+ SL ++
Sbjct: 1834 GKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKID--IIELQKSLSLEEV 1891
Query: 119 E 119
E
Sbjct: 1892 E 1892
>3ju3_A Probable 2-oxoacid ferredoxin oxidoreductase, ALP; structural
genomics, PSI-2, protein structu initiative; 1.90A
{Thermoplasma acidophilum}
Length = 118
Score = 35.4 bits (82), Expect = 0.002
Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 3/73 (4%)
Query: 68 DAPVIRVTGK---DITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKS 124
+A + G+ DIT V LD + L +GI A ++ L+ P E +
Sbjct: 2 NAEKAVLIGEKEADITFVTWGSQKGPILDVIEDLKEEGISANLLYLKMFSPFPTEFVKNV 61
Query: 125 VMKTNYLISVEGG 137
+ N +I VE
Sbjct: 62 LSSANLVIDVESN 74
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur,
iron-sulfur cluster, pyruvate catabolism, TPP-dependent
enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP:
c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB:
1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A*
2pda_A* 2uza_A*
Length = 1231
Score = 33.3 bits (76), Expect = 0.025
Identities = 12/51 (23%), Positives = 21/51 (41%)
Query: 78 DITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKT 128
+ IV + ET + LA +G +I +R RP E ++ +
Sbjct: 269 ERVIVSMGSSCETIEEVINHLAAKGEKIGLIKVRLYRPFVSEAFFAALPAS 319
>1yd7_A 2-keto acid:ferredoxin oxidoreductase subunit alpha; structural
genomics, southeast collaboratory for structural
genomics, secsg; 2.30A {Pyrococcus furiosus}
Length = 395
Score = 30.6 bits (70), Expect = 0.16
Identities = 16/58 (27%), Positives = 29/58 (50%)
Query: 78 DITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKTNYLISVE 135
+I +V +AL A K+L +GI A ++ + ++ P D E I + + + L E
Sbjct: 293 EIGVVATGIVARSALRAVKMLREEGIKAGLLKIETIWPFDFELIERIAERVDKLYVPE 350
>3bh1_A UPF0371 protein DIP2346; structural genomics, unknown function,
protein structure INI PSI-2; 2.51A {Corynebacterium
diphtheriae nctc 13129ORGANISM_TAXID}
Length = 507
Score = 30.5 bits (69), Expect = 0.19
Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 9/60 (15%)
Query: 74 VTGKDITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKTNYLIS 133
+TG ++G S ++ L+A K LA GID I+L L P IE I +KT +L S
Sbjct: 374 ITGATSDLLGCSSSM--LLNALKHLA--GIDDA-IHL--LSPESIEPIQT--LKTVHLGS 424
>3kom_A Transketolase; rossmann fold, csgid, transferase, structural
genomics, center for structural genomics of infectious
DISE; HET: MSE; 1.60A {Francisella tularensis subsp}
Length = 663
Score = 30.5 bits (70), Expect = 0.22
Identities = 10/33 (30%), Positives = 13/33 (39%)
Query: 76 GKDITIVGHSKAVETALDAAKILAGQGIDAEVI 108
+TIV VE A+ A +GI V
Sbjct: 549 DAKLTIVATGSEVELAVKVANEFEKKGIKLNVA 581
>3l84_A Transketolase; TKT, structural genomics, center for structur
genomics of infectious diseases, csgid, transferase;
HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A*
3m34_A* 3m7i_A*
Length = 632
Score = 30.1 bits (69), Expect = 0.27
Identities = 8/31 (25%), Positives = 13/31 (41%)
Query: 78 DITIVGHSKAVETALDAAKILAGQGIDAEVI 108
T++ V L++A L QG V+
Sbjct: 527 KFTLLASGSEVWLCLESANELEKQGFACNVV 557
>3uk1_A Transketolase; structural genomics, seattle structural genomics
center for infectious disease, ssgcid, thiamine
pyrophosphate; 2.15A {Burkholderia thailandensis} PDB:
3upt_A*
Length = 711
Score = 29.8 bits (68), Expect = 0.32
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 78 DITIVGHSKAVETALDAAKILAGQGIDAEVI 108
I ++ VE A+ A + LA QGI A V+
Sbjct: 599 KIILIATGSEVELAMKAVEPLAQQGIAARVV 629
>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium,
metal-binding, thiamine pyrophosphate, transferase; HET:
T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6
c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A*
Length = 669
Score = 29.8 bits (68), Expect = 0.43
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 88 VETALDAAKILAGQGIDAEVI 108
VE A+ A + L +G+ A V+
Sbjct: 561 VELAVAAYEKLTAEGVKARVV 581
>2e6k_A Transketolase; structural genomics, NPPSFA, national project
protein structural and functional analyses; 2.09A
{Thermus thermophilus}
Length = 651
Score = 29.4 bits (67), Expect = 0.52
Identities = 8/31 (25%), Positives = 13/31 (41%)
Query: 78 DITIVGHSKAVETALDAAKILAGQGIDAEVI 108
+V V AL A +L +G+ V+
Sbjct: 543 QGVLVATGSEVHLALRAQALLREKGVRVRVV 573
>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate,
plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP:
c.36.1.6 c.36.1.10 c.48.1.1
Length = 675
Score = 29.4 bits (67), Expect = 0.57
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 78 DITIVGHSKAVETALDAAKILAGQGIDAEVI 108
D+ ++G +E A AA L +G V+
Sbjct: 564 DLIVMGTGSELEIAAKAADELRKEGKTVRVV 594
>3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium
tuberculosis}
Length = 700
Score = 29.0 bits (66), Expect = 0.64
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 88 VETALDAAKILAGQGIDAEVI 108
V+ A+ A +LA I A V+
Sbjct: 596 VQLAVAAQTLLADNDILARVV 616
>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A
{Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10
c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A*
1tkc_A*
Length = 680
Score = 29.0 bits (66), Expect = 0.66
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 78 DITIVGHSKAVETALDAAKILAGQGIDAEVI 108
DI +V V +++AAK LA + I A V+
Sbjct: 556 DIILVATGSEVSLSVEAAKTLAAKNIKARVV 586
>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A
{Mycobacterium smegmatis}
Length = 1113
Score = 29.1 bits (66), Expect = 0.67
Identities = 13/22 (59%), Positives = 15/22 (68%), Gaps = 2/22 (9%)
Query: 93 DAAKILAGQGIDAEVINLRSLR 114
DAA AGQG+ AE +NL LR
Sbjct: 531 DAA--FAGQGVVAETLNLALLR 550
>3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase,
structural genomics, center for structural genomics of
infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A
{Bacillus anthracis} PDB: 3hyl_A*
Length = 690
Score = 29.0 bits (66), Expect = 0.68
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 88 VETALDAAKILAGQGIDAEVI 108
V A++A K LA G+DA V+
Sbjct: 588 VSLAVEAQKALAVDGVDASVV 608
>2jgd_A 2-oxoglutarate dehydrogenase E1 component; flavoprotein,
oxidoreductase, thiamine diphosphate, thiamine
pyrophosphate, adenosine monophosphate; HET: AMP; 2.6A
{Escherichia coli} PDB: 2jgd_B*
Length = 933
Score = 29.1 bits (66), Expect = 0.72
Identities = 9/22 (40%), Positives = 13/22 (59%), Gaps = 2/22 (9%)
Query: 93 DAAKILAGQGIDAEVINLRSLR 114
DAA + GQG+ E +N+ R
Sbjct: 357 DAA--VTGQGVVQETLNMSKAR 376
>2yic_A 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.96A {Mycobacterium
smegmatis} PDB: 2xta_A* 2y0p_A* 2xt9_A* 2yid_A*
Length = 868
Score = 29.1 bits (66), Expect = 0.75
Identities = 13/22 (59%), Positives = 15/22 (68%), Gaps = 2/22 (9%)
Query: 93 DAAKILAGQGIDAEVINLRSLR 114
DAA AGQG+ AE +NL LR
Sbjct: 286 DAA--FAGQGVVAETLNLALLR 305
>2z0f_A Putative phosphoglucomutase; isomerase, magnesium, metal-binding,
structural genomics; 2.52A {Thermus thermophilus}
Length = 524
Score = 27.6 bits (62), Expect = 1.7
Identities = 9/51 (17%), Positives = 15/51 (29%), Gaps = 4/51 (7%)
Query: 69 APVIRVTGKDITIV----GHSKAVETALDAAKILAGQGIDAEVINLRSLRP 115
A + G + H+ + A + A GI+ V P
Sbjct: 53 AELRPSFGATGPLFLAKDTHALSEPAWATALSVFAAHGIEVRVEADGDYTP 103
>3dgt_A Endo-1,3-beta-glucanase; GHF16, hydrolase, 1; 1.50A {Streptomyces
sioyaensis}
Length = 280
Score = 25.9 bits (57), Expect = 6.7
Identities = 7/21 (33%), Positives = 8/21 (38%), Gaps = 5/21 (23%)
Query: 133 SVEGGWPQCGIGSEISARIME 153
WP G E+ IME
Sbjct: 132 GNYQNWPGVG---ELD--IME 147
>3ryc_A Tubulin alpha chain; alpha-tubulin, beta-tubulin, GTPase,
microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A
{Ovis aries} PDB: 3ryf_A* 3ryh_A* 3ryi_A* 3hke_A*
3hkc_A* 3hkd_A* 3hkb_A* 3n2g_A* 3n2k_A* 1sa0_A* 1sa1_A*
3edl_F* 1ffx_A* 1ia0_A* 2hxf_A* 2hxh_A* 2p4n_A* 1jff_A*
2wbe_A* 3dco_A* ...
Length = 451
Score = 25.5 bits (56), Expect = 9.4
Identities = 10/33 (30%), Positives = 14/33 (42%), Gaps = 3/33 (9%)
Query: 1 VVSPYNSEDAKGLLKAAIRDPDPVVFLENELLY 33
VV PYNS + D ++NE +Y
Sbjct: 181 VVEPYNSILT---THTTLEHSDCAFMVDNEAIY 210
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.136 0.385
Gapped
Lambda K H
0.267 0.0815 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,457,085
Number of extensions: 150732
Number of successful extensions: 610
Number of sequences better than 10.0: 1
Number of HSP's gapped: 591
Number of HSP's successfully gapped: 59
Length of query: 158
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 72
Effective length of database: 4,300,587
Effective search space: 309642264
Effective search space used: 309642264
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.0 bits)