RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7291
(158 letters)
>d2ozlb1 c.36.1.7 (B:0-191) E1-beta subunit of pyruvate
dehydrogenase, Pyr module {Human (Homo sapiens) [TaxId:
9606]}
Length = 192
Score = 69.7 bits (170), Expect = 4e-16
Identities = 34/48 (70%), Positives = 40/48 (83%)
Query: 1 VVSPYNSEDAKGLLKAAIRDPDPVVFLENELLYGVQYPMGDEALSKDF 48
VVSP+NSEDAKGL+K+AIRD +PVV LENEL+YGV + EA SKDF
Sbjct: 145 VVSPWNSEDAKGLIKSAIRDNNPVVVLENELMYGVPFEFPPEAQSKDF 192
>d1qs0b1 c.36.1.7 (B:2-205) 2-oxoisovalerate dehydrogenase (E1B),
Pyr module {Pseudomonas putida [TaxId: 303]}
Length = 204
Score = 65.9 bits (160), Expect = 1e-14
Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 6/59 (10%)
Query: 1 VVSPYNSEDAKGLLKAAIRDPDPVVFLENELLYGVQY------PMGDEALSKDFVLPIG 53
V P N DAKGLL A+I DPV+FLE + LY + P+ + +P G
Sbjct: 146 TVMPSNPYDAKGLLIASIECDDPVIFLEPKRLYNGPFDGHHDRPVTPWSKHPHSAVPDG 204
>d1umdb2 c.48.1.2 (B:188-324) Branched-chain alpha-keto acid
dehydrogenase {Thermus thermophilus [TaxId: 274]}
Length = 137
Score = 58.2 bits (140), Expect = 3e-12
Identities = 36/107 (33%), Positives = 54/107 (50%), Gaps = 15/107 (14%)
Query: 47 DFVLPIGKAKVEKQGEAFYHLDAPVIRVTGKDITIVGHSKAVETALDAAKILAGQGIDAE 106
D+ LPIGKA + ++G KD+T++ + + L AA LA G+ AE
Sbjct: 1 DYTLPIGKAALRREG---------------KDLTLICYGTVMPEVLQAAAELAKAGVSAE 45
Query: 107 VINLRSLRPLDIETITKSVMKTNYLISVEGGWPQCGIGSEISARIME 153
V++LR+L P D E + SV KT ++ V SE++A I E
Sbjct: 46 VLDLRTLMPWDYEAVMNSVAKTGRVVLVSDAPRHASFVSEVAATIAE 92
Score = 32.8 bits (74), Expect = 0.006
Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 62 EAFYHLDAPVIRVTGKDITIVGHSKAVETALDAAKILA 99
+ L AP IRVTG D T +++ +IL
Sbjct: 93 DLLDMLLAPPIRVTGFD-TPYPYAQDKLYLPTVTRILN 129
>d1qs0b2 c.48.1.2 (B:206-339) 2-oxoisovalerate dehydrogenase E1b,
C-domain {Pseudomonas putida [TaxId: 303]}
Length = 134
Score = 56.6 bits (136), Expect = 1e-11
Identities = 32/110 (29%), Positives = 53/110 (48%), Gaps = 18/110 (16%)
Query: 48 FVLPIGKAKVEKQGEAFYHLDAPVIRVTGKDITIVGHSKAVETALDAAKILAGQGIDAEV 107
+ +P+ KA + + G D++++ + V A G+DAEV
Sbjct: 2 YTVPLDKAAITRPG---------------NDVSVLTYGTTVYVAQ---VAAEESGVDAEV 43
Query: 108 INLRSLRPLDIETITKSVMKTNYLISVEGGWPQCGIGSEISARIMEIPYS 157
I+LRSL PLD++TI +SV KT + V CG G+E+ + + E +
Sbjct: 44 IDLRSLWPLDLDTIVESVKKTGRCVVVHEATRTCGFGAELVSLVQEHCFH 93
Score = 32.8 bits (74), Expect = 0.007
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 63 AFYHLDAPVIRVTGKDITIVGHSKAVETALDAAKILA 99
F+HL+AP+ RVTG D T H++ +++ A
Sbjct: 91 CFHHLEAPIERVTGWD-TPYPHAQEWAYFPGPSRVGA 126
>d2bfdb1 c.36.1.7 (B:2-204) Branched-chain alpha-keto acid
dehydrogenase, Pyr module {Human (Homo sapiens) [TaxId:
9606]}
Length = 203
Score = 57.9 bits (139), Expect = 1e-11
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 1 VVSPYNSEDAKGLLKAAIRDPDPVVFLENELLYG 34
VV P + AKGLL + I D +P +F E ++LY
Sbjct: 161 VVIPRSPFQAKGLLLSCIEDKNPCIFFEPKILYR 194
>d2bfdb2 c.48.1.2 (B:205-342) Branched-chain alpha-keto acid
dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}
Length = 138
Score = 56.3 bits (135), Expect = 2e-11
Identities = 30/106 (28%), Positives = 50/106 (47%), Gaps = 16/106 (15%)
Query: 48 FVLPIGKAKVEKQGEAFYHLDAPVIRVTGKDITIVGHSKAVETALDAAK-ILAGQGIDAE 106
+ +P+ +A+V ++ G D+T+V V + A G+ E
Sbjct: 2 YNIPLSQAEVIQE---------------GSDVTLVAWGTQVHVIREVASMAKEKLGVSCE 46
Query: 107 VINLRSLRPLDIETITKSVMKTNYLISVEGGWPQCGIGSEISARIM 152
VI+LR++ P D++TI KSV+KT L+ G SEIS+ +
Sbjct: 47 VIDLRTIIPWDVDTICKSVIKTGRLLISHEAPLTGGFASEISSTVQ 92
Score = 30.5 bits (68), Expect = 0.040
Identities = 14/40 (35%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Query: 60 QGEAFYHLDAPVIRVTGKDITIVGHSKAVETALDAAKILA 99
Q E F +L+AP+ RV G D T H D K
Sbjct: 92 QEECFLNLEAPISRVCGYD-TPFPHIFEPFYIPDKWKCYD 130
>d1w85b1 c.36.1.7 (B:1-192) Pyruvate dehydrogenase E1-beta, PdhB,
N-terminal domain {Bacillus stearothermophilus [TaxId:
1422]}
Length = 192
Score = 57.0 bits (137), Expect = 2e-11
Identities = 24/52 (46%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Query: 1 VVSPYNSEDAKGLLKAAIRDPDPVVFLENELLYGVQYPMGDEALSKDFVLPI 52
VV P DAKGLL +AIRD DPV+FLE+ LY E ++ +PI
Sbjct: 144 VVIPSTPYDAKGLLISAIRDNDPVIFLEHLKLY---RSFRQEVPEGEYTIPI 192
>d1ik6a1 c.36.1.7 (A:1-191) E1-beta subunit of pyruvate
dehydrogenase, Pyr module {Archaeon Pyrobaculum
aerophilum [TaxId: 13773]}
Length = 191
Score = 56.3 bits (135), Expect = 4e-11
Identities = 22/33 (66%), Positives = 25/33 (75%)
Query: 1 VVSPYNSEDAKGLLKAAIRDPDPVVFLENELLY 33
VV P +AKGLLKAAIR DPVVFLE ++LY
Sbjct: 149 VVMPSTPYNAKGLLKAAIRGDDPVVFLEPKILY 181
>d1w85b2 c.48.1.2 (B:193-324) Pyruvate dehydrogenase E1-beta, PdhB,
C-terminal domain {Bacillus stearothermophilus [TaxId:
1422]}
Length = 132
Score = 55.2 bits (132), Expect = 4e-11
Identities = 40/104 (38%), Positives = 56/104 (53%), Gaps = 15/104 (14%)
Query: 53 GKAKVEKQGEAFYHLDAPVIRVTGKDITIVGHSKAVETALDAAKILAGQGIDAEVINLRS 112
GKA ++++G KDITI+ + V +L AA L +GI AEV++LR+
Sbjct: 1 GKADIKREG---------------KDITIIAYGAMVHESLKAAAELEKEGISAEVVDLRT 45
Query: 113 LRPLDIETITKSVMKTNYLISVEGGWPQCGIGSEISARIMEIPY 156
++PLDIETI SV KT I V+ Q GI + + A I E
Sbjct: 46 VQPLDIETIIGSVEKTGRAIVVQEAQRQAGIAANVVAEINERAI 89
Score = 26.6 bits (58), Expect = 0.80
Identities = 11/38 (28%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 63 AFYHLDAPVIRVTGKDITIVGHSKAVETAL-DAAKILA 99
A L+APV+RV D T+ ++A L + ++
Sbjct: 88 AILSLEAPVLRVAAPD-TVYPFAQAESVWLPNFKDVIE 124
>d2ozlb2 c.48.1.2 (B:192-329) E1-beta subunit of pyruvate
dehydrogenase, C-domain {Human (Homo sapiens) [TaxId:
9606]}
Length = 138
Score = 54.0 bits (129), Expect = 1e-10
Identities = 53/103 (51%), Positives = 74/103 (71%), Gaps = 15/103 (14%)
Query: 50 LPIGKAKVEKQGEAFYHLDAPVIRVTGKDITIVGHSKAVETALDAAKILAGQGIDAEVIN 109
+PIGKAK+E+QG IT+V HS+ V L+AA +L+ +G++ EVIN
Sbjct: 2 IPIGKAKIERQG---------------THITVVSHSRPVGHCLEAAAVLSKEGVECEVIN 46
Query: 110 LRSLRPLDIETITKSVMKTNYLISVEGGWPQCGIGSEISARIM 152
+R++RP+D+ETI SVMKTN+L++VEGGWPQ G+G+EI ARIM
Sbjct: 47 MRTIRPMDMETIEASVMKTNHLVTVEGGWPQFGVGAEICARIM 89
Score = 30.5 bits (68), Expect = 0.042
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Query: 62 EAFYHLDAPVIRVTGKDITIVGHSKAVETA--LDAAKILA 99
AF LDAP +RVTG D + ++K +E I+
Sbjct: 92 PAFNFLDAPAVRVTGAD-VPMPYAKILEDNSIPQVKDIIF 130
>d1ik6a2 c.48.1.2 (A:192-326) E1-beta subunit of pyruvate
dehydrogenase, C-domain {Archaeon Pyrobaculum aerophilum
[TaxId: 13773]}
Length = 135
Score = 52.1 bits (124), Expect = 6e-10
Identities = 36/107 (33%), Positives = 57/107 (53%), Gaps = 18/107 (16%)
Query: 47 DFVLPIGKAKVEKQGEAFYHLDAPVIRVTGKDITIVGHSKAVETALDAAKILAGQGIDAE 106
D+V+ IGKA+V ++ G D+T+V + V AL+AA+ + E
Sbjct: 1 DYVVEIGKARVARE---------------GDDVTLVTYGAVVHKALEAAERV---KASVE 42
Query: 107 VINLRSLRPLDIETITKSVMKTNYLISVEGGWPQCGIGSEISARIME 153
V++L++L PLD +T+ KSV KT LI G+G+E+ A + E
Sbjct: 43 VVDLQTLNPLDFDTVLKSVSKTGRLIIAHDSPKTGGLGAEVRALVAE 89
Score = 27.1 bits (59), Expect = 0.65
Identities = 11/38 (28%), Positives = 17/38 (44%)
Query: 62 EAFYHLDAPVIRVTGKDITIVGHSKAVETALDAAKILA 99
+A L APVIR+ G D+ + A +I+
Sbjct: 90 KALDRLTAPVIRLAGPDVPQSPIAADAAYAPTVERIIK 127
>d2c42a3 c.48.1.3 (A:259-415) Pyruvate-ferredoxin oxidoreductase,
PFOR, domain II {Desulfovibrio africanus [TaxId: 873]}
Length = 157
Score = 46.5 bits (110), Expect = 9e-08
Identities = 15/70 (21%), Positives = 28/70 (40%)
Query: 78 DITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKTNYLISVEGG 137
+ IV + ET + LA +G +I +R RP E ++ + +I+V
Sbjct: 12 ERVIVSMGSSCETIEEVINHLAAKGEKIGLIKVRLYRPFVSEAFFAALPASAKVITVLDR 71
Query: 138 WPQCGIGSEI 147
+ G +
Sbjct: 72 TKEPGAPGDP 81
>d1umdb1 c.36.1.7 (B:2-187) Branched-chain alpha-keto acid
dehydrogenase, Pyr module {Thermus thermophilus [TaxId:
274]}
Length = 186
Score = 46.0 bits (108), Expect = 3e-07
Identities = 21/32 (65%), Positives = 23/32 (71%)
Query: 3 SPYNSEDAKGLLKAAIRDPDPVVFLENELLYG 34
+ DAKGLLKAAIRD DPVVFLE + LY
Sbjct: 146 AVSTPYDAKGLLKAAIRDEDPVVFLEPKRLYR 177
>d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain
{Lactobacillus sp., strain 30a [TaxId: 1591]}
Length = 462
Score = 26.9 bits (58), Expect = 1.3
Identities = 20/79 (25%), Positives = 29/79 (36%), Gaps = 4/79 (5%)
Query: 58 EKQGEAFYHLDAPVIRVTGKDITIVG--HSKAVETALDAAKILAGQGIDAEVINLRSLRP 115
E G+ Y++D +T I + A A L GI E +L S+
Sbjct: 375 EGYGDNQYYVDPNKFMLTTPGINPETGDYEDFGVPATIVANYLRDHGIIPEKSDLNSILF 434
Query: 116 LDIETITKSVMKTNYLISV 134
L T + K N LI+
Sbjct: 435 LMTPAETPA--KMNNLITQ 451
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus
niger), endo-polygalacturonase I [TaxId: 5061]}
Length = 336
Score = 26.2 bits (57), Expect = 2.0
Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 3/38 (7%)
Query: 54 KAKVEKQGE---AFYHLDAPVIRVTGKDITIVGHSKAV 88
+ + +G + P+IR GKD+T+ AV
Sbjct: 42 GSTITFEGTTSFGYKEWKGPLIRFGGKDLTVTMADGAV 79
>d1itwa_ c.77.1.2 (A:) Monomeric isocitrate dehydrogenase
{Azotobacter vinelandii [TaxId: 354]}
Length = 740
Score = 25.5 bits (56), Expect = 4.1
Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Query: 79 ITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKTNYLISV 134
I ++ + + AG+ ID+ V++ +LR I + K L+SV
Sbjct: 197 IELIAKDGSSTVLKAKTSVQAGEIIDSSVMSKNALRNFIAAEI-EDAKKQGVLLSV 251
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus
aculeatus) [TaxId: 5053]}
Length = 339
Score = 25.4 bits (55), Expect = 4.1
Identities = 13/45 (28%), Positives = 17/45 (37%), Gaps = 3/45 (6%)
Query: 47 DFVLPIGKAKVEKQGE---AFYHLDAPVIRVTGKDITIVGHSKAV 88
D V GE + P+I V+G D+TI G S
Sbjct: 39 DLTKLNDGTHVIFSGETTFGYKEWSGPLISVSGSDLTITGASGHS 83
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum
purpureum), endo-polygalacturonase I [TaxId: 58369]}
Length = 333
Score = 25.0 bits (54), Expect = 4.4
Identities = 15/66 (22%), Positives = 20/66 (30%), Gaps = 13/66 (19%)
Query: 64 FYHLDAPVIRVTGKDITIVGHSKAVETALDAAKILAGQG---IDAEVINLRSLRPLDIET 120
LD P+ + G I VG D G G D + N + +P
Sbjct: 51 KTTLDGPLFTIDGTGINFVGAD----HIFD------GNGALYWDGKGTNNGTHKPHPFLK 100
Query: 121 ITKSVM 126
I S
Sbjct: 101 IKGSGT 106
>d1u0ta_ e.52.1.1 (A:) Inorganic polyphosphate/ATP-NAD kinase PpnK
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 302
Score = 25.0 bits (53), Expect = 4.9
Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 3/35 (8%)
Query: 77 KDITIVGH---SKAVETALDAAKILAGQGIDAEVI 108
+ + +V H +A ETA K+L I V+
Sbjct: 1 RSVLLVVHTGRDEATETARRVEKVLGDNKIALRVL 35
>d2akoa1 c.73.1.3 (A:2-251) Glutamate 5-kinase {Campylobacter jejuni
[TaxId: 197]}
Length = 250
Score = 24.6 bits (52), Expect = 5.7
Identities = 7/29 (24%), Positives = 10/29 (34%)
Query: 88 VETALDAAKILAGQGIDAEVINLRSLRPL 116
+ T L AAK L + + L
Sbjct: 206 IVTKLKAAKFLLEHNKKMFLASGFDLSVA 234
>d2r8oa3 c.48.1.1 (A:528-663) Transketolase (TK), C-domain
{Escherichia coli [TaxId: 562]}
Length = 136
Score = 24.0 bits (51), Expect = 7.8
Identities = 13/68 (19%), Positives = 26/68 (38%), Gaps = 4/68 (5%)
Query: 78 DITIVGHSKAVETALDAAKILAGQGIDAEVINLRSLRPLDIETITKSVMKTNYL----IS 133
++ + VE A+ A + L +G+ A V+++ S D + ++
Sbjct: 24 ELIFIATGSEVELAVAAYEKLTAEGVKARVVSMPSTDAFDKQDAAYRESVLPKAVTARVA 83
Query: 134 VEGGWPQC 141
VE G
Sbjct: 84 VEAGIADY 91
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.136 0.385
Gapped
Lambda K H
0.267 0.0485 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 575,077
Number of extensions: 25325
Number of successful extensions: 116
Number of sequences better than 10.0: 1
Number of HSP's gapped: 109
Number of HSP's successfully gapped: 34
Length of query: 158
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 80
Effective length of database: 1,336,656
Effective search space: 106932480
Effective search space used: 106932480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.2 bits)