Query psy7292
Match_columns 62
No_of_seqs 115 out of 1053
Neff 6.6
Searched_HMMs 46136
Date Fri Aug 16 22:59:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7292.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7292hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3275|consensus 99.9 6.6E-25 1.4E-29 133.5 6.7 61 2-62 66-127 (127)
2 COG0537 Hit Diadenosine tetrap 99.8 6.6E-20 1.4E-24 113.2 6.8 57 2-58 48-108 (138)
3 PRK10687 purine nucleoside pho 99.8 3.2E-19 7E-24 107.9 5.9 54 6-59 57-112 (119)
4 PF01230 HIT: HIT domain; Int 99.7 5.8E-18 1.3E-22 97.9 4.8 55 2-56 39-97 (98)
5 cd01276 PKCI_related Protein K 99.6 1.3E-15 2.8E-20 88.4 6.6 53 2-54 50-104 (104)
6 cd00468 HIT_like HIT family: H 99.6 1.5E-15 3.3E-20 84.9 6.1 52 2-53 31-86 (86)
7 cd01275 FHIT FHIT (fragile his 99.6 6.4E-15 1.4E-19 88.6 6.8 55 2-56 47-105 (126)
8 KOG3379|consensus 99.6 4.7E-15 1E-19 92.5 6.1 56 2-57 50-109 (150)
9 cd01277 HINT_subgroup HINT (hi 99.6 1.3E-14 2.9E-19 83.7 6.4 53 2-54 47-103 (103)
10 cd01278 aprataxin_related apra 99.1 8.7E-11 1.9E-15 68.2 4.8 49 3-53 50-104 (104)
11 PRK11720 galactose-1-phosphate 98.8 1.2E-08 2.6E-13 70.9 6.2 54 2-55 243-303 (346)
12 cd00608 GalT Galactose-1-phosp 98.8 1.6E-08 3.5E-13 69.3 6.4 55 2-56 233-296 (329)
13 PLN02643 ADP-glucose phosphory 98.7 6.4E-08 1.4E-12 67.0 6.2 55 2-56 242-304 (336)
14 TIGR00209 galT_1 galactose-1-p 98.7 5.6E-08 1.2E-12 67.6 6.0 54 2-55 243-303 (347)
15 PF11969 DcpS_C: Scavenger mRN 97.9 9.1E-06 2E-10 48.6 2.6 48 3-54 52-104 (116)
16 KOG4359|consensus 94.5 0.1 2.2E-06 33.2 4.5 47 4-52 85-134 (166)
17 PLN03103 GDP-L-galactose-hexos 91.5 0.3 6.5E-06 35.3 3.7 26 27-53 216-241 (403)
18 cd00608 GalT Galactose-1-phosp 90.6 0.78 1.7E-05 31.6 5.0 52 2-53 106-161 (329)
19 PF02744 GalP_UDP_tr_C: Galact 90.5 1.3 2.7E-05 28.1 5.5 49 2-50 62-118 (166)
20 PLN02643 ADP-glucose phosphory 87.2 2.1 4.6E-05 29.8 5.3 52 2-53 120-175 (336)
21 KOG3969|consensus 86.5 2.2 4.8E-05 29.9 5.0 42 8-53 211-255 (310)
22 PF01087 GalP_UDP_transf: Gala 86.4 3.3 7.1E-05 26.3 5.4 51 3-53 124-178 (183)
23 COG1085 GalT Galactose-1-phosp 83.8 4.9 0.00011 28.5 5.8 51 3-53 235-291 (338)
24 COG1085 GalT Galactose-1-phosp 83.3 3.5 7.6E-05 29.3 4.9 52 2-53 107-162 (338)
25 PRK11720 galactose-1-phosphate 81.1 5.1 0.00011 28.1 5.1 52 2-53 118-171 (346)
26 PF04677 CwfJ_C_1: Protein sim 78.2 12 0.00027 22.4 6.2 48 3-54 59-108 (121)
27 COG4360 APA2 ATP adenylyltrans 76.9 1.9 4.1E-05 29.8 1.8 26 28-54 138-163 (298)
28 KOG0562|consensus 76.0 1.8 3.8E-05 28.3 1.4 25 30-54 81-105 (184)
29 TIGR00209 galT_1 galactose-1-p 75.6 8.9 0.00019 26.9 5.0 52 2-53 118-171 (347)
30 PF03432 Relaxase: Relaxase/Mo 72.8 13 0.00027 23.7 4.8 38 12-53 72-109 (242)
31 COG0434 SgcQ Predicted TIM-bar 61.7 13 0.00029 25.6 3.4 36 5-40 64-100 (263)
32 PF13711 DUF4160: Domain of un 58.1 16 0.00034 19.4 2.7 20 29-48 1-20 (66)
33 KOG2720|consensus 55.4 7.4 0.00016 28.2 1.4 24 28-52 214-237 (431)
34 TIGR00259 thylakoid_BtpA membr 55.2 19 0.00041 24.6 3.2 34 5-38 58-92 (257)
35 COG2134 Cdh CDP-diacylglycerol 54.5 43 0.00093 22.8 4.8 25 26-52 119-144 (252)
36 PF03437 BtpA: BtpA family; I 52.8 21 0.00045 24.3 3.1 34 6-39 60-94 (254)
37 COG1932 SerC Phosphoserine ami 52.0 28 0.00061 25.1 3.8 33 11-43 48-82 (365)
38 PRK13863 type IV secretion sys 49.7 36 0.00079 25.1 4.1 36 13-52 97-137 (446)
39 PF01446 Rep_1: Replication pr 48.1 60 0.0013 21.6 4.8 9 44-52 79-87 (233)
40 PF01076 Mob_Pre: Plasmid reco 45.3 12 0.00026 23.9 1.1 14 42-55 129-142 (196)
41 PF04270 Strep_his_triad: Stre 45.0 8.1 0.00018 20.5 0.2 17 42-58 22-39 (53)
42 PF04986 Y2_Tnp: Putative tran 43.2 13 0.00029 23.6 1.0 8 45-52 15-22 (183)
43 COG5075 Uncharacterized conser 42.8 15 0.00033 25.5 1.3 23 27-53 228-250 (305)
44 TIGR03291 methan_mark_17 putat 40.9 38 0.00082 22.2 2.9 26 7-36 130-155 (185)
45 KOG2958|consensus 39.4 81 0.0018 22.6 4.5 49 2-50 121-173 (354)
46 PRK09585 anmK anhydro-N-acetyl 37.7 28 0.00061 24.8 2.1 7 41-47 98-104 (365)
47 TIGR00672 cdh CDP-diacylglycer 35.3 82 0.0018 21.6 3.9 25 26-52 118-143 (250)
48 PRK05471 CDP-diacylglycerol py 33.1 99 0.0021 21.2 4.0 25 26-52 119-144 (252)
49 PF02611 CDH: CDP-diacylglycer 32.4 85 0.0018 21.0 3.6 25 26-52 90-115 (222)
50 PF09886 DUF2113: Uncharacteri 32.2 61 0.0013 21.3 2.8 24 9-36 132-155 (188)
51 COG2342 Predicted extracellula 28.6 1.1E+02 0.0025 21.5 3.8 28 11-39 166-196 (300)
52 PRK13878 conjugal transfer rel 27.6 1.4E+02 0.0031 23.5 4.5 35 14-53 86-121 (746)
53 PF08751 TrwC: TrwC relaxase; 27.3 61 0.0013 22.2 2.3 12 41-52 156-167 (296)
54 PF03702 UPF0075: Uncharacteri 25.6 50 0.0011 23.5 1.7 7 41-47 95-101 (364)
55 PRK06848 hypothetical protein; 25.3 75 0.0016 19.5 2.2 13 12-24 8-20 (139)
56 PF09116 gp45-slide_C: gp45 sl 25.0 1E+02 0.0022 18.6 2.7 31 5-36 5-39 (112)
57 PF04120 Iron_permease: Low af 24.3 1.5E+02 0.0032 18.3 3.4 24 1-24 90-113 (132)
58 PRK12462 phosphoserine aminotr 24.2 1.3E+02 0.0027 21.4 3.5 40 2-42 39-80 (364)
59 PLN02452 phosphoserine transam 23.0 1.7E+02 0.0037 20.5 3.9 39 3-42 43-83 (365)
60 COG4997 Uncharacterized conser 23.0 1.2E+02 0.0027 17.7 2.7 21 4-24 50-70 (95)
61 KOG1611|consensus 21.9 1.2E+02 0.0027 20.8 2.9 10 27-36 82-91 (249)
62 PF15149 CATSPERB: Cation chan 20.1 1.8E+02 0.0039 22.2 3.6 44 6-54 424-469 (540)
No 1
>KOG3275|consensus
Probab=99.92 E-value=6.6e-25 Score=133.50 Aligned_cols=61 Identities=56% Similarity=0.867 Sum_probs=58.3
Q ss_pred CCCcCCHHHHHHHHHHHHHHHHh-hccCceEEEEecCccCCcccceeeeeeeCCCCCCCCCC
Q psy7292 2 KTKSLDIAILGHLMIVAKKVAAK-KLIRNYRVVVNNGWEAVQFSGHLHLHVLGGRPLHWPPG 62 (62)
Q Consensus 2 ~l~~~~~~~~~~l~~~~~~~a~~-~~~~G~~i~~N~G~~aGQ~V~H~H~Hiip~~~l~~~~~ 62 (62)
.+++.++++++++|.++|++|++ ++.+|||+++|||+.++|+|+|+|+|+|||++++||||
T Consensus 66 ~aed~~~e~Lg~ll~~~k~vak~~Gl~~gYrvv~NnG~~g~QsV~HvH~HvlgGrqm~WPpg 127 (127)
T KOG3275|consen 66 KAEDRDDELLGHLLPVAKKVAKALGLEDGYRVVQNNGKDGHQSVYHVHLHVLGGRQMQWPPG 127 (127)
T ss_pred hcccCCHHHHHHHHHHHHHHHHHhCcccceeEEEcCCcccceEEEEEEEEEeCCcccCCCCC
Confidence 35788999999999999999999 99999999999999999999999999999999999997
No 2
>COG0537 Hit Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases [Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only]
Probab=99.81 E-value=6.6e-20 Score=113.17 Aligned_cols=57 Identities=30% Similarity=0.394 Sum_probs=52.1
Q ss_pred CCCcCCHHHHHHHHHHHHHHHHh---hc-cCceEEEEecCccCCcccceeeeeeeCCCCCC
Q psy7292 2 KTKSLDIAILGHLMIVAKKVAAK---KL-IRNYRVVVNNGWEAVQFSGHLHLHVLGGRPLH 58 (62)
Q Consensus 2 ~l~~~~~~~~~~l~~~~~~~a~~---~~-~~G~~i~~N~G~~aGQ~V~H~H~Hiip~~~l~ 58 (62)
++.+++++++.+++..+++++++ .+ ++|||+.+|+|+.|||+|+|+|+|||||++.+
T Consensus 48 ~l~~l~~~~~~~l~~~~~~ia~al~~~~~~~g~ni~~N~g~~agq~V~HlH~HvIPr~~~d 108 (138)
T COG0537 48 DLEDLDPEELAELFLLAQKIAKALKEAFGADGYNIGINNGKAAGQEVFHLHIHIIPRYKGD 108 (138)
T ss_pred hhhhCCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEecCcccCcCcceEEEEEcCCcCCC
Confidence 57789999999999999999998 35 69999999999999999999999999998743
No 3
>PRK10687 purine nucleoside phosphoramidase; Provisional
Probab=99.78 E-value=3.2e-19 Score=107.90 Aligned_cols=54 Identities=35% Similarity=0.559 Sum_probs=45.5
Q ss_pred CCHHHHHHHHHHHHHHHHh-hc-cCceEEEEecCccCCcccceeeeeeeCCCCCCC
Q psy7292 6 LDIAILGHLMIVAKKVAAK-KL-IRNYRVVVNNGWEAVQFSGHLHLHVLGGRPLHW 59 (62)
Q Consensus 6 ~~~~~~~~l~~~~~~~a~~-~~-~~G~~i~~N~G~~aGQ~V~H~H~Hiip~~~l~~ 59 (62)
.+.+++.+++..++++++. ++ ++|||+++|+|+++||+|+|+|+|||||++++.
T Consensus 57 ~~~~~l~~l~~~~~~~~~~~~~~~~g~~l~~n~G~~agQ~V~HlHiHvI~g~~~~~ 112 (119)
T PRK10687 57 EHEQALGRMITVAAKIAEQEGIAEDGYRLIMNTNRHGGQEVYHIHMHLLGGRPLGP 112 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeCCCcCCcccCEEEEEECCCcccCc
Confidence 3334677788888888776 66 689999999999999999999999999998753
No 4
>PF01230 HIT: HIT domain; InterPro: IPR001310 The Histidine Triad (HIT) motif, His-x-His-x-His-x-x (x, a hydrophobic amino acid) was identified as being highly conserved in a variety of organisms []. Crystal structure of rabbit Hint, purified as an adenosine and AMP-binding protein, showed that proteins in the HIT superfamily are conserved as nucleotide-binding proteins and that Hint homologues, which are found in all forms of life, are structurally related to Fhit homologues and GalT-related enzymes, which have more restricted phylogenetic profiles []. Hint homologues including rabbit Hint and yeast Hnt1 hydrolyse adenosine 5' monophosphoramide substrates such as AMP-NH2 and AMP-lysine to AMP plus the amine product and function as positive regulators of Cdk7/Kin28 in vivo []. Fhit homologues are diadenosine polyphosphate hydrolases [] and function as tumour suppressors in human and mouse [] though the tumour suppressing function of Fhit does not depend on ApppA hydrolysis []. The third branch of the HIT superfamily, which includes GalT homologues, contains a related His-X-His-X-Gln motif and transfers nucleoside monophosphate moieties to phosphorylated second substrates rather than hydrolysing them [].; PDB: 3LB5_B 1EMS_A 1Y23_A 3ANO_B 1KPE_B 1KPC_A 4EQE_B 1KPA_A 1KPB_B 4EQG_B ....
Probab=99.73 E-value=5.8e-18 Score=97.90 Aligned_cols=55 Identities=33% Similarity=0.375 Sum_probs=49.3
Q ss_pred CCCcCCHHHHHHHHHHHHHHHHh---hc-cCceEEEEecCccCCcccceeeeeeeCCCC
Q psy7292 2 KTKSLDIAILGHLMIVAKKVAAK---KL-IRNYRVVVNNGWEAVQFSGHLHLHVLGGRP 56 (62)
Q Consensus 2 ~l~~~~~~~~~~l~~~~~~~a~~---~~-~~G~~i~~N~G~~aGQ~V~H~H~Hiip~~~ 56 (62)
++.++++++..+++..++++++. .+ ++|||+.+|||+.+||+|+|+|+|||||++
T Consensus 39 ~l~dl~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~~~g~~~gq~v~HlH~HviPR~~ 97 (98)
T PF01230_consen 39 SLSDLPPEERAELMQLVQKVAKALKEAFGPDGYNVIINNGPAAGQSVPHLHFHVIPRYK 97 (98)
T ss_dssp SGGGSHHHHHHHHHHHHHHHHHHHHHHHTTSEEEEEEEESGGGTSSSSS-EEEEEEEST
T ss_pred chhcCCHHHHHHHHHHHHHHHHHHhcccccceeeccccchhhhcCccCEEEEEEecccC
Confidence 46788899999999999999998 35 689999999999999999999999999975
No 5
>cd01276 PKCI_related Protein Kinase C Interacting protein related (PKCI): PKCI and related proteins belong to the ubiquitous HIT family of hydrolases that act on alpha-phosphates of ribonucleotides. The members of this subgroup have a conserved HxHxHxx motif (x is a hydrophobic residue) that is a signature for this family. No enzymatic activity has been reported however, for PKCI and its related members.
Probab=99.63 E-value=1.3e-15 Score=88.42 Aligned_cols=53 Identities=43% Similarity=0.621 Sum_probs=47.6
Q ss_pred CCCcCCHHHHHHHHHHHHHHHHh-hc-cCceEEEEecCccCCcccceeeeeeeCC
Q psy7292 2 KTKSLDIAILGHLMIVAKKVAAK-KL-IRNYRVVVNNGWEAVQFSGHLHLHVLGG 54 (62)
Q Consensus 2 ~l~~~~~~~~~~l~~~~~~~a~~-~~-~~G~~i~~N~G~~aGQ~V~H~H~Hiip~ 54 (62)
++++.+.+++.+++..++++++. .. ++|||+++|+|+.+||+|+|+|+|||+|
T Consensus 50 dl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~n~~~~~g~~~g~~v~H~HiHii~~ 104 (104)
T cd01276 50 DATEEDEELLGHLLSAAAKVAKDLGIAEDGYRLVINCGKDGGQEVFHLHLHLLGG 104 (104)
T ss_pred HcccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCCCCCceeEEEEEEeCC
Confidence 45667888999999999999887 55 6899999999999999999999999986
No 6
>cd00468 HIT_like HIT family: HIT (Histidine triad) proteins, named for a motif related to the sequence HxHxH/Qxx (x, a hydrophobic amino acid), are a superfamily of nucleotide hydrolases and transferases, which act on the alpha-phosphate of ribonucleotides. On the basis of sequence, substrate specificity, structure, evolution and mechanism, HIT proteins are classified in the literacture into three major branches: the Hint branch, which consists of adenosine 5' -monophosphoramide hydrolases, the Fhit branch, that consists of diadenosine polyphosphate hydrolases, and the GalT branch consisting of specific nucloside monophosphate transferases. Further sequence analysis reveals several new closely related, yet uncharacterized subgroups.
Probab=99.62 E-value=1.5e-15 Score=84.90 Aligned_cols=52 Identities=42% Similarity=0.523 Sum_probs=47.0
Q ss_pred CCCcCCHHHHHHHHHHHHHHHHh---hc-cCceEEEEecCccCCcccceeeeeeeC
Q psy7292 2 KTKSLDIAILGHLMIVAKKVAAK---KL-IRNYRVVVNNGWEAVQFSGHLHLHVLG 53 (62)
Q Consensus 2 ~l~~~~~~~~~~l~~~~~~~a~~---~~-~~G~~i~~N~G~~aGQ~V~H~H~Hiip 53 (62)
++.+++++++.+++.++++++++ .+ ++|||+.+|+|+.+||+|+|+|+||||
T Consensus 31 ~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~n~g~~~g~~v~H~H~hiiP 86 (86)
T cd00468 31 TLPDLDEALLADLVITAQRVAAELEKHGNVPSLTVFVNDGAAAGQSVPHVHLHVLP 86 (86)
T ss_pred ChhHCCHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEcCCccCCCcCCEEEEEeCC
Confidence 45678899999999999999987 34 589999999999999999999999998
No 7
>cd01275 FHIT FHIT (fragile histidine family): FHIT proteins, related to the HIT family carry a motif HxHxH/Qxx (x, is a hydrophobic amino acid), On the basis of sequence, substrate specificity, structure, evolution and mechanism, HIT proteins are classified into three branches: the Hint branch, which consists of adenosine 5' -monophosphoramide hydrolases, the Fhit branch, that consists of diadenosine polyphosphate hydrolases, and the GalT branch consisting of specific nucloside monophosphate transferases. Fhit plays a very important role in the development of tumours. Infact, Fhit deletions are among the earliest and most frequent genetic alterations in the development of tumours.
Probab=99.58 E-value=6.4e-15 Score=88.57 Aligned_cols=55 Identities=13% Similarity=0.239 Sum_probs=48.6
Q ss_pred CCCcCCHHHHHHHHHHHHHHHHh---hc-cCceEEEEecCccCCcccceeeeeeeCCCC
Q psy7292 2 KTKSLDIAILGHLMIVAKKVAAK---KL-IRNYRVVVNNGWEAVQFSGHLHLHVLGGRP 56 (62)
Q Consensus 2 ~l~~~~~~~~~~l~~~~~~~a~~---~~-~~G~~i~~N~G~~aGQ~V~H~H~Hiip~~~ 56 (62)
++.++++++..+++..++++++. .+ ++|||+.+|+|+.+||+|+|+|+|||||..
T Consensus 47 ~~~~L~~~e~~~l~~~~~~v~~~l~~~~~~~~~n~~~~~g~~~gq~v~H~HiHiiPR~~ 105 (126)
T cd01275 47 RLEDLTPEEIADLFKLVQLAMKALKVVYKPDGFNIGINDGKAGGGIVPHVHIHIVPRWN 105 (126)
T ss_pred ChhhCCHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeCCcccCCCcCEEEEEEeCCcC
Confidence 45678899999999999998887 34 589999999999999999999999999854
No 8
>KOG3379|consensus
Probab=99.58 E-value=4.7e-15 Score=92.51 Aligned_cols=56 Identities=25% Similarity=0.324 Sum_probs=49.6
Q ss_pred CCCcCCHHHHHHHHHHHHHHHHh--h-c-cCceEEEEecCccCCcccceeeeeeeCCCCC
Q psy7292 2 KTKSLDIAILGHLMIVAKKVAAK--K-L-IRNYRVVVNNGWEAVQFSGHLHLHVLGGRPL 57 (62)
Q Consensus 2 ~l~~~~~~~~~~l~~~~~~~a~~--~-~-~~G~~i~~N~G~~aGQ~V~H~H~Hiip~~~l 57 (62)
.+.++++++.++||.+++++-+. . + ...++|.+.+|+.|||+|||+|+||+||+.-
T Consensus 50 Rl~dLt~~E~aDlF~t~~~v~~~lek~~~~ts~ti~iQDG~~AGQTVpHvHvHIlPR~~g 109 (150)
T KOG3379|consen 50 RLTDLTAAETADLFTTVQKVQRVLEKHYNATSLTIAIQDGPEAGQTVPHVHVHILPRKAG 109 (150)
T ss_pred ccccCCcHHHHHHHHHHHHHHHHHHHHhcccceEEEeccccccCcccceeEEEEcccccc
Confidence 47889999999999999999886 3 3 4679999999999999999999999998654
No 9
>cd01277 HINT_subgroup HINT (histidine triad nucleotide-binding protein) subgroup: Members of this CD belong to the superfamily of histidine triad hydrolases that act on alpha-phosphate of ribonucleotides. This subgroup includes members from all three forms of cellular life. Although the biochemical function has not been characterised for many of the members of this subgroup, the proteins from Yeast have been shown to be involved in secretion, peroxisome formation and gene expression.
Probab=99.56 E-value=1.3e-14 Score=83.65 Aligned_cols=53 Identities=36% Similarity=0.437 Sum_probs=48.0
Q ss_pred CCCcCCHHHHHHHHHHHHHHHHh---hc-cCceEEEEecCccCCcccceeeeeeeCC
Q psy7292 2 KTKSLDIAILGHLMIVAKKVAAK---KL-IRNYRVVVNNGWEAVQFSGHLHLHVLGG 54 (62)
Q Consensus 2 ~l~~~~~~~~~~l~~~~~~~a~~---~~-~~G~~i~~N~G~~aGQ~V~H~H~Hiip~ 54 (62)
++.++++++..+++..++++++. .+ ++|||+++|+|+.+||+++|+|+||+||
T Consensus 47 ~~~~l~~~e~~~l~~~~~~v~~~l~~~~~~~~~n~~~~~~~~~g~~~~H~HiHiiPR 103 (103)
T cd01277 47 NLLDLDPEELAELILAAKKVARALKKALKADGLNILQNNGRAAGQVVFHVHVHVIPR 103 (103)
T ss_pred ChhhCCHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeCCcccCcccCEEEEEEccC
Confidence 46778899999999999999987 34 6899999999999999999999999997
No 10
>cd01278 aprataxin_related aprataxin related: Aprataxin, a HINT family hydrolase is mutated in ataxia oculomotor apraxia syndrome. All the members of this subgroup have the conserved HxHxHxx (where x is a hydrophobic residue) signature motif. Members of this subgroup are predominantly eukaryotic in origin.
Probab=99.14 E-value=8.7e-11 Score=68.23 Aligned_cols=49 Identities=24% Similarity=0.325 Sum_probs=33.8
Q ss_pred CCcCCHH---HHHHHHHHHHHHHHh--hc-cCceEEEEecCccCCcccceeeeeeeC
Q psy7292 3 TKSLDIA---ILGHLMIVAKKVAAK--KL-IRNYRVVVNNGWEAVQFSGHLHLHVLG 53 (62)
Q Consensus 3 l~~~~~~---~~~~l~~~~~~~a~~--~~-~~G~~i~~N~G~~aGQ~V~H~H~Hiip 53 (62)
+.+++++ ++++++..+.+..+. .+ ++|||+++|+|+. |+|+|+|+|||.
T Consensus 50 ~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~n~g~h~~p~--~~v~H~H~Hvi~ 104 (104)
T cd01278 50 LKALTKEDVPLLEHMETVGREKLLRSDNTDPSEFRFGFHAPPF--TSVSHLHLHVIA 104 (104)
T ss_pred hHHCCHhHHHHHHHHHHHHHHHHHHHcCCCccCeEEEeCCCCC--cCeeeEEEEeeC
Confidence 3444454 455555555553322 35 6799999999987 999999999983
No 11
>PRK11720 galactose-1-phosphate uridylyltransferase; Provisional
Probab=98.82 E-value=1.2e-08 Score=70.92 Aligned_cols=54 Identities=17% Similarity=0.076 Sum_probs=46.1
Q ss_pred CCCcCCHHHHHHHHHHHHHHHHh---hc-cC-ceEEEEecCccCC--cccceeeeeeeCCC
Q psy7292 2 KTKSLDIAILGHLMIVAKKVAAK---KL-IR-NYRVVVNNGWEAV--QFSGHLHLHVLGGR 55 (62)
Q Consensus 2 ~l~~~~~~~~~~l~~~~~~~a~~---~~-~~-G~~i~~N~G~~aG--Q~V~H~H~Hiip~~ 55 (62)
++.+++++++.+|+.+++++++. .+ .+ .||+++|+++.+| |+++|+|+||+|+.
T Consensus 243 ~~~dl~dee~~~La~~lk~v~~~l~~~~~~~~pyn~~~h~~p~~~~~~~~~H~HihiiPrl 303 (346)
T PRK11720 243 RLTDLTDAQRDDLALALKKLTSRYDNLFQCSFPYSMGWHGAPFNGEENDHWQLHAHFYPPL 303 (346)
T ss_pred ChhhCCHHHHHHHHHHHHHHHHHHHHHhCCCCCCceeEEecccCCCCCeeEEEEEEEeCCc
Confidence 46788999999999999999997 35 44 7999999998654 68999999999983
No 12
>cd00608 GalT Galactose-1-phosphate uridyl transferase (GalT): This enzyme plays a key role in galactose metabolism by catalysing the transfer of a uridine 5'-phosphoryl group from UDP-galactose 1-phosphate. The structure of E.coli GalT reveals that the enzyme contains two identical subunits. It also demonstrates that the active site is formed by amino acid residues from both subunits of the dimer.
Probab=98.80 E-value=1.6e-08 Score=69.35 Aligned_cols=55 Identities=15% Similarity=0.109 Sum_probs=45.7
Q ss_pred CCCcCCHHHHHHHHHHHHHHHHh---hcc--CceEEEEecCccC----CcccceeeeeeeCCCC
Q psy7292 2 KTKSLDIAILGHLMIVAKKVAAK---KLI--RNYRVVVNNGWEA----VQFSGHLHLHVLGGRP 56 (62)
Q Consensus 2 ~l~~~~~~~~~~l~~~~~~~a~~---~~~--~G~~i~~N~G~~a----GQ~V~H~H~Hiip~~~ 56 (62)
++.++++++..+|..++++++++ .+. .+||+++|.++.+ ||+++|+|+||+|++.
T Consensus 233 ~~~dl~~~e~~~La~~l~~v~~~l~~~~~~~~pyn~~~h~~P~~~~~~~~~~~H~Hihi~Pr~~ 296 (329)
T cd00608 233 RFTDLTDEEREDLAEILKRLLARYDNLFNCSFPYSMGWHQAPTGGKELENWYYHWHFEIPPRRS 296 (329)
T ss_pred ChhHCCHHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeccCCCCCcCCcceEEEEEEeCCCcC
Confidence 45678889999999999999976 343 4899999988876 4799999999999843
No 13
>PLN02643 ADP-glucose phosphorylase
Probab=98.68 E-value=6.4e-08 Score=66.99 Aligned_cols=55 Identities=15% Similarity=0.039 Sum_probs=44.3
Q ss_pred CCCcCCHHHHHHHHHHHHHHHHh---hc-cCceEEEEecCcc--CCccc--ceeeeeeeCCCC
Q psy7292 2 KTKSLDIAILGHLMIVAKKVAAK---KL-IRNYRVVVNNGWE--AVQFS--GHLHLHVLGGRP 56 (62)
Q Consensus 2 ~l~~~~~~~~~~l~~~~~~~a~~---~~-~~G~~i~~N~G~~--aGQ~V--~H~H~Hiip~~~ 56 (62)
++.+++++++.+|..++++++++ .+ .++||+++|+|+. ++|++ +|+|+||+||..
T Consensus 242 ~~~dl~~~e~~~La~ilk~v~~~l~~~~~~~pyN~~~~~~P~~~~~~~~~~~H~hihi~PRl~ 304 (336)
T PLN02643 242 NFHEIDDDKAVDLGGLLKLMLQKISKQLNDPPYNYMIQTSPLGVEESNLPYTHWFLQIVPQLS 304 (336)
T ss_pred ChhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeecCCCccccCcccceEEEEEEecCcC
Confidence 46788999999999999999987 34 3599999999997 56755 666679999753
No 14
>TIGR00209 galT_1 galactose-1-phosphate uridylyltransferase, family 1. This enzyme is involved in glucose and galactose interconversion. This model describes one of two extremely distantly related branches of the model pfam01087 from PFAM.
Probab=98.67 E-value=5.6e-08 Score=67.60 Aligned_cols=54 Identities=19% Similarity=0.124 Sum_probs=46.1
Q ss_pred CCCcCCHHHHHHHHHHHHHHHHh---hc-cC-ceEEEEecCccCCc--ccceeeeeeeCCC
Q psy7292 2 KTKSLDIAILGHLMIVAKKVAAK---KL-IR-NYRVVVNNGWEAVQ--FSGHLHLHVLGGR 55 (62)
Q Consensus 2 ~l~~~~~~~~~~l~~~~~~~a~~---~~-~~-G~~i~~N~G~~aGQ--~V~H~H~Hiip~~ 55 (62)
++.+++++++.+|+.++++++++ .+ .+ +||+++|+++.+|| ..+|+|+||+|+.
T Consensus 243 ~~~dl~d~e~~~La~~lk~v~~~l~~~~~~~~pYn~~~h~~p~~~~~~~~~H~HihiiPrl 303 (347)
T TIGR00209 243 RITDLTDAQRSDLALILKKLTSKYDNLFETSFPYSMGWHGAPFNGEENQHWQLHAHFYPPL 303 (347)
T ss_pred ChhhCCHHHHHHHHHHHHHHHHHHHHHhCCCCCcceeEEecccCCCCCcEEEEEEEEeCCc
Confidence 46788999999999999999987 35 44 89999999998886 5678999999984
No 15
>PF11969 DcpS_C: Scavenger mRNA decapping enzyme C-term binding; PDB: 1VLR_B 1XMM_D 1XML_B 1ST0_A 3BLA_B 3BL9_B 3BL7_B 1ST4_B 1XQU_B.
Probab=97.91 E-value=9.1e-06 Score=48.64 Aligned_cols=48 Identities=23% Similarity=0.285 Sum_probs=33.5
Q ss_pred CCcCCHHHHHHHHHHHHHHHHh-h---c-cCceEEEEecCccCCcccceeeeeeeCC
Q psy7292 3 TKSLDIAILGHLMIVAKKVAAK-K---L-IRNYRVVVNNGWEAVQFSGHLHLHVLGG 54 (62)
Q Consensus 3 l~~~~~~~~~~l~~~~~~~a~~-~---~-~~G~~i~~N~G~~aGQ~V~H~H~Hiip~ 54 (62)
|+..+-+.+..|...++++++. . . .+.+++++. +.++++|+|+|+|..
T Consensus 52 L~~~~~~lL~~m~~~~~~~~~~~~~~~~~~~~~~~gfH----~~PS~~HLHlHvi~~ 104 (116)
T PF11969_consen 52 LTPEHLPLLERMREVARELLKEEYPGDLDSDDIRLGFH----YPPSVYHLHLHVISP 104 (116)
T ss_dssp --GGGHHHHHHHHHHHHHHHHHHH-TT-EGGGEEEEEE----SS-SSSS-EEEEEET
T ss_pred cCHHHHHHHHHHHHHHHHHHHHhcccccchhhhccccc----CCCCcceEEEEEccC
Confidence 4556778899999999999987 3 2 345666554 456999999999974
No 16
>KOG4359|consensus
Probab=94.53 E-value=0.1 Score=33.22 Aligned_cols=47 Identities=21% Similarity=0.334 Sum_probs=35.5
Q ss_pred CcCCHHHHHHHHHHHHHHHHh-hc--cCceEEEEecCccCCcccceeeeeee
Q psy7292 4 KSLDIAILGHLMIVAKKVAAK-KL--IRNYRVVVNNGWEAVQFSGHLHLHVL 52 (62)
Q Consensus 4 ~~~~~~~~~~l~~~~~~~a~~-~~--~~G~~i~~N~G~~aGQ~V~H~H~Hii 52 (62)
...+-+++.+++.+.+.+..+ .. ++-.++++--.+- -+|-|+|+|+|
T Consensus 85 ~k~~V~Lve~m~~~G~~~l~r~~~td~~~~r~GFHLPPf--~SV~HLHlH~I 134 (166)
T KOG4359|consen 85 RKDQVELVENMVTVGKTILERNNFTDFTNVRMGFHLPPF--CSVSHLHLHVI 134 (166)
T ss_pred chhhHHHHHHHHHHHHHHHHHhccCCchheeEeccCCCc--ceeeeeeEeee
Confidence 344556777789999888887 22 4667777777664 78999999999
No 17
>PLN03103 GDP-L-galactose-hexose-1-phosphate guanyltransferase; Provisional
Probab=91.50 E-value=0.3 Score=35.27 Aligned_cols=26 Identities=27% Similarity=0.270 Sum_probs=20.9
Q ss_pred cCceEEEEecCccCCcccceeeeeeeC
Q psy7292 27 IRNYRVVVNNGWEAVQFSGHLHLHVLG 53 (62)
Q Consensus 27 ~~G~~i~~N~G~~aGQ~V~H~H~Hiip 53 (62)
..+|+|+.|- ..|.-+|.|+|||..-
T Consensus 216 ~p~frvgYNS-lGA~ASvNHLHFQa~y 241 (403)
T PLN03103 216 NPYFRVGYNS-LGAFATINHLHFQAYY 241 (403)
T ss_pred CCcEEEEecC-CccccCcceeeeeecc
Confidence 3689999987 5556699999999764
No 18
>cd00608 GalT Galactose-1-phosphate uridyl transferase (GalT): This enzyme plays a key role in galactose metabolism by catalysing the transfer of a uridine 5'-phosphoryl group from UDP-galactose 1-phosphate. The structure of E.coli GalT reveals that the enzyme contains two identical subunits. It also demonstrates that the active site is formed by amino acid residues from both subunits of the dimer.
Probab=90.63 E-value=0.78 Score=31.62 Aligned_cols=52 Identities=12% Similarity=0.068 Sum_probs=38.5
Q ss_pred CCCcCCHHHHHHHHHHHHHHHHh-h-cc--CceEEEEecCccCCcccceeeeeeeC
Q psy7292 2 KTKSLDIAILGHLMIVAKKVAAK-K-LI--RNYRVVVNNGWEAVQFSGHLHLHVLG 53 (62)
Q Consensus 2 ~l~~~~~~~~~~l~~~~~~~a~~-~-~~--~G~~i~~N~G~~aGQ~V~H~H~Hiip 53 (62)
.+.+++.+.+..++.+-++..+. . .+ .=..|.-|-|+.+|-|..|-|.-|+.
T Consensus 106 ~l~~~~~~~i~~v~~~~~~r~~~l~~~~~~~yv~if~N~G~~aGaSl~HpH~Qi~a 161 (329)
T cd00608 106 TLAEMSVAEIREVVEAWAERTRELGKNPRIKYVQIFENKGAEMGASLPHPHGQIWA 161 (329)
T ss_pred ChhhCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeecCcccccCCCCCCeeeee
Confidence 35677778788877776666554 2 11 23566889999999999999999874
No 19
>PF02744 GalP_UDP_tr_C: Galactose-1-phosphate uridyl transferase, C-terminal domain; InterPro: IPR005850 Galactose-1-phosphate uridyl transferase catalyses the conversion of UDP-glucose and alpha-D-galactose 1-phosphate to alpha-D-glucose 1-phosphate and UDP-galactose during galactose metabolism. The enzyme is present in prokaryotes and eukaryotes. Defects in GalT in humans is the cause of galactosemia, an inherited disorder of galactose metabolism that leads to jaundice, cataracts and mental retardation. This domain describes the C-terminal of Galactose-1-phosphate uridyl transferase. SCOP reports fold duplication of the C-terminal with the N-terminal domain. Both are involved in Zn and Fe binding; GO: 0008108 UDP-glucose:hexose-1-phosphate uridylyltransferase activity, 0006012 galactose metabolic process; PDB: 1GUP_C 1HXP_A 1HXQ_A 1GUQ_C.
Probab=90.48 E-value=1.3 Score=28.06 Aligned_cols=49 Identities=12% Similarity=0.040 Sum_probs=29.0
Q ss_pred CCCcCCHHHHHHHHHHHHHHHHh---hc--cCceEEEEecCccCCccc---ceeeee
Q psy7292 2 KTKSLDIAILGHLMIVAKKVAAK---KL--IRNYRVVVNNGWEAVQFS---GHLHLH 50 (62)
Q Consensus 2 ~l~~~~~~~~~~l~~~~~~~a~~---~~--~~G~~i~~N~G~~aGQ~V---~H~H~H 50 (62)
++.+.++++..+|..+.+.+++. .+ +--|++++...+..+..- +|+|+-
T Consensus 62 ~l~~l~~~E~~dlA~~l~~i~~r~d~lf~~~~pY~m~ihqaP~~~~~~~~~fH~H~e 118 (166)
T PF02744_consen 62 SLADLTDEERDDLAAILKPILRRYDNLFETSFPYNMGIHQAPVNGEDPEHWFHPHFE 118 (166)
T ss_dssp SGGG--HHHHHHHHHHHHHHHHHHHHHCTS---EEEEEE---SSSS--TT--EEEEE
T ss_pred hHHHhhhHHHhhHHHHHHHHHHHhcccCCCCCCCchhhhcCCCCcccchhhhhcccc
Confidence 35677888888888899999887 34 347999998888766654 555554
No 20
>PLN02643 ADP-glucose phosphorylase
Probab=87.19 E-value=2.1 Score=29.83 Aligned_cols=52 Identities=19% Similarity=0.197 Sum_probs=38.2
Q ss_pred CCCcCCHHHHHHHHHHHHHHHHh-hccC---ceEEEEecCccCCcccceeeeeeeC
Q psy7292 2 KTKSLDIAILGHLMIVAKKVAAK-KLIR---NYRVVVNNGWEAVQFSGHLHLHVLG 53 (62)
Q Consensus 2 ~l~~~~~~~~~~l~~~~~~~a~~-~~~~---G~~i~~N~G~~aGQ~V~H~H~Hiip 53 (62)
.+.+++.+.+..++.+-++..+. .-.. =+.|.-|-|+.+|-+.+|-|.-|+.
T Consensus 120 ~l~~~~~~~i~~v~~~~~~r~~~l~~~~~i~yv~iF~N~G~~aGaSl~HPH~Qi~a 175 (336)
T PLN02643 120 QLSDLPARHIGEVLKAYKKRINQLQSDSRFKYVQVFKNHGASAGASMSHSHSQIIA 175 (336)
T ss_pred ChHHCCHHHHHHHHHHHHHHHHHHhcCCCceEEEEEeecCccCCcCCCCCceeeEe
Confidence 35677778888887776665554 2222 3556789999999999999998874
No 21
>KOG3969|consensus
Probab=86.52 E-value=2.2 Score=29.86 Aligned_cols=42 Identities=14% Similarity=0.286 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHh--hc-cCceEEEEecCccCCcccceeeeeeeC
Q psy7292 8 IAILGHLMIVAKKVAAK--KL-IRNYRVVVNNGWEAVQFSGHLHLHVLG 53 (62)
Q Consensus 8 ~~~~~~l~~~~~~~a~~--~~-~~G~~i~~N~G~~aGQ~V~H~H~Hiip 53 (62)
-+.+..+-..++.+... ++ ++-.++.+-= -.+-+|+|+||++
T Consensus 211 ~~lL~n~r~k~~~~i~~~y~v~~dqlrmf~HY----qPSyYHlHVHi~n 255 (310)
T KOG3969|consen 211 LQLLRNIRNKSREAIPQRYGVDPDQLRMFFHY----QPSYYHLHVHIVN 255 (310)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCchhEEEEEEe----cCceEEEEEEEEe
Confidence 34444554455544444 45 6778887744 2457899999997
No 22
>PF01087 GalP_UDP_transf: Galactose-1-phosphate uridyl transferase, N-terminal domain; InterPro: IPR005849 Galactose-1-phosphate uridyl transferase catalyses the conversion of UDP-glucose and alpha-D-galactose 1-phosphate to alpha-D-glucose 1-phosphate and UDP-galactose during galactose metabolism. The enzyme is present in prokaryotes and eukaryotes. Defects in GalT in humans is the cause of galactosemia, an inherited disorder of galactose metabolism that leads to jaundice, cataracts and mental retardation. This domain describes the C-terminal of Galactose-1-phosphate uridyl transferase. SCOP reports fold duplication of the C-terminal with the N-terminal domain. Both are involved in Zn and Fe binding; GO: 0008108 UDP-glucose:hexose-1-phosphate uridylyltransferase activity, 0006012 galactose metabolic process; PDB: 1GUP_C 1HXP_A 1HXQ_A 1GUQ_C 1Z84_B 1ZWJ_A 2Q4L_A 2H39_B 2Q4H_A.
Probab=86.36 E-value=3.3 Score=26.30 Aligned_cols=51 Identities=14% Similarity=0.223 Sum_probs=33.5
Q ss_pred CCcCCHHHHHHHHHHHHHHHHh--h--ccCceEEEEecCccCCcccceeeeeeeC
Q psy7292 3 TKSLDIAILGHLMIVAKKVAAK--K--LIRNYRVVVNNGWEAVQFSGHLHLHVLG 53 (62)
Q Consensus 3 l~~~~~~~~~~l~~~~~~~a~~--~--~~~G~~i~~N~G~~aGQ~V~H~H~Hiip 53 (62)
+.+++.+....++.+.+.-... . ...=..+.=|.|..+|.+..|-|--|+.
T Consensus 124 ~~~~~~~~~~~i~~a~~~r~~~l~~~~~~~yv~~FeN~G~~~GaSl~HpHsQi~a 178 (183)
T PF01087_consen 124 LADMSVKEIKEILKAWRDRYRELSSDKYIKYVLIFENEGYEAGASLPHPHSQIIA 178 (183)
T ss_dssp GGGS-HHHHHHHHHHHHHHHHHHCT-TT-SEEEEEEEESGGGT-SSSSSEEEEEE
T ss_pred hhhCCHHHHHHHHHHHHHHHHHHhccCCcceEEEEEecCCcCCCCCCCCceEEec
Confidence 4566777777777664444333 1 2344667789999999999999988763
No 23
>COG1085 GalT Galactose-1-phosphate uridylyltransferase [Energy production and conversion]
Probab=83.76 E-value=4.9 Score=28.53 Aligned_cols=51 Identities=22% Similarity=0.178 Sum_probs=35.7
Q ss_pred CCcCCHHHHHHHHHHHHHHHHh--h-ccCc--eEEEEecCcc-CCcccceeeeeeeC
Q psy7292 3 TKSLDIAILGHLMIVAKKVAAK--K-LIRN--YRVVVNNGWE-AVQFSGHLHLHVLG 53 (62)
Q Consensus 3 l~~~~~~~~~~l~~~~~~~a~~--~-~~~G--~~i~~N~G~~-aGQ~V~H~H~Hiip 53 (62)
+.+.++++..+|-.+.+++... . +..+ |++.+-.=+. ..+.-+|+|+||.|
T Consensus 235 l~~~sdee~~~lA~ilk~~~~~y~~~~~~~fpY~m~~h~ap~~~~~~~~~~h~~~~p 291 (338)
T COG1085 235 LTDLSDEELKDLAEILKKLLARYDNLFGNSFPYSMGFHQAPFNEVNEHYHLHAEIYP 291 (338)
T ss_pred hhhCCHHHHHHHHHHHHHHHHHHhhccCCCCceeeeeecCCCCcccccceEEEEEcc
Confidence 5677888899998888888887 3 3444 6665433222 23566899999999
No 24
>COG1085 GalT Galactose-1-phosphate uridylyltransferase [Energy production and conversion]
Probab=83.33 E-value=3.5 Score=29.26 Aligned_cols=52 Identities=12% Similarity=0.122 Sum_probs=41.6
Q ss_pred CCCcCCHHHHHHHHHHHHHHHHh--hc--cCceEEEEecCccCCcccceeeeeeeC
Q psy7292 2 KTKSLDIAILGHLMIVAKKVAAK--KL--IRNYRVVVNNGWEAVQFSGHLHLHVLG 53 (62)
Q Consensus 2 ~l~~~~~~~~~~l~~~~~~~a~~--~~--~~G~~i~~N~G~~aGQ~V~H~H~Hiip 53 (62)
.+.+.+.+.+.+++.+.+...+. .- ..=+.|..|.|+.+|-+.+|-|.-|.-
T Consensus 107 ~l~~~~~~~~~~vv~~~~e~~~~L~~~~~~~yV~iF~N~Gk~~G~S~~HPH~Qi~a 162 (338)
T COG1085 107 TLPELPVEEIEEVVKLWQERVRELYEREKYKYVQIFENKGKAAGASLPHPHGQIVA 162 (338)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHhhccCcceEEeeeccCcccCccCCCCCcceee
Confidence 46677888899999988888776 11 234788999999999999999988764
No 25
>PRK11720 galactose-1-phosphate uridylyltransferase; Provisional
Probab=81.07 E-value=5.1 Score=28.11 Aligned_cols=52 Identities=19% Similarity=0.119 Sum_probs=38.2
Q ss_pred CCCcCCHHHHHHHHHHHHHHHHh--hccCceEEEEecCccCCcccceeeeeeeC
Q psy7292 2 KTKSLDIAILGHLMIVAKKVAAK--KLIRNYRVVVNNGWEAVQFSGHLHLHVLG 53 (62)
Q Consensus 2 ~l~~~~~~~~~~l~~~~~~~a~~--~~~~G~~i~~N~G~~aGQ~V~H~H~Hiip 53 (62)
.+.+++.+.+..++.+-+.-.+. ..-.=+.|.-|-|+.+|-+..|-|--|+.
T Consensus 118 ~l~~~~~~~i~~v~~~~~~r~~~l~~~i~yv~iF~N~G~~~GaSl~HPH~Qi~a 171 (346)
T PRK11720 118 TLPELSVAALREVVDTWQEQTAELGKTYPWVQVFENKGAAMGCSNPHPHGQIWA 171 (346)
T ss_pred ChhHCCHHHHHHHHHHHHHHHHHHHhCCcEEEEEeecCcccCcCCCCCceeeee
Confidence 35677888888887776666554 11123566789999999999999998874
No 26
>PF04677 CwfJ_C_1: Protein similar to CwfJ C-terminus 1; InterPro: IPR006768 This group of sequences contain a conserved C-terminal domain which is found in the Schizosaccharomyces pombe (Fission yeast) protein Cwf19 (Q09909 from SWISSPROT) and its homologues. Cwf19 is part of the Cdc5p complex involved in mRNA splicing []. This domain is found in association with IPR006767 from INTERPRO, which is generally C-terminal and adjacent to this domain.
Probab=78.17 E-value=12 Score=22.44 Aligned_cols=48 Identities=10% Similarity=0.053 Sum_probs=27.9
Q ss_pred CCcCCHHHHHHHHHHHHHHHHh--hccCceEEEEecCccCCcccceeeeeeeCC
Q psy7292 3 TKSLDIAILGHLMIVAKKVAAK--KLIRNYRVVVNNGWEAVQFSGHLHLHVLGG 54 (62)
Q Consensus 3 l~~~~~~~~~~l~~~~~~~a~~--~~~~G~~i~~N~G~~aGQ~V~H~H~Hiip~ 54 (62)
+...|++.+.+|-+.-+.+.+- ....+.-+.=++ ...-.|+|+.+||=
T Consensus 59 ~~~~de~~~~Ei~~f~~~L~~mf~~~~~~vvf~E~~----~~~~~H~~iq~vPv 108 (121)
T PF04677_consen 59 LTELDEEVWEEIRNFQKSLRKMFASQGKDVVFFERV----RKRNPHTHIQCVPV 108 (121)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEe----CCCCcEEEEEEEEc
Confidence 4566777777777655555443 222233222222 34568999999984
No 27
>COG4360 APA2 ATP adenylyltransferase (5',5'''-P-1,P-4-tetraphosphate phosphorylase II) [Nucleotide transport and metabolism]
Probab=76.88 E-value=1.9 Score=29.84 Aligned_cols=26 Identities=27% Similarity=0.197 Sum_probs=23.0
Q ss_pred CceEEEEecCccCCcccceeeeeeeCC
Q psy7292 28 RNYRVVVNNGWEAVQFSGHLHLHVLGG 54 (62)
Q Consensus 28 ~G~~i~~N~G~~aGQ~V~H~H~Hiip~ 54 (62)
+| -+..|.|+.||-+-+|-|+-|+|-
T Consensus 138 dg-lvFYNsGp~aGaSq~HkHLQi~pm 163 (298)
T COG4360 138 DG-LVFYNSGPIAGASQDHKHLQIVPM 163 (298)
T ss_pred cc-eEEecCCCCcCcCCCccceeEeec
Confidence 56 467899999999999999999983
No 28
>KOG0562|consensus
Probab=76.00 E-value=1.8 Score=28.29 Aligned_cols=25 Identities=32% Similarity=0.425 Sum_probs=20.3
Q ss_pred eEEEEecCccCCcccceeeeeeeCC
Q psy7292 30 YRVVVNNGWEAVQFSGHLHLHVLGG 54 (62)
Q Consensus 30 ~~i~~N~G~~aGQ~V~H~H~Hiip~ 54 (62)
....++.|-.|+.+.-++|+|||..
T Consensus 81 ~~~~f~vG~HavPSM~~LHLHVISk 105 (184)
T KOG0562|consen 81 LCNYFRVGFHAVPSMNNLHLHVISK 105 (184)
T ss_pred hhhheeeeeccCcchhheeEEEeec
Confidence 4455677778899999999999974
No 29
>TIGR00209 galT_1 galactose-1-phosphate uridylyltransferase, family 1. This enzyme is involved in glucose and galactose interconversion. This model describes one of two extremely distantly related branches of the model pfam01087 from PFAM.
Probab=75.58 E-value=8.9 Score=26.94 Aligned_cols=52 Identities=15% Similarity=0.101 Sum_probs=37.2
Q ss_pred CCCcCCHHHHHHHHHHHHHHHHh-hc-cCceEEEEecCccCCcccceeeeeeeC
Q psy7292 2 KTKSLDIAILGHLMIVAKKVAAK-KL-IRNYRVVVNNGWEAVQFSGHLHLHVLG 53 (62)
Q Consensus 2 ~l~~~~~~~~~~l~~~~~~~a~~-~~-~~G~~i~~N~G~~aGQ~V~H~H~Hiip 53 (62)
.+.+++.+.+..++.+-+.-.+. .- -.=+.|.-|-|+.+|-+.+|-|--|+.
T Consensus 118 ~l~~m~~~~i~~v~~~~~~r~~~l~~~i~yv~iF~N~G~~~GaSl~HPH~Qi~a 171 (347)
T TIGR00209 118 TLPELSVAALTEIVKTWQEQTAELGKTYPWVQIFENKGAAMGCSNPHPHGQIWA 171 (347)
T ss_pred ChhHCCHHHHHHHHHHHHHHHHHHHhCCcEEEEEeecCcccCcCCCCCceeeee
Confidence 35667777777777776665554 20 022556779999999999999988774
No 30
>PF03432 Relaxase: Relaxase/Mobilisation nuclease domain ; InterPro: IPR005094 Relaxases/mobilisation proteins are required for the horizontal transfer of genetic information contained on plasmids that occurs during bacterial conjugation. The relaxase, in conjunction with several auxiliary proteins, forms the relaxation complex or relaxosome. Relaxases nick duplex DNA in a specific manner by catalysing trans-esterification [].
Probab=72.76 E-value=13 Score=23.73 Aligned_cols=38 Identities=21% Similarity=0.183 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHhhccCceEEEEecCccCCcccceeeeeeeC
Q psy7292 12 GHLMIVAKKVAAKKLIRNYRVVVNNGWEAVQFSGHLHLHVLG 53 (62)
Q Consensus 12 ~~l~~~~~~~a~~~~~~G~~i~~N~G~~aGQ~V~H~H~Hiip 53 (62)
..+..+++..++.-.++++.+++-.-.. -.|.|+||+=
T Consensus 72 e~~~~~~~~~~~~~~~~~~~~v~~~H~D----~~h~H~Hivi 109 (242)
T PF03432_consen 72 EQAHEIAREFAEEMGPGNHQYVVVVHTD----TDHPHVHIVI 109 (242)
T ss_pred HHHHHHHHHHHHHcCCCCcceEEEECCC----cCeeeeeEEE
Confidence 4444556666654124456665544333 4588888873
No 31
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=61.70 E-value=13 Score=25.58 Aligned_cols=36 Identities=11% Similarity=0.229 Sum_probs=30.3
Q ss_pred cCCHHHHHHHHHHHHHHHHh-hccCceEEEEecCccC
Q psy7292 5 SLDIAILGHLMIVAKKVAAK-KLIRNYRVVVNNGWEA 40 (62)
Q Consensus 5 ~~~~~~~~~l~~~~~~~a~~-~~~~G~~i~~N~G~~a 40 (62)
+.+++....|-..++++-+. .+|-|.|++-|....|
T Consensus 64 ~v~~~tvaaMa~iv~~v~r~v~iPvGvNVLrNd~vaA 100 (263)
T COG0434 64 DVGPETVAAMAVIVREVVREVSIPVGVNVLRNDAVAA 100 (263)
T ss_pred CCChHHHHHHHHHHHHHHHhccccceeeeeccccHHH
Confidence 56788889999999999888 7799999999987643
No 32
>PF13711 DUF4160: Domain of unknown function (DUF4160)
Probab=58.14 E-value=16 Score=19.43 Aligned_cols=20 Identities=15% Similarity=0.136 Sum_probs=10.7
Q ss_pred ceEEEEecCccCCcccceee
Q psy7292 29 NYRVVVNNGWEAVQFSGHLH 48 (62)
Q Consensus 29 G~~i~~N~G~~aGQ~V~H~H 48 (62)
||++.+...+..-..-+|+|
T Consensus 1 G~~i~~ys~e~~dH~PpHvH 20 (66)
T PF13711_consen 1 GIRIYFYSNEGNDHEPPHVH 20 (66)
T ss_pred CEEEEEEECCCCCCCCCeEE
Confidence 67776666443223455554
No 33
>KOG2720|consensus
Probab=55.41 E-value=7.4 Score=28.25 Aligned_cols=24 Identities=29% Similarity=0.382 Sum_probs=18.4
Q ss_pred CceEEEEecCccCCcccceeeeeee
Q psy7292 28 RNYRVVVNNGWEAVQFSGHLHLHVL 52 (62)
Q Consensus 28 ~G~~i~~N~G~~aGQ~V~H~H~Hii 52 (62)
+=|+++.|.- .|-.+|.|+|+|..
T Consensus 214 ~~frlgyNSl-ga~AsVNHLHfha~ 237 (431)
T KOG2720|consen 214 PYFRLGYNSL-GAFASVNHLHFHAY 237 (431)
T ss_pred chhheecccc-hhhhhhhhhhhhhh
Confidence 4688888763 35679999999975
No 34
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=55.18 E-value=19 Score=24.55 Aligned_cols=34 Identities=12% Similarity=0.240 Sum_probs=27.9
Q ss_pred cCCHHHHHHHHHHHHHHHHh-hccCceEEEEecCc
Q psy7292 5 SLDIAILGHLMIVAKKVAAK-KLIRNYRVVVNNGW 38 (62)
Q Consensus 5 ~~~~~~~~~l~~~~~~~a~~-~~~~G~~i~~N~G~ 38 (62)
+.+++....|-.+++++.+. .+|=|.|++.|++.
T Consensus 58 ~~~p~tva~m~~i~~~v~~~~~~p~GvnvL~nd~~ 92 (257)
T TIGR00259 58 EVDPETVAAMAVIAGQLKSDVSIPLGINVLRNDAV 92 (257)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCeeeeeecCCCH
Confidence 46778888888888888776 66889999999987
No 35
>COG2134 Cdh CDP-diacylglycerol pyrophosphatase [Lipid metabolism]
Probab=54.49 E-value=43 Score=22.84 Aligned_cols=25 Identities=16% Similarity=0.310 Sum_probs=14.6
Q ss_pred ccC-ceEEEEecCccCCcccceeeeeee
Q psy7292 26 LIR-NYRVVVNNGWEAVQFSGHLHLHVL 52 (62)
Q Consensus 26 ~~~-G~~i~~N~G~~aGQ~V~H~H~Hii 52 (62)
+|+ .+.+.+|--. |-+=.|+||||-
T Consensus 119 ipd~dvsLaINs~~--gRtQdqlHIHIS 144 (252)
T COG2134 119 IPDSDVSLAINSKN--GRTQDQLHIHIS 144 (252)
T ss_pred CCccceEEEecCcc--CccccceEEEEE
Confidence 454 6777777644 444556666653
No 36
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=52.82 E-value=21 Score=24.29 Aligned_cols=34 Identities=12% Similarity=0.136 Sum_probs=28.6
Q ss_pred CCHHHHHHHHHHHHHHHHh-hccCceEEEEecCcc
Q psy7292 6 LDIAILGHLMIVAKKVAAK-KLIRNYRVVVNNGWE 39 (62)
Q Consensus 6 ~~~~~~~~l~~~~~~~a~~-~~~~G~~i~~N~G~~ 39 (62)
.+++....|-.+++++.+. .+|=|.|+..|++.+
T Consensus 60 ~~~etvaaM~~i~~~v~~~~~~p~GVnvL~nd~~a 94 (254)
T PF03437_consen 60 VGPETVAAMARIAREVRREVSVPVGVNVLRNDPKA 94 (254)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEeeeecCCCHH
Confidence 5778888998888888777 678899999999874
No 37
>COG1932 SerC Phosphoserine aminotransferase [Coenzyme metabolism / Amino acid transport and metabolism]
Probab=51.98 E-value=28 Score=25.10 Aligned_cols=33 Identities=21% Similarity=0.319 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHh--hccCceEEEEecCccCCcc
Q psy7292 11 LGHLMIVAKKVAAK--KLIRNYRVVVNNGWEAVQF 43 (62)
Q Consensus 11 ~~~l~~~~~~~a~~--~~~~G~~i~~N~G~~aGQ~ 43 (62)
...+...+++-.+. .+|++|+|++=.|.+.||-
T Consensus 48 ~~~v~~~a~~~lreLl~iPd~Y~VlflqGGat~qf 82 (365)
T COG1932 48 FKNVLEEAEKDLRELLNIPDDYKVLFLQGGATGQF 82 (365)
T ss_pred HHHHHHHHHHHHHHHhCCCCCceEEEEcCccHHHH
Confidence 44555555555555 6699999999998887773
No 38
>PRK13863 type IV secretion system T-DNA border endonuclease VirD2; Provisional
Probab=49.66 E-value=36 Score=25.14 Aligned_cols=36 Identities=22% Similarity=0.226 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHhhccCc-----eEEEEecCccCCcccceeeeeee
Q psy7292 13 HLMIVAKKVAAKKLIRN-----YRVVVNNGWEAVQFSGHLHLHVL 52 (62)
Q Consensus 13 ~l~~~~~~~a~~~~~~G-----~~i~~N~G~~aGQ~V~H~H~Hii 52 (62)
.+..+++..|+..|++| |++++-.- -.-.|-|+||+
T Consensus 97 AVrdAARefA~E~FgsG~~G~~~dYV~AlH----~D~dHPHVHLv 137 (446)
T PRK13863 97 AAYAASREWAAEMFGSGAGGGRYNYLTAFH----IDRDHPHLHVV 137 (446)
T ss_pred HHHHHHHHHHHHHhCCCCCCCceeEEEEEe----cCCCCCeEEEE
Confidence 45556777777666544 44444322 22357777775
No 39
>PF01446 Rep_1: Replication protein; InterPro: IPR000989 Replication proteins (rep) are involved in plasmid replication. The Rep protein binds to the plasmid DNA and nicks it at the double strand origin (dso) of replication. The 3'-hydroxyl end created is extended by the host DNA replicase, and the 5' end is displaced during synthesis. At the end of one replication round, Rep introduces a second single stranded break at the dso and ligates the ssDNA extremities generating one double-stranded plasmid and one circular ssDNA form. Complementary strand synthesis of the circular ssDNA is usually initiated at the single-stranded origin by the host RNA polymerase [].; GO: 0003677 DNA binding, 0006260 DNA replication, 0005727 extrachromosomal circular DNA
Probab=48.14 E-value=60 Score=21.61 Aligned_cols=9 Identities=67% Similarity=0.862 Sum_probs=7.4
Q ss_pred cceeeeeee
Q psy7292 44 SGHLHLHVL 52 (62)
Q Consensus 44 V~H~H~Hii 52 (62)
-.|.|+||+
T Consensus 79 ~~HPH~Hvl 87 (233)
T PF01446_consen 79 SWHPHFHVL 87 (233)
T ss_pred eeccceEEE
Confidence 579999987
No 40
>PF01076 Mob_Pre: Plasmid recombination enzyme; InterPro: IPR001668 With some plasmids, recombination can occur in a site specific manner that is independent of RecA. In such cases, the recombination event requires another protein called Pre. Pre is a plasmid recombination enzyme. This protein is also known as Mob (conjugative mobilisation) [].; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005727 extrachromosomal circular DNA
Probab=45.32 E-value=12 Score=23.92 Aligned_cols=14 Identities=21% Similarity=0.368 Sum_probs=11.6
Q ss_pred cccceeeeeeeCCC
Q psy7292 42 QFSGHLHLHVLGGR 55 (62)
Q Consensus 42 Q~V~H~H~Hiip~~ 55 (62)
-+.||+|+-++|..
T Consensus 129 E~tPH~H~~~vP~~ 142 (196)
T PF01076_consen 129 ETTPHMHFDVVPID 142 (196)
T ss_pred CCCcceEEEEeecc
Confidence 45899999999953
No 41
>PF04270 Strep_his_triad: Streptococcal histidine triad protein ; InterPro: IPR006270 This entry represents a repeated sequence region that includes a His-X-X-His-X-His (histidine triad) motif, which is found in family of Streptococcal proteins. Members of the family are suggested to cleave human complement component 3, and family member PhpA has been shown in vaccine studies to be a protective antigen in mice []. ; PDB: 2CS7_C.
Probab=45.01 E-value=8.1 Score=20.46 Aligned_cols=17 Identities=24% Similarity=0.270 Sum_probs=11.2
Q ss_pred cccce-eeeeeeCCCCCC
Q psy7292 42 QFSGH-LHLHVLGGRPLH 58 (62)
Q Consensus 42 Q~V~H-~H~Hiip~~~l~ 58 (62)
=.|+| =|+|.||..+|.
T Consensus 22 y~vpHgdH~HyI~k~dLs 39 (53)
T PF04270_consen 22 YVVPHGDHFHYIPKSDLS 39 (53)
T ss_dssp EEEEETTEEEEEEGGGS-
T ss_pred EEeeCCCcccCCchhhCC
Confidence 33555 388999987764
No 42
>PF04986 Y2_Tnp: Putative transposase; InterPro: IPR007069 Transposases are needed for efficient transposition of the insertion sequence or transposon DNA. This family includes transposases IS1294 and IS801 []. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated
Probab=43.17 E-value=13 Score=23.56 Aligned_cols=8 Identities=50% Similarity=0.771 Sum_probs=6.3
Q ss_pred ceeeeeee
Q psy7292 45 GHLHLHVL 52 (62)
Q Consensus 45 ~H~H~Hii 52 (62)
.|.|+|+|
T Consensus 15 ~hpHiH~l 22 (183)
T PF04986_consen 15 WHPHIHCL 22 (183)
T ss_pred cCCeEEEE
Confidence 68888876
No 43
>COG5075 Uncharacterized conserved protein [Function unknown]
Probab=42.79 E-value=15 Score=25.51 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=15.7
Q ss_pred cCceEEEEecCccCCcccceeeeeeeC
Q psy7292 27 IRNYRVVVNNGWEAVQFSGHLHLHVLG 53 (62)
Q Consensus 27 ~~G~~i~~N~G~~aGQ~V~H~H~Hiip 53 (62)
++-.++.+-- -.+-+|+|+||+-
T Consensus 228 ~n~l~mfvHY----~PsYyhlHvHI~n 250 (305)
T COG5075 228 PNELRMFVHY----QPSYYHLHVHIVN 250 (305)
T ss_pred hhHeEEEEEe----ccceEEEEEEEEe
Confidence 4556666543 2457999999984
No 44
>TIGR03291 methan_mark_17 putative methanogenesis marker protein 17. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=40.93 E-value=38 Score=22.23 Aligned_cols=26 Identities=15% Similarity=0.139 Sum_probs=15.7
Q ss_pred CHHHHHHHHHHHHHHHHhhccCceEEEEec
Q psy7292 7 DIAILGHLMIVAKKVAAKKLIRNYRVVVNN 36 (62)
Q Consensus 7 ~~~~~~~l~~~~~~~a~~~~~~G~~i~~N~ 36 (62)
..+....++.+..++ +|.|||+--++
T Consensus 130 ~~~l~~~v~d~~~rI----~PEGFRVr~~~ 155 (185)
T TIGR03291 130 RKDLKKKVYDFMFRV----FPEGFRVKRNA 155 (185)
T ss_pred hHHHHHHHHHHHHHh----CCCccEEeehh
Confidence 334444455544444 58999997755
No 45
>KOG2958|consensus
Probab=39.43 E-value=81 Score=22.57 Aligned_cols=49 Identities=14% Similarity=0.081 Sum_probs=37.4
Q ss_pred CCCcCCHHHHHHHHHHHHHHHHh-hcc---CceEEEEecCccCCcccceeeee
Q psy7292 2 KTKSLDIAILGHLMIVAKKVAAK-KLI---RNYRVVVNNGWEAVQFSGHLHLH 50 (62)
Q Consensus 2 ~l~~~~~~~~~~l~~~~~~~a~~-~~~---~G~~i~~N~G~~aGQ~V~H~H~H 50 (62)
.|..++...+..+..+=+++... +-. +=..|.-|-|.+.|=+-+|-|--
T Consensus 121 tLp~m~~~~i~~vv~aw~~~~~~l~~h~~y~yvQIFeNkGa~mGcSn~HpHgQ 173 (354)
T KOG2958|consen 121 TLPLMDVVEIRDVVDAWKKLYNELGQHDSYKYVQIFENKGAAMGCSNPHPHGQ 173 (354)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHhcccCCcceeeeeccCCcccccCCCCcccc
Confidence 36677888888888887777765 322 34667789999999999998854
No 46
>PRK09585 anmK anhydro-N-acetylmuramic acid kinase; Reviewed
Probab=37.71 E-value=28 Score=24.82 Aligned_cols=7 Identities=29% Similarity=-0.045 Sum_probs=5.9
Q ss_pred Cccccee
Q psy7292 41 VQFSGHL 47 (62)
Q Consensus 41 GQ~V~H~ 47 (62)
||+|.|.
T Consensus 98 GQTv~H~ 104 (365)
T PRK09585 98 GQTVRHR 104 (365)
T ss_pred CcccccC
Confidence 8999874
No 47
>TIGR00672 cdh CDP-diacylglycerol pyrophosphatase, bacterial type. Alternate names for this enzyme include CDP-diglyceride hydrolase and CDP-diacylglycerol hydrolase.
Probab=35.28 E-value=82 Score=21.58 Aligned_cols=25 Identities=20% Similarity=0.452 Sum_probs=16.4
Q ss_pred cc-CceEEEEecCccCCcccceeeeeee
Q psy7292 26 LI-RNYRVVVNNGWEAVQFSGHLHLHVL 52 (62)
Q Consensus 26 ~~-~G~~i~~N~G~~aGQ~V~H~H~Hii 52 (62)
+| +-+.+.+|. ..|-+=.|+||||=
T Consensus 118 ipd~~lsLaINS--~~gRSQnQLHIHIs 143 (250)
T TIGR00672 118 IPDRAVSLAINS--RTGRSQNHFHIHIS 143 (250)
T ss_pred CChhheeEEecC--CCCcccccceeeHh
Confidence 45 356666665 45666678888864
No 48
>PRK05471 CDP-diacylglycerol pyrophosphatase; Provisional
Probab=33.06 E-value=99 Score=21.24 Aligned_cols=25 Identities=16% Similarity=0.316 Sum_probs=16.5
Q ss_pred cc-CceEEEEecCccCCcccceeeeeee
Q psy7292 26 LI-RNYRVVVNNGWEAVQFSGHLHLHVL 52 (62)
Q Consensus 26 ~~-~G~~i~~N~G~~aGQ~V~H~H~Hii 52 (62)
+| +-+.+.+|. ..|-+=.++||||-
T Consensus 119 ipd~~lsLaINS--~~gRSQnQLHIHIs 144 (252)
T PRK05471 119 IPDSAVSLAINS--RYGRTQDQLHIHIS 144 (252)
T ss_pred CChhheEEEecC--CCCccccceeeehh
Confidence 45 456666665 45666678888864
No 49
>PF02611 CDH: CDP-diacylglycerol pyrophosphatase; InterPro: IPR003763 The CDP-diacylglycerol pyrophosphatases 3.6.1.26 from EC play a role in the regulation of phospholipid metabolism by inositol, as well as regulating the cellular levels of phosphatidylinositol [].; GO: 0008715 CDP-diacylglycerol diphosphatase activity, 0008654 phospholipid biosynthetic process, 0016020 membrane; PDB: 2POF_A.
Probab=32.43 E-value=85 Score=21.03 Aligned_cols=25 Identities=20% Similarity=0.352 Sum_probs=11.1
Q ss_pred cc-CceEEEEecCccCCcccceeeeeee
Q psy7292 26 LI-RNYRVVVNNGWEAVQFSGHLHLHVL 52 (62)
Q Consensus 26 ~~-~G~~i~~N~G~~aGQ~V~H~H~Hii 52 (62)
+| +-+-+.+|.- .|-+=.++||||=
T Consensus 90 lpd~~lsLaINS~--~gRsQdQLHIHis 115 (222)
T PF02611_consen 90 LPDDDLSLAINSQ--YGRSQDQLHIHIS 115 (222)
T ss_dssp --GGGEEEEEB-G--GG-S--S--EEEE
T ss_pred CCccceEEEecCc--cCccccceEeEhh
Confidence 44 4677777764 3555567777764
No 50
>PF09886 DUF2113: Uncharacterized protein conserved in archaea (DUF2113); InterPro: IPR016762 There is currently no experimental data for members of this group or their homologues. Based on distant sequence similarity, they may be tentatively predicted to be nucleic acid-binding proteins, they are also likely to be linked to methanogenesis or a process closely connected to it.
Probab=32.21 E-value=61 Score=21.28 Aligned_cols=24 Identities=8% Similarity=0.080 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHhhccCceEEEEec
Q psy7292 9 AILGHLMIVAKKVAAKKLIRNYRVVVNN 36 (62)
Q Consensus 9 ~~~~~l~~~~~~~a~~~~~~G~~i~~N~ 36 (62)
+....++.++.++ +|.|||+--+.
T Consensus 132 ~l~~~v~da~~RI----~PEGFRVr~~~ 155 (188)
T PF09886_consen 132 DLKKKVYDAMFRI----APEGFRVRRHY 155 (188)
T ss_pred HHHHHHHHHHHHh----CCCccEEeecc
Confidence 3444444444444 58999987654
No 51
>COG2342 Predicted extracellular endo alpha-1,4 polygalactosaminidase or related polysaccharide hydrolase [Carbohydrate transport and metabolism]
Probab=28.63 E-value=1.1e+02 Score=21.53 Aligned_cols=28 Identities=21% Similarity=0.239 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHh---hccCceEEEEecCcc
Q psy7292 11 LGHLMIVAKKVAAK---KLIRNYRVVVNNGWE 39 (62)
Q Consensus 11 ~~~l~~~~~~~a~~---~~~~G~~i~~N~G~~ 39 (62)
..++..+..+|+.. +.+. |+|+.|||+.
T Consensus 166 ~k~m~~~i~~i~~~~ra~~~~-~~Vi~qng~~ 196 (300)
T COG2342 166 AKKMVKFIAAIAEYARAANPL-FRVIPQNGAE 196 (300)
T ss_pred HHHHHHHHHHHHHHHHhcCCc-EEEEecccHh
Confidence 34555566666654 3367 9999999976
No 52
>PRK13878 conjugal transfer relaxase TraI; Provisional
Probab=27.56 E-value=1.4e+02 Score=23.53 Aligned_cols=35 Identities=17% Similarity=0.184 Sum_probs=19.4
Q ss_pred HHHHHHHHHHh-hccCceEEEEecCccCCcccceeeeeeeC
Q psy7292 14 LMIVAKKVAAK-KLIRNYRVVVNNGWEAVQFSGHLHLHVLG 53 (62)
Q Consensus 14 l~~~~~~~a~~-~~~~G~~i~~N~G~~aGQ~V~H~H~Hiip 53 (62)
+...++..++. ++.+ +..++-. -..-.|+|+||+=
T Consensus 86 ~~~I~~~~~~~LG~~~-hQ~Vva~----H~DTdh~HiHIvi 121 (746)
T PRK13878 86 LRAIEERICAGLGYGE-HQRVSAV----HHDTDNLHIHIAI 121 (746)
T ss_pred HHHHHHHHHHHhCCCC-ceEEEEE----ECCCCCceeEEEE
Confidence 34455666655 5543 3333322 2335799999984
No 53
>PF08751 TrwC: TrwC relaxase; InterPro: IPR014862 Relaxases are DNA strand transferases which function during the conjugative cell to cell DNA transfer. TrwC binds to the origin of transfer (oriT) and melts the double helix. ; PDB: 1ZM5_A 1S6M_A 1OSB_C 2CDM_C 1OMH_A 1QX0_A 3L57_A 3L6T_A 2A0I_A 2Q7U_A ....
Probab=27.30 E-value=61 Score=22.17 Aligned_cols=12 Identities=33% Similarity=0.351 Sum_probs=9.3
Q ss_pred Ccccceeeeeee
Q psy7292 41 VQFSGHLHLHVL 52 (62)
Q Consensus 41 GQ~V~H~H~Hii 52 (62)
-..-||+|.|++
T Consensus 156 R~~DP~LHtH~v 167 (296)
T PF08751_consen 156 RAGDPQLHTHVV 167 (296)
T ss_dssp TTSSEEEEEEEE
T ss_pred CccccCccceee
Confidence 344699999987
No 54
>PF03702 UPF0075: Uncharacterised protein family (UPF0075); InterPro: IPR005338 Anhydro-N-acetylmuramic acid kinase catalyzes the specific phosphorylation of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. It is also required for the utilisation of anhMurNAc, either imported from the medium, or derived from its own cell wall murein, and in so doing plays a role in cell wall recycling [, ]. ; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006040 amino sugar metabolic process, 0009254 peptidoglycan turnover; PDB: 3QBX_B 3QBW_A 3CQY_B.
Probab=25.60 E-value=50 Score=23.52 Aligned_cols=7 Identities=29% Similarity=-0.244 Sum_probs=5.2
Q ss_pred Cccccee
Q psy7292 41 VQFSGHL 47 (62)
Q Consensus 41 GQ~V~H~ 47 (62)
||+|+|.
T Consensus 95 GQTv~H~ 101 (364)
T PF03702_consen 95 GQTVFHR 101 (364)
T ss_dssp -EEEEEE
T ss_pred CcceecC
Confidence 8999885
No 55
>PRK06848 hypothetical protein; Validated
Probab=25.32 E-value=75 Score=19.52 Aligned_cols=13 Identities=38% Similarity=0.347 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHh
Q psy7292 12 GHLMIVAKKVAAK 24 (62)
Q Consensus 12 ~~l~~~~~~~a~~ 24 (62)
.+|+..|+++.+.
T Consensus 8 ~~L~~~A~~a~~~ 20 (139)
T PRK06848 8 YELIKAAEKVIEK 20 (139)
T ss_pred HHHHHHHHHHHHh
Confidence 4578888888775
No 56
>PF09116 gp45-slide_C: gp45 sliding clamp, C terminal; InterPro: IPR015200 This domain is essential for the interaction of the gp45 sliding clamp with the corresponding polymerase. It adopts a DNA clamp fold, consisting of two alpha helices and two beta sheets - the fold is duplicated and has internal pseudo two-fold symmetry []. ; PDB: 1B8H_A 1B77_B 3U61_F 3U60_G 3U5Z_R 1CZD_B.
Probab=24.96 E-value=1e+02 Score=18.61 Aligned_cols=31 Identities=19% Similarity=0.290 Sum_probs=18.1
Q ss_pred cCCHHHHHHHHHHHHHHHHh--hc-c-CceEEEEec
Q psy7292 5 SLDIAILGHLMIVAKKVAAK--KL-I-RNYRVVVNN 36 (62)
Q Consensus 5 ~~~~~~~~~l~~~~~~~a~~--~~-~-~G~~i~~N~ 36 (62)
++..+.+..|+++++-+.-. ++ + +| +|+++.
T Consensus 5 ~L~~edl~ql~kas~~l~l~dl~~~~~~g-kivv~~ 39 (112)
T PF09116_consen 5 ELKAEDLQQLMKASRTLGLPDLCFVNDDG-KIVVTD 39 (112)
T ss_dssp EE-HHHHHHHHHHHHHCT--EEEEEEETT-EEEEEE
T ss_pred EecHHHHHHHHHHHHhcCCCeEEEEecCC-EEEEEc
Confidence 35667788888777766543 44 3 45 666665
No 57
>PF04120 Iron_permease: Low affinity iron permease ; InterPro: IPR007251 Although originally identified as a low-affinity iron(II) permease [, ], Fet4 has since been shown to import several other transition metal ions, including copper [, ] and zinc []. Copper, cobalt, and cadmium inhibit Fet4 [, ]. Fet4 is an integral protein of the plasma membrane [, ]. FET4 is not essential, not even in fet3 fet4 double mutants []. Over expression of FET4 improves growth under alkaline conditions []. Transcription of FET4 is induced by Aft1 in response to low levels of iron [, , ] or by Zap1 in response to low zinc [, ], but not in response to low copper []. When the high-affinity iron permease component Fet3 is deleted, FET4 is induced by the addition of copper, zinc, cobalt, or manganese []. It is also induced under anaerobic conditions [, , ] and repressed by Rox1 in aerobic conditions [, ]. Rox1 attenuates the activation of FET4 by Aft1 or Zap1 []. ; GO: 0055085 transmembrane transport
Probab=24.33 E-value=1.5e+02 Score=18.34 Aligned_cols=24 Identities=13% Similarity=0.151 Sum_probs=20.0
Q ss_pred CCCCcCCHHHHHHHHHHHHHHHHh
Q psy7292 1 MKTKSLDIAILGHLMIVAKKVAAK 24 (62)
Q Consensus 1 ~~l~~~~~~~~~~l~~~~~~~a~~ 24 (62)
+++++++++++.++-..-.+.++.
T Consensus 90 i~iE~l~~~el~~~~~~~~~~~~~ 113 (132)
T PF04120_consen 90 IDIEDLTEEELEEIRKRYERLAEQ 113 (132)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHH
Confidence 578899999999988888887765
No 58
>PRK12462 phosphoserine aminotransferase; Provisional
Probab=24.23 E-value=1.3e+02 Score=21.43 Aligned_cols=40 Identities=18% Similarity=0.153 Sum_probs=26.2
Q ss_pred CCCcCCHHHHHHHHHHHHHHHHh--hccCceEEEEecCccCCc
Q psy7292 2 KTKSLDIAILGHLMIVAKKVAAK--KLIRNYRVVVNNGWEAVQ 42 (62)
Q Consensus 2 ~l~~~~~~~~~~l~~~~~~~a~~--~~~~G~~i~~N~G~~aGQ 42 (62)
|+..-++ +..+++..+++-.+. ..|+.|.+++=.|...+|
T Consensus 39 eisHRs~-~F~~i~~~~~~~Lr~Ll~~P~~y~Vlfl~GggT~~ 80 (364)
T PRK12462 39 GMSHRSS-WFSSLLAQAEADLRDLLGIPDEYGVVFLQGGSSLQ 80 (364)
T ss_pred ccccccH-HHHHHHHHHHHHHHHHhCCCCCCeEEEEeccHHHH
Confidence 3444444 367777777777666 457889998877765554
No 59
>PLN02452 phosphoserine transaminase
Probab=23.04 E-value=1.7e+02 Score=20.54 Aligned_cols=39 Identities=15% Similarity=0.136 Sum_probs=25.3
Q ss_pred CCcCCHHHHHHHHHHHHHHHHh--hccCceEEEEecCccCCc
Q psy7292 3 TKSLDIAILGHLMIVAKKVAAK--KLIRNYRVVVNNGWEAVQ 42 (62)
Q Consensus 3 l~~~~~~~~~~l~~~~~~~a~~--~~~~G~~i~~N~G~~aGQ 42 (62)
+..-+++ ..+++..+++-.+. ..|+.|.+++=.|...+|
T Consensus 43 ~sHRs~~-f~~i~~~~~~~L~~l~~~p~~y~v~~l~Gsgt~~ 83 (365)
T PLN02452 43 MSHRGKE-FLSIIQKAEADLRELLDIPDNYEVLFLQGGASTQ 83 (365)
T ss_pred cCCCchH-HHHHHHHHHHHHHHHhCCCCCceEEEEeCccHHH
Confidence 3334443 56777777776666 457789988877766544
No 60
>COG4997 Uncharacterized conserved protein [Function unknown]
Probab=22.97 E-value=1.2e+02 Score=17.73 Aligned_cols=21 Identities=19% Similarity=0.341 Sum_probs=17.4
Q ss_pred CcCCHHHHHHHHHHHHHHHHh
Q psy7292 4 KSLDIAILGHLMIVAKKVAAK 24 (62)
Q Consensus 4 ~~~~~~~~~~l~~~~~~~a~~ 24 (62)
++...+.+.+++.++..+|.+
T Consensus 50 edk~lEeLadllEvi~~ia~a 70 (95)
T COG4997 50 EDKNLEELADLLEVISRIAEA 70 (95)
T ss_pred hcccHHHHHHHHHHHHHHHHH
Confidence 466778899999999999876
No 61
>KOG1611|consensus
Probab=21.94 E-value=1.2e+02 Score=20.80 Aligned_cols=10 Identities=20% Similarity=0.431 Sum_probs=9.0
Q ss_pred cCceEEEEec
Q psy7292 27 IRNYRVVVNN 36 (62)
Q Consensus 27 ~~G~~i~~N~ 36 (62)
.+|+++++||
T Consensus 82 ~~GlnlLinN 91 (249)
T KOG1611|consen 82 SDGLNLLINN 91 (249)
T ss_pred cCCceEEEec
Confidence 5899999998
No 62
>PF15149 CATSPERB: Cation channel sperm-associated protein subunit beta protein family
Probab=20.07 E-value=1.8e+02 Score=22.21 Aligned_cols=44 Identities=7% Similarity=-0.055 Sum_probs=30.5
Q ss_pred CCHHHHHHHHHHHHHHHHh-hc-cCceEEEEecCccCCcccceeeeeeeCC
Q psy7292 6 LDIAILGHLMIVAKKVAAK-KL-IRNYRVVVNNGWEAVQFSGHLHLHVLGG 54 (62)
Q Consensus 6 ~~~~~~~~l~~~~~~~a~~-~~-~~G~~i~~N~G~~aGQ~V~H~H~Hiip~ 54 (62)
..++.+.+|-...+.+... .+ |.|+|+.+ -|-+.||+-.=+|||
T Consensus 424 ~~~~~v~k~k~~le~~l~~~vYNP~gLnlsi-----~GSeLFHFRVsvvpG 469 (540)
T PF15149_consen 424 NVPENVKKMKNYLEPILNSPVYNPLGLNLSI-----KGSELFHFRVSVVPG 469 (540)
T ss_pred cCCHHHHHHHHHHHhhcCcceeCcccceEEE-----EecceeEEEEEeecC
Confidence 3444555555555544444 56 78999866 467899999999998
Done!