Query psy7292
Match_columns 62
No_of_seqs 115 out of 1053
Neff 6.6
Searched_HMMs 29240
Date Fri Aug 16 22:59:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7292.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7292hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3o1c_A Histidine triad nucleot 99.9 3.6E-23 1.2E-27 124.0 4.6 61 2-62 65-126 (126)
2 3n1s_A HIT-like protein HINT; 99.8 1.5E-21 5E-26 116.1 4.9 60 2-61 53-114 (119)
3 3oj7_A Putative histidine tria 99.8 9E-21 3.1E-25 111.9 6.7 60 2-61 57-116 (117)
4 1xqu_A HIT family hydrolase; p 99.8 2.4E-19 8.3E-24 110.4 5.5 60 2-61 85-146 (147)
5 4egu_A Histidine triad (HIT) p 99.8 6.4E-19 2.2E-23 104.0 4.7 57 3-59 55-113 (119)
6 1fit_A FragIle histidine prote 99.7 6.8E-18 2.3E-22 102.7 5.6 58 2-59 46-107 (147)
7 3ksv_A Uncharacterized protein 99.7 3.2E-17 1.1E-21 100.8 6.8 55 2-56 58-116 (149)
8 3imi_A HIT family protein; str 99.7 1.1E-17 3.8E-22 102.1 4.7 55 2-56 56-114 (147)
9 3o0m_A HIT family protein; ssg 99.7 1.6E-17 5.3E-22 101.7 5.3 55 2-56 52-111 (149)
10 3lb5_A HIT-like protein involv 99.7 2.9E-17 9.9E-22 102.2 5.7 55 2-56 75-133 (161)
11 3l7x_A SMU.412C, putative HIT- 99.7 4.6E-17 1.6E-21 102.5 4.6 55 2-56 83-141 (173)
12 2eo4_A 150AA long hypothetical 99.7 1.4E-16 4.6E-21 97.1 5.8 55 2-56 46-104 (149)
13 1y23_A HIT, histidine triad pr 99.6 8.1E-17 2.8E-21 97.4 3.1 55 2-56 52-110 (145)
14 1ems_A Nitfhit, NIT-fragIle hi 99.6 1.8E-15 6.1E-20 104.1 5.4 58 2-59 342-403 (440)
15 3r6f_A HIT family protein; str 99.6 2.4E-15 8.3E-20 90.6 3.8 51 2-55 51-102 (135)
16 3ano_A AP-4-A phosphorylase; d 99.5 1.2E-14 4.1E-19 94.5 5.4 56 2-57 117-177 (218)
17 3ohe_A Histidine triad (HIT) p 99.5 1.8E-14 6.3E-19 87.6 4.9 50 2-56 46-99 (137)
18 3nrd_A Histidine triad (HIT) p 99.5 3.1E-14 1.1E-18 86.3 5.1 50 2-56 48-101 (135)
19 3i4s_A Histidine triad protein 99.5 2.6E-14 9E-19 88.3 4.7 50 2-56 51-104 (149)
20 3i24_A HIT family hydrolase; s 99.5 6.2E-14 2.1E-18 86.5 4.7 50 2-56 46-99 (149)
21 3p0t_A Uncharacterized protein 99.4 2.3E-13 7.7E-18 81.9 4.9 51 2-57 52-106 (138)
22 2oik_A Histidine triad (HIT) p 99.4 8.2E-13 2.8E-17 80.8 5.4 50 2-56 53-106 (154)
23 1z84_A Galactose-1-phosphate u 99.2 1.4E-11 4.7E-16 84.1 6.8 55 2-56 258-320 (351)
24 1gup_A Galactose-1-phosphate u 99.1 2.7E-10 9.2E-15 77.5 6.8 52 2-53 243-301 (348)
25 3sp4_A Aprataxin-like protein; 97.7 6.8E-06 2.3E-10 53.1 0.9 48 8-55 66-126 (204)
26 1z84_A Galactose-1-phosphate u 97.2 0.00087 3E-08 45.6 6.0 52 2-53 136-191 (351)
27 3bl9_A Scavenger mRNA-decappin 96.2 0.01 3.6E-07 40.1 5.4 49 2-54 196-247 (301)
28 1vlr_A MRNA decapping enzyme; 95.9 0.015 5.1E-07 40.2 5.4 49 2-54 243-294 (350)
29 3vg8_G Hypothetical protein TT 91.4 0.19 6.4E-06 29.7 3.0 24 28-52 77-100 (116)
30 1gup_A Galactose-1-phosphate u 87.9 1.5 5E-05 29.5 5.8 52 2-53 118-171 (348)
31 2cs7_A Pneumococcal histidine 50.9 4 0.00014 21.1 0.4 17 42-58 25-42 (55)
32 1r5t_A Cytidine deaminase; zin 50.3 22 0.00075 21.0 3.7 26 1-26 1-26 (142)
33 1omh_A TRWC protein; protein-D 32.9 17 0.00058 24.1 1.3 9 44-52 157-165 (293)
34 2z3g_A Blasticidin-S deaminase 32.5 26 0.00087 20.3 1.9 21 12-32 8-29 (130)
35 2pof_A CDP-diacylglycerol pyro 31.5 34 0.0011 22.2 2.5 25 26-52 95-120 (227)
36 3oj6_A Blasticidin-S deaminase 31.2 63 0.0022 19.5 3.6 23 1-24 22-44 (158)
37 4g6v_B CDII; tRNAse, toxin, im 27.4 58 0.002 18.7 2.8 39 12-50 72-110 (111)
38 3l6t_A TRAI, mobilization prot 26.8 25 0.00087 23.4 1.4 10 43-52 158-167 (302)
39 2q7t_A Protein TRAI, DNA helic 25.4 27 0.00093 23.2 1.3 9 44-52 153-161 (301)
40 3qbx_A Anhydro-N-acetylmuramic 25.0 30 0.001 23.8 1.5 7 41-47 95-101 (371)
41 4fai_A CG5976, isoform B; alph 24.7 1.5E+02 0.005 19.2 4.8 36 7-42 130-170 (330)
42 3cqy_A Anhydro-N-acetylmuramic 24.6 28 0.00097 23.9 1.3 6 41-46 99-104 (370)
43 4fuu_A Leucine aminopeptidase; 20.6 1.7E+02 0.0059 18.5 4.8 35 8-42 129-163 (309)
44 2fr5_A Cytidine deaminase; tet 20.3 75 0.0026 18.8 2.4 26 7-32 11-38 (146)
No 1
>3o1c_A Histidine triad nucleotide-binding protein 1; hydrolase, HINT protein, HIT protein, adenosine 5'- monophosphoramidase; HET: ADN; 1.08A {Oryctolagus cuniculus} SCOP: d.13.1.1 PDB: 3llj_A* 1rzy_A* 3qgz_A* 3o1z_A 3o1x_A* 4eqe_A* 4eqg_A* 4eqh_A* 3tw2_A* 1kpb_A 1kpf_A* 1kpa_A 1kpc_A 1av5_A* 1kpe_A* 4rhn_A* 3rhn_A* 5rhn_A* 6rhn_A
Probab=99.88 E-value=3.6e-23 Score=124.00 Aligned_cols=61 Identities=54% Similarity=0.915 Sum_probs=54.9
Q ss_pred CCCcCCHHHHHHHHHHHHHHHHh-hccCceEEEEecCccCCcccceeeeeeeCCCCCCCCCC
Q psy7292 2 KTKSLDIAILGHLMIVAKKVAAK-KLIRNYRVVVNNGWEAVQFSGHLHLHVLGGRPLHWPPG 62 (62)
Q Consensus 2 ~l~~~~~~~~~~l~~~~~~~a~~-~~~~G~~i~~N~G~~aGQ~V~H~H~Hiip~~~l~~~~~ 62 (62)
++++.+.+++.+++.++++++++ ..++|||+++|+|+.|||+|+|+|+|||||++|+||||
T Consensus 65 dL~~~e~~~l~~l~~~~~~~~~~~~~~~g~ni~~n~g~~agq~v~HlH~Hiipr~~~~~~~~ 126 (126)
T 3o1c_A 65 AAEDADESLLGHLMIVGKKCAADLGLKKGYRMVVNEGSDGGQSVYHVHLHVLGGRQMNWPPG 126 (126)
T ss_dssp GCCGGGHHHHHHHHHHHHHHHHHTTCTTCEEEECCCHHHHTCCSSSCCEEEEESSCCCSSCC
T ss_pred hCchhHHHHHHHHHHHHHHHHHHhCCCCCeEEEEecCCccCCccCEeEEEEeCCcccCCCCC
Confidence 45556667799999999999987 55789999999999999999999999999999999997
No 2
>3n1s_A HIT-like protein HINT; histidine triad nucleotide binding protein, GMP, hydro; HET: 5GP; 1.45A {Escherichia coli} SCOP: d.13.1.0 PDB: 3n1t_A*
Probab=99.84 E-value=1.5e-21 Score=116.14 Aligned_cols=60 Identities=32% Similarity=0.487 Sum_probs=52.9
Q ss_pred CCCcCCHHHHHHHHHHHHHHHHh-hc-cCceEEEEecCccCCcccceeeeeeeCCCCCCCCC
Q psy7292 2 KTKSLDIAILGHLMIVAKKVAAK-KL-IRNYRVVVNNGWEAVQFSGHLHLHVLGGRPLHWPP 61 (62)
Q Consensus 2 ~l~~~~~~~~~~l~~~~~~~a~~-~~-~~G~~i~~N~G~~aGQ~V~H~H~Hiip~~~l~~~~ 61 (62)
++++.+.+++.+++.++++++++ .+ ++|||+++|+|+.+||+|+|+|+|||||++++|+.
T Consensus 53 dL~~~e~~~l~~l~~~~~~v~~~~~~~~~g~ni~~n~g~~agq~V~HlH~Hiipr~~~~~~~ 114 (119)
T 3n1s_A 53 DVSAEHEQALGRMITVAAKIAEQEGIAEDGYRLIMNTNRHGGQEVYHIHMHLLGGRPLGPML 114 (119)
T ss_dssp GCCGGGHHHHHHHHHHHHHHHHHTTCTTTCEEEEEEEHHHHTCCSSSCCEEEEESSCCCCSS
T ss_pred HcCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEEeCCCCcCCCcCEEEEEEeCCcccCccc
Confidence 34445555899999999999998 77 78999999999999999999999999999999864
No 3
>3oj7_A Putative histidine triad family protein; hydrolase, structural genomics, seattle structural genomics for infectious disease, ssgcid; 1.40A {Entamoeba histolytica} SCOP: d.13.1.0 PDB: 3omf_A* 3oxk_A*
Probab=99.83 E-value=9e-21 Score=111.90 Aligned_cols=60 Identities=32% Similarity=0.542 Sum_probs=52.8
Q ss_pred CCCcCCHHHHHHHHHHHHHHHHhhccCceEEEEecCccCCcccceeeeeeeCCCCCCCCC
Q psy7292 2 KTKSLDIAILGHLMIVAKKVAAKKLIRNYRVVVNNGWEAVQFSGHLHLHVLGGRPLHWPP 61 (62)
Q Consensus 2 ~l~~~~~~~~~~l~~~~~~~a~~~~~~G~~i~~N~G~~aGQ~V~H~H~Hiip~~~l~~~~ 61 (62)
++++.+.+++.+++.++++++++.+++|||+++|+|+.+||+|+|+|+|||||++++||+
T Consensus 57 dL~~~e~~~l~~l~~~~~~~~~~~~~~g~ni~~n~g~~agq~v~H~H~Hiipr~~~~~~~ 116 (117)
T 3oj7_A 57 EITEENEAFIGKVLYKVSLIGKKECPEGYRVVNNIGEDAGQTVKHIHFHILGGKKLAWDK 116 (117)
T ss_dssp GCCTTTHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTTTCCSSSCCEEEEESSCCCCCC
T ss_pred HCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEcCCCCCCeeeeEEEEEEeCCCCCCCCC
Confidence 455666678999999999998875556999999999999999999999999999999986
No 4
>1xqu_A HIT family hydrolase; protein STRU initiative, PSI, southeast collaboratory for structural GEN secsg; 2.30A {Clostridium thermocellum} SCOP: d.13.1.1
Probab=99.78 E-value=2.4e-19 Score=110.44 Aligned_cols=60 Identities=32% Similarity=0.375 Sum_probs=53.7
Q ss_pred CCCcCCHHHHHHHHHHHHHHHHh-hc-cCceEEEEecCccCCcccceeeeeeeCCCCCCCCC
Q psy7292 2 KTKSLDIAILGHLMIVAKKVAAK-KL-IRNYRVVVNNGWEAVQFSGHLHLHVLGGRPLHWPP 61 (62)
Q Consensus 2 ~l~~~~~~~~~~l~~~~~~~a~~-~~-~~G~~i~~N~G~~aGQ~V~H~H~Hiip~~~l~~~~ 61 (62)
++++.+.+++.+++.+++++++. .. ++|||+++|+|+.+||+|+|+|+||||+++++||+
T Consensus 85 dL~~~e~~~l~~l~~~~~~v~~~~~~~~~gyni~~n~g~~aGq~v~HlHlHiiP~~~~~wp~ 146 (147)
T 1xqu_A 85 EINESNAQILIDIHKAANKVAEDLGIAEKGYRLITNCGVAAGQTVFHLHYHLLGGVDMGPKI 146 (147)
T ss_dssp GCCTTTTTHHHHHHHHHHHHHHHTTCTTTCEEEECCCSTTTTCCSCSCCEEEEESSCCCSCC
T ss_pred HCCHHHHHHHHHHHHHHHHHHHHhCCCCCCEEEEEecCcccCCCccEEEEEEeCCCcCCCCC
Confidence 45556667799999999999988 65 68999999999999999999999999999999986
No 5
>4egu_A Histidine triad (HIT) protein; structural genomics, center for structural genomics of infec diseases, csgid, HIT domain, unknown function; HET: 5GP; 0.95A {Clostridium difficile}
Probab=99.76 E-value=6.4e-19 Score=104.03 Aligned_cols=57 Identities=30% Similarity=0.496 Sum_probs=49.7
Q ss_pred CCcCCHHHHHHHHHHHHHHHHh-hc-cCceEEEEecCccCCcccceeeeeeeCCCCCCC
Q psy7292 3 TKSLDIAILGHLMIVAKKVAAK-KL-IRNYRVVVNNGWEAVQFSGHLHLHVLGGRPLHW 59 (62)
Q Consensus 3 l~~~~~~~~~~l~~~~~~~a~~-~~-~~G~~i~~N~G~~aGQ~V~H~H~Hiip~~~l~~ 59 (62)
+++.+.+++.+++.+++++++. .+ ++|||+++|+|+.+||+|+|+|+|||||+++++
T Consensus 55 L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~ni~~n~g~~agq~v~HlH~Hiip~~~~~~ 113 (119)
T 4egu_A 55 IPDKEMDIVSHIHVVINKIAKEKGFDQTGFRVINNCGSDGGQEVKHLHYHILAGKKLPN 113 (119)
T ss_dssp SCGGGTHHHHHHHHHHHHHHHHHTHHHHCEEEEEEETTTTTCCSCSCCEEEEESSCCCC
T ss_pred CCHhHHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCCCCCCcCEEEEEEeCCcccCc
Confidence 4444455899999999999987 66 689999999999999999999999999999875
No 6
>1fit_A FragIle histidine protein; FHIT, fragIle histidine triad protein, putative human tumor suppressor, advanced photon source, APS; HET: FRU; 1.85A {Homo sapiens} SCOP: d.13.1.1 PDB: 1fhi_A* 2fit_A* 3fit_A* 4fit_A 5fit_A* 6fit_A* 2fhi_A*
Probab=99.72 E-value=6.8e-18 Score=102.74 Aligned_cols=58 Identities=21% Similarity=0.275 Sum_probs=51.4
Q ss_pred CCCcCCHHHHHHHHHHHHHHHHh---hc-cCceEEEEecCccCCcccceeeeeeeCCCCCCC
Q psy7292 2 KTKSLDIAILGHLMIVAKKVAAK---KL-IRNYRVVVNNGWEAVQFSGHLHLHVLGGRPLHW 59 (62)
Q Consensus 2 ~l~~~~~~~~~~l~~~~~~~a~~---~~-~~G~~i~~N~G~~aGQ~V~H~H~Hiip~~~l~~ 59 (62)
++.+++++++.+|+..++++++. .+ ++|||+++|+|+.+||+|+|+|+|||||.+.+|
T Consensus 46 ~~~dL~~~e~~~l~~~~~~v~~~l~~~~~~~~~ni~~n~g~~agq~v~HlH~HiiPr~~~d~ 107 (147)
T 1fit_A 46 RFHDLRPDEVADLFQTTQRVGTVVEKHFHGTSLTFSMQDGPEAGQTVKHVHVHVLPRKAGDF 107 (147)
T ss_dssp SGGGSCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEECCSGGGTCCSSSCCEEEEEECTTC-
T ss_pred ChhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCccCCCccEEEEEEECCcCCCC
Confidence 46788899999999999999997 35 689999999999999999999999999877653
No 7
>3ksv_A Uncharacterized protein; HIT family, structural genomics, structural genomics of PATH protozoa consortium, SGPP, unknown function; 1.90A {Leishmania major} SCOP: d.13.1.0
Probab=99.70 E-value=3.2e-17 Score=100.85 Aligned_cols=55 Identities=22% Similarity=0.228 Sum_probs=49.8
Q ss_pred CCCcCCHHHHHHHHHHHHHHHHh---hc-cCceEEEEecCccCCcccceeeeeeeCCCC
Q psy7292 2 KTKSLDIAILGHLMIVAKKVAAK---KL-IRNYRVVVNNGWEAVQFSGHLHLHVLGGRP 56 (62)
Q Consensus 2 ~l~~~~~~~~~~l~~~~~~~a~~---~~-~~G~~i~~N~G~~aGQ~V~H~H~Hiip~~~ 56 (62)
++.+++++++.+|+.+++++++. .+ ++|||+++|+|+.+||+|+|+|+|||||+.
T Consensus 58 ~l~dL~~~e~~~l~~~~~~v~~~l~~~~~~~g~ni~~n~g~~aGq~v~HlHiHiiPR~~ 116 (149)
T 3ksv_A 58 CLHELGMEDAADVGVLLAKASRAVAGPDGSMQYNVLQNNGSLAHQEVPHVHFHIIPKTD 116 (149)
T ss_dssp SGGGSCHHHHHHHHHHHHHHHHHHHCTTSCCEEEEEECCSTTTTCCSSSCCEEEEEECC
T ss_pred hhhhCCHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEEecCcccCCCCCEEEEEEEeccc
Confidence 46788999999999999999998 35 689999999999999999999999999754
No 8
>3imi_A HIT family protein; structural genomics, infectious diseases for structural genomics of infectious diseases, unknown FUN csgid; 2.01A {Bacillus anthracis str} SCOP: d.13.1.1
Probab=99.70 E-value=1.1e-17 Score=102.14 Aligned_cols=55 Identities=27% Similarity=0.333 Sum_probs=50.2
Q ss_pred CCCcCCHHHHHHHHHHHHHHHHh---hc-cCceEEEEecCccCCcccceeeeeeeCCCC
Q psy7292 2 KTKSLDIAILGHLMIVAKKVAAK---KL-IRNYRVVVNNGWEAVQFSGHLHLHVLGGRP 56 (62)
Q Consensus 2 ~l~~~~~~~~~~l~~~~~~~a~~---~~-~~G~~i~~N~G~~aGQ~V~H~H~Hiip~~~ 56 (62)
++.+++++++.+|+..++++++. .+ ++|||+++|+|+.+||+|+|+|+|||||..
T Consensus 56 ~l~dL~~~e~~~l~~~~~~v~~~l~~~~~~~~~ni~~n~g~~aGq~v~HlHiHiiPR~~ 114 (147)
T 3imi_A 56 DIFALTPEIASHIFSVVPKIANAIKAEFNPVGFNLLNNNGEKAGQTVFHFHLHLIPRYG 114 (147)
T ss_dssp SGGGCCHHHHHHHHHTHHHHHHHHHHHHCCSEEEEEEEESGGGTCCSSSCCEEEEEECS
T ss_pred ChhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCcccCCCcCEEEEEEeCCcc
Confidence 46788999999999999999997 35 689999999999999999999999999865
No 9
>3o0m_A HIT family protein; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, hydrola structural genomics; HET: AMP; 1.90A {Mycobacterium smegmatis str}
Probab=99.70 E-value=1.6e-17 Score=101.68 Aligned_cols=55 Identities=24% Similarity=0.335 Sum_probs=49.9
Q ss_pred CCCcCCHHHHHHHHHHHHHHHHh---h-c-cCceEEEEecCccCCcccceeeeeeeCCCC
Q psy7292 2 KTKSLDIAILGHLMIVAKKVAAK---K-L-IRNYRVVVNNGWEAVQFSGHLHLHVLGGRP 56 (62)
Q Consensus 2 ~l~~~~~~~~~~l~~~~~~~a~~---~-~-~~G~~i~~N~G~~aGQ~V~H~H~Hiip~~~ 56 (62)
++.+++++++.+|+.+++++++. . + ++|||+++|+|+.+||+|+|+|+|||||+.
T Consensus 52 ~l~dl~~~~~~~l~~~~~~v~~~l~~~~~~~~~~ni~~n~g~~aGq~v~HlHiHiiPR~~ 111 (149)
T 3o0m_A 52 DLTDTPPETVAGMAAVGQRIARAARESGLHADGNNIAINDGKAAFQTVFHIHLHVVPRRN 111 (149)
T ss_dssp STTTSCHHHHHHHHHHHHHHHHHHHHSTTCCSEEEEECCCSGGGTCCSSSCCEEEEEECT
T ss_pred CHhHCCHHHHHHHHHHHHHHHHHHHHcCCCCCceEEEEecCCCCCCccceEEEEEECCcc
Confidence 46788999999999999999986 3 6 689999999999999999999999999854
No 10
>3lb5_A HIT-like protein involved in cell-cycle regulatio; niaid, seattle structural genomics center for infectious DIS ssgcid, histidine triad; 1.90A {Bartonella henselae}
Probab=99.69 E-value=2.9e-17 Score=102.18 Aligned_cols=55 Identities=20% Similarity=0.182 Sum_probs=50.2
Q ss_pred CCCcCCHHHHHHHHHHHHHHHHh---hc-cCceEEEEecCccCCcccceeeeeeeCCCC
Q psy7292 2 KTKSLDIAILGHLMIVAKKVAAK---KL-IRNYRVVVNNGWEAVQFSGHLHLHVLGGRP 56 (62)
Q Consensus 2 ~l~~~~~~~~~~l~~~~~~~a~~---~~-~~G~~i~~N~G~~aGQ~V~H~H~Hiip~~~ 56 (62)
++.+++++++.+|+.+++++++. .+ ++|||+++|+|+.+||+|+|+|+|||||+.
T Consensus 75 ~l~dL~~ee~~~l~~~~~~v~~~l~~~~~~~g~ni~~n~g~~aGq~V~HlHiHiiPR~~ 133 (161)
T 3lb5_A 75 NLLDADTETLFPVIKAVQKIAKAVKKAFQADGITVMQFNEAASQQTVYHLHFHIIPRME 133 (161)
T ss_dssp STTTSCHHHHHHHHHHHHHHHHHHHHHHTCSEEEEEEEESGGGTCCSCSCCEEEEEECT
T ss_pred hhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEecCcccCCCCCEEEEEEEcccC
Confidence 46788999999999999999997 45 689999999999999999999999999854
No 11
>3l7x_A SMU.412C, putative HIT-like protein involved in cell-cycle regulation; 1.70A {Streptococcus mutans}
Probab=99.67 E-value=4.6e-17 Score=102.52 Aligned_cols=55 Identities=18% Similarity=0.142 Sum_probs=50.0
Q ss_pred CCCcCCHHHHHHHHHHHHHHHHh---hc-cCceEEEEecCccCCcccceeeeeeeCCCC
Q psy7292 2 KTKSLDIAILGHLMIVAKKVAAK---KL-IRNYRVVVNNGWEAVQFSGHLHLHVLGGRP 56 (62)
Q Consensus 2 ~l~~~~~~~~~~l~~~~~~~a~~---~~-~~G~~i~~N~G~~aGQ~V~H~H~Hiip~~~ 56 (62)
++.+++++++.+|+.+++++++. .+ ++|||+++|+|+.+||+|+|+|+|||||+.
T Consensus 83 ~l~dL~~ee~~~L~~~~~~v~~~l~~~~~~~g~ni~~n~g~~aGq~V~HlHiHiIPR~~ 141 (173)
T 3l7x_A 83 NALEMTQTQAANLFARIPKIARALQKATKADGLNIINNNEETAGQTVFHAHVHLVPRFA 141 (173)
T ss_dssp CGGGCCHHHHHHHHHTHHHHHHHHHHHHTCSEEEEEECCSGGGTCCSCSCCEEEEEECC
T ss_pred ChhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEecCcccCCCcCEEEEEEEeccc
Confidence 46788999999999999999997 35 689999999999999999999999999865
No 12
>2eo4_A 150AA long hypothetical histidine triad nucleotid protein; HIT family, structural genomics, NPPSFA; 1.80A {Sulfolobus tokodaii}
Probab=99.66 E-value=1.4e-16 Score=97.14 Aligned_cols=55 Identities=27% Similarity=0.273 Sum_probs=49.6
Q ss_pred CCCcCCHHHHHHHHHHHHHHHHh---hc-cCceEEEEecCccCCcccceeeeeeeCCCC
Q psy7292 2 KTKSLDIAILGHLMIVAKKVAAK---KL-IRNYRVVVNNGWEAVQFSGHLHLHVLGGRP 56 (62)
Q Consensus 2 ~l~~~~~~~~~~l~~~~~~~a~~---~~-~~G~~i~~N~G~~aGQ~V~H~H~Hiip~~~ 56 (62)
++.+++++++.+|+..++++++. .+ ++|||+++|+|+.+||+|+|+|+|||||..
T Consensus 46 ~~~dL~~~e~~~l~~~~~~v~~~l~~~~~~~~~ni~~n~g~~~gq~v~HlHiHviPr~~ 104 (149)
T 2eo4_A 46 NYLEADEDTLAELAKVVKLVSLGIKDAVKADGLRLLTNIGRSAGQVIFHLHVHIIPTWE 104 (149)
T ss_dssp SGGGSCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECCCSGGGTCCSCSCCEEEEEECS
T ss_pred CHhHCCHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEecCcCCCCCcCEEEEEEECCcC
Confidence 46788999999999999999987 35 689999999999999999999999999753
No 13
>1y23_A HIT, histidine triad protein; HIT protein, PKCI-1, cell-cycle regulation, NYSGXRC, structural genomics, protein structure initiative; 2.30A {Bacillus subtilis} SCOP: d.13.1.1
Probab=99.64 E-value=8.1e-17 Score=97.38 Aligned_cols=55 Identities=18% Similarity=0.175 Sum_probs=49.5
Q ss_pred CCCcCCHHHHHHHHHHHHHHHHh---hc-cCceEEEEecCccCCcccceeeeeeeCCCC
Q psy7292 2 KTKSLDIAILGHLMIVAKKVAAK---KL-IRNYRVVVNNGWEAVQFSGHLHLHVLGGRP 56 (62)
Q Consensus 2 ~l~~~~~~~~~~l~~~~~~~a~~---~~-~~G~~i~~N~G~~aGQ~V~H~H~Hiip~~~ 56 (62)
++.+++++++.+|+..++++++. .+ ++|||+++|+|+.+||+|+|+|+|||||..
T Consensus 52 ~l~dL~~~~~~~l~~~~~~v~~~l~~~~~~~~~ni~~n~g~~~g~~v~HlH~HiiPr~~ 110 (145)
T 1y23_A 52 NVYEFTDELAKQYFHAVPKIARAIRDEFEPIGLNTLNNNGEKAGQSVFHYHMHIIPRYG 110 (145)
T ss_dssp SGGGCCHHHHHTTTTHHHHHHHHHHHHHCCSEEEEEEEESGGGTCCSSSCCEEEEEECS
T ss_pred hHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCcCCCCCcCEEEEEEEcccc
Confidence 46788999999999999999987 35 689999999999999999999999999764
No 14
>1ems_A Nitfhit, NIT-fragIle histidine triad fusion protein; WORM, nitrilase, nucleotide-binding protein, cancer; 2.80A {Caenorhabditis elegans} SCOP: d.13.1.1 d.160.1.1
Probab=99.58 E-value=1.8e-15 Score=104.06 Aligned_cols=58 Identities=33% Similarity=0.414 Sum_probs=51.9
Q ss_pred CCCcCCHHHHHHHHHHHHHHHHh---hc-cCceEEEEecCccCCcccceeeeeeeCCCCCCC
Q psy7292 2 KTKSLDIAILGHLMIVAKKVAAK---KL-IRNYRVVVNNGWEAVQFSGHLHLHVLGGRPLHW 59 (62)
Q Consensus 2 ~l~~~~~~~~~~l~~~~~~~a~~---~~-~~G~~i~~N~G~~aGQ~V~H~H~Hiip~~~l~~ 59 (62)
++.+++++++.+|+..++++++. .+ ++|||+++|+|+.+||+|+|+|+|||||.+.+|
T Consensus 342 ~~~~l~~~~~~~l~~~~~~v~~~l~~~~~~~~~n~~~~~g~~~gq~v~HlH~Hiipr~~~d~ 403 (440)
T 1ems_A 342 RLTDLTDAETADLFIVAKKVQAMLEKHHNVTSTTICVQDGKDAGQTVPHVHIHILPRRAGDF 403 (440)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECCCSGGGTCCSSSCCEEEEEECSSCC
T ss_pred ChhHCCHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEecCCCCCCCccEEEEEEeCCCCCCC
Confidence 46788899999999999999997 35 689999999999999999999999999987653
No 15
>3r6f_A HIT family protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, protozoan parasite; 1.85A {Encephalitozoon cuniculi}
Probab=99.55 E-value=2.4e-15 Score=90.64 Aligned_cols=51 Identities=22% Similarity=0.264 Sum_probs=45.0
Q ss_pred CCCcCCHHHHHHHHHHHHHHHHhhc-cCceEEEEecCccCCcccceeeeeeeCCC
Q psy7292 2 KTKSLDIAILGHLMIVAKKVAAKKL-IRNYRVVVNNGWEAVQFSGHLHLHVLGGR 55 (62)
Q Consensus 2 ~l~~~~~~~~~~l~~~~~~~a~~~~-~~G~~i~~N~G~~aGQ~V~H~H~Hiip~~ 55 (62)
++.+++++++.+|+.++++++++ + ++|||+++|+|+ ||+|+|+|+|||||.
T Consensus 51 ~l~dL~~~~~~~l~~~~~~v~~~-~~~~~~ni~~n~g~--gq~v~HlH~HiiPR~ 102 (135)
T 3r6f_A 51 YLHNYKPEELSGVLDTIRHLVQK-FGFERYNILQNNGN--HQEVFHVHFHVIPFV 102 (135)
T ss_dssp SGGGSCGGGGTTHHHHHHHHHHH-HTCCSEEEECCSSS--SCSSSSCCEEEEECC
T ss_pred CHhHCCHHHHHHHHHHHHHHHHH-hCCCCeEEEEEcCC--CCCccEEEEEEeccc
Confidence 46678888899999999999875 3 578999999999 999999999999985
No 16
>3ano_A AP-4-A phosphorylase; diadenosine polyphosphate, HIT transferase; HET: PG4; 1.89A {Mycobacterium tuberculosis}
Probab=99.52 E-value=1.2e-14 Score=94.50 Aligned_cols=56 Identities=23% Similarity=0.144 Sum_probs=48.8
Q ss_pred CCCcCCHHHHHHHHHHHHHHHHh---hc-cCceEEEEecCccCCccc-ceeeeeeeCCCCC
Q psy7292 2 KTKSLDIAILGHLMIVAKKVAAK---KL-IRNYRVVVNNGWEAVQFS-GHLHLHVLGGRPL 57 (62)
Q Consensus 2 ~l~~~~~~~~~~l~~~~~~~a~~---~~-~~G~~i~~N~G~~aGQ~V-~H~H~Hiip~~~l 57 (62)
++.++++++..+|+..++++++. .+ ++|||+++|+|+.+||+| +|+|+|||||..-
T Consensus 117 ~l~dL~~ee~~~L~~l~~~v~~~l~~~~~~~g~ni~~n~G~~aGq~V~~HlHiHIIPR~~g 177 (218)
T 3ano_A 117 ELEDLTDLESAELMAFTQKAIRVIKNVSRPHGFNVGLNLGTSAGGSLAEHLHVHVVPRWGG 177 (218)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHHHHCCCSEEEEEEEESGGGTCTTTTSCCEEEEEECTT
T ss_pred ChhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEecCcccCCcccCEEEEEEEcccCC
Confidence 46788888888999888888886 45 689999999999999999 9999999998653
No 17
>3ohe_A Histidine triad (HIT) protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; HET: MSE; 1.20A {Marinobacter aquaeolei}
Probab=99.50 E-value=1.8e-14 Score=87.59 Aligned_cols=50 Identities=14% Similarity=0.097 Sum_probs=43.3
Q ss_pred CCCcCCHHHHHHHHHHHHHHHHh---hc-cCceEEEEecCccCCcccceeeeeeeCCCC
Q psy7292 2 KTKSLDIAILGHLMIVAKKVAAK---KL-IRNYRVVVNNGWEAVQFSGHLHLHVLGGRP 56 (62)
Q Consensus 2 ~l~~~~~~~~~~l~~~~~~~a~~---~~-~~G~~i~~N~G~~aGQ~V~H~H~Hiip~~~ 56 (62)
++.++++++..+++..+++++++ .+ ++|+|+. .+||+|+|+|+|||||++
T Consensus 46 ~l~dl~~~~~~~l~~~~~~v~~~l~~~~~~~~~N~~-----~aGq~V~HlH~HviPR~~ 99 (137)
T 3ohe_A 46 EIYELPNEQQQRLLFESSALSEGMMELFGGDKMNVA-----ALGNMVPQLHLHHIVRYQ 99 (137)
T ss_dssp SGGGSCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEE-----ECCSSCCSCCEEEEEECT
T ss_pred ChHHCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEe-----eccCcCCEEEEEEeCCCC
Confidence 46788999999999999999987 45 6888775 789999999999999874
No 18
>3nrd_A Histidine triad (HIT) protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.06A {Sinorhizobium meliloti}
Probab=99.49 E-value=3.1e-14 Score=86.29 Aligned_cols=50 Identities=20% Similarity=0.157 Sum_probs=43.0
Q ss_pred CCCcCCHHHHHHHHHHHHHHHHh---hc-cCceEEEEecCccCCcccceeeeeeeCCCC
Q psy7292 2 KTKSLDIAILGHLMIVAKKVAAK---KL-IRNYRVVVNNGWEAVQFSGHLHLHVLGGRP 56 (62)
Q Consensus 2 ~l~~~~~~~~~~l~~~~~~~a~~---~~-~~G~~i~~N~G~~aGQ~V~H~H~Hiip~~~ 56 (62)
++.++++++..+++..+++++++ .+ ++|+|+. .+||+|+|+|+|||||++
T Consensus 48 ~l~dl~~~~~~~l~~~~~~v~~~l~~~~~~~~~N~~-----~aGq~V~HlH~HviPR~~ 101 (135)
T 3nrd_A 48 EVFELTPLDQAMLTFETNLVAAGLKKATGAEKINIG-----ALGNIVRQLHVHVIARRE 101 (135)
T ss_dssp SGGGSCHHHHHHHHHHHHHHHHHHHHHHTCSEEEEE-----ECCSSCCSCCEEEEEECT
T ss_pred ChHHCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEe-----eccCCCCEEEEEEecCCC
Confidence 46788999999999999999987 35 6898764 789999999999999865
No 19
>3i4s_A Histidine triad protein; hydrolase, phosphatase, HIT superfamily, PSI-2, NYSGXRC, STR genomics, protein structure initiative; 1.75A {Bradyrhizobium japonicum}
Probab=99.49 E-value=2.6e-14 Score=88.29 Aligned_cols=50 Identities=18% Similarity=0.261 Sum_probs=43.3
Q ss_pred CCCcCCHHHHHHHHHHHHHHHHh---hc-cCceEEEEecCccCCcccceeeeeeeCCCC
Q psy7292 2 KTKSLDIAILGHLMIVAKKVAAK---KL-IRNYRVVVNNGWEAVQFSGHLHLHVLGGRP 56 (62)
Q Consensus 2 ~l~~~~~~~~~~l~~~~~~~a~~---~~-~~G~~i~~N~G~~aGQ~V~H~H~Hiip~~~ 56 (62)
++.++++++..+++..+++++++ .+ ++|||+. .+||+|+|+|+|||||++
T Consensus 51 ~l~dL~~e~~~~l~~~~~~va~~l~~~~~~~g~N~~-----~aGq~V~HlH~HvIPR~~ 104 (149)
T 3i4s_A 51 EIIDLDEVQQAQLMTEISRVSRALKEITKCDKLNIA-----ALGNLVPQLHVHIIARRT 104 (149)
T ss_dssp SGGGSCHHHHHHHHHHHHHHHHHHHHHHTCSEEEEE-----ECCSSCCSCCEEEEEECT
T ss_pred ChhHCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEe-----ecCCcCCEEEEEEECCcC
Confidence 46788999999999999999998 35 6898763 789999999999999865
No 20
>3i24_A HIT family hydrolase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.50A {Vibrio fischeri ES114}
Probab=99.45 E-value=6.2e-14 Score=86.54 Aligned_cols=50 Identities=10% Similarity=0.075 Sum_probs=43.1
Q ss_pred CCCcCCHHHHHHHHHHHHHHHHh---hc-cCceEEEEecCccCCcccceeeeeeeCCCC
Q psy7292 2 KTKSLDIAILGHLMIVAKKVAAK---KL-IRNYRVVVNNGWEAVQFSGHLHLHVLGGRP 56 (62)
Q Consensus 2 ~l~~~~~~~~~~l~~~~~~~a~~---~~-~~G~~i~~N~G~~aGQ~V~H~H~Hiip~~~ 56 (62)
++.++++++..+++..+++++++ .+ ++|+|+. .+||+|+|+|+|||||++
T Consensus 46 ~l~dL~~e~~~~l~~~~~~va~al~~~~~~~~~Ni~-----~aGq~V~HlH~HvIPR~~ 99 (149)
T 3i24_A 46 EIHHMTDEQQIQFIKESSAVAQLLEDNFSPDKINIG-----ALGNLVPQLHIHHIARFT 99 (149)
T ss_dssp SGGGSCHHHHHHHHHHHHHHHHHHHHHHCCSEEEEE-----ECCSSCCSCCEEEEEECT
T ss_pred ChhHCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEh-----hhhCCCCEEEEEEeCCcc
Confidence 46788999999999999999987 35 6888775 489999999999999875
No 21
>3p0t_A Uncharacterized protein; ssgcid, HIT-like protein, mycobacerium paratuberculosis, STR genomics; 1.90A {Mycobacterium avium subsp}
Probab=99.41 E-value=2.3e-13 Score=81.89 Aligned_cols=51 Identities=24% Similarity=0.292 Sum_probs=43.4
Q ss_pred CCCcCCHHHHHHHHHHHHHHHHh---hc-cCceEEEEecCccCCcccceeeeeeeCCCCC
Q psy7292 2 KTKSLDIAILGHLMIVAKKVAAK---KL-IRNYRVVVNNGWEAVQFSGHLHLHVLGGRPL 57 (62)
Q Consensus 2 ~l~~~~~~~~~~l~~~~~~~a~~---~~-~~G~~i~~N~G~~aGQ~V~H~H~Hiip~~~l 57 (62)
++.+++++++.+|+..++++++. .+ ++++|+. .+||+|+|+|+|||||++.
T Consensus 52 ~l~dL~~~e~~~l~~~~~~v~~~l~~~~~~~~~n~~-----~~gq~v~HlH~HiiPr~~~ 106 (138)
T 3p0t_A 52 NWQDVDSAAFNRVMGVSQLIGKAVCKAFRTERSGLI-----IAGLEVPHLHVHVFPTRSL 106 (138)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHHHHHTCSEEEEE-----ECCSSCSSCCEEEEEESCG
T ss_pred chhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEE-----ECCcccCEEEEEEeccccC
Confidence 46788999999999999999997 45 6788774 4899999999999998753
No 22
>2oik_A Histidine triad (HIT) protein; HIT-like fold, structural genomics, joint center for structu genomics, JCSG; HET: MSE; 1.65A {Methylobacillus flagellatus} SCOP: d.13.1.1
Probab=99.37 E-value=8.2e-13 Score=80.76 Aligned_cols=50 Identities=22% Similarity=0.249 Sum_probs=43.4
Q ss_pred CCCcCCHHHHHHHHHHHHHHHHh---hc-cCceEEEEecCccCCcccceeeeeeeCCCC
Q psy7292 2 KTKSLDIAILGHLMIVAKKVAAK---KL-IRNYRVVVNNGWEAVQFSGHLHLHVLGGRP 56 (62)
Q Consensus 2 ~l~~~~~~~~~~l~~~~~~~a~~---~~-~~G~~i~~N~G~~aGQ~V~H~H~Hiip~~~ 56 (62)
++.++++++..+|+..++++++. .+ ++|||+. .+||+|+|+|+|||||.+
T Consensus 53 ~l~dL~~~~~~~l~~~~~~v~~~l~~~~~~~g~ni~-----~~gq~v~HlHiHiiPr~~ 106 (154)
T 2oik_A 53 EMSDLRPAERDHLMLVVFAVEEAVREVMRPDKINLA-----SLGNMTPHVHWHVIPRFK 106 (154)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHHHHHCCSEEEEE-----ECCSSSCSCEEEEEEECT
T ss_pred ChHHCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEhH-----HhCCCCCEEEEEEeCCCC
Confidence 46788999999999999999997 35 6899996 478999999999999865
No 23
>1z84_A Galactose-1-phosphate uridyl transferase-like protein; GALT, zinc, AMP, structural genomics, protein structure initiative, CESG; HET: AMP; 1.83A {Arabidopsis thaliana} SCOP: d.13.1.2 d.13.1.2 PDB: 1zwj_A 2q4h_A* 2q4l_A 2h39_A*
Probab=99.25 E-value=1.4e-11 Score=84.15 Aligned_cols=55 Identities=18% Similarity=0.063 Sum_probs=47.6
Q ss_pred CCCcCCHHHHHHHHHHHHHHHHh---hc-cCceEEEEecCccCC----cccceeeeeeeCCCC
Q psy7292 2 KTKSLDIAILGHLMIVAKKVAAK---KL-IRNYRVVVNNGWEAV----QFSGHLHLHVLGGRP 56 (62)
Q Consensus 2 ~l~~~~~~~~~~l~~~~~~~a~~---~~-~~G~~i~~N~G~~aG----Q~V~H~H~Hiip~~~ 56 (62)
++.++++++..+|..+++++++. .+ ++|||+++|+|+.+| |+++|+|+||+|+.+
T Consensus 258 ~l~dl~~~e~~~La~~l~~v~~~l~~~~~~~~yn~~~n~gp~~g~~~~q~v~HlHiHiiPR~~ 320 (351)
T 1z84_A 258 HFHHLDDVKAVDLGGLLKLMLQKIAKQLNDPPYNYMIHTSPLKVTESQLPYTHWFLQIVPQLS 320 (351)
T ss_dssp CGGGCCHHHHHHHHHHHHHHHHHHHHHTTSCCEEEEEECCCTTCCGGGGGGCCCEEEEEECCC
T ss_pred ChHHCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCccCCCCCCccceEEEEEEccCC
Confidence 45678888999999999999876 35 569999999999987 899999999999864
No 24
>1gup_A Galactose-1-phosphate uridylyltransferase; nucleotidyltransferase, galactose metabolism; HET: GDU; 1.80A {Escherichia coli} SCOP: d.13.1.2 d.13.1.2 PDB: 1guq_A* 1hxq_A* 1hxp_A*
Probab=99.08 E-value=2.7e-10 Score=77.49 Aligned_cols=52 Identities=17% Similarity=0.130 Sum_probs=44.8
Q ss_pred CCCcCCHHHHHHHHHHHHHHHHh---hc-cC-ceEEEEecCccC--CcccceeeeeeeC
Q psy7292 2 KTKSLDIAILGHLMIVAKKVAAK---KL-IR-NYRVVVNNGWEA--VQFSGHLHLHVLG 53 (62)
Q Consensus 2 ~l~~~~~~~~~~l~~~~~~~a~~---~~-~~-G~~i~~N~G~~a--GQ~V~H~H~Hiip 53 (62)
++.++++++..+|+..++++++. .+ ++ +||+++|.++.+ +|+|+|+|+||+|
T Consensus 243 ~l~dL~~~e~~~La~~l~~v~~~l~~~~~~~~~Yn~g~~~~p~~g~~q~v~HlHiHiiP 301 (348)
T 1gup_A 243 RITDLTDAQRSDLALALKKLTSRYDNLFQCSFPYSMGWHGAPFNGEENQHWQLHAHFYP 301 (348)
T ss_dssp SGGGCCHHHHHHHHHHHHHHHHHHHHHHTSCCCEEEEEECCCSSSSCCTTCCCEEEEEC
T ss_pred ChHHCCHHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCCCCCcccEEEEEEec
Confidence 46778899999999999999887 34 55 999999999875 4999999999999
No 25
>3sp4_A Aprataxin-like protein; HIT domain, zinc finger, DNA-binding protein, DNA deadenylas hydrolase; 1.80A {Schizosaccharomyces pombe} PDB: 3spd_A* 3spl_A* 3szq_A*
Probab=97.73 E-value=6.8e-06 Score=53.09 Aligned_cols=48 Identities=15% Similarity=0.204 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHH-H-HHHh-h--------cc--CceEEEEecCccCCcccceeeeeeeCCC
Q psy7292 8 IAILGHLMIVAK-K-VAAK-K--------LI--RNYRVVVNNGWEAVQFSGHLHLHVLGGR 55 (62)
Q Consensus 8 ~~~~~~l~~~~~-~-~a~~-~--------~~--~G~~i~~N~G~~aGQ~V~H~H~Hiip~~ 55 (62)
.+++.+|...++ + +++. + ++ .||+..+|.|..++|++.|+|+|||..+
T Consensus 66 ~~Ll~~m~~la~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~GfHa~PSm~HLHLHVIS~D 126 (204)
T 3sp4_A 66 RSLVEKLVSYVQGDLSGLIFDEARNCLSQQLTNEALCNYIKVGFHAGPSMNNLHLHIMTLD 126 (204)
T ss_dssp HHHHHHHHHHHHTTTHHHHHHHHHHHSCTTCCHHHHHTTEEEEEESSCSSSSCCEEEEESC
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCcCCeeeeEeccCCCCCcccceeEEEeccC
Confidence 456777777777 5 3332 1 32 4777788999999999999999999863
No 26
>1z84_A Galactose-1-phosphate uridyl transferase-like protein; GALT, zinc, AMP, structural genomics, protein structure initiative, CESG; HET: AMP; 1.83A {Arabidopsis thaliana} SCOP: d.13.1.2 d.13.1.2 PDB: 1zwj_A 2q4h_A* 2q4l_A 2h39_A*
Probab=97.19 E-value=0.00087 Score=45.56 Aligned_cols=52 Identities=23% Similarity=0.291 Sum_probs=44.5
Q ss_pred CCCcCCHHHHHHHHHHHHHHHHh--hc--cCceEEEEecCccCCcccceeeeeeeC
Q psy7292 2 KTKSLDIAILGHLMIVAKKVAAK--KL--IRNYRVVVNNGWEAVQFSGHLHLHVLG 53 (62)
Q Consensus 2 ~l~~~~~~~~~~l~~~~~~~a~~--~~--~~G~~i~~N~G~~aGQ~V~H~H~Hiip 53 (62)
++.+++.+.+.+++.+.++-.+. .. ...+++..|-|+.+|-+++|.|.+|+.
T Consensus 136 ~l~~ls~~e~~~vi~~~~~~~~~L~~~~~~~yv~iF~N~G~~aGaSl~HpH~QI~a 191 (351)
T 1z84_A 136 QLSDIDPVGIGDILIAYKKRINQIAQHDSINYIQVFKNQGASAGASMSHSHSQMMA 191 (351)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHTTCTTCCEEEEEEEESGGGTCCCSSCEEEEEE
T ss_pred CcHHCCHHHHHHHHHHHHHHHHHHhcccCCCEEEEEEEcCcccCCCCcCccceeEe
Confidence 46688999999999988887766 22 368999999999999999999999985
No 27
>3bl9_A Scavenger mRNA-decapping enzyme DCPS; ligand complex, cytoplasm, hydrolase, nonsense-mediated mRNA decay, nucleus, polymorphism, structural genomics; HET: DD2; 1.80A {Homo sapiens} SCOP: d.13.1.3 d.246.1.1 PDB: 3bl7_A* 3bla_A*
Probab=96.16 E-value=0.01 Score=40.15 Aligned_cols=49 Identities=14% Similarity=0.160 Sum_probs=38.2
Q ss_pred CCCcCCHHHHHHHHHHHHHHHHh--hc-cCceEEEEecCccCCcccceeeeeeeCC
Q psy7292 2 KTKSLDIAILGHLMIVAKKVAAK--KL-IRNYRVVVNNGWEAVQFSGHLHLHVLGG 54 (62)
Q Consensus 2 ~l~~~~~~~~~~l~~~~~~~a~~--~~-~~G~~i~~N~G~~aGQ~V~H~H~Hiip~ 54 (62)
+|....-+.+..|...+++++.. ++ .+-+++.+---+ ++.|+|+||+.-
T Consensus 196 dL~~~HlpLL~~M~~~~~~~i~~~y~~~~~~~rlgfHy~P----S~yHLHlHvis~ 247 (301)
T 3bl9_A 196 DLTPEHLPLLRNILHQGQEAILQRYRMKGDHLRVYLHYLP----SYYHLHVHFTAL 247 (301)
T ss_dssp GCCGGGHHHHHHHHHHHHHHHHHHHCCCGGGEEEEEESSC----SSSSCEEEEEET
T ss_pred HCCHhHHHHHHHHHHHHHHHHHHhcCCChHHeEEEecCCC----CcceEEEEEEec
Confidence 35556678899999999999987 45 467888876654 789999999953
No 28
>1vlr_A MRNA decapping enzyme; 16740816, structural genomics, JCSG, protein structure initiative, PSI, joint center for structural genomics; 1.83A {Mus musculus} SCOP: d.13.1.3 d.246.1.1 PDB: 1xmm_B* 1xml_B 1st0_B* 1st4_B*
Probab=95.94 E-value=0.015 Score=40.18 Aligned_cols=49 Identities=16% Similarity=0.146 Sum_probs=38.2
Q ss_pred CCCcCCHHHHHHHHHHHHHHHHh--hc-cCceEEEEecCccCCcccceeeeeeeCC
Q psy7292 2 KTKSLDIAILGHLMIVAKKVAAK--KL-IRNYRVVVNNGWEAVQFSGHLHLHVLGG 54 (62)
Q Consensus 2 ~l~~~~~~~~~~l~~~~~~~a~~--~~-~~G~~i~~N~G~~aGQ~V~H~H~Hiip~ 54 (62)
+|....-+.+..|...+++++.. ++ .+-+++.+---+ ++.|+|+|||.-
T Consensus 243 dL~~~HlpLL~~M~~~~~~ii~~~yg~~~~~lRlgfHy~P----S~yHLHlHvis~ 294 (350)
T 1vlr_A 243 DLTPEHLPLLRNILREGQEAILKRYQVTGDRLRVYLHYLP----SYYHLHVHFTAL 294 (350)
T ss_dssp GCCGGGHHHHHHHHHHHHHHHHHHHCCCGGGEEEEEESSC----SSSSCEEEEEET
T ss_pred HCCHhHHHHHHHHHHHHHHHHHHhcCCChHHeEEEecCCC----CcceEEEEEEec
Confidence 35556678899999999999987 45 467888886654 789999999953
No 29
>3vg8_G Hypothetical protein TTHB210; alpha and beta proteins (A+B), unknown function; 2.20A {Thermus thermophilus}
Probab=91.35 E-value=0.19 Score=29.72 Aligned_cols=24 Identities=8% Similarity=0.185 Sum_probs=20.6
Q ss_pred CceEEEEecCccCCcccceeeeeee
Q psy7292 28 RNYRVVVNNGWEAVQFSGHLHLHVL 52 (62)
Q Consensus 28 ~G~~i~~N~G~~aGQ~V~H~H~Hii 52 (62)
|..+|..|.| ..|=+++|+|||+.
T Consensus 77 DHVdi~~~~g-HpGve~PHyhI~l~ 100 (116)
T 3vg8_G 77 DHVNMIPSGP-HPGVSEPHYHIELV 100 (116)
T ss_dssp CEEEEEECCC-CTTCCSCEEEEEEE
T ss_pred ceEEEecCCC-CCCcccCceEEEEE
Confidence 7899999855 56999999999986
No 30
>1gup_A Galactose-1-phosphate uridylyltransferase; nucleotidyltransferase, galactose metabolism; HET: GDU; 1.80A {Escherichia coli} SCOP: d.13.1.2 d.13.1.2 PDB: 1guq_A* 1hxq_A* 1hxp_A*
Probab=87.88 E-value=1.5 Score=29.45 Aligned_cols=52 Identities=15% Similarity=0.061 Sum_probs=39.3
Q ss_pred CCCcCCHHHHHHHHHHHHHHHHh-h-ccCceEEEEecCccCCcccceeeeeeeC
Q psy7292 2 KTKSLDIAILGHLMIVAKKVAAK-K-LIRNYRVVVNNGWEAVQFSGHLHLHVLG 53 (62)
Q Consensus 2 ~l~~~~~~~~~~l~~~~~~~a~~-~-~~~G~~i~~N~G~~aGQ~V~H~H~Hiip 53 (62)
.+.+++.+.+..++.+.+.-.+. . --.=..+.-|-|+.+|-|..|-|.-|+.
T Consensus 118 ~l~~l~~~~~~~vi~~~~~r~~~l~~~~~yV~iF~N~G~~~G~Sl~HpH~Qi~a 171 (348)
T 1gup_A 118 TLPELSVAALTEIVKTWQEQTAELGKTYPWVQVFENKGAAMGCSNPHPGGQIWA 171 (348)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHHHHCSEEEEEEEESGGGTCSCCSSEEEEEE
T ss_pred ChhhCCHHHHHHHHHHHHHHHHHHhhcCCEEEEecccCCcCCcCCCCCceeEEe
Confidence 35677888888888777666554 2 0123567889999999999999999874
No 31
>2cs7_A Pneumococcal histidine triad A protein; PHTA, pneumococcal histidine triad protein, structural genomics, unknown function; 1.20A {Streptococcus pneumoniae} SCOP: d.9.2.1
Probab=50.86 E-value=4 Score=21.11 Aligned_cols=17 Identities=24% Similarity=0.262 Sum_probs=11.6
Q ss_pred cccce-eeeeeeCCCCCC
Q psy7292 42 QFSGH-LHLHVLGGRPLH 58 (62)
Q Consensus 42 Q~V~H-~H~Hiip~~~l~ 58 (62)
=.|+| =|+|.||..+|.
T Consensus 25 yvv~HGdH~HyIpk~~Ls 42 (55)
T 2cs7_A 25 YIVPHGDHYHYIPKNELS 42 (55)
T ss_dssp EEEEETTEEEEEEGGGSC
T ss_pred EEEecCCeEEEeEhHHCC
Confidence 34555 388889987664
No 32
>1r5t_A Cytidine deaminase; zinc dependent deaminase, RNA editing, apobec-1 related protein, hydrolase; 2.00A {Saccharomyces cerevisiae} SCOP: c.97.1.1
Probab=50.31 E-value=22 Score=20.95 Aligned_cols=26 Identities=23% Similarity=0.141 Sum_probs=19.3
Q ss_pred CCCCcCCHHHHHHHHHHHHHHHHhhc
Q psy7292 1 MKTKSLDIAILGHLMIVAKKVAAKKL 26 (62)
Q Consensus 1 ~~l~~~~~~~~~~l~~~~~~~a~~~~ 26 (62)
|++...++....+|+..|++.++..+
T Consensus 1 ~~~~~~~~~~~~~L~~~A~~a~~~ay 26 (142)
T 1r5t_A 1 MKVGGIEDRQLEALKRAALKACELSY 26 (142)
T ss_dssp -CCTTSCHHHHHHHHHHHHHHGGGCB
T ss_pred CcccccchhHHHHHHHHHHHHHHhcC
Confidence 46677777777889999988887633
No 33
>1omh_A TRWC protein; protein-DNA complex, bacterial conjugation, relaxase, DNA replication, transferase/DNA complex; HET: DNA; 1.95A {Escherichia coli} SCOP: d.89.1.5 PDB: 1osb_A* 1qx0_A* 1s6m_A* 1zm5_A* 2cdm_A
Probab=32.91 E-value=17 Score=24.06 Aligned_cols=9 Identities=33% Similarity=0.619 Sum_probs=7.6
Q ss_pred cceeeeeee
Q psy7292 44 SGHLHLHVL 52 (62)
Q Consensus 44 V~H~H~Hii 52 (62)
-||+|.|++
T Consensus 157 DP~lHtH~v 165 (293)
T 1omh_A 157 DPQLHTHAV 165 (293)
T ss_dssp CEEEEEEEE
T ss_pred CCCceeEEE
Confidence 599999965
No 34
>2z3g_A Blasticidin-S deaminase; hydrolase, cytidine deaminase family, zinc, tetramer; HET: TRE; 1.50A {Aspergillus terreus} SCOP: c.97.1.1 PDB: 1wn6_A* 1wn5_A* 2z3h_A* 2z3j_A 2z3i_A*
Probab=32.48 E-value=26 Score=20.30 Aligned_cols=21 Identities=19% Similarity=0.167 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHhhc-cCceEE
Q psy7292 12 GHLMIVAKKVAAKKL-IRNYRV 32 (62)
Q Consensus 12 ~~l~~~~~~~a~~~~-~~G~~i 32 (62)
.+|+..|++.++..+ +++|.+
T Consensus 8 ~~L~~~A~~a~~~ay~~s~f~V 29 (130)
T 2z3g_A 8 STLIERATATINSIPISEDYSV 29 (130)
T ss_dssp HHHHHHHHHHHHHSCCCSSSCE
T ss_pred HHHHHHHHHHHHhhCCCCCCCE
Confidence 467888888877633 344444
No 35
>2pof_A CDP-diacylglycerol pyrophosphatase; NYSGXRC, PFAM02611, PSI-2, phospholipid biosynthesis structural genomics, protein structure initiative; 1.40A {Escherichia coli} SCOP: d.13.1.4
Probab=31.55 E-value=34 Score=22.16 Aligned_cols=25 Identities=20% Similarity=0.428 Sum_probs=16.9
Q ss_pred cc-CceEEEEecCccCCcccceeeeeee
Q psy7292 26 LI-RNYRVVVNNGWEAVQFSGHLHLHVL 52 (62)
Q Consensus 26 ~~-~G~~i~~N~G~~aGQ~V~H~H~Hii 52 (62)
+| +-+-+.+|.- .|-+=.|+||||-
T Consensus 95 ipd~~lsLaINS~--~gRSQnQLHIHIs 120 (227)
T 2pof_A 95 VPDRAVSLAINSR--TGRTQNHFHIHIS 120 (227)
T ss_dssp CCGGGEEEEEBCG--GGCSCCSCCEEEE
T ss_pred CCccceEEEecCC--CCccccceeeehh
Confidence 45 4677777763 4666678888874
No 36
>3oj6_A Blasticidin-S deaminase; ssgcid, seattle structural genomics for infectious disease, hydrolase; 1.70A {Coccidioides immitis}
Probab=31.19 E-value=63 Score=19.53 Aligned_cols=23 Identities=26% Similarity=0.203 Sum_probs=15.1
Q ss_pred CCCCcCCHHHHHHHHHHHHHHHHh
Q psy7292 1 MKTKSLDIAILGHLMIVAKKVAAK 24 (62)
Q Consensus 1 ~~l~~~~~~~~~~l~~~~~~~a~~ 24 (62)
|.+.++++++ .+|+..|++..+.
T Consensus 22 ~~~~~L~~ed-~~Li~~A~~a~~~ 44 (158)
T 3oj6_A 22 MAPEPLSAAG-QNLIDTATSVING 44 (158)
T ss_dssp ---CBCCHHH-HHHHHHHHHHHHT
T ss_pred cccccCCHHH-HHHHHHHHHHHHh
Confidence 4566777764 7888888888664
No 37
>4g6v_B CDII; tRNAse, toxin, immunity; 2.64A {Burkholderia pseudomallei 1026A}
Probab=27.42 E-value=58 Score=18.70 Aligned_cols=39 Identities=13% Similarity=0.136 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHhhccCceEEEEecCccCCcccceeeee
Q psy7292 12 GHLMIVAKKVAAKKLIRNYRVVVNNGWEAVQFSGHLHLH 50 (62)
Q Consensus 12 ~~l~~~~~~~a~~~~~~G~~i~~N~G~~aGQ~V~H~H~H 50 (62)
++++..+.|+.-.++..|--++..+.++-.-+..|-|-|
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (111)
T 4g6v_B 72 ADLIPIVSKILVDGFNGGAILILQDNEYRRTSLEHHHHH 110 (111)
T ss_dssp GGGHHHHHHHHHHTTTTSCEEEEETTTEECSCC------
T ss_pred chhhhhhHHheecccCCceEEEEecchhhhhhhhhcccC
Confidence 455666677665567655556666666666667666644
No 38
>3l6t_A TRAI, mobilization protein TRAI; TRWC superfamily of relaxase enzymes, conjugative relaxase, relaxase, conjugal nickase, hydrolase; HET: CIT; 1.93A {Escherichia coli} SCOP: d.89.1.0 PDB: 3l57_A*
Probab=26.84 E-value=25 Score=23.41 Aligned_cols=10 Identities=30% Similarity=0.604 Sum_probs=8.2
Q ss_pred ccceeeeeee
Q psy7292 43 FSGHLHLHVL 52 (62)
Q Consensus 43 ~V~H~H~Hii 52 (62)
--||+|.|++
T Consensus 158 ~DP~LHtH~v 167 (302)
T 3l6t_A 158 LDPDLHTHAF 167 (302)
T ss_dssp SSCEEEEEEE
T ss_pred CCCCeeeEEE
Confidence 3699999976
No 39
>2q7t_A Protein TRAI, DNA helicase I; relaxase, hydrolase, conjugation; HET: TMP; 2.42A {Escherichia coli} PDB: 2q7u_A* 2a0i_A 1p4d_A
Probab=25.44 E-value=27 Score=23.20 Aligned_cols=9 Identities=33% Similarity=0.608 Sum_probs=7.7
Q ss_pred cceeeeeee
Q psy7292 44 SGHLHLHVL 52 (62)
Q Consensus 44 V~H~H~Hii 52 (62)
-||+|.|++
T Consensus 153 DP~LHtH~v 161 (301)
T 2q7t_A 153 EPQLHTHAV 161 (301)
T ss_dssp CEEEEEEEE
T ss_pred CCCceeeEE
Confidence 599999976
No 40
>3qbx_A Anhydro-N-acetylmuramic acid kinase; acetate and sugar kinases, HSP70, actin superfamily, anhydro-N-actetylmuramic acid binding; HET: AH0; 2.10A {Pseudomonas aeruginosa} PDB: 3qbw_A*
Probab=25.04 E-value=30 Score=23.82 Aligned_cols=7 Identities=29% Similarity=-0.111 Sum_probs=5.9
Q ss_pred Cccccee
Q psy7292 41 VQFSGHL 47 (62)
Q Consensus 41 GQ~V~H~ 47 (62)
||+|.|-
T Consensus 95 GQTv~H~ 101 (371)
T 3qbx_A 95 GQTIRHE 101 (371)
T ss_dssp CEEEEEE
T ss_pred CccCccC
Confidence 8999983
No 41
>4fai_A CG5976, isoform B; alpha/beta hydrolase, PGlu formation, PE, alzheimer'S diseas pyroglutamate, PGlu-amyloid, transferase, hydrolase; HET: PBD; 1.65A {Drosophila melanogaster} PDB: 4fbe_A*
Probab=24.67 E-value=1.5e+02 Score=19.23 Aligned_cols=36 Identities=14% Similarity=0.094 Sum_probs=26.6
Q ss_pred CHHHHHHHHHHHHHHHHh---hc-c-CceEEEEecCccCCc
Q psy7292 7 DIAILGHLMIVAKKVAAK---KL-I-RNYRVVVNNGWEAVQ 42 (62)
Q Consensus 7 ~~~~~~~l~~~~~~~a~~---~~-~-~G~~i~~N~G~~aGQ 42 (62)
+..=.+-|+++|+.+++. .. + .++.++..+||..|.
T Consensus 130 nasG~A~lLE~Ar~l~~~~~~~~~p~rtI~fv~fdgEE~Gl 170 (330)
T 4fai_A 130 SAVPCAMLLNLAQVLQEQLKPLKKSKLSLMLLFFDGEEAFE 170 (330)
T ss_dssp THHHHHHHHHHHHHTHHHHGGGGTSSEEEEEEEESCCSCSS
T ss_pred ccHhHHHHHHHHHHHHHhhhccCCCCccEEEEEeccccccc
Confidence 334467788888888765 23 4 589999999999884
No 42
>3cqy_A Anhydro-N-acetylmuramic acid kinase; APC7501, SO_1313, structural genomics, PSI-2, shewanella one MR-1, protein structure initiative; 2.30A {Shewanella oneidensis}
Probab=24.56 E-value=28 Score=23.88 Aligned_cols=6 Identities=33% Similarity=0.069 Sum_probs=5.5
Q ss_pred Ccccce
Q psy7292 41 VQFSGH 46 (62)
Q Consensus 41 GQ~V~H 46 (62)
||+|.|
T Consensus 99 GQTv~H 104 (370)
T 3cqy_A 99 GQTVRH 104 (370)
T ss_dssp EEEEEE
T ss_pred Cccccc
Confidence 899988
No 43
>4fuu_A Leucine aminopeptidase; phosphorylase/hydrolase like fold, peptidase family M28, STR genomics, joint center for structural genomics; 1.30A {Bacteroides thetaiotaomicron}
Probab=20.60 E-value=1.7e+02 Score=18.54 Aligned_cols=35 Identities=11% Similarity=0.103 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHhhccCceEEEEecCccCCc
Q psy7292 8 IAILGHLMIVAKKVAAKKLIRNYRVVVNNGWEAVQ 42 (62)
Q Consensus 8 ~~~~~~l~~~~~~~a~~~~~~G~~i~~N~G~~aGQ 42 (62)
..=.+-|+++++.+.+.....+++++..+|+..|.
T Consensus 129 aSG~a~lLE~ar~l~~~~~~~~i~~~~~~~EE~Gl 163 (309)
T 4fuu_A 129 ASGVGALLEIARLVNQQQPELGIDIIFLDAEDYGT 163 (309)
T ss_dssp HHHHHHHHHHHHHHHHSCCSSEEEEEEECSSSCCC
T ss_pred chhHHHHHHHHHHHhhcCCCCceEEEeecccccCc
Confidence 34467777778777653334689999999999773
No 44
>2fr5_A Cytidine deaminase; tetrahydrouridine, protein-inhibitor COM alternate conformation of Arg68, hydrolase; HET: TYU; 1.48A {Mus musculus} SCOP: c.97.1.1 PDB: 1zab_A* 2fr6_A* 1mq0_A*
Probab=20.27 E-value=75 Score=18.76 Aligned_cols=26 Identities=8% Similarity=0.220 Sum_probs=17.0
Q ss_pred CHHHHHHHHHHHHHHHHhhc-c-CceEE
Q psy7292 7 DIAILGHLMIVAKKVAAKKL-I-RNYRV 32 (62)
Q Consensus 7 ~~~~~~~l~~~~~~~a~~~~-~-~G~~i 32 (62)
+++...+|+..|++.++..+ | .+|.+
T Consensus 11 ~~~~~~~L~~~A~~a~~~ayapys~f~V 38 (146)
T 2fr5_A 11 EPEHVQRLLLSSREAKKSAYCPYSRFPV 38 (146)
T ss_dssp CCHHHHHHHHHHHHHHTTCBCTTTCCCE
T ss_pred CHHHHHHHHHHHHHHHHhcCCCcCCCCE
Confidence 34556788999988887644 3 45544
Done!