RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy7292
         (62 letters)



>gnl|CDD|238607 cd01276, PKCI_related, Protein Kinase C Interacting protein related
           (PKCI): PKCI and related proteins belong to the
           ubiquitous HIT family of hydrolases that act on
           alpha-phosphates of ribonucleotides. The members of this
           subgroup have a conserved HxHxHxx motif (x is a
           hydrophobic residue) that is a signature for this
           family. No enzymatic activity has been reported however,
           for PKCI and its related members.
          Length = 104

 Score = 56.0 bits (136), Expect = 2e-12
 Identities = 24/50 (48%), Positives = 30/50 (60%), Gaps = 2/50 (4%)

Query: 7   DIAILGHLMIVAKKVAAKKLIRN--YRVVVNNGWEAVQFSGHLHLHVLGG 54
           D  +LGHL+  A KVA    I    YR+V+N G +  Q   HLHLH+LGG
Sbjct: 55  DEELLGHLLSAAAKVAKDLGIAEDGYRLVINCGKDGGQEVFHLHLHLLGG 104


>gnl|CDD|216377 pfam01230, HIT, HIT domain. 
          Length = 97

 Score = 48.8 bits (117), Expect = 1e-09
 Identities = 25/56 (44%), Positives = 29/56 (51%), Gaps = 3/56 (5%)

Query: 5  SLDIAILGHLMIVAKKVAA---KKLIRNYRVVVNNGWEAVQFSGHLHLHVLGGRPL 57
           L    LG LM  AKKVA    K     YR+V+NNG  A Q   HLH+HV+  R  
Sbjct: 42 DLTPEELGDLMSEAKKVARALGKAKADGYRIVINNGAAAGQSVPHLHIHVIPRREG 97


>gnl|CDD|221348 pfam11969, DcpS_C, Scavenger mRNA decapping enzyme C-term binding. 
           This family consists of several scavenger mRNA decapping
           enzymes (DcpS) and is the C-terminal region. DcpS is a
           scavenger pyrophosphatase that hydrolyses the residual
           cap structure following 3' to 5' decay of an mRNA. The
           association of DcpS with 3' to 5' exonuclease exosome
           components suggests that these two activities are linked
           and there is a coupled exonucleolytic decay-dependent
           decapping pathway. The C-terminal domain contains a
           histidine triad (HIT) sequence with three histidines
           separated by hydrophobic residues. The central histidine
           within the DcpS HIT motif is critical for decapping
           activity and defines the HIT motif as a new mRNA
           decapping domain, making DcpS the first member of the
           HIT family of proteins with a defined biological
           function.
          Length = 113

 Score = 46.8 bits (112), Expect = 9e-09
 Identities = 19/47 (40%), Positives = 27/47 (57%)

Query: 7   DIAILGHLMIVAKKVAAKKLIRNYRVVVNNGWEAVQFSGHLHLHVLG 53
            + +LGH+  VAKK+A +K    YR V+  G+       HLHLHV+ 
Sbjct: 55  HLPLLGHMREVAKKIAKEKYNEGYRDVLRLGFHYGPSVYHLHLHVIA 101


>gnl|CDD|223611 COG0537, Hit, Diadenosine tetraphosphate (Ap4A) hydrolase and other
           HIT family hydrolases [Nucleotide transport and
           metabolism / Carbohydrate transport and metabolism /
           General function prediction only].
          Length = 138

 Score = 42.4 bits (100), Expect = 8e-07
 Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 6/62 (9%)

Query: 6   LDIAILGHLMIVAKKVAAKKLIRN-----YRVVVNNGWEAVQFSGHLHLHVLGGRPLHWP 60
           LD   L  L ++A+K+A K L        Y + +NNG  A Q   HLH+H++        
Sbjct: 52  LDPEELAELFLLAQKIA-KALKEAFGADGYNIGINNGKAAGQEVFHLHIHIIPRYKGDDN 110

Query: 61  PG 62
             
Sbjct: 111 FP 112


>gnl|CDD|182648 PRK10687, PRK10687, purine nucleoside phosphoramidase; Provisional.
          Length = 119

 Score = 41.4 bits (97), Expect = 2e-06
 Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 2/51 (3%)

Query: 9   AILGHLMIVAKKVAAKKLIRN--YRVVVNNGWEAVQFSGHLHLHVLGGRPL 57
             LG ++ VA K+A ++ I    YR+++N      Q   H+H+H+LGGRPL
Sbjct: 60  QALGRMITVAAKIAEQEGIAEDGYRLIMNTNRHGGQEVYHIHMHLLGGRPL 110


>gnl|CDD|238263 cd00468, HIT_like, HIT family: HIT (Histidine triad) proteins,
          named for a motif related to the sequence HxHxH/Qxx (x,
          a hydrophobic amino acid), are a superfamily of
          nucleotide hydrolases and transferases, which act on
          the alpha-phosphate of ribonucleotides. On the basis of
          sequence, substrate specificity, structure, evolution
          and mechanism, HIT proteins are classified in the
          literacture into three major branches: the Hint branch,
          which consists of adenosine 5' -monophosphoramide
          hydrolases, the Fhit branch, that consists of
          diadenosine polyphosphate hydrolases, and the GalT
          branch consisting of specific nucloside monophosphate
          transferases. Further sequence analysis reveals several
          new closely related, yet uncharacterized subgroups.
          Length = 86

 Score = 38.6 bits (90), Expect = 1e-05
 Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 4/52 (7%)

Query: 6  LDIAILGHLMIVAKKVAAK----KLIRNYRVVVNNGWEAVQFSGHLHLHVLG 53
          LD A+L  L+I A++VAA+      + +  V VN+G  A Q   H+HLHVL 
Sbjct: 35 LDEALLADLVITAQRVAAELEKHGNVPSLTVFVNDGAAAGQSVPHVHLHVLP 86


>gnl|CDD|238608 cd01277, HINT_subgroup, HINT (histidine triad nucleotide-binding
           protein) subgroup: Members of this CD belong to the
           superfamily of histidine triad hydrolases that act on
           alpha-phosphate of ribonucleotides. This subgroup
           includes members from all three forms of cellular life.
           Although the biochemical function has not been
           characterised for many of the members of this subgroup,
           the proteins from Yeast have been shown to be involved
           in secretion, peroxisome formation and gene expression.
          Length = 103

 Score = 37.2 bits (87), Expect = 5e-05
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 4/51 (7%)

Query: 6   LDIAILGHLMIVAKKVA----AKKLIRNYRVVVNNGWEAVQFSGHLHLHVL 52
           LD   L  L++ AKKVA             ++ NNG  A Q   H+H+HV+
Sbjct: 51  LDPEELAELILAAKKVARALKKALKADGLNILQNNGRAAGQVVFHVHVHVI 101


>gnl|CDD|238970 cd02012, TPP_TK, Thiamine pyrophosphate (TPP) family, Transketolase
           (TK) subfamily, TPP-binding module; TK catalyzes the
           transfer of a two-carbon unit from ketose phosphates to
           aldose phosphates. In heterotrophic organisms, TK
           provides a link between glycolysis and the pentose
           phosphate pathway and provides precursors for
           nucleotide, aromatic amino acid and vitamin
           biosynthesis. In addition, the enzyme plays a central
           role in the Calvin cycle in plants. Typically, TKs are
           homodimers. They require TPP and divalent cations, such
           as magnesium ions, for activity.
          Length = 255

 Score = 29.8 bits (68), Expect = 0.052
 Identities = 15/37 (40%), Positives = 17/37 (45%), Gaps = 9/37 (24%)

Query: 22  AAKKLIRNYRVVV-------NNG--WEAVQFSGHLHL 49
           A K L  +YRV V         G  WEA  F+GH  L
Sbjct: 120 AEKLLGFDYRVYVLLGDGELQEGSVWEAASFAGHYKL 156


>gnl|CDD|225798 COG3259, FrhA, Coenzyme F420-reducing hydrogenase, alpha subunit
           [Energy production and conversion].
          Length = 441

 Score = 25.1 bits (55), Expect = 2.7
 Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 1/37 (2%)

Query: 22  AAKKLIRNYRVVVNNGWEAVQFSGHLHLHVLGGRPLH 58
           A   +I  Y  +        +  G   + VLGG+ +H
Sbjct: 123 ADPGMIDEYPELAKEAIRLRKI-GQTIVEVLGGKAIH 158


>gnl|CDD|236499 PRK09404, sucA, 2-oxoglutarate dehydrogenase E1 component;
          Reviewed.
          Length = 924

 Score = 24.7 bits (55), Expect = 3.2
 Identities = 9/32 (28%), Positives = 11/32 (34%), Gaps = 11/32 (34%)

Query: 17 VAKKVAAKKLIRNYRVVVNNGWEAVQFSGHLH 48
             +V   +LI  YR           F GHL 
Sbjct: 77 SDPQVKVLQLINAYR-----------FRGHLA 97


>gnl|CDD|235793 PRK06394, rpl13p, 50S ribosomal protein L13P; Reviewed.
          Length = 146

 Score = 24.4 bits (54), Expect = 3.5
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 4/33 (12%)

Query: 9  AILGHLMIVAKKVAAKKLIRNYRVVVNNGWEAV 41
           ILG L   A  VA K+L+    VV+ N  +AV
Sbjct: 12 QILGRL---ASYVA-KRLLEGEEVVIVNAEKAV 40


>gnl|CDD|179843 PRK04390, rnpA, ribonuclease P; Reviewed.
          Length = 120

 Score = 24.3 bits (53), Expect = 4.6
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 4/31 (12%)

Query: 5  SLDIAILGHLMIVAKKVAAKKLIRNY--RVV 33
           LD   LG  ++V KK A + + RNY  RV+
Sbjct: 40 GLDHPRLG--LVVGKKTAKRAVERNYMKRVI 68


>gnl|CDD|184553 PRK14176, PRK14176, bifunctional 5,10-methylene-tetrahydrofolate
           dehydrogenase/ 5,10-methylene-tetrahydrofolate
           cyclohydrolase; Provisional.
          Length = 287

 Score = 24.0 bits (52), Expect = 6.5
 Identities = 12/28 (42%), Positives = 16/28 (57%)

Query: 7   DIAILGHLMIVAKKVAAKKLIRNYRVVV 34
           +  I+GH  +V K +AA  L RN  V V
Sbjct: 166 NAVIVGHSNVVGKPMAAMLLNRNATVSV 193


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.325    0.140    0.450 

Gapped
Lambda     K      H
   0.267   0.0783    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,195,198
Number of extensions: 229003
Number of successful extensions: 293
Number of sequences better than 10.0: 1
Number of HSP's gapped: 285
Number of HSP's successfully gapped: 15
Length of query: 62
Length of database: 10,937,602
Length adjustment: 33
Effective length of query: 29
Effective length of database: 9,473,920
Effective search space: 274743680
Effective search space used: 274743680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (24.1 bits)