RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7292
(62 letters)
>3o1c_A Histidine triad nucleotide-binding protein 1; hydrolase, HINT
protein, HIT protein, adenosine 5'- monophosphoramidase;
HET: ADN; 1.08A {Oryctolagus cuniculus} PDB: 3llj_A*
1rzy_A* 3qgz_A* 3o1z_A 3o1x_A* 4eqe_A* 4eqg_A* 4eqh_A*
3tw2_A* 1kpb_A 1kpf_A* 1kpa_A 1kpc_A 1av5_A* 1kpe_A*
4rhn_A* 3rhn_A* 5rhn_A* 6rhn_A
Length = 126
Score = 81.4 bits (202), Expect = 2e-22
Identities = 32/57 (56%), Positives = 41/57 (71%), Gaps = 1/57 (1%)
Query: 7 DIAILGHLMIVAKKVAAKKLIRN-YRVVVNNGWEAVQFSGHLHLHVLGGRPLHWPPG 62
D ++LGHLMIV KK AA ++ YR+VVN G + Q H+HLHVLGGR ++WPPG
Sbjct: 70 DESLLGHLMIVGKKCAADLGLKKGYRMVVNEGSDGGQSVYHVHLHVLGGRQMNWPPG 126
>3oj7_A Putative histidine triad family protein; hydrolase, structural
genomics, seattle structural genomics for infectious
disease, ssgcid; 1.40A {Entamoeba histolytica} PDB:
3omf_A* 3oxk_A*
Length = 117
Score = 78.3 bits (194), Expect = 3e-21
Identities = 19/55 (34%), Positives = 29/55 (52%)
Query: 7 DIAILGHLMIVAKKVAAKKLIRNYRVVVNNGWEAVQFSGHLHLHVLGGRPLHWPP 61
+ A +G ++ + K+ YRVV N G +A Q H+H H+LGG+ L W
Sbjct: 62 NEAFIGKVLYKVSLIGKKECPEGYRVVNNIGEDAGQTVKHIHFHILGGKKLAWDK 116
>4egu_A Histidine triad (HIT) protein; structural genomics, center for
structural genomics of infec diseases, csgid, HIT
domain, unknown function; HET: 5GP; 0.95A {Clostridium
difficile}
Length = 119
Score = 72.6 bits (179), Expect = 5e-19
Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 7 DIAILGHLMIVAKKVAAKKLIRN--YRVVVNNGWEAVQFSGHLHLHVLGGRPL-HWPPG 62
++ I+ H+ +V K+A +K +RV+ N G + Q HLH H+L G+ L ++ G
Sbjct: 59 EMDIVSHIHVVINKIAKEKGFDQTGFRVINNCGSDGGQEVKHLHYHILAGKKLPNYEAG 117
>3n1s_A HIT-like protein HINT; histidine triad nucleotide binding protein,
GMP, hydro; HET: 5GP; 1.45A {Escherichia coli} PDB:
3n1t_A*
Length = 119
Score = 65.2 bits (160), Expect = 4e-16
Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 7 DIAILGHLMIVAKKVAAKKLIRN--YRVVVNNGWEAVQFSGHLHLHVLGGRPL 57
LG ++ VA K+A ++ I YR+++N Q H+H+H+LGGRPL
Sbjct: 58 HEQALGRMITVAAKIAEQEGIAEDGYRLIMNTNRHGGQEVYHIHMHLLGGRPL 110
>3o0m_A HIT family protein; ssgcid, NIH, niaid, SBRI, UW, emerald
biostructures, hydrola structural genomics; HET: AMP;
1.90A {Mycobacterium smegmatis str}
Length = 149
Score = 63.9 bits (156), Expect = 3e-15
Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 5/61 (8%)
Query: 7 DIAILGHLMIVAKKVAAKKLIRN--YRVVVNNGWEAVQFSGHLHLHVLGGR---PLHWPP 61
+A + + + A + + + +N+G A Q H+HLHV+ R L +
Sbjct: 60 TVAGMAAVGQRIARAARESGLHADGNNIAINDGKAAFQTVFHIHLHVVPRRNGDKLSFAK 119
Query: 62 G 62
G
Sbjct: 120 G 120
>1xqu_A HIT family hydrolase; protein STRU initiative, PSI, southeast
collaboratory for structural GEN secsg; 2.30A
{Clostridium thermocellum} SCOP: d.13.1.1
Length = 147
Score = 63.9 bits (156), Expect = 3e-15
Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 7 DIAILGHLMIVAKKVAAKKLIRN--YRVVVNNGWEAVQFSGHLHLHVLGGRPL 57
+ IL + A KVA I YR++ N G A Q HLH H+LGG +
Sbjct: 90 NAQILIDIHKAANKVAEDLGIAEKGYRLITNCGVAAGQTVFHLHYHLLGGVDM 142
>3p0t_A Uncharacterized protein; ssgcid, HIT-like protein, mycobacerium
paratuberculosis, STR genomics; 1.90A {Mycobacterium
avium subsp}
Length = 138
Score = 60.4 bits (147), Expect = 6e-14
Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Query: 6 LDIAILGHLMIVAKKVAAKKLIRNYRVVVNNGWEAVQFSGHLHLHVLGGRPLHW 59
+D A +M V++ + K + + +R + A HLH+HV R L
Sbjct: 56 VDSAAFNRVMGVSQLIG-KAVCKAFRTERSGLIIAGLEVPHLHVHVFPTRSLSD 108
>3ksv_A Uncharacterized protein; HIT family, structural genomics,
structural genomics of PATH protozoa consortium, SGPP,
unknown function; 1.90A {Leishmania major}
Length = 149
Score = 58.5 bits (142), Expect = 3e-13
Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 7/62 (11%)
Query: 7 DIAILGHLMIVAKKVAAKKL-IRNYRVVVNNGWEAVQFSGHLHLHVL------GGRPLHW 59
D A +G L+ A + A Y V+ NNG A Q H+H H++ G + W
Sbjct: 66 DAADVGVLLAKASRAVAGPDGSMQYNVLQNNGSLAHQEVPHVHFHIIPKTDEKTGLKIGW 125
Query: 60 PP 61
Sbjct: 126 DT 127
>2eo4_A 150AA long hypothetical histidine triad nucleotid protein; HIT
family, structural genomics, NPPSFA; 1.80A {Sulfolobus
tokodaii}
Length = 149
Score = 54.3 bits (131), Expect = 2e-11
Identities = 12/57 (21%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Query: 7 DIAILGHLMIVAKKVAAKKLIRN-YRVVVNNGWEAVQFSGHLHLHVLGGRPLHWPPG 62
+A L ++ + + + R++ N G A Q HLH+H++ +P
Sbjct: 54 TLAELAKVVKLVSLGIKDAVKADGLRLLTNIGRSAGQVIFHLHVHIIPTWEGDYPDI 110
>3r6f_A HIT family protein; structural genomics, seattle structural
genomics center for infectious disease, ssgcid,
protozoan parasite; 1.85A {Encephalitozoon cuniculi}
Length = 135
Score = 53.9 bits (130), Expect = 2e-11
Identities = 12/63 (19%), Positives = 22/63 (34%), Gaps = 8/63 (12%)
Query: 6 LDIAILGHLMIVAKKVAAKKLIRNYRVVVNNGWEAVQFSGHLHLHVLGGR------PLHW 59
L ++ + + K Y ++ NNG Q H+H HV+ ++W
Sbjct: 55 YKPEELSGVLDTIRHLVQKFGFERYNILQNNG--NHQEVFHVHFHVIPFVSADERLMINW 112
Query: 60 PPG 62
Sbjct: 113 KAK 115
>3imi_A HIT family protein; structural genomics, infectious diseases for
structural genomics of infectious diseases, unknown FUN
csgid; 2.01A {Bacillus anthracis str}
Length = 147
Score = 52.7 bits (127), Expect = 6e-11
Identities = 18/66 (27%), Positives = 26/66 (39%), Gaps = 10/66 (15%)
Query: 6 LDIAILGHLMIVAKKVA--AKKLIRN--YRVVVNNGWEAVQFSGHLHLHVLG------GR 55
L I H+ V K+A K + ++ NNG +A Q H HLH++ G
Sbjct: 60 LTPEIASHIFSVVPKIANAIKAEFNPVGFNLLNNNGEKAGQTVFHFHLHLIPRYGENDGF 119
Query: 56 PLHWPP 61
W
Sbjct: 120 GAVWKS 125
>1y23_A HIT, histidine triad protein; HIT protein, PKCI-1, cell-cycle
regulation, NYSGXRC, structural genomics, protein
structure initiative; 2.30A {Bacillus subtilis} SCOP:
d.13.1.1
Length = 145
Score = 51.6 bits (124), Expect = 1e-10
Identities = 11/62 (17%), Positives = 19/62 (30%), Gaps = 7/62 (11%)
Query: 7 DIAILGHLMIVAKKVAAKKLIRN-YRVVVNNGWEAVQFSGHLHLHVL------GGRPLHW 59
H + + + + NNG +A Q H H+H++ G W
Sbjct: 60 LAKQYFHAVPKIARAIRDEFEPIGLNTLNNNGEKAGQSVFHYHMHIIPRYGKGDGFGAVW 119
Query: 60 PP 61
Sbjct: 120 KT 121
>3l7x_A SMU.412C, putative HIT-like protein involved in cell-cycle
regulation; 1.70A {Streptococcus mutans}
Length = 173
Score = 49.8 bits (119), Expect = 1e-09
Identities = 8/59 (13%), Positives = 20/59 (33%), Gaps = 6/59 (10%)
Query: 9 AILGHLMIVAKKVAAKKLIRNYRVVVNNGWEAVQFSGHLHLHVL------GGRPLHWPP 61
+ + +A+ + ++ NN A Q H H+H++ + +
Sbjct: 94 NLFARIPKIARALQKATKADGLNIINNNEETAGQTVFHAHVHLVPRFADSDEFDIRFVQ 152
>3lb5_A HIT-like protein involved in cell-cycle regulatio; niaid, seattle
structural genomics center for infectious DIS ssgcid,
histidine triad; 1.90A {Bartonella henselae}
Length = 161
Score = 47.0 bits (112), Expect = 1e-08
Identities = 14/63 (22%), Positives = 23/63 (36%), Gaps = 7/63 (11%)
Query: 6 LDIAILGHLMIVAKKVA--AKKLIRN--YRVVVNNGWEAVQFSGHLHLHVLGGR---PLH 58
D L ++ +K+A KK + V+ N + Q HLH H++ L
Sbjct: 79 ADTETLFPVIKAVQKIAKAVKKAFQADGITVMQFNEAASQQTVYHLHFHIIPRMEGIELT 138
Query: 59 WPP 61
Sbjct: 139 PHN 141
>3sp4_A Aprataxin-like protein; HIT domain, zinc finger, DNA-binding
protein, DNA deadenylas hydrolase; 1.80A
{Schizosaccharomyces pombe} PDB: 3spd_A* 3spl_A* 3szq_A*
Length = 204
Score = 38.5 bits (89), Expect = 2e-05
Identities = 7/61 (11%), Positives = 19/61 (31%), Gaps = 13/61 (21%)
Query: 7 DIAILGHLMIVAKKVAAKKLI-------------RNYRVVVNNGWEAVQFSGHLHLHVLG 53
+++ L+ + + + + G+ A +LHLH++
Sbjct: 65 HRSLVEKLVSYVQGDLSGLIFDEARNCLSQQLTNEALCNYIKVGFHAGPSMNNLHLHIMT 124
Query: 54 G 54
Sbjct: 125 L 125
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 29.6 bits (66), Expect = 0.039
Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 17/64 (26%)
Query: 7 DI-AILGHLMIVAKK--VAAKKLIRNY---RVVVNNG---------WEAVQFSGHLHLHV 51
DI A+ L+ V K+LI+NY R++ + AV G+ L
Sbjct: 100 DIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVG-EGNAQLVA 158
Query: 52 L-GG 54
+ GG
Sbjct: 159 IFGG 162
Score = 25.4 bits (55), Expect = 1.3
Identities = 12/66 (18%), Positives = 22/66 (33%), Gaps = 14/66 (21%)
Query: 2 KTKSLDIAIL----GHLMIVAKKVAAKKLIR-NYRVVVNNGWEAVQFSGHLHLHVLGGRP 56
K + I + G + V +++++ R+ V WE H+ G
Sbjct: 451 NAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVK--WETTTQFKATHILDFG--- 505
Query: 57 LHWPPG 62
PG
Sbjct: 506 ----PG 507
>1fit_A FragIle histidine protein; FHIT, fragIle histidine triad protein,
putative human tumor suppressor, advanced photon source,
APS; HET: FRU; 1.85A {Homo sapiens} SCOP: d.13.1.1 PDB:
1fhi_A* 2fit_A* 3fit_A* 4fit_A 5fit_A* 6fit_A* 2fhi_A*
Length = 147
Score = 28.1 bits (63), Expect = 0.11
Identities = 12/52 (23%), Positives = 23/52 (44%), Gaps = 6/52 (11%)
Query: 6 LDIAILGHLMIVAKKVAAKKLIRNYR-----VVVNNGWEAVQFSGHLHLHVL 52
L + L ++V + +++ + +G EA Q H+H+HVL
Sbjct: 50 LRPDEVADLFQTTQRVG-TVVEKHFHGTSLTFSMQDGPEAGQTVKHVHVHVL 100
>1ems_A Nitfhit, NIT-fragIle histidine triad fusion protein; WORM,
nitrilase, nucleotide-binding protein, cancer; 2.80A
{Caenorhabditis elegans} SCOP: d.13.1.1 d.160.1.1
Length = 440
Score = 26.6 bits (59), Expect = 0.43
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 6/56 (10%)
Query: 6 LDIAILGHLMIVAKKVAAKKLIRNYR-----VVVNNGWEAVQFSGHLHLHVLGGRP 56
L A L IVAKKV L +++ + V +G +A Q H+H+H+L R
Sbjct: 346 LTDAETADLFIVAKKVQ-AMLEKHHNVTSTTICVQDGKDAGQTVPHVHIHILPRRA 400
>3ano_A AP-4-A phosphorylase; diadenosine polyphosphate, HIT transferase;
HET: PG4; 1.89A {Mycobacterium tuberculosis}
Length = 218
Score = 26.5 bits (58), Expect = 0.49
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 9/54 (16%)
Query: 6 LDIAILGHLMIVAKKVAAKKLIRN------YRVVVNNGWEAVQ-FSGHLHLHVL 52
L LM +K ++I+N + V +N G A + HLH+HV+
Sbjct: 121 LTDLESAELMAFTQKA--IRVIKNVSRPHGFNVGLNLGTSAGGSLAEHLHVHVV 172
>2qhq_A Unknown function protein VPA0580; structura genomics, PSI-2,
protein structure initiative, midwest CENT structural
genomics, MCSG; HET: MSE MLY; 1.76A {Vibrio
parahaemolyticus} PDB: 2qm2_A*
Length = 125
Score = 26.1 bits (57), Expect = 0.49
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 28 RNYRVVVNNGWEAVQFSG 45
+N R + GWE +QF
Sbjct: 102 QNIRNFMVTGWEGIQFET 119
>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis
sugar metaboli transferase; HET: TPP; 1.75A {Homo
sapiens} PDB: 3ooy_A*
Length = 616
Score = 24.8 bits (55), Expect = 2.1
Identities = 10/38 (26%), Positives = 13/38 (34%), Gaps = 10/38 (26%)
Query: 22 AAKKL-IRNYRVVVNNG---------WEAVQFSGHLHL 49
K +YRV G WEA+ F+ L
Sbjct: 136 TGKYFDKASYRVYCLLGDGELSEGSVWEAMAFASIYKL 173
>2yic_A 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.96A
{Mycobacterium smegmatis} PDB: 2xta_A* 2y0p_A* 2xt9_A*
2yid_A*
Length = 868
Score = 24.1 bits (53), Expect = 3.3
Identities = 6/17 (35%), Positives = 7/17 (41%)
Query: 16 IVAKKVAAKKLIRNYRV 32
I K +LI YR
Sbjct: 4 IEDKNARVIELIAAYRN 20
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Length = 96
Score = 23.8 bits (51), Expect = 3.9
Identities = 6/27 (22%), Positives = 13/27 (48%)
Query: 32 VVVNNGWEAVQFSGHLHLHVLGGRPLH 58
V + N +A+ LH + +G + +
Sbjct: 57 VQMENLQDAIGAVNSLHRYKIGSKKIL 83
>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A
{Mycobacterium smegmatis}
Length = 1113
Score = 23.7 bits (52), Expect = 4.8
Identities = 9/33 (27%), Positives = 10/33 (30%), Gaps = 11/33 (33%)
Query: 16 IVAKKVAAKKLIRNYRVVVNNGWEAVQFSGHLH 48
I K +LI YR GHL
Sbjct: 249 IEDKNARVIELIAAYRNR-----------GHLM 270
>2jgd_A 2-oxoglutarate dehydrogenase E1 component; flavoprotein,
oxidoreductase, thiamine diphosphate, thiamine
pyrophosphate, adenosine monophosphate; HET: AMP; 2.6A
{Escherichia coli} PDB: 2jgd_B*
Length = 933
Score = 22.9 bits (50), Expect = 8.0
Identities = 6/18 (33%), Positives = 8/18 (44%)
Query: 15 MIVAKKVAAKKLIRNYRV 32
K+V +LI YR
Sbjct: 84 DTNVKQVKVLQLINAYRF 101
>3h49_A Ribokinase; transferase,PFKB family,sugar kinase YDJH,
NYSGXRC,11206A,PSI2,, structural genomics, protein
structure initiative; 1.80A {Escherichia coli k-12}
PDB: 3in1_A*
Length = 325
Score = 22.9 bits (50), Expect = 8.5
Identities = 4/16 (25%), Positives = 9/16 (56%)
Query: 1 MKTKSLDIAILGHLMI 16
M +LD+ +G ++
Sbjct: 1 MSLDNLDVICIGAAIV 16
>3i4s_A Histidine triad protein; hydrolase, phosphatase, HIT superfamily,
PSI-2, NYSGXRC, STR genomics, protein structure
initiative; 1.75A {Bradyrhizobium japonicum}
Length = 149
Score = 23.1 bits (49), Expect = 8.6
Identities = 10/46 (21%), Positives = 16/46 (34%), Gaps = 1/46 (2%)
Query: 6 LDIAILGHLMIVAKKVAAKKLIRNYRVVVNNGWEAVQFSGHLHLHV 51
LD LM +V+ + L + N LH+H+
Sbjct: 55 LDEVQQAQLMTEISRVS-RALKEITKCDKLNIAALGNLVPQLHVHI 99
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.140 0.450
Gapped
Lambda K H
0.267 0.0824 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,049,324
Number of extensions: 50774
Number of successful extensions: 209
Number of sequences better than 10.0: 1
Number of HSP's gapped: 192
Number of HSP's successfully gapped: 31
Length of query: 62
Length of database: 6,701,793
Length adjustment: 33
Effective length of query: 29
Effective length of database: 5,780,400
Effective search space: 167631600
Effective search space used: 167631600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (23.2 bits)