RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7292
         (62 letters)



>d1kpfa_ d.13.1.1 (A:) Protein kinase C inhibitor-1, PKCI-1 {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 111

 Score = 56.6 bits (136), Expect = 3e-13
 Identities = 32/55 (58%), Positives = 39/55 (70%), Gaps = 1/55 (1%)

Query: 9   AILGHLMIVAKKVAAKKLIRN-YRVVVNNGWEAVQFSGHLHLHVLGGRPLHWPPG 62
           ++LGHLMIV KK AA   +   YR+VVN G +  Q   H+HLHVLGGR +HWPPG
Sbjct: 57  SLLGHLMIVGKKCAADLGLNKGYRMVVNEGSDGGQSVYHVHLHVLGGRQMHWPPG 111


>d1xqua_ d.13.1.1 (A:) Putative hydrolase {Clostridium thermocellum
           [TaxId: 1515]}
          Length = 113

 Score = 34.8 bits (79), Expect = 1e-04
 Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 2/53 (3%)

Query: 7   DIAILGHLMIVAKKVAAKKLIRN--YRVVVNNGWEAVQFSGHLHLHVLGGRPL 57
           +  IL  +   A KVA    I    YR++ N G  A Q   HLH H+LGG  +
Sbjct: 57  NAQILIDIHKAANKVAEDLGIAEKGYRLITNCGVAAGQTVFHLHYHLLGGVDM 109


>d1vlra1 d.13.1.3 (A:146-337) mRNA decapping enzyme DcpS C-terminal
           domain {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 192

 Score = 30.9 bits (70), Expect = 0.005
 Identities = 8/49 (16%), Positives = 20/49 (40%), Gaps = 7/49 (14%)

Query: 7   DIAILGHLMIVAKKVAAKKL---IRNYRVVVNNGWEAVQFSGHLHLHVL 52
            + +L +++   ++   K+        RV ++     +    HLH+H  
Sbjct: 91  HLPLLRNILREGQEAILKRYQVTGDRLRVYLH----YLPSYYHLHVHFT 135


>d1y23a_ d.13.1.1 (A:) Hit {Bacillus subtilis [TaxId: 1423]}
          Length = 139

 Score = 29.5 bits (65), Expect = 0.013
 Identities = 8/23 (34%), Positives = 13/23 (56%)

Query: 30  YRVVVNNGWEAVQFSGHLHLHVL 52
              + NNG +A Q   H H+H++
Sbjct: 80  LNTLNNNGEKAGQSVFHYHMHII 102


>d1fita_ d.13.1.1 (A:) FHIT (fragile histidine triad protein)
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 146

 Score = 28.6 bits (63), Expect = 0.026
 Identities = 9/24 (37%), Positives = 14/24 (58%)

Query: 29 NYRVVVNNGWEAVQFSGHLHLHVL 52
          +    + +G EA Q   H+H+HVL
Sbjct: 76 SLTFSMQDGPEAGQTVKHVHVHVL 99


>d1emsa1 d.13.1.1 (A:281-440) NIT-FHIT fusion protein, C-terminal
           domain {Nematode (Caenorhabditis elegans) [TaxId: 6239]}
          Length = 160

 Score = 27.5 bits (60), Expect = 0.068
 Identities = 10/47 (21%), Positives = 20/47 (42%)

Query: 9   AILGHLMIVAKKVAAKKLIRNYRVVVNNGWEAVQFSGHLHLHVLGGR 55
            +      V   +     + +  + V +G +A Q   H+H+H+L  R
Sbjct: 73  DLFIVAKKVQAMLEKHHNVTSTTICVQDGKDAGQTVPHVHIHILPRR 119


>d3elga1 d.98.2.1 (A:20-146) Putative periplasmic protein BVU2443
           {Bacteroides vulgatus [TaxId: 821]}
          Length = 127

 Score = 22.8 bits (49), Expect = 3.1
 Identities = 6/22 (27%), Positives = 11/22 (50%)

Query: 18  AKKVAAKKLIRNYRVVVNNGWE 39
            K V  ++  + Y + + NG E
Sbjct: 92  HKTVKIERNRKGYELTLENGLE 113


>d1s58a_ b.121.5.2 (A:) Parvovirus (panleukopenia virus) capsid
           protein {Human parvovirus B19 [TaxId: 10798]}
          Length = 536

 Score = 22.9 bits (49), Expect = 3.1
 Identities = 7/20 (35%), Positives = 7/20 (35%), Gaps = 2/20 (10%)

Query: 45  GHLH--LHVLGGRPLHWPPG 62
                    LGG  LH PP 
Sbjct: 417 DSFKTQFAALGGWGLHQPPP 436


>d2fbla1 d.63.1.2 (A:2-151) Hypothetical protein NE1496
           {Nitrosomonas europaea [TaxId: 915]}
          Length = 150

 Score = 23.1 bits (49), Expect = 3.2
 Identities = 7/36 (19%), Positives = 14/36 (38%)

Query: 13  HLMIVAKKVAAKKLIRNYRVVVNNGWEAVQFSGHLH 48
            L    +    +K   + ++     +E   F+GHL 
Sbjct: 71  MLWPATEGRRVEKTRYSGKLPDGQLFELDVFAGHLS 106


>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat
          (Rattus rattus) [TaxId: 10117]}
          Length = 136

 Score = 21.8 bits (45), Expect = 7.7
 Identities = 5/17 (29%), Positives = 8/17 (47%)

Query: 41 VQFSGHLHLHVLGGRPL 57
          V F+G L + +     L
Sbjct: 2  VVFNGLLKIKICEAVSL 18


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.140    0.450 

Gapped
Lambda     K      H
   0.267   0.0639    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 250,807
Number of extensions: 8969
Number of successful extensions: 51
Number of sequences better than 10.0: 1
Number of HSP's gapped: 51
Number of HSP's successfully gapped: 13
Length of query: 62
Length of database: 2,407,596
Length adjustment: 32
Effective length of query: 30
Effective length of database: 1,968,236
Effective search space: 59047080
Effective search space used: 59047080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.1 bits)