Query psy7294
Match_columns 123
No_of_seqs 125 out of 1005
Neff 6.5
Searched_HMMs 46136
Date Fri Aug 16 23:01:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7294.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7294hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd03757 proteasome_beta_type_1 99.9 3.1E-26 6.6E-31 173.9 12.1 115 4-119 86-212 (212)
2 cd03761 proteasome_beta_type_5 99.9 5.2E-26 1.1E-30 169.6 12.1 107 4-112 78-187 (188)
3 cd03759 proteasome_beta_type_3 99.9 9.3E-26 2E-30 169.1 12.1 108 5-113 82-193 (195)
4 cd03760 proteasome_beta_type_4 99.9 4.3E-25 9.2E-30 165.6 12.0 108 4-112 81-195 (197)
5 cd03758 proteasome_beta_type_2 99.9 4.7E-25 1E-29 165.2 12.1 108 5-113 80-192 (193)
6 PTZ00488 Proteasome subunit be 99.9 4E-25 8.6E-30 172.1 11.4 110 4-115 117-229 (247)
7 cd03764 proteasome_beta_archea 99.9 7.6E-25 1.6E-29 162.7 12.3 108 4-113 78-188 (188)
8 KOG0177|consensus 99.9 3.2E-25 7E-30 165.6 8.1 89 25-114 105-193 (200)
9 TIGR03634 arc_protsome_B prote 99.9 1.4E-24 3E-29 160.8 10.9 105 3-109 78-185 (185)
10 cd03762 proteasome_beta_type_6 99.9 2.8E-24 6.1E-29 159.7 11.9 107 3-111 77-186 (188)
11 cd03763 proteasome_beta_type_7 99.9 3.5E-24 7.6E-29 159.6 12.3 106 5-113 79-187 (189)
12 KOG0179|consensus 99.9 2.6E-24 5.6E-29 163.2 9.9 114 5-119 108-235 (235)
13 cd03765 proteasome_beta_bacter 99.9 6.1E-24 1.3E-28 164.8 11.2 115 4-120 82-214 (236)
14 COG0638 PRE1 20S proteasome, a 99.9 1.5E-23 3.2E-28 162.2 11.5 110 4-115 108-223 (236)
15 cd01912 proteasome_beta protea 99.9 3.6E-23 7.8E-28 153.1 12.3 107 5-112 79-188 (189)
16 cd03750 proteasome_alpha_type_ 99.9 5.4E-22 1.2E-26 151.9 11.3 105 6-113 106-218 (227)
17 TIGR03690 20S_bact_beta protea 99.9 7.2E-22 1.6E-26 150.7 11.5 110 5-114 81-204 (219)
18 TIGR03633 arc_protsome_A prote 99.9 1.6E-21 3.5E-26 148.7 11.4 106 5-113 107-221 (224)
19 KOG0175|consensus 99.9 6.9E-22 1.5E-26 153.6 6.8 107 5-113 150-259 (285)
20 PTZ00246 proteasome subunit al 99.9 5.8E-21 1.2E-25 148.4 11.7 91 17-108 126-219 (253)
21 TIGR03691 20S_bact_alpha prote 99.8 8.8E-21 1.9E-25 146.2 10.4 98 17-114 114-221 (228)
22 cd01906 proteasome_protease_Hs 99.8 9.5E-21 2.1E-25 138.7 9.8 101 3-104 77-182 (182)
23 PF00227 Proteasome: Proteasom 99.8 1.4E-20 3.1E-25 138.5 10.6 98 6-104 89-190 (190)
24 PRK03996 proteasome subunit al 99.8 2.3E-20 4.9E-25 143.9 11.0 105 6-113 115-228 (241)
25 cd03755 proteasome_alpha_type_ 99.8 1.7E-20 3.6E-25 141.8 10.0 96 5-104 105-207 (207)
26 cd03752 proteasome_alpha_type_ 99.8 2.8E-20 6.1E-25 141.1 10.5 98 6-104 109-213 (213)
27 cd03756 proteasome_alpha_arche 99.8 2.8E-20 6.1E-25 140.8 10.4 97 6-105 107-210 (211)
28 cd01911 proteasome_alpha prote 99.8 2.5E-20 5.4E-25 140.7 10.0 98 5-104 105-209 (209)
29 cd03749 proteasome_alpha_type_ 99.8 1.5E-19 3.2E-24 137.2 10.5 98 6-105 104-211 (211)
30 cd03754 proteasome_alpha_type_ 99.8 1.2E-19 2.6E-24 138.2 10.0 98 5-104 107-215 (215)
31 cd03751 proteasome_alpha_type_ 99.8 1.4E-19 3E-24 137.8 10.2 97 6-104 109-212 (212)
32 cd03753 proteasome_alpha_type_ 99.8 1.7E-19 3.7E-24 136.7 9.9 96 6-104 106-213 (213)
33 KOG0174|consensus 99.8 8.6E-20 1.9E-24 137.4 7.2 107 4-112 97-206 (224)
34 KOG0173|consensus 99.8 2.1E-18 4.7E-23 133.8 9.9 106 8-115 119-226 (271)
35 PRK05456 ATP-dependent proteas 99.7 2.3E-17 5.1E-22 122.7 8.9 67 34-103 102-171 (172)
36 KOG0185|consensus 99.7 2.3E-17 4.9E-22 127.1 7.3 107 6-113 122-236 (256)
37 KOG0176|consensus 99.7 1E-16 2.3E-21 121.3 8.2 85 26-113 145-230 (241)
38 cd01913 protease_HslV Protease 99.6 1E-15 2.2E-20 113.9 8.8 89 9-103 78-170 (171)
39 TIGR03692 ATP_dep_HslV ATP-dep 99.6 2.8E-15 6.1E-20 111.6 8.2 68 33-103 100-170 (171)
40 KOG0181|consensus 99.5 2.4E-14 5.2E-19 108.2 7.2 86 26-114 138-223 (233)
41 KOG0183|consensus 99.5 5.6E-14 1.2E-18 107.5 7.5 94 17-114 126-223 (249)
42 KOG0180|consensus 99.5 4.2E-13 9.1E-18 99.9 8.8 105 6-111 88-196 (204)
43 KOG0178|consensus 99.4 1.6E-12 3.4E-17 99.4 7.8 92 26-118 138-230 (249)
44 KOG0182|consensus 99.2 6.1E-11 1.3E-15 90.8 8.5 86 26-113 142-231 (246)
45 cd01901 Ntn_hydrolase The Ntn 99.2 1E-10 2.2E-15 82.0 8.0 79 6-86 80-163 (164)
46 KOG0863|consensus 98.8 1.4E-08 3E-13 78.8 7.7 86 25-112 135-224 (264)
47 KOG0184|consensus 98.4 6.4E-07 1.4E-11 69.3 5.7 77 26-106 140-218 (254)
48 KOG3361|consensus 95.1 0.052 1.1E-06 39.4 4.9 43 38-80 72-114 (157)
49 PF09894 DUF2121: Uncharacteri 94.7 0.2 4.3E-06 38.2 7.3 70 38-107 102-180 (194)
50 COG5405 HslV ATP-dependent pro 93.0 0.31 6.8E-06 36.4 5.5 69 34-105 105-176 (178)
51 COG3484 Predicted proteasome-t 92.3 0.24 5.2E-06 38.4 4.2 77 33-110 124-204 (255)
52 COG4079 Uncharacterized protei 84.7 3.7 8E-05 32.8 6.1 51 57-107 131-181 (293)
53 COG3193 GlcG Uncharacterized p 82.1 4.5 9.7E-05 29.4 5.3 37 69-109 5-41 (141)
54 PRK09732 hypothetical protein; 81.4 4.9 0.00011 28.7 5.3 38 70-111 5-42 (134)
55 PF03928 DUF336: Domain of unk 81.0 3.1 6.8E-05 29.0 4.1 39 70-112 1-39 (132)
56 KOG1930|consensus 64.5 4.4 9.4E-05 34.6 1.8 17 67-83 214-230 (483)
57 PF08269 Cache_2: Cache domain 63.4 22 0.00047 22.9 4.7 40 69-113 32-71 (95)
58 PRK02487 hypothetical protein; 61.6 35 0.00076 24.8 6.0 38 69-111 20-57 (163)
59 PF05117 DUF695: Family of unk 56.1 38 0.00082 23.5 5.2 46 71-119 51-99 (136)
60 PF01250 Ribosomal_S6: Ribosom 55.9 35 0.00076 22.0 4.7 45 69-119 10-54 (92)
61 COG0822 IscU NifU homolog invo 55.2 40 0.00087 24.4 5.3 55 35-90 44-99 (150)
62 PRK11325 scaffold protein; Pro 53.9 49 0.0011 23.1 5.4 54 35-88 42-96 (127)
63 PF04485 NblA: Phycobilisome d 53.4 20 0.00043 21.8 2.9 23 70-92 20-42 (53)
64 PF01713 Smr: Smr domain; Int 53.0 31 0.00068 21.7 4.0 33 71-108 5-37 (83)
65 smart00463 SMR Small MutS-rela 50.7 39 0.00086 21.1 4.2 36 71-110 8-43 (80)
66 COG1754 Uncharacterized C-term 49.2 17 0.00037 29.5 2.7 56 24-82 77-134 (298)
67 PF14748 P5CR_dimer: Pyrroline 45.2 28 0.00062 23.5 3.0 38 53-90 13-54 (107)
68 TIGR01999 iscU FeS cluster ass 43.3 92 0.002 21.5 5.5 54 35-88 40-94 (124)
69 PF00610 DEP: Domain found in 41.6 66 0.0014 19.6 4.1 32 55-86 19-50 (74)
70 PF01592 NifU_N: NifU-like N t 40.6 87 0.0019 21.6 5.0 53 38-90 43-96 (126)
71 PF11216 DUF3012: Protein of u 40.3 56 0.0012 17.9 3.1 22 64-85 10-31 (32)
72 PRK14065 exodeoxyribonuclease 40.0 73 0.0016 21.3 4.2 33 57-89 31-63 (86)
73 PRK00453 rpsF 30S ribosomal pr 39.9 87 0.0019 21.0 4.8 44 69-118 11-54 (108)
74 PF02609 Exonuc_VII_S: Exonucl 39.9 58 0.0013 19.2 3.5 29 62-90 10-38 (53)
75 cd04513 Glycosylasparaginase G 38.7 1.3E+02 0.0027 24.0 6.2 60 50-112 187-250 (263)
76 cd06664 IscU_like Iron-sulfur 38.1 1.2E+02 0.0026 20.5 5.4 54 35-89 38-92 (123)
77 TIGR02000 NifU_proper Fe-S clu 38.1 1.1E+02 0.0025 24.4 5.9 54 34-87 39-94 (290)
78 COG4245 TerY Uncharacterized p 37.2 66 0.0014 24.8 4.1 48 75-122 21-69 (207)
79 PF14593 PH_3: PH domain; PDB: 36.8 31 0.00067 23.6 2.1 17 32-48 36-52 (104)
80 cd04448 DEP_PIKfyve DEP (Dishe 36.3 72 0.0016 20.6 3.8 31 55-87 30-60 (81)
81 PF00538 Linker_histone: linke 35.3 84 0.0018 19.7 3.9 39 53-91 20-58 (77)
82 PF11773 PulG: Type II secreto 35.1 64 0.0014 21.4 3.3 39 71-111 33-72 (82)
83 cd04702 ASRGL1_like ASRGL1_lik 35.1 2.3E+02 0.0051 22.6 7.3 56 50-111 179-238 (261)
84 PF07499 RuvA_C: RuvA, C-termi 34.7 44 0.00094 19.2 2.3 30 53-82 13-43 (47)
85 TIGR01280 xseB exodeoxyribonuc 33.9 98 0.0021 19.3 4.0 29 61-89 11-39 (67)
86 COG1891 Uncharacterized protei 33.7 73 0.0016 24.5 3.9 29 71-102 91-119 (235)
87 PF03681 UPF0150: Uncharacteri 33.1 49 0.0011 18.7 2.3 19 71-89 28-46 (48)
88 PRK12412 pyridoxal kinase; Rev 32.5 70 0.0015 24.7 3.8 38 53-91 209-246 (268)
89 COG3140 Uncharacterized protei 32.4 57 0.0012 20.2 2.6 25 69-93 25-49 (60)
90 cd00249 AGE AGE domain; N-acyl 32.4 1.1E+02 0.0023 24.4 5.0 88 16-108 17-105 (384)
91 PRK12413 phosphomethylpyrimidi 32.3 73 0.0016 24.0 3.8 39 52-91 204-242 (253)
92 PHA01082 putative transcriptio 31.9 56 0.0012 23.4 2.8 26 67-92 26-51 (133)
93 COG2840 Uncharacterized protei 31.7 2.1E+02 0.0045 21.7 6.1 58 47-109 72-136 (184)
94 TIGR00112 proC pyrroline-5-car 31.6 79 0.0017 24.2 3.9 39 51-89 150-192 (245)
95 PRK14067 exodeoxyribonuclease 31.2 1.1E+02 0.0023 20.0 3.9 29 61-89 17-45 (80)
96 PF05924 SAMP: SAMP Motif; In 30.6 23 0.00049 17.4 0.5 12 79-90 4-15 (20)
97 cd01262 PH_PDK1 3-Phosphoinosi 30.1 36 0.00078 22.8 1.6 15 33-47 25-39 (89)
98 cd01169 HMPP_kinase 4-amino-5- 30.0 88 0.0019 23.2 3.9 40 50-90 201-240 (242)
99 PRK07105 pyridoxamine kinase; 29.5 91 0.002 24.1 4.0 41 50-91 215-255 (284)
100 PRK00977 exodeoxyribonuclease 29.4 1.2E+02 0.0027 19.6 4.0 30 61-90 20-49 (80)
101 PF14769 CLAMP: Flagellar C1a 29.1 89 0.0019 20.7 3.4 30 59-88 23-52 (101)
102 TIGR00687 pyridox_kin pyridoxa 28.9 92 0.002 24.1 3.9 39 53-92 219-257 (286)
103 PRK14063 exodeoxyribonuclease 28.8 1.3E+02 0.0028 19.3 4.0 28 62-89 16-43 (76)
104 PRK14068 exodeoxyribonuclease 28.8 1.2E+02 0.0027 19.5 3.9 28 62-89 17-44 (76)
105 PRK14070 exodeoxyribonuclease 28.7 1.3E+02 0.0029 19.0 4.0 28 62-89 6-33 (69)
106 PF02831 gpW: gpW; InterPro: 28.2 1.1E+02 0.0024 19.4 3.5 34 72-113 1-34 (68)
107 PRK10465 hydrogenase 2-specifi 28.1 43 0.00093 24.8 1.8 55 34-89 81-135 (159)
108 PRK14064 exodeoxyribonuclease 28.1 1.4E+02 0.0029 19.2 4.0 28 62-89 17-44 (75)
109 PF02719 Polysacc_synt_2: Poly 27.9 46 0.001 26.9 2.1 19 72-90 204-222 (293)
110 cd04512 Ntn_Asparaginase_2_lik 27.5 3.1E+02 0.0067 21.7 6.8 57 50-112 176-236 (248)
111 cd04450 DEP_RGS7-like DEP (Dis 26.8 1.4E+02 0.0031 19.2 4.0 38 46-87 23-60 (88)
112 PRK14066 exodeoxyribonuclease 26.7 1.5E+02 0.0032 19.0 4.0 28 62-89 15-42 (75)
113 smart00195 DSPc Dual specifici 26.7 66 0.0014 21.8 2.5 27 55-83 91-117 (138)
114 COG0360 RpsF Ribosomal protein 26.3 1.3E+02 0.0029 20.8 4.0 45 69-119 10-54 (112)
115 PRK12616 pyridoxal kinase; Rev 26.3 1.1E+02 0.0023 23.7 3.8 38 53-91 212-249 (270)
116 TIGR00465 ilvC ketol-acid redu 26.2 79 0.0017 25.5 3.2 40 50-89 183-222 (314)
117 CHL00123 rps6 ribosomal protei 26.1 2E+02 0.0044 19.0 5.0 44 69-118 15-58 (97)
118 COG3227 LasB Zinc metalloprote 26.1 1.1E+02 0.0024 26.7 4.1 42 67-111 125-166 (507)
119 TIGR00097 HMP-P_kinase phospho 25.8 1.1E+02 0.0024 23.2 3.8 39 52-91 202-240 (254)
120 PF05589 DUF768: Protein of un 25.4 1.7E+02 0.0036 18.4 3.9 37 55-91 4-42 (64)
121 cd00173 SH2 Src homology 2 dom 25.4 1.8E+02 0.0038 18.1 4.8 47 67-113 2-50 (94)
122 TIGR03419 NifU_clost FeS clust 25.3 2E+02 0.0044 19.7 4.8 54 35-89 37-91 (121)
123 PF00113 Enolase_C: Enolase, C 25.3 87 0.0019 25.3 3.2 30 69-103 73-103 (295)
124 PTZ00431 pyrroline carboxylate 24.9 1.2E+02 0.0025 23.4 3.8 40 50-89 162-205 (260)
125 cd04441 DEP_2_DEP6 DEP (Dishev 24.8 1.4E+02 0.003 19.7 3.6 32 55-88 34-65 (85)
126 PRK07634 pyrroline-5-carboxyla 24.8 90 0.0019 23.3 3.1 41 50-90 171-215 (245)
127 PRK06928 pyrroline-5-carboxyla 24.7 1.3E+02 0.0029 23.3 4.1 40 50-89 169-213 (277)
128 cd04447 DEP_BRCC3 DEP (Disheve 24.0 1.8E+02 0.0039 19.6 4.1 20 67-86 48-67 (92)
129 PHA02823 chemokine binding pro 23.9 52 0.0011 25.8 1.6 19 70-88 141-159 (255)
130 cd02680 MIT_calpain7_2 MIT: do 23.9 82 0.0018 20.3 2.4 16 72-87 1-16 (75)
131 PF11469 Ribonucleas_3_2: Ribo 23.6 56 0.0012 22.9 1.6 28 59-86 61-89 (120)
132 PF10397 ADSL_C: Adenylosuccin 23.4 85 0.0018 19.9 2.4 22 69-90 15-36 (81)
133 PRK08176 pdxK pyridoxal-pyrido 22.7 1.5E+02 0.0032 23.1 4.0 40 51-91 227-266 (281)
134 PLN00191 enolase 22.2 1.3E+02 0.0028 25.7 3.9 29 70-103 237-266 (457)
135 cd00737 endolysin_autolysin En 22.0 1.5E+02 0.0033 20.3 3.7 42 38-90 20-61 (133)
136 cd01173 pyridoxal_pyridoxamine 21.8 1.5E+02 0.0033 22.2 3.9 40 50-90 211-250 (254)
137 PRK14069 exodeoxyribonuclease 21.8 2E+02 0.0042 19.5 4.0 28 62-89 19-46 (95)
138 TIGR00166 S6 ribosomal protein 21.7 2.4E+02 0.0051 18.2 4.6 43 69-118 10-52 (93)
139 PTZ00344 pyridoxal kinase; Pro 21.6 1.2E+02 0.0027 23.7 3.5 39 51-91 220-258 (296)
140 COG2425 Uncharacterized protei 21.6 2.4E+02 0.0052 24.2 5.3 47 31-80 271-338 (437)
141 cd00127 DSPc Dual specificity 21.6 95 0.0021 20.7 2.5 28 54-83 93-120 (139)
142 PF08529 NusA_N: NusA N-termin 21.4 2.8E+02 0.0061 19.0 6.4 40 69-108 12-51 (122)
143 PF02084 Bindin: Bindin; Inte 20.9 26 0.00057 27.5 -0.5 11 2-12 137-147 (238)
144 cd04443 DEP_GPR155 DEP (Dishev 20.9 2.2E+02 0.0048 18.5 4.0 32 55-88 32-63 (83)
145 cd00735 bacteriophage_T4-like_ 20.7 1.7E+02 0.0037 21.4 3.8 19 71-89 59-77 (164)
146 COG0345 ProC Pyrroline-5-carbo 20.6 1.6E+02 0.0034 23.5 3.8 60 50-109 166-232 (266)
147 cd05173 PI3Kc_IA_beta Phosphoi 20.6 1.7E+02 0.0037 24.3 4.2 30 61-90 316-345 (362)
148 PF09862 DUF2089: Protein of u 20.5 73 0.0016 22.3 1.7 25 58-82 89-113 (113)
149 cd01678 PFL1 Pyruvate formate 20.5 96 0.0021 28.3 2.9 44 42-85 250-296 (738)
150 PTZ00242 protein tyrosine phos 20.3 1.9E+02 0.004 21.0 3.9 33 50-84 106-138 (166)
151 PTZ00347 phosphomethylpyrimidi 20.2 1.6E+02 0.0035 25.0 4.1 39 52-91 440-478 (504)
152 cd04440 DEP_2_P-Rex DEP (Dishe 20.2 2.4E+02 0.0051 19.0 4.1 29 55-85 39-67 (93)
153 PLN02978 pyridoxal kinase 20.1 1.2E+02 0.0026 24.1 3.1 41 50-91 226-267 (308)
No 1
>cd03757 proteasome_beta_type_1 proteasome beta type-1 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.94 E-value=3.1e-26 Score=173.95 Aligned_cols=115 Identities=18% Similarity=0.213 Sum_probs=104.1
Q ss_pred cccchhhHHHhhhcccccccc---cceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCC---------CC
Q psy7294 4 QNSNSLTPILFMNKTLALNSK---KWTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYK---------PD 71 (123)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~---~~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~---------~~ 71 (123)
..+++||.++|.+|..||.+. .|||+ +++|+||++||+|++.+++++|+|+|+.+++++||+.|+ ++
T Consensus 86 ~la~~ls~~ly~~R~~P~~~~~iiaG~D~-~~~p~Ly~~D~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~~~~~ 164 (212)
T cd03757 86 AIAQLLSTILYSRRFFPYYVFNILAGIDE-EGKGVVYSYDPVGSYERETYSAGGSASSLIQPLLDNQVGRKNQNNVERTP 164 (212)
T ss_pred HHHHHHHHHHHhhcCCCeEEEEEEEEEcC-CCCEEEEEEcCccCeeecCEEEEeecHHHHHHHHHHHHHhhccCcCCCCC
Confidence 346789999999888887664 46795 567999999999999999999999999999999999985 89
Q ss_pred CCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCeEEeecccccc
Q psy7294 72 LTVQEAYSVLKQCVHHMKRRTVLSYPKFTVKVLDRTGTVNVLQDLKYS 119 (123)
Q Consensus 72 mt~eEAi~L~~k~i~~a~~Rd~~s~~~~~V~vI~kdG~~~l~~~~k~~ 119 (123)
||+|||++|+++|++++.+||+.++++++|++|+++|++.....+|-|
T Consensus 165 ms~eea~~l~~~~l~~~~~rd~~sg~~i~i~iit~~g~~~~~~~~~~~ 212 (212)
T cd03757 165 LSLEEAVSLVKDAFTSAAERDIYTGDSLEIVIITKDGIEEETFPLRKD 212 (212)
T ss_pred CCHHHHHHHHHHHHHHHHHhCcccCCCEEEEEEcCCCEEEEeeccCCC
Confidence 999999999999999999999999999999999999998888777754
No 2
>cd03761 proteasome_beta_type_5 proteasome beta type-5 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.94 E-value=5.2e-26 Score=169.62 Aligned_cols=107 Identities=23% Similarity=0.290 Sum_probs=99.3
Q ss_pred cccchhhHHHhhhcccccccc---cceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCCCCCCHHHHHHH
Q psy7294 4 QNSNSLTPILFMNKTLALNSK---KWTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEAYSV 80 (123)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~---~~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~~mt~eEAi~L 80 (123)
.-+++|++++++++..||.+. .||| ..||+||++||+|++.+++++|+|+|+.+++++||+.|+++||.|||+++
T Consensus 78 ~la~~ls~~l~~~~~~~~~v~~li~G~D--~~g~~L~~~dp~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~eea~~l 155 (188)
T cd03761 78 AASKLLSNMLYQYKGMGLSMGTMICGWD--KTGPGLYYVDSDGTRLKGDLFSVGSGSTYAYGVLDSGYRYDLSVEEAYDL 155 (188)
T ss_pred HHHHHHHHHHHhcCCCCeEEEEEEEEEe--CCCCEEEEEcCCceEEEcCeEEEcccHHHHHHHHHhcCCCCCCHHHHHHH
Confidence 346889999999988887653 3679 46899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccccCCcEEEEEEcCCCeEEe
Q psy7294 81 LKQCVHHMKRRTVLSYPKFTVKVLDRTGTVNV 112 (123)
Q Consensus 81 ~~k~i~~a~~Rd~~s~~~~~V~vI~kdG~~~l 112 (123)
+.+|+..+.+||+.++++++|.+|+++|++++
T Consensus 156 ~~~~l~~~~~rd~~sg~~~~v~ii~~~g~~~~ 187 (188)
T cd03761 156 ARRAIYHATHRDAYSGGNVNLYHVREDGWRKI 187 (188)
T ss_pred HHHHHHHHHHhcccCCCCeEEEEEcCCceEEc
Confidence 99999999999999999999999999999875
No 3
>cd03759 proteasome_beta_type_3 proteasome beta type-3 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.93 E-value=9.3e-26 Score=169.10 Aligned_cols=108 Identities=13% Similarity=0.100 Sum_probs=98.6
Q ss_pred ccchhhHHHhhhccccccccc---ceeCCCCceEEEEECCCCceeeeC-eEEEcccHHHHHHHHHccCCCCCCHHHHHHH
Q psy7294 5 NSNSLTPILFMNKTLALNSKK---WTDCNTFGVTLYKGDPYGFMLEVP-YAYIGINGFLTASLVDKYYKPDLTVQEAYSV 80 (123)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~---~~D~~~~gP~Ly~iD~~Gs~~~~~-~~a~G~Gs~~~~~~Ld~~y~~~mt~eEAi~L 80 (123)
-+++|++++|.+|..||-+.. |||+ ++||+||++||+|++..++ ++|+|+|+.+++++||+.|+++||+|||++|
T Consensus 82 la~~l~~~ly~~r~~P~~v~~ii~G~D~-~~~p~Ly~~D~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l 160 (195)
T cd03759 82 FSSLISSLLYEKRFGPYFVEPVVAGLDP-DGKPFICTMDLIGCPSIPSDFVVSGTASEQLYGMCESLWRPDMEPDELFET 160 (195)
T ss_pred HHHHHHHHHHHhcCCCceEEEEEEEEcC-CCCEEEEEEcCCCcccccCCEEEEcccHHHHHHHHHhccCCCCCHHHHHHH
Confidence 467899999888888877643 6796 6679999999999998888 9999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccccCCcEEEEEEcCCCeEEee
Q psy7294 81 LKQCVHHMKRRTVLSYPKFTVKVLDRTGTVNVL 113 (123)
Q Consensus 81 ~~k~i~~a~~Rd~~s~~~~~V~vI~kdG~~~l~ 113 (123)
+++||+.+.+||+.++++++|++|+++|+++..
T Consensus 161 ~~~~l~~~~~rd~~~~~~~~i~ii~~~g~~~~~ 193 (195)
T cd03759 161 ISQALLSAVDRDALSGWGAVVYIITKDKVTTRT 193 (195)
T ss_pred HHHHHHHHHhhCcccCCceEEEEEcCCcEEEEe
Confidence 999999999999999999999999999986643
No 4
>cd03760 proteasome_beta_type_4 proteasome beta type-4 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.93 E-value=4.3e-25 Score=165.60 Aligned_cols=108 Identities=22% Similarity=0.274 Sum_probs=98.2
Q ss_pred cccchhhHHHhhhc--cccccccc---ceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCCC--CCCHHH
Q psy7294 4 QNSNSLTPILFMNK--TLALNSKK---WTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKP--DLTVQE 76 (123)
Q Consensus 4 ~~~~~~~~~~~~~~--~~~~~~~~---~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~--~mt~eE 76 (123)
..+++|++++|.++ ..||.+.. |||+ +.||+||++||+|++.+++++|+|+|+.+++++||+.|++ +||+||
T Consensus 81 ~la~~i~~~~y~~~~~~rP~~v~~iiaG~D~-~~gp~Ly~~D~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~ms~ee 159 (197)
T cd03760 81 EIHSYLTRVLYNRRSKMNPLWNTLVVGGVDN-EGEPFLGYVDLLGTAYEDPHVATGFGAYLALPLLREAWEKKPDLTEEE 159 (197)
T ss_pred HHHHHHHHHHHHHhhcCCCceEEEEEEEEcC-CCCEEEEEEcCCccEEECCEeEEccHHHHHHHHHHhhcCCCCCCCHHH
Confidence 34678899998865 67877643 6895 5789999999999999999999999999999999999999 999999
Q ss_pred HHHHHHHHHHHHHhcccccCCcEEEEEEcCCCeEEe
Q psy7294 77 AYSVLKQCVHHMKRRTVLSYPKFTVKVLDRTGTVNV 112 (123)
Q Consensus 77 Ai~L~~k~i~~a~~Rd~~s~~~~~V~vI~kdG~~~l 112 (123)
|++|+++|++.+.+||+.++++++|.+|+++|++..
T Consensus 160 a~~l~~~~l~~~~~rd~~~~~~~~i~ii~~~g~~~~ 195 (197)
T cd03760 160 ARALIEECMKVLYYRDARSINKYQIAVVTKEGVEIE 195 (197)
T ss_pred HHHHHHHHHHHHHHhccccCCceEEEEECCCCEEeC
Confidence 999999999999999999999999999999998764
No 5
>cd03758 proteasome_beta_type_2 proteasome beta type-2 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.93 E-value=4.7e-25 Score=165.18 Aligned_cols=108 Identities=33% Similarity=0.581 Sum_probs=96.3
Q ss_pred ccchhhHHHhh-hcc-cccccc---cceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCCCCCCHHHHHH
Q psy7294 5 NSNSLTPILFM-NKT-LALNSK---KWTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEAYS 79 (123)
Q Consensus 5 ~~~~~~~~~~~-~~~-~~~~~~---~~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~~mt~eEAi~ 79 (123)
-+++|+++++. .+. .||.+. .|||+ +.||+||++||+|++.+++++|+|+|+.+++++||+.|+++||.|||++
T Consensus 80 la~~l~~~~~~~~~~~rP~~~~~li~G~d~-~~~p~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~ms~eeai~ 158 (193)
T cd03758 80 AANFTRRELAESLRSRTPYQVNLLLAGYDK-VEGPSLYYIDYLGTLVKVPYAAHGYGAYFCLSILDRYYKPDMTVEEALE 158 (193)
T ss_pred HHHHHHHHHHHHhhcCCCeEEEEEEEEEcC-CCCcEEEEECCCcceEECCeeEEeecHHHHHHHHHhccCCCCCHHHHHH
Confidence 46788888843 233 587764 36796 5789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccccCCcEEEEEEcCCCeEEee
Q psy7294 80 VLKQCVHHMKRRTVLSYPKFTVKVLDRTGTVNVL 113 (123)
Q Consensus 80 L~~k~i~~a~~Rd~~s~~~~~V~vI~kdG~~~l~ 113 (123)
++.+|++.+.+||+.++++++|++|+++|++.++
T Consensus 159 l~~~a~~~~~~rd~~~~~~i~i~ii~~~g~~~~~ 192 (193)
T cd03758 159 LMKKCIKELKKRFIINLPNFTVKVVDKDGIRDLE 192 (193)
T ss_pred HHHHHHHHHHHhccccCCceEEEEEcCCCeEeCC
Confidence 9999999999999999999999999999998754
No 6
>PTZ00488 Proteasome subunit beta type-5; Provisional
Probab=99.92 E-value=4e-25 Score=172.13 Aligned_cols=110 Identities=21% Similarity=0.171 Sum_probs=101.6
Q ss_pred cccchhhHHHhhhccccccc---ccceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCCCCCCHHHHHHH
Q psy7294 4 QNSNSLTPILFMNKTLALNS---KKWTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEAYSV 80 (123)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~---~~~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~~mt~eEAi~L 80 (123)
.-+++||.+++++|.+|+++ =.||| .+||+||++||+|++.+++++|+|+|+.+++++||+.|+++||.|||++|
T Consensus 117 ~la~~ls~~l~~~R~~~~~v~~iiaG~D--~~gp~Ly~vDp~Gs~~~~~~~a~G~gs~~~~~~Le~~~k~dms~eEai~l 194 (247)
T PTZ00488 117 AASKILANIVWNYKGMGLSMGTMICGWD--KKGPGLFYVDNDGTRLHGNMFSCGSGSTYAYGVLDAGFKWDLNDEEAQDL 194 (247)
T ss_pred HHHHHHHHHHHhcCCCCeeEEEEEEEEe--CCCCEEEEEcCCcceeecCCEEEccCHHHHHHHHHhcCcCCCCHHHHHHH
Confidence 35688999999999888874 45789 46799999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccccCCcEEEEEEcCCCeEEeecc
Q psy7294 81 LKQCVHHMKRRTVLSYPKFTVKVLDRTGTVNVLQD 115 (123)
Q Consensus 81 ~~k~i~~a~~Rd~~s~~~~~V~vI~kdG~~~l~~~ 115 (123)
+++||+++.+||+.++++++|++|+++|++.++..
T Consensus 195 ~~kal~~~~~Rd~~sg~~~ei~iI~k~g~~~l~~~ 229 (247)
T PTZ00488 195 GRRAIYHATFRDAYSGGAINLYHMQKDGWKKISAD 229 (247)
T ss_pred HHHHHHHHHHhccccCCCeEEEEEcCCccEECCHH
Confidence 99999999999999999999999999999888743
No 7
>cd03764 proteasome_beta_archeal Archeal proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme for non-lysosomal protein degradation in both the cytosol and the nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are both members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.92 E-value=7.6e-25 Score=162.70 Aligned_cols=108 Identities=24% Similarity=0.269 Sum_probs=99.9
Q ss_pred cccchhhHHHhhhccccccccc---ceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCCCCCCHHHHHHH
Q psy7294 4 QNSNSLTPILFMNKTLALNSKK---WTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEAYSV 80 (123)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~---~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~~mt~eEAi~L 80 (123)
.-+++++.++++++.+||.+.. |+|+ +||+||++||+|++.+++++|+|+|+.+++++||+.|+++||.|||+++
T Consensus 78 ~l~~~i~~~~~~~~~~P~~~~~lvaG~d~--~~~~ly~~D~~G~~~~~~~~a~G~g~~~~~~~L~~~~~~~~~~~ea~~l 155 (188)
T cd03764 78 ALATLLSNILNSSKYFPYIVQLLIGGVDE--EGPHLYSLDPLGSIIEDKYTATGSGSPYAYGVLEDEYKEDMTVEEAKKL 155 (188)
T ss_pred HHHHHHHHHHHhcCCCCcEEEEEEEEEeC--CCCEEEEECCCCCEEEcCEEEEcCcHHHHHHHHHhcCCCCCCHHHHHHH
Confidence 3467889999999999987643 7894 6799999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccccCCcEEEEEEcCCCeEEee
Q psy7294 81 LKQCVHHMKRRTVLSYPKFTVKVLDRTGTVNVL 113 (123)
Q Consensus 81 ~~k~i~~a~~Rd~~s~~~~~V~vI~kdG~~~l~ 113 (123)
+++|++.+.+||+.++++++|.+|+++|++.++
T Consensus 156 ~~~~l~~~~~rd~~~~~~i~i~iv~~~g~~~~~ 188 (188)
T cd03764 156 AIRAIKSAIERDSASGDGIDVVVITKDGYKELE 188 (188)
T ss_pred HHHHHHHHHhhcCCCCCcEEEEEECCCCeEeCC
Confidence 999999999999999999999999999988764
No 8
>KOG0177|consensus
Probab=99.92 E-value=3.2e-25 Score=165.59 Aligned_cols=89 Identities=36% Similarity=0.652 Sum_probs=85.7
Q ss_pred cceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEE
Q psy7294 25 KWTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEAYSVLKQCVHHMKRRTVLSYPKFTVKVL 104 (123)
Q Consensus 25 ~~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~~mt~eEAi~L~~k~i~~a~~Rd~~s~~~~~V~vI 104 (123)
.|||+ ..||.||++|+.|+..+.+++++|+|+.||.++||.+|+|+||.|||++|+++|+.++++|.+++.++|.|.||
T Consensus 105 aGYd~-~~gp~L~~iDyla~~~~vpy~~hGy~~~f~~sIlDr~Y~pdmt~eea~~lmkKCv~El~kRlvin~~~f~v~IV 183 (200)
T KOG0177|consen 105 AGYDP-EEGPELYYIDYLATLVSVPYAAHGYGSYFCLSILDRYYKPDMTIEEALDLMKKCVLELKKRLVINLPGFIVKIV 183 (200)
T ss_pred eccCC-CCCCceeeehhhhhcccCCcccccchhhhhHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHhcccCCCCcEEEEE
Confidence 48998 66799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCeEEeec
Q psy7294 105 DRTGTVNVLQ 114 (123)
Q Consensus 105 ~kdG~~~l~~ 114 (123)
||||+|.+..
T Consensus 184 dkdGir~~~~ 193 (200)
T KOG0177|consen 184 DKDGIRKLDD 193 (200)
T ss_pred cCCCceeccc
Confidence 9999998864
No 9
>TIGR03634 arc_protsome_B proteasome endopeptidase complex, archaeal, beta subunit. This protein family describes the archaeal proteasome beta subunit, homologous to both the alpha subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=99.92 E-value=1.4e-24 Score=160.75 Aligned_cols=105 Identities=24% Similarity=0.327 Sum_probs=97.2
Q ss_pred ccccchhhHHHhhhcccccccc---cceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCCCCCCHHHHHH
Q psy7294 3 RQNSNSLTPILFMNKTLALNSK---KWTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEAYS 79 (123)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~---~~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~~mt~eEAi~ 79 (123)
+.-+++|++++++++.+||.+. .|+| ++||+||++||+|++.+++++++|+|+.+++++||+.|+++||.+||++
T Consensus 78 ~~~a~~l~~~~~~~~~rP~~v~~ivaG~d--~~g~~Ly~~d~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~ 155 (185)
T TIGR03634 78 KALATLLSNILNSNRFFPFIVQLLVGGVD--EEGPHLYSLDPAGGIIEDDYTATGSGSPVAYGVLEDEYREDMSVEEAKK 155 (185)
T ss_pred HHHHHHHHHHHHhcCCCCeEEEEEEEEEe--CCCCEEEEECCCCCeEECCEEEEcCcHHHHHHHHHhcCCCCCCHHHHHH
Confidence 3457889999999999998763 3679 4579999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccccCCcEEEEEEcCCCe
Q psy7294 80 VLKQCVHHMKRRTVLSYPKFTVKVLDRTGT 109 (123)
Q Consensus 80 L~~k~i~~a~~Rd~~s~~~~~V~vI~kdG~ 109 (123)
++++|++.+.+||+.++++++|++|+++|+
T Consensus 156 l~~~~l~~~~~r~~~~~~~~~v~ii~~~g~ 185 (185)
T TIGR03634 156 LAVRAIKSAIERDVASGNGIDVAVITKDGV 185 (185)
T ss_pred HHHHHHHHHHHhcccCCCCEEEEEEcCCCC
Confidence 999999999999999999999999999985
No 10
>cd03762 proteasome_beta_type_6 proteasome beta type-6 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.92 E-value=2.8e-24 Score=159.66 Aligned_cols=107 Identities=19% Similarity=0.240 Sum_probs=96.5
Q ss_pred ccccchhhHHHhhhcccccccc---cceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCCCCCCHHHHHH
Q psy7294 3 RQNSNSLTPILFMNKTLALNSK---KWTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEAYS 79 (123)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~---~~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~~mt~eEAi~ 79 (123)
+..+++|+.++++++ .||.+. .|+|+ ++||+||++||.|++.+++++++|+|+.+++++||+.|+++||.|||++
T Consensus 77 ~~~a~~l~~~~~~~~-~~~~~~~ii~G~d~-~~gp~ly~~d~~G~~~~~~~~~~G~g~~~~~~~Le~~~~~~~s~~ea~~ 154 (188)
T cd03762 77 KTAASLFKNLCYNYK-EMLSAGIIVAGWDE-QNGGQVYSIPLGGMLIRQPFAIGGSGSTYIYGYVDANYKPGMTLEECIK 154 (188)
T ss_pred HHHHHHHHHHHHhcc-ccceeeEEEEEEcC-CCCcEEEEECCCCCEEecCEEEEcccHHHHHHHHHhcCCCCCCHHHHHH
Confidence 345678888887764 556664 47896 6789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccccCCcEEEEEEcCCCeEE
Q psy7294 80 VLKQCVHHMKRRTVLSYPKFTVKVLDRTGTVN 111 (123)
Q Consensus 80 L~~k~i~~a~~Rd~~s~~~~~V~vI~kdG~~~ 111 (123)
|+++|++.+.+||+.++++++|.+|+++|+++
T Consensus 155 l~~~al~~~~~rd~~~~~~~~i~~i~~~g~~~ 186 (188)
T cd03762 155 FVKNALSLAMSRDGSSGGVIRLVIITKDGVER 186 (188)
T ss_pred HHHHHHHHHHHhccccCCCEEEEEECCCCEEE
Confidence 99999999999999999999999999999865
No 11
>cd03763 proteasome_beta_type_7 proteasome beta type-7 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.92 E-value=3.5e-24 Score=159.59 Aligned_cols=106 Identities=21% Similarity=0.273 Sum_probs=94.9
Q ss_pred ccchhhHHHhhhcccccccc---cceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCCCCCCHHHHHHHH
Q psy7294 5 NSNSLTPILFMNKTLALNSK---KWTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEAYSVL 81 (123)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~---~~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~~mt~eEAi~L~ 81 (123)
-+++|+++++..+. ||.+. .|+| ++||+||++||+|++.+++++|+|+|+.+++++||+.|+|+||.+||++|+
T Consensus 79 ~a~~l~~~l~~~~~-p~~v~~ivaG~d--~~g~~ly~~d~~G~~~~~~~~a~G~~~~~~~~~L~~~~~~~ls~~ea~~l~ 155 (189)
T cd03763 79 ALTMLKQHLFRYQG-HIGAALVLGGVD--YTGPHLYSIYPHGSTDKLPFVTMGSGSLAAMSVLEDRYKPDMTEEEAKKLV 155 (189)
T ss_pred HHHHHHHHHHHcCC-ccceeEEEEeEc--CCCCEEEEECCCCCEEecCEEEEcCCHHHHHHHHHhhcCCCCCHHHHHHHH
Confidence 35788888876543 65443 3668 457999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccccCCcEEEEEEcCCCeEEee
Q psy7294 82 KQCVHHMKRRTVLSYPKFTVKVLDRTGTVNVL 113 (123)
Q Consensus 82 ~k~i~~a~~Rd~~s~~~~~V~vI~kdG~~~l~ 113 (123)
++||+.+.+||+.++++++|++|+++|+++.+
T Consensus 156 ~~~l~~~~~rd~~~~~~~~v~ii~~~g~~~~~ 187 (189)
T cd03763 156 CEAIEAGIFNDLGSGSNVDLCVITKDGVEYLR 187 (189)
T ss_pred HHHHHHHHHhcCcCCCceEEEEEcCCcEEEec
Confidence 99999999999999999999999999998765
No 12
>KOG0179|consensus
Probab=99.91 E-value=2.6e-24 Score=163.17 Aligned_cols=114 Identities=16% Similarity=0.205 Sum_probs=105.4
Q ss_pred ccchhhHHHhhhccccccc---ccceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccC-----------CC
Q psy7294 5 NSNSLTPILFMNKTLALNS---KKWTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYY-----------KP 70 (123)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~---~~~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y-----------~~ 70 (123)
.+++||.+||.+|++||.+ -.|+|+ .++|.+|+.||.|++.+..|.|.|+|+.+++|+||+.. ++
T Consensus 108 ~A~lls~~LY~kRFFPYYv~~ilaGiDe-eGKG~VySyDPvGsyer~~~~AgGsa~~mI~PfLDnQi~~kn~~~e~~~~~ 186 (235)
T KOG0179|consen 108 AAQLLSTILYSKRFFPYYVFNILAGIDE-EGKGAVYSYDPVGSYERVTCRAGGSAASMIQPFLDNQIGHKNQNLENAERT 186 (235)
T ss_pred HHHHHHHHHhhcccccceeeeeeecccc-cCceeEEeecCCcceeeeeeecCCcchhhhhhhhhhhccCcCcccccCccc
Confidence 4789999999999999877 458896 67899999999999999999999999999999999853 24
Q ss_pred CCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCeEEeecccccc
Q psy7294 71 DLTVQEAYSVLKQCVHHMKRRTVLSYPKFTVKVLDRTGTVNVLQDLKYS 119 (123)
Q Consensus 71 ~mt~eEAi~L~~k~i~~a~~Rd~~s~~~~~V~vI~kdG~~~l~~~~k~~ 119 (123)
.||+|||+.|+++++..|.+||+.++++++|+||+++|+++...+||+|
T Consensus 187 ~Ls~e~ai~lv~d~F~SAaERdI~tGD~l~i~I~tk~gV~~e~~~LrkD 235 (235)
T KOG0179|consen 187 PLSLERAIRLVKDAFTSAAERDIYTGDKLEICIITKDGVEVETLPLRKD 235 (235)
T ss_pred ccCHHHHHHHHHHHhhhhhhcccccCCcEEEEEEecCCEEEEeeeccCC
Confidence 6999999999999999999999999999999999999999999999975
No 13
>cd03765 proteasome_beta_bacterial Bacterial proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.91 E-value=6.1e-24 Score=164.78 Aligned_cols=115 Identities=15% Similarity=0.186 Sum_probs=96.1
Q ss_pred cccchhhHHHhh----hc------ccccccc---cceeCCCCceEEEEECCCCceeee----CeEEEcccHHHHHHHHHc
Q psy7294 4 QNSNSLTPILFM----NK------TLALNSK---KWTDCNTFGVTLYKGDPYGFMLEV----PYAYIGINGFLTASLVDK 66 (123)
Q Consensus 4 ~~~~~~~~~~~~----~~------~~~~~~~---~~~D~~~~gP~Ly~iD~~Gs~~~~----~~~a~G~Gs~~~~~~Ld~ 66 (123)
+.++.+++++.+ .+ .+||.+. +|||+ +.||+||++||+|++.++ +|+|+|. +.+++++||+
T Consensus 82 ~la~~i~~~l~~~~~q~~~~~~~~~rp~gvslIigG~D~-~~Gp~LY~idpsG~~~e~~a~~~~~AiG~-~~~a~~~Lek 159 (236)
T cd03765 82 DAARYVGETLREVQEQDREALKKAGIDFSASFILGGQIK-GEEPRLFLIYPQGNFIEATPDTPFLQIGE-TKYGKPILDR 159 (236)
T ss_pred HHHHHHHHHHHHHHhhcccccccCCcceEEEEEEEeEEC-CCCCEEEEECCCCCEEeecCCCceeeeCC-chhhHHHHHH
Confidence 345666666544 33 4687774 47896 578999999999999999 5689995 7999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCeEE-eeccccccc
Q psy7294 67 YYKPDLTVQEAYSVLKQCVHHMKRRTVLSYPKFTVKVLDRTGTVN-VLQDLKYSD 120 (123)
Q Consensus 67 ~y~~~mt~eEAi~L~~k~i~~a~~Rd~~s~~~~~V~vI~kdG~~~-l~~~~k~~~ 120 (123)
+|+++||+|||++|+++||.++.+||..++++|+|.+|+++|+++ ....+-.||
T Consensus 160 ~yk~~ms~eeai~la~~al~~a~~rd~~sg~~iev~vI~k~G~~~~~~~~~~~~~ 214 (236)
T cd03765 160 VITPDTSLEDAAKCALVSMDSTMRSNLSVGPPLDLLVYERDSLQVGHYRRIEEDD 214 (236)
T ss_pred hcCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEECCCeeeeeeEEecCCC
Confidence 999999999999999999999999999999999999999999887 444444444
No 14
>COG0638 PRE1 20S proteasome, alpha and beta subunits [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=1.5e-23 Score=162.20 Aligned_cols=110 Identities=22% Similarity=0.227 Sum_probs=101.6
Q ss_pred cccchhhHHHhhhcc--ccccccc---ceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCCCCCCHHHHH
Q psy7294 4 QNSNSLTPILFMNKT--LALNSKK---WTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEAY 78 (123)
Q Consensus 4 ~~~~~~~~~~~~~~~--~~~~~~~---~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~~mt~eEAi 78 (123)
..+++||+++++.+. +||.+.. |+|+ +||+||++||+|++.+++++|+|+|+.+++++||++|+++|++|||+
T Consensus 108 ~la~~ls~~l~~~~~~~rP~gv~~iiaG~d~--~~p~Ly~~Dp~G~~~~~~~~a~Gsgs~~a~~~Le~~y~~~m~~eeai 185 (236)
T COG0638 108 ALAKLLSNILQEYTQSGRPYGVSLLVAGVDD--GGPRLYSTDPSGSYNEYKATAIGSGSQFAYGFLEKEYREDLSLEEAI 185 (236)
T ss_pred HHHHHHHHHHHHhccCcccceEEEEEEEEcC--CCCeEEEECCCCceeecCEEEEcCCcHHHHHHHHhhccCCCCHHHHH
Confidence 357899999999988 9999866 7885 78999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccccCCcEEEEEEcC-CCeEEeecc
Q psy7294 79 SVLKQCVHHMKRRTVLSYPKFTVKVLDR-TGTVNVLQD 115 (123)
Q Consensus 79 ~L~~k~i~~a~~Rd~~s~~~~~V~vI~k-dG~~~l~~~ 115 (123)
+|+.+||.++.+||..++++++|.+|++ +|.+.+...
T Consensus 186 ~la~~al~~a~~rd~~s~~~~~v~vi~~~~~~~~~~~~ 223 (236)
T COG0638 186 ELAVKALRAAIERDAASGGGIEVAVITKDEGFRKLDGE 223 (236)
T ss_pred HHHHHHHHHHHhccccCCCCeEEEEEEcCCCeEEcCHH
Confidence 9999999999999999999999999999 688777643
No 15
>cd01912 proteasome_beta proteasome beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.90 E-value=3.6e-23 Score=153.13 Aligned_cols=107 Identities=26% Similarity=0.404 Sum_probs=98.1
Q ss_pred ccchhhHHHhhhcccccccc---cceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCCCCCCHHHHHHHH
Q psy7294 5 NSNSLTPILFMNKTLALNSK---KWTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEAYSVL 81 (123)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~---~~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~~mt~eEAi~L~ 81 (123)
-+++++.+++.++..||.+. .|+|+ +++|+||++||.|++.+++++|+|+|+.+++++||+.|+++||.|||++++
T Consensus 79 l~~~l~~~~~~~~~~P~~~~~iv~G~d~-~~~~~l~~id~~G~~~~~~~~a~G~~~~~~~~~Le~~~~~~~s~~ea~~~~ 157 (189)
T cd01912 79 AANLLSNILYSYRGFPYYVSLIVGGVDK-GGGPFLYYVDPLGSLIEAPFVATGSGSKYAYGILDRGYKPDMTLEEAVELV 157 (189)
T ss_pred HHHHHHHHHHhcCCCCeEEEEEEEEEcC-CCCeEEEEECCCCCeEecCEEEEcccHHHHHHHHHhccCCCCCHHHHHHHH
Confidence 35778888888777888775 47895 578999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccccCCcEEEEEEcCCCeEEe
Q psy7294 82 KQCVHHMKRRTVLSYPKFTVKVLDRTGTVNV 112 (123)
Q Consensus 82 ~k~i~~a~~Rd~~s~~~~~V~vI~kdG~~~l 112 (123)
++|++.+.+||+.++++++|.+|+++|++..
T Consensus 158 ~~~l~~~~~~d~~~~~~~~v~vi~~~g~~~~ 188 (189)
T cd01912 158 KKAIDSAIERDLSSGGGVDVAVITKDGVEEL 188 (189)
T ss_pred HHHHHHHHHhcCccCCcEEEEEECCCCEEEc
Confidence 9999999999999999999999999998764
No 16
>cd03750 proteasome_alpha_type_2 proteasome_alpha_type_2. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.88 E-value=5.4e-22 Score=151.92 Aligned_cols=105 Identities=16% Similarity=0.184 Sum_probs=92.3
Q ss_pred cchhhHHH--hhh--ccccccccc---ceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCCCCCCHHHHH
Q psy7294 6 SNSLTPIL--FMN--KTLALNSKK---WTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEAY 78 (123)
Q Consensus 6 ~~~~~~~~--~~~--~~~~~~~~~---~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~~mt~eEAi 78 (123)
+++|+.++ |.+ +.+||.+.. |||+ .||+||++||+|++.+++++|+|+|+.+++++||++|+++||+|||+
T Consensus 106 a~~l~~~~~~~t~~~~~rP~~v~~li~G~D~--~g~~Ly~~d~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~eeai 183 (227)
T cd03750 106 VREIASVMQEYTQSGGVRPFGVSLLIAGWDE--GGPYLYQVDPSGSYFTWKATAIGKNYSNAKTFLEKRYNEDLELEDAI 183 (227)
T ss_pred HHHHHHHHHHhcCCCCCCChheEEEEEEEeC--CCCEEEEECCCCCEEeeeEEEECCCCHHHHHHHHhhccCCCCHHHHH
Confidence 56788877 433 367876643 7894 48999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccccCCcEEEEEEcCC-CeEEee
Q psy7294 79 SVLKQCVHHMKRRTVLSYPKFTVKVLDRT-GTVNVL 113 (123)
Q Consensus 79 ~L~~k~i~~a~~Rd~~s~~~~~V~vI~kd-G~~~l~ 113 (123)
+++++||.++.+|+ +++++++|++|+++ |++.++
T Consensus 184 ~l~~~~l~~~~~~~-l~~~~iev~iv~~~~~~~~~~ 218 (227)
T cd03750 184 HTAILTLKEGFEGQ-MTEKNIEIGICGETKGFRLLT 218 (227)
T ss_pred HHHHHHHHHHhccc-CCCCcEEEEEEECCCCEEECC
Confidence 99999999999997 59999999999996 787764
No 17
>TIGR03690 20S_bact_beta proteasome, beta subunit, bacterial type. Members of this family are the beta subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In Streptomyces, maturation during proteasome assembly was shown to remove a 53-amino acid propeptide. Most of the length of the propeptide is not included in this model.
Probab=99.87 E-value=7.2e-22 Score=150.74 Aligned_cols=110 Identities=20% Similarity=0.198 Sum_probs=93.3
Q ss_pred ccchhhHHHhhh---cccccccc---cceeCCCCceEEEEECCCC-ceeeeCeEEEcccHHHHHHHHHccCCCCCCHHHH
Q psy7294 5 NSNSLTPILFMN---KTLALNSK---KWTDCNTFGVTLYKGDPYG-FMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEA 77 (123)
Q Consensus 5 ~~~~~~~~~~~~---~~~~~~~~---~~~D~~~~gP~Ly~iD~~G-s~~~~~~~a~G~Gs~~~~~~Ld~~y~~~mt~eEA 77 (123)
-+++||.++++. ...||.+. .|||+..++|+||++||+| ++..++++|+|+|+.+++++||+.|+++||.|||
T Consensus 81 la~~ls~~~~~~~~~~~rp~~v~~iiaG~D~~~~~~~Ly~~Dp~G~~~~~~~~~a~G~g~~~a~~~Le~~~~~~ms~eea 160 (219)
T TIGR03690 81 KANRLAAMVRGNLPAAMQGLAVVPLLAGYDLDAGAGRIFSYDVTGGRYEERGYHAVGSGSVFAKGALKKLYSPDLDEDDA 160 (219)
T ss_pred HHHHHHHHHHhhhhhccCCceEEEEEEEECCCCCCcEEEEEeCCCCeeecCCeEEEeccHHHHHHHHHhcCCCCcCHHHH
Confidence 356777788653 34565543 3789634689999999999 5888899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccccCCc-------EEEEEEcCCCeEEeec
Q psy7294 78 YSVLKQCVHHMKRRTVLSYPK-------FTVKVLDRTGTVNVLQ 114 (123)
Q Consensus 78 i~L~~k~i~~a~~Rd~~s~~~-------~~V~vI~kdG~~~l~~ 114 (123)
++++++||..+.+||..+++. ++|++|+++|++.++.
T Consensus 161 i~l~~~al~~~~~~d~~s~~~~~~~~~~~ei~ii~~~g~~~l~~ 204 (219)
T TIGR03690 161 LRVAVEALYDAADDDSATGGPDLVRGIYPTVVVITADGARRVPE 204 (219)
T ss_pred HHHHHHHHHHHHhcccccCCcccccccccEEEEEccCceEEcCH
Confidence 999999999999999877775 3999999999988764
No 18
>TIGR03633 arc_protsome_A proteasome endopeptidase complex, archaeal, alpha subunit. This protein family describes the archaeal proteasome alpha subunit, homologous to both the beta subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=99.87 E-value=1.6e-21 Score=148.74 Aligned_cols=106 Identities=17% Similarity=0.224 Sum_probs=92.1
Q ss_pred ccchhhHHH--hhh--ccccccccc---ceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCCCCCCHHHH
Q psy7294 5 NSNSLTPIL--FMN--KTLALNSKK---WTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEA 77 (123)
Q Consensus 5 ~~~~~~~~~--~~~--~~~~~~~~~---~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~~mt~eEA 77 (123)
-++.|+.++ |.+ +.+||.+.. |+| ++||+||++||.|++.+++++|+|+|+.+++++||+.|+++||.|||
T Consensus 107 la~~ls~~l~~~~~~~~~rP~~v~~ll~G~d--~~~~~Ly~~D~~G~~~~~~~~a~G~g~~~~~~~L~~~~~~~~~~eea 184 (224)
T TIGR03633 107 LAKKICDLKQQYTQHGGVRPFGVALLIAGVD--DGGPRLFETDPSGALLEYKATAIGAGRQAVTEFLEKEYREDLSLDEA 184 (224)
T ss_pred HHHHHHHHHHHhcCCCCccccceEEEEEEEe--CCcCEEEEECCCCCeecceEEEECCCCHHHHHHHHHhccCCCCHHHH
Confidence 456778876 322 356777643 689 56899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccccCCcEEEEEEcCCC--eEEee
Q psy7294 78 YSVLKQCVHHMKRRTVLSYPKFTVKVLDRTG--TVNVL 113 (123)
Q Consensus 78 i~L~~k~i~~a~~Rd~~s~~~~~V~vI~kdG--~~~l~ 113 (123)
++|+++|+..+.+ |+.++++++|.+|+++| .+.++
T Consensus 185 i~l~~~al~~~~~-d~~~~~~i~i~ii~~~g~~~~~~~ 221 (224)
T TIGR03633 185 IELALKALYSAVE-DKLTPENVEVAYITVEDKKFRKLS 221 (224)
T ss_pred HHHHHHHHHHHhc-ccCCCCcEEEEEEEcCCCcEEECC
Confidence 9999999999888 89999999999999998 55443
No 19
>KOG0175|consensus
Probab=99.86 E-value=6.9e-22 Score=153.60 Aligned_cols=107 Identities=23% Similarity=0.273 Sum_probs=101.9
Q ss_pred ccchhhHHHhhhccccccccc---ceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCCCCCCHHHHHHHH
Q psy7294 5 NSNSLTPILFMNKTLALNSKK---WTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEAYSVL 81 (123)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~---~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~~mt~eEAi~L~ 81 (123)
+|..||||+++-|.+.|+... ||| +.||.||+||.-|+-.+.+-.++||||.+|+++||..|++||+.|||++|+
T Consensus 150 ASKllsN~~y~YkGmGLsmGtMi~G~D--k~GP~lyYVDseG~Rl~G~~FSVGSGs~yAYGVLDsgYr~dls~eEA~~L~ 227 (285)
T KOG0175|consen 150 ASKLLSNMVYQYKGMGLSMGTMIAGWD--KKGPGLYYVDSEGTRLSGDLFSVGSGSTYAYGVLDSGYRYDLSDEEAYDLA 227 (285)
T ss_pred HHHHHHHHHhhccCcchhheeeEeecc--CCCCceEEEcCCCCEecCceEeecCCCceeEEeeccCCCCCCCHHHHHHHH
Confidence 678999999999999999865 579 789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccccCCcEEEEEEcCCCeEEee
Q psy7294 82 KQCVHHMKRRTVLSYPKFTVKVLDRTGTVNVL 113 (123)
Q Consensus 82 ~k~i~~a~~Rd~~s~~~~~V~vI~kdG~~~l~ 113 (123)
++||..|.+||..+|..+.+.-|+.+|+..++
T Consensus 228 rrAI~hAThRDaySGG~vnlyHv~edGW~~v~ 259 (285)
T KOG0175|consen 228 RRAIYHATHRDAYSGGVVNLYHVKEDGWVKVS 259 (285)
T ss_pred HHHHHHHHhcccccCceEEEEEECCccceecC
Confidence 99999999999999999999999999987765
No 20
>PTZ00246 proteasome subunit alpha; Provisional
Probab=99.85 E-value=5.8e-21 Score=148.41 Aligned_cols=91 Identities=21% Similarity=0.230 Sum_probs=84.5
Q ss_pred cccccccc---cceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHHHhccc
Q psy7294 17 KTLALNSK---KWTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEAYSVLKQCVHHMKRRTV 93 (123)
Q Consensus 17 ~~~~~~~~---~~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~~mt~eEAi~L~~k~i~~a~~Rd~ 93 (123)
+.+||.+. .|||+ +.||+||++||+|++.+++++|+|+|+.+++++||+.|+++||+|||++|+++||..+..||+
T Consensus 126 ~~rP~~v~~li~G~D~-~~gp~Ly~~D~~Gs~~~~~~~a~G~gs~~~~~~Le~~~~~~ms~eeai~l~~~al~~~~~~d~ 204 (253)
T PTZ00246 126 GLRPFGVSFLFAGYDE-NLGYQLYHTDPSGNYSGWKATAIGQNNQTAQSILKQEWKEDLTLEQGLLLAAKVLTKSMDSTS 204 (253)
T ss_pred CcccCCEEEEEEEEeC-CCCcEEEEECCCCCEecceEEEECCCcHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhccC
Confidence 45676664 47896 568999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcEEEEEEcCCC
Q psy7294 94 LSYPKFTVKVLDRTG 108 (123)
Q Consensus 94 ~s~~~~~V~vI~kdG 108 (123)
.++++++|++|+++|
T Consensus 205 ~s~~~vev~ii~~~~ 219 (253)
T PTZ00246 205 PKADKIEVGILSHGE 219 (253)
T ss_pred CCCCcEEEEEEecCC
Confidence 999999999999986
No 21
>TIGR03691 20S_bact_alpha proteasome, alpha subunit, bacterial type. Members of this family are the alpha subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In most Actinobacteria (an exception is Propionibacterium acnes), the proteasome is accompanied by a system of tagging proteins for degradation with Pup.
Probab=99.84 E-value=8.8e-21 Score=146.22 Aligned_cols=98 Identities=15% Similarity=0.155 Sum_probs=85.6
Q ss_pred ccccccccc---ceeCCCCceEEEEECCCCceeeeC-eEEEcccHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHH--Hh
Q psy7294 17 KTLALNSKK---WTDCNTFGVTLYKGDPYGFMLEVP-YAYIGINGFLTASLVDKYYKPDLTVQEAYSVLKQCVHHM--KR 90 (123)
Q Consensus 17 ~~~~~~~~~---~~D~~~~gP~Ly~iD~~Gs~~~~~-~~a~G~Gs~~~~~~Ld~~y~~~mt~eEAi~L~~k~i~~a--~~ 90 (123)
+.+||-+.. |||+.+.||+||++||+|++.+++ ++|+|+|+.+++++||++|+++||.|||++|+++||.++ .+
T Consensus 114 ~~RP~gvs~Li~G~d~~~~gp~Ly~vDpsG~~~~~~~~~aiG~gs~~a~~~Lek~y~~~ms~eeai~la~~aL~~~~~~~ 193 (228)
T TIGR03691 114 QQKPYEVEICVAEVGETPDQDQLYRITFDGSIVDERGFVVMGGTTEPIATALKESYRDGLSLADALGLAVQALRAGGNGE 193 (228)
T ss_pred ccCcceEEEEEEEEcCCCCCCEEEEECCCCCceeccceEEECCChHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhccc
Confidence 457766643 678535689999999999999976 899999999999999999999999999999999999999 46
Q ss_pred cccccCCcEEEEEEcCCC----eEEeec
Q psy7294 91 RTVLSYPKFTVKVLDRTG----TVNVLQ 114 (123)
Q Consensus 91 Rd~~s~~~~~V~vI~kdG----~~~l~~ 114 (123)
||.+++++++|++|++++ .+.++.
T Consensus 194 r~~~~~~~iEv~ii~k~~~~~~f~~l~~ 221 (228)
T TIGR03691 194 KRELDAASLEVAVLDRSRPRRAFRRITG 221 (228)
T ss_pred cccCCccceEEEEEeCCCCccceEECCH
Confidence 888999999999999764 666553
No 22
>cd01906 proteasome_protease_HslV proteasome_protease_HslV. This group contains the eukaryotic proteosome alpha and beta subunits and the prokaryotic protease hslV subunit. Proteasomes are large multimeric self-compartmentalizing proteases, involved in the clearance of misfolded proteins, the breakdown of regulatory proteins, and the processing of proteins such as the preparation of peptides for immune presentation. Two main proteasomal types are distinguished by their different tertiary structures: the eukaryotic/archeal 20S proteasome and the prokaryotic proteasome-like heat shock protein encoded by heat shock locus V, hslV. The proteasome core particle is a highly conserved cylindrical structure made up of non-identical subunits that have their active sites on the inner walls of a large central cavity. The proteasome subunits of bacteria, archaea, and eukaryotes all share a conserved Ntn (N terminal nucleophile) hydrolase fold and a catalytic mechanism involving an N-terminal nucleo
Probab=99.84 E-value=9.5e-21 Score=138.66 Aligned_cols=101 Identities=25% Similarity=0.327 Sum_probs=92.1
Q ss_pred ccccchhhHHHhhhcc--ccccccc---ceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCCCCCCHHHH
Q psy7294 3 RQNSNSLTPILFMNKT--LALNSKK---WTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEA 77 (123)
Q Consensus 3 ~~~~~~~~~~~~~~~~--~~~~~~~---~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~~mt~eEA 77 (123)
+..+++|+.+++.++. .||.+.. |+|+ +.||+||.+||.|++.+++++|+|+|+.+++++||+.|+++||.+||
T Consensus 77 ~~l~~~l~~~~~~~~~~~~p~~~~~lv~G~d~-~~~~~Ly~id~~G~~~~~~~~a~G~g~~~~~~~L~~~~~~~~s~~ea 155 (182)
T cd01906 77 EALAKLLANLLYEYTQSLRPLGVSLLVAGVDE-EGGPQLYSVDPSGSYIEYKATAIGSGSQYALGILEKLYKPDMTLEEA 155 (182)
T ss_pred HHHHHHHHHHHHHhCCCccChheEEEEEEEeC-CCCcEEEEECCCCCEeeccEEEECCCcHHHHHHHHHHccCCCCHHHH
Confidence 3457788899988876 8887754 6785 57899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccccCCcEEEEEE
Q psy7294 78 YSVLKQCVHHMKRRTVLSYPKFTVKVL 104 (123)
Q Consensus 78 i~L~~k~i~~a~~Rd~~s~~~~~V~vI 104 (123)
++++++|++.+.+||+.++..++|.+|
T Consensus 156 ~~l~~~~l~~~~~~~~~~~~~~~i~ii 182 (182)
T cd01906 156 IELALKALKSALERDLYSGGNIEVAVI 182 (182)
T ss_pred HHHHHHHHHHHHcccCCCCCCEEEEEC
Confidence 999999999999999999999999975
No 23
>PF00227 Proteasome: Proteasome subunit; InterPro: IPR001353 ATP-dependent protease complexes are present in all three kingdoms of life, where they rid the cell of misfolded or damaged proteins and control the level of certain regulatory proteins. They include the proteasome in Eukaryotes, Archaea, and Actinomycetales and the HslVU (ClpQY, clpXP) complex in other eubacteria. Genes homologous to eubacterial HslV (ClpQ) and HslU (ClpY, clpX) have also been demonstrated in to be present in the genome of trypanosomatid protozoa []. The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). The prokaryotic ATP-dependent proteasome is coded for by the heat-shock locus VU (HslVU). It consists of HslV, the protease (MEROPS peptidase subfamily T1B), and HslU, IPR004491 from INTERPRO, the ATPase and chaperone belonging to the AAA/Clp/Hsp100 family. The crystal structure of Thermotoga maritima HslV has been determined to 2.1-A resolution. The structure of the dodecameric enzyme is well conserved compared to those from Escherichia coli and Haemophilus influenzae [, ]. This entry contains threonine peptidases and non-peptidase homologs belong to MEROPS peptidase family T1 (proteasome family, clan PB(T)). The family consists of the protease components of the archaeal and bacterial proteasomes and the alpha and beta subunits of the eukaryotic proteasome. ; GO: 0004298 threonine-type endopeptidase activity, 0051603 proteolysis involved in cellular protein catabolic process, 0005839 proteasome core complex; PDB: 3KRD_1 3H6F_M 2FHH_F 3HF9_F 2FHG_D 3HFA_B 3H6I_K 3MI0_A 3MFE_1 3MKA_F ....
Probab=99.84 E-value=1.4e-20 Score=138.54 Aligned_cols=98 Identities=24% Similarity=0.360 Sum_probs=87.5
Q ss_pred cchhhHHHhhhccccccccc---ceeCCCCceEEEEECCCCceeee-CeEEEcccHHHHHHHHHccCCCCCCHHHHHHHH
Q psy7294 6 SNSLTPILFMNKTLALNSKK---WTDCNTFGVTLYKGDPYGFMLEV-PYAYIGINGFLTASLVDKYYKPDLTVQEAYSVL 81 (123)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~---~~D~~~~gP~Ly~iD~~Gs~~~~-~~~a~G~Gs~~~~~~Ld~~y~~~mt~eEAi~L~ 81 (123)
+.++...++.++..||.+.. |+|+ .++|+||.+||.|++.++ ++.|+|+|+.+++++||+.|+++||.+||++++
T Consensus 89 ~~~~~~~~~~~~~~p~~~~~li~G~d~-~~~~~l~~vd~~G~~~~~~~~~aiG~g~~~~~~~l~~~~~~~~~~~ea~~~~ 167 (190)
T PF00227_consen 89 ASLIQNYTYRSGRRPYGVSLLIAGYDE-DGGPQLYSVDPSGSYIECKRFAAIGSGSQFAQPILEKLYKPDLSLEEAIELA 167 (190)
T ss_dssp HHHHHHHHHHTTTSTTSEEEEEEEEET-TTEEEEEEEETTSEEEEBSSEEEESTTHHHHHHHHHHHHTTTSSHHHHHHHH
T ss_pred HHHHhhhcccccccCccccceeeeecc-ccccceeeeccccccccccccccchhcchhhhHHHHhhccCCCCHHHHHHHH
Confidence 34455555667778877743 7895 667999999999999999 699999999999999999999999999999999
Q ss_pred HHHHHHHHhcccccCCcEEEEEE
Q psy7294 82 KQCVHHMKRRTVLSYPKFTVKVL 104 (123)
Q Consensus 82 ~k~i~~a~~Rd~~s~~~~~V~vI 104 (123)
++||+.+.+||+.++++++|+||
T Consensus 168 ~~~l~~~~~~d~~~~~~~~v~vi 190 (190)
T PF00227_consen 168 LKALKEAIDRDILSGDNIEVAVI 190 (190)
T ss_dssp HHHHHHHHHHBTTSTSEEEEEEE
T ss_pred HHHHHHHHhhCCccCCeEEEEEC
Confidence 99999999999999999999987
No 24
>PRK03996 proteasome subunit alpha; Provisional
Probab=99.84 E-value=2.3e-20 Score=143.91 Aligned_cols=105 Identities=18% Similarity=0.228 Sum_probs=89.7
Q ss_pred cchhhHHH--hhh--ccccccccc---ceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCCCCCCHHHHH
Q psy7294 6 SNSLTPIL--FMN--KTLALNSKK---WTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEAY 78 (123)
Q Consensus 6 ~~~~~~~~--~~~--~~~~~~~~~---~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~~mt~eEAi 78 (123)
+++|++++ |.+ ..+||.+.. ||| ..||+||++||.|++.+++++|+|+|+.+++++||+.|+++||.|||+
T Consensus 115 a~~ls~~~~~~~~~~~~rP~~~~~ilaG~d--~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~eeai 192 (241)
T PRK03996 115 TKKICDHKQQYTQHGGVRPFGVALLIAGVD--DGGPRLFETDPSGAYLEYKATAIGAGRDTVMEFLEKNYKEDLSLEEAI 192 (241)
T ss_pred HHHHHHHHHHhcCCCCccchheEEEEEEEe--CCcCEEEEECCCCCeecceEEEECCCcHHHHHHHHHhcccCCCHHHHH
Confidence 45677776 322 355776643 689 457999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccccCCcEEEEEEcCCC--eEEee
Q psy7294 79 SVLKQCVHHMKRRTVLSYPKFTVKVLDRTG--TVNVL 113 (123)
Q Consensus 79 ~L~~k~i~~a~~Rd~~s~~~~~V~vI~kdG--~~~l~ 113 (123)
+|+++|+..+.+| ..++++++|++|+++| .+.+.
T Consensus 193 ~l~~~al~~~~~~-~~~~~~i~i~ii~~~~~~~~~~~ 228 (241)
T PRK03996 193 ELALKALAKANEG-KLDPENVEIAYIDVETKKFRKLS 228 (241)
T ss_pred HHHHHHHHHHhcc-CCCCCcEEEEEEECCCCcEEECC
Confidence 9999999999886 5799999999999987 55543
No 25
>cd03755 proteasome_alpha_type_7 proteasome_alpha_type_7. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.84 E-value=1.7e-20 Score=141.79 Aligned_cols=96 Identities=15% Similarity=0.170 Sum_probs=85.7
Q ss_pred ccchhhHHH--hhh--cccccccc---cceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCCCCCCHHHH
Q psy7294 5 NSNSLTPIL--FMN--KTLALNSK---KWTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEA 77 (123)
Q Consensus 5 ~~~~~~~~~--~~~--~~~~~~~~---~~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~~mt~eEA 77 (123)
-+++||.++ |.+ +.+||.+. .|||+ +.||+||++||+|++.+++++|+|+|+.+++++||++|+++||.|||
T Consensus 105 la~~ls~~~~~y~~~~~~rP~~vs~ii~G~D~-~~~p~Ly~iD~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~ms~eea 183 (207)
T cd03755 105 ITRYIAGLQQRYTQSGGVRPFGISTLIVGFDP-DGTPRLYQTDPSGTYSAWKANAIGRNSKTVREFLEKNYKEEMTRDDT 183 (207)
T ss_pred HHHHHHHHHHHHhcccCcccceeEEEEEEEeC-CCCeEEEEECCCcCEEcceEEEECCCCHHHHHHHHhhccCCCCHHHH
Confidence 357888888 554 46688775 47896 56899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccccCCcEEEEEE
Q psy7294 78 YSVLKQCVHHMKRRTVLSYPKFTVKVL 104 (123)
Q Consensus 78 i~L~~k~i~~a~~Rd~~s~~~~~V~vI 104 (123)
++++++|+.++.+ .+++++||++|
T Consensus 184 i~l~~~~l~~~~~---~~~~~~e~~~~ 207 (207)
T cd03755 184 IKLAIKALLEVVQ---SGSKNIELAVM 207 (207)
T ss_pred HHHHHHHHHHHhC---CCCCeEEEEEC
Confidence 9999999999986 79999999985
No 26
>cd03752 proteasome_alpha_type_4 proteasome_alpha_type_4. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.83 E-value=2.8e-20 Score=141.10 Aligned_cols=98 Identities=24% Similarity=0.294 Sum_probs=85.2
Q ss_pred cchhhHHH--hh--hccccccccc---ceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCCCCCCHHHHH
Q psy7294 6 SNSLTPIL--FM--NKTLALNSKK---WTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEAY 78 (123)
Q Consensus 6 ~~~~~~~~--~~--~~~~~~~~~~---~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~~mt~eEAi 78 (123)
+++||.++ |. ...+||.+.. |||+ ..||+||++||+|++.+++++|+|+|+.+++++||+.|+++||+|||+
T Consensus 109 a~~ls~~~~~~t~~~~~RP~~v~~li~G~D~-~~g~~ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~y~~~ms~eea~ 187 (213)
T cd03752 109 VQRLCDIKQGYTQYGGLRPFGVSFLYAGWDK-HYGFQLYQSDPSGNYSGWKATAIGNNNQAAQSLLKQDYKDDMTLEEAL 187 (213)
T ss_pred HHHHHHHHHHHhcCCCcccceeEEEEEEEeC-CCCCEEEEECCCCCeeeeeEEEECCCcHHHHHHHHHhccCCCCHHHHH
Confidence 45566554 32 2445776643 6896 568999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccccCCcEEEEEE
Q psy7294 79 SVLKQCVHHMKRRTVLSYPKFTVKVL 104 (123)
Q Consensus 79 ~L~~k~i~~a~~Rd~~s~~~~~V~vI 104 (123)
+|+++|+..+.+||..++++++|++|
T Consensus 188 ~l~~~al~~~~~r~~~~~~~~ei~~~ 213 (213)
T cd03752 188 ALAVKVLSKTMDSTKLTSEKLEFATL 213 (213)
T ss_pred HHHHHHHHHHHhccCCCCCcEEEEEC
Confidence 99999999999999999999999875
No 27
>cd03756 proteasome_alpha_archeal proteasome_alpha_archeal. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.83 E-value=2.8e-20 Score=140.80 Aligned_cols=97 Identities=15% Similarity=0.182 Sum_probs=85.6
Q ss_pred cchhhHHHhh----hccccccccc---ceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCCCCCCHHHHH
Q psy7294 6 SNSLTPILFM----NKTLALNSKK---WTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEAY 78 (123)
Q Consensus 6 ~~~~~~~~~~----~~~~~~~~~~---~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~~mt~eEAi 78 (123)
+++|+.++.+ .+.+||.+.. ||| ..||+||++||.|++.+++++|+|+|+.+++++||+.|+++||.|||+
T Consensus 107 a~~ls~~~~~~~~~~~~rP~~v~~ll~G~D--~~~~~ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~m~~~ea~ 184 (211)
T cd03756 107 VKKICDLKQQYTQHGGVRPFGVALLIAGVD--DGGPRLFETDPSGAYNEYKATAIGSGRQAVTEFLEKEYKEDMSLEEAI 184 (211)
T ss_pred HHHHHHHHHHhcCCCCeechhEEEEEEEEe--CCCCEEEEECCCCCeeeeEEEEECCCCHHHHHHHHhhccCCCCHHHHH
Confidence 5677777632 2567877643 689 458999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccccCCcEEEEEEc
Q psy7294 79 SVLKQCVHHMKRRTVLSYPKFTVKVLD 105 (123)
Q Consensus 79 ~L~~k~i~~a~~Rd~~s~~~~~V~vI~ 105 (123)
+++++|+..+.+|+. ++++++|++|+
T Consensus 185 ~l~~~~l~~~~~~~~-~~~~~~v~ii~ 210 (211)
T cd03756 185 ELALKALYAALEENE-TPENVEIAYVT 210 (211)
T ss_pred HHHHHHHHHHhcccC-CCCcEEEEEEe
Confidence 999999999999885 99999999986
No 28
>cd01911 proteasome_alpha proteasome alpha subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 different alpha and 10 different beta proteasome subunit genes while archaea have one of each.
Probab=99.83 E-value=2.5e-20 Score=140.75 Aligned_cols=98 Identities=18% Similarity=0.250 Sum_probs=85.9
Q ss_pred ccchhhHHH--hhh--ccccccccc---ceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCCCCCCHHHH
Q psy7294 5 NSNSLTPIL--FMN--KTLALNSKK---WTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEA 77 (123)
Q Consensus 5 ~~~~~~~~~--~~~--~~~~~~~~~---~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~~mt~eEA 77 (123)
-+++||.++ |.+ ...||.+.. |+|+ +.||+||.+||.|++.+.+++++|+|+.+++++||+.|+++||.|||
T Consensus 105 la~~ls~~~~~~~~~~~~rP~~v~~iv~G~d~-~~~~~Ly~iD~~G~~~~~~~~a~G~g~~~~~~~L~~~~~~~ms~~ea 183 (209)
T cd01911 105 LVKRIADLAQVYTQYGGVRPFGVSLLIAGYDE-EGGPQLYQTDPSGTYFGYKATAIGKGSQEAKTFLEKRYKKDLTLEEA 183 (209)
T ss_pred HHHHHHHHHHHHhcccCccChhheEEEEEEcC-CCCcEEEEECCCCCeeeeeEEEeCCCcHHHHHHHHHhcccCCCHHHH
Confidence 456778877 332 344776643 6796 56899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccccCCcEEEEEE
Q psy7294 78 YSVLKQCVHHMKRRTVLSYPKFTVKVL 104 (123)
Q Consensus 78 i~L~~k~i~~a~~Rd~~s~~~~~V~vI 104 (123)
++++++|+.++..||+ ++++++|+++
T Consensus 184 ~~l~~~~l~~~~~~d~-~~~~~~i~i~ 209 (209)
T cd01911 184 IKLALKALKEVLEEDK-KAKNIEIAVV 209 (209)
T ss_pred HHHHHHHHHHHHhccC-CCCcEEEEEC
Confidence 9999999999999998 9999999875
No 29
>cd03749 proteasome_alpha_type_1 proteasome_alpha_type_1. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.81 E-value=1.5e-19 Score=137.20 Aligned_cols=98 Identities=11% Similarity=0.135 Sum_probs=85.0
Q ss_pred cchhhHHHhh----hccccccccc---ceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCC--CCCCHHH
Q psy7294 6 SNSLTPILFM----NKTLALNSKK---WTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYK--PDLTVQE 76 (123)
Q Consensus 6 ~~~~~~~~~~----~~~~~~~~~~---~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~--~~mt~eE 76 (123)
++.+|.++.. .+.+||-+.. |||+ .||+||++||+|++.+++++|+|+|+.+++++||++|+ ++||+||
T Consensus 104 a~~is~~~~~~t~~~~~rP~~v~~ii~G~D~--~gp~Ly~~Dp~G~~~~~~~~a~G~g~~~a~~~Le~~~~~~~~ms~ee 181 (211)
T cd03749 104 VSKVAEKAQINTQRYGRRPYGVGLLIAGYDE--SGPHLFQTCPSGNYFEYKATSIGARSQSARTYLERHFEEFEDCSLEE 181 (211)
T ss_pred HHHHHHHHHHHhcccCCCCceEEEEEEEEcC--CCCeEEEECCCcCEeeeeEEEECCCcHHHHHHHHHhhccccCCCHHH
Confidence 3556665532 2455777743 7894 58999999999999999999999999999999999999 6999999
Q ss_pred HHHHHHHHHHHHHhccc-ccCCcEEEEEEc
Q psy7294 77 AYSVLKQCVHHMKRRTV-LSYPKFTVKVLD 105 (123)
Q Consensus 77 Ai~L~~k~i~~a~~Rd~-~s~~~~~V~vI~ 105 (123)
|++++.++++.+..+|. .++++++|++|+
T Consensus 182 ~i~~~~~~l~~~~~~~~~~~~~~iei~ii~ 211 (211)
T cd03749 182 LIKHALRALRETLPGEQELTIKNVSIAIVG 211 (211)
T ss_pred HHHHHHHHHHHHhccCCCCCCCcEEEEEEC
Confidence 99999999999999988 999999999984
No 30
>cd03754 proteasome_alpha_type_6 proteasome_alpha_type_6. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.81 E-value=1.2e-19 Score=138.18 Aligned_cols=98 Identities=18% Similarity=0.307 Sum_probs=85.2
Q ss_pred ccchhhHH--Hhhh--ccccccccc---ceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCCCC--C--C
Q psy7294 5 NSNSLTPI--LFMN--KTLALNSKK---WTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPD--L--T 73 (123)
Q Consensus 5 ~~~~~~~~--~~~~--~~~~~~~~~---~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~~--m--t 73 (123)
-++.+|++ +|.. ..+||.+.. |||+ ++||+||++||+|++.+++++|+|+|+.+++++||+.|+++ | |
T Consensus 107 la~~ls~~~q~yt~~~~~RP~~v~~ii~G~D~-~~gp~Ly~~Dp~Gs~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~~~s 185 (215)
T cd03754 107 LAKRIADINQVYTQHAYMRPLGVSMILIGIDE-ELGPQLYKCDPAGYFAGYKATAAGVKEQEATNFLEKKLKKKPDLIES 185 (215)
T ss_pred HHHHHHHHHHHHhCCCCCcCCeeEEEEEEEeC-CCCeEEEEEcCCccEEeEEEEEECCCcHHHHHHHHHHhccccccCCC
Confidence 45677876 4543 345877754 7896 56899999999999999999999999999999999999995 7 9
Q ss_pred HHHHHHHHHHHHHHHHhcccccCCcEEEEEE
Q psy7294 74 VQEAYSVLKQCVHHMKRRTVLSYPKFTVKVL 104 (123)
Q Consensus 74 ~eEAi~L~~k~i~~a~~Rd~~s~~~~~V~vI 104 (123)
.|||++++++||.++.+|| +++++++|++|
T Consensus 186 ~eeai~l~~~al~~~~~rd-~~~~~~ei~~~ 215 (215)
T cd03754 186 YEETVELAISCLQTVLSTD-FKATEIEVGVV 215 (215)
T ss_pred HHHHHHHHHHHHHHHhccc-CCCCcEEEEEC
Confidence 9999999999999999999 56999999985
No 31
>cd03751 proteasome_alpha_type_3 proteasome_alpha_type_3. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.81 E-value=1.4e-19 Score=137.77 Aligned_cols=97 Identities=13% Similarity=0.078 Sum_probs=83.7
Q ss_pred cchhhHHHhhh----ccccccccc---ceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCCCCCCHHHHH
Q psy7294 6 SNSLTPILFMN----KTLALNSKK---WTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEAY 78 (123)
Q Consensus 6 ~~~~~~~~~~~----~~~~~~~~~---~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~~mt~eEAi 78 (123)
+++||+++... ..+||.+.. ||| +.||+||++||+|++.+++++|+|+|+.+++++||+.|+++||+|||+
T Consensus 109 a~~ls~~~~~~t~~~~~rP~~vs~li~G~D--~~gp~Ly~~D~~Gs~~~~~~~a~G~g~~~a~~~Lek~~~~dms~eeai 186 (212)
T cd03751 109 ADRVAMYMHAYTLYSSVRPFGCSVLLGGYD--SDGPQLYMIEPSGVSYGYFGCAIGKGKQAAKTELEKLKFSELTCREAV 186 (212)
T ss_pred HHHHHHHHHHhccCCCcCCceEEEEEEEEe--CCcCEEEEECCCCCEEeeEEEEECCCCHHHHHHHHHhccCCCCHHHHH
Confidence 56677765331 345766643 789 458999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccccCCcEEEEEE
Q psy7294 79 SVLKQCVHHMKRRTVLSYPKFTVKVL 104 (123)
Q Consensus 79 ~L~~k~i~~a~~Rd~~s~~~~~V~vI 104 (123)
+++.+++..+.+-+..+..+++|+++
T Consensus 187 ~l~~~~L~~~~~~~~~~~~~iei~~~ 212 (212)
T cd03751 187 KEAAKIIYIVHDEIKDKAFELELSWV 212 (212)
T ss_pred HHHHHHHHHHhhccCCCCccEEEEEC
Confidence 99999999999877788999999875
No 32
>cd03753 proteasome_alpha_type_5 proteasome_alpha_type_5. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.81 E-value=1.7e-19 Score=136.65 Aligned_cols=96 Identities=16% Similarity=0.229 Sum_probs=83.7
Q ss_pred cchhhHHHhh--hc-------cccccccc---ceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCCCCCC
Q psy7294 6 SNSLTPILFM--NK-------TLALNSKK---WTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLT 73 (123)
Q Consensus 6 ~~~~~~~~~~--~~-------~~~~~~~~---~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~~mt 73 (123)
+++|+.++++ ++ .+||.+.. ||| ..||+||++||.|++.+++++|+|+|+++++++|++.|+++||
T Consensus 106 ~~~ls~~~~~~~~~~~~~~~~~rP~~v~~ii~G~D--~~gp~Ly~vd~~G~~~~~~~~a~G~~~~~~~~~L~~~~~~~ls 183 (213)
T cd03753 106 TQAVSDLALQFGEGDDGKKAMSRPFGVALLIAGVD--ENGPQLFHTDPSGTFTRCDAKAIGSGSEGAQSSLQEKYHKDMT 183 (213)
T ss_pred HHHHHHHHHHHhCcccccccccccceEEEEEEEEc--CCCCEEEEECCCCCeecccEEEECCCcHHHHHHHHhhccCCCC
Confidence 4567787754 32 36776633 679 4689999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcccccCCcEEEEEE
Q psy7294 74 VQEAYSVLKQCVHHMKRRTVLSYPKFTVKVL 104 (123)
Q Consensus 74 ~eEAi~L~~k~i~~a~~Rd~~s~~~~~V~vI 104 (123)
.|||++|+.+||+.+.+|+ .++++++|++|
T Consensus 184 ~eeai~l~~~~l~~~~~~~-~~~~~~ei~~~ 213 (213)
T cd03753 184 LEEAEKLALSILKQVMEEK-LNSTNVELATV 213 (213)
T ss_pred HHHHHHHHHHHHHHHhccc-CCCCcEEEEEC
Confidence 9999999999999998876 99999999985
No 33
>KOG0174|consensus
Probab=99.80 E-value=8.6e-20 Score=137.38 Aligned_cols=107 Identities=19% Similarity=0.281 Sum_probs=95.7
Q ss_pred cccchhhHHHhhhcc-cc--cccccceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCCCCCCHHHHHHH
Q psy7294 4 QNSNSLTPILFMNKT-LA--LNSKKWTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEAYSV 80 (123)
Q Consensus 4 ~~~~~~~~~~~~~~~-~~--~~~~~~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~~mt~eEAi~L 80 (123)
++++...+|.|.+|. |- +.+.+| |+ ..|+++|.+...|++.+.+++.-||||.|+++++|.+|+|+||+||++.+
T Consensus 97 ~aA~l~r~~~Y~~re~L~AgliVAGw-D~-~~gGqVY~iplGG~l~rq~~aIgGSGStfIYGf~D~~~r~nMt~EE~~~f 174 (224)
T KOG0174|consen 97 TAASLFREICYNYREMLSAGLIVAGW-DE-KEGGQVYSIPLGGSLTRQPFAIGGSGSTFIYGFCDANWRPNMTLEECVRF 174 (224)
T ss_pred HHHHHHHHHHHhCHHhhhcceEEeec-cc-ccCceEEEeecCceEeecceeeccCCceeeeeeehhhcCCCCCHHHHHHH
Confidence 456677788888775 22 566666 97 77889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccccCCcEEEEEEcCCCeEEe
Q psy7294 81 LKQCVHHMKRRTVLSYPKFTVKVLDRTGTVNV 112 (123)
Q Consensus 81 ~~k~i~~a~~Rd~~s~~~~~V~vI~kdG~~~l 112 (123)
+++|+..|++||..+|..+++.+|+++|++..
T Consensus 175 vk~Av~lAi~rDGsSGGviR~~~I~~~Gver~ 206 (224)
T KOG0174|consen 175 VKNAVSLAIERDGSSGGVIRLVIINKAGVERR 206 (224)
T ss_pred HHHHHHHHHhccCCCCCEEEEEEEccCCceEE
Confidence 99999999999999999999999999997654
No 34
>KOG0173|consensus
Probab=99.77 E-value=2.1e-18 Score=133.79 Aligned_cols=106 Identities=22% Similarity=0.248 Sum_probs=93.5
Q ss_pred hhhHHHh--hhcccccccccceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCCCCCCHHHHHHHHHHHH
Q psy7294 8 SLTPILF--MNKTLALNSKKWTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEAYSVLKQCV 85 (123)
Q Consensus 8 ~~~~~~~--~~~~~~~~~~~~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~~mt~eEAi~L~~k~i 85 (123)
||-.+|| |-..=++..-+|+| ..||+||.+-|.||....+|++.|||+..++++||..|+||||+|||++|+.+||
T Consensus 119 mlkQ~LFrYqG~IgA~LiiGGvD--~TGpHLy~i~phGStd~~Pf~alGSGslaAmsvlEsr~k~dlt~eea~~Lv~eAi 196 (271)
T KOG0173|consen 119 MLKQHLFRYQGHIGAALILGGVD--PTGPHLYSIHPHGSTDKLPFTALGSGSLAAMSVLESRWKPDLTKEEAIKLVCEAI 196 (271)
T ss_pred HHHHHHHHhcCcccceeEEcccc--CCCCceEEEcCCCCcCccceeeeccchHHHHHHHHHhcCcccCHHHHHHHHHHHH
Confidence 4445553 33444567788999 5799999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcccccCCcEEEEEEcCCCeEEeecc
Q psy7294 86 HHMKRRTVLSYPKFTVKVLDRTGTVNVLQD 115 (123)
Q Consensus 86 ~~a~~Rd~~s~~~~~V~vI~kdG~~~l~~~ 115 (123)
.+-+..|.-||+|+.++||++.+++.++..
T Consensus 197 ~AGi~nDLgSGsnvdlcVI~~~~~~~lr~~ 226 (271)
T KOG0173|consen 197 AAGIFNDLGSGSNVDLCVITKKGVEYLRNY 226 (271)
T ss_pred HhhhccccCCCCceeEEEEeCCCccccccC
Confidence 999999999999999999998887776543
No 35
>PRK05456 ATP-dependent protease subunit HslV; Provisional
Probab=99.72 E-value=2.3e-17 Score=122.65 Aligned_cols=67 Identities=13% Similarity=0.106 Sum_probs=64.4
Q ss_pred eEEEEECCCCceeee--CeEEEcccHHHHHHHHHccCC-CCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEE
Q psy7294 34 VTLYKGDPYGFMLEV--PYAYIGINGFLTASLVDKYYK-PDLTVQEAYSVLKQCVHHMKRRTVLSYPKFTVKV 103 (123)
Q Consensus 34 P~Ly~iD~~Gs~~~~--~~~a~G~Gs~~~~~~Ld~~y~-~~mt~eEAi~L~~k~i~~a~~Rd~~s~~~~~V~v 103 (123)
|+||++||.|++.+. ++.|+||||.+++++||++|+ |+| ||++|+++||+++.+||+.++++|+|-.
T Consensus 102 ~~ly~id~~G~~~~~~~~~~a~GSGs~~a~g~ld~~y~~~~m---eA~~la~kai~~A~~Rd~~sg~~i~v~~ 171 (172)
T PRK05456 102 EHSLIISGNGDVIEPEDGIIAIGSGGNYALAAARALLENTDL---SAEEIAEKALKIAADICIYTNHNITIEE 171 (172)
T ss_pred CcEEEECCCCcEeccCCCeEEEecCHHHHHHHHHHhhhcCCC---CHHHHHHHHHHHHHHhCeeCCCcEEEEE
Confidence 799999999999777 799999999999999999999 999 9999999999999999999999999865
No 36
>KOG0185|consensus
Probab=99.71 E-value=2.3e-17 Score=127.08 Aligned_cols=107 Identities=22% Similarity=0.284 Sum_probs=94.7
Q ss_pred cchhhHHHhhhccc--ccc-c--ccceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCC---CCCCHHHH
Q psy7294 6 SNSLTPILFMNKTL--ALN-S--KKWTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYK---PDLTVQEA 77 (123)
Q Consensus 6 ~~~~~~~~~~~~~~--~~~-~--~~~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~---~~mt~eEA 77 (123)
.+||+-+||.||.- ||. + -+|+|. .+.|.|.++|..|..++.+.+|+|+|++++.|+|++.|+ ++++.|||
T Consensus 122 h~yltrvlY~rRsKmnPlwntlvVgGv~~-~g~~~lg~V~~~G~~Y~~~~vATGfg~hLa~P~lR~~~~~k~~~~s~eeA 200 (256)
T KOG0185|consen 122 HSYLTRVLYARRSKMNPLWNTLVVGGVDN-TGEPFLGYVDLLGVAYESPVVATGFGAHLALPLLRDEWEKKGEDLSREEA 200 (256)
T ss_pred HHHHHHHHHHhhhccCchhhheeEeeecC-CCCeeEEEEeeccccccCchhhhhhHHHhhhHHHHHhhhccchhhHHHHH
Confidence 36899999986543 332 2 457885 567999999999999999999999999999999999997 57999999
Q ss_pred HHHHHHHHHHHHhcccccCCcEEEEEEcCCCeEEee
Q psy7294 78 YSVLKQCVHHMKRRTVLSYPKFTVKVLDRTGTVNVL 113 (123)
Q Consensus 78 i~L~~k~i~~a~~Rd~~s~~~~~V~vI~kdG~~~l~ 113 (123)
.+|+.+||+.+.+||+.+.++|+|++||++|++...
T Consensus 201 ~~li~~cMrVL~YRD~ra~n~fqva~v~~eGv~i~~ 236 (256)
T KOG0185|consen 201 EALIEKCMRVLYYRDARASNEFQVATVDEEGVTISK 236 (256)
T ss_pred HHHHHHHHHHHhccccccccceEEEEEcccceEecC
Confidence 999999999999999999999999999999986654
No 37
>KOG0176|consensus
Probab=99.69 E-value=1e-16 Score=121.26 Aligned_cols=85 Identities=24% Similarity=0.262 Sum_probs=78.7
Q ss_pred ceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEc
Q psy7294 26 WTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEAYSVLKQCVHHMKRRTVLSYPKFTVKVLD 105 (123)
Q Consensus 26 ~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~~mt~eEAi~L~~k~i~~a~~Rd~~s~~~~~V~vI~ 105 (123)
|+| ..||+||..||+|++.++++.|+|+||.-+.+.|+++|+++||++||+.++++.++.+++. .++.+|++|.+|+
T Consensus 145 G~D--~~gpqL~h~dPSGtf~~~~AKAIGSgsEga~~~L~~e~~~~ltL~ea~~~~L~iLkqVMee-Kl~~~Nvev~~vt 221 (241)
T KOG0176|consen 145 GHD--ETGPQLYHLDPSGTFIRYKAKAIGSGSEGAESSLQEEYHKDLTLKEAEKIVLKILKQVMEE-KLNSNNVEVAVVT 221 (241)
T ss_pred ecc--CCCceEEEeCCCCceEEecceeccccchHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHH-hcCccceEEEEEc
Confidence 678 6799999999999999999999999999999999999999999999999999999999985 5999999999999
Q ss_pred CCC-eEEee
Q psy7294 106 RTG-TVNVL 113 (123)
Q Consensus 106 kdG-~~~l~ 113 (123)
++| .+...
T Consensus 222 ~e~~f~~~t 230 (241)
T KOG0176|consen 222 PEGEFHIYT 230 (241)
T ss_pred ccCceEecC
Confidence 984 55543
No 38
>cd01913 protease_HslV Protease HslV and the ATPase/chaperone HslU are part of an ATP-dependent proteolytic system that is the prokaryotic homolog of the proteasome. HslV is a dimer of hexamers (a dodecamer) that forms a central proteolytic chamber with active sites on the interior walls of the cavity. HslV shares significant sequence and structural similarity with the proteasomal beta-subunit and both are members of the Ntn-family of hydrolases. HslV has a nucleophilic threonine residue at its N-terminus that is exposed after processing of the propeptide and is directly involved in active site catalysis.
Probab=99.64 E-value=1e-15 Score=113.90 Aligned_cols=89 Identities=13% Similarity=0.036 Sum_probs=74.9
Q ss_pred hhHHHhhhcccccc-cccceeCCCCceEEEEECCCCceeeeC--eEEEcccHHHHHHHHHccCCCC-CCHHHHHHHHHHH
Q psy7294 9 LTPILFMNKTLALN-SKKWTDCNTFGVTLYKGDPYGFMLEVP--YAYIGINGFLTASLVDKYYKPD-LTVQEAYSVLKQC 84 (123)
Q Consensus 9 ~~~~~~~~~~~~~~-~~~~~D~~~~gP~Ly~iD~~Gs~~~~~--~~a~G~Gs~~~~~~Ld~~y~~~-mt~eEAi~L~~k~ 84 (123)
|+..++..|++|+. +..... +.|+||.+||.|++.+.+ +.++||||.+++++||.+|+++ || +.+|+.+|
T Consensus 78 l~~~l~~~~~~~~l~a~~iv~---~~~~ly~id~~G~~ie~~~~~~a~GSGS~ya~g~ld~~yk~~~ms---~~~la~~A 151 (171)
T cd01913 78 LAKDWRTDRYLRRLEAMLIVA---DKEHTLLISGNGDVIEPDDGIAAIGSGGNYALAAARALLDHTDLS---AEEIARKA 151 (171)
T ss_pred HHHHHHhccCcCceEEEEEEe---CCCcEEEECCCCCEeccCCCeEEEeCCHHHHHHHHHHhhccCCCC---HHHHHHHH
Confidence 34555566888765 444433 146999999999999995 9999999999999999999995 99 55999999
Q ss_pred HHHHHhcccccCCcEEEEE
Q psy7294 85 VHHMKRRTVLSYPKFTVKV 103 (123)
Q Consensus 85 i~~a~~Rd~~s~~~~~V~v 103 (123)
|+.|.+||+.++++|.|-.
T Consensus 152 v~~A~~rd~~tg~~i~~~~ 170 (171)
T cd01913 152 LKIAADICIYTNHNITVEE 170 (171)
T ss_pred HHHHHhhCcccCCCEEEEe
Confidence 9999999999999999865
No 39
>TIGR03692 ATP_dep_HslV ATP-dependent protease HslVU, peptidase subunit. The ATP-dependent protease HslVU, a complex of hexameric HslU active as a protein-unfolding ATPase and dodecameric HslV, the catalytic threonine protease.
Probab=99.61 E-value=2.8e-15 Score=111.58 Aligned_cols=68 Identities=16% Similarity=0.139 Sum_probs=63.4
Q ss_pred ceEEEEECCCCceeee--CeEEEcccHHHHHHHHHccC-CCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEE
Q psy7294 33 GVTLYKGDPYGFMLEV--PYAYIGINGFLTASLVDKYY-KPDLTVQEAYSVLKQCVHHMKRRTVLSYPKFTVKV 103 (123)
Q Consensus 33 gP~Ly~iD~~Gs~~~~--~~~a~G~Gs~~~~~~Ld~~y-~~~mt~eEAi~L~~k~i~~a~~Rd~~s~~~~~V~v 103 (123)
.|+||.+||.|++.+. ++.++||||.+++++||.+| +++|+ |++|+.+|++.|.+||+.++++|.|-.
T Consensus 100 ~~~ly~i~~~G~~ie~~~~~~a~GSGS~~a~g~ld~~y~~~~~s---a~~la~~Av~~A~~rd~~sg~~i~v~~ 170 (171)
T TIGR03692 100 KETSLLISGTGDVIEPEDGIAAIGSGGNYALAAARALLRNTDLS---AEEIAREALKIAADICIYTNHNITIEE 170 (171)
T ss_pred CCCEEEEcCCCcEeccCCCeEEEeCCHHHHHHHHHHhhhcCCCC---HHHHHHHHHHHHHhhCccCCCCEEEEe
Confidence 3699999999999996 69999999999999999999 57787 999999999999999999999999864
No 40
>KOG0181|consensus
Probab=99.53 E-value=2.4e-14 Score=108.25 Aligned_cols=86 Identities=19% Similarity=0.213 Sum_probs=80.0
Q ss_pred ceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEc
Q psy7294 26 WTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEAYSVLKQCVHHMKRRTVLSYPKFTVKVLD 105 (123)
Q Consensus 26 ~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~~mt~eEAi~L~~k~i~~a~~Rd~~s~~~~~V~vI~ 105 (123)
|+| .++|.||++||+|+++.|+++|+|-+..-+..|||+.|+++|.+++|++.+.-.+++..+.. .+.++++|+|+.
T Consensus 138 G~~--~~~p~LyQvdPSGsyf~wkatA~Gkn~v~aktFlEkR~~edleldd~ihtailtlkE~fege-~~~~nieigv~~ 214 (233)
T KOG0181|consen 138 GWD--EGGPLLYQVDPSGSYFAWKATAMGKNYVNAKTFLEKRYNEDLELDDAIHTAILTLKESFEGE-MTAKNIEIGVCG 214 (233)
T ss_pred ecC--CCceeEEEECCccceeehhhhhhccCcchHHHHHHHHhccccccchHHHHHHHHHHHHhccc-cccCceEEEEec
Confidence 457 56899999999999999999999999999999999999999999999999999999998864 899999999999
Q ss_pred CCCeEEeec
Q psy7294 106 RTGTVNVLQ 114 (123)
Q Consensus 106 kdG~~~l~~ 114 (123)
.++++.+..
T Consensus 215 ~~~F~~lt~ 223 (233)
T KOG0181|consen 215 ENGFRRLTP 223 (233)
T ss_pred CCceeecCH
Confidence 999988864
No 41
>KOG0183|consensus
Probab=99.50 E-value=5.6e-14 Score=107.46 Aligned_cols=94 Identities=17% Similarity=0.177 Sum_probs=81.5
Q ss_pred ccccccc-ccceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCCCC--CCHHHHHHHHHHHHHHHHhccc
Q psy7294 17 KTLALNS-KKWTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPD--LTVQEAYSVLKQCVHHMKRRTV 93 (123)
Q Consensus 17 ~~~~~~~-~~~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~~--mt~eEAi~L~~k~i~~a~~Rd~ 93 (123)
|-+..++ -+|||+ ++-|.||++||+|.+++|++.|+|.+|..+..+||++|.+. .|..|+++|+.+++.++..
T Consensus 126 RPFGvs~Li~GfD~-~g~p~lyqtePsG~f~ewka~aiGr~sk~VrEflEK~y~e~~~~~~~~~ikL~ir~LleVvq--- 201 (249)
T KOG0183|consen 126 RPFGVSTLIGGFDP-DGTPRLYQTEPSGIFSEWKANAIGRSSKTVREFLEKNYKEEAIATEGETIKLAIRALLEVVQ--- 201 (249)
T ss_pred ccccceEEEEeeCC-CCCeeeEeeCCCcchhhhhccccccccHHHHHHHHHhcccccccccccHHHHHHHHHHHHhh---
Confidence 3333444 458998 66799999999999999999999999999999999999877 8899999999999998876
Q ss_pred ccCCcEEEEEEcCCC-eEEeec
Q psy7294 94 LSYPKFTVKVLDRTG-TVNVLQ 114 (123)
Q Consensus 94 ~s~~~~~V~vI~kdG-~~~l~~ 114 (123)
.++.|++++|+++++ .+.++.
T Consensus 202 s~~~nie~aVm~~~~~~~~l~~ 223 (249)
T KOG0183|consen 202 SGGKNIEVAVMKRRKDLKMLES 223 (249)
T ss_pred cCCCeeEEEEEecCCceeecCH
Confidence 789999999999887 776653
No 42
>KOG0180|consensus
Probab=99.45 E-value=4.2e-13 Score=99.87 Aligned_cols=105 Identities=13% Similarity=0.151 Sum_probs=97.0
Q ss_pred cchhhHHHhhhcccccccc---cceeCCCCceEEEEECCCCceee-eCeEEEcccHHHHHHHHHccCCCCCCHHHHHHHH
Q psy7294 6 SNSLTPILFMNKTLALNSK---KWTDCNTFGVTLYKGDPYGFMLE-VPYAYIGINGFLTASLVDKYYKPDLTVQEAYSVL 81 (123)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~---~~~D~~~~gP~Ly~iD~~Gs~~~-~~~~a~G~Gs~~~~~~Ld~~y~~~mt~eEAi~L~ 81 (123)
|+|.|++||+.|+=||-++ .|.|+ +++|++...|..|+... .++++.|.++...++..|..|+|||..||-.+.+
T Consensus 88 s~mvS~~lYekRfgpYf~~PvVAGl~~-~~kPfIc~mD~IGc~~~~~DFVvsGTa~e~L~GmCE~ly~pnmepd~LFeti 166 (204)
T KOG0180|consen 88 SSMVSSLLYEKRFGPYFTEPVVAGLDD-DNKPFICGMDLIGCIDAPKDFVVSGTASEQLYGMCEALYEPNMEPDELFETI 166 (204)
T ss_pred HHHHHHHHHHhhcCCcccceeEeccCC-CCCeeEeecccccCcCccCCeEEecchHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 6799999999999999885 37787 88999999999998764 5599999999999999999999999999999999
Q ss_pred HHHHHHHHhcccccCCcEEEEEEcCCCeEE
Q psy7294 82 KQCVHHMKRRTVLSYPKFTVKVLDRTGTVN 111 (123)
Q Consensus 82 ~k~i~~a~~Rd~~s~~~~~V~vI~kdG~~~ 111 (123)
-+|+..+..||++||=+..|.||+||.+.+
T Consensus 167 sQa~Lna~DRDalSGwGa~vyiI~kdkv~~ 196 (204)
T KOG0180|consen 167 SQALLNAVDRDALSGWGAVVYIITKDKVTK 196 (204)
T ss_pred HHHHHhHhhhhhhccCCeEEEEEccchhhh
Confidence 999999999999999999999999998644
No 43
>KOG0178|consensus
Probab=99.38 E-value=1.6e-12 Score=99.38 Aligned_cols=92 Identities=24% Similarity=0.281 Sum_probs=82.2
Q ss_pred ceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCCCCCC-HHHHHHHHHHHHHHHHhcccccCCcEEEEEE
Q psy7294 26 WTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLT-VQEAYSVLKQCVHHMKRRTVLSYPKFTVKVL 104 (123)
Q Consensus 26 ~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~~mt-~eEAi~L~~k~i~~a~~Rd~~s~~~~~V~vI 104 (123)
|||. ..|-+||+.||+|++-.|++.++|..+..+++.|.+.|+++.+ .+||.+++.+.+.-...+..++.+.+||+.|
T Consensus 138 Gwd~-~~gyqLy~SdPSGny~gWka~ciG~N~~Aa~s~Lkqdykdd~~~~~eA~~laikvL~kt~d~~~lt~eklEia~~ 216 (249)
T KOG0178|consen 138 GWDD-RYGYQLYQSDPSGNYGGWKATCIGANSGAAQSMLKQDYKDDENDLEEAKALAIKVLSKTLDSGSLTAEKLEIATI 216 (249)
T ss_pred ceec-CcceEEEecCCCCCccccceeeeccchHHHHHHHHhhhccccccHHHHHHHHHHHHHhhcccCCCChhheEEEEE
Confidence 4585 6789999999999999999999999999999999999998865 9999999999999999999999999999999
Q ss_pred cCCCeEEeeccccc
Q psy7294 105 DRTGTVNVLQDLKY 118 (123)
Q Consensus 105 ~kdG~~~l~~~~k~ 118 (123)
++++.+..-.++|.
T Consensus 217 ~k~~~k~v~~i~~~ 230 (249)
T KOG0178|consen 217 TKDCNKTVLKILKK 230 (249)
T ss_pred EecCCceEEEecCH
Confidence 99976654445544
No 44
>KOG0182|consensus
Probab=99.22 E-value=6.1e-11 Score=90.79 Aligned_cols=86 Identities=21% Similarity=0.256 Sum_probs=78.7
Q ss_pred ceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCCCC--CCHHHHHHHHHHHHHHHHhcccccCCcEEEEE
Q psy7294 26 WTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPD--LTVQEAYSVLKQCVHHMKRRTVLSYPKFTVKV 103 (123)
Q Consensus 26 ~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~~--mt~eEAi~L~~k~i~~a~~Rd~~s~~~~~V~v 103 (123)
+||+ ..||.+|.+||.|-+...++++.|--..-+.++||+.|+++ +|.+|+++++..|+..+..-| +..+.+||++
T Consensus 142 ~~D~-E~gP~vYk~DpAGyy~g~kAtaaG~Kq~e~tsfLEKk~Kk~~~~t~~e~ve~ai~al~~sl~~D-fk~se~EVgv 219 (246)
T KOG0182|consen 142 GVDE-ERGPSVYKTDPAGYYYGFKATAAGVKQQEATSFLEKKYKKDIDLTFEETVETAISALQSSLGID-FKSSELEVGV 219 (246)
T ss_pred Eecc-ccCcceEeecCccccccceeeecccchhhHHHHHHHhhccCccchHHHHHHHHHHHHHHHHhcc-cCCcceEEEE
Confidence 6896 77899999999999999999999999999999999999987 889999999999999998766 7889999999
Q ss_pred EcCCC--eEEee
Q psy7294 104 LDRTG--TVNVL 113 (123)
Q Consensus 104 I~kdG--~~~l~ 113 (123)
++++. .+.|+
T Consensus 220 v~~~~p~f~~Ls 231 (246)
T KOG0182|consen 220 VTVDNPEFRILS 231 (246)
T ss_pred EEcCCcceeecc
Confidence 99875 66665
No 45
>cd01901 Ntn_hydrolase The Ntn hydrolases (N-terminal nucleophile) are a diverse superfamily of of enzymes that are activated autocatalytically via an N-terminally lcated nucleophilic amino acid. N-terminal nucleophile (NTN-) hydrolase superfamily, which contains a four-layered alpha, beta, beta, alpha core structure. This family of hydrolases includes penicillin acylase, the 20S proteasome alpha and beta subunits, and glutamate synthase. The mechanism of activation of these proteins is conserved, although they differ in their substrate specificities. All known members catalyze the hydrolysis of amide bonds in either proteins or small molecules, and each one of them is synthesized as a preprotein. For each, an autocatalytic endoproteolytic process generates a new N-terminal residue. This mature N-terminal residue is central to catalysis and acts as both a polarizing base and a nucleophile during the reaction. The N-terminal amino group acts as the proton acceptor and activates either t
Probab=99.19 E-value=1e-10 Score=82.04 Aligned_cols=79 Identities=27% Similarity=0.326 Sum_probs=65.1
Q ss_pred cchhhHHHhhhcc-ccccc---ccceeCCCCceEEEEECCCCceeee-CeEEEcccHHHHHHHHHccCCCCCCHHHHHHH
Q psy7294 6 SNSLTPILFMNKT-LALNS---KKWTDCNTFGVTLYKGDPYGFMLEV-PYAYIGINGFLTASLVDKYYKPDLTVQEAYSV 80 (123)
Q Consensus 6 ~~~~~~~~~~~~~-~~~~~---~~~~D~~~~gP~Ly~iD~~Gs~~~~-~~~a~G~Gs~~~~~~Ld~~y~~~mt~eEAi~L 80 (123)
++.++.+++.++. .|+.+ =.++|+ ++|+||.+||.|++.+. .++++|+++.++.++|++.|+++|+.+||+++
T Consensus 80 ~~~~~~~~~~~~~~~p~~~~~iiag~~~--~~~~l~~id~~g~~~~~~~~~~~G~~~~~~~~~l~~~~~~~~~~~~~~~~ 157 (164)
T cd01901 80 AKELAKLLQVYTQGRPFGVNLIVAGVDE--GGGNLYYIDPSGPVIENPGAVATGSRSQRAKSLLEKLYKPDMTLEEAVEL 157 (164)
T ss_pred HHHHHHHHHHhcCCCCcceEEEEEEEcC--CCCEEEEECCCcCEeecCcEEEECCCCHHHHHHHHHHhcCCCCHHHHHHH
Confidence 4556666666543 33333 234573 68999999999999999 99999999999999999999999999999999
Q ss_pred HHHHHH
Q psy7294 81 LKQCVH 86 (123)
Q Consensus 81 ~~k~i~ 86 (123)
+.+|+.
T Consensus 158 ~~~~l~ 163 (164)
T cd01901 158 ALKALK 163 (164)
T ss_pred HHHHHh
Confidence 999985
No 46
>KOG0863|consensus
Probab=98.83 E-value=1.4e-08 Score=78.77 Aligned_cols=86 Identities=14% Similarity=0.115 Sum_probs=76.2
Q ss_pred cceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCC--CCCCHHHHHHHHHHHHHHHHh-cccccCCcEEE
Q psy7294 25 KWTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYK--PDLTVQEAYSVLKQCVHHMKR-RTVLSYPKFTV 101 (123)
Q Consensus 25 ~~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~--~~mt~eEAi~L~~k~i~~a~~-Rd~~s~~~~~V 101 (123)
.||| +.||+||++.|+|++.+.+..++|+-|+-+..+||.+.. ++++.||-|..+..||+...- .+.+++.+++|
T Consensus 135 ~gYD--e~G~hl~e~~Psg~v~e~~g~sIGsRSQsARTyLEr~~e~f~~~~~eELI~~gi~Alr~tlp~de~lt~~nvsI 212 (264)
T KOG0863|consen 135 AGYD--ESGPHLYEFCPSGNVFECKGMSIGSRSQSARTYLERNLEEFEDSSPEELIKHGIMALRETLPEDEDLTGENVSI 212 (264)
T ss_pred Eeec--CCCceeEEEcCCccEEEEeeeecccchhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcCcccccccceeEE
Confidence 3899 678999999999999999999999999999999999764 589999999999999998865 44799999999
Q ss_pred EEEcCCC-eEEe
Q psy7294 102 KVLDRTG-TVNV 112 (123)
Q Consensus 102 ~vI~kdG-~~~l 112 (123)
.||-||. +..+
T Consensus 213 ~Ivgkd~pf~~~ 224 (264)
T KOG0863|consen 213 AIVGKDEPFTIL 224 (264)
T ss_pred EEEeCCCceEee
Confidence 9999985 4444
No 47
>KOG0184|consensus
Probab=98.39 E-value=6.4e-07 Score=69.25 Aligned_cols=77 Identities=17% Similarity=0.124 Sum_probs=63.2
Q ss_pred ceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHHHhcccccCCcEE--EEE
Q psy7294 26 WTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEAYSVLKQCVHHMKRRTVLSYPKFT--VKV 103 (123)
Q Consensus 26 ~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~~mt~eEAi~L~~k~i~~a~~Rd~~s~~~~~--V~v 103 (123)
.|| ++||+||.+||+|....++.+|+|-|.+.+..-||+.--.+||.+|+++-+-+-|-.+. |-..-..|+ +..
T Consensus 140 ~yd--~~g~~LymiepSG~~~~Y~~aaiGKgrq~aKtElEKL~~~~mt~~e~VkeaakIiY~~H--De~KdK~feiEm~w 215 (254)
T KOG0184|consen 140 SYD--DEGPQLYMIEPSGSSYGYKGAAIGKGRQAAKTELEKLKIDEMTCKELVKEAAKIIYKVH--DENKDKEFEIEMGW 215 (254)
T ss_pred EEe--CCCceEEEEcCCCCccceeeeeccchhHHHHHHHHhcccccccHHHHHHHHHheeEeec--ccccCcceEEEEEE
Confidence 478 78999999999999999999999999999999999987789999999988777765553 345555555 444
Q ss_pred EcC
Q psy7294 104 LDR 106 (123)
Q Consensus 104 I~k 106 (123)
|..
T Consensus 216 vg~ 218 (254)
T KOG0184|consen 216 VGE 218 (254)
T ss_pred EEe
Confidence 543
No 48
>KOG3361|consensus
Probab=95.14 E-value=0.052 Score=39.38 Aligned_cols=43 Identities=19% Similarity=0.281 Sum_probs=41.1
Q ss_pred EECCCCceeeeCeEEEcccHHHHHHHHHccCCCCCCHHHHHHH
Q psy7294 38 KGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEAYSV 80 (123)
Q Consensus 38 ~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~~mt~eEAi~L 80 (123)
.+|-.|.+...+|-..|-||..+-+-+-.+|-.++|.|||.++
T Consensus 72 kvd~~g~I~dakFKTFGCGSAIASSS~aTewvkgkt~dea~kI 114 (157)
T KOG3361|consen 72 KVDDSGVIEDAKFKTFGCGSAIASSSLATEWVKGKTLDEALKI 114 (157)
T ss_pred EECCCCcEEEeeeeecccchHhhhhHHHHHHHccccHHHHHhc
Confidence 6889999999999999999999999999999999999999876
No 49
>PF09894 DUF2121: Uncharacterized protein conserved in archaea (DUF2121); InterPro: IPR016754 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. They do show distant similarity to NTPases and to nucleic acid binding enzymes.
Probab=94.67 E-value=0.2 Score=38.21 Aligned_cols=70 Identities=9% Similarity=0.161 Sum_probs=54.9
Q ss_pred EECCCCceeeeCeEEEccc---------HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCC
Q psy7294 38 KGDPYGFMLEVPYAYIGIN---------GFLTASLVDKYYKPDLTVQEAYSVLKQCVHHMKRRTVLSYPKFTVKVLDRT 107 (123)
Q Consensus 38 ~iD~~Gs~~~~~~~a~G~G---------s~~~~~~Ld~~y~~~mt~eEAi~L~~k~i~~a~~Rd~~s~~~~~V~vI~kd 107 (123)
-+|-.|+-....-...|+| -..+...|.++|++.|+.+++.+++.++|+.+...-..-++.+.+..+++.
T Consensus 102 Ivei~~~~i~~~~~g~~sgiIVfGNk~~K~ia~~~lkk~~~~k~~l~~i~~i~~~i~~~~a~~tpsvS~~~d~~~~~~~ 180 (194)
T PF09894_consen 102 IVEIENDEITNKSRGEGSGIIVFGNKFTKEIANKELKKYWKPKMSLKDIENIFEKIMEEVASKTPSVSKEYDIYITTKK 180 (194)
T ss_pred EEEecCCeEEEEecCCceeEEEECCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhcCCCccCcEEEEEeccc
Confidence 3455565555555444542 467888899999999999999999999999998887788899998887654
No 50
>COG5405 HslV ATP-dependent protease HslVU (ClpYQ), peptidase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=93.00 E-value=0.31 Score=36.41 Aligned_cols=69 Identities=13% Similarity=0.120 Sum_probs=54.1
Q ss_pred eEEEEECCCCcee-eeC-eEEEcccHHHHHHHHHccCCC-CCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEc
Q psy7294 34 VTLYKGDPYGFML-EVP-YAYIGINGFLTASLVDKYYKP-DLTVQEAYSVLKQCVHHMKRRTVLSYPKFTVKVLD 105 (123)
Q Consensus 34 P~Ly~iD~~Gs~~-~~~-~~a~G~Gs~~~~~~Ld~~y~~-~mt~eEAi~L~~k~i~~a~~Rd~~s~~~~~V~vI~ 105 (123)
-.++-+...|-.. +.. ..|+|||..|+++-....++. ++| |.+++++++..+.+=++++..+|.|-.+.
T Consensus 105 ~~il~isG~gdV~epe~~~~aIGSGgnyAl~AarAl~~~~~ls---A~eIa~~sl~iA~eiciyTN~ni~ve~l~ 176 (178)
T COG5405 105 THILIITGNGDVIEPEDDIIAIGSGGNYALSAARALMENTELS---AREIAEKSLKIAGDICIYTNHNIVVEELR 176 (178)
T ss_pred CcEEEEecCcceecCCCCeEEEcCCchHHHHHHHHHHhccCCC---HHHHHHHHHhhhheEEEecCCcEEEEEee
Confidence 3577777777444 444 899999999999988887753 665 56789999999998888888888887764
No 51
>COG3484 Predicted proteasome-type protease [Posttranslational modification, protein turnover, chaperones]
Probab=92.29 E-value=0.24 Score=38.44 Aligned_cols=77 Identities=16% Similarity=0.163 Sum_probs=64.1
Q ss_pred ceEEEEECCCCceeee----CeEEEcccHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCC
Q psy7294 33 GVTLYKGDPYGFMLEV----PYAYIGINGFLTASLVDKYYKPDLTVQEAYSVLKQCVHHMKRRTVLSYPKFTVKVLDRTG 108 (123)
Q Consensus 33 gP~Ly~iD~~Gs~~~~----~~~a~G~Gs~~~~~~Ld~~y~~~mt~eEAi~L~~k~i~~a~~Rd~~s~~~~~V~vI~kdG 108 (123)
-|.||.+=|.|++.+. +|.-+|- +-+-.|+||..++-++.+|||.+.++-.+.+-.+-.+.-|--+.+-+..+|-
T Consensus 124 pp~Ly~IYpqGNFIqaT~etpf~QiGE-tKYGKPildR~i~~~~pLeea~kcaLvS~DSTlkSNiSVGlPldLl~~e~ds 202 (255)
T COG3484 124 PPRLYLIYPQGNFIQATPETPFLQIGE-TKYGKPILDRTITYDTPLEEAAKCALVSFDSTLKSNISVGLPLDLLVYEADS 202 (255)
T ss_pred CceeEEEccCCCeeecCCCCceeEccc-cccCchhhhhhhhccCCHHHHhhheEEecchhhhccccccCCceeEEEeccc
Confidence 4799999999999864 4666664 4567899999999999999999999989988888777778888888888886
Q ss_pred eE
Q psy7294 109 TV 110 (123)
Q Consensus 109 ~~ 110 (123)
.+
T Consensus 203 ~~ 204 (255)
T COG3484 203 FS 204 (255)
T ss_pred ee
Confidence 43
No 52
>COG4079 Uncharacterized protein conserved in archaea [Function unknown]
Probab=84.70 E-value=3.7 Score=32.77 Aligned_cols=51 Identities=8% Similarity=0.123 Sum_probs=45.1
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCC
Q psy7294 57 GFLTASLVDKYYKPDLTVQEAYSVLKQCVHHMKRRTVLSYPKFTVKVLDRT 107 (123)
Q Consensus 57 s~~~~~~Ld~~y~~~mt~eEAi~L~~k~i~~a~~Rd~~s~~~~~V~vI~kd 107 (123)
-..+..+|.++|.+.++++++.+++..||..+......-++.+.+..++++
T Consensus 131 Ke~aneflk~~l~~k~~lqd~~dal~elfe~vss~tpsVskeydiy~vs~~ 181 (293)
T COG4079 131 KEVANEFLKDNLTKKSKLQDAVDALMELFETVSSKTPSVSKEYDIYQVSSN 181 (293)
T ss_pred HHHHHHHHHhhccCCCCHHHHHHHHHHHHHHhhcCCCcccceeEEEEecCC
Confidence 456788899999999999999999999999999877788899999988765
No 53
>COG3193 GlcG Uncharacterized protein, possibly involved in utilization of glycolate and propanediol [General function prediction only]
Probab=82.12 E-value=4.5 Score=29.44 Aligned_cols=37 Identities=27% Similarity=0.343 Sum_probs=33.0
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCe
Q psy7294 69 KPDLTVQEAYSVLKQCVHHMKRRTVLSYPKFTVKVLDRTGT 109 (123)
Q Consensus 69 ~~~mt~eEAi~L~~k~i~~a~~Rd~~s~~~~~V~vI~kdG~ 109 (123)
++.+|.|+|.+++..++.++.+ .+-.+.|.|||..|.
T Consensus 5 ~~~Ls~e~a~~ii~aA~a~a~~----~g~~VtvaVVD~~G~ 41 (141)
T COG3193 5 KPVLSLELANKIIAAAVAEAQQ----LGVPVTVAVVDAGGH 41 (141)
T ss_pred ccccCHHHHHHHHHHHHHHHHH----hCCceEEEEECCCCC
Confidence 4679999999999999999986 389999999999994
No 54
>PRK09732 hypothetical protein; Provisional
Probab=81.45 E-value=4.9 Score=28.74 Aligned_cols=38 Identities=16% Similarity=0.140 Sum_probs=32.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCeEE
Q psy7294 70 PDLTVQEAYSVLKQCVHHMKRRTVLSYPKFTVKVLDRTGTVN 111 (123)
Q Consensus 70 ~~mt~eEAi~L~~k~i~~a~~Rd~~s~~~~~V~vI~kdG~~~ 111 (123)
+.||.+.|.+++..++.++.+. +-.+.|.|||..|.-.
T Consensus 5 ~~Ltl~~A~~~~~aA~~~A~~~----g~~v~iaVvD~~G~l~ 42 (134)
T PRK09732 5 VILSQQMASAIIAAGQEEAQKN----NWSVSIAVADDGGHLL 42 (134)
T ss_pred ccCCHHHHHHHHHHHHHHHHHh----CCCEEEEEEcCCCCEE
Confidence 5699999999999999999873 4589999999999543
No 55
>PF03928 DUF336: Domain of unknown function (DUF336); InterPro: IPR005624 This entry contains uncharacterised proteins, including GlcG P45504 from SWISSPROT. The alignment contains many conserved motifs that are suggestive of cofactor binding and enzymatic activity.; PDB: 2A2L_D 3FPW_A 3FPV_E.
Probab=80.99 E-value=3.1 Score=29.04 Aligned_cols=39 Identities=23% Similarity=0.409 Sum_probs=28.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCeEEe
Q psy7294 70 PDLTVQEAYSVLKQCVHHMKRRTVLSYPKFTVKVLDRTGTVNV 112 (123)
Q Consensus 70 ~~mt~eEAi~L~~k~i~~a~~Rd~~s~~~~~V~vI~kdG~~~l 112 (123)
|.+|.++|.+++..+++.+.++ +-.+.|.|||..|....
T Consensus 1 p~l~~~~A~~l~~~a~~~a~~~----g~~v~iaVvd~~G~~~~ 39 (132)
T PF03928_consen 1 PSLTLEDAWKLGDAAVEEARER----GLPVSIAVVDAGGHLLA 39 (132)
T ss_dssp EEE-HHHHHHHHHHHHHHHHHT----T---EEEEEETTS-EEE
T ss_pred CCcCHHHHHHHHHHHHHHHHHh----CCCeEEEEEECCCCEEE
Confidence 3578999999999999999874 34488999999996554
No 56
>KOG1930|consensus
Probab=64.55 E-value=4.4 Score=34.59 Aligned_cols=17 Identities=29% Similarity=0.839 Sum_probs=15.3
Q ss_pred cCCCCCCHHHHHHHHHH
Q psy7294 67 YYKPDLTVQEAYSVLKQ 83 (123)
Q Consensus 67 ~y~~~mt~eEAi~L~~k 83 (123)
.|||++|.|+||+|+++
T Consensus 214 WYKP~isREQAIalLrd 230 (483)
T KOG1930|consen 214 WYKPNISREQAIALLRD 230 (483)
T ss_pred ccCCCCCHHHHHHHhhc
Confidence 57999999999999875
No 57
>PF08269 Cache_2: Cache domain; InterPro: IPR013163 Cache is an extracellular domain that is predicted to have a role in small-molecule recognition in a wide range of proteins, including the animal dihydropyridine-sensitive voltage-gated Ca2+ channel; alpha-2delta subunit, and various bacterial chemotaxis receptors. The name Cache comes from CAlcium channels and CHEmotaxis receptors. This domain consists of an N-terminal part with three predicted strands and an alpha-helix, and a C-terminal part with a strand dyad followed by a relatively unstructured region. The N-terminal portion of the (unpermuted) Cache domain contains three predicted strands that could form a sheet analogous to that present in the core of the PAS domain structure. Cache domains are particularly widespread in bacteria, with Vibrio cholerae. The animal calcium channel alpha-2delta subunits might have acquired a part of their extracellular domains from a bacterial source []. The Cache domain appears to have arisen from the GAF-PAS fold despite their divergent functions []. This entry is composed of the type 2 Cache domain.; PDB: 2QHK_A 4EXO_A.
Probab=63.39 E-value=22 Score=22.95 Aligned_cols=40 Identities=15% Similarity=0.140 Sum_probs=21.9
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCeEEee
Q psy7294 69 KPDLTVQEAYSVLKQCVHHMKRRTVLSYPKFTVKVLDRTGTVNVL 113 (123)
Q Consensus 69 ~~~mt~eEAi~L~~k~i~~a~~Rd~~s~~~~~V~vI~kdG~~~l~ 113 (123)
...+|.|||.+.++..|..+.. .+++ =+.+.|.+|+....
T Consensus 32 ~g~ls~eea~~~a~~~l~~~r~----~~~g-Y~fi~d~~g~~l~h 71 (95)
T PF08269_consen 32 AGKLSEEEAQQQAREALRALRY----GGDG-YFFIYDMDGVVLAH 71 (95)
T ss_dssp TT-----TTHHHHHHHHHH--S----BTTB---EEE-TTSBEEEE
T ss_pred cCCccHHHHHHHHHHHHhcccc----CCCC-eEEEEeCCCeEEEc
Confidence 3569999999999999988853 3344 45667999975554
No 58
>PRK02487 hypothetical protein; Provisional
Probab=61.60 E-value=35 Score=24.78 Aligned_cols=38 Identities=13% Similarity=0.148 Sum_probs=31.1
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCeEE
Q psy7294 69 KPDLTVQEAYSVLKQCVHHMKRRTVLSYPKFTVKVLDRTGTVN 111 (123)
Q Consensus 69 ~~~mt~eEAi~L~~k~i~~a~~Rd~~s~~~~~V~vI~kdG~~~ 111 (123)
.+.+|.++|.+|+..++..+.++ +-.+.|.|++ .|...
T Consensus 20 ~~~l~~~~A~~l~~~a~~~A~~~----g~~v~IaVv~-~G~~l 57 (163)
T PRK02487 20 FPHFDNDDAWQLGSLLVELARER----GLPIAIDITL-NGQPL 57 (163)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHc----CCCEEEEEEE-CCcEE
Confidence 47899999999999999999764 4579999985 67443
No 59
>PF05117 DUF695: Family of unknown function (DUF695) ; InterPro: IPR016097 This entry is found at the N terminus of a number of proteobacterial proteins of unknown function.
Probab=56.10 E-value=38 Score=23.46 Aligned_cols=46 Identities=13% Similarity=0.103 Sum_probs=31.0
Q ss_pred CCCHHHHHHH---HHHHHHHHHhcccccCCcEEEEEEcCCCeEEeecccccc
Q psy7294 71 DLTVQEAYSV---LKQCVHHMKRRTVLSYPKFTVKVLDRTGTVNVLQDLKYS 119 (123)
Q Consensus 71 ~mt~eEAi~L---~~k~i~~a~~Rd~~s~~~~~V~vI~kdG~~~l~~~~k~~ 119 (123)
+|.-+|..+. +..+|....+ -.+..+.|+++|.+|.+.+-...+..
T Consensus 51 GlP~~ee~~~L~~iEd~i~~~l~---~~~~~i~vG~~t~~g~r~~~fY~~d~ 99 (136)
T PF05117_consen 51 GLPSEEEYEELNDIEDAIIEALE---ADGNAIYVGRITGNGRREFYFYCKDP 99 (136)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhh---cCCcceEEEEEEECCEEEEEEEECCh
Confidence 5555555555 4455555443 34558999999999999988766653
No 60
>PF01250 Ribosomal_S6: Ribosomal protein S6; InterPro: IPR000529 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S6 is one of the proteins from the small ribosomal subunit. In Escherichia coli, S6 is known to bind together with S18 to 16S ribosomal RNA. It belongs to a family of ribosomal proteins which, on the basis of sequence similarities, groups bacterial, red algal chloroplast and cyanelle S6 ribosomal proteins.; GO: 0003735 structural constituent of ribosome, 0019843 rRNA binding, 0006412 translation, 0005840 ribosome; PDB: 3BBN_F 3R3T_B 3F1E_F 2QNH_g 2OW8_g 3PYQ_F 3PYS_F 3PYU_F 3MR8_F 3PYN_F ....
Probab=55.88 E-value=35 Score=22.04 Aligned_cols=45 Identities=16% Similarity=0.283 Sum_probs=34.0
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCeEEeecccccc
Q psy7294 69 KPDLTVQEAYSVLKQCVHHMKRRTVLSYPKFTVKVLDRTGTVNVLQDLKYS 119 (123)
Q Consensus 69 ~~~mt~eEAi~L~~k~i~~a~~Rd~~s~~~~~V~vI~kdG~~~l~~~~k~~ 119 (123)
+|+++.+|.-+++.++-..+.+ .+-+|.-++.=|.+.|..++|+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~i~~------~gg~v~~~~~~G~r~LaY~i~k~ 54 (92)
T PF01250_consen 10 RPDLSEEEIKKLIERVKKIIEK------NGGVVRSVENWGKRRLAYPIKKQ 54 (92)
T ss_dssp -TTSCHHHHHHHHHHHHHHHHH------TTEEEEEEEEEEEEEESSEETTE
T ss_pred CCCCCHHHHHHHHHHHHHHHHH------CCCEEEEEEEEeecccccCCCCC
Confidence 5889999999998888877765 34455556667999999887763
No 61
>COG0822 IscU NifU homolog involved in Fe-S cluster formation [Energy production and conversion]
Probab=55.16 E-value=40 Score=24.44 Aligned_cols=55 Identities=22% Similarity=0.228 Sum_probs=45.2
Q ss_pred EEE-EECCCCceeeeCeEEEcccHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHHHh
Q psy7294 35 TLY-KGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEAYSVLKQCVHHMKR 90 (123)
Q Consensus 35 ~Ly-~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~~mt~eEAi~L~~k~i~~a~~ 90 (123)
.|| .+| -|.....+|-..|-+...+-+=+=.++=.+.|.+||+++.......+.+
T Consensus 44 ~l~lkv~-~~~I~d~~F~~~GC~is~ASss~~te~v~Gkti~EAl~i~~~~~~m~~~ 99 (150)
T COG0822 44 TLYLKVD-NGVIEDAKFKGFGCAISIASSSMMTELVKGKTLDEALKITEAFTDMAKE 99 (150)
T ss_pred EEEEEEc-CCEEEEEEeeecCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 455 667 8899999999999988888877777777999999999999766666654
No 62
>PRK11325 scaffold protein; Provisional
Probab=53.93 E-value=49 Score=23.06 Aligned_cols=54 Identities=15% Similarity=0.181 Sum_probs=40.9
Q ss_pred EEE-EECCCCceeeeCeEEEcccHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHH
Q psy7294 35 TLY-KGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEAYSVLKQCVHHM 88 (123)
Q Consensus 35 ~Ly-~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~~mt~eEAi~L~~k~i~~a 88 (123)
.|| .+|.-|.+...+|.+.|-+...+-.-+=.++=.+.|++||.++..+.+.+.
T Consensus 42 ~l~l~v~~~~~I~d~~f~~~GC~is~Asas~~~e~~~Gktl~ea~~i~~~~i~~~ 96 (127)
T PRK11325 42 KLQIKVNDEGIIEDAKFKTYGCGSAIASSSLVTEWVKGKTLDEALAIKNTDIAEE 96 (127)
T ss_pred EEEEEECCCCeEEEEEEEeeCCHHHHHHHHHHHHHHcCCCHHHHHhcCHHHHHHH
Confidence 445 676668899999999998766666655556668999999999988766544
No 63
>PF04485 NblA: Phycobilisome degradation protein nblA ; InterPro: IPR007574 In the cyanobacterium Synechococcus species PCC 7942 (P35087 from SWISSPROT), nblA triggers degradation of light-harvesting phycobiliproteins in response to deprivation nutrients including nitrogen, phosphorus and sulphur. The mechanism of nblA function is not known, but it has been hypothesised that nblA may act by disrupting phycobilisome structure, activating a protease or tagging phycobiliproteins for proteolysis. Members of this family have also been identified in the chloroplasts of some red algae.; PDB: 3CS5_D 1OJH_L 2QDO_B 2Q8V_A.
Probab=53.37 E-value=20 Score=21.83 Aligned_cols=23 Identities=17% Similarity=0.236 Sum_probs=19.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcc
Q psy7294 70 PDLTVQEAYSVLKQCVHHMKRRT 92 (123)
Q Consensus 70 ~~mt~eEAi~L~~k~i~~a~~Rd 92 (123)
.+||.|+|.+++.+..+..+-||
T Consensus 20 ~~ls~Eqaq~~Lve~~rqmmike 42 (53)
T PF04485_consen 20 QKLSREQAQELLVELYRQMMIKE 42 (53)
T ss_dssp CTS-HHHHHHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999998887665
No 64
>PF01713 Smr: Smr domain; InterPro: IPR002625 This family includes the Smr (Small MutS Related) proteins, and the C-terminal region of the MutS2 protein. It has been suggested that this domain interacts with the MutS1 (P23909 from SWISSPROT) protein in the case of Smr proteins and with the N-terminal MutS related region of MutS2, P94545 from SWISSPROT [].; PDB: 3QD7_X 2D9I_A 3FAU_A 2VKC_A 2ZQE_A.
Probab=52.98 E-value=31 Score=21.73 Aligned_cols=33 Identities=24% Similarity=0.499 Sum_probs=23.4
Q ss_pred CCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCC
Q psy7294 71 DLTVQEAYSVLKQCVHHMKRRTVLSYPKFTVKVLDRTG 108 (123)
Q Consensus 71 ~mt~eEAi~L~~k~i~~a~~Rd~~s~~~~~V~vI~kdG 108 (123)
+|+.+||+..+.+.|..+..+.. -.+.||+=-|
T Consensus 5 G~~~~eA~~~l~~~l~~~~~~~~-----~~~~II~G~G 37 (83)
T PF01713_consen 5 GLTVEEALRALEEFLDEARQRGI-----RELRIITGKG 37 (83)
T ss_dssp TS-HHHHHHHHHHHHHHHHHTTH-----SEEEEE--ST
T ss_pred CCcHHHHHHHHHHHHHHHHHcCC-----CEEEEEeccC
Confidence 68999999999999999976532 4566776555
No 65
>smart00463 SMR Small MutS-related domain.
Probab=50.74 E-value=39 Score=21.09 Aligned_cols=36 Identities=19% Similarity=0.338 Sum_probs=26.5
Q ss_pred CCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCeE
Q psy7294 71 DLTVQEAYSVLKQCVHHMKRRTVLSYPKFTVKVLDRTGTV 110 (123)
Q Consensus 71 ~mt~eEAi~L~~k~i~~a~~Rd~~s~~~~~V~vI~kdG~~ 110 (123)
+|+.+||+..+.+.|..+..+. ..-.+.||+--|.+
T Consensus 8 G~~~~eA~~~l~~~l~~~~~~~----~~~~~~II~G~G~~ 43 (80)
T smart00463 8 GLTVEEALTALDKFLNNARLKG----LEQKLVIITGKGKH 43 (80)
T ss_pred CCCHHHHHHHHHHHHHHHHHcC----CCceEEEEEcccCC
Confidence 6999999999999999887642 11356777765543
No 66
>COG1754 Uncharacterized C-terminal domain of topoisomerase IA [General function prediction only]
Probab=49.16 E-value=17 Score=29.48 Aligned_cols=56 Identities=21% Similarity=0.185 Sum_probs=36.2
Q ss_pred ccceeCCCCceEEEEECCCCceeeeCeEEEccc-HHHHHHHHHccCCC-CCCHHHHHHHHH
Q psy7294 24 KKWTDCNTFGVTLYKGDPYGFMLEVPYAYIGIN-GFLTASLVDKYYKP-DLTVQEAYSVLK 82 (123)
Q Consensus 24 ~~~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~G-s~~~~~~Ld~~y~~-~mt~eEAi~L~~ 82 (123)
..|.||..+.+-..-.-.+|-|+.. ..|-+ ---...=|-+.|++ ++|+|+|++|+.
T Consensus 77 ~LG~DP~tG~eI~~k~GryGPYVq~---~lg~~~~kpkraSLpkg~~~e~ItLE~AL~LLs 134 (298)
T COG1754 77 VLGIDPETGEEIYLKNGRYGPYVQE---QLGDPKPKPKRASLPKGWKPETITLEKALKLLS 134 (298)
T ss_pred ccccCCCCCceeEEeccCCCceeee---ecCCCCCCcccccCCCCCChhhCcHHHHHHHHc
Confidence 4577876666666678888888765 34444 22222233455654 699999999965
No 67
>PF14748 P5CR_dimer: Pyrroline-5-carboxylate reductase dimerisation; PDB: 2RCY_D 3TRI_A 2IZZ_B 2GR9_B 2GRA_B 2GER_C 1YQG_A 2AG8_A 3GT0_A 2AMF_E ....
Probab=45.16 E-value=28 Score=23.46 Aligned_cols=38 Identities=13% Similarity=0.073 Sum_probs=27.2
Q ss_pred EcccHHHHHHHHHc----cCCCCCCHHHHHHHHHHHHHHHHh
Q psy7294 53 IGINGFLTASLVDK----YYKPDLTVQEAYSVLKQCVHHMKR 90 (123)
Q Consensus 53 ~G~Gs~~~~~~Ld~----~y~~~mt~eEAi~L~~k~i~~a~~ 90 (123)
+|+|-.|+.-+++. .-+.+++.++|.+++..++..+.+
T Consensus 13 sGsgpA~~~~~~eal~~a~v~~Gl~~~~A~~lv~~t~~G~a~ 54 (107)
T PF14748_consen 13 SGSGPAYFFLFIEALADAAVAQGLPREEARKLVAQTFIGAAK 54 (107)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 67887676666665 345799999999999988876643
No 68
>TIGR01999 iscU FeS cluster assembly scaffold IscU. This model represents IscU, a homolog of the N-terminal region of NifU, an Fe-S cluster assembly protein found mostly in nitrogen-fixing bacteria. IscU is considered part of the IscSUA-hscAB-fdx system of Fe-S assembly, whereas NifU is found in nitrogenase-containing (nitrogen-fixing) species. A NifU-type protein is also found in Helicobacter and Campylobacter. IscU and NifU are considered scaffold proteins on which Fe-S clusters are assembled before transfer to apoproteins. This model excludes true NifU proteins as in Klebsiella pneumoniae and Anabaena sp. as well as archaeal homologs. It includes largely proteobacterial and eukaryotic forms.
Probab=43.30 E-value=92 Score=21.48 Aligned_cols=54 Identities=13% Similarity=0.174 Sum_probs=39.7
Q ss_pred EEE-EECCCCceeeeCeEEEcccHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHH
Q psy7294 35 TLY-KGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEAYSVLKQCVHHM 88 (123)
Q Consensus 35 ~Ly-~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~~mt~eEAi~L~~k~i~~a 88 (123)
.|| .+|..|.....+|.+.|-+...+-.-+=.++=.+.|++||.++..+.+.++
T Consensus 40 ~l~l~v~~~~~I~d~~f~~~GC~~s~Asas~~~e~i~Gktl~ea~~i~~~~i~~~ 94 (124)
T TIGR01999 40 KLQIKVNDDGIIEDAKFKTFGCGSAIASSSLATELIKGKSLEEALKIKNTEIAKE 94 (124)
T ss_pred EEEEEECCCCeEEEEEEEecCcHHHHHHHHHHHHHHcCCCHHHHHhccHHHHHHH
Confidence 444 566668899999999997766666544455557899999999987765544
No 69
>PF00610 DEP: Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP); InterPro: IPR000591 This entry represents the DEP (Dishevelled, Egl-10 and Pleckstrin) domain, a globular domain of about 80 residues that is found in over 50 proteins involved in G-protein signalling pathways. It was named after the three proteins it was initially found in: Dishevelled (Dsh and Dvl), which play a key role in the transduction of the Wg/Wnt signal from the cell surface to the nucleus; it is a segment polarity protein required to establish coherent arrays of polarized cells and segments in embryos, and plays a role in wingless signalling. Egl-10, which regulates G-protein signalling in the central nervous system. Pleckstrin, the major substrate of protein kinase C in platelets; Pleckstrin contains two PH domains flanking the DEP domain. Mammalian regulators of G-protein signalling also contain these domains, and regulate signal transduction by increasing the GTPase activity of G-protein alpha subunits, thereby driving them into their inactive GDP-bound form. It has been proposed that the DEP domain could play a selective role in targeting DEP domain-containing proteins to specific subcellular membranous sites, perhaps even to specific G protein-coupled signaling pathways [, ]. Nuclear magnetic resonance spectroscopy has revealed that the DEP domain comprises a three-helix bundle, a beta-hairpin 'arm' composed of two beta-strands and two short beta-strands in the C-terminal region [].; GO: 0035556 intracellular signal transduction; PDB: 1UHW_A 1V3F_A 2YSR_A 2CSO_A 1W4M_A 2PBI_C 1O7F_A 2BYV_E 1FSH_A 3ML6_D ....
Probab=41.62 E-value=66 Score=19.62 Aligned_cols=32 Identities=13% Similarity=0.014 Sum_probs=22.8
Q ss_pred ccHHHHHHHHHccCCCCCCHHHHHHHHHHHHH
Q psy7294 55 INGFLTASLVDKYYKPDLTVQEAYSVLKQCVH 86 (123)
Q Consensus 55 ~Gs~~~~~~Ld~~y~~~mt~eEAi~L~~k~i~ 86 (123)
.|+..+..+++..-....+.+||++++..=+.
T Consensus 19 ~G~e~v~WL~~~~~~~~~~r~eA~~l~q~Ll~ 50 (74)
T PF00610_consen 19 TGSEAVDWLMDNFEGFVRDREEAVQLGQELLD 50 (74)
T ss_dssp EHHHHHHHHHHTSCTSTSSHHHHHHHHHHHHH
T ss_pred EhHHHHHHHHHhccccccCHHHHHHHHHHHHH
Confidence 35677777775443458999999999876553
No 70
>PF01592 NifU_N: NifU-like N terminal domain; InterPro: IPR002871 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] []. FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins [, ]. It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly []. The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA []. SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA [], acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins []. Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen []. This entry represents the N-terminal of NifU and homologous proteins. NifU contains two domains: an N-terminal and a C-terminal domain (IPR001075 from INTERPRO) []. These domains exist either together or on different polypeptides, both domains being found in organisms that do not fix nitrogen (e.g. yeast), so they have a broader significance in the cell than nitrogen fixation. ; GO: 0005506 iron ion binding, 0051536 iron-sulfur cluster binding, 0016226 iron-sulfur cluster assembly; PDB: 3LVL_A 4EB5_C 4EB7_C 1WFZ_A 2Z7E_C 2AZH_A 1XJS_A 1Q48_A 1R9P_A 2KQK_A ....
Probab=40.56 E-value=87 Score=21.56 Aligned_cols=53 Identities=13% Similarity=0.063 Sum_probs=39.9
Q ss_pred EECCC-CceeeeCeEEEcccHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHHHh
Q psy7294 38 KGDPY-GFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEAYSVLKQCVHHMKR 90 (123)
Q Consensus 38 ~iD~~-Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~~mt~eEAi~L~~k~i~~a~~ 90 (123)
.+|.. |.+...+|.+.|-+-..+-.=+=..+=.+.|++||.+|..+-|.....
T Consensus 43 ~i~~~~~~I~d~~f~~~GC~~~~Asas~~~~~i~gk~l~ea~~i~~~~i~~~l~ 96 (126)
T PF01592_consen 43 KIDDDGGRIKDAKFQGFGCAISIASASMMCELIKGKTLEEALKITAEDIEEALG 96 (126)
T ss_dssp EESSSTSBEEEEEEEEESSHHHHHHHHHHHHHHTTSBHHHHHCHHHHHHHHHHT
T ss_pred EEecCCCeEEEEEEEeecChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Confidence 77887 899999999999776555554444455789999999887766766654
No 71
>PF11216 DUF3012: Protein of unknown function (DUF3012); InterPro: IPR021379 This family of proteins with unknown function is restricted to Gammaproteobacteria.
Probab=40.26 E-value=56 Score=17.86 Aligned_cols=22 Identities=36% Similarity=0.448 Sum_probs=17.9
Q ss_pred HHccCCCCCCHHHHHHHHHHHH
Q psy7294 64 VDKYYKPDLTVQEAYSVLKQCV 85 (123)
Q Consensus 64 Ld~~y~~~mt~eEAi~L~~k~i 85 (123)
|.+.=+.+-|.+||.+.++.||
T Consensus 10 m~~kpK~dWtanea~~fAKhCv 31 (32)
T PF11216_consen 10 MKEKPKGDWTANEAADFAKHCV 31 (32)
T ss_pred HhhCCcccCcHhHHHHHHHhhc
Confidence 4444467899999999999997
No 72
>PRK14065 exodeoxyribonuclease VII small subunit; Provisional
Probab=39.97 E-value=73 Score=21.28 Aligned_cols=33 Identities=12% Similarity=0.326 Sum_probs=25.8
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHHH
Q psy7294 57 GFLTASLVDKYYKPDLTVQEAYSVLKQCVHHMK 89 (123)
Q Consensus 57 s~~~~~~Ld~~y~~~mt~eEAi~L~~k~i~~a~ 89 (123)
-.-+..+|++.-.|++|++++++|=+.++..+.
T Consensus 31 lerakeiLe~LndpeisL~eSvkLYkeG~~lL~ 63 (86)
T PRK14065 31 VHSLEQAIDRLNDPNLSLKDGMDLYKTAMQELF 63 (86)
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 345677888888899999999999777766554
No 73
>PRK00453 rpsF 30S ribosomal protein S6; Reviewed
Probab=39.92 E-value=87 Score=20.97 Aligned_cols=44 Identities=11% Similarity=0.206 Sum_probs=32.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCeEEeeccccc
Q psy7294 69 KPDLTVQEAYSVLKQCVHHMKRRTVLSYPKFTVKVLDRTGTVNVLQDLKY 118 (123)
Q Consensus 69 ~~~mt~eEAi~L~~k~i~~a~~Rd~~s~~~~~V~vI~kdG~~~l~~~~k~ 118 (123)
+|+++.+|.-+++.+.-..+.. .+-+|.-++.-|.+.|..++|+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~i~~------~gg~i~~~~~~G~r~LAY~I~k 54 (108)
T PRK00453 11 RPDLSEEQVKALVERFKGVITE------NGGTIHKVEDWGRRRLAYPINK 54 (108)
T ss_pred CCCCCHHHHHHHHHHHHHHHHH------CCCEEEEEecccccccceEcCC
Confidence 6889999998888777666654 2344555677799999988776
No 74
>PF02609 Exonuc_VII_S: Exonuclease VII small subunit; InterPro: IPR003761 Exonuclease VII is composed of two non-identical subunits; one large subunit and 4 small ones []. This enzyme catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield nucleoside 5'-phosphates.; GO: 0008855 exodeoxyribonuclease VII activity, 0006308 DNA catabolic process, 0009318 exodeoxyribonuclease VII complex; PDB: 1VP7_F.
Probab=39.85 E-value=58 Score=19.17 Aligned_cols=29 Identities=17% Similarity=0.404 Sum_probs=19.3
Q ss_pred HHHHccCCCCCCHHHHHHHHHHHHHHHHh
Q psy7294 62 SLVDKYYKPDLTVQEAYSVLKQCVHHMKR 90 (123)
Q Consensus 62 ~~Ld~~y~~~mt~eEAi~L~~k~i~~a~~ 90 (123)
.++++-=.+++|+++++++-.+++..+..
T Consensus 10 ~Iv~~Le~~~~sLdes~~lyeeg~~l~~~ 38 (53)
T PF02609_consen 10 EIVEKLESGELSLDESLKLYEEGMELIKK 38 (53)
T ss_dssp HHHHHHHTT-S-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 34444445799999999998888876653
No 75
>cd04513 Glycosylasparaginase Glycosylasparaginase catalyzes the hydrolysis of the glycosylamide bond of asparagine-linked glycoproteins. This enzyme is an amidase located inside lysosomes. Mutation of this gene in humans causes a genetic disorder known as aspartylglycosaminuria (AGU). The glycosylasparaginase precursor undergoes autoproteolysis through an N-O or N-S acyl rearrangement of the peptide bond, which leads to the cleavage of a peptide bond between an Asp and a Thr. This proteolysis step generates an exposed N-terminal catalytic threonine and activates the enzyme.
Probab=38.67 E-value=1.3e+02 Score=24.04 Aligned_cols=60 Identities=15% Similarity=0.055 Sum_probs=37.4
Q ss_pred eEEEcccHHHHHHHHHc----cCCCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCeEEe
Q psy7294 50 YAYIGINGFLTASLVDK----YYKPDLTVQEAYSVLKQCVHHMKRRTVLSYPKFTVKVLDRTGTVNV 112 (123)
Q Consensus 50 ~~a~G~Gs~~~~~~Ld~----~y~~~mt~eEAi~L~~k~i~~a~~Rd~~s~~~~~V~vI~kdG~~~l 112 (123)
+.++|.|-.++...+-. ..+.+++.+||.+-+.+-+ .++....+...-|..||++|..-.
T Consensus 187 ~s~TG~GE~iir~~~A~~v~~~m~~G~~~~~A~~~~i~~~---~~~~~~~~~~gg~Iavd~~G~~~~ 250 (263)
T cd04513 187 AAATGDGEEMMRFLPSFQAVEYMRQGMSPKEACLEAIKRI---AKHFDGPDFEGAVVALNKKGEYGA 250 (263)
T ss_pred EEeeccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH---HHHcCcCCCcEEEEEEcCCCCEEE
Confidence 56789997776655543 2345899999988755444 333212344456777899985443
No 76
>cd06664 IscU_like Iron-sulfur cluster scaffold-like proteins. IscU_like and NifU_like proteins. IscU and NifU function as a scaffold for the assembly of [2Fe-2S] clusters before they are transferred to apo target proteins. They are highly conserved and play vital roles in the ISC and NIF systems of Fe-S protein maturation. NIF genes participate in nitrogen fixation in several isolated bacterial species. The NifU domain, however, is also found in bacteria that do not fix nitrogen, so it may have wider significance in the cell. Human IscU interacts with frataxin, the Friedreich ataxia gene product, and incorrectly spliced IscU has been shown to disrupt iron homeostasis in skeletal muscle and cause myopathy.
Probab=38.09 E-value=1.2e+02 Score=20.48 Aligned_cols=54 Identities=19% Similarity=0.232 Sum_probs=40.3
Q ss_pred EEE-EECCCCceeeeCeEEEcccHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHHH
Q psy7294 35 TLY-KGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEAYSVLKQCVHHMK 89 (123)
Q Consensus 35 ~Ly-~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~~mt~eEAi~L~~k~i~~a~ 89 (123)
.|| .+|. |.....+|.+.|-+...+-.-+=.++=.++|.+||.++...-+..+.
T Consensus 38 ~l~l~i~~-~~I~d~~f~~~GC~i~~Asas~~~~~~~Gk~~~ea~~i~~~~~~~~~ 92 (123)
T cd06664 38 TLYLKVED-GRITDAKFQGFGCAISIASASLLTELIKGKTLDEALKLLNKDIAMLD 92 (123)
T ss_pred EEEEEEcC-CEEEEEEEEecCcHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhc
Confidence 455 6666 88999999998877665555444555578899999999987777663
No 77
>TIGR02000 NifU_proper Fe-S cluster assembly protein NifU. Three different but partially homologous Fe-S cluster assembly systems have been described: Isc, Suf, and Nif. The latter is associated with donation of an Fe-S cluster to nitrogenase in a number of nitrogen-fixing species. NifU, described here, consists of an N-terminal domain (pfam01592) and a C-terminal domain (pfam01106). Homologs with an equivalent domain archictecture from Helicobacter and Campylobacter, however, are excluded from this model by a high trusted cutoff. The model, therefore, is specific for NifU involved in nitrogenase maturation. The related model TIGR01999 homologous to the N-terminus of this model describes IscU from the Isc system as in E. coli, Saccharomyces cerevisiae, and Homo sapiens.
Probab=38.06 E-value=1.1e+02 Score=24.44 Aligned_cols=54 Identities=22% Similarity=0.254 Sum_probs=40.1
Q ss_pred eEEE-EECC-CCceeeeCeEEEcccHHHHHHHHHccCCCCCCHHHHHHHHHHHHHH
Q psy7294 34 VTLY-KGDP-YGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEAYSVLKQCVHH 87 (123)
Q Consensus 34 P~Ly-~iD~-~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~~mt~eEAi~L~~k~i~~ 87 (123)
..|| .+|+ .|.+...+|.+.|-+...+-.=+=.++=.+.|.+||.++..+.+.+
T Consensus 39 i~l~l~vd~~~~~I~d~~F~~~GCais~ASAs~~~eli~Gktv~ea~~i~~~di~~ 94 (290)
T TIGR02000 39 LRLMLKVDPESDKIVDAGFQTFGCGSAIASSSALTEMIKGLTLDEALKVSNQDIAD 94 (290)
T ss_pred EEEEEEEcCCCCeEEEEEEEecCcHHHHHHHHHHHHHHcCCCHHHHHHhhHHHHHH
Confidence 4455 7776 7889999999999876666665555566788999998887655554
No 78
>COG4245 TerY Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain [General function prediction only]
Probab=37.20 E-value=66 Score=24.81 Aligned_cols=48 Identities=10% Similarity=0.097 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCC-eEEeeccccccccC
Q psy7294 75 QEAYSVLKQCVHHMKRRTVLSYPKFTVKVLDRTG-TVNVLQDLKYSDFK 122 (123)
Q Consensus 75 eEAi~L~~k~i~~a~~Rd~~s~~~~~V~vI~kdG-~~~l~~~~k~~~~~ 122 (123)
-||++.....|......|......++++|||=+| .+......--+||+
T Consensus 21 IealN~Glq~m~~~Lkqdp~Ale~v~lsIVTF~~~a~~~~pf~~~~nF~ 69 (207)
T COG4245 21 IEALNAGLQMMIDTLKQDPYALERVELSIVTFGGPARVIQPFTDAANFN 69 (207)
T ss_pred HHHHHHHHHHHHHHHHhChhhhheeEEEEEEecCcceEEechhhHhhcC
Confidence 3677777777777777788999999999999886 45444333334543
No 79
>PF14593 PH_3: PH domain; PDB: 1W1H_D 1W1D_A 1W1G_A 2VKI_A.
Probab=36.80 E-value=31 Score=23.59 Aligned_cols=17 Identities=29% Similarity=0.354 Sum_probs=13.8
Q ss_pred CceEEEEECCCCceeee
Q psy7294 32 FGVTLYKGDPYGFMLEV 48 (123)
Q Consensus 32 ~gP~Ly~iD~~Gs~~~~ 48 (123)
++|+|+++||.+...+.
T Consensus 36 d~PrL~Yvdp~~~~~KG 52 (104)
T PF14593_consen 36 DGPRLFYVDPKKMVLKG 52 (104)
T ss_dssp TTTEEEEEETTTTEEEE
T ss_pred cCCEEEEEECCCCeECc
Confidence 37999999999876553
No 80
>cd04448 DEP_PIKfyve DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in fungal RhoGEF (GDP/GTP exchange factor) PIKfyve-like proteins. PIKfyve contains N-terminal Fyve finger and DEP domains, a central chaperonin-like domain and a C-terminal PIPK (phosphatidylinositol phosphate kinase) domain. PIKfyve-like proteins are important phosphatidylinositol (3)-monophosphate (PtdIns(3)P)-5-kinases, producing PtdIns(3,5)P2, which plays a major role in multivesicular body (MVB) sorting and control of retrograde traffic from the vacuole back to the endosome and/or Golgi. PIKfyve itself has been shown to be play a role in regulating early-endosome-to-trans-Golgi network (TGN) retrograde trafficking.
Probab=36.28 E-value=72 Score=20.59 Aligned_cols=31 Identities=13% Similarity=0.079 Sum_probs=24.0
Q ss_pred ccHHHHHHHHHccCCCCCCHHHHHHHHHHHHHH
Q psy7294 55 INGFLTASLVDKYYKPDLTVQEAYSVLKQCVHH 87 (123)
Q Consensus 55 ~Gs~~~~~~Ld~~y~~~mt~eEAi~L~~k~i~~ 87 (123)
.|+.++..++++ .+-.|.+||+.++..=+..
T Consensus 30 ~GselVdWL~~~--~~~~~R~eAv~~gq~Ll~~ 60 (81)
T cd04448 30 LGKELVNWLIRQ--GKAATRVQAIAIGQALLDA 60 (81)
T ss_pred ChHHHHHHHHHc--CCCCCHHHHHHHHHHHHHC
Confidence 578888888877 3569999999998755543
No 81
>PF00538 Linker_histone: linker histone H1 and H5 family; InterPro: IPR005818 Histone proteins have central roles in both chromatin organisation (as structural units of the nucleosome) and gene regulation (as dynamic components that have a direct impact on DNA transcription and replication). Eukaryotic DNA wraps around a histone octamer to form a nucleosome, the first order of compaction of eukaryotic chromatin. The core histone octamer is composed of a central H3-H4 tetramer and two flanking H2A-H2B dimers. Each of the core histone contains a common structural motif, called the histone fold, which facilitates the interactions between the individual core histones. In addition to the core histones, there is a "linker histone" called H1 (or H5 in avian species). The linker histones present in all multicellular eukaryotes are the most divergent group of histones, with numerous cell type- and stage-specific variant. Linker histone H1 is an essential component of chromatin structure. H1 links nucleosomes into higher order structures. Histone H5 performs the same function as histone H1, and replaces H1 in certain cells. The structure of GH5, the globular domain of the linker histone H5 is known [, ]. The fold is similar to the DNA-binding domain of the catabolite gene activator protein, CAP, thus providing a possible model for the binding of GH5 to DNA. The linker histones, which do not contain the histone fold motif, are critical to the higher-order compaction of chromatin, because they bind to internucleosomal DNA and facilitate interactions between individual nucleosomes. In addition, H1 variants have been shown to be involved in the regulation of developmental genes. A common feature of this protein family is a tripartite structure in which a globular (H15) domain of about 80 amino acids is flanked by two less structured N- and C-terminal tails. The H15 domain is also characterised by high sequence homology among the family of linker histones. The highly conserved H15 domain is essential for the binding of H1 or H5 to the nucleosome. It consists of a three helix bundle (I-III), with a beta-hairpin at the C terminus. There is also a short three-residue stretch between helices I and II that is in the beta-strand conformation. Together with the C-terminal beta-hairpin, this strand forms the third strand of an antiparallel beta-sheet [, , , ]. Proteins known to contain a H15 domain are: - Eukaryotic histone H1. The histones H1 constitute a family with many variants, differing in their affinity for chromatin. Several variants are simultaneously present in a single cell. For example, the nucleated erythrocytes of birds contain both H1 and H5, the latter being an extreme variant of H1. - Eukaryotic MHYST family of histone acetyltransferase. Histone acetyltransferases transfer an acetyl group from acetyl-CoA to the epsylon- amino group of lysine within the basic NH2-termini of histones, which bind the acidic phosphates of DNA []. This entry represents the H15 domain.; GO: 0003677 DNA binding, 0006334 nucleosome assembly, 0000786 nucleosome, 0005634 nucleus; PDB: 2LSO_A 2RQP_A 1UHM_A 1UST_A 1GHC_A 1HST_A 1YQA_A 1USS_A.
Probab=35.34 E-value=84 Score=19.71 Aligned_cols=39 Identities=21% Similarity=0.163 Sum_probs=32.1
Q ss_pred EcccHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHHHhc
Q psy7294 53 IGINGFLTASLVDKYYKPDLTVQEAYSVLKQCVHHMKRR 91 (123)
Q Consensus 53 ~G~Gs~~~~~~Ld~~y~~~mt~eEAi~L~~k~i~~a~~R 91 (123)
.|+....+..+++..|+-+.+.+..-.+++++++.+.+.
T Consensus 20 ~GsS~~aI~kyI~~~y~~~~~~~~~~~~l~~aLk~~v~~ 58 (77)
T PF00538_consen 20 KGSSLQAIKKYIKAKYKVDLNPANFKSRLKRALKRGVEK 58 (77)
T ss_dssp SSEEHHHHHHHHHHHSSCCCCHTTHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHhcCcCCChHHHHHHHHHHHHHHHHC
Confidence 478888999999999977777767778888899888754
No 82
>PF11773 PulG: Type II secretory pathway pseudopilin ; InterPro: IPR021749 The secreton (type II secretion) and type IV pilus biogenesis branches of the general secretory pathway in Gram-negative bacteria share many features that suggest a common evolutionary origin. Five components of the secreton, the pseudopilins, are similar to subunits of type IV pili. Pseudopilin PulG is one of the secreton pseudopilins, and is found to assemble into pilus-like bundles []. PulG interacts with proteins H, I and J within the multi-protein complex as well as blocking extracellular secretion and reducing the amount of PulE protein as well as the amounts of PulL, PulM, PulC and PulD when G is over-expressed []. In Klebsiella the pilus-like structure is composed largely of PulG [].
Probab=35.14 E-value=64 Score=21.37 Aligned_cols=39 Identities=26% Similarity=0.273 Sum_probs=30.6
Q ss_pred CCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCC-CeEE
Q psy7294 71 DLTVQEAYSVLKQCVHHMKRRTVLSYPKFTVKVLDRT-GTVN 111 (123)
Q Consensus 71 ~mt~eEAi~L~~k~i~~a~~Rd~~s~~~~~V~vI~kd-G~~~ 111 (123)
.+-++|+++++.-|+..-.. -++.++++|.|...+ |+..
T Consensus 33 ~l~qqEvLnvA~MAvQT~Q~--~L~lNGv~V~v~~~~~~i~V 72 (82)
T PF11773_consen 33 ELQQQEVLNVAQMAVQTGQD--HLSLNGVEVQVERTQKGIIV 72 (82)
T ss_pred HHHHHHHHHHHHHHHHhCcc--eEEEcCeEEEEEEcCCeEEE
Confidence 46679999999999988765 488888999988765 4443
No 83
>cd04702 ASRGL1_like ASRGL1_like domains, a subfamily of the L-Asparaginase type 2-like enzymes. The wider family includes Glycosylasparaginase, Taspase 1 and L-Asparaginase type 2 enzymes. The proenzymes undergo autoproteolytic cleavage before a threonine to generate alpha and beta subunits. The threonine becomes the N-terminal residue of the beta subunit and is the catalytic residue. ASRGL1, or asparaginase-like 1, has been cloned from mammalian testis cDNA libraries. It has been identified as a sperm antigen that may induce the production of autoantibodies following obstruction of the male reproductive tract, e.g. vasectomy.
Probab=35.14 E-value=2.3e+02 Score=22.58 Aligned_cols=56 Identities=18% Similarity=0.148 Sum_probs=36.6
Q ss_pred eEEEcccHHHHHHHHHc----cCCCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCeEE
Q psy7294 50 YAYIGINGFLTASLVDK----YYKPDLTVQEAYSVLKQCVHHMKRRTVLSYPKFTVKVLDRTGTVN 111 (123)
Q Consensus 50 ~~a~G~Gs~~~~~~Ld~----~y~~~mt~eEAi~L~~k~i~~a~~Rd~~s~~~~~V~vI~kdG~~~ 111 (123)
+.++|.|-.++...+-. ..+.+++.+||.+-+.+-+. ++ . +...-+..||++|..-
T Consensus 179 ~s~TG~GE~iir~~~a~~v~~~m~~g~s~~eA~~~~i~~~~---~~--~-~g~gG~Iavd~~G~~~ 238 (261)
T cd04702 179 VSTTGHGESIMKVVLARLILDHMEQGGSAQEAADKAIEYMT---ER--V-KGTGGAIVLDSSGEVG 238 (261)
T ss_pred EEeeccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH---HH--c-CCceEEEEEeCCCCEE
Confidence 67899998887766554 33568999999886554443 32 1 2334566688988533
No 84
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=34.67 E-value=44 Score=19.20 Aligned_cols=30 Identities=23% Similarity=0.286 Sum_probs=20.3
Q ss_pred EcccHHHHHHHHHccC-CCCCCHHHHHHHHH
Q psy7294 53 IGINGFLTASLVDKYY-KPDLTVQEAYSVLK 82 (123)
Q Consensus 53 ~G~Gs~~~~~~Ld~~y-~~~mt~eEAi~L~~ 82 (123)
-|+...-+...+.+-. .++++.||.++.+.
T Consensus 13 LGy~~~e~~~av~~~~~~~~~~~e~~ik~aL 43 (47)
T PF07499_consen 13 LGYSKAEAQKAVSKLLEKPGMDVEELIKQAL 43 (47)
T ss_dssp TTS-HHHHHHHHHHHHHSTTS-HHHHHHHHH
T ss_pred cCCCHHHHHHHHHHhhcCCCCCHHHHHHHHH
Confidence 4777777777777766 88999888666544
No 85
>TIGR01280 xseB exodeoxyribonuclease VII, small subunit. This protein is the small subunit for exodeoxyribonuclease VII. Exodeoxyribonuclease VII is made of a complex of four small subunits to one large subunit. The complex degrades single-stranded DNA into large acid-insoluble oligonucleotides. These nucleotides are then degraded further into acid-soluble oligonucleotides.
Probab=33.88 E-value=98 Score=19.33 Aligned_cols=29 Identities=21% Similarity=0.362 Sum_probs=20.9
Q ss_pred HHHHHccCCCCCCHHHHHHHHHHHHHHHH
Q psy7294 61 ASLVDKYYKPDLTVQEAYSVLKQCVHHMK 89 (123)
Q Consensus 61 ~~~Ld~~y~~~mt~eEAi~L~~k~i~~a~ 89 (123)
..++.+--.+++++||++++-.+++..+.
T Consensus 11 e~Iv~~LE~~~l~Leesl~lyeeG~~L~k 39 (67)
T TIGR01280 11 EQIVQKLESGDLALEEALNLFERGMALAR 39 (67)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence 34445555689999999999777776654
No 86
>COG1891 Uncharacterized protein conserved in archaea [Function unknown]
Probab=33.66 E-value=73 Score=24.54 Aligned_cols=29 Identities=28% Similarity=0.288 Sum_probs=21.6
Q ss_pred CCCHHHHHHHHHHHHHHHHhcccccCCcEEEE
Q psy7294 71 DLTVQEAYSVLKQCVHHMKRRTVLSYPKFTVK 102 (123)
Q Consensus 71 ~mt~eEAi~L~~k~i~~a~~Rd~~s~~~~~V~ 102 (123)
--|.+||+++++.|.+.++. ++.+...|+
T Consensus 91 ~kn~~eA~e~m~~vvrAVkd---~d~~k~VVA 119 (235)
T COG1891 91 TKNEEEALEVMKNVVRAVKD---FDPSKKVVA 119 (235)
T ss_pred cccHHHHHHHHHHHHHHHhc---cCCCceEEe
Confidence 36889999999999999875 444444443
No 87
>PF03681 UPF0150: Uncharacterised protein family (UPF0150); InterPro: IPR005357 This family of small proteins is uncharacterised. In Q9A3L8 from SWISSPROT this domain is found next to a DNA binding helix-turn-helix domain IPR002145 from INTERPRO, which suggests that this is some kind of ligand binding domain.; PDB: 2DSY_C 2YZT_A 3KWR_A.
Probab=33.11 E-value=49 Score=18.71 Aligned_cols=19 Identities=21% Similarity=0.134 Sum_probs=14.9
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q psy7294 71 DLTVQEAYSVLKQCVHHMK 89 (123)
Q Consensus 71 ~mt~eEAi~L~~k~i~~a~ 89 (123)
+=|.+||++-++.++....
T Consensus 28 G~t~eea~~~~~eal~~~l 46 (48)
T PF03681_consen 28 GDTLEEALENAKEALELWL 46 (48)
T ss_dssp ESSHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHHHh
Confidence 3578999999999887653
No 88
>PRK12412 pyridoxal kinase; Reviewed
Probab=32.50 E-value=70 Score=24.65 Aligned_cols=38 Identities=18% Similarity=0.166 Sum_probs=31.8
Q ss_pred EcccHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHHHhc
Q psy7294 53 IGINGFLTASLVDKYYKPDLTVQEAYSVLKQCVHHMKRR 91 (123)
Q Consensus 53 ~G~Gs~~~~~~Ld~~y~~~mt~eEAi~L~~k~i~~a~~R 91 (123)
+|.|..|+-.++-... .+++.+||++.++.++..+.++
T Consensus 209 ~GaGD~f~aa~aa~l~-~g~~l~eA~~~A~~~~~~~i~~ 246 (268)
T PRK12412 209 HGAGCTYSAAITAELA-KGKPVKEAVKTAKEFITAAIRY 246 (268)
T ss_pred CchHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHH
Confidence 6999999888876644 5689999999999999888765
No 89
>COG3140 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.43 E-value=57 Score=20.16 Aligned_cols=25 Identities=12% Similarity=0.154 Sum_probs=20.6
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhccc
Q psy7294 69 KPDLTVQEAYSVLKQCVHHMKRRTV 93 (123)
Q Consensus 69 ~~~mt~eEAi~L~~k~i~~a~~Rd~ 93 (123)
-++||--|||.++-..+++-...+.
T Consensus 25 aeGmSsGEAIa~VA~elRe~hk~~~ 49 (60)
T COG3140 25 AEGMSSGEAIALVAQELRENHKGEN 49 (60)
T ss_pred HccccchhHHHHHHHHHHHHhcccc
Confidence 4689999999999999988876543
No 90
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid. Catalytic mechanism is believed to be via nucleotide elimination and readdition and is ATP modulated. AGE is structurally and mechanistically distinct from the other four types of epimerases. The AGE domain monomer is composed of an alpha(6)/alpha(6)-barrel, the structure of which is also found in glucoamylase and cellulase. The active form is a homodimer. The alignment also contains subtype III mannose 6-phosphate isomerases.
Probab=32.36 E-value=1.1e+02 Score=24.37 Aligned_cols=88 Identities=13% Similarity=-0.052 Sum_probs=53.2
Q ss_pred hcccccccccceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHHHhccccc
Q psy7294 16 NKTLALNSKKWTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEAYSVLKQCVHHMKRRTVLS 95 (123)
Q Consensus 16 ~~~~~~~~~~~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~~mt~eEAi~L~~k~i~~a~~Rd~~s 95 (123)
+..+|+-.+.++|+ ..|.....+|.-|+.....-.+...+ +..-.+-..|+-. -.+++++++++++.-+..+..-.
T Consensus 17 ~~~~~fw~~~~~d~-~~gg~~~~l~~~g~~~~~~k~~~~~a--r~i~~~a~a~~~~-~~~~~l~~A~~~~~fl~~~~~d~ 92 (384)
T cd00249 17 EDLLPFWLEAGLDR-EAGGFFECLDRDGQPFDTDRRLWLQA--RQVYCFAVAYLLG-WRPEWLEAAEHGLEYLDRHGRDP 92 (384)
T ss_pred HHHHHHHHhcCCCC-CCCCeEEEECCCCCCCCCCCeEEEec--HHHHHHHHHHHhc-CChhHHHHHHHHHHHHHHhCcCC
Confidence 67788888878897 45678889999998875433332222 2222222222211 24678899999988887654322
Q ss_pred C-CcEEEEEEcCCC
Q psy7294 96 Y-PKFTVKVLDRTG 108 (123)
Q Consensus 96 ~-~~~~V~vI~kdG 108 (123)
. +.+ ...++++|
T Consensus 93 ~~Gg~-~~~~~~~g 105 (384)
T cd00249 93 DHGGW-YFALDQDG 105 (384)
T ss_pred CCCCE-EEEEcCCC
Confidence 2 333 45567676
No 91
>PRK12413 phosphomethylpyrimidine kinase; Provisional
Probab=32.31 E-value=73 Score=23.99 Aligned_cols=39 Identities=18% Similarity=0.142 Sum_probs=31.3
Q ss_pred EEcccHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHHHhc
Q psy7294 52 YIGINGFLTASLVDKYYKPDLTVQEAYSVLKQCVHHMKRR 91 (123)
Q Consensus 52 a~G~Gs~~~~~~Ld~~y~~~mt~eEAi~L~~k~i~~a~~R 91 (123)
.+|.|..|+-.++-... .+++.+||++.++.++..+.++
T Consensus 204 ~~GaGDaf~a~~~~~l~-~g~~l~ea~~~A~~~~~~~l~~ 242 (253)
T PRK12413 204 NIGAGCTFASSIASQLV-KGKSPLEAVKNSKDFVYQAIQQ 242 (253)
T ss_pred CCChHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHH
Confidence 58999988877776644 4788999999998888887764
No 92
>PHA01082 putative transcription regulator
Probab=31.93 E-value=56 Score=23.39 Aligned_cols=26 Identities=23% Similarity=0.276 Sum_probs=21.0
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHhcc
Q psy7294 67 YYKPDLTVQEAYSVLKQCVHHMKRRT 92 (123)
Q Consensus 67 ~y~~~mt~eEAi~L~~k~i~~a~~Rd 92 (123)
+|.=++|+|||-+|.-|.++.+.+-|
T Consensus 26 efeCgLsveeaa~LCfKsVrtVk~WD 51 (133)
T PHA01082 26 EFECGLSVEEAAKLCFKTVSEVKQWD 51 (133)
T ss_pred hhccCccHHHHHHHHHHhHHHHhhcc
Confidence 34458999999999888888887755
No 93
>COG2840 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.70 E-value=2.1e+02 Score=21.65 Aligned_cols=58 Identities=22% Similarity=0.266 Sum_probs=42.3
Q ss_pred eeCeEEEcccHHHHHHHHHccCCC-------CCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCe
Q psy7294 47 EVPYAYIGINGFLTASLVDKYYKP-------DLTVQEAYSVLKQCVHHMKRRTVLSYPKFTVKVLDRTGT 109 (123)
Q Consensus 47 ~~~~~a~G~Gs~~~~~~Ld~~y~~-------~mt~eEAi~L~~k~i~~a~~Rd~~s~~~~~V~vI~kdG~ 109 (123)
+.+|...|........+=.-.|.+ +||.+||..++..-|..+..+ .-..|.||+--|-
T Consensus 72 ~~~y~r~g~~~~v~~kLrrG~~~~e~~LDLHG~tq~eAr~~L~~Fi~~a~~~-----~~rcv~VihGkG~ 136 (184)
T COG2840 72 PLSYRREGLQKNVLKKLRRGRYPPEARLDLHGLTQEEARQELGAFIARARAE-----GLRCVLVIHGKGR 136 (184)
T ss_pred cccccccccChHHHHHHhcCCCCcceeeeccCCCHHHHHHHHHHHHHHHHHh-----CCcEEEEEeCCCc
Confidence 345666777776666655556654 599999999999999988765 5567888876663
No 94
>TIGR00112 proC pyrroline-5-carboxylate reductase. This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs.
Probab=31.63 E-value=79 Score=24.17 Aligned_cols=39 Identities=18% Similarity=0.091 Sum_probs=30.1
Q ss_pred EEEcccHHHHHHHHHc----cCCCCCCHHHHHHHHHHHHHHHH
Q psy7294 51 AYIGINGFLTASLVDK----YYKPDLTVQEAYSVLKQCVHHMK 89 (123)
Q Consensus 51 ~a~G~Gs~~~~~~Ld~----~y~~~mt~eEAi~L~~k~i~~a~ 89 (123)
..+|+|-.|+.-+++. .-+.+++.++|.+++.+.+.-+.
T Consensus 150 alsgsgPA~~~~~~~al~~~~v~~Gl~~~~A~~lv~~~~~G~a 192 (245)
T TIGR00112 150 ALSGSGPAYVFLFIEALADAGVKQGLPRELALELAAQTVKGAA 192 (245)
T ss_pred hhccCcHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 3478888877777766 34579999999999998887543
No 95
>PRK14067 exodeoxyribonuclease VII small subunit; Provisional
Probab=31.16 E-value=1.1e+02 Score=19.97 Aligned_cols=29 Identities=21% Similarity=0.315 Sum_probs=20.5
Q ss_pred HHHHHccCCCCCCHHHHHHHHHHHHHHHH
Q psy7294 61 ASLVDKYYKPDLTVQEAYSVLKQCVHHMK 89 (123)
Q Consensus 61 ~~~Ld~~y~~~mt~eEAi~L~~k~i~~a~ 89 (123)
..++.+--.+++++|+++++-.+++..+.
T Consensus 17 EeIV~~LE~~~l~Lees~~lyeeG~~L~k 45 (80)
T PRK14067 17 QEIVDALEGGDLPLEESVALYKEGLGLAR 45 (80)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence 34444455689999999998777776654
No 96
>PF05924 SAMP: SAMP Motif; InterPro: IPR009224 This short region is found repeated in the mid region of the adenomatous polyposis proteins (APCs). This motif binds axin [].; GO: 0008013 beta-catenin binding, 0016055 Wnt receptor signaling pathway; PDB: 1EMU_B 2RQU_B.
Probab=30.60 E-value=23 Score=17.40 Aligned_cols=12 Identities=17% Similarity=0.570 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHh
Q psy7294 79 SVLKQCVHHMKR 90 (123)
Q Consensus 79 ~L~~k~i~~a~~ 90 (123)
+|+.+||..|+-
T Consensus 4 eiL~~CI~sAmP 15 (20)
T PF05924_consen 4 EILQECIGSAMP 15 (20)
T ss_dssp HHHHHHHHCTS-
T ss_pred HHHHHHHHHhcc
Confidence 899999988763
No 97
>cd01262 PH_PDK1 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. PDK1 contains an N-terminal serine/threonine kinase domain followed by a PH domain. Following binding of the PH domain to PtdIns(3,4,5)P3 and PtdIns(3,4)P2, PDK1 activates kinases such as Akt (PKB). PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=30.12 E-value=36 Score=22.83 Aligned_cols=15 Identities=27% Similarity=0.310 Sum_probs=11.7
Q ss_pred ceEEEEECCCCceee
Q psy7294 33 GVTLYKGDPYGFMLE 47 (123)
Q Consensus 33 gP~Ly~iD~~Gs~~~ 47 (123)
+|+|+++||.--..+
T Consensus 25 ~PrL~yvdp~~~~~K 39 (89)
T cd01262 25 GPRLIYVDPVKKVVK 39 (89)
T ss_pred CceEEEEcCCcCeEE
Confidence 899999999854433
No 98
>cd01169 HMPP_kinase 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate kinase (HMPP-kinase) catalyzes two consecutive phosphorylation steps in the thiamine phosphate biosynthesis pathway, leading to the synthesis of vitamin B1. The first step is the phosphorylation of the hydroxyl group of HMP to form 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate (HMP-P) and then the phophorylation of HMP-P to form 4-amino-5-hydroxymethyl-2-methyl-pyrimidine pyrophosphate (HMP-PP), which is the substrate for the thiamine synthase coupling reaction.
Probab=29.97 E-value=88 Score=23.18 Aligned_cols=40 Identities=20% Similarity=0.213 Sum_probs=31.5
Q ss_pred eEEEcccHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHHHh
Q psy7294 50 YAYIGINGFLTASLVDKYYKPDLTVQEAYSVLKQCVHHMKR 90 (123)
Q Consensus 50 ~~a~G~Gs~~~~~~Ld~~y~~~mt~eEAi~L~~k~i~~a~~ 90 (123)
...+|.|..|+-.++-... .+++.+||++++...+..+.+
T Consensus 201 ~~~~GaGD~f~a~l~a~l~-~g~~~~~A~~~A~~~~~~~i~ 240 (242)
T cd01169 201 KNTHGTGCTLSSAIAANLA-KGLSLEEAVREAKEYVTQAIR 240 (242)
T ss_pred CCCCChHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHH
Confidence 3347999888887776654 478899999999999988765
No 99
>PRK07105 pyridoxamine kinase; Validated
Probab=29.51 E-value=91 Score=24.11 Aligned_cols=41 Identities=15% Similarity=0.133 Sum_probs=32.6
Q ss_pred eEEEcccHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHHHhc
Q psy7294 50 YAYIGINGFLTASLVDKYYKPDLTVQEAYSVLKQCVHHMKRR 91 (123)
Q Consensus 50 ~~a~G~Gs~~~~~~Ld~~y~~~mt~eEAi~L~~k~i~~a~~R 91 (123)
...+|.|..|+-.++-... .+.+.+||++.+..++..+..+
T Consensus 215 ~~~~GaGD~f~aa~~~~l~-~g~~l~~av~~A~~~~~~~i~~ 255 (284)
T PRK07105 215 AHYPGTGDIFTSVITGSLL-QGDSLPIALDRAVQFIEKGIRA 255 (284)
T ss_pred CCcCChhHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHH
Confidence 3458999999888876654 4789999999999888877765
No 100
>PRK00977 exodeoxyribonuclease VII small subunit; Provisional
Probab=29.40 E-value=1.2e+02 Score=19.58 Aligned_cols=30 Identities=17% Similarity=0.335 Sum_probs=21.2
Q ss_pred HHHHHccCCCCCCHHHHHHHHHHHHHHHHh
Q psy7294 61 ASLVDKYYKPDLTVQEAYSVLKQCVHHMKR 90 (123)
Q Consensus 61 ~~~Ld~~y~~~mt~eEAi~L~~k~i~~a~~ 90 (123)
..++.+-=.+++++|+++++-.+++..+.+
T Consensus 20 EeIv~~LE~~~l~Lees~~lyeeg~~L~k~ 49 (80)
T PRK00977 20 EEIVTRLESGDLPLEESLAAFERGVALARQ 49 (80)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence 344444455799999999998777776643
No 101
>PF14769 CLAMP: Flagellar C1a complex subunit C1a-32
Probab=29.08 E-value=89 Score=20.72 Aligned_cols=30 Identities=10% Similarity=0.356 Sum_probs=23.6
Q ss_pred HHHHHHHccCCCCCCHHHHHHHHHHHHHHH
Q psy7294 59 LTASLVDKYYKPDLTVQEAYSVLKQCVHHM 88 (123)
Q Consensus 59 ~~~~~Ld~~y~~~mt~eEAi~L~~k~i~~a 88 (123)
++..++++..++.++.+|+++..++.+..-
T Consensus 23 i~~~ll~~~i~~~~~~~~~~~~fk~~l~~~ 52 (101)
T PF14769_consen 23 ILKELLEKNIEKGMSLEDSFKYFKELLLRH 52 (101)
T ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHHh
Confidence 556667756669999999999999988544
No 102
>TIGR00687 pyridox_kin pyridoxal kinase. ThiD and related proteins form an outgroup.
Probab=28.94 E-value=92 Score=24.06 Aligned_cols=39 Identities=21% Similarity=0.266 Sum_probs=31.8
Q ss_pred EcccHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHHHhcc
Q psy7294 53 IGINGFLTASLVDKYYKPDLTVQEAYSVLKQCVHHMKRRT 92 (123)
Q Consensus 53 ~G~Gs~~~~~~Ld~~y~~~mt~eEAi~L~~k~i~~a~~Rd 92 (123)
+|.|-.|+-.++-... .+.+.+||++.+..++..+.++-
T Consensus 219 ~GaGD~f~A~~l~~l~-~g~~~~~al~~A~~~v~~~l~~t 257 (286)
T TIGR00687 219 VGTGDLIAALLLATLL-HGNSLKEALEKTVSAVYHVLVTT 257 (286)
T ss_pred CChHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHHH
Confidence 8999999888887654 47789999999998877776653
No 103
>PRK14063 exodeoxyribonuclease VII small subunit; Provisional
Probab=28.84 E-value=1.3e+02 Score=19.35 Aligned_cols=28 Identities=32% Similarity=0.375 Sum_probs=20.0
Q ss_pred HHHHccCCCCCCHHHHHHHHHHHHHHHH
Q psy7294 62 SLVDKYYKPDLTVQEAYSVLKQCVHHMK 89 (123)
Q Consensus 62 ~~Ld~~y~~~mt~eEAi~L~~k~i~~a~ 89 (123)
.++.+--.+++++|+++++-.+++..+.
T Consensus 16 ~Iv~~LE~~~l~Leesl~lyeeG~~L~k 43 (76)
T PRK14063 16 HLVSKLEQGDVPLEEAISYFKEGMELSK 43 (76)
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence 4444455689999999998777766554
No 104
>PRK14068 exodeoxyribonuclease VII small subunit; Provisional
Probab=28.83 E-value=1.2e+02 Score=19.48 Aligned_cols=28 Identities=11% Similarity=0.255 Sum_probs=20.0
Q ss_pred HHHHccCCCCCCHHHHHHHHHHHHHHHH
Q psy7294 62 SLVDKYYKPDLTVQEAYSVLKQCVHHMK 89 (123)
Q Consensus 62 ~~Ld~~y~~~mt~eEAi~L~~k~i~~a~ 89 (123)
.++.+--.+++++|+++++-.+++..+.
T Consensus 17 ~IV~~LE~gdl~Leesl~lyeeG~~L~k 44 (76)
T PRK14068 17 QIVQKLDNETVSLEESLDLYQRGMKLSA 44 (76)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 3444445579999999998777776654
No 105
>PRK14070 exodeoxyribonuclease VII small subunit; Provisional
Probab=28.74 E-value=1.3e+02 Score=19.02 Aligned_cols=28 Identities=18% Similarity=0.408 Sum_probs=19.7
Q ss_pred HHHHccCCCCCCHHHHHHHHHHHHHHHH
Q psy7294 62 SLVDKYYKPDLTVQEAYSVLKQCVHHMK 89 (123)
Q Consensus 62 ~~Ld~~y~~~mt~eEAi~L~~k~i~~a~ 89 (123)
.++++--..++++++++++-.+++..+.
T Consensus 6 eIV~~LE~gel~Leesl~lyeeG~~L~k 33 (69)
T PRK14070 6 EIVNRLENEDLPLEESIKLFERGVELYR 33 (69)
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence 3444445578999999988777776554
No 106
>PF02831 gpW: gpW; InterPro: IPR004174 GpW is a 68 residue protein known to be present in phage particles. Extracts of phage-infected cells lacking GpW contain DNA-filled heads, and active tails, but no infectious virions. GpW is required for the addition of GpFII to the head, which is, in turn, required for the attachment of tails. Since GpFII and tails are known to be attached at the connector, GpW is also likely to assemble at this site. The addition of GpW to filled heads increases the DNase resistance of the packaged DNA, suggesting that GpW either forms a plug at the connector to prevent ejection of the DNA, or binds directly to the DNA. The large number of positively charged residues in GpW (its calculated pI is 10.8) is consistent with a role in DNA interaction [].; GO: 0019067 viral assembly, maturation, egress, and release; PDB: 2L6Q_A 2L6R_A 1HYW_A.
Probab=28.21 E-value=1.1e+02 Score=19.41 Aligned_cols=34 Identities=24% Similarity=0.368 Sum_probs=21.5
Q ss_pred CCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCeEEee
Q psy7294 72 LTVQEAYSVLKQCVHHMKRRTVLSYPKFTVKVLDRTGTVNVL 113 (123)
Q Consensus 72 mt~eEAi~L~~k~i~~a~~Rd~~s~~~~~V~vI~kdG~~~l~ 113 (123)
||.+|.+.-++.|+..+ .+|..+ |. |+.|| +.++
T Consensus 1 Mt~~~~L~~a~~A~h~L-----~tG~~v-vs-v~~dg-rsV~ 34 (68)
T PF02831_consen 1 MTTQEQLAEARAAYHDL-----LTGQRV-VS-VQGDG-RSVT 34 (68)
T ss_dssp --CHHHHHHHHHHHHHH-----HCS-SE-EE-EEETT-EEEE
T ss_pred CchHHHHHHHHHHHHHH-----HhCCce-eE-eecCC-eEEE
Confidence 66778778788888777 455554 33 78899 5544
No 107
>PRK10465 hydrogenase 2-specific chaperone; Provisional
Probab=28.14 E-value=43 Score=24.83 Aligned_cols=55 Identities=22% Similarity=0.360 Sum_probs=41.4
Q ss_pred eEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHHH
Q psy7294 34 VTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEAYSVLKQCVHHMK 89 (123)
Q Consensus 34 P~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~~mt~eEAi~L~~k~i~~a~ 89 (123)
-.+.-.=|+|++.-.-..--|.|.+.+.+++--- .+-++.++|+.++..|++.+.
T Consensus 81 ~k~~~~lP~G~~~F~~~~~~~~G~y~sCSLfSPm-~~f~~~~~A~~~A~a~l~~ll 135 (159)
T PRK10465 81 EKLGLQLPYGTMTFTVGELDGVSQYLSCSLMSPL-DPSLSAEQGVRLADDCARMLL 135 (159)
T ss_pred ceEEEecCCceEEEEeecCCCCcceeEeeccCCc-ccccCHHHHHHHHHHHHHHHh
Confidence 3444455888887777777788888888765332 356899999999999999885
No 108
>PRK14064 exodeoxyribonuclease VII small subunit; Provisional
Probab=28.06 E-value=1.4e+02 Score=19.20 Aligned_cols=28 Identities=7% Similarity=0.262 Sum_probs=19.8
Q ss_pred HHHHccCCCCCCHHHHHHHHHHHHHHHH
Q psy7294 62 SLVDKYYKPDLTVQEAYSVLKQCVHHMK 89 (123)
Q Consensus 62 ~~Ld~~y~~~mt~eEAi~L~~k~i~~a~ 89 (123)
.++.+--..++++||++++-.+++..+.
T Consensus 17 ~IV~~LE~~~l~Leesl~~ye~G~~L~k 44 (75)
T PRK14064 17 TIVEALENGSASLEDSLDMYQKGIELTK 44 (75)
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence 3444444679999999999777776554
No 109
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=27.94 E-value=46 Score=26.91 Aligned_cols=19 Identities=26% Similarity=0.331 Sum_probs=14.5
Q ss_pred CCHHHHHHHHHHHHHHHHh
Q psy7294 72 LTVQEAYSVLKQCVHHMKR 90 (123)
Q Consensus 72 mt~eEAi~L~~k~i~~a~~ 90 (123)
||.+||++|+.+|...+..
T Consensus 204 mti~EAv~Lvl~a~~~~~~ 222 (293)
T PF02719_consen 204 MTIEEAVQLVLQAAALAKG 222 (293)
T ss_dssp E-HHHHHHHHHHHHHH--T
T ss_pred ecHHHHHHHHHHHHhhCCC
Confidence 9999999999999987754
No 110
>cd04512 Ntn_Asparaginase_2_like Ntn-hydrolase superfamily, L-Asparaginase type 2-like enzymes. This family includes Glycosylasparaginase, Taspase 1 and L-Asparaginase type 2 enzymes. Glycosylasparaginase catalyzes the hydrolysis of the glycosylamide bond of asparagine-linked glycoprotein. Taspase1 catalyzes the cleavage of the Mix Lineage Leukemia (MLL) nuclear protein and transcription factor TFIIA. L-Asparaginase type 2 hydrolyzes L-asparagine to L-aspartate and ammonia. The proenzymes of this family undergo autoproteolytic cleavage before a threonine to generate alpha and beta subunits. The threonine becomes the N-terminal residue of the beta subunit and is the catalytic residue.
Probab=27.48 E-value=3.1e+02 Score=21.65 Aligned_cols=57 Identities=11% Similarity=0.079 Sum_probs=36.9
Q ss_pred eEEEcccHHHHHHHHHc----cCCCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCeEEe
Q psy7294 50 YAYIGINGFLTASLVDK----YYKPDLTVQEAYSVLKQCVHHMKRRTVLSYPKFTVKVLDRTGTVNV 112 (123)
Q Consensus 50 ~~a~G~Gs~~~~~~Ld~----~y~~~mt~eEAi~L~~k~i~~a~~Rd~~s~~~~~V~vI~kdG~~~l 112 (123)
+.++|.|-.++...+-. ..+..++.+||.+-+.+-+. ++ .+...-+..+|++|..-.
T Consensus 176 ~s~TG~GE~iir~~~a~~v~~~~~~g~~~~~A~~~~i~~~~---~~---~~~~~G~Ia~d~~G~~~~ 236 (248)
T cd04512 176 ASTTGHGEAIIRTVLARRVVELMEQGMAAQAAAETAVEELG---SL---KGGQGGVIAVDSKGEFGA 236 (248)
T ss_pred EEeeecHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH---hh---cCCeEEEEEEeCCCCEEE
Confidence 66799998877766554 33567999999876544443 32 223345777899986444
No 111
>cd04450 DEP_RGS7-like DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in RGS (regulator of G-protein signaling) proteins of the subfamily R7. This subgroup contains RGS7, RGS6, RGS9 and RGS11. They share a common domain architecture, containing, beside the RGS domain, a DEP domain and a GGL (G-protein gamma subunit-like ) domain. RGS proteins are GTPase-activating (GAP) proteins of heterotrimeric G proteins by increasing the rate of GTP hydrolysis of the alpha subunit. The fungal homologs, like yeast Sst2, share a related common domain architecture, containing RGS and DEP domains. Sst2 has been identified as the principal regulator of mating pheromone signaling and recently the DEP domain of Sst2 has been shown to be necessary and sufficient to mediate receptor interaction.
Probab=26.82 E-value=1.4e+02 Score=19.24 Aligned_cols=38 Identities=24% Similarity=0.264 Sum_probs=27.3
Q ss_pred eeeCeEEEcccHHHHHHHHHccCCCCCCHHHHHHHHHHHHHH
Q psy7294 46 LEVPYAYIGINGFLTASLVDKYYKPDLTVQEAYSVLKQCVHH 87 (123)
Q Consensus 46 ~~~~~~a~G~Gs~~~~~~Ld~~y~~~mt~eEAi~L~~k~i~~ 87 (123)
...+++-+ |+..+..+++.. .-.+.+||++++..-++.
T Consensus 23 ~~~~~~F~--G~~~v~WL~~~~--~~~~~~EA~~~~~~ll~~ 60 (88)
T cd04450 23 TTVPYAFT--GKAIVQWLMDCT--DVVDPSEALEIAALFVKY 60 (88)
T ss_pred eEcCceeE--hHHHHHHHHHCC--CCCCHHHHHHHHHHHHHC
Confidence 34455555 677888888774 349999999998766644
No 112
>PRK14066 exodeoxyribonuclease VII small subunit; Provisional
Probab=26.70 E-value=1.5e+02 Score=19.04 Aligned_cols=28 Identities=18% Similarity=0.363 Sum_probs=19.7
Q ss_pred HHHHccCCCCCCHHHHHHHHHHHHHHHH
Q psy7294 62 SLVDKYYKPDLTVQEAYSVLKQCVHHMK 89 (123)
Q Consensus 62 ~~Ld~~y~~~mt~eEAi~L~~k~i~~a~ 89 (123)
.++++--..++++|+++++-.++++.+.
T Consensus 15 ~IV~~LE~g~l~Leesl~lyeeG~~L~k 42 (75)
T PRK14066 15 EVVKKLEGGELSLDDSLKAFEEGVKHAA 42 (75)
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence 3444445679999999998777766554
No 113
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=26.70 E-value=66 Score=21.76 Aligned_cols=27 Identities=26% Similarity=0.482 Sum_probs=17.2
Q ss_pred ccHHHHHHHHHccCCCCCCHHHHHHHHHH
Q psy7294 55 INGFLTASLVDKYYKPDLTVQEAYSVLKQ 83 (123)
Q Consensus 55 ~Gs~~~~~~Ld~~y~~~mt~eEAi~L~~k 83 (123)
..+.++..+|-.. .+++.+||++.++.
T Consensus 91 RS~~v~~~yl~~~--~~~~~~~A~~~v~~ 117 (138)
T smart00195 91 RSATLIIAYLMKY--RNLSLNDAYDFVKD 117 (138)
T ss_pred hHHHHHHHHHHHH--hCCCHHHHHHHHHH
Confidence 3344455554433 47899999999763
No 114
>COG0360 RpsF Ribosomal protein S6 [Translation, ribosomal structure and biogenesis]
Probab=26.32 E-value=1.3e+02 Score=20.78 Aligned_cols=45 Identities=11% Similarity=0.189 Sum_probs=31.8
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCeEEeecccccc
Q psy7294 69 KPDLTVQEAYSVLKQCVHHMKRRTVLSYPKFTVKVLDRTGTVNVLQDLKYS 119 (123)
Q Consensus 69 ~~~mt~eEAi~L~~k~i~~a~~Rd~~s~~~~~V~vI~kdG~~~l~~~~k~~ 119 (123)
+|+++.|+.-.++.+.-..+.. ++-+|.-+..-|.|.|..++|+.
T Consensus 10 ~p~~see~~~~~ve~~~~~l~~------~gg~i~~~e~wG~R~LAY~IkK~ 54 (112)
T COG0360 10 RPDLSEEQVAALVEKYKGVLTN------NGGEIHKVEDWGKRRLAYPIKKL 54 (112)
T ss_pred CCCCCHHHHHHHHHHHHHHHHH------CCCEEEEehhhhhhhhcceeccc
Confidence 6899987776666655544432 35566777777999999888873
No 115
>PRK12616 pyridoxal kinase; Reviewed
Probab=26.32 E-value=1.1e+02 Score=23.72 Aligned_cols=38 Identities=16% Similarity=0.162 Sum_probs=30.7
Q ss_pred EcccHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHHHhc
Q psy7294 53 IGINGFLTASLVDKYYKPDLTVQEAYSVLKQCVHHMKRR 91 (123)
Q Consensus 53 ~G~Gs~~~~~~Ld~~y~~~mt~eEAi~L~~k~i~~a~~R 91 (123)
+|.|..|+-.++-... .+++.+||++.++.++..+.++
T Consensus 212 ~GaGD~fsaalaa~l~-~g~~l~~Av~~A~~~~~~~i~~ 249 (270)
T PRK12616 212 HGAGCTFSAAVTAELA-KGSEVKEAIYAAKEFITAAIKE 249 (270)
T ss_pred CcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHH
Confidence 7999999888876644 4678999999998888877764
No 116
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=26.21 E-value=79 Score=25.49 Aligned_cols=40 Identities=13% Similarity=-0.025 Sum_probs=32.6
Q ss_pred eEEEcccHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHHH
Q psy7294 50 YAYIGINGFLTASLVDKYYKPDLTVQEAYSVLKQCVHHMK 89 (123)
Q Consensus 50 ~~a~G~Gs~~~~~~Ld~~y~~~mt~eEAi~L~~k~i~~a~ 89 (123)
.+-.|+|..++..++|..-+-+++.|+|+.++.+.++.+.
T Consensus 183 t~l~Gs~pa~v~~~~ealv~~G~~~e~A~~~~~~~~~g~~ 222 (314)
T TIGR00465 183 AVLCGGLTALIKAGFDTLVEAGYQPELAYFETVHELKLIV 222 (314)
T ss_pred hhHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 3457899999999999988889999999999777776554
No 117
>CHL00123 rps6 ribosomal protein S6; Validated
Probab=26.15 E-value=2e+02 Score=19.02 Aligned_cols=44 Identities=16% Similarity=0.203 Sum_probs=28.6
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCeEEeeccccc
Q psy7294 69 KPDLTVQEAYSVLKQCVHHMKRRTVLSYPKFTVKVLDRTGTVNVLQDLKY 118 (123)
Q Consensus 69 ~~~mt~eEAi~L~~k~i~~a~~Rd~~s~~~~~V~vI~kdG~~~l~~~~k~ 118 (123)
+|+++.++.-+++.+ +..... ..+-+|.-++.=|.+.|..++|+
T Consensus 15 ~p~l~e~~~~~~~~~-~~~~i~-----~~gg~i~~~~~wG~r~LAY~I~k 58 (97)
T CHL00123 15 KPDLNEEELLKWIEN-YKKLLR-----KRGAKNISVQNRGKRKLSYKINK 58 (97)
T ss_pred CCCCCHHHHHHHHHH-HHHHHH-----HCCCEEEEEEeecCeeeeEEcCC
Confidence 588988876666554 433322 23445555677789999888776
No 118
>COG3227 LasB Zinc metalloprotease (elastase) [Amino acid transport and metabolism]
Probab=26.07 E-value=1.1e+02 Score=26.75 Aligned_cols=42 Identities=14% Similarity=0.240 Sum_probs=30.9
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCeEE
Q psy7294 67 YYKPDLTVQEAYSVLKQCVHHMKRRTVLSYPKFTVKVLDRTGTVN 111 (123)
Q Consensus 67 ~y~~~mt~eEAi~L~~k~i~~a~~Rd~~s~~~~~V~vI~kdG~~~ 111 (123)
.-++.++.|+|++++++.+..-.. ...+..+..+..+++.-.
T Consensus 125 ~~t~~is~e~Aia~A~k~~~~~~~---~e~~k~e~~v~~~n~~~~ 166 (507)
T COG3227 125 TNTPKISAEQAIAIARKQFGYERL---TESPKAELMVRVKNGSAR 166 (507)
T ss_pred cCCCccCHHHHHHHHHHhhccccc---ccCcccceEEEecCCeeE
Confidence 346889999999999999875543 566777777766676433
No 119
>TIGR00097 HMP-P_kinase phosphomethylpyrimidine kinase. This model represents phosphomethylpyrimidine kinase, the ThiD protein of thiamine biosynthesis. The protein is commonly observed within operons containing other thiamine biosynthesis genes. Numerous examples are fusion proteins with other thiamine-biosynthetic domains. Saccaromyces has three recent paralogs, two of which are isofunctional and score above the trusted cutoff. The third shows a longer branch length in a phylogenetic tree and scores below the trusted cutoff, as do putative second copies in a number of species.
Probab=25.77 E-value=1.1e+02 Score=23.18 Aligned_cols=39 Identities=23% Similarity=0.210 Sum_probs=31.9
Q ss_pred EEcccHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHHHhc
Q psy7294 52 YIGINGFLTASLVDKYYKPDLTVQEAYSVLKQCVHHMKRR 91 (123)
Q Consensus 52 a~G~Gs~~~~~~Ld~~y~~~mt~eEAi~L~~k~i~~a~~R 91 (123)
.+|.|..|+-.++-... .+++.+||++.+..++..+.++
T Consensus 202 ~~GaGD~f~aalaa~la-~g~~l~eA~~~A~~~~~~~i~~ 240 (254)
T TIGR00097 202 THGTGCTLSAAIAANLA-KGLSLKEAVKEAKEFVTGAIRY 240 (254)
T ss_pred CCChHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHH
Confidence 58999988888776644 4789999999999998888765
No 120
>PF05589 DUF768: Protein of unknown function (DUF768); InterPro: IPR008486 This family consists of several uncharacterised hypothetical proteins from Rhizobium loti (Mesorhizobium loti).
Probab=25.36 E-value=1.7e+02 Score=18.39 Aligned_cols=37 Identities=5% Similarity=-0.068 Sum_probs=26.7
Q ss_pred ccHHHHHHHHHccCCCCCC--HHHHHHHHHHHHHHHHhc
Q psy7294 55 INGFLTASLVDKYYKPDLT--VQEAYSVLKQCVHHMKRR 91 (123)
Q Consensus 55 ~Gs~~~~~~Ld~~y~~~mt--~eEAi~L~~k~i~~a~~R 91 (123)
.|..|...++.++..+... .--+-+|+.+|+..|...
T Consensus 4 r~~~Fl~~WI~e~V~~~~~~d~is~~~La~kl~adA~a~ 42 (64)
T PF05589_consen 4 RGIEFLDSWIAENVPDTPKADIISAAELAEKLFADAEAA 42 (64)
T ss_pred hHHHHHHHHHHhcCCCccccchhhHHHHHHHHHHHHHHc
Confidence 4677888889888854322 334578899999998763
No 121
>cd00173 SH2 Src homology 2 domains; Signal transduction, involved in recognition of phosphorylated tyrosine (pTyr). SH2 domains typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites.
Probab=25.36 E-value=1.8e+02 Score=18.07 Aligned_cols=47 Identities=17% Similarity=0.135 Sum_probs=28.4
Q ss_pred cCCCCCCHHHHHHHHHHHHHHH-Hhcccc-cCCcEEEEEEcCCCeEEee
Q psy7294 67 YYKPDLTVQEAYSVLKQCVHHM-KRRTVL-SYPKFTVKVLDRTGTVNVL 113 (123)
Q Consensus 67 ~y~~~mt~eEAi~L~~k~i~~a-~~Rd~~-s~~~~~V~vI~kdG~~~l~ 113 (123)
.|...|+.+||.+++..+-.-. .=|+-. ..+.+.+.+...+.++...
T Consensus 2 w~~g~i~r~~Ae~~L~~~~~G~FLiR~s~~~~~~~~Lsv~~~~~v~H~~ 50 (94)
T cd00173 2 WYHGPISREEAEELLKKKPDGTFLVRDSESSPGDYVLSVRVKGKVKHYR 50 (94)
T ss_pred ccccCCCHHHHHHHHhcCCCceEEEEecCCCCCCEEEEEEECCEEEEEE
Confidence 3678999999999988621111 112211 3566778777776554443
No 122
>TIGR03419 NifU_clost FeS cluster assembly scaffold protein NifU, Clostridium type. NifU and NifS form a pair of iron-sulfur (FeS) cluster biosynthesis proteins much simpler than the ISC and SUF systems. Members of this protein family are a distinct group of NifU-like proteins, found always to a NifS-like protein and restricted to species that lack a SUF system. Typically, NIF systems service a smaller number of FeS-containing proteins than do ISC or SUF. Members of this particular branch typically are found, almost half the time, near the mnmA gene, involved in the carboxymethylaminomethyl modification of U34 in some tRNAs (see GenProp0704). While other NifU proteins are associated with nitrogen fixation, this family is not.
Probab=25.29 E-value=2e+02 Score=19.69 Aligned_cols=54 Identities=15% Similarity=0.267 Sum_probs=39.2
Q ss_pred EEE-EECCCCceeeeCeEEEcccHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHHH
Q psy7294 35 TLY-KGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEAYSVLKQCVHHMK 89 (123)
Q Consensus 35 ~Ly-~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~~mt~eEAi~L~~k~i~~a~ 89 (123)
.|| .+|. |.....+|.+.|-+...+-.-+=.++=.+.|++||.++..+.+.++.
T Consensus 37 ~l~l~i~~-~~I~d~~f~~~GC~is~Asas~~~e~i~Gk~l~ea~~i~~~~i~~~l 91 (121)
T TIGR03419 37 KIFLKVED-DIIKDVKFKTFGCGAAIASSSMATEMIKGKTLEEAWELTNKAVAEAL 91 (121)
T ss_pred EEEEEEcC-CEEEEEEEEEeccHHHHHHHHHHHHHHcCCCHHHHHHhhhHHHHHHH
Confidence 455 5554 68899999998877655555444555578999999999887765554
No 123
>PF00113 Enolase_C: Enolase, C-terminal TIM barrel domain; InterPro: IPR020810 Enolase (2-phospho-D-glycerate hydrolase) is an essential glycolytic enzyme that catalyses the interconversion of 2-phosphoglycerate and phosphoenolpyruvate [, ]. In vertebrates, there are 3 different, tissue-specific isoenzymes, designated alpha, beta and gamma. Alpha is present in most tissues, beta is localised in muscle tissue, and gamma is found only in nervous tissue. The functional enzyme exists as a dimer of any 2 isoforms. In immature organs and in adult liver, it is usually an alpha homodimer, in adult skeletal muscle, a beta homodimer, and in adult neurons, a gamma homodimer. In developing muscle, it is usually an alpha/beta heterodimer, and in the developing nervous system, an alpha/gamma heterodimer []. The tissue specific forms display minor kinetic differences. Tau-crystallin, one of the major lens proteins in some fish, reptiles and birds, has been shown [] to be evolutionary related to enolase. Neuron-specific enolase is released in a variety of neurological diseases, such as multiple sclerosis and after seizures or acute stroke. Several tumour cells have also been found positive for neuron-specific enolase. Beta-enolase deficiency is associated with glycogenosis type XIII defect.; GO: 0000287 magnesium ion binding, 0004634 phosphopyruvate hydratase activity, 0006096 glycolysis, 0000015 phosphopyruvate hydratase complex; PDB: 2FYM_D 3H8A_C 1E9I_D 3TQP_B 2PU1_A 1OEP_A 2PA6_A 1PDY_A 1PDZ_A 3UJ2_E ....
Probab=25.29 E-value=87 Score=25.27 Aligned_cols=30 Identities=13% Similarity=0.351 Sum_probs=21.4
Q ss_pred CCCC-CHHHHHHHHHHHHHHHHhcccccCCcEEEEE
Q psy7294 69 KPDL-TVQEAYSVLKQCVHHMKRRTVLSYPKFTVKV 103 (123)
Q Consensus 69 ~~~m-t~eEAi~L~~k~i~~a~~Rd~~s~~~~~V~v 103 (123)
-|++ +.|||++|+.+|++.+-+.. .+.|++
T Consensus 73 aP~~~~~eeaL~ll~~Ai~~aGy~~-----~v~ial 103 (295)
T PF00113_consen 73 APNIDDNEEALDLLMEAIKEAGYEP-----DVAIAL 103 (295)
T ss_dssp --SBSSHHHHHHHHHHHHHHTT-TT-----TBEEEE
T ss_pred CCCCcchhHHHHHHHHHHHHccccc-----eeeeec
Confidence 3565 57999999999999987643 666665
No 124
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=24.95 E-value=1.2e+02 Score=23.38 Aligned_cols=40 Identities=13% Similarity=0.024 Sum_probs=31.0
Q ss_pred eEEEcccHHHHHHHHHc----cCCCCCCHHHHHHHHHHHHHHHH
Q psy7294 50 YAYIGINGFLTASLVDK----YYKPDLTVQEAYSVLKQCVHHMK 89 (123)
Q Consensus 50 ~~a~G~Gs~~~~~~Ld~----~y~~~mt~eEAi~L~~k~i~~a~ 89 (123)
...+|+|-.|+.-++|. .-+.+++.++|.+++.+.+.-+.
T Consensus 162 ta~~gsgPA~~~~~~~al~~~~v~~Gl~~~~a~~l~~~~~~G~a 205 (260)
T PTZ00431 162 TAISGCGPAYVFLFIESLIDAGVKNGLNRDVSKNLVLQTILGSV 205 (260)
T ss_pred hhhcCCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 44478888887777776 34579999999999999887543
No 125
>cd04441 DEP_2_DEP6 DEP (Dishevelled, Egl-10, and Pleckstrin) domain 2 found in DEP6-like proteins. DEP6 proteins contain two DEP and a PDZ domain. Their function is unknown.
Probab=24.82 E-value=1.4e+02 Score=19.66 Aligned_cols=32 Identities=13% Similarity=0.126 Sum_probs=24.4
Q ss_pred ccHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHH
Q psy7294 55 INGFLTASLVDKYYKPDLTVQEAYSVLKQCVHHM 88 (123)
Q Consensus 55 ~Gs~~~~~~Ld~~y~~~mt~eEAi~L~~k~i~~a 88 (123)
.|+.++..+++.. +--|.+||+.++.+=+..-
T Consensus 34 ~GsElVdWL~~~~--~~~sR~eAv~lgq~Ll~~g 65 (85)
T cd04441 34 VGSEFIDWLLQEG--EAESRREAVQLCRRLLEHG 65 (85)
T ss_pred EchHHHHHHHHcC--CCCCHHHHHHHHHHHHHCC
Confidence 4678888888875 4579999999987665443
No 126
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=24.76 E-value=90 Score=23.29 Aligned_cols=41 Identities=10% Similarity=0.005 Sum_probs=31.6
Q ss_pred eEEEcccHHHHHHHHHcc----CCCCCCHHHHHHHHHHHHHHHHh
Q psy7294 50 YAYIGINGFLTASLVDKY----YKPDLTVQEAYSVLKQCVHHMKR 90 (123)
Q Consensus 50 ~~a~G~Gs~~~~~~Ld~~----y~~~mt~eEAi~L~~k~i~~a~~ 90 (123)
...+|+|..|+.-+++.- -+.+++.|+|.+++...++...+
T Consensus 171 ~a~~gs~pa~~~~~~~a~~~~~~~~Gl~~~~a~~~~~~~~~g~~~ 215 (245)
T PRK07634 171 TAVTGSAPAFLYYFAESLIEATKSYGVDEETAKHLVIQMISGSAS 215 (245)
T ss_pred HhhhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 455788888888887763 34689999999999888886653
No 127
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=24.66 E-value=1.3e+02 Score=23.34 Aligned_cols=40 Identities=13% Similarity=0.194 Sum_probs=30.5
Q ss_pred eEEEcccHHHHHHHHHccC----CC-CCCHHHHHHHHHHHHHHHH
Q psy7294 50 YAYIGINGFLTASLVDKYY----KP-DLTVQEAYSVLKQCVHHMK 89 (123)
Q Consensus 50 ~~a~G~Gs~~~~~~Ld~~y----~~-~mt~eEAi~L~~k~i~~a~ 89 (123)
...+|+|-.|+.-++|.-. +. +++.++|.+++.+.+.-+.
T Consensus 169 tal~gsgPA~~~~~~~al~~a~~~~ggl~~~~a~~l~~~~~~G~a 213 (277)
T PRK06928 169 SNLTSSSPGFIAAIFEEFAEAAVRNSSLSDEEAFQFLNFALAGTG 213 (277)
T ss_pred eeeecCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 3447899888877777654 34 7999999999998887543
No 128
>cd04447 DEP_BRCC3 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in BBRC3-like proteins. BBRC3, also known as DEPDC1B, is a DEP containing protein of unknown function.
Probab=24.04 E-value=1.8e+02 Score=19.59 Aligned_cols=20 Identities=25% Similarity=0.524 Sum_probs=15.9
Q ss_pred cCCCCCCHHHHHHHHHHHHH
Q psy7294 67 YYKPDLTVQEAYSVLKQCVH 86 (123)
Q Consensus 67 ~y~~~mt~eEAi~L~~k~i~ 86 (123)
++.|+.|..+|+.|+.+-+.
T Consensus 48 ~fg~~vtR~~av~l~qkll~ 67 (92)
T cd04447 48 NFGPEVTRQQTVQLLKKFLK 67 (92)
T ss_pred ccCCCCCHHHHHHHHHHHHH
Confidence 35689999999999776554
No 129
>PHA02823 chemokine binding protein; Provisional
Probab=23.94 E-value=52 Score=25.81 Aligned_cols=19 Identities=32% Similarity=0.663 Sum_probs=16.1
Q ss_pred CCCCHHHHHHHHHHHHHHH
Q psy7294 70 PDLTVQEAYSVLKQCVHHM 88 (123)
Q Consensus 70 ~~mt~eEAi~L~~k~i~~a 88 (123)
+.||.+||++|+++|...+
T Consensus 141 ~sitr~ealal~~~CevsI 159 (255)
T PHA02823 141 PAITREEALAMIKDCEVSI 159 (255)
T ss_pred ccccHHHHHHHHhhceeeE
Confidence 4699999999999997543
No 130
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=23.94 E-value=82 Score=20.27 Aligned_cols=16 Identities=19% Similarity=0.274 Sum_probs=10.2
Q ss_pred CCHHHHHHHHHHHHHH
Q psy7294 72 LTVQEAYSVLKQCVHH 87 (123)
Q Consensus 72 mt~eEAi~L~~k~i~~ 87 (123)
|+.++|+.|+++|+.+
T Consensus 1 ~~l~kai~Lv~~A~~e 16 (75)
T cd02680 1 LDLERAHFLVTQAFDE 16 (75)
T ss_pred CCHHHHHHHHHHHHHh
Confidence 3456777777777653
No 131
>PF11469 Ribonucleas_3_2: Ribonuclease III; InterPro: IPR021568 This archaeal family of proteins has no known function. ; PDB: 1ZTD_A.
Probab=23.62 E-value=56 Score=22.87 Aligned_cols=28 Identities=21% Similarity=0.432 Sum_probs=16.8
Q ss_pred HHHHHHHccC-CCCCCHHHHHHHHHHHHH
Q psy7294 59 LTASLVDKYY-KPDLTVQEAYSVLKQCVH 86 (123)
Q Consensus 59 ~~~~~Ld~~y-~~~mt~eEAi~L~~k~i~ 86 (123)
++..++-..| +..+|.|||++++++-+.
T Consensus 61 ~aEA~iAyAWLeg~it~eEaveil~~nl~ 89 (120)
T PF11469_consen 61 IAEALIAYAWLEGKITIEEAVEILKANLT 89 (120)
T ss_dssp HHHHHHHHHHHTTSS-HHHHHHHHHCT--
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHhcCc
Confidence 3444444444 346999999999887663
No 132
>PF10397 ADSL_C: Adenylosuccinate lyase C-terminus; InterPro: IPR019468 Adenylosuccinate lyase catalyses two steps in the synthesis of purine nucleotides: the conversion of succinylaminoimidazole-carboxamide ribotide into aminoimidazole-carboxamide ribotide (the fifth step of de novo IMP biosynthesis); the formation of adenosine monophosphate (AMP) from adenylosuccinate (the final step in the synthesis of AMP from IMP) []. This entry represents the C-terminal, seven alpha-helical, domain of adenylosuccinate lyase [].; PDB: 1YIS_A 1C3U_B 1C3C_A 3C8T_A 2PFM_B 1RE5_D 1Q5N_A 2VD6_D 2J91_B 2X75_A.
Probab=23.42 E-value=85 Score=19.90 Aligned_cols=22 Identities=18% Similarity=0.169 Sum_probs=17.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHHh
Q psy7294 69 KPDLTVQEAYSVLKQCVHHMKR 90 (123)
Q Consensus 69 ~~~mt~eEAi~L~~k~i~~a~~ 90 (123)
+.+|+.++|.+++.++-..+..
T Consensus 15 ~~G~gR~~Ah~lv~~~a~~a~~ 36 (81)
T PF10397_consen 15 EKGLGRQEAHELVQEAAMEAWE 36 (81)
T ss_dssp HTTH-HHHHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHHHHH
Confidence 4679999999999998887764
No 133
>PRK08176 pdxK pyridoxal-pyridoxamine kinase/hydroxymethylpyrimidine kinase; Reviewed
Probab=22.67 E-value=1.5e+02 Score=23.10 Aligned_cols=40 Identities=18% Similarity=0.139 Sum_probs=31.4
Q ss_pred EEEcccHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHHHhc
Q psy7294 51 AYIGINGFLTASLVDKYYKPDLTVQEAYSVLKQCVHHMKRR 91 (123)
Q Consensus 51 ~a~G~Gs~~~~~~Ld~~y~~~mt~eEAi~L~~k~i~~a~~R 91 (123)
..+|.|..|+-.++-... .+.+.+||++.+.+.+..+.++
T Consensus 227 ~~~GaGD~faa~~~a~l~-~g~~l~~Av~~A~~~v~~~i~~ 266 (281)
T PRK08176 227 DLKGTGDLFCAELVSGLL-KGKALTDAAHRAGLRVLEVMRY 266 (281)
T ss_pred CCCChhHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHH
Confidence 458999988888877654 4678999999988888777654
No 134
>PLN00191 enolase
Probab=22.20 E-value=1.3e+02 Score=25.73 Aligned_cols=29 Identities=17% Similarity=0.392 Sum_probs=22.2
Q ss_pred CCC-CHHHHHHHHHHHHHHHHhcccccCCcEEEEE
Q psy7294 70 PDL-TVQEAYSVLKQCVHHMKRRTVLSYPKFTVKV 103 (123)
Q Consensus 70 ~~m-t~eEAi~L~~k~i~~a~~Rd~~s~~~~~V~v 103 (123)
|++ +-+||++|+.+|+..+-++ +.+.+++
T Consensus 237 p~~~~~~eal~ll~eAi~~ag~~-----~~i~i~l 266 (457)
T PLN00191 237 PNIQDNKEGLELLKEAIEKAGYT-----GKIKIGM 266 (457)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCC-----CceEEEe
Confidence 455 8999999999999988754 2366664
No 135
>cd00737 endolysin_autolysin Endolysins and autolysins are found in viruses and bacteria, respectively. The ds DNA phages of eubacteria use endolysins or muralytic enzymes in conjunction with hollin, a small membrane protein, to degrade the peptidoglycan found in bacterial cell walls. Similarly, bacteria produce autolysins to facilitate the biosynthesis of its cell wall hetropolymer peptidoglycan and cell division. Both endolysin and autolysin enzymes cleave the glycosidic beta 1,4-bonds between the N-acetylmuramic acid and the N-acetylglucosamine of the peptidoglycan.
Probab=22.05 E-value=1.5e+02 Score=20.33 Aligned_cols=42 Identities=21% Similarity=0.158 Sum_probs=27.0
Q ss_pred EECCCCceeeeCeEEEcccHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHHHh
Q psy7294 38 KGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEAYSVLKQCVHHMKR 90 (123)
Q Consensus 38 ~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~~mt~eEAi~L~~k~i~~a~~ 90 (123)
+.|+.|. ..+|+|..... .....+|.+||.+++.+-|.....
T Consensus 20 Y~D~~G~------~TiG~G~t~~~-----~~g~~iT~~qa~~ll~~dl~~~~~ 61 (133)
T cd00737 20 YKDPAGV------WTIGYGHTGGV-----VPGMTITEEQADALLAKDLAKAER 61 (133)
T ss_pred eECCCCC------eEeCcCcccCC-----CCCCccCHHHHHHHHHHHHHHHHH
Confidence 4577763 36777765421 123468999999998777766543
No 136
>cd01173 pyridoxal_pyridoxamine_kinase Pyridoxal kinase plays a key role in the synthesis of the active coenzyme pyridoxal-5'-phosphate (PLP), by catalyzing the phosphorylation of the precursor vitamin B6 in the presence of Zn2+ and ATP. Mammals are unable to synthesize PLP de novo and require its precursors in the form of vitamin B6 (pyridoxal, pyridoxine, and pyridoxamine) from their diet. Pyridoxal kinase encoding genes are also found in many other species including yeast and bacteria.
Probab=21.83 E-value=1.5e+02 Score=22.22 Aligned_cols=40 Identities=18% Similarity=0.242 Sum_probs=31.5
Q ss_pred eEEEcccHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHHHh
Q psy7294 50 YAYIGINGFLTASLVDKYYKPDLTVQEAYSVLKQCVHHMKR 90 (123)
Q Consensus 50 ~~a~G~Gs~~~~~~Ld~~y~~~mt~eEAi~L~~k~i~~a~~ 90 (123)
.-.+|.|..|+-.++-... .+.+.+||++.+...+..+.+
T Consensus 211 ~~~~GaGD~f~a~~~~~l~-~g~~~~~a~~~A~~~~~~~i~ 250 (254)
T cd01173 211 AYFNGTGDLFAALLLARLL-KGKSLAEALEKALNFVHEVLE 250 (254)
T ss_pred CCcCChHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHH
Confidence 3458999888888776544 478999999999888877765
No 137
>PRK14069 exodeoxyribonuclease VII small subunit; Provisional
Probab=21.82 E-value=2e+02 Score=19.50 Aligned_cols=28 Identities=14% Similarity=0.335 Sum_probs=19.5
Q ss_pred HHHHccCCCCCCHHHHHHHHHHHHHHHH
Q psy7294 62 SLVDKYYKPDLTVQEAYSVLKQCVHHMK 89 (123)
Q Consensus 62 ~~Ld~~y~~~mt~eEAi~L~~k~i~~a~ 89 (123)
.++.+--..++++|+++++-.+++..+.
T Consensus 19 eIV~~LEsgdl~LEesl~lyeeGv~L~k 46 (95)
T PRK14069 19 QIAEKLERQDFSLEESLKAYERGMELKK 46 (95)
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence 3444445679999999988777666553
No 138
>TIGR00166 S6 ribosomal protein S6. MRP17 protein is a component of the small ribosomal subunit in mitochondria, and is shown here to be an ortholog of S6.
Probab=21.69 E-value=2.4e+02 Score=18.24 Aligned_cols=43 Identities=9% Similarity=0.125 Sum_probs=26.0
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCeEEeeccccc
Q psy7294 69 KPDLTVQEAYSVLKQCVHHMKRRTVLSYPKFTVKVLDRTGTVNVLQDLKY 118 (123)
Q Consensus 69 ~~~mt~eEAi~L~~k~i~~a~~Rd~~s~~~~~V~vI~kdG~~~l~~~~k~ 118 (123)
+|+++.+ ..+++.+.-..+. ..+-+|..++.=|.+.|..++|+
T Consensus 10 ~p~~~~~-~~~~~~~~~~~i~------~~gg~i~~~~~~G~r~LaY~I~k 52 (93)
T TIGR00166 10 RPTLSEE-VKGQIERYKKVIT------LNGAEIVRSEDWGKRRLAYPIKK 52 (93)
T ss_pred CCCCcHH-HHHHHHHHHHHHH------hCCCEEEEEEeecceecceEcCC
Confidence 5677765 4444443333332 24455666677799999888776
No 139
>PTZ00344 pyridoxal kinase; Provisional
Probab=21.61 E-value=1.2e+02 Score=23.65 Aligned_cols=39 Identities=13% Similarity=0.254 Sum_probs=29.2
Q ss_pred EEEcccHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHHHhc
Q psy7294 51 AYIGINGFLTASLVDKYYKPDLTVQEAYSVLKQCVHHMKRR 91 (123)
Q Consensus 51 ~a~G~Gs~~~~~~Ld~~y~~~mt~eEAi~L~~k~i~~a~~R 91 (123)
..+|.|..|+-.++ ..+..+ +.+||++.+...+..+.++
T Consensus 220 ~~~GaGD~f~A~~~-a~l~~g-~~~~a~~~A~a~~~~~i~~ 258 (296)
T PTZ00344 220 RYTGTGDLFAALLL-AFSHQH-PMDLAVGKAMGVLQDIIKA 258 (296)
T ss_pred CCCCchHHHHHHHH-HHHhcC-CHHHHHHHHHHHHHHHHHH
Confidence 44799999888887 444445 8999999987777766654
No 140
>COG2425 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=21.61 E-value=2.4e+02 Score=24.24 Aligned_cols=47 Identities=15% Similarity=0.194 Sum_probs=31.8
Q ss_pred CCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHc---------------------cCCCCCCHHHHHHH
Q psy7294 31 TFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDK---------------------YYKPDLTVQEAYSV 80 (123)
Q Consensus 31 ~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~---------------------~y~~~mt~eEAi~L 80 (123)
..||.+--+|-+||+...+... +..+|..+++- -|.+..+.+|+++.
T Consensus 271 ~~GpvilllD~SGSM~G~~e~~---AKAvalAl~~~alaenR~~~~~lF~s~~~~~el~~k~~~~~e~i~f 338 (437)
T COG2425 271 SEGPVILLLDKSGSMSGFKEQW---AKAVALALMRIALAENRDCYVILFDSEVIEYELYEKKIDIEELIEF 338 (437)
T ss_pred CCCCEEEEEeCCCCcCCcHHHH---HHHHHHHHHHHHHHhccceEEEEecccceeeeecCCccCHHHHHHH
Confidence 3489999999999998777322 22334443332 24466799999998
No 141
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=21.55 E-value=95 Score=20.71 Aligned_cols=28 Identities=25% Similarity=0.356 Sum_probs=18.5
Q ss_pred cccHHHHHHHHHccCCCCCCHHHHHHHHHH
Q psy7294 54 GINGFLTASLVDKYYKPDLTVQEAYSVLKQ 83 (123)
Q Consensus 54 G~Gs~~~~~~Ld~~y~~~mt~eEAi~L~~k 83 (123)
|....++..+|-... +++.++|++.+++
T Consensus 93 ~Rs~~~~~~~l~~~~--~~~~~~a~~~vr~ 120 (139)
T cd00127 93 SRSATLVIAYLMKTL--GLSLREAYEFVKS 120 (139)
T ss_pred chhHHHHHHHHHHHc--CCCHHHHHHHHHH
Confidence 344455555555543 7899999999765
No 142
>PF08529 NusA_N: NusA N-terminal domain; InterPro: IPR013735 This entry represents the N-terminal RNA polymerase-binding domain of bacterial transcription factors such as NusA (N-utilising substance A). NusA is involved in transcriptional pausing, termination and anti-termination. NusA from Thermotoga maritima contains an N-terminal domain and three RNA-binding domains (one S1 domain and two KH domains). The N-terminal domain consists of a bifurcated coiled beta-sheet within an alpha/beta(3)/alpha/beta/alpha fold, which can be divided into two subdomains: a globular head and a helical body. The globular head subdomain may interact with RNA polymerase, while the helical body displays a similar structure to that of the helical domain in sigma70 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0031554 regulation of transcription termination, DNA-dependent; PDB: 1K0R_B 1HH2_P 1L2F_A 2KWP_A.
Probab=21.38 E-value=2.8e+02 Score=18.96 Aligned_cols=40 Identities=10% Similarity=0.176 Sum_probs=32.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCC
Q psy7294 69 KPDLTVQEAYSVLKQCVHHMKRRTVLSYPKFTVKVLDRTG 108 (123)
Q Consensus 69 ~~~mt~eEAi~L~~k~i~~a~~Rd~~s~~~~~V~vI~kdG 108 (123)
..+++.+.-++.++.||..+..+..-...+++|.+=...|
T Consensus 12 ek~i~~e~v~~ale~al~~a~kK~~~~~~~~~v~id~~~g 51 (122)
T PF08529_consen 12 EKGIDKEVVIEALEEALIKAYKKKYGPEANIRVEIDEDTG 51 (122)
T ss_dssp CCTB-HHHHHHHHHHHHHHHHHCCTTSSSSEEEEEETTTT
T ss_pred HhCcCHHHHHHHHHHHHHHHHHHhhCCCCCEEEEEECCCC
Confidence 4689999999999999999999986677888888644556
No 143
>PF02084 Bindin: Bindin; InterPro: IPR000775 Bindin, the major protein component of the acrosome granule of sea urchin sperm, mediates species-specific adhesion of sperm to the egg surface during fertilisation [, ]. The protein coats the acrosomal process after externalisation by the acrosome reaction; it binds to sulphated, fucose-containing polysaccharides on the vitelline-layer receptor proteoglycans that cover the egg plasma membrane. Bindins from different genera show high levels of sequence similarity in both the mature bindin domain and in the probindin precursor region. The most highly conserved region is a 42-residue segment in the central portion of the mature bindin protein. This domain may be responsible for conserved functions of bindin, while the more highly divergent flanking regions may be responsible for its species-specific properties [].; GO: 0007342 fusion of sperm to egg plasma membrane
Probab=20.93 E-value=26 Score=27.52 Aligned_cols=11 Identities=55% Similarity=0.688 Sum_probs=8.8
Q ss_pred cccccchhhHH
Q psy7294 2 LRQNSNSLTPI 12 (123)
Q Consensus 2 ~~~~~~~~~~~ 12 (123)
||..||.||||
T Consensus 137 LRHHSNLLAnI 147 (238)
T PF02084_consen 137 LRHHSNLLANI 147 (238)
T ss_pred HHHHHHHHhhc
Confidence 67888888887
No 144
>cd04443 DEP_GPR155 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in GPR155-like proteins. GRP155-like proteins, also known as PGR22, contain an N-terminal permease domain, a central transmembrane region and a C-terminal DEP domain. They are orphan receptors of the class B G protein-coupled receptors. Their function is unknown.
Probab=20.87 E-value=2.2e+02 Score=18.46 Aligned_cols=32 Identities=13% Similarity=-0.106 Sum_probs=23.8
Q ss_pred ccHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHH
Q psy7294 55 INGFLTASLVDKYYKPDLTVQEAYSVLKQCVHHM 88 (123)
Q Consensus 55 ~Gs~~~~~~Ld~~y~~~mt~eEAi~L~~k~i~~a 88 (123)
.|+.++..+++.. .--|.+||+.++..=+..-
T Consensus 32 ~GselVdWL~~~~--~~~sR~eAv~lg~~Ll~~G 63 (83)
T cd04443 32 CGCDLVSWLIEVG--LAQDRGEAVLYGRRLLQGG 63 (83)
T ss_pred cHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHCC
Confidence 5778888888753 3579999999988665443
No 145
>cd00735 bacteriophage_T4-like_lysozyme Bacteriophage T4-like lysozymes hydrolyse the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetylglucosamine (GlcNAc) in peptidoglycan heteropolymers of prokaryotic cell walls. Members include a variety of bacteriophages (T4, RB49, RB69, Aeh1) as well as Dictyostelium.
Probab=20.71 E-value=1.7e+02 Score=21.44 Aligned_cols=19 Identities=11% Similarity=0.193 Sum_probs=15.1
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q psy7294 71 DLTVQEAYSVLKQCVHHMK 89 (123)
Q Consensus 71 ~mt~eEAi~L~~k~i~~a~ 89 (123)
.+|.+||.+++.+=+..+.
T Consensus 59 ~iT~~qa~~lL~~Dl~~~~ 77 (164)
T cd00735 59 VITSEEVEALFEKDLAKAQ 77 (164)
T ss_pred CCCHHHHHHHHHHHHHHHH
Confidence 4799999999887776654
No 146
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=20.61 E-value=1.6e+02 Score=23.47 Aligned_cols=60 Identities=18% Similarity=0.093 Sum_probs=40.7
Q ss_pred eEEEcccHHHHHHHHHc----cCCCCCCHHHHHHHHHHHHHHHHhcccccCC---cEEEEEEcCCCe
Q psy7294 50 YAYIGINGFLTASLVDK----YYKPDLTVQEAYSVLKQCVHHMKRRTVLSYP---KFTVKVLDRTGT 109 (123)
Q Consensus 50 ~~a~G~Gs~~~~~~Ld~----~y~~~mt~eEAi~L~~k~i~~a~~Rd~~s~~---~~~V~vI~kdG~ 109 (123)
...+|||=.|+.-++|. .-+.+|+.|+|.+|+...+.-+.+-..-++. .+.=.|+++.|+
T Consensus 166 TaisGSgPAyv~~~iEal~~agv~~Gl~~~~A~~l~~~t~~Gaakll~e~~~~p~~Lr~~VtSPGGt 232 (266)
T COG0345 166 TALSGSGPAYVFLFIEALADAGVRLGLPREEARELAAQTVAGAAKLLLESGEHPAELRDQVTSPGGT 232 (266)
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhCcCCCch
Confidence 34588998777777666 4567899999999999988877655434443 223334556554
No 147
>cd05173 PI3Kc_IA_beta Phosphoinositide 3-kinase (PI3K), class IA, beta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and de
Probab=20.60 E-value=1.7e+02 Score=24.33 Aligned_cols=30 Identities=13% Similarity=0.101 Sum_probs=23.7
Q ss_pred HHHHHccCCCCCCHHHHHHHHHHHHHHHHh
Q psy7294 61 ASLVDKYYKPDLTVQEAYSVLKQCVHHMKR 90 (123)
Q Consensus 61 ~~~Ld~~y~~~mt~eEAi~L~~k~i~~a~~ 90 (123)
...|++.+..++|.|||.+...+-|.++..
T Consensus 316 i~~l~~r~~l~~se~eA~~~f~~~i~~s~~ 345 (362)
T cd05173 316 IQYLKDSLALGKSEEEALKQFRQKFDEALR 345 (362)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 345666677899999999998888888764
No 148
>PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins.
Probab=20.53 E-value=73 Score=22.26 Aligned_cols=25 Identities=32% Similarity=0.432 Sum_probs=18.0
Q ss_pred HHHHHHHHccCCCCCCHHHHHHHHH
Q psy7294 58 FLTASLVDKYYKPDLTVQEAYSVLK 82 (123)
Q Consensus 58 ~~~~~~Ld~~y~~~mt~eEAi~L~~ 82 (123)
.....+|++--+-.+|.|||+++++
T Consensus 89 ~~~~~IL~~L~~GeIs~eeA~~~Lk 113 (113)
T PF09862_consen 89 DERKEILDKLEKGEISVEEALEILK 113 (113)
T ss_pred hhHHHHHHHHHcCCCCHHHHHHHhC
Confidence 3445566666667899999998864
No 149
>cd01678 PFL1 Pyruvate formate lyase 1. Pyruvate formate lyase catalyzes a key step in anaerobic glycolysis, the conversion of pyruvate and CoenzymeA to formate and acetylCoA. The PFL mechanism involves an unusual radical cleavage of pyruvate in which two cysteines and one glycine form radicals that are required for catalysis. PFL has a ten-stranded alpha/beta barrel domain that is structurally similar to those of all three ribonucleotide reductase (RNR) classes as well as benzylsuccinate synthase and B12-independent glycerol dehydratase.
Probab=20.47 E-value=96 Score=28.30 Aligned_cols=44 Identities=16% Similarity=0.181 Sum_probs=32.8
Q ss_pred CCceeeeC--eEEEcccHHHHHHHHHccCCCC-CCHHHHHHHHHHHH
Q psy7294 42 YGFMLEVP--YAYIGINGFLTASLVDKYYKPD-LTVQEAYSVLKQCV 85 (123)
Q Consensus 42 ~Gs~~~~~--~~a~G~Gs~~~~~~Ld~~y~~~-mt~eEAi~L~~k~i 85 (123)
.+...+.+ +.+.|.=.++..|++++-.+.+ +|+|||.+|+..-+
T Consensus 250 la~~~E~ng~a~S~GR~DqyL~pyyerDl~~G~iteeeAqELid~~~ 296 (738)
T cd01678 250 LAAIKEQNGAAMSLGRVSTFLDIYIERDLKAGTITEAEAQELIDQFI 296 (738)
T ss_pred HHHHhhccccccCCCchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 34444444 4556777999999999988766 89999999987544
No 150
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=20.25 E-value=1.9e+02 Score=20.97 Aligned_cols=33 Identities=18% Similarity=0.205 Sum_probs=22.7
Q ss_pred eEEEcccHHHHHHHHHccCCCCCCHHHHHHHHHHH
Q psy7294 50 YAYIGINGFLTASLVDKYYKPDLTVQEAYSVLKQC 84 (123)
Q Consensus 50 ~~a~G~Gs~~~~~~Ld~~y~~~mt~eEAi~L~~k~ 84 (123)
....|..+.++..+|=+. .+++.+||++.+++.
T Consensus 106 ~aGigRSgt~~a~yL~~~--~~~s~~eAi~~vr~~ 138 (166)
T PTZ00242 106 VAGLGRAPILVALALVEY--GGMEPLDAVGFVREK 138 (166)
T ss_pred CCCCCHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 344666677766666544 368999999998643
No 151
>PTZ00347 phosphomethylpyrimidine kinase; Provisional
Probab=20.24 E-value=1.6e+02 Score=25.02 Aligned_cols=39 Identities=21% Similarity=0.119 Sum_probs=31.9
Q ss_pred EEcccHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHHHhc
Q psy7294 52 YIGINGFLTASLVDKYYKPDLTVQEAYSVLKQCVHHMKRR 91 (123)
Q Consensus 52 a~G~Gs~~~~~~Ld~~y~~~mt~eEAi~L~~k~i~~a~~R 91 (123)
.+|.|..++-.++-..- .+++.+||++.++.++..+.++
T Consensus 440 ~~GaGD~fsaaiaa~la-~G~~l~eAv~~A~~~v~~~i~~ 478 (504)
T PTZ00347 440 THGTGCTLASAISSFLA-RGYTVPDAVERAIGYVHEAIVR 478 (504)
T ss_pred CCChHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHh
Confidence 37999888877766543 4789999999999999988875
No 152
>cd04440 DEP_2_P-Rex DEP (Dishevelled, Egl-10, and Pleckstrin) domain 2 found in P-Rex-like proteins. The P-Rex family is the guanine-nucleotide exchange factor (GEF) for the small GTPase Rac that contains an N-terminal RhoGEF domain, two DEP and PDZ domains. Rac-GEF activity is stimulated by phosphatidylinositol (3,4,5)-trisphosphate (PtdIns(3,4,5)P3), a lipid second messenger, and the G beta-gamma subunits of heterotrimeric G proteins. The DEP domains are not involved in mediating these stimuli, but may be of importance for basal and stimulated levels Rac-GEF activity.
Probab=20.22 E-value=2.4e+02 Score=18.96 Aligned_cols=29 Identities=17% Similarity=-0.112 Sum_probs=23.0
Q ss_pred ccHHHHHHHHHccCCCCCCHHHHHHHHHHHH
Q psy7294 55 INGFLTASLVDKYYKPDLTVQEAYSVLKQCV 85 (123)
Q Consensus 55 ~Gs~~~~~~Ld~~y~~~mt~eEAi~L~~k~i 85 (123)
.|+.++..+++.. +--|.+||+.+...=+
T Consensus 39 vGsElVdWLi~~g--~~~tR~eAv~~gq~Ll 67 (93)
T cd04440 39 PASKLVDWLLAQG--DCRTREEAVILGVGLC 67 (93)
T ss_pred chhHHHHHHHHcC--CCCCHHHHHHHHHHHH
Confidence 5789999999984 4449999999977544
No 153
>PLN02978 pyridoxal kinase
Probab=20.07 E-value=1.2e+02 Score=24.08 Aligned_cols=41 Identities=12% Similarity=0.161 Sum_probs=27.7
Q ss_pred eEEEcccHHHHHHHHHccCCCC-CCHHHHHHHHHHHHHHHHhc
Q psy7294 50 YAYIGINGFLTASLVDKYYKPD-LTVQEAYSVLKQCVHHMKRR 91 (123)
Q Consensus 50 ~~a~G~Gs~~~~~~Ld~~y~~~-mt~eEAi~L~~k~i~~a~~R 91 (123)
...+|.|..|+-- +-..+..+ .+.+||++.+...+..+.++
T Consensus 226 ~~~~GtGD~fsA~-laa~l~~g~~~l~~A~~~A~~~v~~~i~~ 267 (308)
T PLN02978 226 AYFTGTGDLMAAL-LLGWSHKYPDNLDKAAELAVSSLQAVLRR 267 (308)
T ss_pred CCCCCchHHHHHH-HHHHHhcCCcCHHHHHHHHHHHHHHHHHH
Confidence 3457999888774 33334343 68899999887777766554
Done!