Query psy7294
Match_columns 123
No_of_seqs 125 out of 1005
Neff 6.5
Searched_HMMs 29240
Date Fri Aug 16 23:01:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7294.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7294hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ryp_M 20S proteasome; multica 99.9 3.8E-26 1.3E-30 172.8 13.0 115 4-119 88-222 (222)
2 1iru_M 20S proteasome; cell cy 99.9 7.4E-26 2.5E-30 169.6 13.1 115 4-119 87-213 (213)
3 3h4p_a Proteasome subunit beta 99.9 1.4E-25 4.9E-30 169.5 11.7 110 4-114 79-192 (219)
4 1iru_J 20S proteasome; cell cy 99.9 3.7E-25 1.3E-29 164.9 13.4 116 4-119 86-205 (205)
5 1ryp_J 20S proteasome; multica 99.9 4.4E-25 1.5E-29 164.4 13.2 116 4-119 85-204 (204)
6 1j2q_H Proteasome beta subunit 99.9 3E-25 1E-29 165.0 12.1 110 3-114 77-190 (202)
7 1iru_L 20S proteasome; cell cy 99.9 1E-24 3.6E-29 162.4 12.9 109 4-114 78-189 (204)
8 1ryp_K 20S proteasome; multica 99.9 9.8E-25 3.3E-29 161.7 12.3 111 4-114 79-194 (198)
9 3nzj_K Proteasome component PR 99.9 1.5E-24 5.2E-29 170.8 12.4 110 4-114 153-265 (287)
10 3unf_H Proteasome subunit beta 99.9 2.4E-24 8.2E-29 165.0 12.7 110 4-116 78-190 (234)
11 1ryp_L 20S proteasome; multica 99.9 2.6E-24 8.9E-29 161.2 12.2 110 4-114 78-190 (212)
12 1yar_H Proteasome beta subunit 99.9 2.3E-24 7.7E-29 162.6 11.3 108 4-114 86-197 (217)
13 1iru_N 20S proteasome; cell cy 99.9 3E-24 1E-28 161.6 11.3 110 4-115 87-203 (219)
14 1ryp_H 20S proteasome; multica 99.9 4.8E-24 1.6E-28 159.0 12.2 109 4-114 86-197 (205)
15 1ryp_I 20S proteasome; multica 99.9 1.1E-23 3.6E-28 159.5 12.6 109 4-115 78-190 (222)
16 1ryp_N 20S proteasome; multica 99.9 5E-24 1.7E-28 162.0 10.4 110 4-114 91-211 (233)
17 1iru_K 20S proteasome; cell cy 99.9 1.1E-23 3.9E-28 156.4 12.1 109 6-115 81-194 (201)
18 1ryp_A 20S proteasome; multica 99.9 7E-24 2.4E-28 162.1 10.5 108 4-113 107-228 (243)
19 1iru_H 20S proteasome; cell cy 99.9 2.3E-23 8E-28 155.1 12.3 105 4-110 78-185 (205)
20 3nzj_H Proteasome component PU 99.9 7E-23 2.4E-27 159.3 13.1 107 5-114 108-218 (261)
21 1iru_B 20S proteasome; cell cy 99.9 4.4E-23 1.5E-27 156.6 10.7 108 4-114 108-222 (233)
22 1g0u_M Proteasome component PR 99.9 3.2E-23 1.1E-27 161.0 10.1 110 4-114 124-244 (266)
23 1iru_I 20S proteasome; cell cy 99.9 6.1E-23 2.1E-27 156.7 11.4 108 5-115 79-189 (234)
24 1yar_A Proteasome alpha subuni 99.9 7.6E-23 2.6E-27 155.3 10.6 107 4-113 111-225 (233)
25 1iru_A 20S proteasome; cell cy 99.9 1.7E-22 5.8E-27 154.6 12.3 108 4-113 113-231 (246)
26 1iru_C 20S proteasome; cell cy 99.9 1.3E-22 4.4E-27 156.9 9.7 109 4-113 109-229 (261)
27 3mi0_A Proteasome subunit alph 99.9 3.6E-22 1.2E-26 154.3 11.9 107 6-113 100-226 (248)
28 1ryp_C 20S proteasome; multica 99.9 2.9E-22 1E-26 153.0 10.9 105 4-109 109-222 (244)
29 1q5q_A Proteasome alpha-type s 99.9 1.5E-22 5E-27 156.8 8.8 110 3-113 97-224 (259)
30 1ryp_E 20S proteasome; multica 99.9 3.8E-22 1.3E-26 152.2 10.2 107 5-113 104-224 (242)
31 1ryp_B 20S proteasome; multica 99.9 7.8E-22 2.7E-26 151.4 10.9 101 6-108 115-218 (250)
32 1q5q_H Proteasome beta-type su 99.9 1E-21 3.4E-26 149.7 11.1 110 4-114 78-207 (235)
33 1ryp_G 20S proteasome; multica 99.9 1.9E-21 6.5E-26 149.1 12.4 108 4-113 107-227 (244)
34 1iru_E 20S proteasome; cell cy 99.9 8.1E-22 2.8E-26 150.5 9.8 107 4-113 111-230 (241)
35 1iru_G 20S proteasome; cell cy 99.9 7.8E-22 2.7E-26 152.0 9.5 109 4-113 110-228 (254)
36 1ryp_D 20S proteasome; multica 99.9 4.2E-21 1.5E-25 146.5 12.8 107 4-113 106-223 (241)
37 1iru_F 20S proteasome; cell cy 99.9 1.1E-21 3.9E-26 152.0 9.2 109 4-114 107-226 (263)
38 3unf_N Proteasome subunit beta 99.9 2.7E-21 9.4E-26 143.2 10.3 105 3-111 77-185 (199)
39 1q5r_H Proteasome beta-type su 99.8 4.7E-21 1.6E-25 151.3 11.3 110 4-114 143-272 (294)
40 1ryp_F 20S proteasome; multica 99.8 2.3E-21 7.8E-26 147.3 8.9 108 4-114 106-226 (233)
41 1iru_D 20S proteasome; cell cy 99.8 4.9E-21 1.7E-25 146.9 9.6 106 4-113 106-221 (248)
42 1j2p_A Alpha-ring, proteasome 99.8 1.7E-20 5.7E-25 143.7 12.0 106 4-113 111-225 (246)
43 3h4p_A Proteasome subunit alph 99.8 8.6E-21 2.9E-25 147.4 10.0 107 4-114 115-230 (264)
44 3nzj_F Proteasome component C1 99.8 1.8E-20 6E-25 147.7 11.2 101 4-106 111-221 (288)
45 2jay_A Proteasome; hydrolase; 99.8 2.2E-20 7.5E-25 147.2 8.7 109 4-113 135-263 (291)
46 1g3k_A ATP-dependent protease 99.8 4.9E-19 1.7E-23 129.1 7.9 95 4-105 73-173 (174)
47 2z3b_A ATP-dependent protease 99.8 1E-18 3.5E-23 128.5 7.2 94 6-105 81-180 (180)
48 1m4y_A ATP-dependent protease 99.7 5.5E-18 1.9E-22 123.1 8.0 90 9-104 78-171 (171)
49 3fpw_A HBPS, extracellular HAE 71.7 9.6 0.00033 27.9 5.9 40 69-112 62-101 (192)
50 3fau_A NEDD4-binding protein 2 71.4 6 0.0002 24.4 4.1 40 71-110 7-46 (82)
51 2a2l_A Unknown; structural gen 67.5 7.5 0.00026 26.9 4.3 39 70-112 10-48 (145)
52 2d9i_A NEDD4-binding protein 2 66.1 9.6 0.00033 24.1 4.4 39 71-109 15-53 (96)
53 2q8v_A NBLA protein; phycobili 54.6 12 0.00039 22.8 2.9 23 70-92 28-50 (63)
54 2vkc_A NEDD4-binding protein 2 54.5 19 0.00065 24.4 4.5 39 71-109 60-98 (135)
55 1ojh_A NBLA; degradation prote 53.8 12 0.00041 22.9 2.9 23 70-92 23-45 (65)
56 3ub6_A Chemoreceptor TLPB; hom 52.7 25 0.00084 24.7 5.0 49 60-113 36-84 (181)
57 1su0_B NIFU like protein ISCU; 43.2 65 0.0022 22.4 5.9 54 35-89 45-99 (159)
58 2zqe_A MUTS2 protein; alpha/be 39.7 61 0.0021 20.0 4.8 33 71-108 11-43 (83)
59 3a1q_C Ubiquitin interaction m 36.6 26 0.00089 19.5 2.3 14 70-83 2-15 (45)
60 1cqm_A Ribosomal protein S6; a 35.7 64 0.0022 20.5 4.6 44 69-118 11-54 (101)
61 2j5a_A 30S ribosomal protein S 35.5 73 0.0025 20.6 4.9 44 69-118 17-60 (110)
62 3qd7_X Uncharacterized protein 35.3 68 0.0023 21.8 4.9 59 46-109 22-87 (137)
63 1rfz_A Hypothetical protein AP 32.7 35 0.0012 24.5 3.1 23 63-85 36-58 (168)
64 3cs5_A Phycobilisome degradati 32.1 10 0.00036 22.7 0.1 23 70-92 26-48 (59)
65 1y9i_A Low temperature require 31.5 43 0.0015 24.2 3.4 23 63-85 34-56 (178)
66 1ztd_A Hypothetical protein PF 31.4 35 0.0012 23.2 2.7 27 60-86 73-100 (133)
67 3fxd_A Protein ICMQ; helix bun 31.1 41 0.0014 19.9 2.7 29 69-98 2-30 (57)
68 2f3o_A PFLD, PFL2, pyruvate fo 30.8 75 0.0026 27.8 5.4 60 50-109 272-345 (776)
69 2ysr_A DEP domain-containing p 30.6 71 0.0024 20.6 4.1 32 56-87 43-79 (105)
70 2qq4_A Iron-sulfur cluster bio 30.5 76 0.0026 21.4 4.4 55 35-90 44-99 (138)
71 1xjs_A NIFU-like protein; SR17 30.3 74 0.0025 21.8 4.4 56 35-91 46-102 (147)
72 3lvl_A NIFU-like protein; prot 30.0 52 0.0018 22.0 3.5 52 35-86 43-95 (129)
73 3cxb_A Protein SIFA; SIFA, SKI 28.1 70 0.0024 25.2 4.3 69 54-122 40-120 (336)
74 3s4o_A Protein tyrosine phosph 26.8 47 0.0016 21.8 2.8 28 54-83 121-148 (167)
75 1apy_B Aspartylglucosaminidase 26.0 1.1E+02 0.0037 21.1 4.6 56 50-110 49-108 (141)
76 1tlq_A Hypothetical protein YP 25.9 44 0.0015 24.4 2.6 24 62-85 34-57 (189)
77 2gdt_A Leader protein; P65 hom 25.6 56 0.0019 21.8 2.9 20 70-89 20-39 (116)
78 3zs7_A Pyridoxal kinase; trans 25.2 65 0.0022 24.2 3.6 40 51-92 223-262 (300)
79 1vmb_A 30S ribosomal protein S 25.1 1.1E+02 0.0038 20.9 4.5 45 69-118 28-72 (140)
80 3zqk_A VON willebrand factor; 24.7 1.7E+02 0.0057 19.9 5.7 30 79-108 40-69 (199)
81 1vp7_A Exodeoxyribonuclease VI 24.6 91 0.0031 20.3 3.8 28 62-89 41-68 (100)
82 1r9d_A Glycerol dehydratase; r 24.5 83 0.0028 27.6 4.6 37 50-88 282-318 (787)
83 2z7e_A ISCU protein, NIFU-like 24.1 89 0.003 21.8 3.9 53 35-87 41-95 (157)
84 3qtp_A Enolase 1; glycolysis, 23.6 80 0.0028 25.8 4.1 31 68-103 216-247 (441)
85 2y8n_A 4-hydroxyphenylacetate 23.2 83 0.0029 28.1 4.3 60 50-109 345-418 (897)
86 2yzt_A Putative uncharacterize 23.2 61 0.0021 18.9 2.5 21 70-90 29-49 (67)
87 3r3t_A 30S ribosomal protein S 22.9 45 0.0015 21.2 2.0 44 69-118 14-57 (99)
88 3bbn_F Ribosomal protein S6; s 22.5 27 0.00094 25.0 0.9 45 69-119 72-116 (168)
89 1nkz_B Light-harvesting protei 22.1 51 0.0017 18.2 1.8 13 70-82 1-13 (41)
90 4ds2_A Ubiquitin-conjugating e 22.0 48 0.0016 23.0 2.1 33 55-87 101-133 (167)
91 3emu_A Leucine rich repeat and 21.7 56 0.0019 22.0 2.4 28 55-84 100-127 (161)
92 3otr_A Enolase; structural gen 21.4 89 0.003 25.7 3.9 31 68-103 220-251 (452)
93 3mbh_A Putative phosphomethylp 21.2 79 0.0027 23.5 3.4 40 51-91 219-258 (291)
94 4gof_A Small glutamine-rich te 20.9 80 0.0027 18.2 2.6 32 60-91 9-43 (52)
95 1cq3_A Viral chemokine inhibit 20.7 28 0.00096 25.9 0.7 18 70-87 119-136 (233)
96 3s9k_A Tyrosine-protein kinase 20.4 71 0.0024 20.2 2.6 40 67-106 11-52 (118)
97 4gdv_A L-asparaginase; NTN enz 20.3 2E+02 0.0068 22.3 5.6 63 42-110 207-276 (310)
98 2kwp_A Transcription elongatio 20.3 2E+02 0.0069 19.1 6.2 39 70-108 16-54 (129)
99 3jtz_A Integrase; four strande 20.2 82 0.0028 19.6 2.8 21 70-90 57-77 (88)
100 1h16_A Formate acetyltransfera 20.1 1.1E+02 0.0036 26.8 4.3 38 50-87 273-311 (759)
No 1
>1ryp_M 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_M* 1jd2_L* 1g65_L 1vsy_M 1z7q_M 2f16_L* 2fak_L* 2fny_L* 2gpl_L* 3d29_L* 3dy3_L* 3dy4_L* 3e47_L* 3gpj_L* 3gpt_L* 3gpw_L* 3hye_L* 3l5q_Q 3mg0_L* 3mg4_L* ...
Probab=99.94 E-value=3.8e-26 Score=172.82 Aligned_cols=115 Identities=14% Similarity=0.165 Sum_probs=106.0
Q ss_pred cccchhhHHHhhhccccccccc---ceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHcc-------------
Q psy7294 4 QNSNSLTPILFMNKTLALNSKK---WTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKY------------- 67 (123)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~---~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~------------- 67 (123)
..+++|++++|.+|..||.+.. |+|+ +++|+||++||.|++.+++++|+|+|+.+++++||+.
T Consensus 88 ~la~~l~~~ly~~r~~P~~v~~ivaG~D~-~g~p~Ly~~dp~G~~~~~~~~a~Gsg~~~a~~~Le~~~~~~~~~~~~~~~ 166 (222)
T 1ryp_M 88 SAARNIQHLLYGKRFFPYYVHTIIAGLDE-DGKGAVYSFDPVGSYEREQCRAGGAAASLIMPFLDNQVNFKNQYEPGTNG 166 (222)
T ss_dssp HHHHHHHHHHHTTTTSCCCEEEEEEEECT-TSCEEEEEECTTSCEEEESEEEEETTHHHHHHHHHHHTSCTTCBCTTSTT
T ss_pred HHHHHHHHHHHhcCCCCceEEEEEEEEcC-CCCeEEEEECCCcCEEecCEEEEcCcHHHHHHHHhccccccccccccccc
Confidence 3567899999999888987754 6795 5569999999999999999999999999999999998
Q ss_pred ----CCCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCeEEeecccccc
Q psy7294 68 ----YKPDLTVQEAYSVLKQCVHHMKRRTVLSYPKFTVKVLDRTGTVNVLQDLKYS 119 (123)
Q Consensus 68 ----y~~~mt~eEAi~L~~k~i~~a~~Rd~~s~~~~~V~vI~kdG~~~l~~~~k~~ 119 (123)
|+++||+|||++|+++||.++.+||+.++++++|.+|+++|++.....+|.|
T Consensus 167 ~~~~~~~~~s~eeA~~la~~al~~a~~rd~~sg~~i~v~vi~~~g~~~~~~~~r~d 222 (222)
T 1ryp_M 167 KVKKPLKYLSVEEVIKLVRDSFTSATERHIQVGDGLEILIVTKDGVRKEFYELKRD 222 (222)
T ss_dssp CSBCCCCCCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTEEEEEEEECCCC
T ss_pred ccccCCCCCCHHHHHHHHHHHHHHHHHhcccCCCcEEEEEEcCCCeEEEEeeccCC
Confidence 8899999999999999999999999999999999999999999999888875
No 2
>1iru_M 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_L* 3une_L 3unf_L* 3unh_L
Probab=99.93 E-value=7.4e-26 Score=169.58 Aligned_cols=115 Identities=16% Similarity=0.172 Sum_probs=105.6
Q ss_pred cccchhhHHHhhhccccccccc---ceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHcc---------CCCC
Q psy7294 4 QNSNSLTPILFMNKTLALNSKK---WTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKY---------YKPD 71 (123)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~---~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~---------y~~~ 71 (123)
..+++|++++|.++..||.+.. |+|+ +++|+||++||+|++.+++++|+|+|+.+++++||+. |+++
T Consensus 87 ~la~~l~~~~y~~r~~P~~v~~lvaG~D~-~g~p~Ly~id~~G~~~~~~~~aiGsg~~~a~~~Le~~~~~~~~~~~~~~~ 165 (213)
T 1iru_M 87 AIAAMLSTILYSRRFFPYYVYNIIGGLDE-EGKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVEHVP 165 (213)
T ss_dssp HHHHHHHHHHHHTTTSCCCEEEEEEEECT-TSCEEEEEECTTSCEEEESEEEEETTHHHHHHHHHHHTTCCSCSSCCCCC
T ss_pred HHHHHHHHHHHhhCCCCceEEEEEEEEcC-CCCEEEEEECCCCCEEECCEEEEeeCHHHHHHHHhhccccccccccCCCC
Confidence 4567899999998888988754 6795 5569999999999999999999999999999999999 8899
Q ss_pred CCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCeEEeecccccc
Q psy7294 72 LTVQEAYSVLKQCVHHMKRRTVLSYPKFTVKVLDRTGTVNVLQDLKYS 119 (123)
Q Consensus 72 mt~eEAi~L~~k~i~~a~~Rd~~s~~~~~V~vI~kdG~~~l~~~~k~~ 119 (123)
||.|||++++++||.++.+||+.++++++|.+|+++|++.....+|.|
T Consensus 166 ~s~eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~~~~~~r~d 213 (213)
T 1iru_M 166 LSLDRAMRLVKDVFISAAERDVYTGDALRICIVTKEGIREETVSLRKD 213 (213)
T ss_dssp CCHHHHHHHHHHHHHHHHHHBTTSCSEEEEEEEETTEEEEEEEECCCC
T ss_pred CCHHHHHHHHHHHHHHHHHhCCccCCcEEEEEEcCCCeEEEEeecCCC
Confidence 999999999999999999999999999999999999999998888865
No 3
>3h4p_a Proteasome subunit beta; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=99.93 E-value=1.4e-25 Score=169.46 Aligned_cols=110 Identities=18% Similarity=0.253 Sum_probs=102.3
Q ss_pred cccchhhHHHhhhccccccccc---ceeCCCCceEEEEECCCCceeeeC-eEEEcccHHHHHHHHHccCCCCCCHHHHHH
Q psy7294 4 QNSNSLTPILFMNKTLALNSKK---WTDCNTFGVTLYKGDPYGFMLEVP-YAYIGINGFLTASLVDKYYKPDLTVQEAYS 79 (123)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~---~~D~~~~gP~Ly~iD~~Gs~~~~~-~~a~G~Gs~~~~~~Ld~~y~~~mt~eEAi~ 79 (123)
..+++|++++++++..||.+.. |||+ .+||+||++||+|++.+++ ++|+|+|+.+++++||+.|+++||.|||++
T Consensus 79 ~la~~l~~~~~~~~~~P~~v~~lvaG~D~-~~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~~ms~eea~~ 157 (219)
T 3h4p_a 79 ACATLLSNILHSSRMFPFLTQIIIGGYDL-LEGAKLFSLDPLGGMNEEKTFTATGSGSPIAYGVLEAGYDRDMSVEEGIK 157 (219)
T ss_dssp HHHHHHHHHHHHTTTTTCCCCCEEEEEET-TTEEEEEEECSSCCEEECSSEEEESTTHHHHHHHHHTSCCTTCCHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCceEEEEEEEEeC-CCCcEEEEECCCCceEecCCEEEEcCCHHHHHHHHHHhcCCCCCHHHHHH
Confidence 4578899999998888988754 6895 5789999999999999999 999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccccCCcEEEEEEcCCCeEEeec
Q psy7294 80 VLKQCVHHMKRRTVLSYPKFTVKVLDRTGTVNVLQ 114 (123)
Q Consensus 80 L~~k~i~~a~~Rd~~s~~~~~V~vI~kdG~~~l~~ 114 (123)
++++||..+.+||..++++++|++|+++|++.++.
T Consensus 158 la~~al~~~~~rd~~sg~~i~v~vi~~~g~~~l~~ 192 (219)
T 3h4p_a 158 LALNALKSAMERDTFSGNGISLAVITKDGVKIFED 192 (219)
T ss_dssp HHHHHHHHHHTSCSSCCSCCCEEEEETTEEEECCH
T ss_pred HHHHHHHHHHhhcCCCCCcEEEEEEeCCCeEEcCH
Confidence 99999999999999999999999999999998864
No 4
>1iru_J 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_I* 3une_I 3unf_I* 3unh_I
Probab=99.93 E-value=3.7e-25 Score=164.89 Aligned_cols=116 Identities=10% Similarity=0.151 Sum_probs=104.3
Q ss_pred cccchhhHHHhhhccccccccc---ceeCCCCceEEEEECCCCceeee-CeEEEcccHHHHHHHHHccCCCCCCHHHHHH
Q psy7294 4 QNSNSLTPILFMNKTLALNSKK---WTDCNTFGVTLYKGDPYGFMLEV-PYAYIGINGFLTASLVDKYYKPDLTVQEAYS 79 (123)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~---~~D~~~~gP~Ly~iD~~Gs~~~~-~~~a~G~Gs~~~~~~Ld~~y~~~mt~eEAi~ 79 (123)
..+++|++++|.++..||.+.. |||+.++||+||++||+|++.++ +++|+|+|+.+++++||+.|+++||.|||++
T Consensus 86 ~la~~l~~~~y~~r~~P~~v~~lvaG~D~~~~~p~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~~~s~eea~~ 165 (205)
T 1iru_J 86 TLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPFICSLDLIGCPMVTDDFVVSGTCAEQMYGMCESLWEPNMDPDHLFE 165 (205)
T ss_dssp HHHHHHHHHHHTTTTSCCSCCCEEEEECTTSCCEEEEEECTTCCEEECSSEEEEETTHHHHHHHHHHHCCSSCCHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCceEEEEEEEEeCCCCCeEEEEECCCCCccccCCeeEeeeCHHHHHHHHhcccCCCCCHHHHHH
Confidence 3578899999998877887744 67954568999999999999665 5699999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccccCCcEEEEEEcCCCeEEeecccccc
Q psy7294 80 VLKQCVHHMKRRTVLSYPKFTVKVLDRTGTVNVLQDLKYS 119 (123)
Q Consensus 80 L~~k~i~~a~~Rd~~s~~~~~V~vI~kdG~~~l~~~~k~~ 119 (123)
++++||.++.+||+.++++++|.+|+++|++.....+|.|
T Consensus 166 l~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~~~~~~r~d 205 (205)
T 1iru_J 166 TISQAMLNAVDRDAVSGMGVIVHIIEKDKITTRTLKARMD 205 (205)
T ss_dssp HHHHHHHHHGGGBTTSCSCEEEEEEESSBEEEEEBCCCCC
T ss_pred HHHHHHHHHHHhCcccCCceEEEEEcCCCEEEEEeecCCC
Confidence 9999999999999999999999999999999988888865
No 5
>1ryp_J 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_I* 1g65_I 1vsy_J 2f16_I* 2fak_I* 2fny_I* 2gpl_I* 3d29_I* 3dy3_I* 3dy4_I* 3e47_I* 3gpj_I* 3gpt_I* 3gpw_I* 3hye_I* 3l5q_N 3mg0_I* 3mg4_I* 3oeu_I* 3oev_I* ...
Probab=99.93 E-value=4.4e-25 Score=164.38 Aligned_cols=116 Identities=12% Similarity=0.124 Sum_probs=104.3
Q ss_pred cccchhhHHHhhhccccccccc---ceeCCCCceEEEEECCCCceeee-CeEEEcccHHHHHHHHHccCCCCCCHHHHHH
Q psy7294 4 QNSNSLTPILFMNKTLALNSKK---WTDCNTFGVTLYKGDPYGFMLEV-PYAYIGINGFLTASLVDKYYKPDLTVQEAYS 79 (123)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~---~~D~~~~gP~Ly~iD~~Gs~~~~-~~~a~G~Gs~~~~~~Ld~~y~~~mt~eEAi~ 79 (123)
..++++++++|.++..||.+.. |||+.++||+||++||+|++.++ +++|+|+|+.+++++||+.|+++||.|||++
T Consensus 85 ~la~~l~~~~y~~~~~P~~v~~lvaG~D~~~~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~~~s~eea~~ 164 (204)
T 1ryp_J 85 TFTQLVSSSLYERRFGPYFVGPVVAGINSKSGKPFIAGFDLIGCIDEAKDFIVSGTASDQLFGMCESLYEPNLEPEDLFE 164 (204)
T ss_dssp HHHHHHHHHHHTTTTSCCCEEEEEEEECTTTCCEEEEEECTTCCEECCSSEEEEETTHHHHHHHHHHHCCSSCCHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCceEEEEEEEEeCCCCceEEEEECCCCCccccCceeEeccCHHHHHHHHhhhcCCCcCHHHHHH
Confidence 3578899999998877887754 67954578999999999999666 5799999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccccCCcEEEEEEcCCCeEEeecccccc
Q psy7294 80 VLKQCVHHMKRRTVLSYPKFTVKVLDRTGTVNVLQDLKYS 119 (123)
Q Consensus 80 L~~k~i~~a~~Rd~~s~~~~~V~vI~kdG~~~l~~~~k~~ 119 (123)
++++||..+.+||+.++++++|.+|+++|++.....+|.|
T Consensus 165 l~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~~~~~~r~d 204 (204)
T 1ryp_J 165 TISQALLNAADRDALSGWGAVVYIIKKDEVVKRYLKMRQD 204 (204)
T ss_dssp HHHHHHHHHHTTBTTSCSCEEEEEEESSCEEEEEECCCCC
T ss_pred HHHHHHHHHHHhCcccCCcEEEEEEcCCCEEEEEeecCCC
Confidence 9999999999999999999999999999999988888865
No 6
>1j2q_H Proteasome beta subunit; ubiquitin, CP, hydrolase; HET: CIB; 2.83A {Archaeoglobus fulgidus} SCOP: d.153.1.4
Probab=99.93 E-value=3e-25 Score=165.05 Aligned_cols=110 Identities=15% Similarity=0.174 Sum_probs=101.2
Q ss_pred ccccchhhHHHhhhccccccccc---ceeCCCCceEEEEECCCCceeeeC-eEEEcccHHHHHHHHHccCCCCCCHHHHH
Q psy7294 3 RQNSNSLTPILFMNKTLALNSKK---WTDCNTFGVTLYKGDPYGFMLEVP-YAYIGINGFLTASLVDKYYKPDLTVQEAY 78 (123)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~---~~D~~~~gP~Ly~iD~~Gs~~~~~-~~a~G~Gs~~~~~~Ld~~y~~~mt~eEAi 78 (123)
++.+++|++++++++.+||.+.. |||+ +||+||++||+|++.+++ ++|+|+|+.+++++||+.|+++||.|||+
T Consensus 77 ~~~a~~l~~~~~~~r~rp~~~~~lvaG~D~--~gp~Ly~id~~G~~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s~eea~ 154 (202)
T 1j2q_H 77 RAIATLTSNLLNSYRYFPYLVQLLIGGIDS--EGKSIYSIDPIGGAIEEKDIVATGSGSLTAYGVLEDRFTPEIGVDEAV 154 (202)
T ss_dssp HHHHHHHHHHHHHTTTSCCCEEEEEEEEET--TEEEEEEECTTCCEEEESSEEEESTTHHHHHHHHHHHCCTTCCHHHHH
T ss_pred HHHHHHHHHHHHhhCCCCceEEEEEEEEeC--CCCEEEEECCCCCeeecCCEEEEcCCHHHHHHHHHhhcCCCcCHHHHH
Confidence 34578899999998888988754 6794 689999999999999999 99999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccccCCcEEEEEEcCCCeEEeec
Q psy7294 79 SVLKQCVHHMKRRTVLSYPKFTVKVLDRTGTVNVLQ 114 (123)
Q Consensus 79 ~L~~k~i~~a~~Rd~~s~~~~~V~vI~kdG~~~l~~ 114 (123)
+++++||..+.+||..++++++|.+|+++|++.++.
T Consensus 155 ~la~~al~~~~~~d~~s~~~i~v~vi~~~g~~~l~~ 190 (202)
T 1j2q_H 155 ELAVRAIYSAMKRDSASGDGIDVVKITEDEFYQYSP 190 (202)
T ss_dssp HHHHHHHHHHHTTCTTSCSCEEEEEECSSCEEECHH
T ss_pred HHHHHHHHHHHhcCCCCCCcEEEEEEeCCCeEEeCH
Confidence 999999999999999999999999999999888753
No 7
>1iru_L 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_K* 3une_K 3unf_K* 3unh_K
Probab=99.92 E-value=1e-24 Score=162.35 Aligned_cols=109 Identities=20% Similarity=0.240 Sum_probs=99.9
Q ss_pred cccchhhHHHhhhccccccccc---ceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCCCCCCHHHHHHH
Q psy7294 4 QNSNSLTPILFMNKTLALNSKK---WTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEAYSV 80 (123)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~---~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~~mt~eEAi~L 80 (123)
..+++++++++.++..||.+.. |||+ +||+||++||+|++.++++.|+|+|+.+++++||+.|+++||.|||+++
T Consensus 78 ~la~~l~~~~~~~r~~~~~v~~lvaG~D~--~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~s~eea~~l 155 (204)
T 1iru_L 78 AASKLLANMVYQYKGMGLSMGTMICGWDK--RGPGLYYVDSEGNRISGATFSVGSGSVYAYGVMDRGYSYDLEVEQAYDL 155 (204)
T ss_dssp HHHHHHHHHHHTTTTSCCCBEEEEEEECS--SSEEEEEEESSSCEEECSEEEESTTHHHHHHHHHTTCCTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCeeEEEEEEEEeC--CCCEEEEECCCCcEEEeCCEEEEcCHHHHHHHHhccCCCCCCHHHHHHH
Confidence 3568899999998888887643 6794 6899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccccCCcEEEEEEcCCCeEEeec
Q psy7294 81 LKQCVHHMKRRTVLSYPKFTVKVLDRTGTVNVLQ 114 (123)
Q Consensus 81 ~~k~i~~a~~Rd~~s~~~~~V~vI~kdG~~~l~~ 114 (123)
+++||..+.+||+.++++++|.+|+++|++.++.
T Consensus 156 ~~~al~~~~~rd~~s~~~i~v~vi~~~g~~~l~~ 189 (204)
T 1iru_L 156 ARRAIYQATYRDAYSGGAVNLYHVREDGWIRVSS 189 (204)
T ss_dssp HHHHHHHHHHHBTTCCSEEEEEEECSSCEEEEEE
T ss_pred HHHHHHHHHHhCccCCCceEEEEEeCCceEEeCH
Confidence 9999999999999999999999999999887753
No 8
>1ryp_K 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_K 1g0u_J* 1jd2_J* 1g65_J 1vsy_K 1z7q_K 2f16_J* 2fak_J* 2fny_J* 2gpl_J* 2zcy_J* 3bdm_J* 3d29_J* 3dy3_J* 3dy4_J* 3e47_J* 3gpj_J* 3gpt_J* 3gpw_J* 3hye_J* ...
Probab=99.92 E-value=9.8e-25 Score=161.67 Aligned_cols=111 Identities=29% Similarity=0.454 Sum_probs=98.8
Q ss_pred cccchhhHHHhhh-cc-ccccccc---ceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCCCCCCHHHHH
Q psy7294 4 QNSNSLTPILFMN-KT-LALNSKK---WTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEAY 78 (123)
Q Consensus 4 ~~~~~~~~~~~~~-~~-~~~~~~~---~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~~mt~eEAi 78 (123)
..++++++++++. +. .||.+.. |||+.++||+||++||+|++.+++++|+|+|+.+++++||+.|+++||.|||+
T Consensus 79 ~la~~l~~~l~~~~~~r~p~~v~~lvaG~D~~~~~p~Ly~idp~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s~eea~ 158 (198)
T 1ryp_K 79 AVSSFVRQELAKSIRSRRPYQVNVLIGGYDKKKNKPELYQIDYLGTKVELPYGAHGYSGFYTFSLLDHHYRPDMTTEEGL 158 (198)
T ss_dssp HHHHHHHHHHHHHTTSSSCCCEEEEEEEEETTTTEEEEEEECTTCCEEECSEEECTTHHHHHHHHHHHHCCTTCCHHHHH
T ss_pred HHHHHHHHHHHHhcccCCCceEEEEEEEEeCCCCCcEEEEECCCCCEEECCEEEEcccHHHHHHHHHhhcCCCCCHHHHH
Confidence 3567888888774 23 3877744 67953468999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccccCCcEEEEEEcCCCeEEeec
Q psy7294 79 SVLKQCVHHMKRRTVLSYPKFTVKVLDRTGTVNVLQ 114 (123)
Q Consensus 79 ~L~~k~i~~a~~Rd~~s~~~~~V~vI~kdG~~~l~~ 114 (123)
+++++|+.++.+||+.++++++|.+|+++|++.++.
T Consensus 159 ~l~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~~~~ 194 (198)
T 1ryp_K 159 DLLKLCVQELEKRMPMDFKGVIVKIVDKDGIRQVDD 194 (198)
T ss_dssp HHHHHHHHHHHHHCSBCCCCEEEEEEETTEEEEECC
T ss_pred HHHHHHHHHHHHhCccCCCceEEEEEcCCCEEEecc
Confidence 999999999999999999999999999999988764
No 9
>3nzj_K Proteasome component PRE2; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_K* 3nzx_K* 4b4t_5
Probab=99.92 E-value=1.5e-24 Score=170.79 Aligned_cols=110 Identities=20% Similarity=0.176 Sum_probs=101.9
Q ss_pred cccchhhHHHhhhcccccccc---cceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCCCCCCHHHHHHH
Q psy7294 4 QNSNSLTPILFMNKTLALNSK---KWTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEAYSV 80 (123)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~---~~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~~mt~eEAi~L 80 (123)
..+++|+++++.++..||.+. .|||+ ++||+||++||.|++.+++++|+|+|+.+++++||+.|+++||.|||+++
T Consensus 153 ~la~~ls~~l~~~r~~p~~v~~lvaG~D~-~~gp~Ly~iDp~G~~~~~~~~AiGsgs~~a~~~Le~~y~~dms~eEAi~l 231 (287)
T 3nzj_K 153 AASKILSNLVYQYKGAGLSMGTMICGYTR-KEGPTIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSNYKWDLSVEDALYL 231 (287)
T ss_dssp HHHHHHHHHHHHTTTSCCCEEEEEEEEET-TTEEEEEEEETTCCEEECSEEEESTTHHHHHHHHHTSCCTTCCHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCceEEEEEEEEcC-CCCCEEEEECCCceEEEcCeEEEecchHHHHHHHHHhhcCCCCHHHHHHH
Confidence 357889999999988888763 36796 67899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccccCCcEEEEEEcCCCeEEeec
Q psy7294 81 LKQCVHHMKRRTVLSYPKFTVKVLDRTGTVNVLQ 114 (123)
Q Consensus 81 ~~k~i~~a~~Rd~~s~~~~~V~vI~kdG~~~l~~ 114 (123)
+++||..+.+||+.++++++|.+|+++|++.++.
T Consensus 232 a~~aL~~a~~rD~~sg~~i~V~vItkdg~~~l~~ 265 (287)
T 3nzj_K 232 GKRSILAAAHRDAYSGGSVNLYHVTEDGWIYHGN 265 (287)
T ss_dssp HHHHHHHHHHHBTTCCSEEEEEEEETTEEEEEEE
T ss_pred HHHHHHHHHhhCcCCCCceEEEEEeCCCEEEeCH
Confidence 9999999999999999999999999999888763
No 10
>3unf_H Proteasome subunit beta type-10; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_H
Probab=99.91 E-value=2.4e-24 Score=164.96 Aligned_cols=110 Identities=17% Similarity=0.195 Sum_probs=97.8
Q ss_pred cccchhhHHHhhhcccccccc---cceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCCCCCCHHHHHHH
Q psy7294 4 QNSNSLTPILFMNKTLALNSK---KWTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEAYSV 80 (123)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~---~~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~~mt~eEAi~L 80 (123)
..+++|++++++.+ .||.+. .|+|+ +||+||++||+|++.+++++|+|+|+.+++++||+.|+++||+|||+++
T Consensus 78 ~la~~l~~~l~~~~-~p~~v~llvaG~D~--~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeA~~l 154 (234)
T 3unf_H 78 TVTRILRQTLFRYQ-GHVGASLVVGGVDL--NGPQLYEVHPHGSYSRLPFTALGSGQGAAVALLEDRFQPNMTLEAAQEL 154 (234)
T ss_dssp HHHHHHHHHHHHTT-TCSCEEEEEEEEET--TEEEEEEECTTSCEEECSEEEEETTHHHHHHHHHHHCCSSCCHHHHHHH
T ss_pred HHHHHHHHHHHhcC-CCccEEEEEEEEeC--CCCEEEEECCCCCEEeccEEEEcCCchhhHHHHHhccCCCCCHHHHHHH
Confidence 35678888887643 356543 36794 6899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccccCCcEEEEEEcCCCeEEeeccc
Q psy7294 81 LKQCVHHMKRRTVLSYPKFTVKVLDRTGTVNVLQDL 116 (123)
Q Consensus 81 ~~k~i~~a~~Rd~~s~~~~~V~vI~kdG~~~l~~~~ 116 (123)
+++||..+.+||..++++++|++|+++|++.++..-
T Consensus 155 a~~al~~~~~~D~~sg~~iev~vi~~dg~~~l~~~~ 190 (234)
T 3unf_H 155 LVEAITAGILSDLGSGGNVDACVITAGGAKLQRALS 190 (234)
T ss_dssp HHHHHHHHHHHBTTCCSCEEEEEEESSCEEEEEEEE
T ss_pred HHHHHHHHHhhcCCCCCcEEEEEEECCCEEEeCcee
Confidence 999999999999999999999999999999887543
No 11
>1ryp_L 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_L 1vsy_L 1z7q_L 3l5q_P 1g65_K* 1g0u_K* 1jd2_K* 2f16_K* 2fak_K* 2fny_K* 2gpl_K* 2zcy_K* 3bdm_K* 3d29_K* 3dy3_K* 3dy4_K* 3e47_K* 3gpj_K* 3gpt_K* 3gpw_K* ...
Probab=99.91 E-value=2.6e-24 Score=161.23 Aligned_cols=110 Identities=20% Similarity=0.185 Sum_probs=100.5
Q ss_pred cccchhhHHHhhhccccccccc---ceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCCCCCCHHHHHHH
Q psy7294 4 QNSNSLTPILFMNKTLALNSKK---WTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEAYSV 80 (123)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~---~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~~mt~eEAi~L 80 (123)
..+++++++++.++..||.+.. |||+ ++||+||++||+|++.+++++|+|+|+.+++++||+.|+++||.|||+++
T Consensus 78 ~la~~l~~~~~~~~~~p~~v~~lvaG~D~-~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~s~eea~~l 156 (212)
T 1ryp_L 78 AASKILSNLVYQYKGAGLSMGTMICGYTR-KEGPTIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSNYKWDLSVEDALYL 156 (212)
T ss_dssp HHHHHHHHHHHHTTTSCCCBEEEEEEEET-TTEEEEEEEETTCCEEECSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHH
T ss_pred HHHHHHHHHHHhhCCCCceEEEEEEEEeC-CCCCEEEEEcCCceeEecCCEEEcCCHHHHHHHHHhhCCCCCCHHHHHHH
Confidence 4568889999888777877743 6796 56899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccccCCcEEEEEEcCCCeEEeec
Q psy7294 81 LKQCVHHMKRRTVLSYPKFTVKVLDRTGTVNVLQ 114 (123)
Q Consensus 81 ~~k~i~~a~~Rd~~s~~~~~V~vI~kdG~~~l~~ 114 (123)
+++||..+.+||..++++++|.+|+++|++.++.
T Consensus 157 a~~al~~~~~rd~~s~~~i~v~vi~~~g~~~~~~ 190 (212)
T 1ryp_L 157 GKRSILAAAHRDAYSGGSVNLYHVTEDGWIYHGN 190 (212)
T ss_dssp HHHHHHHHHHHBTTCCSEEEEEEEETTEEEEEEE
T ss_pred HHHHHHHHHHhccccCCceEEEEEcCCceEEECH
Confidence 9999999999999999999999999999887763
No 12
>1yar_H Proteasome beta subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_H 1yau_H 3ipm_H 1pma_B 3jrm_H 3c92_H 3c91_H 3jse_H 3jtl_H
Probab=99.91 E-value=2.3e-24 Score=162.55 Aligned_cols=108 Identities=20% Similarity=0.218 Sum_probs=99.6
Q ss_pred cccchhhHHHhhhccccccccc---ceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCCCCCCHHHHHHH
Q psy7294 4 QNSNSLTPILFMNKTLALNSKK---WTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEAYSV 80 (123)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~---~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~~mt~eEAi~L 80 (123)
+.+++|++++++++.+||.+.. ||| +||+||++||+|++.+++++|+|+|+.+++++||+.|+++||.|||+++
T Consensus 86 ~la~~l~~~~~~~r~rp~~v~~lvaG~D---~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~s~eea~~l 162 (217)
T 1yar_H 86 AVATLLSNMLNQVKYMPYMVQLLVGGID---TAPHVFSIDAAGGSVEDIYASTGSGSPFVYGVLESQYSEKMTVDEGVDL 162 (217)
T ss_dssp HHHHHHHHHHHHTTTSCCCEEEEEEEES---SSEEEEEECTTCCEEEESEEEESTTHHHHHHHHHHHCCTTCCHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCceEEEEEEEEC---CCCEEEEECCCCCeEecCEEEEcCCHHHHHHHHHhhcccCCCHHHHHHH
Confidence 4578899999998888988754 678 5799999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccccCCcEEEEEEcC-CCeEEeec
Q psy7294 81 LKQCVHHMKRRTVLSYPKFTVKVLDR-TGTVNVLQ 114 (123)
Q Consensus 81 ~~k~i~~a~~Rd~~s~~~~~V~vI~k-dG~~~l~~ 114 (123)
+++||..+.+||+.++++++|.+|++ +|++.++.
T Consensus 163 a~~al~~~~~rd~~s~~~i~v~vi~~~~g~~~~~~ 197 (217)
T 1yar_H 163 VIRAISAAKQRDSASGGMIDVAVITRKDGYVQLPT 197 (217)
T ss_dssp HHHHHHHHHHHCTTCCSCCEEEEEETTTEEEECCH
T ss_pred HHHHHHHHHhccCCCCCcEEEEEEECCCCEEEcCH
Confidence 99999999999999999999999999 88887653
No 13
>1iru_N 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_M* 3une_M 3unf_M* 3unh_M
Probab=99.91 E-value=3e-24 Score=161.57 Aligned_cols=110 Identities=18% Similarity=0.170 Sum_probs=100.0
Q ss_pred cccchhhHHHhhhc--cccccccc---ceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCCC--CCCHHH
Q psy7294 4 QNSNSLTPILFMNK--TLALNSKK---WTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKP--DLTVQE 76 (123)
Q Consensus 4 ~~~~~~~~~~~~~~--~~~~~~~~---~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~--~mt~eE 76 (123)
..+++|++++|.++ ..||.+.. |+|+ +||+||++||+|++.+++++|+|+|+.+++++||+.|++ +||.||
T Consensus 87 ~la~~l~~~ly~~r~~~~P~~v~~lvaG~D~--~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~~mt~ee 164 (219)
T 1iru_N 87 AIHSWLTRAMYSRRSKMNPLWNTMVIGGYAD--GESFLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPVLSQTE 164 (219)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCEEEEEEEEET--TEEEEEEECSSCCEEECSEEECTTHHHHTHHHHHHHHTSCSCCCHHH
T ss_pred HHHHHHHHHHHHhcccCCCceEEEEEEEEEC--CCCEEEEECCCCCeEECCeEEECccHHHHHHHHHhhcCCCCCCCHHH
Confidence 35678899998866 67877743 6794 589999999999999999999999999999999999999 999999
Q ss_pred HHHHHHHHHHHHHhcccccCCcEEEEEEcCCCeEEeecc
Q psy7294 77 AYSVLKQCVHHMKRRTVLSYPKFTVKVLDRTGTVNVLQD 115 (123)
Q Consensus 77 Ai~L~~k~i~~a~~Rd~~s~~~~~V~vI~kdG~~~l~~~ 115 (123)
|++++++||..+.+||+.++++++|.+|+++|++.++..
T Consensus 165 a~~l~~~al~~~~~~d~~sg~~i~v~vi~~~g~~~~~~~ 203 (219)
T 1iru_N 165 ARDLVERCMRVLYYRDARSYNRFQTATVTEKGVEIEGPL 203 (219)
T ss_dssp HHHHHHHHHHHHHHHBTTCCSCEEEEEEETTEEEEEEEE
T ss_pred HHHHHHHHHHHHHHhcCcCCCcEEEEEEcCCCEEEcCCe
Confidence 999999999999999999999999999999999888754
No 14
>1ryp_H 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 3nzj_N* 3nzw_N* 3nzx_N* 1vsy_H 3l5q_B 1g65_N* 1fnt_H 1g0u_N* 1jd2_N* 1z7q_H 2f16_N* 2fak_N* 2fny_N* 2gpl_N* 2zcy_N* 3bdm_N* 3d29_N* 3dy3_N* 3dy4_N* 3e47_N* ...
Probab=99.91 E-value=4.8e-24 Score=159.04 Aligned_cols=109 Identities=17% Similarity=0.197 Sum_probs=97.1
Q ss_pred cccchhhHHHhhhcccccccc---cceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCCCCCCHHHHHHH
Q psy7294 4 QNSNSLTPILFMNKTLALNSK---KWTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEAYSV 80 (123)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~---~~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~~mt~eEAi~L 80 (123)
..+++|+++++.++.. |.+. .|||+ ++||+||++||+|++.+++++|+|+|+.+++++||+.|+++||.|||+++
T Consensus 86 ~la~~l~~~~~~~~~~-~~~~~lvaG~D~-~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~s~eea~~l 163 (205)
T 1ryp_H 86 TAASVFKELCYENKDN-LTAGIIVAGYDD-KNKGEVYTIPLGGSVHKLPYAIAGSGSTFIYGYCDKNFRENMSKEETVDF 163 (205)
T ss_dssp HHHHHHHHHHHHTTTT-CCEEEEEEEEET-TTEEEEEEECTTSCCEEESEEEESGGGGGGHHHHHHHCCTTCCHHHHHHH
T ss_pred HHHHHHHHHHHhhhcC-ceEEEEEEEEec-CCCcEEEEECCCccEEecCEEEEEecHHHHHHHHHhccCCCCCHHHHHHH
Confidence 3567889999887654 4443 36795 57899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccccCCcEEEEEEcCCCeEEeec
Q psy7294 81 LKQCVHHMKRRTVLSYPKFTVKVLDRTGTVNVLQ 114 (123)
Q Consensus 81 ~~k~i~~a~~Rd~~s~~~~~V~vI~kdG~~~l~~ 114 (123)
+++||.++.+||+.++++++|.+|+++|++....
T Consensus 164 ~~~al~~a~~~d~~sg~~i~v~vi~~~g~~~~~~ 197 (205)
T 1ryp_H 164 IKHSLSQAIKWDGSSGGVIRMVVLTAAGVERLIF 197 (205)
T ss_dssp HHHHHHHHHHHBTTCCSCEEEEEEETTEEEEEEE
T ss_pred HHHHHHHHHHhCCccCCeEEEEEEcCCCEEEEEe
Confidence 9999999999999999999999999999876543
No 15
>1ryp_I 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1g0u_H* 1jd2_H* 1g65_H 1vsy_I 1z7q_I 2f16_H* 2fak_H* 2fny_H* 2gpl_H* 3d29_H* 3dy3_H* 3dy4_H* 3e47_H* 3gpj_H* 3gpt_H* 3gpw_H* 3hye_H* 3l5q_M 3mg0_H* 3mg4_H* ...
Probab=99.91 E-value=1.1e-23 Score=159.52 Aligned_cols=109 Identities=17% Similarity=0.118 Sum_probs=96.3
Q ss_pred cccchhhHHHhhhcccccccc---cceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCCCCCCHHHHHHH
Q psy7294 4 QNSNSLTPILFMNKTLALNSK---KWTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEAYSV 80 (123)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~---~~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~~mt~eEAi~L 80 (123)
..++++++++++.+ .||.+. .|+|+ +||+||++||+|++.+++++|+|+|+.+++++||+.|+++||+|||+++
T Consensus 78 ~~a~~l~~~l~~~~-~p~~v~~lvaG~D~--~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeA~~l 154 (222)
T 1ryp_I 78 SALQMLKQHLFKYQ-GHIGAYLIVAGVDP--TGSHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHWKQDLTKEEAIKL 154 (222)
T ss_dssp HHHHHHHHHHHHTT-TCSCEEEEEEEEET--TEEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHHCCSSCCHHHHHHH
T ss_pred HHHHHHHHHHhhcC-CCCCeeEEEEEEeC--CCCEEEEECCCCCEEecCEEEECCCHHHHHHHHHhhCCCCcCHHHHHHH
Confidence 34677888876643 466543 36794 6899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccccCCcEEEEEEcCCC-eEEeecc
Q psy7294 81 LKQCVHHMKRRTVLSYPKFTVKVLDRTG-TVNVLQD 115 (123)
Q Consensus 81 ~~k~i~~a~~Rd~~s~~~~~V~vI~kdG-~~~l~~~ 115 (123)
+++||.++.+||..++++++|++|+++| ++.++..
T Consensus 155 a~~al~~~~~~d~~sg~~i~v~vi~~~g~~~~~~~~ 190 (222)
T 1ryp_I 155 ASDAIQAGIWNDLGSGSNVDVCVMEIGKDAEYLRNY 190 (222)
T ss_dssp HHHHHHHHHHHCTTCCSCEEEEEEETTSCEEEEEEE
T ss_pred HHHHHHHHHhccccCCCcEEEEEEECCCCEEEEece
Confidence 9999999999999999999999999999 9887643
No 16
>1ryp_N 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_N* 1jd2_M* 1g65_M 1vsy_N 1z7q_N 2f16_M* 2fak_M* 2fny_M* 2gpl_M* 3d29_M* 3dy3_M* 3dy4_M* 3e47_M* 3gpj_M* 3gpt_M* 3gpw_M* 3hye_M* 3l5q_R 3mg0_M* 3mg4_M* ...
Probab=99.90 E-value=5e-24 Score=162.00 Aligned_cols=110 Identities=15% Similarity=0.148 Sum_probs=99.8
Q ss_pred cccchhhHHHhhhc--cccccccc---ceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCCC-----CCC
Q psy7294 4 QNSNSLTPILFMNK--TLALNSKK---WTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKP-----DLT 73 (123)
Q Consensus 4 ~~~~~~~~~~~~~~--~~~~~~~~---~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~-----~mt 73 (123)
..+++|++++|.++ ..||.+.. |||+ ++||+||++||+|++.+++++|+|+|+.+++++||+.|++ +||
T Consensus 91 ~la~~l~~~ly~~r~~~~P~~v~~lvaG~D~-~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~~~~~ms 169 (233)
T 1ryp_N 91 YIFEYLATVMYQRRSKMNPLWNAIIVAGVQS-NGDQFLRYVNLLGVTYSSPTLATGFGAHMANPLLRKVVDRESDIPKTT 169 (233)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCEEEEEEEECT-TSCEEEEEEETTCCEECCSEEECTHHHHHHHHHHTTTCSSGGGGGGCC
T ss_pred HHHHHHHHHHHHhcCCCCCceEEEEEEEEcC-CCCEEEEEECCCcCeEEcCEEEECcCHHHHHHHHHHhhccccccCCCC
Confidence 35678899998866 56877743 6795 5589999999999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCC-CeEEeec
Q psy7294 74 VQEAYSVLKQCVHHMKRRTVLSYPKFTVKVLDRT-GTVNVLQ 114 (123)
Q Consensus 74 ~eEAi~L~~k~i~~a~~Rd~~s~~~~~V~vI~kd-G~~~l~~ 114 (123)
+|||++++++||..+.+||+.++++++|.+|+++ |++.++.
T Consensus 170 ~eea~~la~~al~~~~~rd~~sg~~i~v~vi~~~~g~~~~~~ 211 (233)
T 1ryp_N 170 VQVAEEAIVNAMRVLYYRDARSSRNFSLAIIDKNTGLTFKKN 211 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTTEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHhcccCCCcEEEEEEECCCCeEEcCh
Confidence 9999999999999999999999999999999999 9888764
No 17
>1iru_K 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_J* 3une_J 3unf_J* 3unh_J
Probab=99.90 E-value=1.1e-23 Score=156.40 Aligned_cols=109 Identities=26% Similarity=0.467 Sum_probs=94.6
Q ss_pred cchhhHHH-hhhcc-ccccccc---ceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCCCCCCHHHHHHH
Q psy7294 6 SNSLTPIL-FMNKT-LALNSKK---WTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEAYSV 80 (123)
Q Consensus 6 ~~~~~~~~-~~~~~-~~~~~~~---~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~~mt~eEAi~L 80 (123)
+++++..+ ++.+. .||.+.. |||+ ++||+||++||.|++.+++++|+|+|+.+++++||+.|+++||.|||+++
T Consensus 81 a~~~~~~l~~~~~~~~p~~~~~lvaG~D~-~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~s~eea~~l 159 (201)
T 1iru_K 81 ANFTRRNLADCLRSRTPYHVNLLLAGYDE-HEGPALYYMDYLAALAKAPFAAHGYGAFLTLSILDRYYTPTISRERAVEL 159 (201)
T ss_dssp HHHHHHHHHHHHTSSSCCCEEEEEEEEET-TTEEEEEEECTTCCEEECSEEEESHHHHHHHHHHHHHCCTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCccEEEEEEEEeC-CCCeEEEEECCCcCeEECCEEEECCcHHHHHHHHHhcccCCCCHHHHHHH
Confidence 34554433 44233 5877743 6795 56899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccccCCcEEEEEEcCCCeEEeecc
Q psy7294 81 LKQCVHHMKRRTVLSYPKFTVKVLDRTGTVNVLQD 115 (123)
Q Consensus 81 ~~k~i~~a~~Rd~~s~~~~~V~vI~kdG~~~l~~~ 115 (123)
+++||.++.+||+.++++++|.+|+++|++.++.+
T Consensus 160 ~~~al~~a~~rd~~sg~~i~v~vi~~~g~~~~~~~ 194 (201)
T 1iru_K 160 LRKCLEELQKRFILNLPTFSVRIIDKNGIHDLDNI 194 (201)
T ss_dssp HHHHHHHHHHTBCBCCCCEEEEEEETTEEECCCCB
T ss_pred HHHHHHHHHhhccccCCceEEEEEcCCCeEEeecc
Confidence 99999999999999999999999999999988754
No 18
>1ryp_A 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_G* 1g65_G 1vsy_A 2f16_G* 2fak_G* 2fny_G* 2gpl_G* 3d29_G* 3dy3_G* 3dy4_G* 3e47_G* 3gpj_G* 3gpt_G* 3gpw_G* 3hye_G* 3l5q_A 3mg0_G* 3mg4_G* 3oeu_G* 3oev_G* ...
Probab=99.90 E-value=7e-24 Score=162.09 Aligned_cols=108 Identities=12% Similarity=0.151 Sum_probs=98.4
Q ss_pred cccchhhHHH--hhhc--cccccccc---ceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCCC------
Q psy7294 4 QNSNSLTPIL--FMNK--TLALNSKK---WTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKP------ 70 (123)
Q Consensus 4 ~~~~~~~~~~--~~~~--~~~~~~~~---~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~------ 70 (123)
..+++|++++ |.++ ..||.+.. |||+ .+||+||++||+|++.+++++|+|+|+.+++++||+.|++
T Consensus 107 ~la~~l~~~l~~y~~~~~~rP~~v~~lvaG~D~-~~gp~Ly~~dp~G~~~~~~~~a~G~gs~~a~~~Le~~~~~~~~~~~ 185 (243)
T 1ryp_A 107 VLAKRMANLSQIYTQRAYMRPLGVILTFVSVDE-ELGPSIYKTDPAGYYVGYKATATGPKQQEITTNLENHFKKSKIDHI 185 (243)
T ss_dssp HHHHHHHHHHHHHHHBTTSCCCSCEEEEEEEET-TTEEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHHHHHCSSSC
T ss_pred HHHHHHHHHHHHHhccCCccccceEEEEEEEcC-CCCcEEEEEcCCCCEEEEEEEEECCCcHHHHHHHHHHhhhcccccc
Confidence 4578899999 7776 67887743 7895 5789999999999999999999999999999999999999
Q ss_pred -CCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCeEEee
Q psy7294 71 -DLTVQEAYSVLKQCVHHMKRRTVLSYPKFTVKVLDRTGTVNVL 113 (123)
Q Consensus 71 -~mt~eEAi~L~~k~i~~a~~Rd~~s~~~~~V~vI~kdG~~~l~ 113 (123)
+||+|||++++++||..+.+|| .++++++|++|+++|++.++
T Consensus 186 ~~ms~eea~~l~~~al~~~~~rd-~s~~~iev~vi~~~g~~~l~ 228 (243)
T 1ryp_A 186 NEESWEKVVEFAITHMIDALGTE-FSKNDLEVGVATKDKFFTLS 228 (243)
T ss_dssp CCSSHHHHHHHHHHHHHHHHTCC-CCTTSEEEEEEETTEEEECC
T ss_pred cCCCHHHHHHHHHHHHHHHhccc-CCCCcEEEEEEECCCeEECC
Confidence 9999999999999999999999 89999999999999977765
No 19
>1iru_H 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_N* 3une_N
Probab=99.90 E-value=2.3e-23 Score=155.14 Aligned_cols=105 Identities=15% Similarity=0.140 Sum_probs=95.8
Q ss_pred cccchhhHHHhhhccccccccc---ceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCCCCCCHHHHHHH
Q psy7294 4 QNSNSLTPILFMNKTLALNSKK---WTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEAYSV 80 (123)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~---~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~~mt~eEAi~L 80 (123)
..+++|+++++.++. ||.+.. |||+ ++||+||++||+|++.+++++++|+|+.+++++||+.|+++||.|||+++
T Consensus 78 ~la~~l~~~~~~~~~-p~~~~~lvaG~D~-~~gp~ly~~d~~G~~~~~~~~a~Gsgs~~a~~~Le~~~~~~~s~eea~~l 155 (205)
T 1iru_H 78 TAASLFKEMCYRYRE-DLMAGIIIAGWDP-QEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYREGMTKEECLQF 155 (205)
T ss_dssp HHHHHHHHHHHHTTT-TCCEEEEEEEEET-TTEEEEEEECTTSCCEECSEEEESGGGGGGHHHHHHHCCTTCCHHHHHHH
T ss_pred HHHHHHHHHHHhcCc-CccEEEEEEEEeC-CCCCEEEEECCCCcEEecCEEEECCCHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 356788889887765 877744 6795 57899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccccCCcEEEEEEcCCCeE
Q psy7294 81 LKQCVHHMKRRTVLSYPKFTVKVLDRTGTV 110 (123)
Q Consensus 81 ~~k~i~~a~~Rd~~s~~~~~V~vI~kdG~~ 110 (123)
+++||..+.+||+.++++++|.+|+++|++
T Consensus 156 ~~~al~~~~~~d~~s~~~i~v~vi~~~g~~ 185 (205)
T 1iru_H 156 TANALALAMERDGSSGGVIRLAAIAESGVE 185 (205)
T ss_dssp HHHHHHHHHHHBTTCCSCEEEEEEETTEEE
T ss_pred HHHHHHHHHHhccccCCcEEEEEEeCCCeE
Confidence 999999999999999999999999999864
No 20
>3nzj_H Proteasome component PUP1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_H* 3nzx_H* 4b4t_2
Probab=99.89 E-value=7e-23 Score=159.27 Aligned_cols=107 Identities=17% Similarity=0.130 Sum_probs=94.2
Q ss_pred ccchhhHHHhhhccccccc---ccceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCCCCCCHHHHHHHH
Q psy7294 5 NSNSLTPILFMNKTLALNS---KKWTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEAYSVL 81 (123)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~---~~~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~~mt~eEAi~L~ 81 (123)
.+++|+.++++.+ .||.+ =.|+|+ +||+||++||+|++.+++++|+|+|+.+++++||+.|+++||+|||++++
T Consensus 108 ~a~~l~~~l~~~~-~~~gv~llvaG~D~--~Gp~Ly~iDp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eEA~~la 184 (261)
T 3nzj_H 108 ALQMLKQHLFKYQ-GHIGAYLIVAGVDP--TGSHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHWKQDLTKEEAIKLA 184 (261)
T ss_dssp HHHHHHHHHHHTT-TCSCEEEEEEEEET--TEEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHHCCSSCCHHHHHHHH
T ss_pred HHHHHHHHHHHhc-CcccEEEEEEEEeC--CCCEEEEECCCccEEecCeEEeccchHHHHHHHHHHhccCCCHHHHHHHH
Confidence 4577888887632 24444 347894 68999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccccCCcEEEEEEcCCC-eEEeec
Q psy7294 82 KQCVHHMKRRTVLSYPKFTVKVLDRTG-TVNVLQ 114 (123)
Q Consensus 82 ~k~i~~a~~Rd~~s~~~~~V~vI~kdG-~~~l~~ 114 (123)
++||..+.+||..++++++|++|+++| ++.++.
T Consensus 185 ~~al~~a~~rD~~sg~~iev~vI~kdg~~~~~~~ 218 (261)
T 3nzj_H 185 SDAIQAGIWNDLGSGSNVDVCVMEIGKDAEYLRN 218 (261)
T ss_dssp HHHHHHHHHHCTTCCSCEEEEEEETTSCEEEEEE
T ss_pred HHHHHHHHhhCCCCCCcEEEEEEECCCcEEEecc
Confidence 999999999999999999999999999 666654
No 21
>1iru_B 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_A* 3une_A 3unf_A* 3unh_A
Probab=99.89 E-value=4.4e-23 Score=156.65 Aligned_cols=108 Identities=13% Similarity=0.174 Sum_probs=96.0
Q ss_pred cccchhhHHH--hhh--ccccccccc---ceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCCCCCCHHH
Q psy7294 4 QNSNSLTPIL--FMN--KTLALNSKK---WTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQE 76 (123)
Q Consensus 4 ~~~~~~~~~~--~~~--~~~~~~~~~---~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~~mt~eE 76 (123)
..++++++++ |.+ +..||.+.. ||| ++||+||++||.|++.+++++|+|+|+.+++++||+.|+++||.||
T Consensus 108 ~la~~l~~~~~~y~~~~~~rP~~v~~lvaG~D--~~gp~Ly~id~~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~ms~ee 185 (233)
T 1iru_B 108 QLVQRVASVMQEYTQSGGVRPFGVSLLICGWN--EGRPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNEDLELED 185 (233)
T ss_dssp HHHHHHHHHHHHTTTSBTBCCCSEEEEEEEEC--SSSEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHCCTTCCHHH
T ss_pred HHHHHHHHHHHHhcCcCCCCCcEEEEEEEEEe--CCCCeEEEECCCCCEEEeeEEEECCCCHHHHHHHHHHhccCCCHHH
Confidence 3567888888 443 356777744 678 5689999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcccccCCcEEEEEEcCCCeEEeec
Q psy7294 77 AYSVLKQCVHHMKRRTVLSYPKFTVKVLDRTGTVNVLQ 114 (123)
Q Consensus 77 Ai~L~~k~i~~a~~Rd~~s~~~~~V~vI~kdG~~~l~~ 114 (123)
|++++++||..+.+|| .++++++|.+|+++|++.++.
T Consensus 186 a~~la~~al~~~~~~d-~sg~~i~v~vi~~~g~~~l~~ 222 (233)
T 1iru_B 186 AIHTAILTLKESFEGQ-MTEDNIEVGICNEAGFRRLTP 222 (233)
T ss_dssp HHHHHHHHHHTTCCSC-CCSSSEEEEEEETTEEEECCH
T ss_pred HHHHHHHHHHHHhhcc-CCCCCEEEEEEECCCEEECCH
Confidence 9999999999999999 789999999999999887753
No 22
>1g0u_M Proteasome component PRE4; ubiquitin, degradation, protease, NTN-hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 2zcy_M* 3bdm_M* 3mg6_M* 3mg7_M* 3mg8_M* 3nzj_M* 3nzw_M* 3nzx_M*
Probab=99.89 E-value=3.2e-23 Score=160.96 Aligned_cols=110 Identities=15% Similarity=0.148 Sum_probs=99.7
Q ss_pred cccchhhHHHhhhc--cccccccc---ceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCCC-----CCC
Q psy7294 4 QNSNSLTPILFMNK--TLALNSKK---WTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKP-----DLT 73 (123)
Q Consensus 4 ~~~~~~~~~~~~~~--~~~~~~~~---~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~-----~mt 73 (123)
..+++|+.++|.++ ..||.+.. |||+ ++||+||++||+|++.+++++|+|+|+.+++++||+.|++ +||
T Consensus 124 ~la~~l~~~ly~~r~~~~P~~v~~lvaG~D~-~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~~~~~ms 202 (266)
T 1g0u_M 124 YIFEYLATVMYQRRSKMNPLWNAIIVAGVQS-NGDQFLRYVNLLGVTYSSPTLATGFGAHMANPLLRKVVDRESDIPKTT 202 (266)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCEEEEEEEECT-TSCEEEEEEETTCCEECCSEEECTHHHHTHHHHHTTTCSSGGGGGGCC
T ss_pred HHHHHHHHHHHHhccCCCCceEEEEEEEEcC-CCCEEEEEECCCCCEEeCCEEEEccCHHHHHHHHHHhhcccccCCCCC
Confidence 35678899998876 56877744 6795 5589999999999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCC-CeEEeec
Q psy7294 74 VQEAYSVLKQCVHHMKRRTVLSYPKFTVKVLDRT-GTVNVLQ 114 (123)
Q Consensus 74 ~eEAi~L~~k~i~~a~~Rd~~s~~~~~V~vI~kd-G~~~l~~ 114 (123)
+|||++|+++||..+.+||+.++++++|.+|+++ |++.++.
T Consensus 203 ~eeA~~la~~al~~a~~rd~~sg~~i~v~vI~k~~g~~~~~~ 244 (266)
T 1g0u_M 203 VQVAEEAIVNAMRVLYYRDARSSRNFSLAIIDKNTGLTFKKN 244 (266)
T ss_dssp HHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTTEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEECCCCeEEcCH
Confidence 9999999999999999999999999999999999 9888764
No 23
>1iru_I 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_H* 3une_H
Probab=99.89 E-value=6.1e-23 Score=156.65 Aligned_cols=108 Identities=17% Similarity=0.235 Sum_probs=94.7
Q ss_pred ccchhhHHHhhhcccccccc---cceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCCCCCCHHHHHHHH
Q psy7294 5 NSNSLTPILFMNKTLALNSK---KWTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEAYSVL 81 (123)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~---~~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~~mt~eEAi~L~ 81 (123)
.+++|+.+++..+ .||.+. .|||+ +||+||++||+|++.+++++|+|+|+.+++++||+.|+++||.|||++++
T Consensus 79 la~~l~~~l~~~~-~~~~v~llvaG~D~--~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeA~~la 155 (234)
T 1iru_I 79 ANRMLKQMLFRYR-GYIGAALVLGGVDV--TGPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKNLV 155 (234)
T ss_dssp HHHHHHHHHHHTT-TCSCEEEEEEEECS--SCEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHSCCTTCCHHHHHTHH
T ss_pred HHHHHHHHHHhcC-CCCceeEEEEEEcC--CCCEEEEECCCCCEEecCEEEECCchHHHHHHHHHhccCCCCHHHHHHHH
Confidence 3567777776543 355543 36794 68999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccccCCcEEEEEEcCCCeEEeecc
Q psy7294 82 KQCVHHMKRRTVLSYPKFTVKVLDRTGTVNVLQD 115 (123)
Q Consensus 82 ~k~i~~a~~Rd~~s~~~~~V~vI~kdG~~~l~~~ 115 (123)
++||..+.+||..++++++|.+|+++|++.++..
T Consensus 156 ~~al~~a~~~d~~sg~~i~v~vi~k~g~~~~~~~ 189 (234)
T 1iru_I 156 SEAIAAGIFNDLGSGSNIDLCVISKNKLDFLRPY 189 (234)
T ss_dssp HHHHHHHHHHCTTCCSCEEEEEEETTEEECCSEE
T ss_pred HHHHHHHHHhcccCCCCEEEEEEECCcEEEEcce
Confidence 9999999999999999999999999999877643
No 24
>1yar_A Proteasome alpha subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_A 1pma_A 3c91_A 3c92_A 3ipm_A 2ku1_A 2ku2_A 1yau_A 3jrm_A 3jse_A 3jtl_A
Probab=99.89 E-value=7.6e-23 Score=155.33 Aligned_cols=107 Identities=14% Similarity=0.085 Sum_probs=94.6
Q ss_pred cccchhhHHHhhhc----cccccccc---ceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCCCCCCHHH
Q psy7294 4 QNSNSLTPILFMNK----TLALNSKK---WTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQE 76 (123)
Q Consensus 4 ~~~~~~~~~~~~~~----~~~~~~~~---~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~~mt~eE 76 (123)
+.++++++++++++ ..||.+.. |||+ +||+||++||.|++.+++++|+|+|+.+++++||+.|+++||.||
T Consensus 111 ~~a~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~--~gp~Ly~id~~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~s~ee 188 (233)
T 1yar_A 111 NLVKRVADQMQQYTQYGGVRPYGVSLIFAGIDQ--IGPRLFDCDPAGTINEYKATAIGSGKDAVVSFLEREYKENLPEKE 188 (233)
T ss_dssp HHHHHHHHHHHHTTTBTTBCCCCEEEEEEEECS--SCEEEEEECTTCCEEEBSEEEESTTHHHHHHHHHHHCCTTCCHHH
T ss_pred HHHHHHHHHHHHhcCcCCcCcceEEEEEEEEeC--CCCEEEEECCCCCEEeeeEEEEcCCcHHHHHHHHHHhccCCCHHH
Confidence 45678888987643 34776643 6784 689999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcccccCCcEEEEEEcCCC-eEEee
Q psy7294 77 AYSVLKQCVHHMKRRTVLSYPKFTVKVLDRTG-TVNVL 113 (123)
Q Consensus 77 Ai~L~~k~i~~a~~Rd~~s~~~~~V~vI~kdG-~~~l~ 113 (123)
|++++++||..+.+||+ ++++++|.+|+++| ++.++
T Consensus 189 a~~la~~al~~~~~~d~-s~~~i~v~vi~~~~~~~~~~ 225 (233)
T 1yar_A 189 AVTLGIKALKSSLEEGE-ELKAPEIASITVGNKYRIYD 225 (233)
T ss_dssp HHHHHHHHHHHTSCSSC-CCCCCEEEEEETTSCCEECC
T ss_pred HHHHHHHHHHHHhhccC-CCCcEEEEEEECCCCEEECC
Confidence 99999999999999997 89999999999998 66654
No 25
>1iru_A 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_G* 3une_G 3unf_G* 3unh_G
Probab=99.88 E-value=1.7e-22 Score=154.63 Aligned_cols=108 Identities=17% Similarity=0.207 Sum_probs=95.3
Q ss_pred cccchhhHHH--hhhc--cccccccc---ceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCCC--CCCH
Q psy7294 4 QNSNSLTPIL--FMNK--TLALNSKK---WTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKP--DLTV 74 (123)
Q Consensus 4 ~~~~~~~~~~--~~~~--~~~~~~~~---~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~--~mt~ 74 (123)
..++++++++ |.++ ..||.+.. |||+ ++||+||++||+|++.+++++|+|+|+.+++++||+.|++ +||.
T Consensus 113 ~la~~l~~~~~~y~~~~~~rp~~v~~lvaG~D~-~~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~~ms~ 191 (246)
T 1iru_A 113 MLCKRIADISQVYTQNAEMRPLGCCMILIGIDE-EQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKFDWTF 191 (246)
T ss_dssp HHHHHHHHHHHHHHHBSSBCCCSEEEEEEEEET-TTEEEEEEECTTSCEEEBSEEEEETTHHHHHHHHHHHTTSCCCCCH
T ss_pred HHHHHHHHHHHHHhcCCCCCCcceEEEEEEEeC-CCCeEEEEEcCCeeEEEeeEEEECCCcHHHHHHHHHhhcccCCCCH
Confidence 3467888885 5544 66877744 7795 5789999999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCe--EEee
Q psy7294 75 QEAYSVLKQCVHHMKRRTVLSYPKFTVKVLDRTGT--VNVL 113 (123)
Q Consensus 75 eEAi~L~~k~i~~a~~Rd~~s~~~~~V~vI~kdG~--~~l~ 113 (123)
|||++++++||..+.+|| .++++++|.+|+++|. +.++
T Consensus 192 eea~~la~~al~~~~~rd-~sg~~i~v~vi~~~g~~~~~l~ 231 (246)
T 1iru_A 192 EQTVETAITCLSTVLSID-FKPSEIEVGVVTVENPKFRILT 231 (246)
T ss_dssp HHHHHHHHHHHHHHTTCC-CCTTSEEEEEEETTEEEEEECC
T ss_pred HHHHHHHHHHHHHHhccc-CCCCcEEEEEEECCCCeEEECC
Confidence 999999999999999999 9999999999999995 5543
No 26
>1iru_C 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_B* 3une_B 3unf_B* 3unh_B
Probab=99.88 E-value=1.3e-22 Score=156.94 Aligned_cols=109 Identities=21% Similarity=0.228 Sum_probs=96.6
Q ss_pred cccchhhHHHhhhc----cccccccc---ceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCCC-CCCHH
Q psy7294 4 QNSNSLTPILFMNK----TLALNSKK---WTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKP-DLTVQ 75 (123)
Q Consensus 4 ~~~~~~~~~~~~~~----~~~~~~~~---~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~-~mt~e 75 (123)
..+++|+++++.++ ..||.+.. |||+ .+||+||++||+|++.+++++|+|+|+.+++++||+.|++ +||.|
T Consensus 109 ~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~-~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~ms~e 187 (261)
T 1iru_C 109 QLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDK-HYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYKEGEMTLK 187 (261)
T ss_dssp HHHHHHHHHHHHTTTBSSCCCCCEEEEEEEEET-TTEEEEEEEETTTEEEECSEEEESTTTTHHHHHHHHHCCTTCCCHH
T ss_pred HHHHHHHHHHHHhccccCcCcceEEEEEEEEeC-CCCcEEEEECCCceEEeeeeEEeCcccHHHHHHHHHhhccCCCCHH
Confidence 34678888987654 45777643 6795 5789999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHHHHHhcccccCCcEEEEEEcCCC----eEEee
Q psy7294 76 EAYSVLKQCVHHMKRRTVLSYPKFTVKVLDRTG----TVNVL 113 (123)
Q Consensus 76 EAi~L~~k~i~~a~~Rd~~s~~~~~V~vI~kdG----~~~l~ 113 (123)
||++++++||..+.+||..++++++|++|+++| ++.++
T Consensus 188 eA~~la~~al~~~~~~d~~sg~~i~v~vi~~~~~~~~~~~l~ 229 (261)
T 1iru_C 188 SALALAIKVLNKTMDVSKLSAEKVEIATLTRENGKTVIRVLK 229 (261)
T ss_dssp HHHHHHHHHHHHSSSCTTCCSTTCEEEEEECCSSSCEEEECC
T ss_pred HHHHHHHHHHHHHHhccCCCCCcEEEEEEEcCCCeeeEEECC
Confidence 999999999999999999999999999999997 45553
No 27
>3mi0_A Proteasome subunit alpha; enzyme inhibitors, lactones, proteasome endopeptidase comple mycobacterium tuberculosis, hydrolase; HET: SA6; 2.20A {Mycobacterium tuberculosis} SCOP: d.153.1.4 PDB: 3h6f_A 3krd_A* 3h6i_A* 3mka_A 2fhh_A* 2fhg_A 3hfa_D 3hf9_A 3mfe_D
Probab=99.88 E-value=3.6e-22 Score=154.26 Aligned_cols=107 Identities=16% Similarity=0.173 Sum_probs=87.5
Q ss_pred cchhhHHH---hhhccccccccc---ceeC--CCCceEEEEECCCCceee-eCeEEEcccHHHHHHHHHccCCCCCCHHH
Q psy7294 6 SNSLTPIL---FMNKTLALNSKK---WTDC--NTFGVTLYKGDPYGFMLE-VPYAYIGINGFLTASLVDKYYKPDLTVQE 76 (123)
Q Consensus 6 ~~~~~~~~---~~~~~~~~~~~~---~~D~--~~~gP~Ly~iD~~Gs~~~-~~~~a~G~Gs~~~~~~Ld~~y~~~mt~eE 76 (123)
+++|++.+ |..+..||-+.. |||+ ..+||+||++||+|++.+ ++++|+|+|+.+++++||+.|+++||.||
T Consensus 100 a~~l~~~l~q~yt~~~rP~gv~~liaG~D~~~~~~gp~Ly~~Dp~G~~~~e~~~~a~Gsgs~~a~~~Le~~y~~~mt~ee 179 (248)
T 3mi0_A 100 ANVYAQTLGTIFTEQAKPYEVELCVAEVAHYGETKRPELYRITYDGSIADEPHFVVMGGTTEPIANALKESYAENASLTD 179 (248)
T ss_dssp HHHHHHHHHHHHHHSSSCCCEEEEEEECCCTTCCCCCEEEEECTTSCEEEESSEEEESSCHHHHHHHHHHHCCTTCCHHH
T ss_pred HHHHHHHHHHHhccCCCCceEEEEEEEEcCCCCCCCCEEEEECCCeEEeecccEEEECccHHHHHHHHHhhcCCCCCHHH
Confidence 45566443 444677877743 6795 247899999999999995 99999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH-------hcccccCCcEEEEEEcCCC----eEEee
Q psy7294 77 AYSVLKQCVHHMK-------RRTVLSYPKFTVKVLDRTG----TVNVL 113 (123)
Q Consensus 77 Ai~L~~k~i~~a~-------~Rd~~s~~~~~V~vI~kdG----~~~l~ 113 (123)
|++|+++||.++. +|+ +++++++|+||+++| .+.++
T Consensus 180 ai~la~~aL~~~~~~~~~~~~~~-~~~~~iev~vv~~~g~~~~f~~l~ 226 (248)
T 3mi0_A 180 ALRIAVAALRAGSADTSGGDQPT-LGVASLEVAVLDANRPRRAFRRIT 226 (248)
T ss_dssp HHHHHHHHHHHC-------------CCTTEEEEEEETTSSSCCEEECC
T ss_pred HHHHHHHHHHHHHhhcccCcccc-cCCCcEEEEEEECCCCcccEEECC
Confidence 9999999999999 664 889999999999998 56654
No 28
>1ryp_C 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_B* 1g65_B 2f16_B* 2fak_B* 2fny_B* 2gpl_B* 3d29_B* 3dy3_B* 3dy4_B* 3e47_B* 3gpj_B* 3gpt_B* 3gpw_B* 3hye_B* 3mg0_B* 3mg4_B* 3okj_B* 3shj_B* 3tdd_B* 3nzj_B* ...
Probab=99.88 E-value=2.9e-22 Score=153.02 Aligned_cols=105 Identities=17% Similarity=0.211 Sum_probs=92.7
Q ss_pred cccchhhHHHhhh----ccccccccc---ceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCCCCCCHHH
Q psy7294 4 QNSNSLTPILFMN----KTLALNSKK---WTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQE 76 (123)
Q Consensus 4 ~~~~~~~~~~~~~----~~~~~~~~~---~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~~mt~eE 76 (123)
..++++++++++. +..||.+.. |+|+ ++||+||++||.|++.+++++|+|+|+.+++++||+.|+++||.||
T Consensus 109 ~la~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~-~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~ee 187 (244)
T 1ryp_C 109 ILVRRLSDIKQGYTQHGGLRPFGVSFIYAGYDD-RYGYQLYTSNPSGNYTGWKAISVGANTSAAQTLLQMDYKDDMKVDD 187 (244)
T ss_dssp HHHHHHHHHHHHHHHBSSCCCCCEEEEEEEEET-TTEEEEEEECTTCCEEEBSEEEESTTHHHHHHHHHHHCCTTCCHHH
T ss_pred HHHHHHHHHHHHHhccCCccceEEEEEEEEEcC-CCCCEEEEECCCccEEeeeEEEECCCcHHHHHHHHHhhhcCCCHHH
Confidence 3467888888442 445777743 6795 4789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcccccCCcEEEEEEc--CCCe
Q psy7294 77 AYSVLKQCVHHMKRRTVLSYPKFTVKVLD--RTGT 109 (123)
Q Consensus 77 Ai~L~~k~i~~a~~Rd~~s~~~~~V~vI~--kdG~ 109 (123)
|++++++||..+.+||..++++++|.+|+ ++|.
T Consensus 188 a~~la~~al~~~~~rd~~sg~~i~v~vi~~~~~~~ 222 (244)
T 1ryp_C 188 AIELALKTLSKTTDSSALTYDRLEFATIRKGANDG 222 (244)
T ss_dssp HHHHHHHHHHHHCSSSSCCGGGEEEEEEECCSSSS
T ss_pred HHHHHHHHHHHHhccccCCCCcEEEEEEEeecCCC
Confidence 99999999999999976789999999999 9873
No 29
>1q5q_A Proteasome alpha-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_A 1q5r_A
Probab=99.87 E-value=1.5e-22 Score=156.82 Aligned_cols=110 Identities=18% Similarity=0.246 Sum_probs=94.1
Q ss_pred ccccchhhHHH---hhhccccccccc---cee--CCCCceEEEEECCCCcee-eeCeEEEcccHHHHHHHHHccCCCCCC
Q psy7294 3 RQNSNSLTPIL---FMNKTLALNSKK---WTD--CNTFGVTLYKGDPYGFML-EVPYAYIGINGFLTASLVDKYYKPDLT 73 (123)
Q Consensus 3 ~~~~~~~~~~~---~~~~~~~~~~~~---~~D--~~~~gP~Ly~iD~~Gs~~-~~~~~a~G~Gs~~~~~~Ld~~y~~~mt 73 (123)
++.+++|++++ |..+..||.+.. ||| +...||+||++||+|++. +++++|+|+|+.+++++||+.|+++||
T Consensus 97 ~~la~~l~~~l~q~yt~~~rP~~v~~lvaG~D~~~~~~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~~ms 176 (259)
T 1q5q_A 97 RSLANAYAQTLGTIFTEQPKPYEVEICVAEVGRVGSPKAPQLYRITYDGSIVDEQHFVVMGGTTEPIATAMRESYRADLD 176 (259)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCCCEEEEEEECCCSSCCCCCEEEEEETTSCEEEESSEEEESSSHHHHHHHHHHHCCTTCC
T ss_pred HHHHHHHHHHHHHHhccCCCCceEEEEEEEEcccCCCCCCEEEEECCCCceeeCCCEEEECCChHHHHHHHHhhccCCCC
Confidence 34578899964 767788887744 678 325689999999999999 889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH-----hcccccCCcEEEEEEcCC----CeEEee
Q psy7294 74 VQEAYSVLKQCVHHMK-----RRTVLSYPKFTVKVLDRT----GTVNVL 113 (123)
Q Consensus 74 ~eEAi~L~~k~i~~a~-----~Rd~~s~~~~~V~vI~kd----G~~~l~ 113 (123)
.|||++++++||..+. +||. ++++++|++|+++ |++.++
T Consensus 177 ~eea~~la~~al~~~~~~~~~~rd~-sg~~iev~vi~~~~~~~~~~~l~ 224 (259)
T 1q5q_A 177 LEAAVGIAVNALRQGGAGEGEKRNV-DVASLEVAVLDQSRPRRAFRRIA 224 (259)
T ss_dssp HHHHHHHHHHHHTTCC--------C-CSSCSEEEEEETTSSSCCEEECC
T ss_pred HHHHHHHHHHHHHHHhhcccccccC-CCCcEEEEEEECCCCcCCeEECC
Confidence 9999999999999999 9998 9999999999999 577665
No 30
>1ryp_E 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_D* 1g65_D 2f16_D* 2fak_D* 2fny_D* 2gpl_D* 3d29_D* 3dy3_D* 3dy4_D* 3e47_D* 3gpj_D* 3gpt_D* 3gpw_D* 3hye_D* 3mg0_D* 3mg4_D* 3okj_D* 3shj_D* 3tdd_D* 2z5c_C ...
Probab=99.87 E-value=3.8e-22 Score=152.22 Aligned_cols=107 Identities=12% Similarity=0.101 Sum_probs=92.4
Q ss_pred ccchhhHHHhhhc----------cccccccc---ceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCCCC
Q psy7294 5 NSNSLTPILFMNK----------TLALNSKK---WTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPD 71 (123)
Q Consensus 5 ~~~~~~~~~~~~~----------~~~~~~~~---~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~~ 71 (123)
.+++++++++.++ .+||.+.. |||+ ++||+||++||.|++.+++++|+|+|+.+++++||+.|+++
T Consensus 104 la~~l~~~~~~~t~~~~~~~~l~~RP~~v~~lvaG~D~-~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ 182 (242)
T 1ryp_E 104 LTQSVCDLALRFGEGASGEERLMSRPFGVALLIAGHDA-DDGYQLFHAEPSGTFYRYNAKAIGSGSEGAQAELLNEWHSS 182 (242)
T ss_dssp HHHHHHTTTTCCBSSCTTSCCCBSSCCSEEEEEEEEET-TTEEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHCCTT
T ss_pred HHHHHHHHHHHhccccCcccccccCcceEEEEEEEEeC-CCCCEEEEECCCCCEeccCEEEECCCCHHHHHHHHHhhccC
Confidence 4566777775532 34766643 6796 57899999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCe-EEee
Q psy7294 72 LTVQEAYSVLKQCVHHMKRRTVLSYPKFTVKVLDRTGT-VNVL 113 (123)
Q Consensus 72 mt~eEAi~L~~k~i~~a~~Rd~~s~~~~~V~vI~kdG~-~~l~ 113 (123)
||.|||++++++||..+.+| ..++++++|.+|+++|. +.++
T Consensus 183 ms~eea~~la~~al~~~~~~-~~sg~~i~v~vi~~~~~~~~~~ 224 (242)
T 1ryp_E 183 LTLKEAELLVLKILKQVMEE-KLDENNAQLSCITKQDGFKIYD 224 (242)
T ss_dssp CCHHHHHHHHHHHHHHHCSS-CCCTTSEEEEEEETTTEEEECC
T ss_pred CCHHHHHHHHHHHHHHHhhc-cCCCCcEEEEEEECCCCeEECC
Confidence 99999999999999999999 78999999999999985 5543
No 31
>1ryp_B 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_B 1g0u_A* 1jd2_A* 1g65_A 1z7q_B 2f16_A* 2fak_A* 2fny_A* 2gpl_A* 2zcy_A* 3bdm_A* 3d29_A* 3dy3_A* 3dy4_A* 3e47_A* 3gpj_A* 3gpt_A* 3gpw_A* 3hye_A* 3mg0_A* ...
Probab=99.87 E-value=7.8e-22 Score=151.42 Aligned_cols=101 Identities=12% Similarity=0.172 Sum_probs=87.9
Q ss_pred cchhhHHHhhhccccccccc---ceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCCCCCCHHHHHHHHH
Q psy7294 6 SNSLTPILFMNKTLALNSKK---WTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEAYSVLK 82 (123)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~---~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~~mt~eEAi~L~~ 82 (123)
+++++..++.++..||.+.. |||+ .+||+||++||.|++.+++++|+|+|+.+++++||+.|+++||.|||+++++
T Consensus 115 a~~~~~~~~~~~~rp~~v~~lvaG~D~-~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~ 193 (250)
T 1ryp_B 115 AKIMQEATQSGGVRPFGVSLLIAGHDE-FNGFSLYQVDPSGSYFPWKATAIGKGSVAAKTFLEKRWNDELELEDAIHIAL 193 (250)
T ss_dssp HHHHHHTTTSBTBCCCCEEEEEEEEET-TTEEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHH
T ss_pred HHHHHHHHhcCCcccceEEEEEEEEcC-CCCcEEEEECCCCCEEeeceeEecCccHHHHHHHHHHhccCCCHHHHHHHHH
Confidence 34444444555667877744 6795 5689999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcccccCCcEEEEEEcCCC
Q psy7294 83 QCVHHMKRRTVLSYPKFTVKVLDRTG 108 (123)
Q Consensus 83 k~i~~a~~Rd~~s~~~~~V~vI~kdG 108 (123)
+||..+.+|+ .++++++|.+|+++|
T Consensus 194 ~al~~~~~~~-~sg~~i~v~vi~~~~ 218 (250)
T 1ryp_B 194 LTLKESVEGE-FNGDTIELAIIGDEN 218 (250)
T ss_dssp HHHHHHCCSC-CSTTTEEEEEECSCC
T ss_pred HHHHHHhccc-cCCCCEEEEEEEccc
Confidence 9999999985 689999999999974
No 32
>1q5q_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4
Probab=99.86 E-value=1e-21 Score=149.73 Aligned_cols=110 Identities=18% Similarity=0.155 Sum_probs=93.9
Q ss_pred cccchhhHHHhhhc---ccccccc---cceeCCCCc-----eEEEEECCCCceeee--CeEEEcccHHHHHHHHHccCCC
Q psy7294 4 QNSNSLTPILFMNK---TLALNSK---KWTDCNTFG-----VTLYKGDPYGFMLEV--PYAYIGINGFLTASLVDKYYKP 70 (123)
Q Consensus 4 ~~~~~~~~~~~~~~---~~~~~~~---~~~D~~~~g-----P~Ly~iD~~Gs~~~~--~~~a~G~Gs~~~~~~Ld~~y~~ 70 (123)
..+++|++++++++ ..||.+. .|||+ ++| |+||++||+|++.++ +++|+|+|+.+++++||+.|++
T Consensus 78 ~la~~l~~~~~~~~~~~~rp~~v~~lvaG~D~-~~g~~~~~p~Ly~idp~G~~~~~~~~~~aiGsgs~~a~~~Le~~~~~ 156 (235)
T 1q5q_H 78 GKANRLASMVRGNLGAAMQGLAVVPLLVGYDL-DADDESRAGRIVSYDVVGGRYEERAGYHAVGSGSLFAKSALKKIYSP 156 (235)
T ss_dssp HHHHHHHHHHHTTHHHHTTTCCEEEEEEEECT-TCSSTTSCEEEEEECTTSCEEECCSSEEEESTTHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHHHHHHhhhcccceEEEEEEEEC-CCCccCCCCEEEEECCCCceEEeCCCeEEECCCHHHHHHHHHhhcCC
Confidence 45678888887754 3355552 36796 446 999999999999999 9999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhcccccCC-c-E-----EEEEEcCCCeEEeec
Q psy7294 71 DLTVQEAYSVLKQCVHHMKRRTVLSYP-K-F-----TVKVLDRTGTVNVLQ 114 (123)
Q Consensus 71 ~mt~eEAi~L~~k~i~~a~~Rd~~s~~-~-~-----~V~vI~kdG~~~l~~ 114 (123)
+||.|||++++++||..+.+||+.+++ . + +|++|+++|++.++.
T Consensus 157 ~ms~eeA~~la~~al~~a~~~d~~sg~~~~i~~~~~ev~vi~~~g~~~l~~ 207 (235)
T 1q5q_H 157 DSDEETALRAAIESLYDAADDDSATGGPDLTRGIYPTAVTITQAGAVHVSE 207 (235)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHCTTTCCCBTTTTBCCEEEEEETTEEEECCH
T ss_pred CCCHHHHHHHHHHHHHHHHhhCcccCCcccccccccEEEEEeCCCeEEeCH
Confidence 999999999999999999999988775 2 2 999999999888653
No 33
>1ryp_G 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_F* 1g65_F 1vsy_G 2f16_F* 2fak_F* 2fny_F* 2gpl_F* 3d29_F* 3dy3_F* 3dy4_F* 3e47_F* 3gpj_F* 3gpt_F* 3gpw_F* 3hye_F* 3l5q_L 3mg0_F* 3mg4_F* 3okj_F* 3shj_F* ...
Probab=99.86 E-value=1.9e-21 Score=149.07 Aligned_cols=108 Identities=14% Similarity=0.081 Sum_probs=94.7
Q ss_pred cccchhhHHHhh----hccccccccc---ceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHcc---CCCCCC
Q psy7294 4 QNSNSLTPILFM----NKTLALNSKK---WTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKY---YKPDLT 73 (123)
Q Consensus 4 ~~~~~~~~~~~~----~~~~~~~~~~---~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~---y~~~mt 73 (123)
..+++|++++.. ++..||.+.. ||| ++||+||++||+|++.+++++|+|+|+.+++++||+. |+++||
T Consensus 107 ~la~~l~~~~~~~t~~~~~rp~~v~~lvaG~D--~~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~~~ms 184 (244)
T 1ryp_G 107 AFADRLGQYVQAHTLYNSVRPFGVSTIFGGVD--KNGAHLYMLEPSGSYWGYKGAATGKGRQSAKAELEKLVDHHPEGLS 184 (244)
T ss_dssp HHHHHHHHHHHHTTSCTTBCCCCEEEEEEEEE--TTEEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHHHHCTTCCC
T ss_pred HHHHHHHHHHHHHhcccCccCceEEEEEEEEe--CCcCEEEEECCCCCEEEeeEEEECCChHHHHHHHHHhHhhcCCCCC
Confidence 346778888833 2346777643 679 4689999999999999999999999999999999997 999999
Q ss_pred HHHHHHHHHHHHHHHHhcccccCCcEEEEEEcC---CCeEEee
Q psy7294 74 VQEAYSVLKQCVHHMKRRTVLSYPKFTVKVLDR---TGTVNVL 113 (123)
Q Consensus 74 ~eEAi~L~~k~i~~a~~Rd~~s~~~~~V~vI~k---dG~~~l~ 113 (123)
.|||++++++||..+.+||..++.+++|++|++ +|++.+.
T Consensus 185 ~eea~~la~~al~~~~~~d~~s~~~iev~vi~~~~~~g~~~~~ 227 (244)
T 1ryp_G 185 AREAVKQAAKIIYLAHEDNKEKDFELEISWCSLSETNGLHKFV 227 (244)
T ss_dssp HHHHHHHHHHHHHHHGGGGTTSCEEEEEEEEETTTTTTSEEEC
T ss_pred HHHHHHHHHHHHHHHHhccCCCCCeEEEEEEEecCCCCeeeeC
Confidence 999999999999999999999999999999998 7887754
No 34
>1iru_E 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_D* 3une_D 3unf_D* 3unh_D
Probab=99.86 E-value=8.1e-22 Score=150.46 Aligned_cols=107 Identities=14% Similarity=0.172 Sum_probs=92.8
Q ss_pred cccchhhHHH--hhhc-------cccccccc---ceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCCCC
Q psy7294 4 QNSNSLTPIL--FMNK-------TLALNSKK---WTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPD 71 (123)
Q Consensus 4 ~~~~~~~~~~--~~~~-------~~~~~~~~---~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~~ 71 (123)
..+++|++++ |.++ ..||.+.. |+| ++||+||++||.|++.+++++|+|+|+.+++++||+.|+++
T Consensus 111 ~~a~~l~~~~~~y~~~~~~~~l~~rp~~v~~lvaG~D--~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ 188 (241)
T 1iru_E 111 SVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVD--EKGPQLFHMDPSGTFVQCDARAIGSASEGAQSSLQELYHKS 188 (241)
T ss_dssp HHHHHHHTTTTCBCSTTCCSSCBSSCCCEEEEEEEEE--TTEEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHCCTT
T ss_pred HHHHHHHHHHHHHhccccccccccccceEEEEEEEEe--CCCCEEEEECCCCcEEecceEEECCCcHHHHHHHHHHhccC
Confidence 4567777887 4332 34776643 679 57899999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCe-EEee
Q psy7294 72 LTVQEAYSVLKQCVHHMKRRTVLSYPKFTVKVLDRTGT-VNVL 113 (123)
Q Consensus 72 mt~eEAi~L~~k~i~~a~~Rd~~s~~~~~V~vI~kdG~-~~l~ 113 (123)
||.|||++++++||..+.+| ..++++++|.+|+++|. +.++
T Consensus 189 ms~eea~~la~~al~~~~~~-~~sg~~i~v~vi~~~~~~~~l~ 230 (241)
T 1iru_E 189 MTLKEAIKSSLIILKQVMEE-KLNATNIELATVQPGQNFHMFT 230 (241)
T ss_dssp CCHHHHHHHHHHHHHHHCSS-CCCTTSEEEEEECSSSCCEECC
T ss_pred CCHHHHHHHHHHHHHHHhhc-cCCCCCEEEEEEECCCCeEECC
Confidence 99999999999999999999 78999999999999984 5443
No 35
>1iru_G 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_F* 3une_F 3unf_F* 3unh_F
Probab=99.86 E-value=7.8e-22 Score=151.99 Aligned_cols=109 Identities=11% Similarity=0.058 Sum_probs=96.4
Q ss_pred cccchhhHHHhhhc----cccccccc---ceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCCCCCCHHH
Q psy7294 4 QNSNSLTPILFMNK----TLALNSKK---WTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQE 76 (123)
Q Consensus 4 ~~~~~~~~~~~~~~----~~~~~~~~---~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~~mt~eE 76 (123)
..+++|+++++.++ ..||.+.. |||+ .+||+||++||+|++.+++++|+|+|+.+++++||+.|+++||.||
T Consensus 110 ~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~-~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~ee 188 (254)
T 1iru_G 110 HLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSV-NDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEKLQMKEMTCRD 188 (254)
T ss_dssp HHHHHHHHHHHHTTSBSSBCCCSEEEEEEEEET-TTEEEEEEECTTCCEEEBSEEEESTTHHHHHHHHTTSCGGGCCHHH
T ss_pred HHHHHHHHHHHHhccccccccceEEEEEEEEeC-CCCcEEEEEcCCCCEEeeeeEEecCccHHHHHHHHHhccCCCCHHH
Confidence 45788999996654 56777643 6796 5789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcccccCCcEEEEEEcCC--C-eEEee
Q psy7294 77 AYSVLKQCVHHMKRRTVLSYPKFTVKVLDRT--G-TVNVL 113 (123)
Q Consensus 77 Ai~L~~k~i~~a~~Rd~~s~~~~~V~vI~kd--G-~~~l~ 113 (123)
|++++++||..+..++..++.+++|++|+++ | ++.++
T Consensus 189 a~~la~~al~~~~~~~~~~~~~iev~vi~~~~~g~~~~l~ 228 (254)
T 1iru_G 189 IVKEVAKIIYIVHDEVKDKAFELELSWVGELTNGRHEIVP 228 (254)
T ss_dssp HHHHHHHHHHHHSCSSSSCCEEEEEEECBTTTTTCCEECC
T ss_pred HHHHHHHHHHHHHhhccCCCCcEEEEEEEcCCCCCeEECC
Confidence 9999999999999988778999999999987 6 77665
No 36
>1ryp_D 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_C* 1g65_C 2f16_C* 2fak_C* 2fny_C* 2gpl_C* 3d29_C* 3dy3_C* 3dy4_C* 3e47_C* 3gpj_C* 3gpt_C* 3gpw_C* 3hye_C* 3mg0_C* 3mg4_C* 3oeu_C* 3oev_C* 3okj_C* 3shj_C* ...
Probab=99.86 E-value=4.2e-21 Score=146.46 Aligned_cols=107 Identities=15% Similarity=0.163 Sum_probs=92.8
Q ss_pred cccchhhHHHhhhc----cccccccc---ceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccC---CCCCC
Q psy7294 4 QNSNSLTPILFMNK----TLALNSKK---WTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYY---KPDLT 73 (123)
Q Consensus 4 ~~~~~~~~~~~~~~----~~~~~~~~---~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y---~~~mt 73 (123)
..+++|+++++.+. .+||.+.. |||+..+||+||++||.|++.+++++|+|+|+.+++++||+.| +++||
T Consensus 106 ~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~~~ms 185 (241)
T 1ryp_D 106 YLTRYVAGVQQRYTQSGGVRPFGVSTLIAGFDPRDDEPKLYQTEPSGIYSSWSAQTIGRNSKTVREFLEKNYDRKEPPAT 185 (241)
T ss_dssp HHHHHHHHHHHHTTSSTTBCCCSEEEEEEECCTTCCSCEEEEECTTSCEEEBSEEEESTTHHHHHHHHHTTCCTTSCCCS
T ss_pred HHHHHHHHHHHHHccCCCCCCcceeeEEEEEcCCCCCeeEEEECCCCCEEEeeeEEECCCcHHHHHHHHHhhhcccCCCC
Confidence 35678888887632 35777643 6795327899999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCC-eEEee
Q psy7294 74 VQEAYSVLKQCVHHMKRRTVLSYPKFTVKVLDRTG-TVNVL 113 (123)
Q Consensus 74 ~eEAi~L~~k~i~~a~~Rd~~s~~~~~V~vI~kdG-~~~l~ 113 (123)
.|||++++++||..+.+ .++++++|.+|+++| ++.++
T Consensus 186 ~eea~~l~~~al~~~~~---~sg~~i~v~vi~~~~~~~~l~ 223 (241)
T 1ryp_D 186 VEECVKLTVRSLLEVVQ---TGAKNIEITVVKPDSDIVALS 223 (241)
T ss_dssp HHHHHHHHHHHHHHHHC---SCSTTEEEEEEETTTEEEECC
T ss_pred HHHHHHHHHHHHHHHhc---CCCCcEEEEEEECCCcEEECC
Confidence 99999999999999986 789999999999996 66654
No 37
>1iru_F 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_E* 3une_E 3unf_E* 3unh_E
Probab=99.86 E-value=1.1e-21 Score=151.99 Aligned_cols=109 Identities=6% Similarity=0.024 Sum_probs=95.6
Q ss_pred cccchhhHHHhhh----ccccccccc---ceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCCC--CCCH
Q psy7294 4 QNSNSLTPILFMN----KTLALNSKK---WTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKP--DLTV 74 (123)
Q Consensus 4 ~~~~~~~~~~~~~----~~~~~~~~~---~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~--~mt~ 74 (123)
..+++|+++++.+ ...||.+.. |||+ +||+||++||+|++.+++++|+|+|+.+++++||+.|++ +||.
T Consensus 107 ~la~~l~~~l~~~t~~~~~RP~~v~~lvaG~D~--~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~~ms~ 184 (263)
T 1iru_F 107 RLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDD--MGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMECNL 184 (263)
T ss_dssp HHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEET--TEEEEEEECSSSCEEEESEEEESTTHHHHHHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHHHHHhhcccccccceEEEEEEEEcC--CCCEEEEECCCCCEEEeeEEEcCcccHHHHHHHHHHhcccCCCCH
Confidence 4577888988642 345776643 6794 689999999999999999999999999999999999998 9999
Q ss_pred HHHHHHHHHHHHHHHhcc-cccCCcEEEEEEcCC-CeEEeec
Q psy7294 75 QEAYSVLKQCVHHMKRRT-VLSYPKFTVKVLDRT-GTVNVLQ 114 (123)
Q Consensus 75 eEAi~L~~k~i~~a~~Rd-~~s~~~~~V~vI~kd-G~~~l~~ 114 (123)
|||++++++||.++.+|| ..++++++|++|+++ |++.++.
T Consensus 185 eea~~la~~al~~~~~rd~~~sg~~iev~vi~~~~~~~~l~~ 226 (263)
T 1iru_F 185 NELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIYDD 226 (263)
T ss_dssp HHHHHHHHHHHHTTSCTTCCCCTTTEEEEEEETTEEEEEECS
T ss_pred HHHHHHHHHHHHHHHhccccCCCCcEEEEEEECCCCeEECCH
Confidence 999999999999999999 589999999999999 6777653
No 38
>3unf_N Proteasome subunit beta type-9; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_N
Probab=99.85 E-value=2.7e-21 Score=143.17 Aligned_cols=105 Identities=19% Similarity=0.158 Sum_probs=90.4
Q ss_pred ccccchhhHHHhhhccccccccc---ceeCCCCceEEEEECCCCceeeeC-eEEEcccHHHHHHHHHccCCCCCCHHHHH
Q psy7294 3 RQNSNSLTPILFMNKTLALNSKK---WTDCNTFGVTLYKGDPYGFMLEVP-YAYIGINGFLTASLVDKYYKPDLTVQEAY 78 (123)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~---~~D~~~~gP~Ly~iD~~Gs~~~~~-~~a~G~Gs~~~~~~Ld~~y~~~mt~eEAi 78 (123)
+..+++|+++++..+. ||.+.. |+|+ ++||+||+ |+|++..++ ++++|+|+.+++++||+.|+++||.|||+
T Consensus 77 ~~~a~~l~~~l~~~~~-p~~v~~lvaG~D~-~~~p~ly~--p~G~~~~~~~~~~~Gsgs~~a~~~Le~~~~~~ms~eea~ 152 (199)
T 3unf_N 77 LAAANVVKNISYKYRE-DLLAHLIVAGWDQ-REGGQVYG--TMGGMLIRQPFTIGGSGSSYIYGYVDAAYKPGMTPEECR 152 (199)
T ss_dssp HHHHHHHHHHHHHTTT-TCCCCEEEEEEET-TTEEEEEE--CGGGCCEECSEEEEEGGGGGGHHHHHHHCCSSCCHHHHH
T ss_pred HHHHHHHHHHHHhcCC-CceEEEEEEEEeC-CCCcEEEE--ECCCceecCCEEEEccCHHHHHHHHHhhcCCCCCHHHHH
Confidence 3457889999887553 777643 7896 57899999 999876555 55679999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccccCCcEEEEEEcCCCeEE
Q psy7294 79 SVLKQCVHHMKRRTVLSYPKFTVKVLDRTGTVN 111 (123)
Q Consensus 79 ~L~~k~i~~a~~Rd~~s~~~~~V~vI~kdG~~~ 111 (123)
+++++||..+.+||+.++++++|++|+++|++.
T Consensus 153 ~la~~al~~~~~~d~~sg~~i~v~vi~~~g~~~ 185 (199)
T 3unf_N 153 RFTTNAITLAMNRDGSSGGVIYLVTITAAGVDH 185 (199)
T ss_dssp HHHHHHHHHHHHHCTTCCSCEEEEEECSSCEEE
T ss_pred HHHHHHHHHHHHhccccCCCeEEEEEcCCCEEE
Confidence 999999999999999999999999999999543
No 39
>1q5r_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, hydrolase; 3.10A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_H
Probab=99.85 E-value=4.7e-21 Score=151.32 Aligned_cols=110 Identities=18% Similarity=0.150 Sum_probs=95.0
Q ss_pred cccchhhHHHhhhcc---cccccc---cceeCCCCc-----eEEEEECCCCceeee--CeEEEcccHHHHHHHHHccCCC
Q psy7294 4 QNSNSLTPILFMNKT---LALNSK---KWTDCNTFG-----VTLYKGDPYGFMLEV--PYAYIGINGFLTASLVDKYYKP 70 (123)
Q Consensus 4 ~~~~~~~~~~~~~~~---~~~~~~---~~~D~~~~g-----P~Ly~iD~~Gs~~~~--~~~a~G~Gs~~~~~~Ld~~y~~ 70 (123)
..+++|++++++++. .||.+. .|||+ ++| |+||++||+|++.++ +++|+|+|+.+++++||+.|++
T Consensus 143 ~la~~la~~l~~~~~~~~rp~~v~lLvaG~D~-~~g~~~~~p~Ly~iDp~G~~~e~~~~~~AiGsgs~~a~~~Le~~y~~ 221 (294)
T 1q5r_H 143 GKANRLASMVRGNLGAAMQGLAVVPLLVGYDL-DADDESRAGRIVSYDVVGGRYEERAGYHAVGSGSLFAKSALKKIYSP 221 (294)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTCEEEEEEEECT-TCSCTTSCEEEEEECSSSCEEECCSSEEEESTTHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHHHhhhcCCcceEEEEEEEeC-CCCcCCCCCEEEEECCCCeEEecCCCeEEEecCcHHHHHHHHHhccC
Confidence 456788889887554 566653 36796 445 999999999999999 9999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhcccccCCc--E-----EEEEEcCCCeEEeec
Q psy7294 71 DLTVQEAYSVLKQCVHHMKRRTVLSYPK--F-----TVKVLDRTGTVNVLQ 114 (123)
Q Consensus 71 ~mt~eEAi~L~~k~i~~a~~Rd~~s~~~--~-----~V~vI~kdG~~~l~~ 114 (123)
+||.|||++++++||..+.+||+.+++. + +|.+|+++|++.++.
T Consensus 222 ~ms~eEAi~la~~aL~~a~~rD~~sG~~~~ir~i~~ev~vI~~~g~~~l~~ 272 (294)
T 1q5r_H 222 DSDEETALRAAIESLYDAADDDSATGGPDLTRGIYPTAVTITQAGAVHVSE 272 (294)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHCTTTCCCBTTTTBCCEEEEEETTEEEECCH
T ss_pred CCCHHHHHHHHHHHHHHHHhhccccCCchhhcccCCEEEEEECCCEEEcCH
Confidence 9999999999999999999999887643 6 999999999888653
No 40
>1ryp_F 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_E* 1g65_E 2f16_E* 2fak_E* 2fny_E* 2gpl_E* 3d29_E* 3dy3_E* 3dy4_E* 3e47_E* 3gpj_E* 3gpt_E* 3gpw_E* 3hye_E* 3mg0_E* 3mg4_E* 3oeu_E* 3oev_E* 3okj_E* 3shj_E* ...
Probab=99.85 E-value=2.3e-21 Score=147.31 Aligned_cols=108 Identities=11% Similarity=0.051 Sum_probs=94.1
Q ss_pred cccchhhHHHhh----hccccccccc---ceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCCC--CC--
Q psy7294 4 QNSNSLTPILFM----NKTLALNSKK---WTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKP--DL-- 72 (123)
Q Consensus 4 ~~~~~~~~~~~~----~~~~~~~~~~---~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~--~m-- 72 (123)
..+++|++++.. ...+||.+.. |||+ .||+||++||+|++.+++++|+|+|+.+++++||+.|++ +|
T Consensus 106 ~la~~l~~~~~~~t~~~~~rp~~v~~lvaG~D~--~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~~m~~ 183 (233)
T 1ryp_F 106 RAGHLLCDKAQKNTQSYGGRPYGVGLLIIGYDK--SGAHLLEFQPSGNVTELYGTAIGARSQGAKTYLERTLDTFIKIDG 183 (233)
T ss_dssp HHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEET--TEEEEEEECTTSCEEEESEEEESTTHHHHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHHhcccCCcCcceEEEEEEEeC--CcCEEEEECCCCCeeeeeEEEECCCcHHHHHHHHHHhccccccCC
Confidence 456788888843 2345777643 6794 689999999999999999999999999999999999999 99
Q ss_pred CHHHHHHHHHHHHHHHHhcc-cccCCcEEEEEEcCC-CeEEeec
Q psy7294 73 TVQEAYSVLKQCVHHMKRRT-VLSYPKFTVKVLDRT-GTVNVLQ 114 (123)
Q Consensus 73 t~eEAi~L~~k~i~~a~~Rd-~~s~~~~~V~vI~kd-G~~~l~~ 114 (123)
|.|||++++++|+..+. || ..++++++|.+|+++ |++.++.
T Consensus 184 s~eea~~~a~~al~~~~-~d~~~s~~~i~v~vi~~~~~~~~l~~ 226 (233)
T 1ryp_F 184 NPDELIKAGVEAISQSL-RDESLTVDNLSIAIVGKDTPFTIYDG 226 (233)
T ss_dssp CHHHHHHHHHHHHTTSC-CSSCCCTTTEEEEEEETTEEEEEEEG
T ss_pred CHHHHHHHHHHHHHHHh-hcccCCCCcEEEEEEECCCCEEECCH
Confidence 99999999999999999 88 689999999999999 6777764
No 41
>1iru_D 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unf_C* 3une_C* 3unh_C 3unb_C*
Probab=99.84 E-value=4.9e-21 Score=146.92 Aligned_cols=106 Identities=12% Similarity=0.070 Sum_probs=92.2
Q ss_pred cccchhhHHHhhhc----cccccccc---ceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCCCCC--CH
Q psy7294 4 QNSNSLTPILFMNK----TLALNSKK---WTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDL--TV 74 (123)
Q Consensus 4 ~~~~~~~~~~~~~~----~~~~~~~~---~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~~m--t~ 74 (123)
..+++|+++++.+. .+||.+.. |||+ ++||+||++||.|++.+++++|+|+|+.+++++||+.|+++| |.
T Consensus 106 ~la~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~-~~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~m~~s~ 184 (248)
T 1iru_D 106 YITRYIASLKQRYTQSNGRRPFGISALIVGFDF-DGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDEAIETD 184 (248)
T ss_dssp HHHHHHHHHHHHTTSBTTBCCCCEEEEEEEECS-SSCEEEEEECTTSCEEEBSEEEESTTHHHHHHHHTTTCCSSTTCSH
T ss_pred HHHHHHHHHHHHHhccCCcccccEEEEEEEEeC-CCCcEEEEEcCCCcEEEeeEEEECCCcHHHHHHHHHhhcccccCCH
Confidence 35678888885532 34777643 6796 568999999999999999999999999999999999999999 99
Q ss_pred HHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCC-eEEee
Q psy7294 75 QEAYSVLKQCVHHMKRRTVLSYPKFTVKVLDRTG-TVNVL 113 (123)
Q Consensus 75 eEAi~L~~k~i~~a~~Rd~~s~~~~~V~vI~kdG-~~~l~ 113 (123)
|||++++++||..+.+ .++++++|++|+++| ++.++
T Consensus 185 eea~~la~~al~~~~~---~sg~~i~v~vi~~~g~~~~l~ 221 (248)
T 1iru_D 185 DLTIKLVIKALLEVVQ---SGGKNIELAVMRRDQSLKILN 221 (248)
T ss_dssp HHHHHHHHHHHHTTSC---TTSTTCCEEEEESSSCEECCC
T ss_pred HHHHHHHHHHHHHHHc---CCCCcEEEEEEECCCcEEECC
Confidence 9999999999999987 589999999999998 66654
No 42
>1j2p_A Alpha-ring, proteasome alpha subunit; hydrolase; 2.60A {Archaeoglobus fulgidus} SCOP: d.153.1.4 PDB: 1j2q_A*
Probab=99.84 E-value=1.7e-20 Score=143.69 Aligned_cols=106 Identities=16% Similarity=0.151 Sum_probs=92.1
Q ss_pred cccchhhHHHhh--hc--cccccccc---ceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCCCCCCHHH
Q psy7294 4 QNSNSLTPILFM--NK--TLALNSKK---WTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQE 76 (123)
Q Consensus 4 ~~~~~~~~~~~~--~~--~~~~~~~~---~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~~mt~eE 76 (123)
..++++++++.. ++ ..||.+.. |+| +||+||++||.|++.+++++|+|+|+.+++++||+.|+++||.||
T Consensus 111 ~la~~l~~~~~~y~~~~~~rp~~v~~lvaG~D---~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~ee 187 (246)
T 1j2p_A 111 ELAKKICDFKQQYTQYGGVRPFGVSLLIAGVN---EVPKLYETDPSGALLEYKATAIGMGRMAVTEFFEKEYRDDLSFDD 187 (246)
T ss_dssp HHHHHHHHHHHHTTSBTTBCCCCEEEEEEEES---SSEEEEEECTTCCEEEBSEEEESTTHHHHHHHHHHHCCTTCCHHH
T ss_pred HHHHHHHHHHHHHhcccCcccccEEEEEEEEC---CCCEEEEECCCceEEeeeEEEECCCcHHHHHHHHHHhccCCCHHH
Confidence 346778888843 22 34776643 678 589999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcccccCCcEEEEEEc-CC-CeEEee
Q psy7294 77 AYSVLKQCVHHMKRRTVLSYPKFTVKVLD-RT-GTVNVL 113 (123)
Q Consensus 77 Ai~L~~k~i~~a~~Rd~~s~~~~~V~vI~-kd-G~~~l~ 113 (123)
|++++++||..+.+| ..++++++|.+|+ ++ |++.++
T Consensus 188 a~~la~~al~~~~~~-~~sg~~i~v~vi~~~~~~~~~l~ 225 (246)
T 1j2p_A 188 AMVLGLVAMGLSIES-ELVPENIEVGYVKVDDRTFKEVS 225 (246)
T ss_dssp HHHHHHHHHHHHHTS-CCCGGGEEEEEEETTTCCCEECC
T ss_pred HHHHHHHHHHHHhhc-cCCCCcEEEEEEEcCCCceEECC
Confidence 999999999999999 8999999999999 64 787765
No 43
>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=99.84 E-value=8.6e-21 Score=147.43 Aligned_cols=107 Identities=15% Similarity=0.192 Sum_probs=92.1
Q ss_pred cccchhhHHHhhh----ccccccccc---ceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHccCCCCCCHHH
Q psy7294 4 QNSNSLTPILFMN----KTLALNSKK---WTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQE 76 (123)
Q Consensus 4 ~~~~~~~~~~~~~----~~~~~~~~~---~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~~mt~eE 76 (123)
..+++|++++... ...||.+.. ||| ..||+||++||+|++.+++++|+|+|+.+++++||+.|+++||.||
T Consensus 115 ~la~~l~~~~~~yt~~~~~rP~~v~~lvaG~D--~~gp~Ly~iDp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~ee 192 (264)
T 3h4p_A 115 MLAKKICDIKQAYTQHGGVRPFGVSLLIAGID--KNEARLFETDPSGALIEYKATAIGSGRPVVMELLEKEYRDDITLDE 192 (264)
T ss_dssp HHHHHHHHHHHHTTSBSSCCCCSEEEEEEEEE--TTEEEEEEECTTCCCEEESEEEESTTHHHHTTTHHHHCCTTCCSHH
T ss_pred HHHHHHHHHHHHHhhccCCCCeeEEEEEEEEe--CCcCEEEEECCCceEEecCeEEECCCHHHHHHHHHHhccCCCCHHH
Confidence 3467788887442 245776643 679 4689999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcccccCCcEEEEEEcCCC--eEEeec
Q psy7294 77 AYSVLKQCVHHMKRRTVLSYPKFTVKVLDRTG--TVNVLQ 114 (123)
Q Consensus 77 Ai~L~~k~i~~a~~Rd~~s~~~~~V~vI~kdG--~~~l~~ 114 (123)
|++++++||..+.+| .++++++|++|++++ ++.++.
T Consensus 193 a~~la~~al~~a~~~--~sg~~iev~vi~~~~~~~~~l~~ 230 (264)
T 3h4p_A 193 GLELAITALTKANED--IKPENVDVCIITVKDAQFKKIPV 230 (264)
T ss_dssp HHHHHHHHHHHHSSS--CCTTSEEEEEEETTTTEEEECCT
T ss_pred HHHHHHHHHHHHHhc--cCCCeEEEEEEEeCCCcEEECCH
Confidence 999999999999988 799999999999864 666653
No 44
>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G* 3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 4b4t_G 4g4s_G* 3bdm_F* 1fnt_G* 2zcy_F*
Probab=99.83 E-value=1.8e-20 Score=147.67 Aligned_cols=101 Identities=14% Similarity=0.055 Sum_probs=90.9
Q ss_pred cccchhhHHHhh----hccccccccc---ceeCCCCceEEEEECCCCceeeeCeEEEcccHHHHHHHHHcc---CCCCCC
Q psy7294 4 QNSNSLTPILFM----NKTLALNSKK---WTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKY---YKPDLT 73 (123)
Q Consensus 4 ~~~~~~~~~~~~----~~~~~~~~~~---~~D~~~~gP~Ly~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~---y~~~mt 73 (123)
..+++|+++++. ++..||.+.. |||+ .||+||++||+|++.+++++|+|+|+.+++++||+. |+++||
T Consensus 111 ~lA~~l~~~l~~yt~~~~~rP~gv~~lvaG~D~--~Gp~Ly~iDp~G~~~~~~~~aiGsgs~~a~~~Lek~~~~~~~~ms 188 (288)
T 3nzj_F 111 AFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDK--NGAHLYMLEPSGSYWGYKGAATGKGRQSAKAELEKLVDHHPEGLS 188 (288)
T ss_dssp HHHHHHHHHHHHTTSCTTBCCCCEEEEEEEEET--TEEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHHHHCTTCCC
T ss_pred HHHHHHHHHHHHHHHhccCCCceEEEEEEEEeC--CCCEEEEECCCCCEEEcCEEEEcCcHHHHHHHHHHhccccCCCCC
Confidence 456788888854 3466877743 6894 689999999999999999999999999999999999 999999
Q ss_pred HHHHHHHHHHHHHHHHhcccccCCcEEEEEEcC
Q psy7294 74 VQEAYSVLKQCVHHMKRRTVLSYPKFTVKVLDR 106 (123)
Q Consensus 74 ~eEAi~L~~k~i~~a~~Rd~~s~~~~~V~vI~k 106 (123)
.|||++++++||..+.+|+..++++++|++|++
T Consensus 189 ~eEAv~la~~al~~a~~~~~~~~~~iev~vIt~ 221 (288)
T 3nzj_F 189 AREAVKQAAKIIYLAHEDNKEKDFELEISWCSL 221 (288)
T ss_dssp HHHHHHHHHHHHHHHGGGGTTSEEEEEEEEEET
T ss_pred HHHHHHHHHHHHHHHHhcccCCCCeEEEEEEEe
Confidence 999999999999999999989999999999999
No 45
>2jay_A Proteasome; hydrolase; 1.99A {Mycobacterium tuberculosis} PDB: 3mka_C 3mi0_C* 2fhg_H* 2fhh_H 3krd_C* 3mfe_G 3hfa_H* 3h6i_C 3h6f_C 3hf9_H 3mfe_H
Probab=99.82 E-value=2.2e-20 Score=147.24 Aligned_cols=109 Identities=17% Similarity=0.099 Sum_probs=84.5
Q ss_pred cccchhhHHHhhhccc---cccc---ccceeCCCCc-----eEEEEECCCCcee--eeCeEEEcccHHHHHHHHHccCCC
Q psy7294 4 QNSNSLTPILFMNKTL---ALNS---KKWTDCNTFG-----VTLYKGDPYGFML--EVPYAYIGINGFLTASLVDKYYKP 70 (123)
Q Consensus 4 ~~~~~~~~~~~~~~~~---~~~~---~~~~D~~~~g-----P~Ly~iD~~Gs~~--~~~~~a~G~Gs~~~~~~Ld~~y~~ 70 (123)
..++.|++++++++.- ||.+ =.|||+ +++ |+||++||+|++. +++++|+|+|+.+++++||+.|++
T Consensus 135 ~la~~la~~l~~~~~~~~rpf~v~~lvaG~D~-~g~~~~~~p~Ly~iDp~G~~~e~~~~~~aiGsgs~~a~~~Le~~~~~ 213 (291)
T 2jay_A 135 GKINRLAIMVRGNLAAAMQGLLALPLLAGYDI-HASDPQSAGRIVSFDAAGGWNIEEEGYQAVGSGSLFAKSSMKKLYSQ 213 (291)
T ss_dssp HHHHHHHHHHHTCHHHHHHTCCCEEEEEEECT-TCSCSTTCEEEEEECTTSCEEECSSSEEEESTTHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHhhhhhccccceeEEEEEEeC-CCCcCCCCCEEEEECCCCcEEecCCCEEEEecCHHHHHHHHHHhcCC
Confidence 3467888888876432 4544 236795 445 9999999999999 999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhcccccCCc-------EEEEEEcCCCeEEee
Q psy7294 71 DLTVQEAYSVLKQCVHHMKRRTVLSYPK-------FTVKVLDRTGTVNVL 113 (123)
Q Consensus 71 ~mt~eEAi~L~~k~i~~a~~Rd~~s~~~-------~~V~vI~kdG~~~l~ 113 (123)
+||.|||++++++||..+.+||+.+++. ++|++|+++|++.++
T Consensus 214 ~ms~eEAi~la~~aL~~a~~~D~~sg~~e~vr~~~~~v~vi~~dg~~~l~ 263 (291)
T 2jay_A 214 VTDGDSGLRVAVEALYDAADDDSATGGPDLVRGIFPTAVIIDADGAVDVP 263 (291)
T ss_dssp CCSHHHHHHHHHHHHHHC----------------CCEEEEEETTEEEECC
T ss_pred CCCHHHHHHHHHHHHHHHHhhCCCCCCcccccccCCEEEEEECCCeEEcC
Confidence 9999999999999999999999887764 269999999988865
No 46
>1g3k_A ATP-dependent protease HSLV; hydrolase; 1.90A {Haemophilus influenzae} SCOP: d.153.1.4 PDB: 1g3i_G 1jjw_A 1kyi_G* 1ofh_G* 1ofi_G* 1e94_A* 1g4a_B* 1g4b_M 1hqy_A* 1ht1_C* 1ht2_A* 1ned_A
Probab=99.77 E-value=4.9e-19 Score=129.12 Aligned_cols=95 Identities=15% Similarity=0.161 Sum_probs=83.5
Q ss_pred cccchhhHHHhhhcccc-cccc-cceeCCCCceEEEEECCCCceeeeC---eEEEcccHHHHHHHHHccCC-CCCCHHHH
Q psy7294 4 QNSNSLTPILFMNKTLA-LNSK-KWTDCNTFGVTLYKGDPYGFMLEVP---YAYIGINGFLTASLVDKYYK-PDLTVQEA 77 (123)
Q Consensus 4 ~~~~~~~~~~~~~~~~~-~~~~-~~~D~~~~gP~Ly~iD~~Gs~~~~~---~~a~G~Gs~~~~~~Ld~~y~-~~mt~eEA 77 (123)
+.+..|+..++++++++ +... .++| ||+||++||+|++.+++ +.|+|+|+.+++++||+.|+ ++||.+
T Consensus 73 ~~~~~l~~~~~~~~~~r~~~~~l~g~d----~p~Ly~~d~~G~~~~~~~~~~~a~Gsgs~~a~~~le~~~~~~~mt~~-- 146 (174)
T 1g3k_A 73 KSAVELAKDWRTDRALRKLEAMLIVAD----EKESLIITGIGDVVQPEEDQILAIGSGGNYALSAARALVENTELSAH-- 146 (174)
T ss_dssp HHHHHHHHHHHHSTTGGGCCCEEEEEC----SSCEEEEETTTEEECCCTTCEEEESTTHHHHHHHHHHHHHHCCCCHH--
T ss_pred HHHHHHHHHHHhccCcCcceEEEEEEC----CCEEEEEcCCCcEEecCCCcEEEEcccHHHHHHHHHHhcccCCCCHH--
Confidence 44567899999988765 3332 2467 79999999999999988 99999999999999999999 999955
Q ss_pred HHHHHHHHHHHHhcccccCCcEEEEEEc
Q psy7294 78 YSVLKQCVHHMKRRTVLSYPKFTVKVLD 105 (123)
Q Consensus 78 i~L~~k~i~~a~~Rd~~s~~~~~V~vI~ 105 (123)
+|+++|++.+.+||+.++++++|.+|+
T Consensus 147 -~l~~~al~~a~~rd~~sg~~i~v~~i~ 173 (174)
T 1g3k_A 147 -EIVEKSLRIAGDICVFTNTNFTIEELP 173 (174)
T ss_dssp -HHHHHHHHHHHHHCTTCCSCCEEEEEC
T ss_pred -HHHHHHHHHHHHhccccCCceEEEEec
Confidence 799999999999999999999999996
No 47
>2z3b_A ATP-dependent protease HSLV; N-terminal nucleophIle hydrolase; 2.50A {Bacillus subtilis} SCOP: d.153.1.4 PDB: 2z3a_A 1yyf_D* 3ty6_A
Probab=99.76 E-value=1e-18 Score=128.45 Aligned_cols=94 Identities=16% Similarity=0.097 Sum_probs=81.9
Q ss_pred cchhhHHHhhhccc-ccccccceeCCCCceEEEEECCCCceee--eCeEEEcccHHHHHHHHHccCCC---CCCHHHHHH
Q psy7294 6 SNSLTPILFMNKTL-ALNSKKWTDCNTFGVTLYKGDPYGFMLE--VPYAYIGINGFLTASLVDKYYKP---DLTVQEAYS 79 (123)
Q Consensus 6 ~~~~~~~~~~~~~~-~~~~~~~~D~~~~gP~Ly~iD~~Gs~~~--~~~~a~G~Gs~~~~~~Ld~~y~~---~mt~eEAi~ 79 (123)
+..|+.++.+.+++ ||.+...+= +||+||++||+|++.+ ++++|+|+|+.+++++||+.|++ +||.||
T Consensus 81 ~~~l~~~~~~~~~~rp~~~~~lva---d~p~ly~~d~~G~~~~~~~~~~a~Gsgs~~a~~~le~~~~~~~~~mt~ee--- 154 (180)
T 2z3b_A 81 AVELAKEWRSDKVLRKLEAMLIVM---NQDTLLLVSGTGEVIEPDDGILAIGSGGNYALAAGRALKKHAGESMSASE--- 154 (180)
T ss_dssp HHHHHHHHHHCTTGGGCCCCEEEE---CSSCEEEECTTCCEECCSSSEEEESTTHHHHHHHHHHHHHHHGGGCCHHH---
T ss_pred HHHHHHHHHhhhCcCcceEEEEEE---cCCeEEEECCCCcEEEeCCCEEEECCCHHHHHHHHHHhhhccCCCCCHHH---
Confidence 34578888887776 777655443 2699999999999998 49999999999999999999998 999999
Q ss_pred HHHHHHHHHHhcccccCCcEEEEEEc
Q psy7294 80 VLKQCVHHMKRRTVLSYPKFTVKVLD 105 (123)
Q Consensus 80 L~~k~i~~a~~Rd~~s~~~~~V~vI~ 105 (123)
++++|++.+.+||+.++++++|.+|+
T Consensus 155 l~~~al~~a~~rd~~sg~~i~v~~i~ 180 (180)
T 2z3b_A 155 IARAALETAGEICVYTNDQIILEELE 180 (180)
T ss_dssp HHHHHHHHHHHHCTTCCSCCEEEEEC
T ss_pred HHHHHHHHHHHhcCccCCeEEEEEEC
Confidence 57899999999999999999999983
No 48
>1m4y_A ATP-dependent protease HSLV; N-terminal catalytic threonine residue, hydrolase; 2.10A {Thermotoga maritima} SCOP: d.153.1.4
Probab=99.73 E-value=5.5e-18 Score=123.11 Aligned_cols=90 Identities=11% Similarity=0.151 Sum_probs=78.2
Q ss_pred hhHHHhhhcccc-cccccceeCCCCceEEEEECCCCceeeeC--eEEEcccHHHHHHHHHccCC-CCCCHHHHHHHHHHH
Q psy7294 9 LTPILFMNKTLA-LNSKKWTDCNTFGVTLYKGDPYGFMLEVP--YAYIGINGFLTASLVDKYYK-PDLTVQEAYSVLKQC 84 (123)
Q Consensus 9 ~~~~~~~~~~~~-~~~~~~~D~~~~gP~Ly~iD~~Gs~~~~~--~~a~G~Gs~~~~~~Ld~~y~-~~mt~eEAi~L~~k~ 84 (123)
|+..++++++.+ |.+...+= + ||+||++||+|++.+++ +.|+|+|+.+++++||+.|+ ++||. ++|+++|
T Consensus 78 l~~~~~~~~~~~~~~~~~lv~--D-~p~Ly~~d~~G~~~~~~~~~~a~Gsgs~~a~~~le~~~~~~~ms~---~~l~~~a 151 (171)
T 1m4y_A 78 LAKDWRTDRVLRRLEALLLVA--D-KENIFIISGNGEVIQPDDDAAAIGSGGPYALAAAKALLRNTDLSA---REIVEKA 151 (171)
T ss_dssp HHHHHHHCTTGGGCCCEEEEE--C-SSCEEEECTTSCEECCSSSEEEESTTHHHHHHHHHHHHHHCCCCH---HHHHHHH
T ss_pred HHHHHHHhCCCCceEEEEEEE--c-CCEEEEECCCCCEEecCCCEEEECCcHHHHHHHHHHhcccCCCCH---HHHHHHH
Confidence 455778877665 66644322 2 79999999999999998 99999999999999999999 99996 6799999
Q ss_pred HHHHHhcccccCCcEEEEEE
Q psy7294 85 VHHMKRRTVLSYPKFTVKVL 104 (123)
Q Consensus 85 i~~a~~Rd~~s~~~~~V~vI 104 (123)
++.+.+||+.++++++|.++
T Consensus 152 l~~a~~rd~~sg~~i~v~~~ 171 (171)
T 1m4y_A 152 MTIAGEICIYTNQNIVIEEV 171 (171)
T ss_dssp HHHHHHHCTTCCSCCEEEEC
T ss_pred HHHHHHhCcccCCeEEEEEC
Confidence 99999999999999999864
No 49
>3fpw_A HBPS, extracellular HAEM-binding protein; heme binding protein; 1.60A {Streptomyces reticuli} PDB: 3fpv_A
Probab=71.65 E-value=9.6 Score=27.89 Aligned_cols=40 Identities=25% Similarity=0.375 Sum_probs=33.9
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCeEEe
Q psy7294 69 KPDLTVQEAYSVLKQCVHHMKRRTVLSYPKFTVKVLDRTGTVNV 112 (123)
Q Consensus 69 ~~~mt~eEAi~L~~k~i~~a~~Rd~~s~~~~~V~vI~kdG~~~l 112 (123)
.+.+|.++|.+++..++..+.++. -.+.|.|+|..|....
T Consensus 62 ~~~ltl~~A~~l~~aA~~~A~~~g----~pV~IaVvD~~G~lla 101 (192)
T 3fpw_A 62 STHLTLEAATKAARAAVEAAEKDG----RHVSVAVVDRNGNTLV 101 (192)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHTT----CCCEEEEEETTSCEEE
T ss_pred cCCCCHHHHHHHHHHHHHHHHhcC----CCEEEEEEeCCCCEEE
Confidence 467999999999999999999853 3799999999996544
No 50
>3fau_A NEDD4-binding protein 2; SMR, small-MUTS related domain, nicking endonuclease, alternative splicing, ATP-binding, coiled coil, cytoplasm, hydrolase; 1.90A {Homo sapiens} SCOP: d.68.8.1
Probab=71.44 E-value=6 Score=24.40 Aligned_cols=40 Identities=20% Similarity=0.152 Sum_probs=26.1
Q ss_pred CCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCeE
Q psy7294 71 DLTVQEAYSVLKQCVHHMKRRTVLSYPKFTVKVLDRTGTV 110 (123)
Q Consensus 71 ~mt~eEAi~L~~k~i~~a~~Rd~~s~~~~~V~vI~kdG~~ 110 (123)
+|+.+||+..+.+.+..+..+...+.+.-.|.||+=.|.+
T Consensus 7 Gl~v~eA~~~l~~~l~~~~~~~~~~~g~~~v~II~GkG~h 46 (82)
T 3fau_A 7 GLHVDEALEHLMRVLEKKTEEFKQNGGKPYLSVITGRGNH 46 (82)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCC---
T ss_pred CCcHHHHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCC
Confidence 6899999999999888876421111334468888876653
No 51
>2a2l_A Unknown; structural genomics, PSI, protein structure initiat YORK SGX research center for structural genomics, NYSGXRC, function; 2.20A {Klebsiella pneumoniae} SCOP: d.110.9.1
Probab=67.51 E-value=7.5 Score=26.89 Aligned_cols=39 Identities=15% Similarity=0.175 Sum_probs=32.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCeEEe
Q psy7294 70 PDLTVQEAYSVLKQCVHHMKRRTVLSYPKFTVKVLDRTGTVNV 112 (123)
Q Consensus 70 ~~mt~eEAi~L~~k~i~~a~~Rd~~s~~~~~V~vI~kdG~~~l 112 (123)
+.+|.++|.+++..++..+.++ +-.+.|.|+|..|....
T Consensus 10 ~~lt~~~A~~l~~aa~~~A~~~----g~~v~IaVvD~~G~ll~ 48 (145)
T 2a2l_A 10 QTITLAAAQQMAAAVEKKATEI----NVAVVFSVVDRGGNTLL 48 (145)
T ss_dssp EEECHHHHHHHHHHHHHHHHHT----TCCCEEEEEETTSCEEE
T ss_pred cCCCHHHHHHHHHHHHHHHHHc----CCCEEEEEEECCCCEEE
Confidence 4589999999999999999875 34799999999986543
No 52
>2d9i_A NEDD4-binding protein 2; SMR domain, N4BP2, BCL-3 binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.68.8.1
Probab=66.12 E-value=9.6 Score=24.14 Aligned_cols=39 Identities=21% Similarity=0.173 Sum_probs=26.9
Q ss_pred CCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCe
Q psy7294 71 DLTVQEAYSVLKQCVHHMKRRTVLSYPKFTVKVLDRTGT 109 (123)
Q Consensus 71 ~mt~eEAi~L~~k~i~~a~~Rd~~s~~~~~V~vI~kdG~ 109 (123)
.|+.+||+..+.+.|..+......+...-.|.||+=.|.
T Consensus 15 Gl~v~eA~~~L~~~L~~~~~~~~~~~g~~~v~IIhGkG~ 53 (96)
T 2d9i_A 15 GLHVDEALEHLMRVLEKKTEEFKQNGGKPYLSVITGRGN 53 (96)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEEECCCSG
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEEECcCC
Confidence 699999999999999887531111123346888886664
No 53
>2q8v_A NBLA protein; phycobilisome, nutrient starvation, disassembly, bleaching, protein binding; 2.50A {Thermosynechococcus vulcanus} PDB: 2qdo_A
Probab=54.63 E-value=12 Score=22.80 Aligned_cols=23 Identities=22% Similarity=0.296 Sum_probs=20.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcc
Q psy7294 70 PDLTVQEAYSVLKQCVHHMKRRT 92 (123)
Q Consensus 70 ~~mt~eEAi~L~~k~i~~a~~Rd 92 (123)
.+||.|+|.+++.+.++..+-||
T Consensus 28 ~~ls~EQAqe~Lve~~rQmMike 50 (63)
T 2q8v_A 28 SAMSLQEARELLLQASRLLMMKD 50 (63)
T ss_dssp HTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHHHHHHH
Confidence 47999999999999999887665
No 54
>2vkc_A NEDD4-binding protein 2; human BCL3 binding protein, alternative splicing, homologous recombination, mismatch repair, small MUTS related; NMR {Homo sapiens}
Probab=54.53 E-value=19 Score=24.37 Aligned_cols=39 Identities=21% Similarity=0.173 Sum_probs=26.6
Q ss_pred CCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCe
Q psy7294 71 DLTVQEAYSVLKQCVHHMKRRTVLSYPKFTVKVLDRTGT 109 (123)
Q Consensus 71 ~mt~eEAi~L~~k~i~~a~~Rd~~s~~~~~V~vI~kdG~ 109 (123)
+|+.+||+..+.+.|..+........+.-.|.||+-.|.
T Consensus 60 Gl~v~EA~~~L~~fL~~a~~~~~~~~g~~~v~IIhGkG~ 98 (135)
T 2vkc_A 60 GLHVDEALEHLMRVLEKKTEEFKQNGGKPYLSVITGRGN 98 (135)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHTCCCSEEEEECCSCS
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEEECCCc
Confidence 699999999999999887531101223336888886664
No 55
>1ojh_A NBLA; degradation protein, phycobilisome degradation, protein BIND; HET: MSE; 1.80A {Anabaena SP} SCOP: a.214.1.1
Probab=53.78 E-value=12 Score=22.85 Aligned_cols=23 Identities=17% Similarity=0.231 Sum_probs=19.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcc
Q psy7294 70 PDLTVQEAYSVLKQCVHHMKRRT 92 (123)
Q Consensus 70 ~~mt~eEAi~L~~k~i~~a~~Rd 92 (123)
.+||.|+|.+++.+.++..+-||
T Consensus 23 ~~ls~EQaqe~Lve~~rQmMike 45 (65)
T 1ojh_A 23 QNMSHDQAKDFLVKLYEQMVVRE 45 (65)
T ss_dssp HTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHHHHHHH
Confidence 47999999999999998887665
No 56
>3ub6_A Chemoreceptor TLPB; homodimer, four-helix bundle, PAS domain, membrane protein; 1.38A {Helicobacter pylori} PDB: 3ub7_A 3ub8_A 3ub9_A*
Probab=52.72 E-value=25 Score=24.69 Aligned_cols=49 Identities=16% Similarity=0.229 Sum_probs=33.1
Q ss_pred HHHHHHccCCCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCeEEee
Q psy7294 60 TASLVDKYYKPDLTVQEAYSVLKQCVHHMKRRTVLSYPKFTVKVLDRTGTVNVL 113 (123)
Q Consensus 60 ~~~~Ld~~y~~~mt~eEAi~L~~k~i~~a~~Rd~~s~~~~~V~vI~kdG~~~l~ 113 (123)
+.++++..|. .+|.+||.+.+++.|..+.. ..++-=+.++|.+|.-...
T Consensus 36 a~~~i~~~~~-~~~~~ea~~~a~~~l~~~r~----g~~~gY~fv~d~~g~~l~h 84 (181)
T 3ub6_A 36 LEQGIHEYYK-SFDNDTARKMALDYFKRIND----DKGMIYMVVVDKNGVVLFD 84 (181)
T ss_dssp HHHHHHHHHH-HSCHHHHHHHHHHHHHHHHH----TCSSCEEEEECTTCBEEEC
T ss_pred HHHHHHHHHH-hCCHHHHHHHHHHHHHhCcc----CCCCCEEEEEeCCCCEEEe
Confidence 4444444443 38999999999999988864 2332346677999975543
No 57
>1su0_B NIFU like protein ISCU; structural genomics, BSGC structure funded by NI protein structure initiative, PSI; 2.30A {Streptococcus pyogenes} SCOP: d.224.1.2
Probab=43.21 E-value=65 Score=22.41 Aligned_cols=54 Identities=15% Similarity=0.026 Sum_probs=39.9
Q ss_pred EEE-EECCCCceeeeCeEEEcccHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHHH
Q psy7294 35 TLY-KGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEAYSVLKQCVHHMK 89 (123)
Q Consensus 35 ~Ly-~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~~mt~eEAi~L~~k~i~~a~ 89 (123)
.|| .+|. |.+...+|.+.|-+...+-.=+=.++=.+.|++||.++...-...+.
T Consensus 45 ~l~lkv~~-g~I~d~~F~~~GCais~ASaS~mte~v~Gkt~~Ea~~i~~~f~~ml~ 99 (159)
T 1su0_B 45 SLTVKFDE-DKIEDIAFAGNGCTISTASSSMMTDAVIGKSKEEALALADIFSEMVQ 99 (159)
T ss_dssp EEEEEESS-SSEEEEEEEEECCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTT
T ss_pred EEEEEECC-CEEEEEEEEecCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHh
Confidence 466 5674 89999999999988776665555555579999999999876444433
No 58
>2zqe_A MUTS2 protein; alpha/beta, ATP-binding, DNA-binding, nucleotide-binding, DN protein; 1.70A {Thermus thermophilus}
Probab=39.68 E-value=61 Score=19.96 Aligned_cols=33 Identities=27% Similarity=0.325 Sum_probs=25.3
Q ss_pred CCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCC
Q psy7294 71 DLTVQEAYSVLKQCVHHMKRRTVLSYPKFTVKVLDRTG 108 (123)
Q Consensus 71 ~mt~eEAi~L~~k~i~~a~~Rd~~s~~~~~V~vI~kdG 108 (123)
+|+.|||...+.+.|..+..+. --+|.||.=-|
T Consensus 11 G~~~~eA~~~l~~fl~~a~~~g-----~~~v~IIHGkG 43 (83)
T 2zqe_A 11 GLTVAEALLEVDQALEEARALG-----LSTLRLLHGKG 43 (83)
T ss_dssp TCCHHHHHHHHHHHHHHHHHTT-----CSEEEEECCST
T ss_pred CCCHHHHHHHHHHHHHHHHHCC-----CCEEEEEECCC
Confidence 6999999999999999997542 23577776544
No 59
>3a1q_C Ubiquitin interaction motif-containing protein 1; protein complex, cytoplasm, nucleus, phosphoprotein, UBL conjugation, transcription regulation; 2.20A {Mus musculus}
Probab=36.62 E-value=26 Score=19.53 Aligned_cols=14 Identities=14% Similarity=0.242 Sum_probs=11.0
Q ss_pred CCCCHHHHHHHHHH
Q psy7294 70 PDLTVQEAYSVLKQ 83 (123)
Q Consensus 70 ~~mt~eEAi~L~~k 83 (123)
|+||+||-+.|+.+
T Consensus 2 p~mtEEEq~ALA~r 15 (45)
T 3a1q_C 2 PLGSEEEQFALALK 15 (45)
T ss_dssp CCSCHHHHHHHHHH
T ss_pred CcccHHHHHHHHHH
Confidence 68899988888654
No 60
>1cqm_A Ribosomal protein S6; alzheimer disease, oligomerization; 1.65A {Thermus thermophilus} SCOP: d.58.14.1 PDB: 1cqn_A 1qjh_A 1ris_A 1fka_F 1gix_I* 1hnw_F* 1hnx_F* 1hnz_F* 1hr0_F 1i94_F* 1i95_F* 1i96_F* 1i97_F* 1ibk_F* 1ibl_F* 1ibm_F 1j5e_F 1jgo_I* 1jgp_I* 1jgq_I* ...
Probab=35.66 E-value=64 Score=20.50 Aligned_cols=44 Identities=9% Similarity=0.021 Sum_probs=30.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCeEEeeccccc
Q psy7294 69 KPDLTVQEAYSVLKQCVHHMKRRTVLSYPKFTVKVLDRTGTVNVLQDLKY 118 (123)
Q Consensus 69 ~~~mt~eEAi~L~~k~i~~a~~Rd~~s~~~~~V~vI~kdG~~~l~~~~k~ 118 (123)
+|+++.++.-.++.+.-..+.. .+-+|.-++.=|.+.|..++|+
T Consensus 11 ~p~l~~e~~~~~~~~~~~~i~~------~gg~i~~~e~wG~R~LAY~I~k 54 (101)
T 1cqm_A 11 NPNLDQSQLALEKEIIQRALEN------YGARVEKVAILGLRRLAYPIAK 54 (101)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHH------TTCEEEEEEEEEEEEEEEEETT
T ss_pred CCCCCHHHHHHHHHHHHHHHHH------CCCEEEEEEeecCcccccCcCC
Confidence 6889998888888776555543 2233444566688999888776
No 61
>2j5a_A 30S ribosomal protein S6; ribonucleoprotein, RIBO protein S6, RNA-binding, rRNA-binding, protein folding; 2.3A {Aquifex aeolicus} SCOP: d.58.14.1
Probab=35.46 E-value=73 Score=20.63 Aligned_cols=44 Identities=16% Similarity=0.162 Sum_probs=31.9
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCeEEeeccccc
Q psy7294 69 KPDLTVQEAYSVLKQCVHHMKRRTVLSYPKFTVKVLDRTGTVNVLQDLKY 118 (123)
Q Consensus 69 ~~~mt~eEAi~L~~k~i~~a~~Rd~~s~~~~~V~vI~kdG~~~l~~~~k~ 118 (123)
+|+++.++.-.++.+.-..+.. .+-+|.-++.=|.+.|..++|+
T Consensus 17 ~p~l~~e~~~~~v~~~~~~i~~------~Gg~i~~~e~wG~R~LAY~I~K 60 (110)
T 2j5a_A 17 KPTLSEEEMKKKFEQVKEFIKQ------KGGEILYEEDWGMRQLAYPIQK 60 (110)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHH------TTEEEEEEEEEEEEECSSCSSS
T ss_pred CCCCCHHHHHHHHHHHHHHHHH------CCCEEEEEEeecCcccccCcCC
Confidence 6899998888888776666543 3444555666689999888776
No 62
>3qd7_X Uncharacterized protein YDAL; alpha/beta/alpha fold, endonuclease, hydrolase; 2.30A {Escherichia coli}
Probab=35.31 E-value=68 Score=21.79 Aligned_cols=59 Identities=12% Similarity=0.132 Sum_probs=39.9
Q ss_pred eeeCeEEEcccHHHHHHHHHccCCC-------CCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCe
Q psy7294 46 LEVPYAYIGINGFLTASLVDKYYKP-------DLTVQEAYSVLKQCVHHMKRRTVLSYPKFTVKVLDRTGT 109 (123)
Q Consensus 46 ~~~~~~a~G~Gs~~~~~~Ld~~y~~-------~mt~eEAi~L~~k~i~~a~~Rd~~s~~~~~V~vI~kdG~ 109 (123)
....|..-|........+=.-.|.+ +|+.+||...+.+.|..+..+ +.-+|.||.=-|.
T Consensus 22 ~~~~~~~~g~~~~~~~kLr~G~~~~~~~LDLHG~~~~EA~~~L~~fL~~a~~~-----g~r~V~IIHGKG~ 87 (137)
T 3qd7_X 22 QPLEFRREGLQHGVLDKLRSGKYPQQASLNLLRQPVEECRKMVFSFIQQALAD-----GLRNVLIIHGKGR 87 (137)
T ss_dssp SCCEEECTTCCTTTTHHHHSCCCCGGGEEECTTCCHHHHHHHHHHHHHHHHHT-----TCSEEEEECCCCS
T ss_pred CceEEecCCCChHHHHHHHCCCCCCCeEEECCCCCHHHHHHHHHHHHHHHHHC-----CCCEEEEEECCCC
Confidence 3344555566555555555556654 699999999999999998753 2336777876554
No 63
>1rfz_A Hypothetical protein APC35681; structural genomics, PSI, protein structure initiative, midwest center for structural genomics; 2.80A {Geobacillus stearothermophilus} SCOP: a.195.1.1
Probab=32.73 E-value=35 Score=24.46 Aligned_cols=23 Identities=26% Similarity=0.577 Sum_probs=18.4
Q ss_pred HHHccCCCCCCHHHHHHHHHHHH
Q psy7294 63 LVDKYYKPDLTVQEAYSVLKQCV 85 (123)
Q Consensus 63 ~Ld~~y~~~mt~eEAi~L~~k~i 85 (123)
.|++.|.|++|.||+.+-+.+.+
T Consensus 36 ~Lq~~y~p~l~~e~~~e~v~~vL 58 (168)
T 1rfz_A 36 YLQSKYHPDLTMEECIENVNRVI 58 (168)
T ss_dssp HHHTTTCSSCCHHHHHHHHHHHH
T ss_pred HhcCccCCCcCHHHHHHHHHHHH
Confidence 37788999999999988765544
No 64
>3cs5_A Phycobilisome degradation protein NBLA; photosynthesis, nutrient stress, bleaching, helix-turn-helix, partial merohedral twinning; 2.20A {Synechococcus SP}
Probab=32.08 E-value=10 Score=22.70 Aligned_cols=23 Identities=9% Similarity=0.187 Sum_probs=20.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcc
Q psy7294 70 PDLTVQEAYSVLKQCVHHMKRRT 92 (123)
Q Consensus 70 ~~mt~eEAi~L~~k~i~~a~~Rd 92 (123)
.+||.|+|.+++.+.++..+-||
T Consensus 26 ~~ls~EQaqe~Lve~~rQmmike 48 (59)
T 3cs5_A 26 RDISREDLEDLFIEVVRQKMAHE 48 (59)
T ss_dssp SSSCTGGGTHHHHTHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999998887665
No 65
>1y9i_A Low temperature requirement C protein; structural genomics, protein structure initiative, PSI; 1.80A {Listeria monocytogenes} SCOP: a.195.1.1
Probab=31.47 E-value=43 Score=24.19 Aligned_cols=23 Identities=13% Similarity=0.390 Sum_probs=19.1
Q ss_pred HHHccCCCCCCHHHHHHHHHHHH
Q psy7294 63 LVDKYYKPDLTVQEAYSVLKQCV 85 (123)
Q Consensus 63 ~Ld~~y~~~mt~eEAi~L~~k~i 85 (123)
.|++.|.|++|.||+.+-+++.+
T Consensus 34 ~Lq~~y~p~l~~e~~~e~v~~vL 56 (178)
T 1y9i_A 34 FLQQKYHPGLELDICRQNVEHVL 56 (178)
T ss_dssp HHHTTTSTTCCHHHHHHHHHHHH
T ss_pred HhcCccCCCcCHHHHHHHHHHHh
Confidence 67888999999999998766554
No 66
>1ztd_A Hypothetical protein PFU-631545-001; structural genomics, southeast collaboratory for structural genomics, secsg; 2.00A {Pyrococcus furiosus} SCOP: a.149.1.2
Probab=31.40 E-value=35 Score=23.17 Aligned_cols=27 Identities=19% Similarity=0.298 Sum_probs=17.3
Q ss_pred HHHHHHccC-CCCCCHHHHHHHHHHHHH
Q psy7294 60 TASLVDKYY-KPDLTVQEAYSVLKQCVH 86 (123)
Q Consensus 60 ~~~~Ld~~y-~~~mt~eEAi~L~~k~i~ 86 (123)
+..++-..| +..+|.|||++++++-+.
T Consensus 73 aEA~iAyAWleG~is~eEaveilk~nl~ 100 (133)
T 1ztd_A 73 AEALIAKAWLMGLISEREAVEIIKKNLY 100 (133)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhccccHHHHHHHHHhcCc
Confidence 333333333 346999999999876543
No 67
>3fxd_A Protein ICMQ; helix bundle, helix-turn-helix, unknown function; 2.10A {Legionella pneumophila} PDB: 3fxe_A
Probab=31.10 E-value=41 Score=19.90 Aligned_cols=29 Identities=7% Similarity=0.119 Sum_probs=17.8
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcccccCCc
Q psy7294 69 KPDLTVQEAYSVLKQCVHHMKRRTVLSYPK 98 (123)
Q Consensus 69 ~~~mt~eEAi~L~~k~i~~a~~Rd~~s~~~ 98 (123)
+..+|.|++-. +++|+.++.+.-....++
T Consensus 2 kd~lt~eq~~a-ILkaLdeaIe~GPWe~SN 30 (57)
T 3fxd_A 2 KDQLSDEQKET-ILKALNDAIEKGPWDKSN 30 (57)
T ss_dssp --CCCHHHHHH-HHHHHHHHHHHSCTTSCH
T ss_pred cchhhHHHHHH-HHHHHHHHHHcCCchHHH
Confidence 46789888755 456888887654433333
No 68
>2f3o_A PFLD, PFL2, pyruvate formate-lyase 2; glycerol dehydratase, glycyl R hyperthermophilic, unknown function; HET: PGE; 2.90A {Archaeoglobus fulgidus}
Probab=30.75 E-value=75 Score=27.80 Aligned_cols=60 Identities=13% Similarity=0.043 Sum_probs=42.3
Q ss_pred eEEEcccHHHHHHHHHccCCCC-CCHHHHHHHHHHHHHHHHhccc---------ccC----CcEEEEEEcCCCe
Q psy7294 50 YAYIGINGFLTASLVDKYYKPD-LTVQEAYSVLKQCVHHMKRRTV---------LSY----PKFTVKVLDRTGT 109 (123)
Q Consensus 50 ~~a~G~Gs~~~~~~Ld~~y~~~-mt~eEAi~L~~k~i~~a~~Rd~---------~s~----~~~~V~vI~kdG~ 109 (123)
..+.|.=.++..|++++-.+.+ +|+|||.+|+..-+..+..... ++| -++.|+=.+.||.
T Consensus 272 ~~s~GR~Dq~L~Pyy~~Dl~~G~lt~eeA~Eli~~f~ikl~~~~~~r~~~~~~~~~G~~~~~~~~iGG~~~dG~ 345 (776)
T 2f3o_A 272 AISMGRIDQYLYPFFKKDIGEGRINRELAFDILANLWIKTNEIVPAFDSLLEQYFSGQATNQAVTIGGCDIYGN 345 (776)
T ss_dssp CEECCSHHHHSHHHHHHHTTTTSSCHHHHHHHHHHHHHHTTSBCCCCCTTHHHHSTTTCCCCEEEEECBCTTSC
T ss_pred cccCccHHHHHHHHHHhHHhcCCCCHHHHHHHHHHHHHHhhcccccCChhhhhccCCCCcccEEEECCcCCCCC
Confidence 4577888999999999988877 8999999998865544432210 112 2456666787773
No 69
>2ysr_A DEP domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.56 E-value=71 Score=20.61 Aligned_cols=32 Identities=22% Similarity=0.372 Sum_probs=24.6
Q ss_pred cHHHHHHHHHc-----cCCCCCCHHHHHHHHHHHHHH
Q psy7294 56 NGFLTASLVDK-----YYKPDLTVQEAYSVLKQCVHH 87 (123)
Q Consensus 56 Gs~~~~~~Ld~-----~y~~~mt~eEAi~L~~k~i~~ 87 (123)
|+.++..+++. .+.+..|.+||+.|...=+..
T Consensus 43 GsE~VdWL~~~l~~~~~fg~~~sR~eAv~lgq~Ll~~ 79 (105)
T 2ysr_A 43 AGEAVDWLYDLLRNNSNFGPEVTRQQTIQLLRKFLKN 79 (105)
T ss_dssp HHHHHHHHHHHHHHSSSSTTTCCHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHhcccccccCccCCHHHHHHHHHHHHHC
Confidence 67788888876 355689999999998766543
No 70
>2qq4_A Iron-sulfur cluster biosynthesis protein ISCU; zinc binding, iron-sulfur cluster binding, three conserved Cys, three beta strands; 1.85A {Thermus thermophilus}
Probab=30.50 E-value=76 Score=21.43 Aligned_cols=55 Identities=7% Similarity=-0.039 Sum_probs=40.4
Q ss_pred EEE-EECCCCceeeeCeEEEcccHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHHHh
Q psy7294 35 TLY-KGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEAYSVLKQCVHHMKR 90 (123)
Q Consensus 35 ~Ly-~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~~mt~eEAi~L~~k~i~~a~~ 90 (123)
.|| .+| -|.+...+|.+.|-+...+-.=+=.++=.+.|++||.++...-+..+..
T Consensus 44 ~l~l~v~-~~~I~d~~f~~~GCais~ASaS~~te~i~Gkt~~ea~~i~~~~~~ml~~ 99 (138)
T 2qq4_A 44 EVMVLLE-GDTIADIRFQGQGCAISTASASLMTEAVKGKKVAEALELSRKFQAMVVE 99 (138)
T ss_dssp EEEEEEE-TTEEEEEEEEEECCHHHHHHHHHHHHHHTTSBHHHHHHHHHHHHHHHTT
T ss_pred EEEEEEC-CCEEEEEEEEecCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhC
Confidence 455 454 5788899999999887666655545555899999999998876655544
No 71
>1xjs_A NIFU-like protein; SR17, structure, autostructure, iron-sulfur, zinc, northeast structural genomics consortium, NESG; NMR {Bacillus subtilis} SCOP: d.224.1.2 PDB: 2azh_A
Probab=30.31 E-value=74 Score=21.77 Aligned_cols=56 Identities=14% Similarity=0.059 Sum_probs=40.4
Q ss_pred EEE-EECCCCceeeeCeEEEcccHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHHHhc
Q psy7294 35 TLY-KGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEAYSVLKQCVHHMKRR 91 (123)
Q Consensus 35 ~Ly-~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~~mt~eEAi~L~~k~i~~a~~R 91 (123)
.|| .+| -|.+...+|.+.|-+...+-.=+=.++=.+.|++||.++...-...+..+
T Consensus 46 ~l~lkv~-~~~I~d~~f~~~GCais~ASaS~mte~v~Gkt~~Ea~~i~~~~~~ml~~~ 102 (147)
T 1xjs_A 46 RLTMKLD-GDIVEDAKFEGEGCSISMASASMMTQAIKGKDIETALSMSKIFSDMMQGK 102 (147)
T ss_dssp EEEEECC-SSBCCEEEEEEESSHHHHHHHHHHHHHHTTSBHHHHHHHHHHHHHHHHHC
T ss_pred EEEEEEC-CCeEEEEEEEecCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCC
Confidence 455 456 48888999999998876666544455557999999999988755544443
No 72
>3lvl_A NIFU-like protein; protein-protein complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PLP; 3.00A {Escherichia coli} PDB: 2l4x_A 2kqk_A 1q48_A 1r9p_A 1wfz_A
Probab=29.98 E-value=52 Score=22.03 Aligned_cols=52 Identities=13% Similarity=0.179 Sum_probs=38.2
Q ss_pred EEE-EECCCCceeeeCeEEEcccHHHHHHHHHccCCCCCCHHHHHHHHHHHHH
Q psy7294 35 TLY-KGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEAYSVLKQCVH 86 (123)
Q Consensus 35 ~Ly-~iD~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~~mt~eEAi~L~~k~i~ 86 (123)
.|| .+|.-|.+...+|.+.|-+...+-.=+=.+.=.+.|++||.+|..+.+.
T Consensus 43 ~l~l~v~~~~~I~d~~f~~~GCais~ASaS~~te~i~Gkt~~ea~~i~~~~i~ 95 (129)
T 3lvl_A 43 KLQIKVNDEGIIEDARFKTYGCGSAIASSSLVTEWVKGKSLDEAQAIKNTDIA 95 (129)
T ss_dssp EEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHHHHTTCCHHHHHTCCHHHHH
T ss_pred EEEEEECCCCeEEEEEEEecCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 455 6776688999999999988666654444444579999999998766543
No 73
>3cxb_A Protein SIFA; SIFA, SKIP, complex, virulence, cytoplasm, membrane, polymorphism, signaling protein; 2.60A {Salmonella typhimurium} PDB: 3hw2_A
Probab=28.06 E-value=70 Score=25.23 Aligned_cols=69 Identities=6% Similarity=0.030 Sum_probs=43.0
Q ss_pred cccHHHHHHHHHccCC--CCCCHHHHHHH--HHHHHHHHHhcccccC-------CcEEEEEEcCCC-eEEeecccccccc
Q psy7294 54 GINGFLTASLVDKYYK--PDLTVQEAYSV--LKQCVHHMKRRTVLSY-------PKFTVKVLDRTG-TVNVLQDLKYSDF 121 (123)
Q Consensus 54 G~Gs~~~~~~Ld~~y~--~~mt~eEAi~L--~~k~i~~a~~Rd~~s~-------~~~~V~vI~kdG-~~~l~~~~k~~~~ 121 (123)
+.|-.-|...|-+-++ .++|.|+..+. -++.+....++|-+.. ......|.|.|| ...|+..+..+.|
T Consensus 40 SThqaEAl~CI~eLcHp~~~~TrE~v~~~F~~LK~LA~PgykdnFq~~~~~~nDge~~F~I~Deng~~eILsIt~~~d~Y 119 (336)
T 3cxb_A 40 STGKAKADRCLHEMLFAERAPTRERLTEIFFELKELACASQRDRFQVHNPHENDATIILRIMDQNEENELLRITQNTDTF 119 (336)
T ss_dssp TTHHHHHHHHHHHHHSSSSCCCHHHHHHHHHHHHHHBCHHHHTTEEEECGGGCTTCEEEEEECTTCCSEEEEEEECSSEE
T ss_pred CCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhcCchhhhheeecCCCCCCcceEEEEEcCCCCceeEEEEEcCCcE
Confidence 3445555666666444 46999988886 3445555555554432 334566889999 8888877765555
Q ss_pred C
Q psy7294 122 K 122 (123)
Q Consensus 122 ~ 122 (123)
.
T Consensus 120 s 120 (336)
T 3cxb_A 120 S 120 (336)
T ss_dssp E
T ss_pred E
Confidence 4
No 74
>3s4o_A Protein tyrosine phosphatase-like protein; structural genomics, medical structural genomics of pathogen protozoa, MSGPP, unknown function; HET: MSE EPE; 2.30A {Leishmania major}
Probab=26.81 E-value=47 Score=21.81 Aligned_cols=28 Identities=14% Similarity=0.255 Sum_probs=18.1
Q ss_pred cccHHHHHHHHHccCCCCCCHHHHHHHHHH
Q psy7294 54 GINGFLTASLVDKYYKPDLTVQEAYSVLKQ 83 (123)
Q Consensus 54 G~Gs~~~~~~Ld~~y~~~mt~eEAi~L~~k 83 (123)
|..+.++.-+|-. ..+++.+||++.+++
T Consensus 121 ~RTg~~~a~~L~~--~~~~~~~~a~~~vr~ 148 (167)
T 3s4o_A 121 GRAPILVALALVE--YGNVSALDAIALIRE 148 (167)
T ss_dssp SHHHHHHHHHHHH--TTCCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 3334444444433 458999999998775
No 75
>1apy_B Aspartylglucosaminidase; glycosylasparaginase, hydrolase; HET: NAG BMA; 2.00A {Homo sapiens} SCOP: d.153.1.5 PDB: 1apz_B*
Probab=26.02 E-value=1.1e+02 Score=21.09 Aligned_cols=56 Identities=16% Similarity=0.068 Sum_probs=31.8
Q ss_pred eEEEcccHHHHHHHHHc----cCCCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCeE
Q psy7294 50 YAYIGINGFLTASLVDK----YYKPDLTVQEAYSVLKQCVHHMKRRTVLSYPKFTVKVLDRTGTV 110 (123)
Q Consensus 50 ~~a~G~Gs~~~~~~Ld~----~y~~~mt~eEAi~L~~k~i~~a~~Rd~~s~~~~~V~vI~kdG~~ 110 (123)
+.++|.|-.++...+-. ..+..++.+||.+-+. ..+.++ .....--|..++++|..
T Consensus 49 ~s~TG~GE~iiR~~~A~~iv~~m~~G~~~~~A~~~~i---~~~~~~--~~~~~ggvIa~d~~G~~ 108 (141)
T 1apy_B 49 AAATGNGDILMRFLPSYQAVEYMRRGEDPTIACQKVI---SRIQKH--FPEFFGAVICANVTGSY 108 (141)
T ss_dssp EEEEECHHHHGGGCHHHHHHHHHHTTCCHHHHHHHHH---HHHHHH--CTTCCEEEEEEETTSCE
T ss_pred EEeecChHHHHHHhHHHHHHHHHHcCCCHHHHHHHHH---HHHHHh--cCCCcEEEEEEeCCCCE
Confidence 56789986654433222 2236899999977654 444433 11123345667888853
No 76
>1tlq_A Hypothetical protein YPJQ; structural genomics, NYSGXRC, T1519 protein structure initiative, NEW YORK SGX research center structural genomics; 2.40A {Bacillus subtilis} SCOP: a.195.1.1
Probab=25.87 E-value=44 Score=24.40 Aligned_cols=24 Identities=13% Similarity=0.378 Sum_probs=19.2
Q ss_pred HHHHccCCCCCCHHHHHHHHHHHH
Q psy7294 62 SLVDKYYKPDLTVQEAYSVLKQCV 85 (123)
Q Consensus 62 ~~Ld~~y~~~mt~eEAi~L~~k~i 85 (123)
-.|++.|.|++|.|++.+-+.+.+
T Consensus 34 ~~Lq~~Y~p~lt~e~c~e~v~~VL 57 (189)
T 1tlq_A 34 QKLQEKYNPNLPLSVCMENVEKVL 57 (189)
T ss_dssp HHHTTTTCTTCCHHHHHHHHHHHT
T ss_pred HHHhcccCCCccHHHHHHHHHHHH
Confidence 456778999999999999766554
No 77
>2gdt_A Leader protein; P65 homolog; NSP1 (EC 3.4.22.-); beta-barrel, alpha-beta, replicase, structural genomics, PSI-2, protein structure initiative; NMR {Sars coronavirus} SCOP: d.346.1.1 PDB: 2hsx_A
Probab=25.55 E-value=56 Score=21.84 Aligned_cols=20 Identities=20% Similarity=0.124 Sum_probs=17.5
Q ss_pred CCCCHHHHHHHHHHHHHHHH
Q psy7294 70 PDLTVQEAYSVLKQCVHHMK 89 (123)
Q Consensus 70 ~~mt~eEAi~L~~k~i~~a~ 89 (123)
++++.|||++-++..+++-.
T Consensus 20 w~~~~EeALe~ar~~L~~g~ 39 (116)
T 2gdt_A 20 FGDSVEEALSEAREHLKNGT 39 (116)
T ss_dssp SCSSHHHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHhhcCC
Confidence 58999999999999998764
No 78
>3zs7_A Pyridoxal kinase; transferase, sleeping sickness; HET: ATP; 2.00A {Trypanosoma brucei}
Probab=25.22 E-value=65 Score=24.18 Aligned_cols=40 Identities=15% Similarity=0.144 Sum_probs=33.2
Q ss_pred EEEcccHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHHHhcc
Q psy7294 51 AYIGINGFLTASLVDKYYKPDLTVQEAYSVLKQCVHHMKRRT 92 (123)
Q Consensus 51 ~a~G~Gs~~~~~~Ld~~y~~~mt~eEAi~L~~k~i~~a~~Rd 92 (123)
..+|.|..|+-.++-.. .+.+.++|++.+..++..+.++-
T Consensus 223 ~~~GtGD~fsaal~a~l--~g~~~~~Av~~A~~~v~~~i~~t 262 (300)
T 3zs7_A 223 RYTGTGDVFAACLLAFS--HSHPMDVAIGKSMAVLQELIIAT 262 (300)
T ss_dssp CBTTHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHHHHHHT
T ss_pred CCcCHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHHHHHHH
Confidence 45899999998888775 57899999999999888887653
No 79
>1vmb_A 30S ribosomal protein S6; TM0603, structural genomics, JCSG, structure initiative, PSI, joint center for structural GENO translation; 1.70A {Thermotoga maritima} SCOP: d.58.14.1
Probab=25.11 E-value=1.1e+02 Score=20.87 Aligned_cols=45 Identities=13% Similarity=0.263 Sum_probs=31.0
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCeEEeeccccc
Q psy7294 69 KPDLTVQEAYSVLKQCVHHMKRRTVLSYPKFTVKVLDRTGTVNVLQDLKY 118 (123)
Q Consensus 69 ~~~mt~eEAi~L~~k~i~~a~~Rd~~s~~~~~V~vI~kdG~~~l~~~~k~ 118 (123)
+|+++.++.-.++.+.-..+.. .. +-+|.-++.=|.|.|..++|+
T Consensus 28 ~P~l~ee~v~~~ve~~~~~I~~----~~-GG~I~~ve~wG~R~LAY~I~K 72 (140)
T 1vmb_A 28 APNVPEEERENLVERVKKIIEE----RV-KGKIDKVERMGMRKFAYEIKK 72 (140)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHH----TT-CCEEEEEEEEEEEEEEEEETT
T ss_pred CCCCCHHHHHHHHHHHHHHHHh----cC-CCEEEEEEeecCcccccccCC
Confidence 6899999988888877666643 20 223444556688888888776
No 80
>3zqk_A VON willebrand factor; blood clotting, adamts-13, force sensor, VON willebrand DISE domain, haemostasis; HET: NAG; 1.70A {Homo sapiens} PDB: 3ppv_A 3ppx_A 3ppw_A 3ppy_A 3gxb_A*
Probab=24.67 E-value=1.7e+02 Score=19.89 Aligned_cols=30 Identities=17% Similarity=0.153 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHhcccccCCcEEEEEEcCCC
Q psy7294 79 SVLKQCVHHMKRRTVLSYPKFTVKVLDRTG 108 (123)
Q Consensus 79 ~L~~k~i~~a~~Rd~~s~~~~~V~vI~kdG 108 (123)
+.++++++.+..+.....+..+|++|.=..
T Consensus 40 ~~~k~~~~~~~~~l~~~~~~~rv~vv~fs~ 69 (199)
T 3zqk_A 40 NRSKEFMEEVIQRMDVGQDSIHVTVLQYSY 69 (199)
T ss_dssp HHHHHHHHHHHHHSCBSTTSBEEEEEEESS
T ss_pred HHHHHHHHHHHHhcCCCCCceEEEEEEECC
Confidence 445566666666655667899999998544
No 81
>1vp7_A Exodeoxyribonuclease VII small subunit; NP_881400.1, joint center for structural genomics, PSI, protein structure initiative; 2.40A {Bordetella pertussis tohama I} SCOP: a.7.13.1
Probab=24.57 E-value=91 Score=20.33 Aligned_cols=28 Identities=21% Similarity=0.297 Sum_probs=19.8
Q ss_pred HHHHccCCCCCCHHHHHHHHHHHHHHHH
Q psy7294 62 SLVDKYYKPDLTVQEAYSVLKQCVHHMK 89 (123)
Q Consensus 62 ~~Ld~~y~~~mt~eEAi~L~~k~i~~a~ 89 (123)
.++++--..++++||++++-.+++..+.
T Consensus 41 eIV~~LE~gel~LEesl~lyeeG~~L~k 68 (100)
T 1vp7_A 41 SLVSAMENGTLPLEQSLSAYRRGVELAR 68 (100)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 3444444578999999988777776654
No 82
>1r9d_A Glycerol dehydratase; radical SAM, lyase; 1.80A {Clostridium butyricum} SCOP: c.7.1.1 PDB: 1r8w_A 1r9e_A
Probab=24.53 E-value=83 Score=27.56 Aligned_cols=37 Identities=5% Similarity=-0.156 Sum_probs=29.3
Q ss_pred eEEEcccHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHH
Q psy7294 50 YAYIGINGFLTASLVDKYYKPDLTVQEAYSVLKQCVHHM 88 (123)
Q Consensus 50 ~~a~G~Gs~~~~~~Ld~~y~~~mt~eEAi~L~~k~i~~a 88 (123)
..+.|.=.++.+|++++-.. +|+|||.+|+..-..-+
T Consensus 282 ~~S~GR~Dq~L~Pyy~~Dl~--lt~eeA~Eli~~f~iK~ 318 (787)
T 1r9d_A 282 SISPARFDQYMYPYYENDKN--ITDKFAQELIDCIWIKL 318 (787)
T ss_dssp CBCCBSHHHHHHHHHHHCSS--CCHHHHHHHHHHHHHHT
T ss_pred cccCccHHHHHHHHHhcccc--CCHHHHHHHHHHHHHHh
Confidence 34677778999999998766 99999999988555443
No 83
>2z7e_A ISCU protein, NIFU-like protein; iron-sulfur cluster, iron, biosynthesis, [2Fe-2S], asymmetric trimer, three conserved Cys; 2.30A {Aquifex aeolicus}
Probab=24.05 E-value=89 Score=21.76 Aligned_cols=53 Identities=11% Similarity=0.081 Sum_probs=39.7
Q ss_pred EEE-EEC-CCCceeeeCeEEEcccHHHHHHHHHccCCCCCCHHHHHHHHHHHHHH
Q psy7294 35 TLY-KGD-PYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEAYSVLKQCVHH 87 (123)
Q Consensus 35 ~Ly-~iD-~~Gs~~~~~~~a~G~Gs~~~~~~Ld~~y~~~mt~eEAi~L~~k~i~~ 87 (123)
.|| .+| .-|.+...+|.+.|-+...|-.=+=..+=.+.|++||.++..+.+..
T Consensus 41 ~l~lkvd~~~g~I~d~~F~~~GCais~ASaS~mte~v~Gkt~~EA~~i~~~~i~e 95 (157)
T 2z7e_A 41 LFTIKVNPENDVIEDVRFKTFGCGSAIAVSSMLTEMVKGKPIQYALNLTYKDIFE 95 (157)
T ss_dssp EEEEEECTTTCBEEEEEEEEESCTTHHHHHHHHHHHHTTSBHHHHHHCCHHHHHH
T ss_pred EEEEEEecCCCeEEEEEEEecCCHHHHHHHHHHHHHHcCCcHHHHHHHHhccHHH
Confidence 466 577 56889999999999887766655555555799999999997765543
No 84
>3qtp_A Enolase 1; glycolysis, lyase; HET: 2PG; 1.90A {Entamoeba histolytica}
Probab=23.58 E-value=80 Score=25.82 Aligned_cols=31 Identities=16% Similarity=0.383 Sum_probs=23.5
Q ss_pred CCCCC-CHHHHHHHHHHHHHHHHhcccccCCcEEEEE
Q psy7294 68 YKPDL-TVQEAYSVLKQCVHHMKRRTVLSYPKFTVKV 103 (123)
Q Consensus 68 y~~~m-t~eEAi~L~~k~i~~a~~Rd~~s~~~~~V~v 103 (123)
|-|++ +.+||++|+.+||+.+-+. +.|.|++
T Consensus 216 fap~~~~~~eaL~ll~~Ai~~aGy~-----~~i~i~l 247 (441)
T 3qtp_A 216 FAPNVSGAREALDLLVEAIAKAGYT-----GKIEIAM 247 (441)
T ss_dssp BCCCCSSHHHHHHHHHHHHHHHTCT-----TTCEEEE
T ss_pred cCCCCCCHHHHHHHHHHHHHHcCCC-----ceEEEcc
Confidence 34566 5799999999999999764 3566665
No 85
>2y8n_A 4-hydroxyphenylacetate decarboxylase large subuni; lyase, radical chemistry, metalloenzyme, iron-sulfur center; 1.75A {Clostridium scatologenes} PDB: 2yaj_A*
Probab=23.24 E-value=83 Score=28.11 Aligned_cols=60 Identities=13% Similarity=0.088 Sum_probs=41.7
Q ss_pred eEEEcccHHHHHHHHHccCCCC-CCHHHHHHHHHHHHHHHHhccc---------ccC----CcEEEEEEcCCCe
Q psy7294 50 YAYIGINGFLTASLVDKYYKPD-LTVQEAYSVLKQCVHHMKRRTV---------LSY----PKFTVKVLDRTGT 109 (123)
Q Consensus 50 ~~a~G~Gs~~~~~~Ld~~y~~~-mt~eEAi~L~~k~i~~a~~Rd~---------~s~----~~~~V~vI~kdG~ 109 (123)
..+.|.=.++.+|++++-...+ +|.|||++|+..-...+..... ++| .++.|+=.+.||.
T Consensus 345 ~~s~GRlDq~L~PyyekDl~~G~it~eeA~Ell~~~~iK~~~~~~~~s~~~~~~f~G~~~~~~~~iGG~~~dG~ 418 (897)
T 2y8n_A 345 GLSIGRLGQVLQPFYEKDVEDGIMTDEEVIELLELYRIKITCIECFASAGVSGGVLSGNTFNNLSLGGQNYDGL 418 (897)
T ss_dssp EEECBCHHHHSHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHTCCCCCCHHHHTTTSTTCCCCCEEEESBCTTSS
T ss_pred cccCCcHHHHHHHHHHhHHhcCCCCHHHHHHHHHHHHHHhccccccCChhhhcccCCCCccceEEECCcCCCCC
Confidence 3467788999999999987766 8999999998865544433211 112 2566766787773
No 86
>2yzt_A Putative uncharacterized protein TTHA1756; uncharacterized conserved protein, structural genomics, UNKN function, NPPSFA; 1.80A {Thermus thermophilus}
Probab=23.22 E-value=61 Score=18.94 Aligned_cols=21 Identities=10% Similarity=0.102 Sum_probs=18.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHh
Q psy7294 70 PDLTVQEAYSVLKQCVHHMKR 90 (123)
Q Consensus 70 ~~mt~eEAi~L~~k~i~~a~~ 90 (123)
.+-|.|||++-++.|+....+
T Consensus 29 ~G~T~eEa~~~~~eAi~~~le 49 (67)
T 2yzt_A 29 QAQSFEELLRRLQEAIAVSLE 49 (67)
T ss_dssp EESSHHHHHHHHHHHHHHHTT
T ss_pred eeCCHHHHHHHHHHHHHHHHh
Confidence 466899999999999988765
No 87
>3r3t_A 30S ribosomal protein S6; structural genomics, center for structural genomics of infec diseases, csgid, beta-barrel, cytosol; 2.30A {Bacillus anthracis}
Probab=22.88 E-value=45 Score=21.23 Aligned_cols=44 Identities=5% Similarity=0.120 Sum_probs=30.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCeEEeeccccc
Q psy7294 69 KPDLTVQEAYSVLKQCVHHMKRRTVLSYPKFTVKVLDRTGTVNVLQDLKY 118 (123)
Q Consensus 69 ~~~mt~eEAi~L~~k~i~~a~~Rd~~s~~~~~V~vI~kdG~~~l~~~~k~ 118 (123)
+|+++.|+.-+++.+.-..+.. .|. +|.-++.=|.+.|..++++
T Consensus 14 ~p~~~~e~~~~~~~~~~~~i~~----~gg--~i~~~e~wG~R~LAY~I~k 57 (99)
T 3r3t_A 14 RPGVEEEAQKALVERFAGVLTN----NGA--EIINTKEWGKRRLAYEIND 57 (99)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHT----TTC--CCCCCCCCCSCCCCCCCCC
T ss_pred CCCCCHHHHHHHHHHHHHHHHH----CCC--EEEEEEEeeccccCcCcCC
Confidence 6899999888888877766653 222 2333455588888887775
No 88
>3bbn_F Ribosomal protein S6; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=22.51 E-value=27 Score=24.97 Aligned_cols=45 Identities=13% Similarity=0.176 Sum_probs=30.9
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCeEEeecccccc
Q psy7294 69 KPDLTVQEAYSVLKQCVHHMKRRTVLSYPKFTVKVLDRTGTVNVLQDLKYS 119 (123)
Q Consensus 69 ~~~mt~eEAi~L~~k~i~~a~~Rd~~s~~~~~V~vI~kdG~~~l~~~~k~~ 119 (123)
+|+++.||..+++.+.-..+.. .+-+|.-++.=|.+.|..++|+.
T Consensus 72 rPdl~eeev~alver~~~iI~~------~GG~I~~ve~WG~RrLAY~IkK~ 116 (168)
T 3bbn_F 72 RPDMTEDERLTLTQKYEELLVA------GGAMYVEVFNRGVIPLAYSIKRK 116 (168)
T ss_dssp CTTSCHHHHHSTTHHHHHHHTT------TSCEEEEEEEEEECCCSSCTTSC
T ss_pred CCCCCHHHHHHHHHHHHHHHHH------CCCEEEEEEecccccccceeccC
Confidence 5889999988888876665542 23334445666888888877764
No 89
>1nkz_B Light-harvesting protein B-800/850, beta chain; light harvesting complex II, trans-membrane helices, rhodopi glucoside; HET: CXM RG1 BOG BCL; 2.00A {Rhodoblastus acidophilus} SCOP: f.3.1.1 PDB: 1kzu_B* 2fkw_B* 1ijd_B*
Probab=22.06 E-value=51 Score=18.17 Aligned_cols=13 Identities=23% Similarity=0.309 Sum_probs=10.3
Q ss_pred CCCCHHHHHHHHH
Q psy7294 70 PDLTVQEAYSVLK 82 (123)
Q Consensus 70 ~~mt~eEAi~L~~ 82 (123)
.+||.+||.++=.
T Consensus 1 ~gLT~~EA~EfH~ 13 (41)
T 1nkz_B 1 ATLTAEQSEELHK 13 (41)
T ss_dssp CCCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHH
Confidence 3789999999843
No 90
>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics, PSI, protein structure initiative; 2.63A {Trypanosoma cruzi}
Probab=21.96 E-value=48 Score=22.97 Aligned_cols=33 Identities=15% Similarity=0.345 Sum_probs=25.8
Q ss_pred ccHHHHHHHHHccCCCCCCHHHHHHHHHHHHHH
Q psy7294 55 INGFLTASLVDKYYKPDLTVQEAYSVLKQCVHH 87 (123)
Q Consensus 55 ~Gs~~~~~~Ld~~y~~~mt~eEAi~L~~k~i~~ 87 (123)
.++..|..+|.+.|++.+|.+..+-.+..+|..
T Consensus 101 ~~G~iCl~il~~~W~p~~~i~~vll~~l~~l~~ 133 (167)
T 4ds2_A 101 GEGGICDRMVNDFWTPDQHASDVIKLVLDRVFS 133 (167)
T ss_dssp TTSCCCTHHHHTTCCTTSCHHHHHHHHHHHHHT
T ss_pred CCCEEEcccCcCCCCCCCChHHHHHHHHHHHHh
Confidence 355688999999999999999877666655543
No 91
>3emu_A Leucine rich repeat and phosphatase domain containing protein; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.30A {Entamoeba histolytica}
Probab=21.67 E-value=56 Score=22.02 Aligned_cols=28 Identities=11% Similarity=0.179 Sum_probs=19.5
Q ss_pred ccHHHHHHHHHccCCCCCCHHHHHHHHHHH
Q psy7294 55 INGFLTASLVDKYYKPDLTVQEAYSVLKQC 84 (123)
Q Consensus 55 ~Gs~~~~~~Ld~~y~~~mt~eEAi~L~~k~ 84 (123)
..+..+..+|=.. .+++.+||++.++.+
T Consensus 100 RS~~vv~ayLm~~--~~~s~~~A~~~v~~~ 127 (161)
T 3emu_A 100 KAPAIVIAFLMYY--QRLSFINAFNKVQGL 127 (161)
T ss_dssp HHHHHHHHHHHHH--TTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--hCCCHHHHHHHHHHH
Confidence 3345666666554 379999999998754
No 92
>3otr_A Enolase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta barrel, TIM barrel; 2.75A {Toxoplasma gondii}
Probab=21.42 E-value=89 Score=25.67 Aligned_cols=31 Identities=19% Similarity=0.420 Sum_probs=23.4
Q ss_pred CCCCC-CHHHHHHHHHHHHHHHHhcccccCCcEEEEE
Q psy7294 68 YKPDL-TVQEAYSVLKQCVHHMKRRTVLSYPKFTVKV 103 (123)
Q Consensus 68 y~~~m-t~eEAi~L~~k~i~~a~~Rd~~s~~~~~V~v 103 (123)
|-|++ +.+||++|+.+||+.+-+. +.|.|++
T Consensus 220 fap~~~~~~eaL~ll~~Ai~~aGy~-----~~i~i~l 251 (452)
T 3otr_A 220 FAPNVATAEEALNLLVEAIKAAGYE-----GKIKIAF 251 (452)
T ss_dssp BCCCCCSHHHHHHHHHHHHHHHTCT-----TTSEEEE
T ss_pred cCCCCCCHHHHHHHHHHHHHHcCCC-----ceEEEcc
Confidence 34666 5799999999999999764 3566664
No 93
>3mbh_A Putative phosphomethylpyrimidine kinase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE PXL; 2.00A {Bacteroides thetaiotaomicron} PDB: 3mbj_A*
Probab=21.17 E-value=79 Score=23.50 Aligned_cols=40 Identities=15% Similarity=0.133 Sum_probs=31.6
Q ss_pred EEEcccHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHHHhc
Q psy7294 51 AYIGINGFLTASLVDKYYKPDLTVQEAYSVLKQCVHHMKRR 91 (123)
Q Consensus 51 ~a~G~Gs~~~~~~Ld~~y~~~mt~eEAi~L~~k~i~~a~~R 91 (123)
-.+|.|..|+-.++-..- .+.+.+||++.+..++..+.++
T Consensus 219 dt~GaGD~f~aai~a~l~-~g~~l~~A~~~A~~~~~~ai~~ 258 (291)
T 3mbh_A 219 HYPGTGDTFTSVITGSLM-QGDSLPMALDRATQFILQGIRA 258 (291)
T ss_dssp GSTTHHHHHHHHHHHHHH-TTCCHHHHHHHHHHHHHHHHHT
T ss_pred CCCChHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHH
Confidence 458999888877765543 4789999999999998888764
No 94
>4gof_A Small glutamine-rich tetratricopeptide repeat-CON protein alpha; four-helix bundle, protein-protein interaction, UBL4A ubiqui domain; 1.35A {Homo sapiens} PDB: 4goe_A 4god_A
Probab=20.87 E-value=80 Score=18.16 Aligned_cols=32 Identities=19% Similarity=0.255 Sum_probs=20.7
Q ss_pred HHHHHHccCC-CCCCH--HHHHHHHHHHHHHHHhc
Q psy7294 60 TASLVDKYYK-PDLTV--QEAYSVLKQCVHHMKRR 91 (123)
Q Consensus 60 ~~~~Ld~~y~-~~mt~--eEAi~L~~k~i~~a~~R 91 (123)
+..||...-+ ..++. .|.++++.+||.++.+=
T Consensus 9 Ii~FL~~~~~~~~~s~D~~ESleVAiqCi~~aF~v 43 (52)
T 4gof_A 9 IIQFLHDQLRHGGLSSDAQESLEVAIQCLETAFGV 43 (52)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhcccCCcCHhHHHHHHHHHHHHHHHcCC
Confidence 4455554432 34554 46677899999999863
No 95
>1cq3_A Viral chemokine inhibitor; beta sandwich, cytokine; 1.85A {Cowpox virus} SCOP: b.27.1.1 PDB: 2grk_A 2ffk_A 2fin_A
Probab=20.73 E-value=28 Score=25.91 Aligned_cols=18 Identities=39% Similarity=0.687 Sum_probs=15.5
Q ss_pred CCCCHHHHHHHHHHHHHH
Q psy7294 70 PDLTVQEAYSVLKQCVHH 87 (123)
Q Consensus 70 ~~mt~eEAi~L~~k~i~~ 87 (123)
+.||.+||++|+++|...
T Consensus 119 ~sitr~Ealali~~Cevs 136 (233)
T 1cq3_A 119 PAITREEALSMIKDCEMS 136 (233)
T ss_dssp CCEEHHHHHHHHHHCEEE
T ss_pred cccCHHHHHHHhhhceEE
Confidence 469999999999999743
No 96
>3s9k_A Tyrosine-protein kinase ITK/TSK; proline isomerization, CIS proline, domain swapped dimer, SH transferase; HET: CIT; 2.35A {Mus musculus} PDB: 2etz_A* 2eu0_A* 1lui_A 1luk_A 1lum_A 1lun_A 2k79_B 2k7a_B
Probab=20.43 E-value=71 Score=20.19 Aligned_cols=40 Identities=18% Similarity=0.246 Sum_probs=25.1
Q ss_pred cCCCCCCHHHHHHHHHHHHHHH--HhcccccCCcEEEEEEcC
Q psy7294 67 YYKPDLTVQEAYSVLKQCVHHM--KRRTVLSYPKFTVKVLDR 106 (123)
Q Consensus 67 ~y~~~mt~eEAi~L~~k~i~~a--~~Rd~~s~~~~~V~vI~k 106 (123)
.|+..|+.+||.+++++.=..- .=|+......+.+.+...
T Consensus 11 Wyhg~isR~~Ae~lL~~~~~~G~FLVR~S~~~g~y~LSv~~~ 52 (118)
T 3s9k_A 11 WYNKSISRDKAEKLLLDTGKEGAFMVRDSRTPGTYTVSVFTK 52 (118)
T ss_dssp TBCTTCCHHHHHHHHHHHCCTTCEEEEECSSTTCEEEEEEEC
T ss_pred eecCCCCHHHHHHHHHhcCCCCeEEEEeeCCCCCEEEEEEec
Confidence 4688999999999987631000 113333456677777665
No 97
>4gdv_A L-asparaginase; NTN enzyme, homodimer, hydrolase, L-asparagine; 1.75A {Homo sapiens} PDB: 4gdu_A 4gdt_A 4gdw_A
Probab=20.30 E-value=2e+02 Score=22.27 Aligned_cols=63 Identities=17% Similarity=0.074 Sum_probs=36.6
Q ss_pred CCceeeeC---eEEEcccHHHHHHHHHc----cCCCCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCCeE
Q psy7294 42 YGFMLEVP---YAYIGINGFLTASLVDK----YYKPDLTVQEAYSVLKQCVHHMKRRTVLSYPKFTVKVLDRTGTV 110 (123)
Q Consensus 42 ~Gs~~~~~---~~a~G~Gs~~~~~~Ld~----~y~~~mt~eEAi~L~~k~i~~a~~Rd~~s~~~~~V~vI~kdG~~ 110 (123)
.|+|.... ..++|.|-.++...+-. ..+.+++.+||.+.+.+-+ ..+. +...=|..||++|.-
T Consensus 207 aG~yAdn~~gavs~TG~GE~iir~~~A~~i~~~m~~G~s~~eA~~~~i~~~---~~~~---~g~gG~Iavd~~G~~ 276 (310)
T 4gdv_A 207 AGGYADNDIGAVSTTGHGESILKVNLARLTLFHIEQGKTVEEAADLSLGYM---KSRV---KGLGGLIVVSKTGDW 276 (310)
T ss_dssp TTEEEETTTEEEEEEECHHHHHHHTHHHHHHHHHHTTCCHHHHHHHHHHHH---HHHH---CCCEEEEEEETTSCE
T ss_pred ceeEecCCcEEEEeecCcHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH---HHhc---CCcEEEEEEeCCCCE
Confidence 34444333 45799997777654432 2245899999987755443 3331 122335567888843
No 98
>2kwp_A Transcription elongation protein NUSA; NMR {Escherichia coli}
Probab=20.26 E-value=2e+02 Score=19.14 Aligned_cols=39 Identities=10% Similarity=0.225 Sum_probs=32.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcccccCCcEEEEEEcCCC
Q psy7294 70 PDLTVQEAYSVLKQCVHHMKRRTVLSYPKFTVKVLDRTG 108 (123)
Q Consensus 70 ~~mt~eEAi~L~~k~i~~a~~Rd~~s~~~~~V~vI~kdG 108 (123)
.+++.+.-++.+..|+..+.++..-+..+++|.+=.+.|
T Consensus 16 KgI~~e~v~eaie~AL~~A~kk~~g~~~~~~V~id~~tG 54 (129)
T 2kwp_A 16 KALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSG 54 (129)
T ss_dssp HCCCHHHHHHHHHHHHHHHHHHHHCSCCCEEEEEETTTT
T ss_pred hCcCHHHHHHHHHHHHHHHHHHhcCCccceEEEEECCCC
Confidence 689999999999999999998876567788888644556
No 99
>3jtz_A Integrase; four stranded beta-sheet, DNA binding protein; 1.30A {Yersinia pestis} PDB: 3rmp_A
Probab=20.25 E-value=82 Score=19.59 Aligned_cols=21 Identities=10% Similarity=0.161 Sum_probs=18.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHh
Q psy7294 70 PDLTVQEAYSVLKQCVHHMKR 90 (123)
Q Consensus 70 ~~mt~eEAi~L~~k~i~~a~~ 90 (123)
|.+|++||.+.+.++...+..
T Consensus 57 p~~sL~~AR~~a~~~r~~l~~ 77 (88)
T 3jtz_A 57 PAISLSDARQQREGIRKMLAL 77 (88)
T ss_dssp TTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHHHHHHc
Confidence 789999999999988877753
No 100
>1h16_A Formate acetyltransferase 1; lyase, glycyl radical enzyme, acyltransferase, acetylation; HET: COA PG4; 1.53A {Escherichia coli} SCOP: c.7.1.1 PDB: 1h17_A* 1h18_A* 1mzo_A* 2pfl_A 3pfl_A 1cm5_A 1qhm_A
Probab=20.05 E-value=1.1e+02 Score=26.84 Aligned_cols=38 Identities=18% Similarity=0.218 Sum_probs=30.4
Q ss_pred eEEEcccHHHHHHHHHccCCCC-CCHHHHHHHHHHHHHH
Q psy7294 50 YAYIGINGFLTASLVDKYYKPD-LTVQEAYSVLKQCVHH 87 (123)
Q Consensus 50 ~~a~G~Gs~~~~~~Ld~~y~~~-mt~eEAi~L~~k~i~~ 87 (123)
..+.|.=.++..|++++-.+.+ +|+|||.+|+..-+.-
T Consensus 273 ~~S~GR~Dq~L~Pyy~~Dl~~G~lteeeA~Eli~~f~iK 311 (759)
T 1h16_A 273 AMSFGRTSTFLDVYIERDLKAGKITEQEAQEMVDHLVMK 311 (759)
T ss_dssp CCCCBSCHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred eecCCccchhhHHHHHhHHhcCCCCHHHHHHHHHHHHHH
Confidence 3466788999999999877766 8999999998865443
Done!