RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7294
(123 letters)
>1ryp_K 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_K
1g0u_J* 1jd2_J* 1g65_J 1vsy_K 1z7q_K 2f16_J* 2fak_J*
2fny_J* 2gpl_J* 2zcy_J* 3bdm_J* 3d29_J* 3dy3_J* 3dy4_J*
3e47_J* 3gpj_J* 3gpt_J* 3gpw_J* 3hye_J* ...
Length = 198
Score = 63.0 bits (154), Expect = 1e-13
Identities = 30/85 (35%), Positives = 48/85 (56%)
Query: 28 DCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEAYSVLKQCVHH 87
D LY+ D G +E+PY G +GF T SL+D +Y+PD+T +E +LK CV
Sbjct: 108 DKKKNKPELYQIDYLGTKVELPYGAHGYSGFYTFSLLDHHYRPDMTTEEGLDLLKLCVQE 167
Query: 88 MKRRTVLSYPKFTVKVLDRTGTVNV 112
+++R + + VK++D+ G V
Sbjct: 168 LEKRMPMDFKGVIVKIVDKDGIRQV 192
>1iru_K 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_J* 3une_J 3unf_J* 3unh_J
Length = 201
Score = 61.5 bits (150), Expect = 6e-13
Identities = 25/85 (29%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
Query: 36 LYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEAYSVLKQCVHHMKRRTVLS 95
LY D + + P+A G FLT S++D+YY P ++ + A +L++C+ +++R +L+
Sbjct: 115 LYYMDYLAALAKAPFAAHGYGAFLTLSILDRYYTPTISRERAVELLRKCLEELQKRFILN 174
Query: 96 YPKFTVKVLDRTGTVNVLQDLKYSD 120
P F+V+++D+ G ++ L ++ +
Sbjct: 175 LPTFSVRIIDKNG-IHDLDNISFPK 198
>1iru_N 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_M* 3une_M 3unf_M* 3unh_M
Length = 219
Score = 51.1 bits (123), Expect = 5e-09
Identities = 18/76 (23%), Positives = 31/76 (40%), Gaps = 2/76 (2%)
Query: 36 LYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYK--PDLTVQEAYSVLKQCVHHMKRRTV 93
L D G E P G +L L+ + + P L+ EA ++++C+ + R
Sbjct: 122 LGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPVLSQTEARDLVERCMRVLYYRDA 181
Query: 94 LSYPKFTVKVLDRTGT 109
SY +F + G
Sbjct: 182 RSYNRFQTATVTEKGV 197
>1iru_I 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_H* 3une_H
Length = 234
Score = 51.1 bits (123), Expect = 6e-09
Identities = 14/77 (18%), Positives = 34/77 (44%)
Query: 33 GVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEAYSVLKQCVHHMKRRT 92
G LY P+G ++PY +G ++ + ++PD+ +EA +++ + +
Sbjct: 107 GPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKNLVSEAIAAGIFND 166
Query: 93 VLSYPKFTVKVLDRTGT 109
+ S + V+ +
Sbjct: 167 LGSGSNIDLCVISKNKL 183
>1g0u_M Proteasome component PRE4; ubiquitin, degradation, protease,
NTN-hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP:
d.153.1.4 PDB: 2zcy_M* 3bdm_M* 3mg6_M* 3mg7_M* 3mg8_M*
3nzj_M* 3nzw_M* 3nzx_M*
Length = 266
Score = 47.4 bits (113), Expect = 1e-07
Identities = 17/92 (18%), Positives = 33/92 (35%), Gaps = 5/92 (5%)
Query: 36 LYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYK-----PDLTVQEAYSVLKQCVHHMKR 90
L + G P G + L+ K P TVQ A + + +
Sbjct: 160 LRYVNLLGVTYSSPTLATGFGAHMANPLLRKVVDRESDIPKTTVQVAEEAIVNAMRVLYY 219
Query: 91 RTVLSYPKFTVKVLDRTGTVNVLQDLKYSDFK 122
R S F++ ++D+ + ++L+ + K
Sbjct: 220 RDARSSRNFSLAIIDKNTGLTFKKNLQVENMK 251
>1ryp_N 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_N*
1jd2_M* 1g65_M 1vsy_N 1z7q_N 2f16_M* 2fak_M* 2fny_M*
2gpl_M* 3d29_M* 3dy3_M* 3dy4_M* 3e47_M* 3gpj_M* 3gpt_M*
3gpw_M* 3hye_M* 3l5q_R 3mg0_M* 3mg4_M* ...
Length = 233
Score = 46.2 bits (110), Expect = 3e-07
Identities = 17/92 (18%), Positives = 33/92 (35%), Gaps = 5/92 (5%)
Query: 36 LYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYK-----PDLTVQEAYSVLKQCVHHMKR 90
L + G P G + L+ K P TVQ A + + +
Sbjct: 127 LRYVNLLGVTYSSPTLATGFGAHMANPLLRKVVDRESDIPKTTVQVAEEAIVNAMRVLYY 186
Query: 91 RTVLSYPKFTVKVLDRTGTVNVLQDLKYSDFK 122
R S F++ ++D+ + ++L+ + K
Sbjct: 187 RDARSSRNFSLAIIDKNTGLTFKKNLQVENMK 218
>1iru_L 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_K* 3une_K 3unf_K* 3unh_K
Length = 204
Score = 42.2 bits (100), Expect = 6e-06
Identities = 20/84 (23%), Positives = 37/84 (44%), Gaps = 2/84 (2%)
Query: 33 GVTLYKGDPYGFMLEVPYAYIGINGFLTA-SLVDKYYKPDLTVQEAYSVLKQCVHHMKRR 91
G LY D G + +G +G + A ++D+ Y DL V++AY + ++ ++ R
Sbjct: 108 GPGLYYVDSEGNRISGATFSVG-SGSVYAYGVMDRGYSYDLEVEQAYDLARRAIYQATYR 166
Query: 92 TVLSYPKFTVKVLDRTGTVNVLQD 115
S + + G + V D
Sbjct: 167 DAYSGGAVNLYHVREDGWIRVSSD 190
>1ryp_H 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 3nzj_N*
3nzw_N* 3nzx_N* 1vsy_H 3l5q_B 1g65_N* 1fnt_H 1g0u_N*
1jd2_N* 1z7q_H 2f16_N* 2fak_N* 2fny_N* 2gpl_N* 2zcy_N*
3bdm_N* 3d29_N* 3dy3_N* 3dy4_N* 3e47_N* ...
Length = 205
Score = 42.2 bits (100), Expect = 7e-06
Identities = 14/74 (18%), Positives = 28/74 (37%)
Query: 36 LYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYKPDLTVQEAYSVLKQCVHHMKRRTVLS 95
+Y G + ++PYA G DK ++ +++ +E +K + + S
Sbjct: 119 VYTIPLGGSVHKLPYAIAGSGSTFIYGYCDKNFRENMSKEETVDFIKHSLSQAIKWDGSS 178
Query: 96 YPKFTVKVLDRTGT 109
+ VL G
Sbjct: 179 GGVIRMVVLTAAGV 192
>3nzj_H Proteasome component PUP1; ubiquitin, protein degradation,
N-terminal nucleophilic HYDR 19S regulatory particle;
HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB:
3nzw_H* 3nzx_H*
Length = 261
Score = 41.6 bits (98), Expect = 1e-05
Identities = 17/88 (19%), Positives = 37/88 (42%), Gaps = 2/88 (2%)
Query: 36 LYKGDPYGFMLEVPYAYIGINGFLTA-SLVDKYYKPDLTVQEAYSVLKQCVHHMKRRTVL 94
L+ +G Y +G +G L A ++++ ++K DLT +EA + + +
Sbjct: 139 LFSIHAHGSTDVGYYLSLG-SGSLAAMAVLESHWKQDLTKEEAIKLASDAIQAGIWNDLG 197
Query: 95 SYPKFTVKVLDRTGTVNVLQDLKYSDFK 122
S V V++ L++ + +
Sbjct: 198 SGSNVDVCVMEIGKDAEYLRNYLTPNVR 225
>1q5q_A Proteasome alpha-type subunit 1; proteasome assembly, Pro-peptide,
inter-subunit contacts, RH erythropolis, hydrolase;
2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB:
2h6j_A 1q5r_A
Length = 259
Score = 41.1 bits (96), Expect = 2e-05
Identities = 15/79 (18%), Positives = 32/79 (40%), Gaps = 5/79 (6%)
Query: 36 LYKGDPYGFMLEVPYAY-IGINGFLTASLVDKYYKPDLTVQEAYS----VLKQCVHHMKR 90
LY+ G +++ + +G A+ + + Y+ DL ++ A L+Q
Sbjct: 138 LYRITYDGSIVDEQHFVVMGGTTEPIATAMRESYRADLDLEAAVGIAVNALRQGGAGEGE 197
Query: 91 RTVLSYPKFTVKVLDRTGT 109
+ + V VLD++
Sbjct: 198 KRNVDVASLEVAVLDQSRP 216
>1ryp_I 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1g0u_H*
1jd2_H* 1g65_H 1vsy_I 1z7q_I 2f16_H* 2fak_H* 2fny_H*
2gpl_H* 3d29_H* 3dy3_H* 3dy4_H* 3e47_H* 3gpj_H* 3gpt_H*
3gpw_H* 3hye_H* 3l5q_M 3mg0_H* 3mg4_H* ...
Length = 222
Score = 41.1 bits (97), Expect = 2e-05
Identities = 18/91 (19%), Positives = 38/91 (41%), Gaps = 2/91 (2%)
Query: 33 GVTLYKGDPYGFMLEVPYAYIGINGFLTA-SLVDKYYKPDLTVQEAYSVLKQCVHHMKRR 91
G L+ +G Y +G +G L A ++++ ++K DLT +EA + +
Sbjct: 107 GSHLFSIHAHGSTDVGYYLSLG-SGSLAAMAVLESHWKQDLTKEEAIKLASDAIQAGIWN 165
Query: 92 TVLSYPKFTVKVLDRTGTVNVLQDLKYSDFK 122
+ S V V++ L++ + +
Sbjct: 166 DLGSGSNVDVCVMEIGKDAEYLRNYLTPNVR 196
>3nzj_K Proteasome component PRE2; ubiquitin, protein degradation,
N-terminal nucleophilic HYDR 19S regulatory particle;
HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB:
3nzw_K* 3nzx_K*
Length = 287
Score = 40.9 bits (96), Expect = 2e-05
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Query: 26 WTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTA-SLVDKYYKPDLTVQEAYSVLKQC 84
+T G T+Y D G L+ +G +G A ++D YK DL+V++A + K+
Sbjct: 179 YTRKE--GPTIYYVDSDGTRLKGDIFCVG-SGQTFAYGVLDSNYKWDLSVEDALYLGKRS 235
Query: 85 VHH 87
+
Sbjct: 236 ILA 238
>1iru_M 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_L* 3une_L 3unf_L* 3unh_L
Length = 213
Score = 40.7 bits (96), Expect = 3e-05
Identities = 14/91 (15%), Positives = 28/91 (30%), Gaps = 9/91 (9%)
Query: 36 LYKGDPYGFMLEVPYAYIG-----INGFLTASLVDKY----YKPDLTVQEAYSVLKQCVH 86
+Y DP G + G + L + K L++ A ++K
Sbjct: 121 VYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVEHVPLSLDRAMRLVKDVFI 180
Query: 87 HMKRRTVLSYPKFTVKVLDRTGTVNVLQDLK 117
R V + + ++ + G L+
Sbjct: 181 SAAERDVYTGDALRICIVTKEGIREETVSLR 211
>1iru_J 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_I* 3une_I 3unf_I* 3unh_I
Length = 205
Score = 40.6 bits (96), Expect = 3e-05
Identities = 10/70 (14%), Positives = 24/70 (34%), Gaps = 12/70 (17%)
Query: 28 DCNTFGVTLYKGDPYGFMLE-VPYAYIG-----INGFLTASLVDKYYKPDLTVQEAYSVL 81
D TF + D G + + G + G + ++P++ + +
Sbjct: 113 DPKTFKPFICSLDLIGCPMVTDDFVVSGTCAEQMYGMC-----ESLWEPNMDPDHLFETI 167
Query: 82 KQCVHH-MKR 90
Q + + + R
Sbjct: 168 SQAMLNAVDR 177
>3unf_H Proteasome subunit beta type-10; antigen presentation, drug
development, protein degradation, hydrolase-hydrolase
inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB:
3unh_H
Length = 234
Score = 40.3 bits (95), Expect = 4e-05
Identities = 17/78 (21%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Query: 33 GVTLYKGDPYGFMLEVPYAYIGINGFLTA-SLVDKYYKPDLTVQEAYSVLKQCVHHMKRR 91
G LY+ P+G +P+ +G +G A +L++ ++P++T++ A +L + +
Sbjct: 107 GPQLYEVHPHGSYSRLPFTALG-SGQGAAVALLEDRFQPNMTLEAAQELLVEAITAGILS 165
Query: 92 TVLSYPKFTVKVLDRTGT 109
+ S V+ G
Sbjct: 166 DLGSGGNVDACVITAGGA 183
>1ryp_L 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_L
1vsy_L 1z7q_L 3l5q_P 1g65_K* 1g0u_K* 1jd2_K* 2f16_K*
2fak_K* 2fny_K* 2gpl_K* 2zcy_K* 3bdm_K* 3d29_K* 3dy3_K*
3dy4_K* 3e47_K* 3gpj_K* 3gpt_K* 3gpw_K* ...
Length = 212
Score = 39.9 bits (94), Expect = 4e-05
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Query: 26 WTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTA-SLVDKYYKPDLTVQEAYSVLKQC 84
+T G T+Y D G L+ +G +G A ++D YK DL+V++A + K+
Sbjct: 104 YTRKE--GPTIYYVDSDGTRLKGDIFCVG-SGQTFAYGVLDSNYKWDLSVEDALYLGKRS 160
Query: 85 VHH 87
+
Sbjct: 161 ILA 163
>1iru_H 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_N* 3une_N
Length = 205
Score = 39.1 bits (92), Expect = 9e-05
Identities = 11/57 (19%), Positives = 20/57 (35%), Gaps = 10/57 (17%)
Query: 36 LYKGDPYGFMLEVPYAYIG-----INGFLTASLVDKYYKPDLTVQEAYSVLKQCVHH 87
+Y G M+ +A G I G++ D Y+ +T +E +
Sbjct: 111 VYSVPMGGMMVRQSFAIGGSGSSYIYGYV-----DATYREGMTKEECLQFTANALAL 162
>1yar_H Proteasome beta subunit; proteasome 20S, PA26 proteasome activator
11S, hydrolase-HYD activator complex; 1.90A
{Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_H
1yau_H 3ipm_H 1pma_B 3jrm_H 3c92_H 3c91_H 3jse_H 3jtl_H
Length = 217
Score = 38.4 bits (90), Expect = 2e-04
Identities = 12/57 (21%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
Query: 36 LYKGDPYGFMLEVPYAYIGINGFLTA-SLVDKYYKPDLTVQEAYSVLKQCVHH-MKR 90
++ D G +E YA G +G +++ Y +TV E ++ + + +R
Sbjct: 118 VFSIDAAGGSVEDIYASTG-SGSPFVYGVLESQYSEKMTVDEGVDLVIRAISAAKQR 173
>1q5q_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide,
inter-subunit contacts, RH erythropolis, hydrolase;
2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4
Length = 235
Score = 38.3 bits (89), Expect = 2e-04
Identities = 24/126 (19%), Positives = 40/126 (31%), Gaps = 14/126 (11%)
Query: 1 MLRQNSNSLTPILFMNKTLALNSKKWTDCNTFGVTLYKGDPYGFMLE--VPYAYIGINGF 58
M+R N + L + L D + + D G E Y +G
Sbjct: 86 MVRGNLGAAMQGLAVVPLLVGYDLDADDESR-AGRIVSYDVVGGRYEERAGYHAVGSGSL 144
Query: 59 LTASLVDKYYKPDLTVQEAYSVLKQCVHH-MKR--------RTVLSYPKFTVKVLDRTGT 109
S + K Y PD + A + ++ T YP T + + G
Sbjct: 145 FAKSALKKIYSPDSDEETALRAAIESLYDAADDDSATGGPDLTRGIYP--TAVTITQAGA 202
Query: 110 VNVLQD 115
V+V ++
Sbjct: 203 VHVSEE 208
>3unf_N Proteasome subunit beta type-9; antigen presentation, drug
development, protein degradation, hydrolase-hydrolase
inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB:
3unh_N
Length = 199
Score = 37.6 bits (88), Expect = 3e-04
Identities = 12/60 (20%), Positives = 19/60 (31%), Gaps = 10/60 (16%)
Query: 33 GVTLYKGDPYGFMLEVPYAYIGINGFLTASL-----VDKYYKPDLTVQEAYSVLKQCVHH 87
G G ++ P+ G + S VD YKP +T +E +
Sbjct: 107 EGGQVYGTMGGMLIRQPFTIGG-----SGSSYIYGYVDAAYKPGMTPEECRRFTTNAITL 161
>1q5r_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide,
inter-subunit contacts, hydrolase; 3.10A {Rhodococcus
erythropolis} SCOP: d.153.1.4 PDB: 2h6j_H
Length = 294
Score = 37.6 bits (87), Expect = 4e-04
Identities = 27/127 (21%), Positives = 44/127 (34%), Gaps = 16/127 (12%)
Query: 1 MLRQNSNSLTPILFMNKTLALNSKKWTDCNTFGVTLYKGDPYGFMLE--VPYAYIGINGF 58
M+R N + L + L D + + D G E Y +G +G
Sbjct: 151 MVRGNLGAAMQGLAVVPLLVGYDLDADDESR-AGRIVSYDVVGGRYEERAGYHAVG-SGS 208
Query: 59 LTA-SLVDKYYKPDLTVQEAYSVLKQCVHH-MKR--------RTVLSYPKFTVKVLDRTG 108
L A S + K Y PD + A + ++ T YP T + + G
Sbjct: 209 LFAKSALKKIYSPDSDEETALRAAIESLYDAADDDSATGGPDLTRGIYP--TAVTITQAG 266
Query: 109 TVNVLQD 115
V+V ++
Sbjct: 267 AVHVSEE 273
>1ryp_J 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_I*
1g65_I 1vsy_J 2f16_I* 2fak_I* 2fny_I* 2gpl_I* 3d29_I*
3dy3_I* 3dy4_I* 3e47_I* 3gpj_I* 3gpt_I* 3gpw_I* 3hye_I*
3l5q_N 3mg0_I* 3mg4_I* 3oeu_I* 3oev_I* ...
Length = 204
Score = 37.2 bits (87), Expect = 4e-04
Identities = 13/84 (15%), Positives = 31/84 (36%), Gaps = 1/84 (1%)
Query: 28 DCNTFGVTLYKGDPYGFMLEVP-YAYIGINGFLTASLVDKYYKPDLTVQEAYSVLKQCVH 86
+ + + D G + E + G + + Y+P+L ++ + + Q +
Sbjct: 112 NSKSGKPFIAGFDLIGCIDEAKDFIVSGTASDQLFGMCESLYEPNLEPEDLFETISQALL 171
Query: 87 HMKRRTVLSYPKFTVKVLDRTGTV 110
+ R LS V ++ + V
Sbjct: 172 NAADRDALSGWGAVVYIIKKDEVV 195
>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase,
protease, threonine protease; 4.10A {Methanocaldococcus
jannaschii}
Length = 264
Score = 35.7 bits (83), Expect = 0.002
Identities = 4/54 (7%), Positives = 12/54 (22%), Gaps = 3/54 (5%)
Query: 36 LYKGDPYGFMLE-VPYAYIGINGFLTA-SLVDKYYKPDLTVQEAYSVLKQCVHH 87
+ ++ + G L+ K + + E +
Sbjct: 113 IEMLAKKICDIKQAYTQHGG-VRPFGVSLLIAGIDKNEARLFETDPSGALIEYK 165
>1j2q_H Proteasome beta subunit; ubiquitin, CP, hydrolase; HET: CIB; 2.83A
{Archaeoglobus fulgidus} SCOP: d.153.1.4
Length = 202
Score = 35.2 bits (82), Expect = 0.002
Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 33 GVTLYKGDPYGFMLE-VPYAYIGINGFLTA-SLVDKYYKPDLTVQEAYSVLKQCVHH 87
G ++Y DP G +E G +G LTA +++ + P++ V EA + + ++
Sbjct: 108 GKSIYSIDPIGGAIEEKDIVATG-SGSLTAYGVLEDRFTPEIGVDEAVELAVRAIYS 163
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.0 bits (82), Expect = 0.002
Identities = 30/157 (19%), Positives = 52/157 (33%), Gaps = 53/157 (33%)
Query: 1 MLRQNSNSLTPILFMNKTLALNSKKWTDCNTFGVTLYKGDPYGFMLEVPYAYIGIN---- 56
++ + ++ +NK L+ +L + P + +P Y+ +
Sbjct: 394 LIWFDVIKSDVMVVVNK---LHKY----------SLVEKQPKESTISIPSIYLELKVKLE 440
Query: 57 --GFLTASLVDKYYKP------DLTVQEA----YSVLKQCVHHMK-----------RRTV 93
L S+VD Y P DL YS + HH+K R
Sbjct: 441 NEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHI---GHHLKNIEHPERMTLFRMVF 497
Query: 94 LSYPKFTVKVLDRTGT--------VNVLQDLK-YSDF 121
L + +F + + T +N LQ LK Y +
Sbjct: 498 LDF-RFLEQKIRHDSTAWNASGSILNTLQQLKFYKPY 533
>1ryp_M 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_M*
1jd2_L* 1g65_L 1vsy_M 1z7q_M 2f16_L* 2fak_L* 2fny_L*
2gpl_L* 3d29_L* 3dy3_L* 3dy4_L* 3e47_L* 3gpj_L* 3gpt_L*
3gpw_L* 3hye_L* 3l5q_Q 3mg0_L* 3mg4_L* ...
Length = 222
Score = 33.9 bits (78), Expect = 0.006
Identities = 14/105 (13%), Positives = 27/105 (25%), Gaps = 17/105 (16%)
Query: 30 NTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYYK-----------------PDL 72
+Y DP G G L +D L
Sbjct: 116 EDGKGAVYSFDPVGSYEREQCRAGGAAASLIMPFLDNQVNFKNQYEPGTNGKVKKPLKYL 175
Query: 73 TVQEAYSVLKQCVHHMKRRTVLSYPKFTVKVLDRTGTVNVLQDLK 117
+V+E +++ R + + ++ + G +LK
Sbjct: 176 SVEEVIKLVRDSFTSATERHIQVGDGLEILIVTKDGVRKEFYELK 220
>2jay_A Proteasome; hydrolase; 1.99A {Mycobacterium tuberculosis} PDB:
3mka_C 3mi0_C* 2fhg_H* 2fhh_H 3krd_C* 3mfe_G 3hfa_H*
3h6i_C 3h6f_C 3hf9_H 3mfe_H
Length = 291
Score = 34.1 bits (78), Expect = 0.006
Identities = 12/58 (20%), Positives = 20/58 (34%), Gaps = 4/58 (6%)
Query: 33 GVTLYKGDPYG--FMLEVPYAYIGINGFLTA-SLVDKYYKPDLTVQEAYSVLKQCVHH 87
+ D G + E Y +G +G L A S + K Y V + ++
Sbjct: 174 AGRIVSFDAAGGWNIEEEGYQAVG-SGSLFAKSSMKKLYSQVTDGDSGLRVAVEALYD 230
>3mi0_A Proteasome subunit alpha; enzyme inhibitors, lactones, proteasome
endopeptidase comple mycobacterium tuberculosis,
hydrolase; HET: SA6; 2.20A {Mycobacterium tuberculosis}
PDB: 3h6f_A 3krd_A* 3h6i_A* 3mka_A 2fhh_A* 2fhg_A 3hfa_D
3hf9_A 3mfe_D
Length = 248
Score = 32.2 bits (73), Expect = 0.022
Identities = 14/81 (17%), Positives = 27/81 (33%), Gaps = 7/81 (8%)
Query: 36 LYKGDPYG-FMLEVPYAYIGINGFLTASLVDKYYKPDLTVQE----AYSVLKQCVHH--M 88
LY+ G E + +G A+ + + Y + ++ + A + L+
Sbjct: 138 LYRITYDGSIADEPHFVVMGGTTEPIANALKESYAENASLTDALRIAVAALRAGSADTSG 197
Query: 89 KRRTVLSYPKFTVKVLDRTGT 109
+ L V VLD
Sbjct: 198 GDQPTLGVASLEVAVLDANRP 218
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.8 bits (71), Expect = 0.032
Identities = 8/21 (38%), Positives = 10/21 (47%), Gaps = 6/21 (28%)
Query: 59 LTASLVDKYYKPD----LTVQ 75
L ASL K Y D L ++
Sbjct: 25 LQASL--KLYADDSAPALAIK 43
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.2 bits (70), Expect = 0.070
Identities = 17/67 (25%), Positives = 23/67 (34%), Gaps = 16/67 (23%)
Query: 2 LRQNSNSLTPILF-MNKTLALNSKKWTDCNTFGVT--LYKGDPYGFMLEVPYAYIGINGF 58
LR S S++ + L + W F T L D +G P G+ G
Sbjct: 468 LRVLSGSISERIVDCIIRLPVK---WETTTQFKATHIL---D-FG-----PGGASGL-GV 514
Query: 59 LTASLVD 65
LT D
Sbjct: 515 LTHRNKD 521
>1ccd_A Clara cell 17 KD protein; phospholipase A2 inhibitor; 3.00A {Rattus
rattus} SCOP: a.101.1.1
Length = 77
Score = 28.2 bits (62), Expect = 0.29
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 66 KYYKPDLTVQEAYSVLKQCVHHMKRRTVLSYPKFTVKVL 104
K + P +Q A + LK+ V + + T ++ K T K+L
Sbjct: 28 KPFNPASDLQNAGTQLKRLVDTLPQETRINIVKLTEKIL 66
>1utr_A Uteroglobin; clara cell 17 kDa protein (CC10), phospholipase A2
inhibitor, clara cell phospholipid-binding protein,
progesterone binding; HET: PCB; NMR {Rattus norvegicus}
SCOP: a.101.1.1
Length = 96
Score = 28.1 bits (62), Expect = 0.31
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 66 KYYKPDLTVQEAYSVLKQCVHHMKRRTVLSYPKFTVKVL 104
K + P +Q A + LK+ V + + T ++ K T K+L
Sbjct: 47 KPFNPASDLQNAGTQLKRLVDTLPQETRINIVKLTEKIL 85
>1m7x_A 1,4-alpha-glucan branching enzyme; alpha/beta barrel, beta
sandwich, transferase; 2.30A {Escherichia coli} SCOP:
b.1.18.2 b.71.1.1 c.1.8.1 PDB: 3o7y_A* 3o7z_A*
Length = 617
Score = 29.1 bits (66), Expect = 0.38
Identities = 10/32 (31%), Positives = 13/32 (40%), Gaps = 8/32 (25%)
Query: 33 GVTLYKGDPYGFMLEVPYAYIGINGFLTASLV 64
G K DPY F ++ TASL+
Sbjct: 86 GNLRLKSDPYAFEAQMRPE--------TASLI 109
>1utg_A Uteroglobin; steroid binding; 1.34A {Oryctolagus cuniculus} SCOP:
a.101.1.1 PDB: 2utg_A
Length = 70
Score = 27.3 bits (60), Expect = 0.41
Identities = 10/39 (25%), Positives = 23/39 (58%)
Query: 66 KYYKPDLTVQEAYSVLKQCVHHMKRRTVLSYPKFTVKVL 104
K ++PD T+++A +K+ + + + T + K T K++
Sbjct: 26 KEFEPDDTMKDAGMQMKKVLDSLPQTTRENIMKLTEKIV 64
>3k1d_A 1,4-alpha-glucan-branching enzyme; mycobacterium tuberculosis
H37RV, mesophilic human pathogen, RV1326C gene, glycosyl
transferase; 2.33A {Mycobacterium tuberculosis}
Length = 722
Score = 28.7 bits (65), Expect = 0.45
Identities = 12/32 (37%), Positives = 14/32 (43%), Gaps = 8/32 (25%)
Query: 33 GVTLYKGDPYGFMLEVPYAYIGINGFLTASLV 64
GV + DP+ F EVP TAS V
Sbjct: 197 GVVTDRADPFAFGTEVPPQ--------TASRV 220
>4dxb_A RG13, maltose-binding periplasmic protein, beta-lactama chimera;
TEM, beta-lactamase, MBP, allosteric regulation, zinc
bindin maltose binding; 2.29A {Escherichia coli} PDB:
4dxc_A
Length = 637
Score = 27.6 bits (61), Expect = 1.2
Identities = 11/53 (20%), Positives = 14/53 (26%), Gaps = 2/53 (3%)
Query: 10 TPILFMNKTLALNS-KKWTDCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTA 61
L NK L N K W + L M + Y + A
Sbjct: 112 ALSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYF-TWPLIAA 163
>3osq_A Maltose-binding periplasmic protein, green fluore protein;
engineered protein, sensor protein, fluorescent protein,
MBP maltose sensor; HET: C12 MAL; 1.90A {Escherichia
coli}
Length = 661
Score = 27.1 bits (59), Expect = 1.8
Identities = 9/44 (20%), Positives = 11/44 (25%), Gaps = 1/44 (2%)
Query: 10 TPILFMNKTL-ALNSKKWTDCNTFGVTLYKGDPYGFMLEVPYAY 52
L NK L K W + L M + Y
Sbjct: 148 ALSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPY 191
>3hsk_A Aspartate-semialdehyde dehydrogenase; candida albicans NADP
complex, amino-acid biosynthesis; HET: NAP; 2.20A
{Candida albicans}
Length = 381
Score = 25.7 bits (57), Expect = 5.3
Identities = 10/37 (27%), Positives = 18/37 (48%)
Query: 69 KPDLTVQEAYSVLKQCVHHMKRRTVLSYPKFTVKVLD 105
+P +V++ L++ + S PK T+ VLD
Sbjct: 283 RPAPSVEDVKQCLREYECAASKLGCHSAPKQTIHVLD 319
>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1;
transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP:
b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A
Length = 495
Score = 25.1 bits (55), Expect = 7.9
Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 11/74 (14%)
Query: 20 ALNSKKWT---DCNTFGVTLYKGDPYGFMLEVPYAYIGINGFLTASLVDKYY---KPDLT 73
+L K++ D FGV L++ YG PY GI+ L++K Y +P+
Sbjct: 390 SLAYNKFSIKSDVWAFGVLLWEIATYG---MSPYP--GIDLSQVYELLEKDYRMERPEGC 444
Query: 74 VQEAYSVLKQCVHH 87
++ Y +++ C
Sbjct: 445 PEKVYELMRACWQW 458
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.137 0.410
Gapped
Lambda K H
0.267 0.0575 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,847,891
Number of extensions: 96553
Number of successful extensions: 241
Number of sequences better than 10.0: 1
Number of HSP's gapped: 229
Number of HSP's successfully gapped: 50
Length of query: 123
Length of database: 6,701,793
Length adjustment: 82
Effective length of query: 41
Effective length of database: 4,412,271
Effective search space: 180903111
Effective search space used: 180903111
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.8 bits)